BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019447
(341 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 234 bits (597), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 115/210 (54%), Positives = 144/210 (68%), Gaps = 6/210 (2%)
Query: 25 LIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNS-GCGGG 83
++ +++ C G+CWAFS A+EGINKI TG L+SLSEQEL+DC R+ N+ GC GG
Sbjct: 13 VVDIKDQGQC----GSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQNTRGCDGG 68
Query: 84 LMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAV 143
M +QF+I N GI+TE +YPY + GQCN V+ID Y++VP NNE L AV
Sbjct: 69 FMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNNEWALQTAV 128
Query: 144 VAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSW 203
QPVSV + + FQ YSSGIFTGPC T++DHAV IVGY +E G+DYWI+KNSWG +W
Sbjct: 129 AYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGTEGGIDYWIVKNSWGTTW 188
Query: 204 GMNGYMHMQRNTGNSLGICGINMLASYPTK 233
G GYM +QRN G +G CGI ASYP K
Sbjct: 189 GEEGYMRIQRNVG-GVGQCGIAKKASYPVK 217
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 234 bits (597), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 115/210 (54%), Positives = 145/210 (69%), Gaps = 6/210 (2%)
Query: 25 LIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNS-GCGGG 83
++ +++ C G CWAFSA +EGINKIVTG L+SLSEQELIDC R+ N+ GC GG
Sbjct: 13 VVDIKSQGEC----GGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQNTRGCNGG 68
Query: 84 LMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAV 143
+ +QF+I N GI+TE++YPY Q G+CN N VTID Y++VP NNE L AV
Sbjct: 69 YITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYENVPYNNEWALQTAV 128
Query: 144 VAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSW 203
QPVSV + + AF+ YSSGIFTGPC T++DHAV IVGY +E G+DYWI+KNSW +W
Sbjct: 129 TYQPVSVALDAAGDAFKQYSSGIFTGPCGTAIDHAVTIVGYGTEGGIDYWIVKNSWDTTW 188
Query: 204 GMNGYMHMQRNTGNSLGICGINMLASYPTK 233
G GYM + RN G + G CGI + SYP K
Sbjct: 189 GEEGYMRILRNVGGA-GTCGIATMPSYPVK 217
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 233 bits (593), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 111/213 (52%), Positives = 151/213 (70%), Gaps = 6/213 (2%)
Query: 25 LIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGL 84
++ +N+ C G+CWAFS A+EGIN+IVTG L+SLSEQ+L+DC + N GC GG
Sbjct: 15 VVPVKNQGGC----GSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDC-TTANHGCRGGW 69
Query: 85 MDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVV 144
M+ A+QF++ N GI++E+ YPYRGQ G CN +N +V+ID Y++VP +NE+ L +AV
Sbjct: 70 MNPAFQFIVNNGGINSEETYPYRGQDGICNS-TVNAPVVSIDSYENVPSHNEQSLQKAVA 128
Query: 145 AQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWG 204
QPVSV + + R FQLY SGIFTG C+ S +HA+ +VGY +EN D+WI+KNSWG++WG
Sbjct: 129 NQPVSVTMDAAGRDFQLYRSGIFTGSCNISANHALTVVGYGTENDKDFWIVKNSWGKNWG 188
Query: 205 MNGYMHMQRNTGNSLGICGINMLASYPTKTGQN 237
+GY+ +RN N G CGI ASYP K G N
Sbjct: 189 ESGYIRAERNIENPDGKCGITRFASYPVKKGTN 221
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 231 bits (590), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 114/210 (54%), Positives = 143/210 (68%), Gaps = 6/210 (2%)
Query: 25 LIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNS-GCGGG 83
++ +++ C G+ WAFS A+EGINKI TG L+SLSEQEL+DC R+ N+ GC GG
Sbjct: 13 VVDIKDQGQC----GSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQNTRGCDGG 68
Query: 84 LMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAV 143
M +QF+I N GI+TE +YPY + GQCN V+ID Y++VP NNE L AV
Sbjct: 69 FMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNNEWALQTAV 128
Query: 144 VAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSW 203
QPVSV + + FQ YSSGIFTGPC T++DHAV IVGY +E G+DYWI+KNSWG +W
Sbjct: 129 AYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGTEGGIDYWIVKNSWGTTW 188
Query: 204 GMNGYMHMQRNTGNSLGICGINMLASYPTK 233
G GYM +QRN G +G CGI ASYP K
Sbjct: 189 GEEGYMRIQRNVG-GVGQCGIAKKASYPVK 217
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 228 bits (582), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 109/200 (54%), Positives = 133/200 (66%), Gaps = 1/200 (0%)
Query: 39 GACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHGI 98
G+CWAFS A+EGIN+I T LVSLSEQEL+DCD N GC GGLMDYA++F+ + GI
Sbjct: 24 GSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQNQGCNGGLMDYAFEFIKQRGGI 83
Query: 99 DTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQPVSVGICGSERA 158
TE +YPY G C+ K N V+IDG+++VPEN+E LL+AV QPVSV I
Sbjct: 84 TTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDENALLKAVANQPVSVAIDAGGSD 143
Query: 159 FQLYSSGIFTGPCSTSLDHAVLIVGYDSE-NGVDYWIIKNSWGRSWGMNGYMHMQRNTGN 217
FQ YS G+FTG C T LDH V IVGY + +G YW +KNSWG WG GY+ M+R +
Sbjct: 144 FQFYSEGVFTGSCGTELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISD 203
Query: 218 SLGICGINMLASYPTKTGQN 237
G+CGI M ASYP K N
Sbjct: 204 KEGLCGIAMEASYPIKKSSN 223
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 227 bits (579), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 109/200 (54%), Positives = 141/200 (70%), Gaps = 4/200 (2%)
Query: 39 GACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHGI 98
G+CWAFS ++EGIN I TGSLVSLSEQELIDCD + N GC GGLMD A++++ N G+
Sbjct: 26 GSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTADNDGCQGGLMDNAFEYIKNNGGL 85
Query: 99 DTEKDYPYRGQAGQCNKQKLNRH---IVTIDGYKDVPENNEKQLLQAVVAQPVSVGICGS 155
TE YPYR G CN + ++ +V IDG++DVP N+E+ L +AV QPVSV + S
Sbjct: 86 ITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVANQPVSVAVEAS 145
Query: 156 ERAFQLYSSGIFTGPCSTSLDHAVLIVGYD-SENGVDYWIIKNSWGRSWGMNGYMHMQRN 214
+AF YS G+FTG C T LDH V +VGY +E+G YW +KNSWG SWG GY+ ++++
Sbjct: 146 GKAFMFYSEGVFTGECGTELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKD 205
Query: 215 TGNSLGICGINMLASYPTKT 234
+G S G+CGI M ASYP KT
Sbjct: 206 SGASGGLCGIAMEASYPVKT 225
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 225 bits (574), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 107/206 (51%), Positives = 146/206 (70%), Gaps = 7/206 (3%)
Query: 28 FRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDY 87
+N+ C G+CWAFSA A+E INKI TG L+SLSEQEL+DCD + + GC GG M+
Sbjct: 16 IKNQKQC----GSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTA-SHGCNGGWMNN 70
Query: 88 AYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQP 147
A+Q++I N GIDT+++YPY G C +L +V+I+G++ V NNE L AV +QP
Sbjct: 71 AFQYIITNGGIDTQQNYPYSAVQGSCKPYRL--RVVSINGFQRVTRNNESALQSAVASQP 128
Query: 148 VSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNG 207
VSV + + FQ YSSGIFTGPC T+ +H V+IVGY +++G +YWI++NSWG++WG G
Sbjct: 129 VSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQG 188
Query: 208 YMHMQRNTGNSLGICGINMLASYPTK 233
Y+ M+RN +S G+CGI L SYPTK
Sbjct: 189 YIWMERNVASSAGLCGIAQLPSYPTK 214
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 224 bits (571), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 145/210 (69%), Gaps = 6/210 (2%)
Query: 25 LIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNS-GCGGG 83
++ +++ C G WAFSA +EGINKI +GSL+SLSEQELIDC R+ N+ GC GG
Sbjct: 13 VVDIKSQGEC----GGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQNTRGCDGG 68
Query: 84 LMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAV 143
+ +QF+I + GI+TE++YPY Q G C+ ++ VTID Y++VP NNE L AV
Sbjct: 69 YITDGFQFIINDGGINTEENYPYTAQDGDCDVALQDQKYVTIDTYENVPYNNEWALQTAV 128
Query: 144 VAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSW 203
QPVSV + + AF+ Y+SGIFTGPC T++DHA++IVGY +E GVDYWI+KNSW +W
Sbjct: 129 TYQPVSVALDAAGDAFKQYASGIFTGPCGTAVDHAIVIVGYGTEGGVDYWIVKNSWDTTW 188
Query: 204 GMNGYMHMQRNTGNSLGICGINMLASYPTK 233
G GYM + RN G + G CGI + SYP K
Sbjct: 189 GEEGYMRILRNVGGA-GTCGIATMPSYPVK 217
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 105/206 (50%), Positives = 134/206 (65%), Gaps = 14/206 (6%)
Query: 29 RNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYA 88
+N+ C G+CWAFS +E IN+I TG+L+SLSEQ+L+DC++ N GC GG YA
Sbjct: 17 KNQGKC----GSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKK-NHGCKGGAFVYA 71
Query: 89 YQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQPV 148
YQ++I N GIDTE +YPY+ G C + + +V IDGYK VP NE L +AV +QP
Sbjct: 72 YQYIIDNGGIDTEANYPYKAVQGPC---RAAKKVVRIDGYKGVPHCNENALKKAVASQPS 128
Query: 149 SVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGY 208
V I S + FQ Y SGIF+GPC T L+H V+IVGY DYWI++NSWGR WG GY
Sbjct: 129 VVAIDASSKQFQHYKSGIFSGPCGTKLNHGVVIVGYWK----DYWIVRNSWGRYWGEQGY 184
Query: 209 MHMQRNTGNSLGICGINMLASYPTKT 234
+ M+R G G+CGI L YPTK
Sbjct: 185 IRMKRVGG--CGLCGIARLPYYPTKA 208
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 204 bits (520), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 132/210 (62%), Gaps = 14/210 (6%)
Query: 25 LIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGL 84
+I +N+ C G+CWAFS +E IN+I TG+L+SLSEQ+L+DC + N GC GG
Sbjct: 13 VIPLKNQGKC----GSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKK-NHGCKGGY 67
Query: 85 MDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVV 144
D AYQ++I N GIDTE +YPY+ G C K +V IDG K VP+ NE L AV
Sbjct: 68 FDRAYQYIIANGGIDTEANYPYKAFQGPCRAAK---KVVRIDGCKGVPQCNENALKNAVA 124
Query: 145 AQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWG 204
+QP V I S + FQ Y GIFTGPC T L+H V+IVGY G DYWI++NSWGR WG
Sbjct: 125 SQPSVVAIDASSKQFQHYKGGIFTGPCGTKLNHGVVIVGY----GKDYWIVRNSWGRHWG 180
Query: 205 MNGYMHMQRNTGNSLGICGINMLASYPTKT 234
GY M+R G G+CGI L YPTK
Sbjct: 181 EQGYTRMKRVGG--CGLCGIARLPFYPTKA 208
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 202 bits (515), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 106/206 (51%), Positives = 133/206 (64%), Gaps = 14/206 (6%)
Query: 29 RNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYA 88
+N+ SC G+CWAFS +E IN+I TG+L+SLSEQEL+DCD+ N GC GG +A
Sbjct: 17 KNQGSC----GSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKK-NHGCLGGAFVFA 71
Query: 89 YQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQPV 148
YQ++I N GIDT+ +YPY+ G C + +V+IDGY VP NE L QAV QP
Sbjct: 72 YQYIINNGGIDTQANYPYKAVQGPC---QAASKVVSIDGYNGVPFCNEXALKQAVAVQPS 128
Query: 149 SVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGY 208
+V I S FQ YSSGIF+GPC T L+H V IVGY + +YWI++NSWGR WG GY
Sbjct: 129 TVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGYQA----NYWIVRNSWGRYWGEKGY 184
Query: 209 MHMQRNTGNSLGICGINMLASYPTKT 234
+ M R G G+CGI L YPTK
Sbjct: 185 IRMLRVGG--CGLCGIARLPYYPTKA 208
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 194 bits (492), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 98/205 (47%), Positives = 130/205 (63%), Gaps = 6/205 (2%)
Query: 29 RNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYA 88
+N+ +C G+ WAFS +EGINKIVTG+L+ LSEQEL+DCD+ ++ GC GG +
Sbjct: 17 KNQGAC----GSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDK-HSYGCKGGYQTTS 71
Query: 89 YQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQPV 148
Q+V N+G+ T K YPY+ + +C V I GYK VP N E L A+ QP+
Sbjct: 72 LQYVA-NNGVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNXETSFLGALANQPL 130
Query: 149 SVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGY 208
SV + + FQLY SG+F GPC T LDHAV VGY + +G +Y IIKNSWG +WG GY
Sbjct: 131 SVLVEAGGKPFQLYKSGVFDGPCGTKLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGY 190
Query: 209 MHMQRNTGNSLGICGINMLASYPTK 233
M ++R +GNS G CG+ + YP K
Sbjct: 191 MRLKRQSGNSQGTCGVYKSSYYPFK 215
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/209 (48%), Positives = 128/209 (61%), Gaps = 6/209 (2%)
Query: 25 LIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGL 84
