Query 019447
Match_columns 341
No_of_seqs 281 out of 1565
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 09:32:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019447.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019447hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 3.8E-62 8.2E-67 457.2 18.5 214 7-233 151-371 (372)
2 PTZ00203 cathepsin L protease; 100.0 9.3E-57 2E-61 435.5 23.8 211 10-232 123-339 (348)
3 KOG1543 Cysteine proteinase Ca 100.0 4.7E-56 1E-60 427.4 22.2 215 8-233 104-324 (325)
4 PTZ00021 falcipain-2; Provisio 100.0 3.6E-56 7.7E-61 444.4 20.6 211 13-233 266-488 (489)
5 cd02621 Peptidase_C1A_Cathepsi 100.0 2.8E-55 6E-60 407.0 21.7 209 13-232 1-241 (243)
6 PTZ00200 cysteine proteinase; 100.0 2.1E-55 4.6E-60 437.0 21.6 210 13-234 234-446 (448)
7 cd02698 Peptidase_C1A_Cathepsi 100.0 1.2E-54 2.6E-59 402.0 22.5 211 13-233 1-238 (239)
8 cd02248 Peptidase_C1A Peptidas 100.0 2.4E-54 5.3E-59 390.2 23.0 207 14-231 1-210 (210)
9 cd02620 Peptidase_C1A_Cathepsi 100.0 9.8E-54 2.1E-58 395.2 21.8 205 14-229 1-234 (236)
10 PF00112 Peptidase_C1: Papain 100.0 1.5E-53 3.2E-58 385.4 18.4 213 13-232 1-219 (219)
11 PTZ00364 dipeptidyl-peptidase 100.0 1.3E-50 2.8E-55 408.9 23.9 212 9-233 201-459 (548)
12 PTZ00049 cathepsin C-like prot 100.0 5.6E-50 1.2E-54 408.6 22.0 215 9-234 377-677 (693)
13 smart00645 Pept_C1 Papain fami 100.0 3.5E-47 7.5E-52 336.1 18.7 166 13-227 1-169 (174)
14 cd02619 Peptidase_C1 C1 Peptid 100.0 2.3E-45 5E-50 332.4 20.8 194 16-216 1-214 (223)
15 PTZ00462 Serine-repeat antigen 100.0 6E-42 1.3E-46 358.6 21.6 202 25-235 544-783 (1004)
16 KOG1544 Predicted cysteine pro 100.0 2.9E-37 6.3E-42 286.5 7.3 210 10-229 206-456 (470)
17 KOG4296 Epithelin/granulin [Si 100.0 1.4E-30 3E-35 196.3 5.8 85 249-334 1-85 (90)
18 COG4870 Cysteine protease [Pos 100.0 1.7E-29 3.7E-34 239.6 6.5 198 9-216 95-315 (372)
19 smart00277 GRAN Granulin. 99.9 5.1E-24 1.1E-28 148.3 3.7 51 250-306 1-51 (51)
20 cd00585 Peptidase_C1B Peptidas 99.9 5.8E-22 1.3E-26 196.7 14.3 179 26-214 55-399 (437)
21 PF00396 Granulin: Granulin; 99.8 1.8E-19 4E-24 121.8 2.3 43 260-308 1-43 (43)
22 PF03051 Peptidase_C1_2: Pepti 99.6 3E-14 6.5E-19 141.9 17.7 179 26-214 56-400 (438)
23 COG3579 PepC Aminopeptidase C 98.4 1.6E-06 3.5E-11 82.5 10.0 76 136-213 297-401 (444)
24 PF13529 Peptidase_C39_2: Pept 97.5 0.00091 2E-08 55.3 10.4 117 39-199 14-144 (144)
25 KOG4128 Bleomycin hydrolases a 96.3 0.005 1.1E-07 59.1 4.6 76 26-106 63-168 (457)
26 PF05543 Peptidase_C47: Stapho 96.2 0.036 7.8E-07 48.8 9.0 119 29-200 17-145 (175)
27 PF14399 Transpep_BrtH: NlpC/p 91.2 0.54 1.2E-05 44.8 6.5 66 136-214 78-144 (317)
28 COG4990 Uncharacterized protei 90.6 0.47 1E-05 42.1 4.9 52 129-200 116-168 (195)
29 PF09778 Guanylate_cyc_2: Guan 77.6 7.3 0.00016 35.6 6.4 58 135-197 112-180 (212)
30 cd02549 Peptidase_C39A A sub-f 77.6 6 0.00013 32.5 5.6 44 139-199 70-114 (141)
31 cd00044 CysPc Calpains, domain 70.7 18 0.00039 34.8 7.7 27 175-201 235-263 (315)
32 PF12385 Peptidase_C70: Papain 65.5 70 0.0015 28.0 9.3 37 136-187 98-135 (166)
33 PF14625 Lustrin_cystein: Lust 53.3 15 0.00032 24.5 2.6 18 245-262 15-32 (45)
34 PF01640 Peptidase_C10: Peptid 38.1 1.3E+02 0.0027 26.8 7.0 51 137-210 141-192 (192)
35 smart00230 CysPc Calpain-like 29.6 88 0.0019 30.2 4.8 26 175-200 227-254 (318)
36 PF15588 Imm7: Immunity protei 26.8 2E+02 0.0044 23.4 5.8 47 178-225 17-70 (115)
37 PF07829 Toxin_14: Alpha-A con 26.1 30 0.00065 20.3 0.5 10 275-284 1-11 (26)
38 cd00206 snake_toxin Snake toxi 25.9 70 0.0015 23.2 2.6 47 249-300 11-64 (64)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-62 Score=457.16 Aligned_cols=214 Identities=44% Similarity=0.824 Sum_probs=194.9
Q ss_pred CccccCCCCCCCCccCCCCCCccCCCCcCCCCCchHHHHHHHHHHHHHHHHcCCCcccCHHHHHhhCCCCCCCCCCCcHH
Q 019447 7 LEDLALLSFTGHKLQMILLIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMD 86 (341)
Q Consensus 7 ~~~~~~lP~~~D~R~~g~vtpVkdQg~c~~~~GsCWAfA~~~alE~~~~i~~~~~~~LSeq~l~dc~~~~~~gC~GG~~~ 86 (341)
.+....||.++|||++|.||||||||.| |||||||+|+++|+++.|++|++++||||||+||+. .+.||+||++.
T Consensus 151 ~~~~~~lP~~fDWR~kgaVTpVKnQG~C----GSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~-~d~gC~GGl~~ 225 (372)
T KOG1542|consen 151 IEPGESLPESFDWRDKGAVTPVKNQGMC----GSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDS-CDNGCNGGLMD 225 (372)
T ss_pred CCCCCCCCcccchhccCCccccccCCcC----cchhhhhhhhhhhhHHHhhcCcccccchhhhhcccC-cCCcCCCCChh
Confidence 4566899999999999999999999999 999999999999999999999999999999999996 68999999999
Q ss_pred HHHHHHHHhCCcccCCcccCCCCCC-cccccccCCceeeeceeEecCCChHHHHHHHHH-hCCcEEEEecccccccccCC
Q 019447 87 YAYQFVIKNHGIDTEKDYPYRGQAG-QCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVV-AQPVSVGICGSERAFQLYSS 164 (341)
Q Consensus 87 ~a~~~l~~~~Gi~~E~~yPY~~~~~-~C~~~~~~~~~~~i~~y~~i~~~~~~~ik~al~-~GPV~v~i~~~~~~f~~y~~ 164 (341)
+||+|+++.+|+..|++|||++..+ .|..++ ....+.|.+|..++. ||++|.+.|. +|||+|+|++ ..+|+|++
T Consensus 226 nA~~~~~~~gGL~~E~dYPY~g~~~~~C~~~~-~~~~v~I~~f~~l~~-nE~~ia~wLv~~GPi~vgiNa--~~mQ~Yrg 301 (372)
T KOG1542|consen 226 NAFKYIKKAGGLEKEKDYPYTGKKGNQCHFDK-SKIVVSIKDFSMLSN-NEDQIAAWLVTFGPLSVGINA--KPMQFYRG 301 (372)
T ss_pred HHHHHHHHhCCccccccCCccccCCCccccch-hhceEEEeccEecCC-CHHHHHHHHHhcCCeEEEEch--HHHHHhcc
Confidence 9999988888999999999999887 898765 567789999999987 5777777666 5999999997 57999999
Q ss_pred ceEeC---CCCCC-CCceEEEEEeeecC-CeeEEEEEcCCCCCCCCCcEEEEEccCCCCCCceeeeeccccccc
Q 019447 165 GIFTG---PCSTS-LDHAVLIVGYDSEN-GVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTK 233 (341)
Q Consensus 165 GIy~~---~~~~~-~~HaV~IVGyg~~~-g~~yWiVkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~~p~~ 233 (341)
||+.+ .|... ++|+|+|||||..+ .++|||||||||++|||+||+|+.|+.+ .|||+.+++-++.
T Consensus 302 GV~~P~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~N----~CGi~~mvss~~v 371 (372)
T KOG1542|consen 302 GVSCPSKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRGSN----ACGIADMVSSAAV 371 (372)
T ss_pred cccCCCcccCCccccCceEEEEeecCCCCCCceEEEECCccccccccceEEEecccc----ccccccchhhhhc
Confidence 99977 56655 79999999999998 8999999999999999999999999965 9999999886643
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=9.3e-57 Score=435.48 Aligned_cols=211 Identities=35% Similarity=0.677 Sum_probs=183.6
Q ss_pred ccCCCCCCCCccCCCCCCccCCCCcCCCCCchHHHHHHHHHHHHHHHHcCCCcccCHHHHHhhCCCCCCCCCCCcHHHHH
Q 019447 10 LALLSFTGHKLQMILLIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAY 89 (341)
Q Consensus 10 ~~~lP~~~D~R~~g~vtpVkdQg~c~~~~GsCWAfA~~~alE~~~~i~~~~~~~LSeq~l~dc~~~~~~gC~GG~~~~a~ 89 (341)
+.+||.++|||++|+|+||||||.| |||||||++++||+++++++++++.||||+|+||+. .+.||+||++..||
T Consensus 123 ~~~lP~~~DWR~~g~VtpVkdQg~C----GSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~-~~~GC~GG~~~~a~ 197 (348)
T PTZ00203 123 LSAVPDAVDWREKGAVTPVKNQGAC----GSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDH-VDNGCGGGLMLQAF 197 (348)
T ss_pred cccCCCCCcCCcCCCCCCccccCCC----ccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccC-CCCCCCCCCHHHHH
Confidence 3478999999999999999999999 999999999999999999999999999999999986 57899999999999
Q ss_pred HHHHHh--CCcccCCcccCCCCCC---cccccccCCceeeeceeEecCCChHHHHHHHHHh-CCcEEEEecccccccccC
Q 019447 90 QFVIKN--HGIDTEKDYPYRGQAG---QCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-QPVSVGICGSERAFQLYS 163 (341)
Q Consensus 90 ~~l~~~--~Gi~~E~~yPY~~~~~---~C~~~~~~~~~~~i~~y~~i~~~~~~~ik~al~~-GPV~v~i~~~~~~f~~y~ 163 (341)
+|++++ +|+++|++|||.+.++ .|.........+.+.+|..++. ++++|+++|++ |||+|+|++ .+|++|+
T Consensus 198 ~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~~i~~~~~i~~-~e~~~~~~l~~~GPv~v~i~a--~~f~~Y~ 274 (348)
T PTZ00203 198 EWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSMES-SERVMAAWLAKNGPISIAVDA--SSFMSYH 274 (348)
T ss_pred HHHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccceEecceeecCc-CHHHHHHHHHhCCCEEEEEEh--hhhcCcc
Confidence 999764 5789999999998765 5864332233467888988876 57889988875 999999998 3799999
Q ss_pred CceEeCCCCCCCCceEEEEEeeecCCeeEEEEEcCCCCCCCCCcEEEEEccCCCCCCceeeeecccccc
Q 019447 164 SGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPT 232 (341)
Q Consensus 164 ~GIy~~~~~~~~~HaV~IVGyg~~~g~~yWiVkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~~p~ 232 (341)
+|||+......++|||+|||||+++|++|||||||||++|||+|||||+|+. |.|||+..+....
