Query 019448
Match_columns 341
No_of_seqs 141 out of 1632
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 09:33:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019448.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019448hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00247 adenosine kinase; Pro 100.0 9E-54 1.9E-58 392.1 37.2 340 2-341 3-343 (345)
2 KOG2854 Possible pfkB family c 100.0 1.1E-52 2.3E-57 359.2 30.9 339 3-341 5-343 (343)
3 PLN02548 adenosine kinase 100.0 4.4E-52 9.6E-57 379.4 34.3 332 10-341 1-332 (332)
4 PLN02813 pfkB-type carbohydrat 100.0 1.6E-48 3.5E-53 363.3 31.4 312 4-334 69-393 (426)
5 PRK15074 inosine/guanosine kin 100.0 3.1E-48 6.7E-53 358.9 32.7 315 3-335 32-417 (434)
6 PLN02379 pfkB-type carbohydrat 100.0 9.4E-48 2E-52 352.8 33.1 313 4-335 19-344 (367)
7 cd01168 adenosine_kinase Adeno 100.0 3.9E-47 8.5E-52 344.0 33.4 310 5-335 2-312 (312)
8 PRK11142 ribokinase; Provision 100.0 1.4E-46 3.1E-51 339.5 23.1 292 5-339 3-298 (306)
9 cd01174 ribokinase Ribokinase 100.0 1.4E-45 3E-50 331.0 26.4 285 6-333 1-287 (292)
10 PTZ00292 ribokinase; Provision 100.0 5.8E-46 1.3E-50 338.3 23.4 300 3-340 14-320 (326)
11 PLN02341 pfkB-type carbohydrat 100.0 1.3E-43 2.9E-48 334.9 29.9 300 3-340 71-403 (470)
12 cd01944 YegV_kinase_like YegV- 100.0 2.1E-43 4.5E-48 316.3 26.7 284 6-331 1-289 (289)
13 PRK09850 pseudouridine kinase; 100.0 1.4E-43 3E-48 320.7 23.9 294 1-338 1-300 (313)
14 cd01945 ribokinase_group_B Rib 100.0 3.1E-43 6.8E-48 314.4 25.4 277 6-333 1-279 (284)
15 PLN02967 kinase 100.0 5E-43 1.1E-47 330.8 27.9 313 4-340 196-541 (581)
16 PLN02323 probable fructokinase 100.0 1.4E-42 3.1E-47 316.4 27.4 294 3-340 9-321 (330)
17 COG0524 RbsK Sugar kinases, ri 100.0 8.8E-43 1.9E-47 315.5 25.1 295 6-339 1-302 (311)
18 TIGR02152 D_ribokin_bact ribok 100.0 1.5E-42 3.2E-47 311.4 25.8 288 11-340 1-292 (293)
19 PRK09434 aminoimidazole ribosi 100.0 3.8E-42 8.3E-47 310.3 28.6 283 5-341 3-304 (304)
20 PF00294 PfkB: pfkB family car 100.0 5E-43 1.1E-47 315.7 21.2 291 4-335 1-297 (301)
21 cd01942 ribokinase_group_A Rib 100.0 3.8E-42 8.2E-47 306.7 26.1 277 6-333 1-279 (279)
22 cd01167 bac_FRK Fructokinases 100.0 9.2E-42 2E-46 306.6 28.0 278 6-332 1-294 (295)
23 PRK09954 putative kinase; Prov 100.0 4.5E-42 9.7E-47 316.6 25.5 290 4-337 57-350 (362)
24 cd01166 KdgK 2-keto-3-deoxyglu 100.0 1.1E-41 2.4E-46 306.0 27.4 283 6-332 1-293 (294)
25 cd01172 RfaE_like RfaE encodes 100.0 2.3E-42 4.9E-47 311.9 22.8 295 6-337 1-299 (304)
26 cd01940 Fructoselysine_kinase_ 100.0 1.8E-41 3.9E-46 299.9 26.2 261 6-332 1-263 (264)
27 cd01947 Guanosine_kinase_like 100.0 1.8E-41 3.9E-46 300.0 25.7 263 6-332 1-264 (265)
28 TIGR03828 pfkB 1-phosphofructo 100.0 9.1E-42 2E-46 307.9 24.2 289 8-340 3-295 (304)
29 cd01939 Ketohexokinase Ketohex 100.0 1.8E-41 3.9E-46 303.9 25.5 278 6-332 1-289 (290)