+ R++ SC G+CWAFSA +EGINKI TG LV LSEQEL+DC+R + GC GG
Sbjct: 13 VTPVRHQGSC----GSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR-SHGCKGGY 67
Query: 85 MDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVV 144
YA ++V KN GI YPY+ + G C +++ IV G V NNE LL A+
Sbjct: 68 PPYALEYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIA 126
Query: 145 AQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWG 204
QPVSV + R FQLY GIF GPC T +DHAV VGY G Y +IKNSWG +WG
Sbjct: 127 KQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDHAVTAVGYGKSGGKGYILIKNSWGTAWG 186
Query: 205 MNGYMHMQRNTGNSLGICGINMLASYPTK 233
GY+ ++R GNS G+CG+ + YPTK
Sbjct: 187 EKGYIRIKRAPGNSPGVCGLYKSSYYPTK 215
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/205 (46%), Positives = 129/205 (62%), Gaps = 10/205 (4%)
Query: 29 RNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYA 88
+N++ C G+CWAFS IEGINKI+TG L+SLSEQEL+DC+R + GC GG +
Sbjct: 17 KNQNPC----GSCWAFSTVATIEGINKIITGQLISLSEQELLDCERR-SHGCDGGYQTTS 71
Query: 89 YQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQPV 148
Q+V+ N G+ TE++YPY + G+C + V I GYK VP N+E L+QA+ QPV
Sbjct: 72 LQYVVDN-GVHTEREYPYEKKQGRCRAKDKKGPKVYITGYKYVPANDEISLIQAIANQPV 130
Query: 149 SVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGY 208
SV R FQ Y GI+ GPC T+ DHAV VGY G Y ++KNSWG +WG GY
Sbjct: 131 SVVTDSRGRGFQFYKGGIYEGPCGTNTDHAVTAVGY----GKTYLLLKNSWGPNWGEKGY 186
Query: 209 MHMQRNTGNSLGICGINMLASYPTK 233
+ ++R +G S G CG+ + +P K
Sbjct: 187 IRIKRASGRSKGTCGVYTSSFFPIK 211
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 187 bits (476), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 101/209 (48%), Positives = 128/209 (61%), Gaps = 6/209 (2%)
Query: 25 LIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGL 84
+ R++ SC G+CWAFSA +EGINKI TG LV LSEQEL+DC+R + GC GG
Sbjct: 13 VTPVRHQGSC----GSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR-SHGCKGGY 67
Query: 85 MDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVV 144
YA ++V KN GI YPY+ + G C +++ IV G V NNE LL A+
Sbjct: 68 PPYALEYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIA 126
Query: 145 AQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWG 204
QPVSV + R FQLY GIF GPC T ++HAV VGY G Y +IKNSWG +WG
Sbjct: 127 KQPVSVVVESKGRPFQLYKGGIFEGPCGTKVEHAVTAVGYGKSGGKGYILIKNSWGTAWG 186
Query: 205 MNGYMHMQRNTGNSLGICGINMLASYPTK 233
GY+ ++R GNS G+CG+ + YPTK
Sbjct: 187 EKGYIRIKRAPGNSPGVCGLYKSSYYPTK 215
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 184 bits (468), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 138/221 (62%), Gaps = 17/221 (7%)
Query: 26 IQFRNKSSCLYLL-----GACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGC 80
I +R K + + G CWAF ATGAIEGI+ I TG L+S+SEQ+++DCD
Sbjct: 5 IDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXXXXX 64
Query: 81 GGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVT-IDGYKDVPENNEKQL 139
GG D A+++VI N GI ++ +YPY G G C+ LN+ I IDGY +VP N+ L
Sbjct: 65 GGDADD-AFRWVITNGGIASDANYPYTGVDGTCD---LNKPIAARIDGYTNVP-NSSSAL 119
Query: 140 LQAVVAQPVSVGICGSERAFQLYS-SGIFTGP-CS---TSLDHAVLIVGYDSE-NGVDYW 193
L AV QPVSV I S +FQLY+ GIF G CS ++DH VLIVGY S DYW
Sbjct: 120 LDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNADYW 179
Query: 194 IIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTKT 234
I+KNSWG WG++GY+ ++RNT G+C I+ SYPTK+
Sbjct: 180 IVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPTKS 220
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/230 (45%), Positives = 134/230 (58%), Gaps = 6/230 (2%)
Query: 5 YVLEDLALLSFTGHKLQMILLIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSL 64
++ ED+ L + + R++ SC G+CWAFSA +EGINKI TG LV L
Sbjct: 99 FINEDIVNLPENVDWRKKGAVTPVRHQGSC----GSCWAFSAVATVEGINKIRTGKLVEL 154
Query: 65 SEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVT 124
SEQEL+DC+R + GC GG YA ++V KN GI YPY+ + G C +++ IV
Sbjct: 155 SEQELVDCERR-SHGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVK 212
Query: 125 IDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGY 184
G V NNE LL A+ QPVSV + R FQLY GIF GPC T +D AV VGY
Sbjct: 213 TSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDGAVTAVGY 272
Query: 185 DSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTKT 234
G Y +IKNSWG +WG GY+ ++R GNS G+CG+ + YPTK
Sbjct: 273 GKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTKN 322
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/197 (46%), Positives = 124/197 (62%), Gaps = 5/197 (2%)
Query: 39 GACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY-NSGCGGGLMDYAYQFVIKNHG 97
G+CWAFS TGA+EG + TG LVSLSEQEL+DC R+ N C GG M+ A+Q+V+ + G
Sbjct: 29 GSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAEGNQSCSGGEMNDAFQYVLDSGG 88
Query: 98 IDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQPVSVGICGSER 157
I +E YPY + +C Q + +V I G+KDVP +E + A+ PVS+ I +
Sbjct: 89 ICSEDAYPYLARDEECRAQSCEK-VVKILGFKDVPRRSEAAMKAALAKSPVSIAIEADQM 147
Query: 158 AFQLYSSGIFTGPCSTSLDHAVLIVGY--DSENGVDYWIIKNSWGRSWGMNGYMHMQRNT 215
FQ Y G+F C T LDH VL+VGY D E+ D+WI+KNSWG WG +GYM+M +
Sbjct: 148 PFQFYHEGVFDASCGTDLDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHK 207
Query: 216 GNSLGICGINMLASYPT 232
G G CG+ + AS+P
Sbjct: 208 GEE-GQCGLLLDASFPV 223
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 178 bits (452), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 102/204 (50%), Positives = 132/204 (64%), Gaps = 16/204 (7%)
Query: 39 GACWAFSATGAIEGINKIVTGSLVSLSEQELIDC-DRSYNSGCGGGLMDYAYQFVIKNHG 97
G+ WAFSATGAIE + I TG+LVSLSEQELIDC D S GC G ++++V+K+ G
Sbjct: 24 GSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDES--EGCYNGWHYQSFEWVVKHGG 81
Query: 98 IDTEKDYPYRGQAGQCNKQKLNRHIVTIDGY-------KDVPENNEKQLLQAVVAQPVSV 150
I +E DYPY+ + G+C ++ VTID Y + E L V+ QP+SV
Sbjct: 82 IASEADYPYKARDGKCKANEIQDK-VTIDNYGVQILSNESTESEAESSLQSFVLEQPISV 140
Query: 151 GICGSERAFQLYSSGIFTG-PCST--SLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNG 207
I + F YS GI+ G CS+ ++H VLIVGY SE+GVDYWI KNSWG WG++G
Sbjct: 141 SI--DAKDFHFYSGGIYDGGNCSSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDG 198
Query: 208 YMHMQRNTGNSLGICGINMLASYP 231
Y+ +QRNTGN LG+CG+N ASYP
Sbjct: 199 YIRIQRNTGNLLGVCGMNYFASYP 222
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 127/210 (60%), Gaps = 12/210 (5%)
Query: 25 LIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGL 84
+ +N+ C G+CWAFS+ GA+EG K TG L++LS Q L+DC S N GCGGG
Sbjct: 13 VTPVKNQGQC----GSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSENDGCGGGY 67
Query: 85 MDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVV 144
M A+Q+V KN GID+E YPY GQ C + GY+++PE NEK L +AV
Sbjct: 68 MTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGK-AAKCRGYREIPEGNEKALKRAVA 126
Query: 145 -AQPVSVGICGSERAFQLYSSGIFTGPC--STSLDHAVLIVGYDSENGVDYWIIKNSWGR 201
PVSV I S +FQ YS G++ S +L+HAVL VGY G +WIIKNSWG
Sbjct: 127 RVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGESKGNKHWIIKNSWGE 186
Query: 202 SWGMNGYMHMQRNTGNSLGICGINMLASYP 231
+WGM GY+ M RN N+ CGI LAS+P
Sbjct: 187 NWGMGGYIKMARNKNNA---CGIANLASFP 213
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 174 bits (440), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 103/213 (48%), Positives = 129/213 (60%), Gaps = 10/213 (4%)
Query: 21 QMILLIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGC 80
Q + RN+ C G+CW FS+ A+EGINKIVTG L+SLSEQEL+DC+R + GC
Sbjct: 9 QKGAVTPVRNQGGC----GSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERR-SYGC 63
Query: 81 GGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLL 140
GG YA Q+V N GI + YPY G QC + V DG VP NNE+ L+
Sbjct: 64 RGGFPLYALQYV-ANSGIHLRQYYPYEGVQRQCRASQAKGPKVKTDGVGRVPRNNEQALI 122
Query: 141 QAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWG 200
Q + QPVS+ + RAFQ Y GIF GPC TS+DHAV VGY G DY +IKNSWG
Sbjct: 123 QRIAIQPVSIVVEAKGRAFQNYRGGIFAGPCGTSIDHAVAAVGY----GNDYILIKNSWG 178
Query: 201 RSWGMNGYMHMQRNTGNSLGICGINMLASYPTK 233
WG GY+ ++R +GN G CG+ + +PTK
Sbjct: 179 TGWGEGGYIRIKRGSGNPQGACGVLSDSVFPTK 211
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/206 (48%), Positives = 126/206 (61%), Gaps = 12/206 (5%)
Query: 29 RNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYA 88
+N+ C G+CWAFS+ GA+EG K TG L++LS Q L+DC S N GCGGG M A
Sbjct: 116 KNQGQC----GSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSENDGCGGGYMTNA 170
Query: 89 YQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVV-AQP 147
+Q+V KN GID+E YPY GQ C + GY+++PE NEK L +AV P
Sbjct: 171 FQYVQKNRGIDSEDAYPYVGQEESCMYNPTGK-AAKCRGYREIPEGNEKALKRAVARVGP 229
Query: 148 VSVGICGSERAFQLYSSGIFTGPC--STSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGM 205
VSV I S +FQ YS G++ S +L+HAVL VGY + G +WIIKNSWG +WG
Sbjct: 230 VSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGN 289
Query: 206 NGYMHMQRNTGNSLGICGINMLASYP 231
GY+ M RN N+ CGI LAS+P
Sbjct: 290 KGYILMARNKNNA---CGIANLASFP 312
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/210 (47%), Positives = 127/210 (60%), Gaps = 12/210 (5%)
Query: 25 LIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGL 84
+ +N+ C G+CWAFS+ GA+EG K TG L++LS Q L+DC S N GCGGG
Sbjct: 13 VTPVKNQGQC----GSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSENDGCGGGY 67
Query: 85 MDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVV 144
M A+Q+V KN GID+E YPY GQ C + GY+++PE NEK L +AV
Sbjct: 68 MTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGK-AAKCRGYREIPEGNEKALKRAVA 126
Query: 145 -AQPVSVGICGSERAFQLYSSGIFTGPC--STSLDHAVLIVGYDSENGVDYWIIKNSWGR 201
PVSV I S +FQ YS G++ S +L+HAVL VGY + G +WIIKNSWG
Sbjct: 127 RVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGE 186
Query: 202 SWGMNGYMHMQRNTGNSLGICGINMLASYP 231
+WG GY+ M RN N+ CGI LAS+P
Sbjct: 187 NWGNKGYILMARNKNNA---CGIANLASFP 213
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/206 (48%), Positives = 126/206 (61%), Gaps = 12/206 (5%)
Query: 29 RNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYA 88
+N+ C G+CWAFS+ GA+EG K TG L++LS Q L+DC S N GCGGG M A
Sbjct: 15 KNQGQC----GSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSENDGCGGGYMTNA 69
Query: 89 YQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVV-AQP 147
+Q+V KN GID+E YPY GQ C + GY+++PE NEK L +AV P
Sbjct: 70 FQYVQKNRGIDSEDAYPYVGQEESCMYNPTGK-AAKCRGYREIPEGNEKALKRAVARVGP 128
Query: 148 VSVGICGSERAFQLYSSGIFTGPC--STSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGM 205
VSV I S +FQ YS G++ S +L+HAVL VGY + G +WIIKNSWG +WG
Sbjct: 129 VSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGN 188
Query: 206 NGYMHMQRNTGNSLGICGINMLASYP 231
GY+ M RN N+ CGI LAS+P
Sbjct: 189 KGYILMARNKNNA---CGIANLASFP 211
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/206 (48%), Positives = 126/206 (61%), Gaps = 12/206 (5%)
Query: 29 RNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYA 88
+N+ C G+CWAFS+ GA+EG K TG L++LS Q L+DC S N GCGGG M A
Sbjct: 16 KNQGQC----GSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSENDGCGGGYMTNA 70
Query: 89 YQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVV-AQP 147
+Q+V KN GID+E YPY GQ C + GY+++PE NEK L +AV P
Sbjct: 71 FQYVQKNRGIDSEDAYPYVGQEESCMYNPTGK-AAKCRGYREIPEGNEKALKRAVARVGP 129
Query: 148 VSVGICGSERAFQLYSSGIFTGPC--STSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGM 205
VSV I S +FQ YS G++ S +L+HAVL VGY + G +WIIKNSWG +WG
Sbjct: 130 VSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGN 189
Query: 206 NGYMHMQRNTGNSLGICGINMLASYP 231
GY+ M RN N+ CGI LAS+P
Sbjct: 190 KGYILMARNKNNA---CGIANLASFP 212