T Consensus 275 ~GIy~~c~~~~~nHaVliVGYG~~~g~~YWiikNSWG~~WGe~GY~ri~rg~----n~Cgi~~~~~~~~ 339 (348)
T PTZ00203 275 SGVLTSCIGEQLNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGV----NACLLTGYPVSVH 339 (348)
T ss_pred CceeeccCCCCCCeEEEEEEEecCCCceEEEEEcCCCCCcCcCceEEEEcCC----CcccccceEEEEe
Confidence 9999852234579999999999988999999999999999999999999985 4999997776653
No 3
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-56 Score=427.42 Aligned_cols=215 Identities=44% Similarity=0.800 Sum_probs=192.5
Q ss_pred ccccCCCCCCCCccCC-CCCCccCCCCcCCCCCchHHHHHHHHHHHHHHHHcC-CCcccCHHHHHhhCCCCCCCCCCCcH
Q 019447 8 EDLALLSFTGHKLQMI-LLIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTG-SLVSLSEQELIDCDRSYNSGCGGGLM 85 (341)
Q Consensus 8 ~~~~~lP~~~D~R~~g-~vtpVkdQg~c~~~~GsCWAfA~~~alE~~~~i~~~-~~~~LSeq~l~dc~~~~~~gC~GG~~ 85 (341)
...++||.++|||+++ .++||||||.| |||||||++++||++++|+++ .++.||||+|+||....+.||+||.+
T Consensus 104 ~~~~~~p~s~DwR~~~~~~~~vkdQg~C----gsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~~~~GC~GG~~ 179 (325)
T KOG1543|consen 104 LDGDDLPDSFDWRDKGAVTPPVKDQGSC----GSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGECGDGCNGGEP 179 (325)
T ss_pred cchhhCCCCccccccCCcCCCcCCCCcC----cchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCCCCCCcCCCCH
Confidence 3467999999999997 55559999999 999999999999999999999 89999999999999866889999999
Q ss_pred HHHHHHHHHhCCcccCCcccCCCCCCcccccccCCceeeeceeEecCCChHHHHHHHHHh-CCcEEEEecccccccccCC
Q 019447 86 DYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-QPVSVGICGSERAFQLYSS 164 (341)
Q Consensus 86 ~~a~~~l~~~~Gi~~E~~yPY~~~~~~C~~~~~~~~~~~i~~y~~i~~~~~~~ik~al~~-GPV~v~i~~~~~~f~~y~~ 164 (341)
..||+|+.+++++.+|++|||....+.|..+.. ...+.+.++..++.+ +.+|+++|++ |||+|+|.+.. +|+.|++
T Consensus 180 ~~A~~yi~~~G~~t~~~~Ypy~~~~~~C~~~~~-~~~~~~~~~~~~~~~-e~~i~~~v~~~GPv~v~~~a~~-~F~~Y~~ 256 (325)
T KOG1543|consen 180 KNAFKYIKKNGGVTECENYPYIGKDGTCKSNKK-DKTVTIKGFYNVPAN-EEAIAEAVAKNGPVSVAIDAYE-DFSLYKG 256 (325)
T ss_pred HHHHHHHHHhCCCCCCcCCCCcCCCCCccCCCc-cceeEeeeeeecCcC-HHHHHHHHHhcCCeEEEEeehh-hhhhccC
Confidence 999999998844444999999999999988765 666788888888887 8899998886 79999999985 9999999
Q ss_pred ceEeCCCCC--CCCceEEEEEeeecCCeeEEEEEcCCCCCCCCCcEEEEEccCCCCCCceeeeecccc-ccc
Q 019447 165 GIFTGPCST--SLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASY-PTK 233 (341)
Q Consensus 165 GIy~~~~~~--~~~HaV~IVGyg~~~g~~yWiVkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~~-p~~ 233 (341)
|||.+.+.+ .++|||+|||||+.++.+|||||||||+.|||+|||||.|+.+ .|+|++.++| |++
T Consensus 257 GVy~~~~~~~~~~~Hav~iVGyG~~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~----~~~I~~~~~~~p~~ 324 (325)
T KOG1543|consen 257 GVYAEEKGDDKEGDHAVLIVGYGTGDGVDYWIVKNSWGTDWGEKGYFRIARGVN----KCGIASEASYGPIK 324 (325)
T ss_pred ceEeCCCCCCCCCCceEEEEEEcCCCCceeEEEEcCCCCCcccCceEEEecCCC----chhhhcccccCCCC
Confidence 999887655 5899999999999667899999999999999999999999976 8899999998 653
No 4
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=3.6e-56 Score=444.45 Aligned_cols=211 Identities=36% Similarity=0.687 Sum_probs=189.2
Q ss_pred CCCCCCCccCCCCCCccCCCCcCCCCCchHHHHHHHHHHHHHHHHcCCCcccCHHHHHhhCCCCCCCCCCCcHHHHHHHH
Q 019447 13 LSFTGHKLQMILLIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFV 92 (341)
Q Consensus 13 lP~~~D~R~~g~vtpVkdQg~c~~~~GsCWAfA~~~alE~~~~i~~~~~~~LSeq~l~dc~~~~~~gC~GG~~~~a~~~l 92 (341)
+|.++|||++|.|+||||||.| |||||||++++||++++|+++++++||||+|+||+. .+.||+||++..||+|+
T Consensus 266 ~P~s~DWR~~g~VtpVKdQG~C----GSCWAFAa~~alEs~~~I~~g~~v~LSeQqLVDCs~-~n~GC~GG~~~~Af~yi 340 (489)
T PTZ00021 266 DHAKYDWRLHNGVTPVKDQKNC----GSCWAFSTVGVVESQYAIRKNELVSLSEQELVDCSF-KNNGCYGGLIPNAFEDM 340 (489)
T ss_pred CccccccccCCCCCCccccccc----ccHHHHHHHHHHHHHHHHHcCCCcccCHHHHhhhcc-CCCCCCCcchHhhhhhh
Confidence 4889999999999999999999 999999999999999999999999999999999996 58899999999999999
Q ss_pred HHhCCcccCCcccCCCC-CCcccccccCCceeeeceeEecCCChHHHHHHHHHh-CCcEEEEecccccccccCCceEeCC
Q 019447 93 IKNHGIDTEKDYPYRGQ-AGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-QPVSVGICGSERAFQLYSSGIFTGP 170 (341)
Q Consensus 93 ~~~~Gi~~E~~yPY~~~-~~~C~~~~~~~~~~~i~~y~~i~~~~~~~ik~al~~-GPV~v~i~~~~~~f~~y~~GIy~~~ 170 (341)
++++||++|++|||.+. .+.|.... ....++|.+|..++ +++|+++|+. |||+|+|++. ++|++|++|||++.
T Consensus 341 ~~~gGl~tE~~YPY~~~~~~~C~~~~-~~~~~~i~~y~~i~---~~~lk~al~~~GPVsv~i~a~-~~f~~YkgGIy~~~ 415 (489)
T PTZ00021 341 IELGGLCSEDDYPYVSDTPELCNIDR-CKEKYKIKSYVSIP---EDKFKEAIRFLGPISVSIAVS-DDFAFYKGGIFDGE 415 (489)
T ss_pred hhccccCcccccCccCCCCCcccccc-ccccceeeeEEEec---HHHHHHHHHhcCCeEEEEEee-cccccCCCCcCCCC
Confidence 88889999999999987 47886543 33457888998886 4678999986 9999999997 68999999999888
Q ss_pred CCCCCCceEEEEEeeecC----------CeeEEEEEcCCCCCCCCCcEEEEEccCCCCCCceeeeeccccccc
Q 019447 171 CSTSLDHAVLIVGYDSEN----------GVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTK 233 (341)
Q Consensus 171 ~~~~~~HaV~IVGyg~~~----------g~~yWiVkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~~p~~ 233 (341)
|+..++|||+|||||+++ +.+|||||||||++|||+|||||+|+.+...|.|||++.++||+.
T Consensus 416 C~~~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~g~~n~CGI~t~a~yP~~ 488 (489)
T PTZ00021 416 CGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETDENGLMKTCSLGTEAYVPLI 488 (489)
T ss_pred CCCccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEcCCCCCCCCCCCcccceeEec
Confidence 887889999999999763 247999999999999999999999987655679999999999974
No 5
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=2.8e-55 Score=406.97 Aligned_cols=209 Identities=30% Similarity=0.586 Sum_probs=178.2
Q ss_pred CCCCCCCccCC----CCCCccCCCCcCCCCCchHHHHHHHHHHHHHHHHcCC------CcccCHHHHHhhCCCCCCCCCC
Q 019447 13 LSFTGHKLQMI----LLIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGS------LVSLSEQELIDCDRSYNSGCGG 82 (341)
Q Consensus 13 lP~~~D~R~~g----~vtpVkdQg~c~~~~GsCWAfA~~~alE~~~~i~~~~------~~~LSeq~l~dc~~~~~~gC~G 82 (341)
||.++|||+.+ +|+||||||.| |+|||||++++||++++++++. .+.||+|+|++|+. .+.||+|
T Consensus 1 lP~~fDwr~~~~~~~~v~~v~dQg~C----GsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~-~~~GC~G 75 (243)
T cd02621 1 LPKSFDWGDVNNGFNYVSPVRNQGGC----GSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQ-YSQGCDG 75 (243)
T ss_pred CCCcccccccCCCCcccccCCCCCcC----ccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcC-CCCCCCC
Confidence 79999999998 99999999999 9999999999999999998876 68999999999986 5789999
Q ss_pred CcHHHHHHHHHHhCCcccCCcccCCC-CCCcccccccCCceeeeceeEecC----CChHHHHHHHHHh-CCcEEEEeccc
Q 019447 83 GLMDYAYQFVIKNHGIDTEKDYPYRG-QAGQCNKQKLNRHIVTIDGYKDVP----ENNEKQLLQAVVA-QPVSVGICGSE 156 (341)
Q Consensus 83 G~~~~a~~~l~~~~Gi~~E~~yPY~~-~~~~C~~~~~~~~~~~i~~y~~i~----~~~~~~ik~al~~-GPV~v~i~~~~ 156 (341)
|++..|++|+.++ |+++|++|||.. ..+.|.........+.+..|..+. ..++++||++|++ |||+++|++.
T Consensus 76 G~~~~a~~~~~~~-Gi~~e~~yPY~~~~~~~C~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~- 153 (243)
T cd02621 76 GFPFLVGKFAEDF-GIVTEDYFPYTADDDRPCKASPSECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVY- 153 (243)
T ss_pred CCHHHHHHHHHhc-CcCCCceeCCCCCCCCCCCCCccccccccccceeEcccccccCCHHHHHHHHHHcCCEEEEEEec-
Confidence 9999999999665 999999999998 677887543222333444444432 3467889998875 8999999997
Q ss_pred ccccccCCceEeCC-----CCC---------CCCceEEEEEeeecC--CeeEEEEEcCCCCCCCCCcEEEEEccCCCCCC
Q 019447 157 RAFQLYSSGIFTGP-----CST---------SLDHAVLIVGYDSEN--GVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLG 220 (341)
Q Consensus 157 ~~f~~y~~GIy~~~-----~~~---------~~~HaV~IVGyg~~~--g~~yWiVkNSWG~~WGe~GY~~i~r~~~~~~~ 220 (341)
++|++|++|||+.. |.. .++|||+|||||+++ +.+|||||||||++|||+|||||+|+.+
T Consensus 154 ~~F~~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~~---- 229 (243)
T cd02621 154 SDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTN---- 229 (243)
T ss_pred ccccccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCCc----
Confidence 78999999999764 422 468999999999986 8999999999999999999999999754
Q ss_pred ceeeeecccccc
Q 019447 221 ICGINMLASYPT 232 (341)
Q Consensus 221 ~CgI~~~~~~p~ 232 (341)
.|||++.+.+++
T Consensus 230 ~cgi~~~~~~~~ 241 (243)
T cd02621 230 ECGIESQAVFAY 241 (243)
T ss_pred ccCcccceEeec
Confidence 999999987654
No 6
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=2.1e-55 Score=436.99 Aligned_cols=210 Identities=37% Similarity=0.696 Sum_probs=187.7
Q ss_pred CCCCCCCccCCCCCCccCCC-CcCCCCCchHHHHHHHHHHHHHHHHcCCCcccCHHHHHhhCCCCCCCCCCCcHHHHHHH
Q 019447 13 LSFTGHKLQMILLIQFRNKS-SCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQF 91 (341)
Q Consensus 13 lP~~~D~R~~g~vtpVkdQg-~c~~~~GsCWAfA~~~alE~~~~i~~~~~~~LSeq~l~dc~~~~~~gC~GG~~~~a~~~ 91 (341)
+|..+|||++|.|+|||||| .| |||||||++++||++++++++..+.||||+|+||+. .+.||+||++..||+|
T Consensus 234 ~P~~~DWR~~g~vtpVkdQG~~C----GSCWAFat~~aiEs~~~i~~~~~~~LSeQqLvDC~~-~~~GC~GG~~~~A~~y 308 (448)
T PTZ00200 234 TGEGLDWRRADAVTKVKDQGLNC----GSCWAFSSVGSVESLYKIYRDKSVDLSEQELVNCDT-KSQGCSGGYPDTALEY 308 (448)
T ss_pred CCCCccCCCCCCCCCcccCCCcc----chHHHHhHHHHHHHHHHHhcCCCeecCHHHHhhccC-ccCCCCCCcHHHHHHH
Confidence 69999999999999999999 99 999999999999999999999999999999999996 5789999999999999
Q ss_pred HHHhCCcccCCcccCCCCCCcccccccCCceeeeceeEecCCChHHHHHHHHHhCCcEEEEecccccccccCCceEeCCC
Q 019447 92 VIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTGPC 171 (341)
Q Consensus 92 l~~~~Gi~~E~~yPY~~~~~~C~~~~~~~~~~~i~~y~~i~~~~~~~ik~al~~GPV~v~i~~~~~~f~~y~~GIy~~~~ 171 (341)
+.++ ||++|++|||.+..+.|.... ...+.|.+|..++ +.+.|++++++|||+|+|.++ .+|+.|++|||++.|
T Consensus 309 i~~~-Gi~~e~~YPY~~~~~~C~~~~--~~~~~i~~y~~~~--~~~~l~~~l~~GPV~v~i~~~-~~f~~Yk~GIy~~~C 382 (448)
T PTZ00200 309 VKNK-GLSSSSDVPYLAKDGKCVVSS--TKKVYIDSYLVAK--GKDVLNKSLVISPTVVYIAVS-RELLKYKSGVYNGEC 382 (448)
T ss_pred Hhhc-CccccccCCCCCCCCCCcCCC--CCeeEecceEecC--HHHHHHHHHhcCCEEEEeecc-cccccCCCCcccccc
Confidence 9665 999999999999999997543 3345688887664 346788888889999999997 789999999998888
Q ss_pred CCCCCceEEEEEeee--cCCeeEEEEEcCCCCCCCCCcEEEEEccCCCCCCceeeeecccccccC
Q 019447 172 STSLDHAVLIVGYDS--ENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTKT 234 (341)
Q Consensus 172 ~~~~~HaV~IVGyg~--~~g~~yWiVkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~~p~~~ 234 (341)
+..++|||+|||||. ++|.+|||||||||++|||+|||||+|+.. +.|.|||++.+.||+..
