Query 019446
Match_columns 341
No_of_seqs 123 out of 196
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 16:12:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019446.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019446hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v8fa_ c.26.1.4 (A:) Pantothe 6.8 54 0.0039 28.2 0.3 45 129-173 16-76 (276)
2 d1xjua_ d.2.1.3 (A:) Endolysin 6.4 1.3E+02 0.0093 22.5 2.4 27 156-182 129-155 (158)
3 d1ihoa_ c.26.1.4 (A:) Pantothe 5.5 65 0.0047 27.8 0.1 37 128-164 20-63 (282)
4 d2a84a1 c.26.1.4 (A:3-288) Pan 4.8 71 0.0052 27.5 -0.1 38 128-165 28-73 (286)
5 d1y7ua1 d.38.1.1 (A:8-171) Acy 3.9 3.6E+02 0.027 20.3 3.6 23 160-182 135-157 (164)
6 d2iida2 d.16.1.5 (A:320-432) L 3.7 1.4E+02 0.0099 20.2 0.7 12 26-37 11-22 (113)
7 d1sqga1 a.79.1.3 (A:5-144) Rib 3.2 3.5E+02 0.025 19.6 2.8 27 163-190 114-140 (140)
8 d2huja1 a.24.26.1 (A:1-120) Hy 3.1 4E+02 0.029 20.2 3.0 38 160-197 37-74 (120)
9 d1xs1a_ b.85.4.1 (A:) Deoxycyt 3.0 3.2E+02 0.023 21.2 2.4 24 285-308 168-191 (193)
10 d2b5ua2 b.110.1.1 (A:84-315) C 2.9 1.7E+02 0.012 24.7 0.5 36 140-175 184-221 (232)
No 1
>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]}
Probab=6.78 E-value=54 Score=28.16 Aligned_cols=45 Identities=24% Similarity=0.242 Sum_probs=24.9
Q ss_pred ccccccCCCCCCCCCC-CCCCCCC---CC---Cceeecchh---------hHHHHHHHHHH
Q 019446 129 GHSIVHPQSMGVHSAR-MALPLEM---AE---EPVYVNAKQ---------YHGILRRRQLR 173 (341)
Q Consensus 129 gh~i~~~q~~G~~~~r-~~LP~e~---~e---ePiyVNaKQ---------Y~rIlrRRq~R 173 (341)
...|+.-+.||.-|+. +.|--.+ .+ -.|||||.| |.|-+..=.+.
T Consensus 16 ~~~i~~VPTMGaLH~GHlsLi~~a~~~~~~vvvSIFVNP~QF~~~eD~~~YPr~~~~D~~~ 76 (276)
T d1v8fa_ 16 REGVGFVPTMGYLHRGHLALVERARRENPFVVVSVFVNPLQFGPGEDYHRYPRDLERDRAL 76 (276)
T ss_dssp SSCEEEEEECSSCCHHHHHHHHHHHHHCSEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHH
T ss_pred cCCEEEEcCCccHhHHHHHHHHHHHHhCCCEEEEEEecCccCCCcchhhccccchhhhHHH
Confidence 3456666677766532 2332211 11 368999999 66666544333
No 2
>d1xjua_ d.2.1.3 (A:) Endolysin Lyz {Bacteriophage P1 [TaxId: 10678]}
Probab=6.44 E-value=1.3e+02 Score=22.48 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=19.7
Q ss_pred eeecchhhHHHHHHHHHHHHHHHhhhh
Q 019446 156 VYVNAKQYHGILRRRQLRAKAELERKL 182 (341)
Q Consensus 156 iyVNaKQY~rIlrRRq~Rak~e~e~kl 182 (341)
++.+-|-..++.+||++.+++=+++.+
T Consensus 129 ~~~~g~~~~GL~~RR~~E~~L~l~g~~ 155 (158)
T d1xjua_ 129 VNSNGVPLRGLKIRREKERQLCLTGLV 155 (158)
T ss_dssp CEETTEECHHHHHHHHHHHHHHHTTTS
T ss_pred HhcCCEEChhHHHHHHHHHHHHHcccc
Confidence 344445688999999999887776553
No 3
>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]}
Probab=5.49 E-value=65 Score=27.75 Aligned_cols=37 Identities=24% Similarity=0.332 Sum_probs=22.0
Q ss_pred cccccccCCCCCCCCCCC-CCCCCC---CC---CceeecchhhH
Q 019446 128 VGHSIVHPQSMGVHSARM-ALPLEM---AE---EPVYVNAKQYH 164 (341)
Q Consensus 128 ~gh~i~~~q~~G~~~~r~-~LP~e~---~e---ePiyVNaKQY~ 164 (341)
.|..|+.-+.||.-|... .|--.+ .+ -.|||||.||.