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/211 (46%), Positives = 127/211 (60%), Gaps = 12/211 (5%)
Query: 25 LIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGL 84
+ +N+ C G+CWAFS+ GA+EG K TG L++LS Q L+DC S N GCGGG
Sbjct: 15 VTPVKNQGQC----GSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSENDGCGGGY 69
Query: 85 MDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVV 144
M A+Q+V KN GID+E YPY GQ C + GY+++PE NEK L +AV
Sbjct: 70 MTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGK-AAKCRGYREIPEGNEKALKRAVA 128
Query: 145 -AQPVSVGICGSERAFQLYSSGIFTGPC--STSLDHAVLIVGYDSENGVDYWIIKNSWGR 201
PVSV I S +FQ YS G++ S +L+HAVL VGY + G +WIIKNSWG
Sbjct: 129 RVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGE 188
Query: 202 SWGMNGYMHMQRNTGNSLGICGINMLASYPT 232
+WG GY+ M RN N+ CGI LAS+P
Sbjct: 189 NWGNKGYILMARNKNNA---CGIANLASFPK 216
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/206 (48%), Positives = 126/206 (61%), Gaps = 12/206 (5%)
Query: 29 RNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYA 88
+N+ C G+CWAFS+ GA+EG K TG L++LS Q L+DC S N GCGGG M A
Sbjct: 17 KNQGQC----GSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSENDGCGGGYMTNA 71
Query: 89 YQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVV-AQP 147
+Q+V +N GID+E YPY GQ C + GY+++PE NEK L +AV P
Sbjct: 72 FQYVQRNRGIDSEDAYPYVGQDESCMYNPTGK-AAKCRGYREIPEGNEKALKRAVARVGP 130
Query: 148 VSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGM 205
VSV I S +FQ YS G++ S +L+HAVL VGY + G +WIIKNSWG SWG
Sbjct: 131 VSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGIQKGNKHWIIKNSWGESWGN 190
Query: 206 NGYMHMQRNTGNSLGICGINMLASYP 231
GY+ M RN N+ CGI LAS+P
Sbjct: 191 KGYILMARNKNNA---CGIANLASFP 213
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/210 (46%), Positives = 129/210 (61%), Gaps = 12/210 (5%)
Query: 25 LIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGL 84
+ +N+ C G+CWAFS+ GA+EG K TG+L++L+ Q L+DC S N GCGGG
Sbjct: 13 VTPVKNQGQC----GSCWAFSSVGALEGQLKKATGALLNLAPQNLVDC-VSENDGCGGGY 67
Query: 85 MDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVV 144
M A+Q+V +N GID+E YPY GQ C + GY+++PE NE L +AV
Sbjct: 68 MTNAFQYVQRNRGIDSEDAYPYVGQDESCMYNPTGK-AAKCRGYREIPEGNEAALKRAVA 126
Query: 145 A-QPVSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVLIVGYDSENGVDYWIIKNSWGR 201
A PVSV I S +FQ YS+G++ S +L+HAVL VGY + G +WIIKNSWG
Sbjct: 127 AVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGIQAGNKHWIIKNSWGE 186
Query: 202 SWGMNGYMHMQRNTGNSLGICGINMLASYP 231
SWG GY+ M RN N+ CGI LAS+P
Sbjct: 187 SWGNAGYILMARNKNNA---CGIANLASFP 213
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 171 bits (433), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 123/214 (57%), Gaps = 10/214 (4%)
Query: 21 QMILLIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGC 80
Q + +N+ SC G+CWAFSA IEGI KI TG+L SEQEL+DCDR + GC
Sbjct: 9 QKGAVTPVKNQGSC----GSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR-SYGC 63
Query: 81 GGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLL 140
GG A Q V + +GI YPY G C ++ + DG + V NE LL
Sbjct: 64 NGGYPWSALQLVAQ-YGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALL 122
Query: 141 QAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWG 200
++ QPVSV + + + FQLY GIF GPC +DHAV VGY G +Y +IKNSWG
Sbjct: 123 YSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIKNSWG 178
Query: 201 RSWGMNGYMHMQRNTGNSLGICGINMLASYPTKT 234
WG NGY+ ++R TGNS G+CG+ + YP K
Sbjct: 179 TGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVKN 212
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 123/214 (57%), Gaps = 10/214 (4%)
Query: 21 QMILLIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGC 80
Q + +N+ SC G+CWAFSA IEGI KI TG+L SEQEL+DCDR + GC
Sbjct: 9 QKGAVTPVKNQGSC----GSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR-SYGC 63
Query: 81 GGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLL 140
GG A Q V + +GI YPY G C ++ + DG + V N+ LL
Sbjct: 64 NGGYPWSALQLVAQ-YGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQGALL 122
Query: 141 QAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWG 200
++ QPVSV + + + FQLY GIF GPC +DHAV VGY G +Y +IKNSWG
Sbjct: 123 YSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIKNSWG 178
Query: 201 RSWGMNGYMHMQRNTGNSLGICGINMLASYPTKT 234
WG NGY+ ++R TGNS G+CG+ + YP K
Sbjct: 179 TGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVKN 212
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 123/214 (57%), Gaps = 10/214 (4%)
Query: 21 QMILLIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGC 80
Q + +N+ SC G+CWAFSA IEGI KI TG+L SEQEL+DCDR + GC
Sbjct: 9 QKGAVTPVKNQGSC----GSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR-SYGC 63
Query: 81 GGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLL 140
GG A Q V + +GI YPY G C ++ + DG + V N+ LL
Sbjct: 64 NGGYPWSALQLVAQ-YGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQGALL 122
Query: 141 QAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWG 200
++ QPVSV + + + FQLY GIF GPC +DHAV VGY G +Y +IKNSWG
Sbjct: 123 YSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIKNSWG 178
Query: 201 RSWGMNGYMHMQRNTGNSLGICGINMLASYPTKT 234
WG NGY+ ++R TGNS G+CG+ + YP K
Sbjct: 179 TGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVKN 212
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 169 bits (427), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/197 (45%), Positives = 120/197 (60%), Gaps = 8/197 (4%)
Query: 39 GACWAFSATGAIEGINKIVTGSLVSLSEQELIDC--DRSYNSGCGGGLMDYAYQFVIKNH 96
GACWAFSA GA+E K+ TG LVSLS Q L+DC ++ N GC GG M A+Q++I N
Sbjct: 23 GACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNK 82
Query: 97 GIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQ-PVSVGICGS 155
GID++ YPY+ +C R T Y ++P E L +AV + PVSVG+
Sbjct: 83 GIDSDASYPYKAMDQKCQYDSKYR-AATCSKYTELPYGREDVLKEAVANKGPVSVGVDAR 141
Query: 156 ERAFQLYSSGIFTGP-CSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRN 214
+F LY SG++ P C+ +++H VL+VGY NG +YW++KNSWG ++G GY+ M RN
Sbjct: 142 HPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARN 201
Query: 215 TGNSLGICGINMLASYP 231
GN CGI SYP
Sbjct: 202 KGNH---CGIASFPSYP 215
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/197 (45%), Positives = 120/197 (60%), Gaps = 8/197 (4%)
Query: 39 GACWAFSATGAIEGINKIVTGSLVSLSEQELIDC--DRSYNSGCGGGLMDYAYQFVIKNH 96
GACWAFSA GA+E K+ TG LVSLS Q L+DC ++ N GC GG M A+Q++I N
Sbjct: 23 GACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNK 82
Query: 97 GIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQ-PVSVGICGS 155
GID++ YPY+ +C R T Y ++P E L +AV + PVSVG+
Sbjct: 83 GIDSDASYPYKAMDQKCQYDSKYR-AATCSKYTELPYGREDVLKEAVANKGPVSVGVDAR 141
Query: 156 ERAFQLYSSGIFTGP-CSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRN 214
+F LY SG++ P C+ +++H VL+VGY NG +YW++KNSWG ++G GY+ M RN
Sbjct: 142 HPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARN 201
Query: 215 TGNSLGICGINMLASYP 231
GN CGI SYP
Sbjct: 202 KGNH---CGIASFPSYP 215
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/197 (45%), Positives = 120/197 (60%), Gaps = 8/197 (4%)
Query: 39 GACWAFSATGAIEGINKIVTGSLVSLSEQELIDC--DRSYNSGCGGGLMDYAYQFVIKNH 96
GACWAFSA GA+E K+ TG LVSLS Q L+DC ++ N GC GG M A+Q++I N
Sbjct: 24 GACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNK 83
Query: 97 GIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQ-PVSVGICGS 155
GID++ YPY+ +C R T Y ++P E L +AV + PVSVG+
Sbjct: 84 GIDSDASYPYKAMDQKCQYDSKYR-AATCSKYTELPYGREDVLKEAVANKGPVSVGVDAR 142
Query: 156 ERAFQLYSSGIFTGP-CSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRN 214
+F LY SG++ P C+ +++H VL+VGY NG +YW++KNSWG ++G GY+ M RN
Sbjct: 143 HPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARN 202
Query: 215 TGNSLGICGINMLASYP 231
GN CGI SYP
Sbjct: 203 KGNH---CGIASFPSYP 216
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/197 (45%), Positives = 120/197 (60%), Gaps = 8/197 (4%)
Query: 39 GACWAFSATGAIEGINKIVTGSLVSLSEQELIDC--DRSYNSGCGGGLMDYAYQFVIKNH 96
GACWAFSA GA+E K+ TG LVSLS Q L+DC ++ N GC GG M A+Q++I N
Sbjct: 26 GACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNK 85
Query: 97 GIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQ-PVSVGICGS 155
GID++ YPY+ +C R T Y ++P E L +AV + PVSVG+
Sbjct: 86 GIDSDASYPYKAMDQKCQYDSKYR-AATCSKYTELPYGREDVLKEAVANKGPVSVGVDAR 144
Query: 156 ERAFQLYSSGIFTGP-CSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRN 214
+F LY SG++ P C+ +++H VL+VGY NG +YW++KNSWG ++G GY+ M RN
Sbjct: 145 HPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARN 204
Query: 215 TGNSLGICGINMLASYP 231
GN CGI SYP
Sbjct: 205 KGNH---CGIASFPSYP 218
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 89/197 (45%), Positives = 120/197 (60%), Gaps = 8/197 (4%)
Query: 39 GACWAFSATGAIEGINKIVTGSLVSLSEQELIDC--DRSYNSGCGGGLMDYAYQFVIKNH 96
GACWAFSA GA+E K+ TG LVSLS Q L+DC ++ N GC GG M A+Q++I N
Sbjct: 23 GACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNK 82
Query: 97 GIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQ-PVSVGICGS 155
GID++ YPY+ +C R T Y ++P E L +AV + PVSVG+
Sbjct: 83 GIDSDASYPYKAMDQKCQYDSKYR-AATCRKYTELPYGREDVLKEAVANKGPVSVGVDAR 141
Query: 156 ERAFQLYSSGIFTGP-CSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRN 214
+F LY SG++ P C+ +++H VL+VGY NG +YW++KNSWG ++G GY+ M RN
Sbjct: 142 HPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARN 201
Query: 215 TGNSLGICGINMLASYP 231
GN CGI SYP
Sbjct: 202 KGNH---CGIASFPSYP 215
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 89/197 (45%), Positives = 120/197 (60%), Gaps = 8/197 (4%)
Query: 39 GACWAFSATGAIEGINKIVTGSLVSLSEQELIDC--DRSYNSGCGGGLMDYAYQFVIKNH 96
GACWAFSA GA+E K+ TG LVSLS Q L+DC ++ N GC GG M A+Q++I N
Sbjct: 24 GACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNK 83
Query: 97 GIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQ-PVSVGICGS 155
GID++ YPY+ +C R T Y ++P E L +AV + PVSVG+
Sbjct: 84 GIDSDASYPYKAMDQKCQYDSKYR-AATCSKYTELPYGREDVLKEAVANKGPVSVGVDAR 142
Query: 156 ERAFQLYSSGIFTGP-CSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRN 214
+F LY SG++ P C+ +++H VL+VGY NG +YW++KNSWG ++G GY+ M RN
Sbjct: 143 HPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARN 202
Query: 215 TGNSLGICGINMLASYP 231
GN CGI SYP
Sbjct: 203 KGNH---CGIASFPSYP 216
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 168 bits (425), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 90/197 (45%), Positives = 120/197 (60%), Gaps = 8/197 (4%)
Query: 39 GACWAFSATGAIEGINKIVTGSLVSLSEQELIDCD-RSY-NSGCGGGLMDYAYQFVIKNH 96
GACWAFSA GA+E K+ TG LVSLS Q L+DC + Y N GC GG M A+Q++I N
Sbjct: 23 GACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKKYGNKGCNGGFMTTAFQYIIDNK 82
Query: 97 GIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQ-PVSVGICGS 155
GID++ YPY+ +C R T Y ++P E L +AV + PVSVG+
Sbjct: 83 GIDSDASYPYKAMDQKCQYDSAYR-AATCRKYTELPYGREDVLKEAVANKGPVSVGVDAR 141
Query: 156 ERAFQLYSSGIFTGP-CSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRN 214
+F LY SG++ P C+ +++H VL+VGY NG +YW++KNSWG ++G GY+ M RN
Sbjct: 142 HPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARN 201
Query: 215 TGNSLGICGINMLASYP 231
GN CGI SYP
Sbjct: 202 KGNH---CGIASFPSYP 215
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 167 bits (424), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 122/214 (57%), Gaps = 10/214 (4%)
Query: 21 QMILLIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGC 80
Q + +N+ SC G+ WAFSA IEGI KI TG+L SEQEL+DCDR + GC