T Consensus 383 ~~~~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY~ri~r~~~-g~n~CGI~~~~~~P~~~ 446 (448)
T PTZ00200 383 GKSLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERTNE-GTDKCGILTVGLTPVFY 446 (448)
T ss_pred CCCCcEEEEEEEecccCCCCCceEEEEcCCCCCcccCeeEEEEeCCC-CCCcCCccccceeeEEe
Confidence 877899999999984 468899999999999999999999999753 56799999999999864
No 7
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=1.2e-54 Score=401.95 Aligned_cols=211 Identities=27% Similarity=0.559 Sum_probs=179.7
Q ss_pred CCCCCCCccCC---CCCCccCCC---CcCCCCCchHHHHHHHHHHHHHHHHcC---CCcccCHHHHHhhCCCCCCCCCCC
Q 019447 13 LSFTGHKLQMI---LLIQFRNKS---SCLYLLGACWAFSATGAIEGINKIVTG---SLVSLSEQELIDCDRSYNSGCGGG 83 (341)
Q Consensus 13 lP~~~D~R~~g---~vtpVkdQg---~c~~~~GsCWAfA~~~alE~~~~i~~~---~~~~LSeq~l~dc~~~~~~gC~GG 83 (341)
||.++|||+++ +|+|||||| .| |+|||||++++||++++++++ ..++||+|||+||+. +.||+||
T Consensus 1 lP~~~Dwr~~~~~~~v~~vk~Qg~~~~C----GsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~--~~gC~GG 74 (239)
T cd02698 1 LPKSWDWRNVNGVNYVSPTRNQHIPQYC----GSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG--GGSCHGG 74 (239)
T ss_pred CCCCcccccCCCCcccCccccCCCCCCC----CcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC--CCCccCc
Confidence 69999999998 999999998 89 999999999999999999875 357999999999986 7899999
Q ss_pred cHHHHHHHHHHhCCcccCCcccCCCCCCcccccc--------------cCCceeeeceeEecCCChHHHHHHHHH-hCCc
Q 019447 84 LMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQK--------------LNRHIVTIDGYKDVPENNEKQLLQAVV-AQPV 148 (341)
Q Consensus 84 ~~~~a~~~l~~~~Gi~~E~~yPY~~~~~~C~~~~--------------~~~~~~~i~~y~~i~~~~~~~ik~al~-~GPV 148 (341)
++..||+|++++ |+++|++|||...+..|.... +....+.+..|..++ ++++||++|. +|||
T Consensus 75 ~~~~a~~~~~~~-Gl~~e~~yPY~~~~~~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~~~~~~--~~~~i~~~l~~~GPV 151 (239)
T cd02698 75 DPGGVYEYAHKH-GIPDETCNPYQAKDGECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVS--GRDKMMAEIYARGPI 151 (239)
T ss_pred CHHHHHHHHHHc-CcCCCCeeCCcCCCCCCcCCCCCCCcccCcccccccccceEEeeeceecC--CHHHHHHHHHHcCCE
Confidence 999999999775 999999999998776664310 123346777787774 3667887776 5999
Q ss_pred EEEEecccccccccCCceEeCC-CCCCCCceEEEEEeeecC-CeeEEEEEcCCCCCCCCCcEEEEEccCC-CCCCceeee
Q 019447 149 SVGICGSERAFQLYSSGIFTGP-CSTSLDHAVLIVGYDSEN-GVDYWIIKNSWGRSWGMNGYMHMQRNTG-NSLGICGIN 225 (341)
Q Consensus 149 ~v~i~~~~~~f~~y~~GIy~~~-~~~~~~HaV~IVGyg~~~-g~~yWiVkNSWG~~WGe~GY~~i~r~~~-~~~~~CgI~ 225 (341)
+++|.++ ++|+.|++|||+.. +...++|||+|||||+++ +++|||||||||++|||+|||||+|+.. .-.++|||+
T Consensus 152 ~v~i~~~-~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~ 230 (239)
T cd02698 152 SCGIMAT-EALENYTGGVYKEYVQDPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIE 230 (239)
T ss_pred EEEEEec-ccccccCCeEEccCCCCCcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccc
Confidence 9999997 58999999999764 445679999999999886 8999999999999999999999999872 233599999
Q ss_pred eccccccc
Q 019447 226 MLASYPTK 233 (341)
Q Consensus 226 ~~~~~p~~ 233 (341)
+.+.|+..
T Consensus 231 ~~~~~~~~ 238 (239)
T cd02698 231 EDCAWADP 238 (239)
T ss_pred cceEEEee
Confidence 99998753
No 8
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=2.4e-54 Score=390.21 Aligned_cols=207 Identities=48% Similarity=0.949 Sum_probs=186.3
Q ss_pred CCCCCCccCCCCCCccCCCCcCCCCCchHHHHHHHHHHHHHHHHcCCCcccCHHHHHhhCCCCCCCCCCCcHHHHHHHHH
Q 019447 14 SFTGHKLQMILLIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVI 93 (341)
Q Consensus 14 P~~~D~R~~g~vtpVkdQg~c~~~~GsCWAfA~~~alE~~~~i~~~~~~~LSeq~l~dc~~~~~~gC~GG~~~~a~~~l~ 93 (341)
|..+|||+++.++||+|||.| |+|||||++++||++++++++..++||+|+|++|....+.+|.||++..||+++.
T Consensus 1 P~~~d~r~~~~~~~v~dQg~c----gsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~gC~GG~~~~a~~~~~ 76 (210)
T cd02248 1 PESVDWREKGAVTPVKDQGSC----GSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTSGNNGCNGGNPDNAFEYVK 76 (210)
T ss_pred CCcccCCcCCCCCCCccCCCC----cchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCCCCCCCCCCCHHHhHHHHH
Confidence 788999999999999999999 9999999999999999999999999999999999974478999999999999885
Q ss_pred HhCCcccCCcccCCCCCCcccccccCCceeeeceeEecCCChHHHHHHHHHh-CCcEEEEecccccccccCCceEeCCCC
Q 019447 94 KNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-QPVSVGICGSERAFQLYSSGIFTGPCS 172 (341)
Q Consensus 94 ~~~Gi~~E~~yPY~~~~~~C~~~~~~~~~~~i~~y~~i~~~~~~~ik~al~~-GPV~v~i~~~~~~f~~y~~GIy~~~~~ 172 (341)
+ .|+++|++|||......|.... ..+.++|.+|..+...++++||++|++ |||++++.+. ++|+.|++|||..+..
T Consensus 77 ~-~Gi~~e~~yPY~~~~~~C~~~~-~~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~-~~f~~y~~Giy~~~~~ 153 (210)
T cd02248 77 N-GGLASESDYPYTGKDGTCKYNS-SKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDAS-SSFQFYKGGIYSGPCC 153 (210)
T ss_pred H-CCcCccccCCccCCCCCccCCC-CcccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecC-cccccCCCCceeCCCC
Confidence 4 5999999999999888897653 356688999999987778899999987 8999999986 6899999999976543
Q ss_pred --CCCCceEEEEEeeecCCeeEEEEEcCCCCCCCCCcEEEEEccCCCCCCceeeeeccccc
Q 019447 173 --TSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYP 231 (341)
Q Consensus 173 --~~~~HaV~IVGyg~~~g~~yWiVkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~~p 231 (341)
..++|||+|||||++.+.+|||||||||++||++|||||+|+. +.|||+..+.||
T Consensus 154 ~~~~~~Hav~iVGy~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~~~----~~cgi~~~~~~~ 210 (210)
T cd02248 154 SNTNLNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIRIARGS----NLCGIASYASYP 210 (210)
T ss_pred CCCcCCEEEEEEEEeecCCceEEEEEcCCCCccccCcEEEEEcCC----CccCceeeeecC
Confidence 4568999999999998999999999999999999999999986 499999888775
No 9
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=9.8e-54 Score=395.19 Aligned_cols=205 Identities=30% Similarity=0.573 Sum_probs=171.9
Q ss_pred CCCCCCccC--CCC--CCccCCCCcCCCCCchHHHHHHHHHHHHHHHHcC--CCcccCHHHHHhhCCCCCCCCCCCcHHH
Q 019447 14 SFTGHKLQM--ILL--IQFRNKSSCLYLLGACWAFSATGAIEGINKIVTG--SLVSLSEQELIDCDRSYNSGCGGGLMDY 87 (341)
Q Consensus 14 P~~~D~R~~--g~v--tpVkdQg~c~~~~GsCWAfA~~~alE~~~~i~~~--~~~~LSeq~l~dc~~~~~~gC~GG~~~~ 87 (341)
|.++|||++ +++ +||||||.| |+|||||++++||+++.++++ +.+.||+|+|+||+...+.||+||++..
T Consensus 1 p~~~DwR~~~~~~~~v~~v~dQg~C----GsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~~~~gC~GG~~~~ 76 (236)
T cd02620 1 PESFDAREKWPNCISIGEIRDQGNC----GSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSGCGDGCNGGYPDA 76 (236)
T ss_pred CCcccchhhCCCCCCccccCCcccc----hhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCCCCCCCCCCCHHH
Confidence 788999997 454 599999999 999999999999999999988 7889999999999974478999999999
Q ss_pred HHHHHHHhCCcccCCcccCCCCCCc------------------cccccc---CCceeeeceeEecCCChHHHHHHHHHh-
Q 019447 88 AYQFVIKNHGIDTEKDYPYRGQAGQ------------------CNKQKL---NRHIVTIDGYKDVPENNEKQLLQAVVA- 145 (341)
Q Consensus 88 a~~~l~~~~Gi~~E~~yPY~~~~~~------------------C~~~~~---~~~~~~i~~y~~i~~~~~~~ik~al~~- 145 (341)
||+|+.++ |+++|++|||...... |..... ....+++..+..+. .++++||++|++
T Consensus 77 a~~~i~~~-G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~-~~~~~ik~~l~~~ 154 (236)
T cd02620 77 AWKYLTTT-GVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVP-SDETDIMKEIMTN 154 (236)
T ss_pred HHHHHHhc-CCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecceeeeC-CHHHHHHHHHHHC
Confidence 99999765 9999999999876532 332211 12224455555554 367889988875
Q ss_pred CCcEEEEecccccccccCCceEeCCCCC-CCCceEEEEEeeecCCeeEEEEEcCCCCCCCCCcEEEEEccCCCCCCceee
Q 019447 146 QPVSVGICGSERAFQLYSSGIFTGPCST-SLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGI 224 (341)
Q Consensus 146 GPV~v~i~~~~~~f~~y~~GIy~~~~~~-~~~HaV~IVGyg~~~g~~yWiVkNSWG~~WGe~GY~~i~r~~~~~~~~CgI 224 (341)
|||+++|.+. ++|+.|++|||+..+.. .++|||+|||||++++++|||||||||++|||+|||||+|+. +.|||
T Consensus 155 GPv~v~i~~~-~~f~~Y~~Giy~~~~~~~~~~HaV~iVGyg~~~g~~YWivrNSWG~~WGe~Gy~ri~~~~----~~cgi 229 (236)
T cd02620 155 GPVQAAFTVY-EDFLYYKSGVYQHTSGKQLGGHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGS----NECGI 229 (236)
T ss_pred CCeEEEEEec-hhhhhcCCcEEeecCCCCcCCeEEEEEEEeccCCeeEEEEEeCCCCCCCCCcEEEEEccC----ccccc
Confidence 8999999996 79999999999765544 458999999999989999999999999999999999999975 49999
Q ss_pred eeccc
Q 019447 225 NMLAS 229 (341)
Q Consensus 225 ~~~~~ 229 (341)
++.++
T Consensus 230 ~~~~~ 234 (236)
T cd02620 230 ESEVV 234 (236)
T ss_pred cccee
Confidence 98765
No 10
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=1.5e-53 Score=385.44 Aligned_cols=213 Identities=45% Similarity=0.791 Sum_probs=184.6
Q ss_pred CCCCCCCccC-CCCCCccCCCCcCCCCCchHHHHHHHHHHHHHHHHc-CCCcccCHHHHHhhCCCCCCCCCCCcHHHHHH
Q 019447 13 LSFTGHKLQM-ILLIQFRNKSSCLYLLGACWAFSATGAIEGINKIVT-GSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQ 90 (341)
Q Consensus 13 lP~~~D~R~~-g~vtpVkdQg~c~~~~GsCWAfA~~~alE~~~~i~~-~~~~~LSeq~l~dc~~~~~~gC~GG~~~~a~~ 90 (341)
||.++|||+. +.++||+||+.| |+|||||++++||++++++. ...++||+|+|++|....+.+|+||++..|++
T Consensus 1 lP~~~D~r~~~~~~~~v~dQg~~----gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~~~~~~c~gg~~~~a~~ 76 (219)
T PF00112_consen 1 LPKSFDWRDKGGRITPVRDQGSC----GSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSNKYNKGCDGGSPFDALK 76 (219)
T ss_dssp STSSEEGGGTTTCSG---BTTSS----BTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHSTGTSSTTBBBEHHHHHH
T ss_pred CCCCEecccCCCCcCccccCCcc----cccccchhccceeccccccccccccccccccccccccccccccccCcccccce
Confidence 7999999998 499999999999 99999999999999999999 78899999999999974467999999999999
Q ss_pred HHHHhCCcccCCcccCCCCC-CcccccccCCceeeeceeEecCCChHHHHHHHHHh-CCcEEEEecccccccccCCceEe
Q 019447 91 FVIKNHGIDTEKDYPYRGQA-GQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-QPVSVGICGSERAFQLYSSGIFT 168 (341)
Q Consensus 91 ~l~~~~Gi~~E~~yPY~~~~-~~C~~~~~~~~~~~i~~y~~i~~~~~~~ik~al~~-GPV~v~i~~~~~~f~~y~~GIy~ 168 (341)
+++++.|+++|++|||.... ..|.........+++..|..+...++++||++|++ |||+++|.+...+|+.|++|||.