T Consensus 20 ~g~~ig~VPTMGaLH~GHlsLi~~A~~~~~~vvvSIFVNP~QF~ 63 (282)
T d1ihoa_ 20 EGKRVALVPTMGNLHDGHMKLVDEAKARADVVVVSIFVNPMQFD 63 (282)
T ss_dssp TTCCEEEEEECSCCCHHHHHHHHHHHHHCSEEEEEECCCGGGCS
T ss_pred cCCcEEEEcCCcchhHHHHHHHHHHHHhCCcEEEEEEecCccCc
Confidence 367787777777766322 332211 11 36899998853
No 4
>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=4.81 E-value=71 Score=27.50 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=23.6
Q ss_pred cccccccCCCCCCCCCCC-CCCCCC----CC---CceeecchhhHH
Q 019446 128 VGHSIVHPQSMGVHSARM-ALPLEM----AE---EPVYVNAKQYHG 165 (341)
Q Consensus 128 ~gh~i~~~q~~G~~~~r~-~LP~e~----~e---ePiyVNaKQY~r 165 (341)
.|-+|+.-+.||.-|+.. .|--.+ .+ -.|||||.||.-
T Consensus 28 ~g~~i~~VPTMGaLH~GHlsLi~~a~~~~~~~vvvSIFVNP~QF~~ 73 (286)
T d2a84a1 28 TGRRVMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGA 73 (286)
T ss_dssp TTCCEEEEEECSSCCHHHHHHHHHHHTSTTCEEEEEECCCCCCTTC
T ss_pred hCCeEEEEeCCcchhHHHHHHHHHHhhcCCCEEEEEEeecccccCc
Confidence 678888888888866322 332111 11 368999999543
No 5
>d1y7ua1 d.38.1.1 (A:8-171) Acyl-coa hydrolase BC2038 {Bacillus cereus [TaxId: 1396]}
Probab=3.94 E-value=3.6e+02 Score=20.30 Aligned_cols=23 Identities=17% Similarity=0.055 Sum_probs=13.6
Q ss_pred chhhHHHHHHHHHHHHHHHhhhh
Q 019446 160 AKQYHGILRRRQLRAKAELERKL 182 (341)
Q Consensus 160 aKQY~rIlrRRq~Rak~e~e~kl 182 (341)
.+.|..-.+||++|...+.+.+-
T Consensus 135 ~~~~~~a~~r~~~R~~r~~~~~~ 157 (164)
T d1y7ua1 135 KESHRIAVLRAEQRHIRKAESKK 157 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666677777665555443
No 6
>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Probab=3.70 E-value=1.4e+02 Score=20.16 Aligned_cols=12 Identities=17% Similarity=0.562 Sum_probs=8.8
Q ss_pred ccccccccCCCC
Q 019446 26 ISSQPWWRGVGH 37 (341)
Q Consensus 26 v~S~PWW~~~G~ 37 (341)
.+.+|||+.-|.