Sbjct: 9 QKGAVTPVKNQGSC----GSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR-SYGC 63
Query: 81 GGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLL 140
GG A Q V + +GI YPY G C ++ + DG + V NE LL
Sbjct: 64 NGGYPWSALQLVAQ-YGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALL 122
Query: 141 QAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWG 200
++ QPVSV + + + FQLY GIF GPC +DHAV VGY G +Y +IKNSWG
Sbjct: 123 YSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIKNSWG 178
Query: 201 RSWGMNGYMHMQRNTGNSLGICGINMLASYPTKT 234
WG NGY+ ++R TGNS G+CG+ + YP K
Sbjct: 179 TGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVKN 212
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 167 bits (424), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 120/197 (60%), Gaps = 8/197 (4%)
Query: 39 GACWAFSATGAIEGINKIVTGSLVSLSEQELIDC--DRSYNSGCGGGLMDYAYQFVIKNH 96
GACWAFSA GA+E K+ TG LV+LS Q L+DC ++ N GC GG M A+Q++I N
Sbjct: 23 GACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNK 82
Query: 97 GIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQ-PVSVGICGS 155
GID++ YPY+ +C R T Y ++P E L +AV + PVSVG+
Sbjct: 83 GIDSDASYPYKAMDQKCQYDSKYR-AATCSKYTELPYGREDVLKEAVANKGPVSVGVDAR 141
Query: 156 ERAFQLYSSGIFTGP-CSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRN 214
+F LY SG++ P C+ +++H VL+VGY NG +YW++KNSWG ++G GY+ M RN
Sbjct: 142 HPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARN 201
Query: 215 TGNSLGICGINMLASYP 231
GN CGI SYP
Sbjct: 202 KGNH---CGIASFPSYP 215
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 167 bits (424), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 122/214 (57%), Gaps = 10/214 (4%)
Query: 21 QMILLIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGC 80
Q + +N+ SC G+ WAFSA IEGI KI TG+L SEQEL+DCDR + GC
Sbjct: 9 QKGAVTPVKNQGSC----GSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR-SYGC 63
Query: 81 GGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLL 140
GG A Q V + +GI YPY G C ++ + DG + V NE LL
Sbjct: 64 NGGYPWSALQLVAQ-YGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALL 122
Query: 141 QAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWG 200
++ QPVSV + + + FQLY GIF GPC +DHAV VGY G +Y +IKNSWG
Sbjct: 123 YSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIKNSWG 178
Query: 201 RSWGMNGYMHMQRNTGNSLGICGINMLASYPTKT 234
WG NGY+ ++R TGNS G+CG+ + YP K
Sbjct: 179 TGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVKN 212
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 122/214 (57%), Gaps = 10/214 (4%)
Query: 21 QMILLIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGC 80
Q + +N+ SC G+ WAFSA IEGI KI TG+L SEQEL+DCDR + GC
Sbjct: 9 QKGAVTPVKNQGSC----GSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR-SYGC 63
Query: 81 GGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLL 140
GG A Q V + +GI YPY G C ++ + DG + V N+ LL
Sbjct: 64 NGGYPWSALQLVAQ-YGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQGALL 122
Query: 141 QAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWG 200
++ QPVSV + + + FQLY GIF GPC +DHAV VGY G +Y +IKNSWG
Sbjct: 123 YSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIKNSWG 178
Query: 201 RSWGMNGYMHMQRNTGNSLGICGINMLASYPTKT 234
WG NGY+ ++R TGNS G+CG+ + YP K
Sbjct: 179 TGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVKN 212
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 119/197 (60%), Gaps = 8/197 (4%)
Query: 39 GACWAFSATGAIEGINKIVTGSLVSLSEQELIDC--DRSYNSGCGGGLMDYAYQFVIKNH 96
GA WAFSA GA+E K+ TG LVSLS Q L+DC ++ N GC GG M A+Q++I N
Sbjct: 121 GAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNK 180
Query: 97 GIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQ-PVSVGICGS 155
GID++ YPY+ +C R T Y ++P E L +AV + PVSVG+
Sbjct: 181 GIDSDASYPYKAMDQKCQYDSKYR-AATCSKYTELPYGREDVLKEAVANKGPVSVGVDAR 239
Query: 156 ERAFQLYSSGIFTGP-CSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRN 214
+F LY SG++ P C+ +++H VL+VGY NG +YW++KNSWG ++G GY+ M RN
Sbjct: 240 HPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARN 299
Query: 215 TGNSLGICGINMLASYP 231
GN CGI SYP
Sbjct: 300 KGNH---CGIASFPSYP 313
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/205 (44%), Positives = 119/205 (58%), Gaps = 10/205 (4%)
Query: 29 RNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYA 88
+N+ SC G+ WAFSA IE I KI TG+L SEQEL+DCDR + GC GG A
Sbjct: 168 KNQGSC----GSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRR-SYGCNGGYPWSA 222
Query: 89 YQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQPV 148
Q V + +GI YPY G C ++ + DG + V NE LL ++ QPV
Sbjct: 223 LQLVAQ-YGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPV 281
Query: 149 SVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGY 208
SV + + + FQLY GIF GPC +DHAV VGY G +Y +I+NSWG WG NGY
Sbjct: 282 SVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIRNSWGTGWGENGY 337
Query: 209 MHMQRNTGNSLGICGINMLASYPTK 233
+ ++R TGNS G+CG+ + YP K
Sbjct: 338 IRIKRGTGNSYGVCGLYTSSFYPVK 362
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 119/197 (60%), Gaps = 8/197 (4%)
Query: 39 GACWAFSATGAIEGINKIVTGSLVSLSEQELIDC--DRSYNSGCGGGLMDYAYQFVIKNH 96
GA WAFSA GA+E K+ TG LVSLS Q L+DC ++ N GC GG M A+Q++I N
Sbjct: 23 GASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNK 82
Query: 97 GIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQ-PVSVGICGS 155
GID++ YPY+ +C R T Y ++P E L +AV + PVSVG+
Sbjct: 83 GIDSDASYPYKAMDQKCQYDSKYR-AATCSKYTELPYGREDVLKEAVANKGPVSVGVDAR 141
Query: 156 ERAFQLYSSGIFTGP-CSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRN 214
+F LY SG++ P C+ +++H VL+VGY NG +YW++KNSWG ++G GY+ M RN
Sbjct: 142 HPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARN 201
Query: 215 TGNSLGICGINMLASYP 231
GN CGI SYP
Sbjct: 202 KGNH---CGIASFPSYP 215
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 119/197 (60%), Gaps = 8/197 (4%)
Query: 39 GACWAFSATGAIEGINKIVTGSLVSLSEQELIDC--DRSYNSGCGGGLMDYAYQFVIKNH 96
GA WAFSA GA+E K+ TG LVSLS Q L+DC ++ N GC GG M A+Q++I N
Sbjct: 24 GASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNK 83
Query: 97 GIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQ-PVSVGICGS 155
GID++ YPY+ +C R T Y ++P E L +AV + PVSVG+
Sbjct: 84 GIDSDASYPYKAMDQKCQYDSKYR-AATCSKYTELPYGREDVLKEAVANKGPVSVGVDAR 142
Query: 156 ERAFQLYSSGIFTGP-CSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRN 214
+F LY SG++ P C+ +++H VL+VGY NG +YW++KNSWG ++G GY+ M RN
Sbjct: 143 HPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARN 202
Query: 215 TGNSLGICGINMLASYP 231
GN CGI SYP
Sbjct: 203 KGNH---CGIASFPSYP 216
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 119/197 (60%), Gaps = 8/197 (4%)
Query: 39 GACWAFSATGAIEGINKIVTGSLVSLSEQELIDC--DRSYNSGCGGGLMDYAYQFVIKNH 96
GA WAFSA GA+E K+ TG LVSLS Q L+DC ++ N GC GG M A+Q++I N
Sbjct: 25 GASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNK 84
Query: 97 GIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQ-PVSVGICGS 155
GID++ YPY+ +C R T Y ++P E L +AV + PVSVG+
Sbjct: 85 GIDSDASYPYKAMDQKCQYDSKYR-AATCSKYTELPYGREDVLKEAVANKGPVSVGVDAR 143
Query: 156 ERAFQLYSSGIFTGP-CSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRN 214
+F LY SG++ P C+ +++H VL+VGY NG +YW++KNSWG ++G GY+ M RN
Sbjct: 144 HPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARN 203
Query: 215 TGNSLGICGINMLASYP 231
GN CGI SYP
Sbjct: 204 KGNH---CGIASFPSYP 217
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/212 (44%), Positives = 122/212 (57%), Gaps = 17/212 (8%)
Query: 29 RNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY-NSGCGGGLMDY 87
+N+ C G+CWAFSATGA+EG TG L+SLSEQ L+DC N GC GGLMDY
Sbjct: 55 KNQGQC----GSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDY 110
Query: 88 AYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-Q 146
A+Q+V N G+D+E+ YPY C K + G+ D+P+ EK L++AV
Sbjct: 111 AFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDAGFVDIPK-QEKALMKAVATVG 168
Query: 147 PVSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVLIVGYDSE----NGVDYWIIKNSWG 200
P+SV I +F Y GI+ P S +DH VL+VGY E + YW++KNSWG
Sbjct: 169 PISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWG 228
Query: 201 RSWGMNGYMHMQRNTGNSLGICGINMLASYPT 232
WGM GY+ M ++ N CGI ASYPT
Sbjct: 229 EEWGMGGYVKMAKDRRNH---CGIASAASYPT 257
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/212 (44%), Positives = 122/212 (57%), Gaps = 17/212 (8%)
Query: 29 RNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY-NSGCGGGLMDY 87
+N+ C G+CWAFSATGA+EG TG L+SLSEQ L+DC N GC GGLMDY
Sbjct: 18 KNQGQC----GSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDY 73
Query: 88 AYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-Q 146
A+Q+V N G+D+E+ YPY C K + G+ D+P+ EK L++AV
Sbjct: 74 AFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIPK-QEKALMKAVATVG 131
Query: 147 PVSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVLIVGYDSE----NGVDYWIIKNSWG 200
P+SV I +F Y GI+ P S +DH VL+VGY E + YW++KNSWG
Sbjct: 132 PISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWG 191
Query: 201 RSWGMNGYMHMQRNTGNSLGICGINMLASYPT 232
WGM GY+ M ++ N CGI ASYPT
Sbjct: 192 EEWGMGGYVKMAKDRRNH---CGIASAASYPT 220
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/212 (44%), Positives = 122/212 (57%), Gaps = 17/212 (8%)
Query: 29 RNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY-NSGCGGGLMDY 87
+N+ C G+CWAFSATGA+EG TG L+SLSEQ L+DC N GC GGLMDY
Sbjct: 17 KNQGQC----GSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDY 72
Query: 88 AYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-Q 146
A+Q+V N G+D+E+ YPY C K + G+ D+P+ EK L++AV
Sbjct: 73 AFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIPK-QEKALMKAVATVG 130
Query: 147 PVSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVLIVGYDSE----NGVDYWIIKNSWG 200
P+SV I +F Y GI+ P S +DH VL+VGY E + YW++KNSWG
Sbjct: 131 PISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWG 190
Query: 201 RSWGMNGYMHMQRNTGNSLGICGINMLASYPT 232
WGM GY+ M ++ N CGI ASYPT
Sbjct: 191 EEWGMGGYVKMAKDRRNH---CGIASAASYPT 219
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/212 (44%), Positives = 122/212 (57%), Gaps = 17/212 (8%)
Query: 29 RNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY-NSGCGGGLMDY 87
+N+ C G+CWAFSATGA+EG TG L+SLSEQ L+DC N GC GGLMDY
Sbjct: 17 KNQGQC----GSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDY 72
Query: 88 AYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-Q 146
A+Q+V N G+D+E+ YPY C K + G+ D+P+ EK L++AV
Sbjct: 73 AFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDAGFVDIPK-QEKALMKAVATVG 130
Query: 147 PVSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVLIVGYDSE----NGVDYWIIKNSWG 200
P+SV I +F Y GI+ P S +DH VL+VGY E + YW++KNSWG
Sbjct: 131 PISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWG 190
Query: 201 RSWGMNGYMHMQRNTGNSLGICGINMLASYPT 232
WGM GY+ M ++ N CGI ASYPT
Sbjct: 191 EEWGMGGYVKMAKDRRNH---CGIASAASYPT 219
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 119/197 (60%), Gaps = 8/197 (4%)
Query: 39 GACWAFSATGAIEGINKIVTGSLVSLSEQELIDC--DRSYNSGCGGGLMDYAYQFVIKNH 96
GA WAFSA GA+E K+ TG LVSLS Q L+DC ++ N GC GG M A+Q++I N
Sbjct: 23 GASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNK 82
Query: 97 GIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQ-PVSVGICGS 155
GID++ YPY+ +C R T Y ++P E L +AV + PVSVG+
Sbjct: 83 GIDSDASYPYKAMDLKCQYDSKYR-AATCSKYTELPYGREDVLKEAVANKGPVSVGVDAR 141
Query: 156 ERAFQLYSSGIFTGP-CSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRN 214