T Consensus 77 ~~~~~~Gi~~e~~~pY~~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~ 156 (219)
T PF00112_consen 77 YIKNNNGIVTEEDYPYNGNENPTCKSKKSNSYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYD 156 (219)
T ss_dssp HHHHHTSBEBTTTS--SSSSSCSSCHSGGGEEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEEC
T ss_pred eecccCcccccccccccccccccccccccccccccccccccccccchhHHHHHHhhCceeeeeeeccccccccccceeee
Confidence 99885699999999999877 68877644334688999999988789999999997 99999999985469999999997
Q ss_pred CC-CC-CCCCceEEEEEeeecCCeeEEEEEcCCCCCCCCCcEEEEEccCCCCCCceeeeecccccc
Q 019447 169 GP-CS-TSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPT 232 (341)
Q Consensus 169 ~~-~~-~~~~HaV~IVGyg~~~g~~yWiVkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~~p~ 232 (341)
.. +. ..++|||+|||||++.+++|||||||||++||++|||||+|+.+ ++|||+..++||+
T Consensus 157 ~~~~~~~~~~Hav~iVGy~~~~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~---~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 157 PPDCSNESGGHAVLIVGYDDENGKGYWIVKNSWGTDWGDNGYFRISYDYN---NECGIESQAVYPI 219 (219)
T ss_dssp STSSSSSSEEEEEEEEEEEEETTEEEEEEE-SBTTTSTBTTEEEEESSSS---SGGGTTSSEEEEE
T ss_pred ccccccccccccccccccccccceeeEeeehhhCCccCCCeEEEEeeCCC---CcCccCceeeecC
Confidence 74 44 35699999999999999999999999999999999999999864 5999999999996
No 11
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=1.3e-50 Score=408.85 Aligned_cols=212 Identities=21% Similarity=0.402 Sum_probs=175.2
Q ss_pred cccCCCCCCCCccCC---CCCCccCCCC---cCCCCCchHHHHHHHHHHHHHHHHcC------CCcccCHHHHHhhCCCC
Q 019447 9 DLALLSFTGHKLQMI---LLIQFRNKSS---CLYLLGACWAFSATGAIEGINKIVTG------SLVSLSEQELIDCDRSY 76 (341)
Q Consensus 9 ~~~~lP~~~D~R~~g---~vtpVkdQg~---c~~~~GsCWAfA~~~alE~~~~i~~~------~~~~LSeq~l~dc~~~~ 76 (341)
..++||..+|||++| +|+||||||. | |||||||++++||++++|+++ +.+.||+|+|+||+. .
T Consensus 201 ~~~~LP~sfDWR~~gg~~~VtpVrdQg~~~~C----GSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~-~ 275 (548)
T PTZ00364 201 LGDPPPAAWSWGDVGGASFLPAAPPASPGRGC----NSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQ-Y 275 (548)
T ss_pred cccCCCCccccCcCCCCccCCCCcCCCCCCCC----cCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccC-C
Confidence 357899999999988 8999999999 9 999999999999999999883 468999999999986 5
Q ss_pred CCCCCCCcHHHHHHHHHHhCCcccCCcc--cCCCCCC---cccccccCCcee------eeceeEecCCChHHHHHHHHH-
Q 019447 77 NSGCGGGLMDYAYQFVIKNHGIDTEKDY--PYRGQAG---QCNKQKLNRHIV------TIDGYKDVPENNEKQLLQAVV- 144 (341)
Q Consensus 77 ~~gC~GG~~~~a~~~l~~~~Gi~~E~~y--PY~~~~~---~C~~~~~~~~~~------~i~~y~~i~~~~~~~ik~al~- 144 (341)
+.||+||++..|++|+.++ ||++|++| ||.+.++ .|..... ...+ .+.+|..+. +++++|+.+|+
T Consensus 276 n~GCdGG~p~~A~~yi~~~-GI~tE~dY~~PY~~~dg~~~~Ck~~~~-~~~y~~~~~~~I~gyy~~~-~~e~~I~~eI~~ 352 (548)
T PTZ00364 276 GQGCAGGFPEEVGKFAETF-GILTTDSYYIPYDSGDGVERACKTRRP-SRRYYFTNYGPLGGYYGAV-TDPDEIIWEIYR 352 (548)
T ss_pred CCCCCCCcHHHHHHHHHhC-CcccccccCCCCCCCCCCCCCCCCCcc-cceeeeeeeEEecceeecC-CcHHHHHHHHHH
Confidence 8899999999999999655 99999999 9987655 4865432 2222 344444444 35677887776
Q ss_pred hCCcEEEEecccccccccCCceEeCC---------C-----------CCCCCceEEEEEeee-cCCeeEEEEEcCCCC--
Q 019447 145 AQPVSVGICGSERAFQLYSSGIFTGP---------C-----------STSLDHAVLIVGYDS-ENGVDYWIIKNSWGR-- 201 (341)
Q Consensus 145 ~GPV~v~i~~~~~~f~~y~~GIy~~~---------~-----------~~~~~HaV~IVGyg~-~~g~~yWiVkNSWG~-- 201 (341)
+|||+|+|+++ ++|+.|++|||.+. + ...++|||+|||||+ ++|.+|||||||||+
T Consensus 353 ~GPVsVaIda~-~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~ 431 (548)
T PTZ00364 353 HGPVPASVYAN-SDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRR 431 (548)
T ss_pred cCCeEEEEEec-hHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEECCCCCCC
Confidence 59999999997 68999999987521 1 134699999999997 478899999999999
Q ss_pred CCCCCcEEEEEccCCCCCCceeeeeccccccc
Q 019447 202 SWGMNGYMHMQRNTGNSLGICGINMLASYPTK 233 (341)
Q Consensus 202 ~WGe~GY~~i~r~~~~~~~~CgI~~~~~~p~~ 233 (341)
+|||+|||||+|+.+ .|||++.++....
T Consensus 432 ~WGE~GYfRI~RG~N----~CGIes~~v~~~~ 459 (548)
T PTZ00364 432 SWCDGGTRKIARGVN----AYNIESEVVVMYW 459 (548)
T ss_pred CcccCCeEEEEcCCC----cccccceeeeeee
Confidence 999999999999854 9999999874433
No 12
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=5.6e-50 Score=408.57 Aligned_cols=215 Identities=26% Similarity=0.483 Sum_probs=176.9
Q ss_pred cccCCCCCCCCccC----CCCCCccCCCCcCCCCCchHHHHHHHHHHHHHHHHcCCC----------cccCHHHHHhhCC
Q 019447 9 DLALLSFTGHKLQM----ILLIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSL----------VSLSEQELIDCDR 74 (341)
Q Consensus 9 ~~~~lP~~~D~R~~----g~vtpVkdQg~c~~~~GsCWAfA~~~alE~~~~i~~~~~----------~~LSeq~l~dc~~ 74 (341)
.+..||..+|||++ ++++||+|||.| |||||||++++||++++|+.+.. ..||+|+|+||+.
T Consensus 377 ~~~~LP~sfDWRd~~~~~~~vtpVkdQG~C----GSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~ 452 (693)
T PTZ00049 377 EIDELPKNFTWGDPFNNNTREYDVTNQLLC----GSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSF 452 (693)
T ss_pred ccccCCCCEecCcCCCCCCcccCCCCCccC----cHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCC
Confidence 46799999999984 689999999999 99999999999999999986431 2799999999986
Q ss_pred CCCCCCCCCcHHHHHHHHHHhCCcccCCcccCCCCCCcccccccC-----------------------------------
Q 019447 75 SYNSGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLN----------------------------------- 119 (341)
Q Consensus 75 ~~~~gC~GG~~~~a~~~l~~~~Gi~~E~~yPY~~~~~~C~~~~~~----------------------------------- 119 (341)
.+.||+||++..|++|+.++ ||++|++|||.+..+.|......
T Consensus 453 -~nqGC~GG~~~~A~kya~~~-GI~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (693)
T PTZ00049 453 -YDQGCNGGFPYLVSKMAKLQ-GIPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPI 530 (693)
T ss_pred -CCCCcCCCcHHHHHHHHHHC-CCCcCCccCCcCCCCCCCCCCCCccccccccccccccccccccccccccccccccccc
Confidence 58899999999999999665 99999999999887778542110
Q ss_pred ---CceeeeceeEecC-------CChHHHHHHHHH-hCCcEEEEecccccccccCCceEeCC-------CCC--------
Q 019447 120 ---RHIVTIDGYKDVP-------ENNEKQLLQAVV-AQPVSVGICGSERAFQLYSSGIFTGP-------CST-------- 173 (341)
Q Consensus 120 ---~~~~~i~~y~~i~-------~~~~~~ik~al~-~GPV~v~i~~~~~~f~~y~~GIy~~~-------~~~-------- 173 (341)
...+.+..|..+. .+++++|+++|+ +|||+|+|++. ++|++|++|||+.. |..
T Consensus 531 ~~~~~r~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~-~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~ 609 (693)
T PTZ00049 531 SSEPARWYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEAS-PDFYDYADGVYYVEDFPHARRCTVDLPKHNGV 609 (693)
T ss_pred cccccceeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEec-hhhhcCCCccccCcccccccccCCcccccccc
Confidence 1123345555553 245777887776 59999999996 68999999999742 421
Q ss_pred -------CCCceEEEEEeeec--CCe--eEEEEEcCCCCCCCCCcEEEEEccCCCCCCceeeeecccccccC
Q 019447 174 -------SLDHAVLIVGYDSE--NGV--DYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINMLASYPTKT 234 (341)
Q Consensus 174 -------~~~HaV~IVGyg~~--~g~--~yWiVkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~~~~p~~~ 234 (341)
.++|||+|||||.+ +|. +|||||||||++|||+|||||+|+.+ .|||++.+.|++..
T Consensus 610 ~~~~G~e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~N----~CGIEs~a~~~~pd 677 (693)
T PTZ00049 610 YNITGWEKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKN----FSGIESQSLFIEPD 677 (693)
T ss_pred ccccccccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCCC----ccCCccceeEEeee
Confidence 35899999999975 453 79999999999999999999999854 99999999998754
No 13
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=3.5e-47 Score=336.15 Aligned_cols=166 Identities=52% Similarity=0.956 Sum_probs=147.7
Q ss_pred CCCCCCCccCCCCCCccCCCCcCCCCCchHHHHHHHHHHHHHHHHcCCCcccCHHHHHhhCCCCCCCCCCCcHHHHHHHH
Q 019447 13 LSFTGHKLQMILLIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFV 92 (341)
Q Consensus 13 lP~~~D~R~~g~vtpVkdQg~c~~~~GsCWAfA~~~alE~~~~i~~~~~~~LSeq~l~dc~~~~~~gC~GG~~~~a~~~l 92 (341)
||..+|||++++++||||||.| |+|||||++++||+++++++++.++||+|+|++|....+.||+||.+..|++|+
T Consensus 1 lP~~~D~R~~~~~~~v~dQg~C----GsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~~~~gC~GG~~~~a~~~~ 76 (174)
T smart00645 1 LPESFDWRKKGAVTPVKDQGQC----GSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTGGNNGCNGGLPDNAFEYI 76 (174)
T ss_pred CCCcCcccccCCCCccccCccc----chHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCCCCCCCCCcCHHHHHHHH
Confidence 6899999999999999999999 999999999999999999999899999999999997435699999999999999
Q ss_pred HHhCCcccCCcccCCCCCCcccccccCCceeeeceeEecCCChHHHHHHHHHhCCcEEEEecccccccccCCceEeC-CC
Q 019447 93 IKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQPVSVGICGSERAFQLYSSGIFTG-PC 171 (341)
Q Consensus 93 ~~~~Gi~~E~~yPY~~~~~~C~~~~~~~~~~~i~~y~~i~~~~~~~ik~al~~GPV~v~i~~~~~~f~~y~~GIy~~-~~ 171 (341)
.++.|+++|++|||.. ++.+.+. +|+.|++|||+. .|
T Consensus 77 ~~~~Gi~~e~~~PY~~----------------------------------------~~~~~~~--~f~~Y~~Gi~~~~~~ 114 (174)
T smart00645 77 KKNGGLETESCYPYTG----------------------------------------SVAIDAS--DFQFYKSGIYDHPGC 114 (174)
T ss_pred HHcCCcccccccCccc----------------------------------------EEEEEcc--cccCCcCeEECCCCC
Confidence 7755999999999975 5556553 599999999976 45
Q ss_pred CCC-CCceEEEEEeeec-CCeeEEEEEcCCCCCCCCCcEEEEEccCCCCCCceeeeec
Q 019447 172 STS-LDHAVLIVGYDSE-NGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINML 227 (341)
Q Consensus 172 ~~~-~~HaV~IVGyg~~-~g~~yWiVkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~~ 227 (341)
... ++|+|+|||||.+ ++++|||||||||+.|||+|||||.|+. .+.|||+..