30 PLN02543 pfkB-type carbohydrat 100.0 1.2E-41 2.6E-46 318.8 25.0 312 4-340 125-483 (496)
31 TIGR02198 rfaE_dom_I rfaE bifu 100.0 9.5E-42 2.1E-46 309.3 23.7 299 2-340 5-310 (315)
32 cd01943 MAK32 MAK32 kinase. M 100.0 1.8E-41 3.9E-46 307.8 23.3 288 6-332 1-304 (328)
33 PRK10294 6-phosphofructokinase 100.0 1.6E-40 3.5E-45 300.2 24.1 295 1-339 1-299 (309)
34 cd01941 YeiC_kinase_like YeiC- 100.0 2.6E-40 5.6E-45 296.2 24.5 283 6-329 1-288 (288)
35 KOG2855 Ribokinase [Carbohydra 100.0 1.8E-40 3.9E-45 288.1 22.2 298 2-340 7-320 (330)
36 PRK09513 fruK 1-phosphofructok 100.0 3.8E-40 8.2E-45 298.2 25.3 295 1-340 1-299 (312)
37 cd01164 FruK_PfkB_like 1-phosp 100.0 6.1E-40 1.3E-44 293.9 25.2 281 7-332 3-288 (289)
38 PRK09813 fructoselysine 6-kina 100.0 7.6E-40 1.6E-44 288.7 23.9 258 5-332 1-259 (260)
39 PRK13508 tagatose-6-phosphate 100.0 7.6E-40 1.7E-44 295.8 24.3 288 6-336 2-293 (309)
40 TIGR03168 1-PFK hexose kinase, 100.0 8.2E-40 1.8E-44 295.0 24.4 289 8-340 3-295 (303)
41 TIGR01231 lacC tagatose-6-phos 100.0 5.3E-39 1.2E-43 290.3 24.6 289 7-337 2-294 (309)
42 COG1105 FruK Fructose-1-phosph 100.0 3E-38 6.4E-43 274.5 23.5 288 7-339 3-296 (310)
43 PRK11316 bifunctional heptose 100.0 4.8E-38 1.1E-42 299.7 22.0 297 3-339 9-307 (473)
44 cd01946 ribokinase_group_C Rib 100.0 2.5E-36 5.4E-41 268.8 25.0 266 6-332 1-275 (277)
45 cd01937 ribokinase_group_D Rib 100.0 2.3E-35 5E-40 259.4 24.6 251 6-328 1-254 (254)
46 PLN02630 pfkB-type carbohydrat 100.0 1.9E-35 4.2E-40 267.0 24.2 254 3-332 10-277 (335)
47 COG2870 RfaE ADP-heptose synth 100.0 4.2E-35 9.1E-40 256.4 17.8 296 4-339 10-306 (467)
48 KOG2947 Carbohydrate kinase [C 100.0 1.6E-33 3.4E-38 230.2 19.6 290 1-332 1-298 (308)
49 cd00287 ribokinase_pfkB_like r 100.0 5.3E-29 1.1E-33 210.2 17.5 195 6-307 1-196 (196)
50 cd01173 pyridoxal_pyridoxamine 99.8 2.9E-19 6.3E-24 157.0 14.9 165 156-329 71-251 (254)
51 PRK12412 pyridoxal kinase; Rev 99.8 2.5E-18 5.4E-23 151.9 17.1 160 158-329 73-246 (268)
52 TIGR00687 pyridox_kin pyridoxa 99.8 1.4E-18 3.1E-23 155.1 14.4 163 155-327 72-254 (286)
53 TIGR00097 HMP-P_kinase phospho 99.8 4.7E-18 1E-22 149.1 16.9 160 158-329 68-240 (254)
54 PRK05756 pyridoxamine kinase; 99.8 3E-18 6.5E-23 153.0 14.5 165 155-329 72-255 (286)
55 PRK06427 bifunctional hydroxy- 99.8 1E-17 2.2E-22 148.1 17.0 161 157-329 73-248 (266)
56 PRK12413 phosphomethylpyrimidi 99.8 7.4E-18 1.6E-22 147.9 15.9 163 156-330 67-243 (253)
57 cd01169 HMPP_kinase 4-amino-5- 99.8 1.8E-17 3.9E-22 144.6 17.1 160 157-328 68-240 (242)
58 PRK07105 pyridoxamine kinase; 99.8 1.1E-17 2.4E-22 149.2 14.2 163 157-332 75-258 (284)
59 PRK08176 pdxK pyridoxal-pyrido 99.8 2.2E-17 4.7E-22 146.8 14.7 165 155-329 86-266 (281)
60 PRK08573 phosphomethylpyrimidi 99.7 4.2E-17 9.1E-22 153.8 15.5 150 171-329 82-244 (448)
61 PRK12616 pyridoxal kinase; Rev 99.7 1.4E-16 3.1E-21 140.8 16.6 161 157-329 74-249 (270)