+F LY SG++ P C+ +++H VL+VGY NG +YW++KNSWG ++G GY+ M RN
Sbjct: 142 HPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARN 201
Query: 215 TGNSLGICGINMLASYP 231
GN CGI SYP
Sbjct: 202 KGNH---CGIASFPSYP 215
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/212 (44%), Positives = 122/212 (57%), Gaps = 17/212 (8%)
Query: 29 RNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY-NSGCGGGLMDY 87
+N+ C G+ WAFSATGA+EG TG L+SLSEQ L+DC N GC GGLMDY
Sbjct: 109 KNQGQC----GSSWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDY 164
Query: 88 AYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-Q 146
A+Q+V N G+D+E+ YPY C K + G+ D+P+ EK L++AV
Sbjct: 165 AFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDAGFVDIPK-QEKALMKAVATVG 222
Query: 147 PVSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVLIVGYDSE----NGVDYWIIKNSWG 200
P+SV I +F Y GI+ P S +DH VL+VGY E +G YW++KNSWG
Sbjct: 223 PISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWG 282
Query: 201 RSWGMNGYMHMQRNTGNSLGICGINMLASYPT 232
WGM GY+ M ++ N CGI ASYPT
Sbjct: 283 EEWGMGGYVKMAKDRRNH---CGIASAASYPT 311
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/198 (46%), Positives = 120/198 (60%), Gaps = 10/198 (5%)
Query: 39 GACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY-NSGCGGGLMDYAYQFVIKNHG 97
G+ W+FS TGA+EG + G L SLSEQ LIDC SY N+GC GG MD A+ + I ++G
Sbjct: 137 GSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSY-IHDYG 195
Query: 98 IDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAV-VAQPVSVGICGSE 156
I +E YPY Q C + ++ + T+ GY D+P +E L AV A PV+V I ++
Sbjct: 196 IMSESAYPYEAQGDYC-RFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDATD 254
Query: 157 RAFQLYSSGIFTGPC--STSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRN 214
Q YS G+F + L+H VL+VGY S+NG DYWI+KNSWG WG +GY RN
Sbjct: 255 E-LQFYSGGLFYDQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVRN 313
Query: 215 TGNSLGICGINMLASYPT 232
GN+ CGI ASYP
Sbjct: 314 YGNN---CGIATAASYPA 328
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 121/212 (57%), Gaps = 17/212 (8%)
Query: 29 RNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY-NSGCGGGLMDY 87
+N+ C G+ WAFSATGA+EG TG L+SLSEQ L+DC N GC GGLMDY
Sbjct: 17 KNQGQC----GSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDY 72
Query: 88 AYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-Q 146
A+Q+V N G+D+E+ YPY C K + G+ D+P+ EK L++AV
Sbjct: 73 AFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIPK-QEKALMKAVATVG 130
Query: 147 PVSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVLIVGYDSE----NGVDYWIIKNSWG 200
P+SV I +F Y GI+ P S +DH VL+VGY E + YW++KNSWG
Sbjct: 131 PISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWG 190
Query: 201 RSWGMNGYMHMQRNTGNSLGICGINMLASYPT 232
WGM GY+ M ++ N CGI ASYPT
Sbjct: 191 EEWGMGGYVKMAKDRRNH---CGIASAASYPT 219
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 121/212 (57%), Gaps = 17/212 (8%)
Query: 29 RNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY-NSGCGGGLMDY 87
+N+ C G+ WAFSATGA+EG TG L+SLSEQ L+DC N GC GGLMDY
Sbjct: 18 KNQGQC----GSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDY 73
Query: 88 AYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-Q 146
A+Q+V N G+D+E+ YPY C K + G+ D+P+ EK L++AV
Sbjct: 74 AFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIPK-QEKALMKAVATVG 131
Query: 147 PVSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVLIVGYDSE----NGVDYWIIKNSWG 200
P+SV I +F Y GI+ P S +DH VL+VGY E + YW++KNSWG
Sbjct: 132 PISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWG 191
Query: 201 RSWGMNGYMHMQRNTGNSLGICGINMLASYPT 232
WGM GY+ M ++ N CGI ASYPT
Sbjct: 192 EEWGMGGYVKMAKDRRNH---CGIASAASYPT 220
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 121/212 (57%), Gaps = 17/212 (8%)
Query: 29 RNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY-NSGCGGGLMDY 87
+N+ C G+ WAFSATGA+EG TG L+SLSEQ L+DC N GC GGLMDY
Sbjct: 113 KNQGQC----GSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDY 168
Query: 88 AYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-Q 146
A+Q+V N G+D+E+ YPY C K + G+ D+P+ EK L++AV
Sbjct: 169 AFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDAGFVDIPK-QEKALMKAVATVG 226
Query: 147 PVSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVLIVGYDSE----NGVDYWIIKNSWG 200
P+SV I +F Y GI+ P S +DH VL+VGY E + YW++KNSWG
Sbjct: 227 PISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWG 286
Query: 201 RSWGMNGYMHMQRNTGNSLGICGINMLASYPT 232
WGM GY+ M ++ N CGI ASYPT
Sbjct: 287 EEWGMGGYVKMAKDRRNH---CGIASAASYPT 315
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 121/212 (57%), Gaps = 17/212 (8%)
Query: 29 RNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY-NSGCGGGLMDY 87
+N+ C G+ WAFSATGA+EG TG L+SLSEQ L+DC N GC GGLMDY
Sbjct: 17 KNQGQC----GSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDY 72
Query: 88 AYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-Q 146
A+Q+V N G+D+E+ YPY C K + G+ D+P+ EK L++AV
Sbjct: 73 AFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIPK-QEKALMKAVATVG 130
Query: 147 PVSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVLIVGYDSE----NGVDYWIIKNSWG 200
P+SV I +F Y GI+ P S +DH VL+VGY E + YW++KNSWG
Sbjct: 131 PISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWG 190
Query: 201 RSWGMNGYMHMQRNTGNSLGICGINMLASYPT 232
WGM GY+ M ++ N CGI ASYPT
Sbjct: 191 EEWGMGGYVKMAKDRRNH---CGIASAASYPT 219
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 161 bits (408), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 121/212 (57%), Gaps = 17/212 (8%)
Query: 29 RNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY-NSGCGGGLMDY 87
+N+ C G+ WAFSATGA+EG TG L+SLSEQ L+DC N GC GGLMDY
Sbjct: 17 KNQGQC----GSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDY 72
Query: 88 AYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-Q 146
A+Q+V N G+D+E+ YPY C K + G+ D+P+ EK L++AV
Sbjct: 73 AFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDAGFVDIPK-QEKALMKAVATVG 130
Query: 147 PVSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVLIVGYDSE----NGVDYWIIKNSWG 200
P+SV I +F Y GI+ P S +DH VL+VGY E + YW++KNSWG
Sbjct: 131 PISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDDNKYWLVKNSWG 190
Query: 201 RSWGMNGYMHMQRNTGNSLGICGINMLASYPT 232
WGM GY+ M ++ N CGI ASYPT
Sbjct: 191 EEWGMGGYVKMAKDRRNH---CGIASAASYPT 219
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 161 bits (407), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/195 (47%), Positives = 116/195 (59%), Gaps = 4/195 (2%)
Query: 40 ACWAFSATGAIEGINKIVTGSLVSLSEQELIDCD-RSYNSGCGGGLMDYAYQFVIKNHGI 98
+CWAFS +EGINKI TG+LV LSEQEL+DCD +SY GC G + Q+V +N GI
Sbjct: 24 SCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQSY--GCNRGYQSTSLQYVAQN-GI 80
Query: 99 DTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQPVSVGICGSERA 158
YPY + C ++ V +G V NNE LL A+ QPVSV + + R
Sbjct: 81 HLRAKYPYIAKQQTCRANQVGGPKVKTNGVGRVQSNNEGSLLNAIAHQPVSVVVESAGRD 140
Query: 159 FQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNS 218
FQ Y GIF G C T +DHAV VGY G Y +IKNSWG WG NGY+ ++R +GNS
Sbjct: 141 FQNYKGGIFEGSCGTKVDHAVTAVGYGKSGGKGYILIKNSWGPGWGENGYIRIRRASGNS 200
Query: 219 LGICGINMLASYPTK 233
G+CG+ + YP K
Sbjct: 201 PGVCGVYRSSYYPIK 215
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 121/212 (57%), Gaps = 16/212 (7%)
Query: 29 RNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY-NSGCGGGLMDY 87
+N+ C G+CWAFSATGA+EG TG LVSLSEQ L+DC R N GC GG M
Sbjct: 17 KNQKQC----GSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMAR 72
Query: 88 AYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-Q 146
A+Q+V +N G+D+E+ YPY C K + + G+ V EK L++AV
Sbjct: 73 AFQYVKENGGLDSEESYPYVAVDEIC-KYRPENSVAQDTGFTVVAPGKEKALMKAVATVG 131
Query: 147 PVSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVLIVGYDSE----NGVDYWIIKNSWG 200
P+SV + +FQ Y SGI+ P S +LDH VL+VGY E + YW++KNSWG
Sbjct: 132 PISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWG 191
Query: 201 RSWGMNGYMHMQRNTGNSLGICGINMLASYPT 232
WG NGY+ + ++ N CGI ASYP
Sbjct: 192 PEWGSNGYVKIAKDKNNH---CGIATAASYPN 220
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 120/212 (56%), Gaps = 16/212 (7%)
Query: 29 RNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY-NSGCGGGLMDY 87
+N+ C G+ WAFSATGA+EG TG LVSLSEQ L+DC R N GC GG M
Sbjct: 17 KNQKQC----GSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMAR 72
Query: 88 AYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-Q 146
A+Q+V +N G+D+E+ YPY C K + + G+ V EK L++AV
Sbjct: 73 AFQYVKENGGLDSEESYPYVAVDEIC-KYRPENSVAQDTGFTVVAPGKEKALMKAVATVG 131
Query: 147 PVSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVLIVGYDSE----NGVDYWIIKNSWG 200
P+SV + +FQ Y SGI+ P S +LDH VL+VGY E + YW++KNSWG
Sbjct: 132 PISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWG 191
Query: 201 RSWGMNGYMHMQRNTGNSLGICGINMLASYPT 232
WG NGY+ + ++ N CGI ASYP
Sbjct: 192 PEWGSNGYVKIAKDKNNH---CGIATAASYPN 220
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 154 bits (389), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 93/209 (44%), Positives = 123/209 (58%), Gaps = 14/209 (6%)
Query: 29 RNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY-NSGCGGGLMDY 87
+N+ C GA +AFSATGA+EG TG L+SLSEQ L+DC N GC GGLMDY
Sbjct: 17 KNQGQC----GASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDY 72
Query: 88 AYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-Q 146
A+Q+V N G+D+E+ YPY C K + G+ D+P+ EK L++AV
Sbjct: 73 AFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDVGFVDIPK-QEKALMKAVATVG 130
Query: 147 PVSVGICGSERAFQLYSSGIF--TGPCSTSLDHAVLIVGYDS-ENGVDYWIIKNSWGRSW 203
P+SV I +F Y GI+ + S+SL+HA+L+VGY N YW++KNSWG W
Sbjct: 131 PISVAIDAGHESFLFYKEGIYFSSDCSSSSLNHAMLVVGYGFISNNQKYWLVKNSWGEEW 190
Query: 204 GMNGYMHMQRNTGNSLGICGINMLASYPT 232
GM GY+ M ++ N CGI ASYPT
Sbjct: 191 GMGGYVKMAKDRRNH---CGIASAASYPT 216
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 124/209 (59%), Gaps = 16/209 (7%)
Query: 29 RNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNS-GCGGGLMDY 87
+N+ SC G+CW FS TGA+E I TG ++SL+EQ+L+DC +++N+ GC GGL
Sbjct: 18 KNQGSC----GSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQ 73
Query: 88 AYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAV-VAQ 146
A++++ N GI E YPY+GQ C Q ++ I + ++ N+E+ +++AV +
Sbjct: 74 AFEYIRYNKGIMGEDTYPYKGQDDHCKFQP-DKAIAFVKDVANITMNDEEAMVEAVALYN 132
Query: 147 PVSVGICGSERAFQLYSSGIFTG----PCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRS 202
PVS + F +Y GI++ ++HAVL VGY ENG+ YWI+KNSWG
Sbjct: 133 PVSFAFEVTND-FLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQ 191
Query: 203 WGMNGYMHMQRNTGNSLGICGINMLASYP 231
WGMNGY ++R +CG+ ASYP
Sbjct: 192 WGMNGYFLIERGK----NMCGLAACASYP 216
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 151 bits (382), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 115/196 (58%), Gaps = 8/196 (4%)
Query: 39 GACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY-NSGCGGGLMDYAYQFVIKNHG 97
G+ WAFS TG +EG + +S SEQ+L+DC R + N+GCGGGLM+ AYQ+ +K G
Sbjct: 114 GSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQY-LKQFG 172
Query: 98 IDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQPVSVGICGSER 157
++TE YPY GQC K + + G+ V +E +L V A+ + E
Sbjct: 173 LETESSYPYTAVEGQCRYNK-QLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVES 231
Query: 158 AFQLYSSGIFTGPCSTSL--DHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNT 215
F +Y SGI+ + L +HAVL VGY ++ G DYWI+KNSWG SWG GY+ M RN