T Consensus 115 ~~~~~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~---~~~c~i~~~ 169 (174)
T smart00645 115 GSGTLDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGK---NNECGIEAS 169 (174)
T ss_pred CCCcccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCC---CCccCceee
Confidence 543 6999999999987 8899999999999999999999999985 148999554
No 14
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=2.3e-45 Score=332.40 Aligned_cols=194 Identities=34% Similarity=0.532 Sum_probs=167.6
Q ss_pred CCCCccCCCCCCccCCCCcCCCCCchHHHHHHHHHHHHHHHHcC--CCcccCHHHHHhhCCCC----CCCCCCCcHHHHH
Q 019447 16 TGHKLQMILLIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTG--SLVSLSEQELIDCDRSY----NSGCGGGLMDYAY 89 (341)
Q Consensus 16 ~~D~R~~g~vtpVkdQg~c~~~~GsCWAfA~~~alE~~~~i~~~--~~~~LSeq~l~dc~~~~----~~gC~GG~~~~a~ 89 (341)
.+|||+.+ ++||||||.| |+|||||++++||++++++.+ ..++||+|+|++|.... ..+|.||.+..++
T Consensus 1 ~~d~r~~~-~~~v~dQg~~----gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~ 75 (223)
T cd02619 1 SVDLRPLR-LTPVKNQGSR----GSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSAL 75 (223)
T ss_pred CCcchhcC-CCCcccCCCC----cCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHH
Confidence 47999988 9999999999 999999999999999999987 78999999999999743 3699999999999
Q ss_pred H-HHHHhCCcccCCcccCCCCCCccccc---ccCCceeeeceeEecCCChHHHHHHHHHh-CCcEEEEecccccccccCC
Q 019447 90 Q-FVIKNHGIDTEKDYPYRGQAGQCNKQ---KLNRHIVTIDGYKDVPENNEKQLLQAVVA-QPVSVGICGSERAFQLYSS 164 (341)
Q Consensus 90 ~-~l~~~~Gi~~E~~yPY~~~~~~C~~~---~~~~~~~~i~~y~~i~~~~~~~ik~al~~-GPV~v~i~~~~~~f~~y~~ 164 (341)
. ++ ++.|+++|++|||......|... ......+++..|..+..+++++||++|++ |||++++.+. +.|..|++
T Consensus 76 ~~~~-~~~Gi~~e~~~Py~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~-~~~~~~~~ 153 (223)
T cd02619 76 LKLV-ALKGIPPEEDYPYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVY-SGFDRLKE 153 (223)
T ss_pred HHHH-HHcCCCccccCCCCCCCCCCCCCCccchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcc-cchhcccC
Confidence 8 66 45699999999999877766432 23445688999999988888999999987 8999999987 78999999
Q ss_pred ceEe------C-CCCCCCCceEEEEEeeecC--CeeEEEEEcCCCCCCCCCcEEEEEccCC
Q 019447 165 GIFT------G-PCSTSLDHAVLIVGYDSEN--GVDYWIIKNSWGRSWGMNGYMHMQRNTG 216 (341)
Q Consensus 165 GIy~------~-~~~~~~~HaV~IVGyg~~~--g~~yWiVkNSWG~~WGe~GY~~i~r~~~ 216 (341)
|+|. . .....++|||+|||||++. +++|||||||||+.||++||+||+|+..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~~~ 214 (223)
T cd02619 154 GIIYEEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYEDV 214 (223)
T ss_pred ccccccccccccCCCccCCeEEEEEeecCCCCCCCCEEEEEeCCCCccccCCEEEEehhhh
Confidence 9862 1 1233468999999999986 8999999999999999999999999853
No 15
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=6e-42 Score=358.56 Aligned_cols=202 Identities=22% Similarity=0.403 Sum_probs=160.4
Q ss_pred CCCccCCCCcCCCCCchHHHHHHHHHHHHHHHHcCCCcccCHHHHHhhCCC-CCCCCCCCc-HHHHHHHHHHhCCcccCC
Q 019447 25 LIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRS-YNSGCGGGL-MDYAYQFVIKNHGIDTEK 102 (341)
Q Consensus 25 vtpVkdQg~c~~~~GsCWAfA~~~alE~~~~i~~~~~~~LSeq~l~dc~~~-~~~gC~GG~-~~~a~~~l~~~~Gi~~E~ 102 (341)
..||||||.| |+|||||++++||+++++++++.+.||+|+|+||+.. .+.||.||+ +..++.|+.+++|+++|+
T Consensus 544 ~i~VKDQG~C----GSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptES 619 (1004)
T PTZ00462 544 KIQIEDQGNC----AISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADS 619 (1004)
T ss_pred CCCcccCCcc----hHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccc
Confidence 4699999999 9999999999999999999999999999999999863 367999997 455668887776799999
Q ss_pred cccCCC--CCCccccccc-----------------CCceeeeceeEecCCC----h----HHHHHHHHHh-CCcEEEEec
Q 019447 103 DYPYRG--QAGQCNKQKL-----------------NRHIVTIDGYKDVPEN----N----EKQLLQAVVA-QPVSVGICG 154 (341)
Q Consensus 103 ~yPY~~--~~~~C~~~~~-----------------~~~~~~i~~y~~i~~~----~----~~~ik~al~~-GPV~v~i~~ 154 (341)
+|||.. ..+.|..... ....+.+.+|..+... + +++|+++|++ |||+|+|++
T Consensus 620 dYPYt~k~~~g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~IdA 699 (1004)
T PTZ00462 620 NYLYNYTKVGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKA 699 (1004)
T ss_pred cCCCccCCCCCCCCCCcccccccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEEEEe
Confidence 999975 4567864211 0112344566655431 1 4688888886 999999997
Q ss_pred ccccccccC-CceE-eCCCCC-CCCceEEEEEeeec-----CCeeEEEEEcCCCCCCCCCcEEEEEccCCCCCCceeeee
Q 019447 155 SERAFQLYS-SGIF-TGPCST-SLDHAVLIVGYDSE-----NGVDYWIIKNSWGRSWGMNGYMHMQRNTGNSLGICGINM 226 (341)
Q Consensus 155 ~~~~f~~y~-~GIy-~~~~~~-~~~HaV~IVGyg~~-----~g~~yWiVkNSWG~~WGe~GY~~i~r~~~~~~~~CgI~~ 226 (341)
. +|+.|. +||| ...|+. .++|||+|||||.+ ++++|||||||||+.|||+|||||.|.. .+.|||+.
T Consensus 700 s--df~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g---~n~CGin~ 774 (1004)
T PTZ00462 700 E--NVLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYG---PSHCEDNF 774 (1004)
T ss_pred e--hHHhhhcCCccccCCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCC---CCCCccch
Confidence 4 688884 8986 445764 46999999999974 2578999999999999999999999952 45899988
Q ss_pred cccccccCC
Q 019447 227 LASYPTKTG 235 (341)
Q Consensus 227 ~~~~p~~~~ 235 (341)
...+++...
T Consensus 775 i~t~~~fn~ 783 (1004)
T PTZ00462 775 IHSVVIFNI 783 (1004)
T ss_pred heeeeeEee
Confidence 888877753
No 16
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=100.00 E-value=2.9e-37 Score=286.46 Aligned_cols=210 Identities=26% Similarity=0.503 Sum_probs=173.3
Q ss_pred ccCCCCCCCCccC--CCCCCccCCCCcCCCCCchHHHHHHHHHHHHHHHHcCC--CcccCHHHHHhhCCCCCCCCCCCcH
Q 019447 10 LALLSFTGHKLQM--ILLIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGS--LVSLSEQELIDCDRSYNSGCGGGLM 85 (341)
Q Consensus 10 ~~~lP~~~D~R~~--g~vtpVkdQg~c~~~~GsCWAfA~~~alE~~~~i~~~~--~~~LSeq~l~dc~~~~~~gC~GG~~ 85 (341)
..+||..++=|+| +++.++.|||+| ++.|||++++....+++|.... ...||+|+|++|......||+||+.
T Consensus 206 ~~~LPE~F~As~KWp~liH~plDQgnC----a~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h~q~GC~gG~l 281 (470)
T KOG1544|consen 206 GEVLPEAFEASEKWPNLIHEPLDQGNC----AGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTHQQQGCRGGRL 281 (470)
T ss_pred ccccchhhhhhhcCCccccCccccCCc----ccceeeeeehhccceeEEeeccccccccChHHhcchhhhhhccCccCcc
Confidence 3678888888875 899999999999 9999999999999999988654 4589999999999878999999999
Q ss_pred HHHHHHHHHhCCcccCCcccCCCCC----Cc------------------ccccccCC-ceeeeceeEecCCChHHHHHHH
Q 019447 86 DYAYQFVIKNHGIDTEKDYPYRGQA----GQ------------------CNKQKLNR-HIVTIDGYKDVPENNEKQLLQA 142 (341)
Q Consensus 86 ~~a~~~l~~~~Gi~~E~~yPY~~~~----~~------------------C~~~~~~~-~~~~i~~y~~i~~~~~~~ik~a 142 (341)
+.|+-||.+. |++...+|||...+ +. |.....+. .++..+--..+.++.+++||++
T Consensus 282 DRAWWYlRKr-GvVsdhCYP~~~dQ~~~~~~C~m~sR~~grgkRqat~~CPn~~~~Sn~iyq~tPPYrVSSnE~eImkEl 360 (470)
T KOG1544|consen 282 DRAWWYLRKR-GVVSDHCYPFSGDQAGPAPPCMMHSRAMGRGKRQATAHCPNSYVNSNDIYQVTPPYRVSSNEKEIMKEL 360 (470)
T ss_pred cchheeeecc-cccccccccccCCCCCCCCCceeeccccCcccccccCcCCCcccccCceeeecCCeeccCCHHHHHHHH
Confidence 9999999665 99999999998532 22 33222222 4455555566777778888888
Q ss_pred HHhCCcEEEEecccccccccCCceEeCCCC---------CCCCceEEEEEeeecC-----CeeEEEEEcCCCCCCCCCcE
Q 019447 143 VVAQPVSVGICGSERAFQLYSSGIFTGPCS---------TSLDHAVLIVGYDSEN-----GVDYWIIKNSWGRSWGMNGY 208 (341)
Q Consensus 143 l~~GPV~v~i~~~~~~f~~y~~GIy~~~~~---------~~~~HaV~IVGyg~~~-----g~~yWiVkNSWG~~WGe~GY 208 (341)
|.||||.+.+.+ +++|..|++|||..... ..+.|+|.|.|||++. ..+|||..||||+.|||+||
T Consensus 361 M~NGPVQA~m~V-HEDFF~YkgGiY~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GY 439 (470)
T KOG1544|consen 361 MENGPVQALMEV-HEDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGY 439 (470)
T ss_pred HhCCChhhhhhh-hhhhhhhccceeeccccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCce
Confidence 889999988876 58999999999975432 1357999999999873 36799999999999999999
Q ss_pred EEEEccCCCCCCceeeeeccc
Q 019447 209 MHMQRNTGNSLGICGINMLAS 229 (341)
Q Consensus 209 ~~i~r~~~~~~~~CgI~~~~~ 229 (341)
|||.|+++ .|.|+++..
T Consensus 440 FriLRGvN----ecdIEsfvI 456 (470)
T KOG1544|consen 440 FRILRGVN----ECDIESFVI 456 (470)
T ss_pred EEEecccc----chhhhHhhh
Confidence 99999976 899998754
No 17
>KOG4296 consensus Epithelin/granulin [Signal transduction mechanisms]
Probab=99.96 E-value=1.4e-30 Score=196.27 Aligned_cols=85 Identities=38% Similarity=0.895 Sum_probs=78.5
Q ss_pred CCCCcccCCCCceeeccCccCccccccccCCCCceecCCCCCcCCCCCCcccCCCCeeecCCCCCcchHHHHHhhcCCcc
Q 019447 249 CSLLTYCAAGETCCCGSSILGICLSWKCCGFSSAVCCSDHRYCCPSNYPICDSVRHQCLTRLTGNVTAAEAIEMRGSSWK 328 (341)
Q Consensus 249 c~~~~~c~~~~tcc~~~~~~~~~~~~~ccp~~~a~cc~d~~hccp~~~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~~~~ 328 (341)
||.+++||+++||||+.+++|+|.+||||||++||||+|+.|||||+||+||+.+++|+++. ++++++++++|+.+...
T Consensus 1 Cd~~~~Cp~~~TCCcl~e~~~~cfsWgCCp~e~A~CCdD~~hCCPh~ypVCD~~~~~Cl~k~-ns~~sikal~kkpA~~~ 79 (90)
T KOG4296|consen 1 CDSYTECPDSETCCCLYEYGGYCFSWGCCPMESAVCCDDRSHCCPHGYPVCDLQRSTCLMKK-NSPTSIKALKKKPAIKT 79 (90)
T ss_pred CCcceecCCCCceEEeeecCceeceeccccCCcceeecCCCccCCCCCcccccccceeeccC-CCcccchhhccCCcccc
Confidence 89999999999999999999999999999999999999999999999999999999999999 99999999999976654
Q ss_pred CCCccc
Q 019447 329 FGSWSS 334 (341)
Q Consensus 329 ~~~~~~ 334 (341)
++..+.