62 KOG3009 Predicted carbohydrate 99.7 9.6E-16 2.1E-20 136.8 12.4 243 7-328 343-599 (614)
63 PLN02898 HMP-P kinase/thiamin- 99.6 3.9E-14 8.5E-19 135.9 16.4 161 158-330 79-254 (502)
64 PTZ00344 pyridoxal kinase; Pro 99.6 7.6E-14 1.6E-18 125.1 16.0 157 160-329 79-258 (296)
65 PTZ00347 phosphomethylpyrimidi 99.6 9.9E-14 2.1E-18 133.2 16.8 163 154-329 294-478 (504)
66 PF08543 Phos_pyr_kin: Phospho 99.6 1E-13 2.2E-18 120.9 14.4 160 157-328 60-233 (246)
67 cd01171 YXKO-related B.subtili 99.6 1.1E-13 2.3E-18 121.6 14.6 161 154-330 74-236 (254)
68 COG0351 ThiD Hydroxymethylpyri 99.5 5.2E-13 1.1E-17 114.1 14.9 149 171-328 83-244 (263)
69 PRK09517 multifunctional thiam 99.5 4.1E-13 8.8E-18 134.2 14.3 160 158-329 311-484 (755)
70 cd01170 THZ_kinase 4-methyl-5- 99.5 1.4E-12 3E-17 113.1 15.2 167 151-328 43-221 (242)
71 PRK14713 multifunctional hydro 99.5 1.1E-12 2.5E-17 126.4 15.4 158 158-327 99-270 (530)
72 PLN02978 pyridoxal kinase 99.5 1.6E-12 3.5E-17 116.8 15.0 162 158-329 87-267 (308)
73 TIGR00196 yjeF_cterm yjeF C-te 99.4 2E-11 4.3E-16 108.2 17.6 161 153-330 88-251 (272)
74 COG2240 PdxK Pyridoxal/pyridox 99.3 2.9E-11 6.2E-16 104.0 12.9 165 153-328 69-249 (281)
75 PTZ00493 phosphomethylpyrimidi 99.2 1.1E-09 2.5E-14 97.6 14.9 160 158-329 74-285 (321)
76 PRK09355 hydroxyethylthiazole 99.1 7.3E-09 1.6E-13 91.1 15.5 162 153-327 50-224 (263)
77 TIGR00694 thiM hydroxyethylthi 98.9 2.8E-08 6.1E-13 86.7 14.6 163 153-327 45-219 (249)
78 KOG2599 Pyridoxal/pyridoxine/p 98.7 2.2E-07 4.7E-12 78.7 11.3 162 155-327 79-261 (308)
79 PRK14039 ADP-dependent glucoki 98.6 1.8E-05 4E-10 73.4 22.4 218 6-231 2-297 (453)
80 PRK03979 ADP-specific phosphof 98.5 3.2E-05 6.8E-10 72.1 21.8 76 156-231 221-309 (463)
81 KOG2598 Phosphomethylpyrimidin 98.3 8.8E-06 1.9E-10 73.5 12.1 149 171-328 103-282 (523)
82 TIGR02045 P_fruct_ADP ADP-spec 98.3 0.00025 5.4E-09 65.9 21.3 76 156-231 208-295 (446)
83 PF04587 ADP_PFK_GK: ADP-speci 98.2 2.6E-05 5.6E-10 73.5 13.1 77 155-231 207-295 (444)
84 PRK14038 ADP-dependent glucoki 97.8 0.006 1.3E-07 57.0 20.1 79 153-232 220-304 (453)
85 PF02110 HK: Hydroxyethylthiaz 97.8 0.0017 3.7E-08 56.0 15.1 159 152-321 44-213 (246)
86 KOG3974 Predicted sugar kinase 97.7 0.00096 2.1E-08 56.7 12.8 167 153-332 97-270 (306)
87 PF01256 Carb_kinase: Carbohyd 97.7 0.00063 1.4E-08 58.9 12.2 153 153-322 63-215 (242)
88 PRK10565 putative carbohydrate 97.7 0.0015 3.3E-08 62.9 15.7 150 154-321 317-467 (508)
89 COG2145 ThiM Hydroxyethylthiaz 97.5 0.0049 1.1E-07 52.7 14.3 156 153-319 51-218 (265)
90 cd01938 ADPGK_ADPPFK ADP-depen 96.4 0.043 9.3E-07 51.7 11.4 190 30-231 74-289 (445)
91 COG0063 Predicted sugar kinase 95.9 0.31 6.8E-06 43.2 13.6 138 155-309 99-239 (284)
92 COG4809 Archaeal ADP-dependent 94.2 2.6 5.6E-05 38.6 14.2 79 153-231 221-311 (466)