Sbjct: 232 DFMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNR 291
Query: 216 GNSLGICGINMLASYP 231
GN +CGI LAS P
Sbjct: 292 GN---MCGIASLASLP 304
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 132/242 (54%), Gaps = 24/242 (9%)
Query: 3 PNYVLEDLAL-------LSFTGHKLQMILLIQFRNKSSCLYLLGACWAFSATGAIEGINK 55
P EDL L SF M+ + +N+ SC G+ WAFS+TGAIE K
Sbjct: 101 PIKTREDLGLNASVRYPASFDWRDQGMVSPV--KNQGSC----GSSWAFSSTGAIESQMK 154
Query: 56 IVTGSLV--SLSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQC 113
I G+ S+SEQ+L+DC + GC GG M+ A+ +V +N GID+E YPY G C
Sbjct: 155 IANGAGYDSSVSEQQLVDCVPN-ALGCSGGWMNDAFTYVAQNGGIDSEGAYPYEMADGNC 213
Query: 114 NKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGP-C 171
+ N+ + GY + +E L V + PV+V ++ F YS G++ P C
Sbjct: 214 HYDP-NQVAARLSGYVYLSGPDENMLADMVATKGPVAVAF-DADDPFGSYSGGVYYNPTC 271
Query: 172 STS-LDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASY 230
T+ HAVLIVGY +ENG DYW++KNSWG WG++GY + RN N GI G+ AS
Sbjct: 272 ETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGIAGV---ASV 328
Query: 231 PT 232
PT
Sbjct: 329 PT 330
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 108/181 (59%), Gaps = 7/181 (3%)
Query: 39 GACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHG- 97
G+CWAFS G IEG ++ LVSLSEQ L+ CD + + GCGGGLMD A+ +++ ++G
Sbjct: 23 GSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCD-TIDFGCGGGLMDNAFNWIVNSNGG 81
Query: 98 -IDTEKDYPYRGQAGQCNKQKLNRHIV--TIDGYKDVPENNEKQLLQAVVAQPVSVGICG 154
+ TE YPY G+ + ++N H + I + D+P+ ++ + A +A+ + I
Sbjct: 82 NVFTEASYPYVSGNGEQPQCQMNGHEIGAAITDHVDLPQ--DEDAIAAYLAENGPLAIAV 139
Query: 155 SERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRN 214
+F Y+ GI T S LDH VL+VGY+ + YWIIKNSW WG +GY+ +++
Sbjct: 140 DATSFMDYNGGILTSCTSEQLDHGVLLVGYNDASNPPYWIIKNSWSNMWGEDGYIRIEKG 199
Query: 215 T 215
T
Sbjct: 200 T 200
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 95/164 (57%), Gaps = 10/164 (6%)
Query: 29 RNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY-NSGCGGGLMDY 87
+N+ C G+CWAFSATGA+EG TG L+SLSEQ L+DC N GC GGLMDY
Sbjct: 17 KNQGQC----GSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDY 72
Query: 88 AYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-Q 146
A+Q+V N G+D+E+ YPY C K + G+ D+P+ EK L++AV
Sbjct: 73 AFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIPK-QEKALMKAVATVG 130
Query: 147 PVSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVLIVGYDSEN 188
P+SV I +F Y GI+ P S +DH VL+VGY E+
Sbjct: 131 PISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFES 174
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 113/204 (55%), Gaps = 16/204 (7%)
Query: 39 GACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHGI 98
G+CWAFS+ G++E I L++LSEQEL+DC N GC GGL++ A++ +I+ GI
Sbjct: 40 GSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFK-NYGCNGGLINNAFEDMIELGGI 98
Query: 99 DTEKDYPYRGQAGQ-CNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQPVSVGICGSER 157
+ DYPY A CN + I Y VP+N K+ L+ + P+S+ + S+
Sbjct: 99 CPDGDYPYVSDAPNLCNIDRCTEK-YGIKNYLSVPDNKLKEALRFL--GPISISVAVSDD 155
Query: 158 AFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVD----------YWIIKNSWGRSWGMNG 207
F Y GIF G C L+HAV++VG+ + V+ Y+IIKNSWG+ WG G
Sbjct: 156 -FAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERG 214
Query: 208 YMHMQRNTGNSLGICGINMLASYP 231
+++++ + + CG+ A P
Sbjct: 215 FINIETDESGLMRKCGLGTDAFIP 238
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 105/185 (56%), Gaps = 7/185 (3%)
Query: 39 GACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIK--NH 96
G+CWAFSA G +E + L +LSEQ L+ CD++ +SGC GGLM+ A++++++ N
Sbjct: 23 GSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-DSGCSGGLMNNAFEWIVQENNG 81
Query: 97 GIDTEKDYPYRGQAGQCNKQKLNRHIV--TIDGYKDVPENNEKQLLQAVVAQPVSVGICG 154
+ TE YPY G + H V TI G+ ++P++ + V PV+V +
Sbjct: 82 AVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDA 141
Query: 155 SERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRN 214
S ++ Y+ G+ T S +LDH VL+VGY+ V YWIIKNSW WG GY+ + +
Sbjct: 142 S--SWMTYTGGVMTSCVSEALDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKG 199
Query: 215 TGNSL 219
+ L
Sbjct: 200 SNQCL 204
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 104/185 (56%), Gaps = 7/185 (3%)
Query: 39 GACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIK--NH 96
G+CWAFSA G +E + L +LSEQ L+ CD++ +SGC GGLM+ A++++++ N
Sbjct: 23 GSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-DSGCSGGLMNNAFEWIVQENNG 81
Query: 97 GIDTEKDYPYRGQAGQCNKQKLNRHIV--TIDGYKDVPENNEKQLLQAVVAQPVSVGICG 154
+ TE YPY G + H V TI G+ ++P++ + V PV+V +
Sbjct: 82 AVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDA 141
Query: 155 SERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRN 214
S ++ Y+ G+ T S LDH VL+VGY+ V YWIIKNSW WG GY+ + +
Sbjct: 142 S--SWMTYTGGVMTSCVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKG 199
Query: 215 TGNSL 219
+ L
Sbjct: 200 SNQCL 204
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 94/164 (57%), Gaps = 10/164 (6%)
Query: 29 RNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSY-NSGCGGGLMDY 87
+N+ C G+ WAFSATGA+EG TG L+SLSEQ L+DC N GC GGLMDY
Sbjct: 17 KNQGQC----GSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDY 72
Query: 88 AYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-Q 146
A+Q+V N G+D+E+ YPY C K + G+ D+P+ EK L++AV
Sbjct: 73 AFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIPK-QEKALMKAVATVG 130
Query: 147 PVSVGICGSERAFQLYSSGIFTGP--CSTSLDHAVLIVGYDSEN 188
P+SV I +F Y GI+ P S +DH VL+VGY E+
Sbjct: 131 PISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFES 174
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 112/204 (54%), Gaps = 16/204 (7%)
Query: 39 GACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHGI 98
G+ WAFS+ G++E I L++LSEQEL+DC N GC GGL++ A++ +I+ GI
Sbjct: 39 GSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFK-NYGCNGGLINNAFEDMIELGGI 97
Query: 99 DTEKDYPYRGQAGQ-CNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQPVSVGICGSER 157
+ DYPY A CN + I Y VP+N K+ L+ + P+S+ + S+
Sbjct: 98 CPDGDYPYVSDAPNLCNIDRCTEK-YGIKNYLSVPDNKLKEALRFL--GPISISVAVSDD 154
Query: 158 AFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVD----------YWIIKNSWGRSWGMNG 207
F Y GIF G C L+HAV++VG+ + V+ Y+IIKNSWG+ WG G
Sbjct: 155 -FAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERG 213
Query: 208 YMHMQRNTGNSLGICGINMLASYP 231
+++++ + + CG+ A P
Sbjct: 214 FINIETDESGLMRKCGLGTDAFIP 237
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 104/185 (56%), Gaps = 7/185 (3%)
Query: 39 GACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIK--NH 96
G+CWAFSA G +E + L +L+EQ L+ CD++ +SGC GGLM+ A++++++ N
Sbjct: 23 GSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-DSGCSGGLMNNAFEWIVQENNG 81
Query: 97 GIDTEKDYPYRGQAGQCNKQKLNRHIV--TIDGYKDVPENNEKQLLQAVVAQPVSVGICG 154
+ TE YPY G + H V TI G+ ++P++ + V PV+V +
Sbjct: 82 AVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDA 141
Query: 155 SERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRN 214
S ++ Y+ G+ T S LDH VL+VGY+ V YWIIKNSW WG GY+ + +
Sbjct: 142 S--SWMTYTGGVMTSCVSEQLDHGVLLVGYNDGAAVPYWIIKNSWTTQWGEEGYIRIAKG 199
Query: 215 TGNSL 219
+ L
Sbjct: 200 SNQCL 204
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 104/185 (56%), Gaps = 7/185 (3%)
Query: 39 GACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIK--NH 96
G+CWAFSA G +E + L +L+EQ L+ CD++ +SGC GGLM+ A++++++ N
Sbjct: 23 GSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-DSGCSGGLMNNAFEWIVQENNG 81
Query: 97 GIDTEKDYPYRGQAGQCNKQKLNRHIV--TIDGYKDVPENNEKQLLQAVVAQPVSVGICG 154
+ TE YPY G + H V TI G+ ++P++ + V PV+V +
Sbjct: 82 AVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDA 141
Query: 155 SERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRN 214
S ++ Y+ G+ T S LDH VL+VGY+ V YWIIKNSW WG GY+ + +
Sbjct: 142 S--SWMTYTGGVMTSCVSEQLDHGVLLVGYNDGAAVPYWIIKNSWTTQWGEEGYIRIAKG 199
Query: 215 TGNSL 219
+ L
Sbjct: 200 SNQCL 204
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 109/206 (52%), Gaps = 16/206 (7%)
Query: 37 LLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNH 96
L G+CWAFS+ G++E I +L SEQEL+DC N+GC GG + A+ +I
Sbjct: 40 LCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVK-NNGCYGGYITNAFDDMIDLG 98
Query: 97 GIDTEKDYPYRGQAGQ-CNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQPVSVGICGS 155
G+ ++ DYPY + CN ++ N TI Y +P++ K+ L+ + P+S+ I S
Sbjct: 99 GLCSQDDYPYVSNLPETCNLKRCNER-YTIKSYVSIPDDKFKEALRYL--GPISISIAAS 155
Query: 156 ERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVD----------YWIIKNSWGRSWGM 205
+ F Y G + G C + +HAV++VGY ++ + Y+IIKNSWG WG
Sbjct: 156 DD-FAFYRGGFYDGECGAAPNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGE 214
Query: 206 NGYMHMQRNTGNSLGICGINMLASYP 231
GY++++ + C I A P
Sbjct: 215 GGYINLETDENGYKKTCSIGTEAYVP 240
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 106/195 (54%), Gaps = 12/195 (6%)
Query: 39 GACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHGI 98
G+CWAFS TG +EG + G+L+SLSEQEL+DCD+ + C GGL AY + G+
Sbjct: 23 GSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDK-MDKACMGGLPSNAYSAIKNLGGL 81
Query: 99 DTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQPVSVGICGSERA 158
+TE DY Y+G C + + V I ++ +N +K P+SV I +
Sbjct: 82 ETEDDYSYQGHMQSC-QFSAEKAKVYIQDSVELSQNEQKLAAWLAKRGPISVAI--NAFG 138
Query: 159 FQLYSSGI---FTGPCSTSL-DHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRN 214
Q Y GI CS L DHAVL+VGY + V +W IKNSWG WG GY ++ R
Sbjct: 139 MQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRG 198
Query: 215 TGNSLGICGINMLAS 229
+ G CG+N +AS
Sbjct: 199 S----GACGVNTMAS 209
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 96/198 (48%), Gaps = 17/198 (8%)
Query: 39 GACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHGI 98
G+CWAFS A E + + LSEQEL+DC + GC G + +++ +N G+
Sbjct: 33 GSCWAFSGVAATESAYLAYRNTSLDLSEQELVDCASQH--GCHGDTIPRGIEYIQQN-GV 89
Query: 99 DTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQPVSVGIC---GS 155
E+ YPY + +C ++ N I Y + + KQ+ +A+ ++ +
Sbjct: 90 VEERSYPYVAREQRC--RRPNSQHYGISNYCQIYPPDVKQIREALTQTHTAIAVIIGIKD 147
Query: 156 ERAFQLYSSGIFTGPCSTSLD--HAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQR 213
RAFQ Y + HAV IVGY S G DYWI++NSW +WG +GY + Q
Sbjct: 148 LRAFQHYDGRTIIQHDNGYQPNYHAVNIVGYGSTQGDDYWIVRNSWDTTWGDSGYGYFQ- 206
Query: 214 NTGNSLGICGINMLASYP 231
GN+L M+ YP
Sbjct: 207 -AGNNL-----MMIEQYP 218
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 107/216 (49%), Gaps = 27/216 (12%)
Query: 29 RNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVS--LSEQELIDCDRSYNSGCGGGLMD 86
RN++SC G+C++F++ G +E +I+T + + LS QE++ C + Y GC GG
Sbjct: 226 RNQASC----GSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQ-YAQGCEGGFPY 280
Query: 87 YAYQFVIKNHGIDTEKDYPYRGQAGQCN-KQKLNRHIVTIDGYKDVPE---NNEKQLLQA 142
++ G+ E +PY G C K+ R+ + Y N L+
Sbjct: 281 LIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLEL 340
Query: 143 VVAQPVSVGICGSERAFQLYSSGIF--TG------PCSTSLDHAVLIVGY--DSENGVDY 192
V P++V + F Y GI+ TG P + +HAVL+VGY DS +G+DY
Sbjct: 341 VHHGPMAVAFEVYDD-FLHYKKGIYHHTGLRDPFNPFELT-NHAVLLVGYGTDSASGMDY 398
Query: 193 WIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLA 228
WI+KNSWG WG NGY ++R T C I +A
Sbjct: 399 WIVKNSWGTGWGENGYFRIRRGTDE----CAIESIA 430
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 94/218 (43%), Gaps = 25/218 (11%)
Query: 21 QMILLIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGC 80
QM + R + C G+CWAFS A E + L+EQEL+DC + GC