T Consensus 80 ~~~~~~ 85 (90)
T KOG4296|consen 80 LERNQK 85 (90)
T ss_pred ccccch
Confidence 444433
No 18
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-29 Score=239.63 Aligned_cols=198 Identities=25% Similarity=0.322 Sum_probs=137.1
Q ss_pred cccCCCCCCCCccCCCCCCccCCCCcCCCCCchHHHHHHHHHHHHHHHHcCCCcccCHHHHHhhCC-CCCCC-----CCC
Q 019447 9 DLALLSFTGHKLQMILLIQFRNKSSCLYLLGACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDR-SYNSG-----CGG 82 (341)
Q Consensus 9 ~~~~lP~~~D~R~~g~vtpVkdQg~c~~~~GsCWAfA~~~alE~~~~i~~~~~~~LSeq~l~dc~~-~~~~g-----C~G 82 (341)
+...||..+|||+.|.|+||||||.+ |+||||++++++|+.+.-.. ..++|+..+..-.. .+..+ -+|
T Consensus 95 a~~s~~~~fd~r~~g~vs~v~dQg~~----Gscwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~ye~~fd~~~~d~ 168 (372)
T COG4870 95 ASASLPSYFDRRDEGKVSPVKDQGSG----GSCWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPYEKGFDYTSNDG 168 (372)
T ss_pred ccccchhheeeeccCCcccccccCcc----cceEeeeehhhhhheecccc--cccccccchhhhcCCCccccCCCccccC
Confidence 34558999999999999999999999 99999999999998765433 34555554432211 11112 237
Q ss_pred CcHHHHHHHHHHhCCcccCCcccCCCCCCcccccccCCceeeeceeEecCCC----hHHHHHHHHHh-CCcE--EEEecc
Q 019447 83 GLMDYAYQFVIKNHGIDTEKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPEN----NEKQLLQAVVA-QPVS--VGICGS 155 (341)
Q Consensus 83 G~~~~a~~~l~~~~Gi~~E~~yPY~~~~~~C~~~~~~~~~~~i~~y~~i~~~----~~~~ik~al~~-GPV~--v~i~~~ 155 (341)
|....+..|+.+..|.+.|.+-||......|....+..+.+. .-..++.. +...||+++.. |-+. +.|++.
T Consensus 169 g~~~m~~a~l~e~sgpv~et~d~y~~~s~~~~~~~p~~k~~~--~~~~i~~~~~~LdnG~i~~~~~~yg~~s~~~~id~~ 246 (372)
T COG4870 169 GNADMSAAYLTEWSGPVYETDDPYSENSYFSPTNLPVTKHVQ--EAQIIPSRKKYLDNGNIKAMFGFYGAVSSSMYIDAT 246 (372)
T ss_pred CccccccccccccCCcchhhcCccccccccCCcCCchhhccc--cceecccchhhhcccchHHHHhhhccccceeEEecc
Confidence 887778888888899999999999987666655332222221 11122211 22346777764 5444 335543
Q ss_pred cccccccCCceEeCCCCCCCCceEEEEEeeec----------CCeeEEEEEcCCCCCCCCCcEEEEEccCC
Q 019447 156 ERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSE----------NGVDYWIIKNSWGRSWGMNGYMHMQRNTG 216 (341)
Q Consensus 156 ~~~f~~y~~GIy~~~~~~~~~HaV~IVGyg~~----------~g~~yWiVkNSWG~~WGe~GY~~i~r~~~ 216 (341)
.+.....+.|.....+..+|||+||||+|. .|.++||||||||++||++|||||+|...
T Consensus 247 --~~~~~~~~~~~~~s~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~ya 315 (372)
T COG4870 247 --NSLGICIPYPYVDSGENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYYA 315 (372)
T ss_pred --cccccccCCCCCCccccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeeec
Confidence 333334455544444678999999999997 36789999999999999999999999764
No 19
>smart00277 GRAN Granulin.
Probab=99.89 E-value=5.1e-24 Score=148.29 Aligned_cols=51 Identities=43% Similarity=1.042 Sum_probs=48.9
Q ss_pred CCCcccCCCCceeeccCccCccccccccCCCCceecCCCCCcCCCCCCcccCCCCee
Q 019447 250 SLLTYCAAGETCCCGSSILGICLSWKCCGFSSAVCCSDHRYCCPSNYPICDSVRHQC 306 (341)
Q Consensus 250 ~~~~~c~~~~tcc~~~~~~~~~~~~~ccp~~~a~cc~d~~hccp~~~~~c~~~~~~c 306 (341)
|++++||+++|||++.+ ++||||||++||||+||.||||+|| +||++.++|
T Consensus 1 d~~~~Cp~~~TCC~~~~-----g~wgCCP~~~AvCC~D~~hCCP~gy-~Cd~~~~~C 51 (51)
T smart00277 1 DSATSCPDGTTCCLLPQ-----GSWGCCPLPNAVCCEDGIHCCPHGY-HCDTDGGTC 51 (51)
T ss_pred CCcccCCCCCeEcCCCC-----CCEECCCCCCCCccCCCCccCCCCC-eeCCCCCcC
Confidence 56899999999999999 8999999999999999999999999 999999887
No 20
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.87 E-value=5.8e-22 Score=196.70 Aligned_cols=179 Identities=24% Similarity=0.389 Sum_probs=126.1
Q ss_pred CCccCCCCcCCCCCchHHHHHHHHHHHHHHH-HcCCCcccCHHHHHhhCC----------------C-----------CC
Q 019447 26 IQFRNKSSCLYLLGACWAFSATGAIEGINKI-VTGSLVSLSEQELIDCDR----------------S-----------YN 77 (341)
Q Consensus 26 tpVkdQg~c~~~~GsCWAfA~~~alE~~~~i-~~~~~~~LSeq~l~dc~~----------------~-----------~~ 77 (341)
+||+||+.- |.||.||+...||..+.+ .+.+.++||+.+|+.-+. . ..
T Consensus 55 ~~vtnQ~~S----GrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~ 130 (437)
T cd00585 55 EPVTNQKSS----GRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLAN 130 (437)
T ss_pred CCcccCCCC----chhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhC
Confidence 499999998 999999999999998776 456789999988765211 0 13
Q ss_pred CCCCCCcHHHHHHHHHHhCCcccCCcccCCCC--C-------------------------C-------------------
Q 019447 78 SGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQ--A-------------------------G------------------- 111 (341)
Q Consensus 78 ~gC~GG~~~~a~~~l~~~~Gi~~E~~yPY~~~--~-------------------------~------------------- 111 (341)
..-+||.-..++..| +++|+++++.||-+.. . +
T Consensus 131 ~~~DGGqw~m~~~li-~KYGvVPk~~~pet~~s~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~~~iy~ 209 (437)
T cd00585 131 PQNDGGQWDMLVNLI-EKYGLVPKSVMPESFNSENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEMLKEVYR 209 (437)
T ss_pred CcCCCCchHHHHHHH-HHcCCCcccccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 456799999999988 4569999999985311 0 0
Q ss_pred -------ccccc------ccC------------------------------------C---ceeee-----------cee
Q 019447 112 -------QCNKQ------KLN------------------------------------R---HIVTI-----------DGY 128 (341)
Q Consensus 112 -------~C~~~------~~~------------------------------------~---~~~~i-----------~~y 128 (341)
..+.. .+. . +.+.+ ..|
T Consensus 210 il~~~lG~pP~~F~~~y~dkd~~~~~~~~~TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~~y~ve~~~Nv~~g~~~~y 289 (437)
T cd00585 210 ILAIALGEPPEKFDWEYRDKDKKYHEIKELTPLEFYKKYVKFDLDDYVSLINDPRPDKPYNKLYTVEYLGNVVGGRPILY 289 (437)
T ss_pred HHHHHcCCCCceEEEEEEeCCCCeeeCCCcCHHHHHHHhcCCCccceEEEEeCCCCCCCCCceEEEecCCcccccccceE
Confidence 00000 000 0 00000 012
Q ss_pred EecCCChHHHHH----HHHHhC-CcEEEEecccccccccCCceEeCC----------------------CCCCCCceEEE
Q 019447 129 KDVPENNEKQLL----QAVVAQ-PVSVGICGSERAFQLYSSGIFTGP----------------------CSTSLDHAVLI 181 (341)
Q Consensus 129 ~~i~~~~~~~ik----~al~~G-PV~v~i~~~~~~f~~y~~GIy~~~----------------------~~~~~~HaV~I 181 (341)
..++ .+.|+ ++|.+| ||.+++++. .|+.|++||++.. +.+..+|||+|
T Consensus 290 ~Nvp---~d~l~~~~~~~L~~g~pV~~g~Dv~--~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~i 364 (437)
T cd00585 290 LNVP---MDVLKKAAIAQLKDGEPVWFGCDVG--KFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVL 364 (437)
T ss_pred EecC---HHHHHHHHHHHHhcCCCEEEEEEcC--hhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEE
Confidence 2222 34444 456664 999999995 5779999999643 12345899999
Q ss_pred EEeeecC-Ce-eEEEEEcCCCCCCCCCcEEEEEcc
Q 019447 182 VGYDSEN-GV-DYWIIKNSWGRSWGMNGYMHMQRN 214 (341)
Q Consensus 182 VGyg~~~-g~-~yWiVkNSWG~~WGe~GY~~i~r~ 214 (341)
|||+.+. |+ .||+||||||+.||++||++|+++
T Consensus 365 vGv~~D~~g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 365 TGVDLDEDGKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred EEEEecCCCCcceEEEEcccCCCCCCCcceehhHH
Confidence 9999763 65 699999999999999999999986
No 21
>PF00396 Granulin: Granulin; InterPro: IPR000118 Metazoan granulins [] are a family of cysteine-rich peptides of about 6 Kd which may have multiple biological activity. A precursor protein (known as acrogranin) potentially encodes seven different forms of granulin (grnA to grnG) which are probably released by post-translational proteolytic processing. Granulins are evolutionary related to a PMP-D1, a peptide extracted from the pars intercerebralis of migratory locusts []. A schematic representation of the structure of a granulin is shown below: xxxCxxxxxCxxxxxCCxxxxxxxxCCxxxxxxCCxxxxxCCxxxxxCxxxxxxCx 'C': conserved cysteine probably involved in a disulphide bond. In plants a granulin domain is often associated with the C terminus of cysteine proteases belong to the MEROPS peptidase family C1, subfamily C1A (papain).; PDB: 1I8Y_A 1QGM_A 1I8X_A 2JYT_A 2JYU_A 1FWO_A 2JYV_A 2JYE_A 1G26_A.
Probab=99.76 E-value=1.8e-19 Score=121.83 Aligned_cols=43 Identities=44% Similarity=1.159 Sum_probs=40.5
Q ss_pred ceeeccCccCccccccccCCCCceecCCCCCcCCCCCCcccCCCCeeec
Q 019447 260 TCCCGSSILGICLSWKCCGFSSAVCCSDHRYCCPSNYPICDSVRHQCLT 308 (341)
Q Consensus 260 tcc~~~~~~~~~~~~~ccp~~~a~cc~d~~hccp~~~~~c~~~~~~c~~ 308 (341)
|||.+.+ +.||||||++||||+|+.||||+|| +||++.++|+|
T Consensus 1 TCC~~~~-----g~~~CCP~~~avCC~D~~hCCP~G~-~C~~~~~~C~k 43 (43)
T PF00396_consen 1 TCCKTPS-----GGYGCCPYPNAVCCSDGKHCCPHGY-TCDPDGGSCIK 43 (43)
T ss_dssp EEEE-TT-----SSEEEEETSSSTTSSTTTTSSSTTS-EEECTTTEEES
T ss_pred CCcccCC-----CCccccCCCCCCccCCCCccCCCcC-EECCCCCEEcC
Confidence 8999999 7899999999999999999999998 99999999986
No 22
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.60 E-value=3e-14 Score=141.91 Aligned_cols=179 Identities=25% Similarity=0.385 Sum_probs=105.4
Q ss_pred CCccCCCCcCCCCCchHHHHHHHHHHHHHHHHcC-CCcccCHHHHHh----------------hCCC-----------CC
Q 019447 26 IQFRNKSSCLYLLGACWAFSATGAIEGINKIVTG-SLVSLSEQELID----------------CDRS-----------YN 77 (341)
Q Consensus 26 tpVkdQg~c~~~~GsCWAfA~~~alE~~~~i~~~-~~~~LSeq~l~d----------------c~~~-----------~~ 77 (341)
.||.||..- |.||.||+...|+..+.++.+ +.++||+.+|+. .... ..
T Consensus 56 ~~vtnQk~S----GRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~ 131 (438)
T PF03051_consen 56 GPVTNQKSS----GRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKN 131 (438)
T ss_dssp -S--B--BS----STHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHS
T ss_pred CCCCCCCCC----CCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhc
Confidence 499999998 999999999999999887765 779999998752 2110 02
Q ss_pred CCCCCCcHHHHHHHHHHhCCcccCCcccCCCCC---------------------------Cc------------------
Q 019447 78 SGCGGGLMDYAYQFVIKNHGIDTEKDYPYRGQA---------------------------GQ------------------ 112 (341)
Q Consensus 78 ~gC~GG~~~~a~~~l~~~~Gi~~E~~yPY~~~~---------------------------~~------------------ 112 (341)
...+||.-..+...+. ++||++.+.||-.... +.