T Consensus 11 ~f~~~FW~~~g~ 22 (113)
T d2iida2 11 TCTTKFWEDDGI 22 (113)
T ss_dssp EESSCGGGGGTC
T ss_pred EcCCCCCCCcCC
Confidence 467999986554
No 7
>d1sqga1 a.79.1.3 (A:5-144) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.25 E-value=3.5e+02 Score=19.60 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhcCCCcc
Q 019446 163 YHGILRRRQLRAKAELERKLIKVRKPYL 190 (341)
Q Consensus 163 Y~rIlrRRq~Rak~e~e~kl~k~rk~Yl 190 (341)
.++|| |+-.|.+.++...+...-+.||
T Consensus 114 VNaVL-r~~~r~~~~~~~~~~~~~~~~~ 140 (140)
T d1sqga1 114 INGVL-RQFQRQQEELLAEFNASDARYL 140 (140)
T ss_dssp HHHHH-HHHHHHHHHHHHHHTTSGGGGC
T ss_pred hHHHH-HHHHhCcHHHHHhhcccccccC
Confidence 45788 4666777777666655555554
No 8
>d2huja1 a.24.26.1 (A:1-120) Hypothetical protein Lin2004 {Listeria innocua [TaxId: 1642]}
Probab=3.07 E-value=4e+02 Score=20.21 Aligned_cols=38 Identities=18% Similarity=0.057 Sum_probs=21.4
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhcCCCcchhchhHH
Q 019446 160 AKQYHGILRRRQLRAKAELERKLIKVRKPYLHESRHLH 197 (341)
Q Consensus 160 aKQY~rIlrRRq~Rak~e~e~kl~k~rk~YlHESRH~H 197 (341)
-|=|--.+.+...+=+..+..-+...|-+|||+.-=..
T Consensus 37 VKPf~d~vd~~l~~W~~~a~~~i~~~rp~y~h~~Qie~ 74 (120)
T d2huja1 37 MKPFVDEAKRCADDFLELAIPWVNTERPPYLGELQLRQ 74 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhCcccCCHHHHHH
Confidence 34444555555555443333444447999999875433
No 9
>d1xs1a_ b.85.4.1 (A:) Deoxycytidine triphosphate deaminase (dCTP deaminase) {Escherichia coli [TaxId: 562]}
Probab=2.98 E-value=3.2e+02 Score=21.25 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=18.2
Q ss_pred cceecCCCCccccCCCCcceeecc
Q 019446 285 QTYYEGNGNGCYSHHQGFQLFKCH 308 (341)
Q Consensus 285 ~~~~~gn~~g~y~~~~~~q~s~~h 308 (341)
..+|.+.-+|.||+..|.+.|+..
T Consensus 168 ~~~Y~~~~~gkYq~q~g~~~sk~~ 191 (193)
T d1xs1a_ 168 VRPYNRREDAKYRNQQGAVASRID 191 (193)
T ss_dssp SSCGGGCTTCSCSSBCSCCCCCGG
T ss_pred ccccCCCCCCcCCCCCCCCccccc
Confidence 455666667899999999888764
No 10
>d2b5ua2 b.110.1.1 (A:84-315) Colicin E3 N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.86 E-value=1.7e+02 Score=24.74 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCCCCCceeecchh--hHHHHHHHHHHHH
Q 019446 140 VHSARMALPLEMAEEPVYVNAKQ--YHGILRRRQLRAK 175 (341)
Q Consensus 140 ~~~~r~~LP~e~~eePiyVNaKQ--Y~rIlrRRq~Rak 175 (341)
+.+.-+-+|.+.--+||||---- =-.+++|||...|
T Consensus 184 ~~D~Ii~FP~~SGl~PvYVs~~~~l~s~~~~r~q~e~k 221 (232)
T d2b5ua2 184 TRDAVIRFPKDSGHNAVYVSVSDVLSPDQVKQRQDEEN 221 (232)
T ss_dssp EEEEEEECCGGGCCCCEEEEEEECCCHHHHHHHHHHHH
T ss_pred cceEEEEccCCCCCCCEEEEecccCCHHHHHHHHHHHH
Confidence 33444556666667999984321 2234456655443
Done!