Sbjct: 18 QMRTVTPIRMQGGC----GSCWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQH--GC 71
Query: 81 GGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLL 140
G + ++ I+++G+ E Y Y + C + R I Y + N ++
Sbjct: 72 HGDTIPRGIEY-IQHNGVVQESYYRYVAREQSCRRPNAQR--FGISNYCQIYPPNANKIR 128
Query: 141 QAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLD-------HAVLIVGYDSENGVDYW 193
+A+ ++ + + + + G D HAV IVGY + GVDYW
Sbjct: 129 EALAQTHSAIAVIIGIKDLDAFRH--YDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYW 186
Query: 194 IIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 231
I++NSW +WG NGY + N + M+ YP
Sbjct: 187 IVRNSWDTNWGDNGYGYFAAN-------IDLMMIEEYP 217
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 94/218 (43%), Gaps = 25/218 (11%)
Query: 21 QMILLIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGC 80
QM + R + C G+CWAFS A E + L+EQEL+DC + GC
Sbjct: 18 QMRTVTPIRMQGGC----GSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCASQH--GC 71
Query: 81 GGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLL 140
G + ++ I+++G+ E Y Y + C + R I Y + N ++
Sbjct: 72 HGDTIPRGIEY-IQHNGVVQESYYRYVAREQSCRRPNAQR--FGISNYCQIYPPNVNKIR 128
Query: 141 QAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLD-------HAVLIVGYDSENGVDYW 193
+A+ ++ + + + + G D HAV IVGY + GVDYW
Sbjct: 129 EALAQTHSAIAVIIGIKDLDAFRH--YDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYW 186
Query: 194 IIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 231
I++NSW +WG NGY + N + M+ YP
Sbjct: 187 IVRNSWDTNWGDNGYGYFAANI-------DLMMIEEYP 217
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 103/216 (47%), Gaps = 27/216 (12%)
Query: 29 RNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVS--LSEQELIDCDRSYNSGCGGGLMD 86
RN+ SC G+C++F++ G +E +I+T + + LS QE++ C Y GC GG
Sbjct: 225 RNQESC----GSCYSFASLGMLEARIRILTNNSQTPILSPQEVVSCS-PYAQGCDGGFPY 279
Query: 87 YAYQFVIKNHGIDTEKDYPYRGQAGQCN-KQKLNRHIVTIDGYKDVPE---NNEKQLLQA 142
++ G+ E +PY C K+ R+ + Y N L+
Sbjct: 280 LIAGKYAQDFGVVEENCFPYTATDAPCKPKENCLRYYSSEYYYVGGFYGGCNEALMKLEL 339
Query: 143 VVAQPVSVGICGSERAFQLYSSGIF--TG------PCSTSLDHAVLIVGY--DSENGVDY 192
V P++V + F Y SGI+ TG P + +HAVL+VGY D G+DY
Sbjct: 340 VKHGPMAVAFEVHD-DFLHYHSGIYHHTGLSDPFNPFELT-NHAVLLVGYGKDPVTGLDY 397
Query: 193 WIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLA 228
WI+KNSWG WG +GY ++R T C I +A
Sbjct: 398 WIVKNSWGSQWGESGYFRIRRGTDE----CAIESIA 429
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 96/222 (43%), Gaps = 33/222 (14%)
Query: 21 QMILLIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGC 80
QM + R + C G+ WAFS A E + L+EQEL+DC + GC
Sbjct: 98 QMRTVTPIRMQGGC----GSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCASQH--GC 151
Query: 81 GGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGY-KDVPENNEK-- 137
G + ++ I+++G+ E Y Y + C + R I Y + P N K
Sbjct: 152 HGDTIPRGIEY-IQHNGVVQESYYRYVAREQSCRRPNAQR--FGISNYCQIYPPNANKIR 208
Query: 138 -QLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLD-------HAVLIVGYDSENG 189
L Q A V +GI + AF+ Y G D HAV IVGY + G
Sbjct: 209 EALAQTHSAIAVIIGIKDLD-AFRHYD-----GRTIIQRDNGYQPNYHAVNIVGYSNAQG 262
Query: 190 VDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 231
VDYWI++NSW +WG NGY + N + M+ YP
Sbjct: 263 VDYWIVRNSWDTNWGDNGYGYFAAN-------IDLMMIEEYP 297
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 93/218 (42%), Gaps = 25/218 (11%)
Query: 21 QMILLIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGC 80
QM + R + C G+ WAFS A E + L+EQEL+DC + GC
Sbjct: 18 QMRTVTPIRMQGGC----GSXWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQH--GC 71
Query: 81 GGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLL 140
G + ++ I+++G+ E Y Y + C + R I Y + N ++
Sbjct: 72 HGDTIPRGIEY-IQHNGVVQESYYRYVAREQSCRRPNAQR--FGISNYCQIYPPNANKIR 128
Query: 141 QAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLD-------HAVLIVGYDSENGVDYW 193
+A+ ++ + + + + G D HAV IVGY + GVDYW
Sbjct: 129 EALAQTHSAIAVIIGIKDLDAFRH--YDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYW 186
Query: 194 IIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 231
I++NSW +WG NGY + N + M+ YP
Sbjct: 187 IVRNSWDTNWGDNGYGYFAAN-------IDLMMIEEYP 217
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 96/199 (48%), Gaps = 31/199 (15%)
Query: 39 GACWAFSATGAI-EGINKIVTGSLVS--LSEQELIDCDRSYNSGCGGG----LMDYAYQF 91
G+CWA ++T A+ + IN G+ S LS Q +IDC + C GG + DYA+Q
Sbjct: 64 GSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGNA--GSCEGGNDLSVWDYAHQ- 120
Query: 92 VIKNHGIDTEKDYPYRG---------QAGQCNKQK-----LNRHIVTIDGYKDVPENNEK 137
HGI E Y+ Q G CN+ K N + + Y + EK
Sbjct: 121 ----HGIPDETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSL-SGREK 175
Query: 138 QLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTS-LDHAVLIVGYDSENGVDYWIIK 196
+ + P+S GI +ER Y+ GI+ T+ ++H V + G+ +G +YWI++
Sbjct: 176 MMAEIYANGPISCGIMATER-LANYTGGIYAEYQDTTYINHVVSVAGWGISDGTEYWIVR 234
Query: 197 NSWGRSWGMNGYMHMQRNT 215
NSWG WG G++ + +T
Sbjct: 235 NSWGEPWGERGWLRIVTST 253
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 96/199 (48%), Gaps = 31/199 (15%)
Query: 39 GACWAFSATGAI-EGINKIVTGSLVS--LSEQELIDCDRSYNSGCGGG----LMDYAYQF 91
G+CWA ++T A+ + IN G+ S LS Q +IDC + C GG + DYA+Q
Sbjct: 29 GSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGNA--GSCEGGNDLSVWDYAHQ- 85
Query: 92 VIKNHGIDTEKDYPYRG---------QAGQCNKQK-----LNRHIVTIDGYKDVPENNEK 137
HGI E Y+ Q G CN+ K N + + Y + EK
Sbjct: 86 ----HGIPDETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSL-SGREK 140
Query: 138 QLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTS-LDHAVLIVGYDSENGVDYWIIK 196
+ + P+S GI +ER Y+ GI+ T+ ++H V + G+ +G +YWI++
Sbjct: 141 MMAEIYANGPISCGIMATER-LANYTGGIYAEYQDTTYINHVVSVAGWGISDGTEYWIVR 199
Query: 197 NSWGRSWGMNGYMHMQRNT 215
NSWG WG G++ + +T
Sbjct: 200 NSWGEPWGERGWLRIVTST 218
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 100/225 (44%), Gaps = 42/225 (18%)
Query: 25 LIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSL--VSLSEQELIDCDRSYNSGCGG 82
+ R++S C G+CWAF A A+ + I +G V LS +L+ C S GC G
Sbjct: 19 IATIRDQSRC----GSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLLSCCESCGLGCEG 74
Query: 83 GLMDYAYQFVIKNHGIDTE---------KDYPY-------RGQAGQCNK----------- 115
G++ A+ + +K GI T + YP+ +G+ C
Sbjct: 75 GILGPAWDYWVK-EGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGSKIYKTPRCKQT 133
Query: 116 -QKLNRHIVTIDGYKDVP----ENNEKQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTG 169
QK + T D ++ +N+EK + + ++ PV G E F Y SGI+
Sbjct: 134 CQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYE-DFLNYKSGIYKH 192
Query: 170 PCSTSL-DHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQR 213
+L HA+ I+G+ EN YW+I NSW WG NGY + R
Sbjct: 193 ITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIVR 237
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 110/267 (41%), Gaps = 57/267 (21%)
Query: 2 PPNYVL--EDLAL-LSFTGHK--LQMILLIQFRNKSSCLYLLGACWAFSATGAIEGINKI 56
PP V+ EDL L SF + Q + + R++ SC G+CWAF A AI I
Sbjct: 52 PPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSC----GSCWAFGAVEAISDRICI 107
Query: 57 VTGSLVSL--SEQELIDCDRSY-NSGCGGGLMDYAYQFVIKNHGIDTEKDY-------PY 106
T + VS+ S ++L+ C S GC GG A+ F + G+ + Y PY
Sbjct: 108 HTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRK-GLVSGGLYESHVGCRPY 166
Query: 107 ------------------RGQAGQCNK---------QKLNRHIVTIDGYKDVP-ENNEKQ 138
G +C+K K ++H GY N+EK
Sbjct: 167 SIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHY----GYNSYSVSNSEKD 222
Query: 139 LLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLD-HAVLIVGYDSENGVDYWIIKN 197
++ + G F LY SG++ + HA+ I+G+ ENG YW++ N
Sbjct: 223 IMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVAN 282
Query: 198 SWGRSWGMNGYMHMQRNTGNSLGICGI 224
SW WG NG+ + R + CGI
Sbjct: 283 SWNTDWGDNGFFKILRGQDH----CGI 305
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 63.5 bits (153), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/59 (50%), Positives = 38/59 (64%), Gaps = 6/59 (10%)
Query: 176 DHAVLIVGY--DSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPT 232
+HAVL+VGY DS +G+DYWI+KNSWG WG NGY ++R T C I +A T
Sbjct: 10 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDE----CAIESIAVAAT 64
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 99/244 (40%), Gaps = 52/244 (21%)
Query: 21 QMILLIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSL--SEQELIDCDRSY-N 77
Q + + R++ SC G+CWAF A AI I T + VS+ S ++L+ C S
Sbjct: 15 QCPTIKEIRDQGSC----GSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCG 70
Query: 78 SGCGGGLMDYAYQFVIKNHGIDTEKDY-------PY------------------RGQAGQ 112
GC GG A+ F + G+ + Y PY G +
Sbjct: 71 DGCNGGYPAEAWNFWTRK-GLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPK 129
Query: 113 CNK---------QKLNRHIVTIDGYKDVP-ENNEKQLLQAVVAQPVSVGICGSERAFQLY 162
C+K K ++H GY N+EK ++ + G F LY
Sbjct: 130 CSKICEPGYSPTYKQDKHY----GYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLY 185
Query: 163 SSGIFTGPCSTSLD-HAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGI 221
SG++ + HA+ I+G+ ENG YW++ NSW WG NG+ + R +
Sbjct: 186 KSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDH---- 241
Query: 222 CGIN 225
CGI
Sbjct: 242 CGIE 245
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 99/244 (40%), Gaps = 52/244 (21%)
Query: 21 QMILLIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSL--SEQELIDCDRSY-N 77
Q + + R++ SC G+CWAF A AI I T + VS+ S ++L+ C S
Sbjct: 13 QCPTIKEIRDQGSC----GSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCG 68
Query: 78 SGCGGGLMDYAYQFVIKNHGIDTEKDY-------PY------------------RGQAGQ 112
GC GG A+ F + G+ + Y PY G +
Sbjct: 69 DGCNGGYPAEAWNFWTRK-GLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPK 127
Query: 113 CNK---------QKLNRHIVTIDGYKDVP-ENNEKQLLQAVVAQPVSVGICGSERAFQLY 162
C+K K ++H GY N+EK ++ + G F LY
Sbjct: 128 CSKICEPGYSPTYKQDKHY----GYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLY 183
Query: 163 SSGIFTGPCSTSLD-HAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGI 221
SG++ + HA+ I+G+ ENG YW++ NSW WG NG+ + R +
Sbjct: 184 KSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDH---- 239
Query: 222 CGIN 225
CGI
Sbjct: 240 CGIE 243
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 99/244 (40%), Gaps = 52/244 (21%)
Query: 21 QMILLIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSL--SEQELIDCDRSY-N 77
Q + + R++ SC G+CWAF A AI I T + VS+ S ++L+ C S
Sbjct: 14 QCPTIKEIRDQGSC----GSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCG 69
Query: 78 SGCGGGLMDYAYQFVIKNHGIDTEKDY-------PY------------------RGQAGQ 112
GC GG A+ F + G+ + Y PY G +
Sbjct: 70 DGCNGGYPAEAWNFWTRK-GLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPK 128
Query: 113 CNK---------QKLNRHIVTIDGYKDVP-ENNEKQLLQAVVAQPVSVGICGSERAFQLY 162
C+K K ++H GY N+EK ++ + G F LY
Sbjct: 129 CSKICEPGYSPTYKQDKHY----GYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLY 184
Query: 163 SSGIFTGPCSTSLD-HAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGI 221
SG++ + HA+ I+G+ ENG YW++ NSW WG NG+ + R +
Sbjct: 185 KSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDH---- 240
Query: 222 CGIN 225
CGI
Sbjct: 241 CGIE 244
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 105/260 (40%), Gaps = 55/260 (21%)
Query: 8 EDLAL-LSFTGHK--LQMILLIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSL 64
EDL L SF + Q + + R++ SC G+ WAF A AI I T + VS+
Sbjct: 3 EDLKLPASFDAREQWPQCPTIKEIRDQGSC----GSAWAFGAVEAISDRICIHTNAHVSV 58
Query: 65 --SEQELIDCDRSY-NSGCGGGLMDYAYQFVIKNHGIDTEKDY-------PY-------- 106