T Consensus 132 ~~~DGGqw~~~~nli~-KYGvVPk~~mpet~~s~~t~~~n~~l~~~Lr~~a~~LR~~~~~~~~~~~l~~~k~~~l~~iy~ 210 (438)
T PF03051_consen 132 PVSDGGQWDMVVNLIK-KYGVVPKSVMPETFSSSNTSEMNEMLNTKLREYALELRKLVKAGKSEEELRKLKEEMLAEIYR 210 (438)
T ss_dssp TT-S-B-HHHHHHHHH-HH---BGGGSTTGCGCHBHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHH-HcCcCcHhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3467998888888775 4699999999854210 00
Q ss_pred --------cccc------ccCCcee-----------------eece---------------------------------e
Q 019447 113 --------CNKQ------KLNRHIV-----------------TIDG---------------------------------Y 128 (341)
Q Consensus 113 --------C~~~------~~~~~~~-----------------~i~~---------------------------------y 128 (341)
.+.. .+..+.. ..+. |
T Consensus 211 il~~~lG~PP~~F~~ey~dkd~~~~~~~~~TP~eF~~kyv~~~~ddyVsLin~P~~~~py~~~y~ve~~~Nv~~g~~~~y 290 (438)
T PF03051_consen 211 ILAIYLGEPPEKFTWEYRDKDKKYHRGKNYTPLEFYKKYVGFDLDDYVSLINDPRSHHPYNKLYTVEYLGNVVGGRPVRY 290 (438)
T ss_dssp HHHHHH---SSSEEEEEE-TTS-EEEEEEE-HHHHHHHCTTS-GGGEEEEE--T-TTS-TTCEEEETTTTSSTT-EEEEE
T ss_pred HHHHHcCCCChheeEEEeccccccccccccCchhHHHHHhCCCCcceEEEeeCCCccCccceeEEEccCCCEECCcceeE
Confidence 0000 0000000 0111 1
Q ss_pred EecCCChHHHHHH----HHHhC-CcEEEEecccccccccCCceEeCCC----------------------CCCCCceEEE
Q 019447 129 KDVPENNEKQLLQ----AVVAQ-PVSVGICGSERAFQLYSSGIFTGPC----------------------STSLDHAVLI 181 (341)
Q Consensus 129 ~~i~~~~~~~ik~----al~~G-PV~v~i~~~~~~f~~y~~GIy~~~~----------------------~~~~~HaV~I 181 (341)
..+ ..+.|++ +|.+| ||..+-++. . +..-+.||.+... .+..+|||+|
T Consensus 291 lNv---pid~lk~~~i~~Lk~G~~VwfgcDV~-k-~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~i 365 (438)
T PF03051_consen 291 LNV---PIDELKDAAIKSLKAGYPVWFGCDVG-K-FFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVI 365 (438)
T ss_dssp EE-----HHHHHHHHHHHHHTT--EEEEEETT-T-TEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEE
T ss_pred ecc---CHHHHHHHHHHHHHcCCcEEEeccCC-c-cccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEE
Confidence 122 2344444 56667 999999996 4 4466788885321 0224899999
Q ss_pred EEeee-cCCe-eEEEEEcCCCCCCCCCcEEEEEcc
Q 019447 182 VGYDS-ENGV-DYWIIKNSWGRSWGMNGYMHMQRN 214 (341)
Q Consensus 182 VGyg~-~~g~-~yWiVkNSWG~~WGe~GY~~i~r~ 214 (341)
||.+- ++|+ .+|+|+||||+..|.+||+.|+..
T Consensus 366 tGv~~D~~g~p~~wkVeNSWG~~~g~kGy~~msd~ 400 (438)
T PF03051_consen 366 TGVDLDEDGKPVRWKVENSWGTDNGDKGYFYMSDD 400 (438)
T ss_dssp EEEEE-TTSSEEEEEEE-SBTTTSTBTTEEEEEHH
T ss_pred EEEEeccCCCeeEEEEEcCCCCCCCCCcEEEECHH
Confidence 99997 4565 699999999999999999999874
No 23
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=98.40 E-value=1.6e-06 Score=82.49 Aligned_cols=76 Identities=26% Similarity=0.464 Sum_probs=51.9
Q ss_pred HHHHHHH----HHhC-CcEEEEecccccccccCCceEeCC-----C----------------CCC-CCceEEEEEeeec-
Q 019447 136 EKQLLQA----VVAQ-PVSVGICGSERAFQLYSSGIFTGP-----C----------------STS-LDHAVLIVGYDSE- 187 (341)
Q Consensus 136 ~~~ik~a----l~~G-PV~v~i~~~~~~f~~y~~GIy~~~-----~----------------~~~-~~HaV~IVGyg~~- 187 (341)
.+.+|++ |..| +|-.+-++. -+..-+.||.+.. . +++ ..|||+|.|.+-+
T Consensus 297 me~lkkl~~~q~qagetVwFG~dvg--q~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~ 374 (444)
T COG3579 297 MERLKKLAIKQMQAGETVWFGCDVG--QLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDE 374 (444)
T ss_pred HHHHHHHHHHHHhcCCcEEeecCch--hhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhcccccc
Confidence 4455553 3446 888887774 4555556655311 0 011 2699999999965
Q ss_pred CC-eeEEEEEcCCCCCCCCCcEEEEEc
Q 019447 188 NG-VDYWIIKNSWGRSWGMNGYMHMQR 213 (341)
Q Consensus 188 ~g-~~yWiVkNSWG~~WGe~GY~~i~r 213 (341)
+| .--|.|.||||..=|.+|||-++-
T Consensus 375 ~g~p~rwkVENSWG~d~G~~GyfvaSd 401 (444)
T COG3579 375 TGNPLRWKVENSWGKDVGKKGYFVASD 401 (444)
T ss_pred CCCceeeEeecccccccCCCceEeehH
Confidence 33 346999999999999999998864
No 24
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=97.55 E-value=0.00091 Score=55.29 Aligned_cols=117 Identities=22% Similarity=0.319 Sum_probs=58.8
Q ss_pred CchHHHHHHHHHHHHHHHHcCCCcccCHHHHHhhCCCCC-------------CCCCCCcHHHHHHHHHHhCCcccCCccc
Q 019447 39 GACWAFSATGAIEGINKIVTGSLVSLSEQELIDCDRSYN-------------SGCGGGLMDYAYQFVIKNHGIDTEKDYP 105 (341)
Q Consensus 39 GsCWAfA~~~alE~~~~i~~~~~~~LSeq~l~dc~~~~~-------------~gC~GG~~~~a~~~l~~~~Gi~~E~~yP 105 (341)
..|+..|++.+++.. |. .+++.+|.+-..... ..-..|.....+..+.+.+|.
T Consensus 14 ~~Cg~as~~mvl~~~-----g~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 79 (144)
T PF13529_consen 14 YGCGPASAAMVLNYY-----GK--NISQEDLADEAGTNPDGDPNTGFVGNPYYDSGYGTSPDDLARYLEKYGY------- 79 (144)
T ss_dssp T-HHHHHHHHHHHHT-----T------HHHHHHHS-EE-E--TTTSEEB-SSTS-B----HHHHHHHHHHH-T-------
T ss_pred CcCHHHHHHHHHHHc-----CC--CCCHHHHHHHhhhccCCCCCcccccCccccCCCccccHHHHHHHHHcCc-------
Confidence 679999988888865 22 688888877554211 011123333344333333232
Q ss_pred CCCCCCcccccccCCceeeeceeEecCCChHHHHHHHHHhC-CcEEEEecccccccccCCceEeCCCCCCCCceEEEEEe
Q 019447 106 YRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGY 184 (341)
Q Consensus 106 Y~~~~~~C~~~~~~~~~~~i~~y~~i~~~~~~~ik~al~~G-PV~v~i~~~~~~f~~y~~GIy~~~~~~~~~HaV~IVGy 184 (341)
........+.+.|++.|.+| ||.+.+....... ....+. ....+|.|+|+||
T Consensus 80 ---------------------~~~~~~~~~~~~i~~~i~~G~Pvi~~~~~~~~~~---~~~~~~---~~~~~H~vvi~Gy 132 (144)
T PF13529_consen 80 ---------------------KATDTSDASFDDIKQEIDAGRPVIVSVNSGWRPP---NGDGYD---GTYGGHYVVIIGY 132 (144)
T ss_dssp ---------------------TEEE-TTS-HHHHHHHHHTT--EEEEEETTSS-----TTEEEE---E-TTEEEEEEEEE
T ss_pred ---------------------ceeeccCCcHHHHHHHHHCCCcEEEEEEcccccC---CCCCcC---CCcCCEEEEEEEE
Confidence 01112233568899999987 9999997431111 112221 2346899999999
Q ss_pred eecCCeeEEEEEcCC
Q 019447 185 DSENGVDYWIIKNSW 199 (341)
Q Consensus 185 g~~~g~~yWiVkNSW 199 (341)
+++. +++|..+|
T Consensus 133 ~~~~---~~~v~DP~ 144 (144)
T PF13529_consen 133 DEDG---YVYVNDPW 144 (144)
T ss_dssp -SSE----EEEE-TT
T ss_pred eCCC---EEEEeCCC
Confidence 9963 78888777
No 25
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=96.30 E-value=0.005 Score=59.07 Aligned_cols=76 Identities=24% Similarity=0.274 Sum_probs=52.6
Q ss_pred CCccCCCCcCCCCCchHHHHHHHHHHHHHHHH-cCCCcccCHHHHHhhCC-------------------C----------
Q 019447 26 IQFRNKSSCLYLLGACWAFSATGAIEGINKIV-TGSLVSLSEQELIDCDR-------------------S---------- 75 (341)
Q Consensus 26 tpVkdQg~c~~~~GsCWAfA~~~alE~~~~i~-~~~~~~LSeq~l~dc~~-------------------~---------- 75 (341)
+||.||.+- |-||.|+.+..+---+.++ +-..+.||..+|+--++ .
T Consensus 63 ~pvtnqkss----GrcWift~ln~lrl~~~~kLnl~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll 138 (457)
T KOG4128|consen 63 QPVTNQKSS----GRCWIFTGLNLLRLEMDRKLNLPEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLL 138 (457)
T ss_pred cccccCcCC----CceEEEechhHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHH
Confidence 599999998 9999999999886544443 33457889887743221 0
Q ss_pred CCCCCCCCcHHHHHHHHHHhCCcccCCcccC
Q 019447 76 YNSGCGGGLMDYAYQFVIKNHGIDTEKDYPY 106 (341)
Q Consensus 76 ~~~gC~GG~~~~a~~~l~~~~Gi~~E~~yPY 106 (341)
.+.--+||.-.--+..+ +++|+...++|+-
T Consensus 139 ~nP~~DGGqw~MfvNlV-kKYGviPKkcy~~ 168 (457)
T KOG4128|consen 139 KNPVPDGGQWQMFVNLV-KKYGVIPKKCYLH 168 (457)
T ss_pred hCCCCCCchHHHHHHHH-HHhCCCcHHhccc
Confidence 12333578776666666 4569998888863
No 26
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=96.17 E-value=0.036 Score=48.76 Aligned_cols=119 Identities=14% Similarity=0.240 Sum_probs=66.0
Q ss_pred cCCCCcCCCCCchHHHHHHHHHHHHHH--------HHcCCCcccCHHHHHhhCCCCCCCCCCCcHHHHHHHHHHhCCccc
Q 019447 29 RNKSSCLYLLGACWAFSATGAIEGINK--------IVTGSLVSLSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHGIDT 100 (341)
Q Consensus 29 kdQg~c~~~~GsCWAfA~~~alE~~~~--------i~~~~~~~LSeq~l~dc~~~~~~gC~GG~~~~a~~~l~~~~Gi~~ 100 (341)
..||.- +-|-+||.++.|-.... +.+.-...+|+++|.+++. .+...++|... .|...
T Consensus 17 EtQg~~----pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~~---------~~~~~i~y~ks-~g~~~ 82 (175)
T PF05543_consen 17 ETQGYN----PWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTSL---------TPNQMIKYAKS-QGRNP 82 (175)
T ss_dssp ---SSS----S-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH--B----------HHHHHHHHHH-TTEEE
T ss_pred eccCcC----cHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcCC---------CHHHHHHHHHH-cCcch
Confidence 467888 99999999998876421 1111234566666655432 35577777633 35321
Q ss_pred CCcccCCCCCCcccccccCCceeeeceeEecCCChHHHHHHHHHh-CCcEEEEecccccccccCCceEeCCCCCCCCceE
Q 019447 101 EKDYPYRGQAGQCNKQKLNRHIVTIDGYKDVPENNEKQLLQAVVA-QPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAV 179 (341)
Q Consensus 101 E~~yPY~~~~~~C~~~~~~~~~~~i~~y~~i~~~~~~~ik~al~~-GPV~v~i~~~~~~f~~y~~GIy~~~~~~~~~HaV 179 (341)
. . ....+ +.+++++.+.+ .|+.+....... ..+...+|||
T Consensus 83 ~---------------~----------~n~~~--s~~eV~~~~~~nk~i~i~~~~v~~------------~~~~~~gHAl 123 (175)
T PF05543_consen 83 Q---------------Y----------NNRMP--SFDEVKKLIDNNKGIAILADRVEQ------------TNGPHAGHAL 123 (175)
T ss_dssp E---------------E----------ECS-----HHHHHHHHHTT-EEEEEEEETTS------------CTTB--EEEE
T ss_pred h---------------H----------hcCCC--CHHHHHHHHHcCCCeEEEeccccc------------CCCCccceeE
Confidence 0 0 00011 35778888886 588776654311 1234568999
Q ss_pred EEEEeee-cCCeeEEEEEcCCC
Q 019447 180 LIVGYDS-ENGVDYWIIKNSWG 200 (341)
Q Consensus 180 ~IVGyg~-~~g~~yWiVkNSWG 200 (341)
+||||-. .+|.++.++-|=|-
T Consensus 124 avvGya~~~~g~~~y~~WNPW~ 145 (175)
T PF05543_consen 124 AVVGYAKPNNGQKTYYFWNPWW 145 (175)
T ss_dssp EEEEEEEETTSEEEEEEE-TT-
T ss_pred EEEeeeecCCCCeEEEEeCCcc
Confidence 9999987 46789999999884
No 27
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=91.21 E-value=0.54 Score=44.77 Aligned_cols=66 Identities=20% Similarity=0.277 Sum_probs=42.4
Q ss_pred HHHHHHHHHhC-CcEEEEecccccccccCCceEeCCCCCCCCceEEEEEeeecCCeeEEEEEcCCCCCCCCCcEEEEEcc
Q 019447 136 EKQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMHMQRN 214 (341)
Q Consensus 136 ~~~ik~al~~G-PV~v~i~~~~~~f~~y~~GIy~~~~~~~~~HaV~IVGyg~~~g~~yWiVkNSWG~~WGe~GY~~i~r~ 214 (341)
.+.|+++|.+| ||.+.++.+ +..|...-|. ....+|.|+|+||++++ ..+.++-+ ....+.++++.
T Consensus 78 ~~~l~~~l~~g~pv~~~~D~~---~lpy~~~~~~---~~~~~H~i~v~G~d~~~-~~~~v~D~------~~~~~~~~~~~ 144 (317)
T PF14399_consen 78 WEELKEALDAGRPVIVWVDMY---YLPYRPNYYK---KHHADHYIVVYGYDEEE-DVFYVSDP------PSYEPGRLPYE 144 (317)
T ss_pred HHHHHHHHhCCCceEEEeccc---cCCCCccccc---cccCCcEEEEEEEeCCC-CEEEEEcC------CCCcceeecHH
Confidence 45788888887 999998875 3344433221 22358999999999864 34566533 23444566653
No 28
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.64 E-value=0.47 Score=42.07 Aligned_cols=52 Identities=23% Similarity=0.390 Sum_probs=37.7
Q ss_pred EecCCChHHHHHHHHHhC-CcEEEEecccccccccCCceEeCCCCCCCCceEEEEEeeecCCeeEEEEEcCCC
Q 019447 129 KDVPENNEKQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWG 200 (341)
Q Consensus 129 ~~i~~~~~~~ik~al~~G-PV~v~i~~~~~~f~~y~~GIy~~~~~~~~~HaV~IVGyg~~~g~~yWiVkNSWG 200 (341)
..+...+..+||.+|.+| ||.+-... |.. ..-|+|+|+|||+. ++..-+.||
T Consensus 116 ~d~tGksl~~ik~ql~kg~PV~iw~T~----~~~------------~s~H~v~itgyDk~----n~yynDpyG 168 (195)
T COG4990 116 VDLTGKSLSDIKGQLLKGRPVVIWVTN----FHS------------YSIHSVLITGYDKY----NIYYNDPYG 168 (195)
T ss_pred ccCcCCcHHHHHHHHhcCCcEEEEEec----ccc------------cceeeeEeeccccc----ceEeccccc
Confidence 446667789999999886 99876644 322 44699999999986 455556664
No 29
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=77.58 E-value=7.3 Score=35.61 Aligned_cols=58 Identities=17% Similarity=0.312 Sum_probs=34.0
Q ss_pred hHHHHHHHHHhC-CcEEEEecccccccc---cCCceE----eC---CCCCCCCceEEEEEeeecCCeeEEEEEc
Q 019447 135 NEKQLLQAVVAQ-PVSVGICGSERAFQL---YSSGIF----TG---PCSTSLDHAVLIVGYDSENGVDYWIIKN 197 (341)
Q Consensus 135 ~~~~ik~al~~G-PV~v~i~~~~~~f~~---y~~GIy----~~---~~~~~~~HaV~IVGyg~~~g~~yWiVkN 197 (341)
..++|.+.|+.| |+++-++.. ... -+.-.+ .. ......+|-|+|+||+...+. +++||
T Consensus 112 s~~ei~~hl~~g~~aIvLVd~~---~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~~~~~--~~yrd 180 (212)
T PF09778_consen 112 SIQEIIEHLSSGGPAIVLVDAS---LLHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDAATKE--FEYRD 180 (212)
T ss_pred cHHHHHHHHhCCCcEEEEEccc---cccChhhcccccccccccccCCCCCccEEEEEEEeecCCCCe--EEEeC
Confidence 367888888875 666666553 211 012111 11 123456999999999987433 66665
No 30
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=77.57 E-value=6 Score=32.49 Aligned_cols=44 Identities=27% Similarity=0.428 Sum_probs=29.7
Q ss_pred HHHHHHhC-CcEEEEecccccccccCCceEeCCCCCCCCceEEEEEeeecCCeeEEEEEcCC
Q 019447 139 LLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSW 199 (341)
Q Consensus 139 ik~al~~G-PV~v~i~~~~~~f~~y~~GIy~~~~~~~~~HaV~IVGyg~~~g~~yWiVkNSW 199 (341)
+++.+.++ ||.+.+... ......+|.|+|+||+.+ +..+|.+.|
T Consensus 70 ~~~~l~~~~Pvi~~~~~~--------------~~~~~~gH~vVv~g~~~~---~~~~i~DP~ 114 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG--------------VSITPSGHAMVVIGYDRK---GNVYVNDPG 114 (141)
T ss_pred HHHHHHCCCeEEEEEecC--------------cccCCCCeEEEEEEEcCC---CCEEEECCC
Confidence 77888876 998887641 012246899999999921 235667765
No 31
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=70.68 E-value=18 Score=34.76 Aligned_cols=27 Identities=22% Similarity=0.486 Sum_probs=23.9
Q ss_pred CCceEEEEEeeecC--CeeEEEEEcCCCC
Q 019447 175 LDHAVLIVGYDSEN--GVDYWIIKNSWGR 201 (341)
Q Consensus 175 ~~HaV~IVGyg~~~--g~~yWiVkNSWG~ 201 (341)
.+||-.|++....+ +.....+||-||.
T Consensus 235 ~~HaY~Vl~~~~~~~~~~~lv~lrNPWg~ 263 (315)
T cd00044 235 KGHAYSVLDVREVQEEGLRLLRLRNPWGV 263 (315)
T ss_pred cCcceEEeEEEEEccCceEEEEecCCccC
Confidence 38999999999876 8899999999993
No 32
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=65.45 E-value=70 Score=27.98 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=27.0
Q ss_pred HHHHHHHHHh-CCcEEEEecccccccccCCceEeCCCCCCCCceEEEEEeeec
Q 019447 136 EKQLLQAVVA-QPVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSE 187 (341)
Q Consensus 136 ~~~ik~al~~-GPV~v~i~~~~~~f~~y~~GIy~~~~~~~~~HaV~IVGyg~~ 187 (341)
.+.+..+|.+ ||+-+++... ......|+++|.|-+.+
T Consensus 98 ~e~~~~LL~~yGPLwv~~~~P---------------~~~~~~H~~ViTGI~~d 135 (166)
T PF12385_consen 98 AEGLANLLREYGPLWVAWEAP---------------GDSWVAHASVITGIDGD 135 (166)
T ss_pred HHHHHHHHHHcCCeEEEecCC---------------CCcceeeEEEEEeecCC
Confidence 5678888886 9999986542 12234799999998765
No 33
>PF14625 Lustrin_cystein: Lustrin, cysteine-rich repeated domain
Probab=53.26 E-value=15 Score=24.54 Aligned_cols=18 Identities=33% Similarity=0.757 Sum_probs=14.3
Q ss_pred CCCCCCCCcccCCCCcee
Q 019447 245 GPTRCSLLTYCAAGETCC 262 (341)
Q Consensus 245 ~ps~c~~~~~c~~~~tcc 262 (341)
.+..|+....||.+.+|=
T Consensus 15 ~~~~C~~~~~CP~~y~C~ 32 (45)
T PF14625_consen 15 QPVSCSPDNSCPSGYSCH 32 (45)
T ss_pred CeeECcCCCCCCCcCEee
Confidence 344798888899999983
No 34
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=38.08 E-value=1.3e+02 Score=26.77 Aligned_cols=51 Identities=31% Similarity=0.487 Sum_probs=30.6
Q ss_pred HHHHHHHHhC-CcEEEEecccccccccCCceEeCCCCCCCCceEEEEEeeecCCeeEEEEEcCCCCCCCCCcEEE
Q 019447 137 KQLLQAVVAQ-PVSVGICGSERAFQLYSSGIFTGPCSTSLDHAVLIVGYDSENGVDYWIIKNSWGRSWGMNGYMH 210 (341)
Q Consensus 137 ~~ik~al~~G-PV~v~i~~~~~~f~~y~~GIy~~~~~~~~~HaV~IVGyg~~~g~~yWiVkNSWG~~WGe~GY~~ 210 (341)
+.|++.|.++ ||.+...... .+||.+|=||..+ +||-+==.||-. .+||++
T Consensus 141 ~~i~~el~~~rPV~~~g~~~~------------------~GHawViDGy~~~---~~~H~NwGW~G~--~nGyy~ 192 (192)
T PF01640_consen 141 DMIRNELDNGRPVLYSGNSKS------------------GGHAWVIDGYDSD---GYFHCNWGWGGS--SNGYYR 192 (192)
T ss_dssp HHHHHHHHTT--EEEEEEETT------------------EEEEEEEEEEESS---SEEEEE-SSTTT--T-EEEE
T ss_pred HHHHHHHHcCCCEEEEEecCC------------------CCeEEEEcCccCC---CeEEEeeCccCC--CCCccC
Confidence 4566667665 9976543210 1899999999654 577665444433 578875
No 35
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=29.62 E-value=88 Score=30.15 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=21.8
Q ss_pred CCceEEEEEeeecCCee--EEEEEcCCC
Q 019447 175 LDHAVLIVGYDSENGVD--YWIIKNSWG 200 (341)
Q Consensus 175 ~~HaV~IVGyg~~~g~~--yWiVkNSWG 200 (341)
.+||=.|++....++.+ ...+||-||
T Consensus 227 ~~HaYsVl~v~~~~~~~~~Ll~lrNPWg 254 (318)
T smart00230 227 KGHAYSVTDVREVQGRRQELLRLRNPWG 254 (318)
T ss_pred cCccEEEEEEEEEecCCeEEEEEECCCC
Confidence 38999999988765555 899999999
No 36
>PF15588 Imm7: Immunity protein 7
Probab=26.79 E-value=2e+02 Score=23.40 Aligned_cols=47 Identities=28% Similarity=0.500 Sum_probs=29.7
Q ss_pred eEEEEEeeec--CCeeEEEEEcCC-----CCCCCCCcEEEEEccCCCCCCceeee
Q 019447 178 AVLIVGYDSE--NGVDYWIIKNSW-----GRSWGMNGYMHMQRNTGNSLGICGIN 225 (341)
Q Consensus 178 aV~IVGyg~~--~g~~yWiVkNSW-----G~~WGe~GY~~i~r~~~~~~~~CgI~ 225 (341)
-|++||++++ +-+.|-|++.+- ...=|.+||. +.+..+.....-||+
T Consensus 17 ~v~~vG~ADd~~~~~~yiilQR~~~~de~D~~~~~d~~~-~e~~~~~~~~Yg~i~ 70 (115)
T PF15588_consen 17 NVLMVGFADDEDGPKEYIILQRSLEFDEQDEDLGSDGYY-TECNDQGYSCYGGIE 70 (115)
T ss_pred cEEEEEEecCCCCCceEEEEEccCCCCCcccccCcCcEE-EEEecCCCceeccEE
Confidence 3999999986 456899999964 4445668886 444333223333444
No 37
>PF07829 Toxin_14: Alpha-A conotoxin PIVA-like protein; InterPro: IPR012498 Alpha-A conotoxin PIVA (P55963 from SWISSPROT) is the major paralytic toxin found in the venom produced by the piscivorous snail Conus purpurascens. This peptide acts by blocking the acetylcholine-binding site of the nicotinic acetylcholine receptor at the neuromuscular junction []. The overall shape of the peptide is described as an "iron" with a highly charged hydrophilic loop of 15S-19R forming the "handle" domain that is exposed to the exterior of the protein. The stability of the conotoxin is primarily governed by three disulphide bonds. A triangular structural motif formed by residues 19R, 12H and 6Y is thought to constitute a "binding core" that is important in binding to the acetylcholine receptor []. ; GO: 0030550 acetylcholine receptor inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1PQR_A 1P1P_A.
Probab=26.11 E-value=30 Score=20.32 Aligned_cols=10 Identities=40% Similarity=1.354 Sum_probs=5.8
Q ss_pred ccc-CCCCcee
Q 019447 275 KCC-GFSSAVC 284 (341)
Q Consensus 275 ~cc-p~~~a~c 284 (341)
||| |+|||.|
T Consensus 1 gccg~ypnaac 11 (26)
T PF07829_consen 1 GCCGPYPNAAC 11 (26)
T ss_dssp --STTSSSSS-
T ss_pred CCccCCCCccc
Confidence 455 5999988
No 38
>cd00206 snake_toxin Snake toxin domain, present in short and long neurotoxins, cytotoxins and short toxins, and in other miscellaneous venom peptides. The toxin acts by binding to the nicotinic acetylcholine receptors in the postsynaptic membrane of skeletal muscles and preventing the binding of acetylcholine, thereby blocking the excitation of muscles. This domain contains 60-75 amino acids that are fixed by 4-5 disulfide bridges and is nearly all beta sheet; it exists as either monomers or dimers.
Probab=25.91 E-value=70 Score=23.19 Aligned_cols=47 Identities=21% Similarity=0.518 Sum_probs=29.1
Q ss_pred CCCCcccCCCCceeecc--C--ccCccccccc---cCCCCceecCCCCCcCCCCCCccc
Q 019447 249 CSLLTYCAAGETCCCGS--S--ILGICLSWKC---CGFSSAVCCSDHRYCCPSNYPICD 300 (341)
Q Consensus 249 c~~~~~c~~~~tcc~~~--~--~~~~~~~~~c---cp~~~a~cc~d~~hccp~~~~~c~ 300 (341)
|.....||+|++-|=.. . ..|+=..+|| ||-++.- ...+||..+. ||
T Consensus 11 ~~~~~tC~~ge~~Cyk~~~~~~~~g~~i~rGCa~tCP~~~~~---~~v~CC~TD~--CN 64 (64)
T cd00206 11 PFTTETCPDGENICYKKSWKDTPRGVRIERGCAATCPKVKPG---EYVTCCTTDK--CN 64 (64)
T ss_pred CCcceeCCcccCccceeEEEcCCCCCEEEccccCcCcCCCCC---cceEecCCCC--CC
Confidence 44567799988887433 1 2233467888 7866543 4567777763 54
Done!