S ++L+ C S GC GG A+ F + G+ + Y PY
Sbjct: 59 EVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRK-GLVSGGLYESHVGCRPYSIPPCEAH 117
Query: 107 ----------RGQAGQCNK---------QKLNRHIVTIDGYKDVP-ENNEKQLLQAVVAQ 146
G +C+K K ++H GY N+EK ++ +
Sbjct: 118 VNGARPPCTGEGDTPKCSKICEPGYSPTYKQDKHY----GYNSYSVSNSEKDIMAEIYKN 173
Query: 147 PVSVGICGSERAFQLYSSGIFTGPCSTSLD-HAVLIVGYDSENGVDYWIIKNSWGRSWGM 205
G F LY SG++ + HA+ I+G+ ENG YW++ NSW WG
Sbjct: 174 GPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGD 233
Query: 206 NGYMHMQRNTGNSLGICGIN 225
NG+ + R + CGI
Sbjct: 234 NGFFKILRGQDH----CGIE 249
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 95/239 (39%), Gaps = 52/239 (21%)
Query: 25 LIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSL---SEQELIDCDRSYNSGCG 81
+ Q R++ SC G+CWAF A A+ I T V++ +E L C GC
Sbjct: 17 IAQIRDQGSC----GSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCN 72
Query: 82 GGLMDYAYQFVIKNHGIDTEKDY-------PY------------------RGQAGQCNKQ 116
GG A+ F + G+ + Y PY G +CNK
Sbjct: 73 GGYPSGAWNFWTRK-GLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCTGEGDTPKCNKM 131
Query: 117 ---------KLNRHIVTIDGYKDVP-ENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGI 166
K ++H GY ++EK+++ + G F Y SG+
Sbjct: 132 CEAGYSTSYKEDKHY----GYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGV 187
Query: 167 FTGPCSTSLD-HAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGI 224
+ + HA+ I+G+ ENGV YW++ NSW WG NG+ + R + CGI
Sbjct: 188 YKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENH----CGI 242
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 94/226 (41%), Gaps = 36/226 (15%)
Query: 25 LIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTG-SLVSLSEQELIDCDRSYNSGCGGG 83
+ Q ++S+C G+CWA +A A+ + G V +S +L+ C GC GG
Sbjct: 110 IPQIADQSAC----GSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGDGCNGG 165
Query: 84 LMDYA----------------YQFVIKNHGIDTEKDYP----YRGQAGQCNKQKLNRHIV 123
D A Y F +H ++ YP + +CN + I
Sbjct: 166 DPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIP 225
Query: 124 TIDGYKD----VPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLD-HA 178
++ Y+ + + + + P V E F Y+SG++ L HA
Sbjct: 226 VVN-YRSWTSYALQGEDDYMRELFFRGPFEVAFDVYED-FIAYNSGVYHHVSGQYLGGHA 283
Query: 179 VLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGI 224
V +VG+ + NGV YW I NSW WGM+GY ++R + CGI
Sbjct: 284 VRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSE----CGI 325
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 95/239 (39%), Gaps = 52/239 (21%)
Query: 25 LIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSL---SEQELIDCDRSYNSGCG 81
+ Q R++ SC G+CWAF A A+ I T V++ +E L C GC
Sbjct: 23 IAQIRDQGSC----GSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCN 78
Query: 82 GGLMDYAYQFVIKNHGIDTEKDY-------PY------------------RGQAGQCNKQ 116
GG A+ F + G+ + Y PY G +CNK
Sbjct: 79 GGYPSGAWNFWTRK-GLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCTGEGDTPKCNKM 137
Query: 117 ---------KLNRHIVTIDGYKDVP-ENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGI 166
K ++H GY ++EK+++ + G F Y SG+
Sbjct: 138 CEAGYSTSYKEDKHY----GYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGV 193
Query: 167 FTGPCSTSLD-HAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGI 224
+ + HA+ I+G+ ENGV YW++ NSW WG NG+ + R + CGI
Sbjct: 194 YKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENH----CGI 248
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 92/225 (40%), Gaps = 34/225 (15%)
Query: 25 LIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTG-SLVSLSEQELIDCDRSYNSGCGGG 83
+ Q ++S+C G+CWA +A A+ + G V +S +L+ C GC GG
Sbjct: 87 IPQIADQSAC----GSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGDGCNGG 142
Query: 84 LMDYA----------------YQFVIKNHGIDTEKDYP----YRGQAGQCNK--QKLNRH 121
D A Y F +H ++ YP + +CN
Sbjct: 143 DPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIP 202
Query: 122 IVTIDGYKDVPENNEKQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGPCSTSLD-HAV 179
+V + E ++ + + P V E F Y+SG++ L HAV
Sbjct: 203 VVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYED-FIAYNSGVYHHVSGQYLGGHAV 261
Query: 180 LIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGI 224
+VG+ + NGV YW I NSW WGM+GY ++R + CGI
Sbjct: 262 RLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSE----CGI 302
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 92/225 (40%), Gaps = 34/225 (15%)
Query: 25 LIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTG-SLVSLSEQELIDCDRSYNSGCGGG 83
+ Q ++S+C G+CWA +A A+ + G V +S +L+ C GC GG
Sbjct: 88 IPQIADQSAC----GSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGDGCNGG 143
Query: 84 LMDYAYQFVIKNHGI-DTEKDYPY-------RGQAGQCNKQKLNRHIVTIDGYKDVP--- 132
D A+ + + D + YP+ + + G + N D D P
Sbjct: 144 DPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTIP 203
Query: 133 ------------ENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLD-HAV 179
+ + + + P V E F Y+SG++ L HAV
Sbjct: 204 VVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYED-FIAYNSGVYHHVSGQYLGGHAV 262
Query: 180 LIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGI 224
+VG+ + NGV YW I NSW WGM+GY ++R + CGI
Sbjct: 263 RLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSE----CGI 303
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 94/239 (39%), Gaps = 52/239 (21%)
Query: 25 LIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSL---SEQELIDCDRSYNSGCG 81
+ Q R++ SC G+ WAF A A+ I T V++ +E L C GC
Sbjct: 79 IAQIRDQGSC----GSSWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCN 134
Query: 82 GGLMDYAYQFVIKNHGIDTEKDY-------PY------------------RGQAGQCNKQ 116
GG A+ F + G+ + Y PY G +CNK
Sbjct: 135 GGYPSGAWNFWTRK-GLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCTGEGDTPKCNKM 193
Query: 117 ---------KLNRHIVTIDGYKDVP-ENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGI 166
K ++H GY ++EK+++ + G F Y SG+
Sbjct: 194 CEAGYSTSYKEDKHY----GYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGV 249
Query: 167 FTGPCSTSLD-HAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGI 224
+ + HA+ I+G+ ENGV YW++ NSW WG NG+ + R + CGI
Sbjct: 250 YKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENH----CGI 304
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 134 NNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLD-HAVLIVGYDSENGVDY 192
NNEK+++ + G F LY SG++ + HA+ I+G+ ENG Y
Sbjct: 155 NNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPY 214
Query: 193 WIIKNSWGRSWGMNGYMHMQR 213
W++ NSW WG NG+ + R
Sbjct: 215 WLVANSWNTDWGDNGFFKILR 235
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 134 NNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLD-HAVLIVGYDSENGVDY 192
NNEK+++ + G F LY SG++ + HA+ I+G+ ENG Y
Sbjct: 107 NNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPY 166
Query: 193 WIIKNSWGRSWGMNGYMHMQR 213
W++ NSW WG NG+ + R
Sbjct: 167 WLVGNSWNTDWGDNGFFKILR 187
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 134 NNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLD-HAVLIVGYDSENGVDY 192
NNEK+++ + G F LY SG++ + HA+ I+G+ ENG Y
Sbjct: 155 NNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPY 214
Query: 193 WIIKNSWGRSWGMNGYMHMQR 213
W++ NSW WG NG+ + R
Sbjct: 215 WLVGNSWNTDWGDNGFFKILR 235
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 134 NNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLD-HAVLIVGYDSENGVDY 192
N+EK ++ + G F LY SG++ + HA+ I+G+ ENG Y
Sbjct: 106 NSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPY 165
Query: 193 WIIKNSWGRSWGMNGYMHMQR 213
W++ NSW WG NG+ + R
Sbjct: 166 WLVANSWNTDWGDNGFFKILR 186
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 51.6 bits (122), Expect = 7e-07, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Query: 192 YWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPT 232
YW++KNSWG WGM GY+ M ++ N CGI ASYPT
Sbjct: 4 YWLVKNSWGEEWGMGGYVKMAKDRRNH---CGIASAASYPT 41
>pdb|2JYE|A Chain A, Human Granulin A
Length = 72
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 248 RCSLLTYCAAGETCCCGSSILGICLSWKCCGFSSAVCCSDHRYCCPSNYPICDSVRHQCL 307
+C + C G TCC S +W CC F+ AVCC DH +CCP+ + CD+ + C
Sbjct: 5 KCDMEVSCPDGYTCCRLQS-----GAWGCCPFTQAVCCEDHIHCCPAGF-TCDTQKGTCE 58
Query: 308 TRLTGNV 314
+L +
Sbjct: 59 QKLAAAL 65
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 174 SLDHAVLIVGY----DSE-NGVDYWIIKNSWGRSWGMNGYMHMQ 212
+ DHAV IVGY +SE YWI++NSWG WG GY +
Sbjct: 197 TADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVD 240
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 174 SLDHAVLIVGY----DSE-NGVDYWIIKNSWGRSWGMNGYMHMQ 212
+ DHAV IVGY +SE YWI++NSWG WG GY +
Sbjct: 196 TADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVD 239
>pdb|2JYT|A Chain A, Human Granulin C, Isomer 1
pdb|2JYU|A Chain A, Human Granulin C, Isomer 2
Length = 69
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 249 CSLLTYCAAGETCCCGSSILGICLSWKCCGFSSAVCCSDHRYCCPSNY 296
C ++ C + +TCC +S W CC AVCCSDH++CCP Y
Sbjct: 5 CDNVSSCPSSDTCCQLTS-----GEWGCCPIPEAVCCSDHQHCCPQGY 47
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 177 HAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHM 211
HAVL VGYD E + ++ I+NSWG + G +GY M
Sbjct: 237 HAVLCVGYDDE--IRHFRIRNSWGNNVGEDGYFWM 269
>pdb|2JYV|A Chain A, Human Granulin F
Length = 72
Score = 34.7 bits (78), Expect = 0.075, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 255 CAAGETCCCGSSILGICLSWKCCGFSSAVCCSDHRYCCPSNYPICDSVRHQCL 307
C TCC + + SW CC A CC D +CCP CD V +C+
Sbjct: 13 CPDFSTCC-----VMVDGSWGCCPMPQASCCEDRVHCCPHG-AFCDLVHTRCI 59
>pdb|2DPH|A Chain A, Crystal Structure Of Formaldehyde Dismutase
pdb|2DPH|B Chain B, Crystal Structure Of Formaldehyde Dismutase
Length = 398
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 133 ENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDY 192
E+N ++L AV+ + VS ICGS+ Q G F P L H I G E G D
Sbjct: 25 EHNNRKLEHAVILKVVSTNICGSD---QHIYRGRFIVPKGHVLGHE--ITGEVVEKGSDV 79
Query: 193 WII 195
++
Sbjct: 80 ELM 82
>pdb|1TDH|A Chain A, Crystal Structure Of Human Endonuclease Viii-Like 1
(Neil1)
Length = 364
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 183 GYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICG 223
GY SE+G + + +W R +GM G +Q G ++ G
Sbjct: 243 GYGSESGEEDFAAFRAWLRCYGMPGMSSLQDRHGRTIWFQG 283
>pdb|3PW3|A Chain A, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|B Chain B, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|C Chain C, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|D Chain D, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|E Chain E, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|F Chain F, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
Length = 383
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 172 STSLDHAVLIVGY-DSENGVDYWIIKNSWGRSWGMNG 207
T+ DH I G + G +Y+ +KNSWG + NG
Sbjct: 313 ETTDDHGXQIYGIAKDQEGNEYYXVKNSWGTNSKYNG 349
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,886,875
Number of Sequences: 62578
Number of extensions: 403491
Number of successful extensions: 1070
Number of sequences better than 100.0: 124
Number of HSP's better than 100.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 672
Number of HSP's gapped (non-prelim): 143
length of query: 341
length of database: 14,973,337
effective HSP length: 100
effective length of query: 241
effective length of database: 8,715,537
effective search space: 2100444417
effective search space used: 2100444417
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)