93 KOG4184 Predicted sugar kinase 88.0 3.8 8.3E-05 37.0 8.6 184 36-229 117-318 (478)
94 PRK10076 pyruvate formate lyas 86.4 3.5 7.6E-05 35.0 7.4 68 157-228 38-110 (213)
95 KOG3040 Predicted sugar phosph 78.2 5.9 0.00013 33.2 5.3 114 65-188 26-140 (262)
96 TIGR01768 GGGP-family geranylg 77.8 6.5 0.00014 33.6 5.8 51 156-217 26-76 (223)
97 PRK04169 geranylgeranylglycery 73.0 11 0.00023 32.5 5.9 52 155-217 30-81 (232)
98 COG1180 PflA Pyruvate-formate 72.7 36 0.00079 29.8 9.4 81 157-244 83-168 (260)
99 TIGR00696 wecB_tagA_cpsF bacte 71.9 27 0.00059 28.6 7.9 46 172-217 34-79 (177)
100 PF03808 Glyco_tran_WecB: Glyc 70.3 21 0.00045 29.1 6.9 78 172-264 34-111 (172)
101 COG1618 Predicted nucleotide k 65.9 34 0.00074 27.7 6.9 104 91-194 20-138 (179)
102 COG1922 WecG Teichoic acid bio 64.3 25 0.00055 30.6 6.4 100 150-264 57-171 (253)
103 COG1646 Predicted phosphate-bi 63.0 19 0.0004 30.8 5.2 52 155-217 39-91 (240)
104 cd06533 Glyco_transf_WecG_TagA 61.2 47 0.001 27.0 7.3 46 172-217 32-77 (171)
105 TIGR00334 5S_RNA_mat_M5 ribonu 60.1 75 0.0016 26.0 8.0 85 157-245 22-106 (174)
106 PRK05968 hypothetical protein; 57.0 1.3E+02 0.0027 28.1 10.4 40 155-194 145-185 (389)
107 PF01212 Beta_elim_lyase: Beta 55.8 40 0.00086 30.1 6.5 80 139-219 104-192 (290)
108 PRK05967 cystathionine beta-ly 55.6 1.1E+02 0.0024 28.7 9.6 38 157-194 149-187 (395)
109 PRK06702 O-acetylhomoserine am 55.2 69 0.0015 30.5 8.3 38 157-194 147-185 (432)
110 TIGR01769 GGGP geranylgeranylg 54.6 38 0.00083 28.5 5.8 49 158-217 25-74 (205)
111 COG0036 Rpe Pentose-5-phosphat 53.1 29 0.00063 29.5 4.8 53 156-218 83-137 (220)
112 COG0345 ProC Pyrroline-5-carbo 53.0 1.6E+02 0.0035 25.9 10.0 183 84-322 4-204 (266)
113 PRK06598 aspartate-semialdehyd 51.7 1.3E+02 0.0027 28.0 9.1 113 80-224 3-120 (369)
114 PF09314 DUF1972: Domain of un 51.6 79 0.0017 26.2 7.1 66 157-225 92-166 (185)
115 PRK09028 cystathionine beta-ly 51.3 1.4E+02 0.003 28.0 9.6 39 156-194 145-184 (394)
116 PF00919 UPF0004: Uncharacteri 50.6 53 0.0011 24.0 5.3 60 155-217 34-97 (98)
117 COG1159 Era GTPase [General fu 48.4 1.2E+02 0.0026 27.1 8.0 109 78-188 3-116 (298)
118 PF01884 PcrB: PcrB family; I 47.8 33 0.00072 29.5 4.4 50 156-217 31-80 (230)
119 TIGR02494 PFLE_PFLC glycyl-rad 47.6 87 0.0019 27.8 7.5 56 159-218 127-182 (295)
120 TIGR01745 asd_gamma aspartate- 45.9 1.9E+02 0.004 26.9 9.2 54 154-222 61-117 (366)
121 PHA00438 hypothetical protein 45.3 17 0.00036 25.0 1.8 18 291-308 46-63 (81)
122 COG0373 HemA Glutamyl-tRNA red 44.1 1.6E+02 0.0034 27.9 8.6 117 86-228 183-302 (414)
123 COG0075 Serine-pyruvate aminot 43.7 1.6E+02 0.0035 27.5 8.5 103 61-194 64-169 (383)
124 PRK09722 allulose-6-phosphate 42.7 58 0.0013 28.0 5.2 54 156-218 81-136 (229)
125 PRK06901 aspartate-semialdehyd 42.4 2.7E+02 0.0058 25.4 10.5 90 79-195 4-96 (322)
126 COG0269 SgbH 3-hexulose-6-phos 40.2 2.3E+02 0.0051 24.0 9.3 38 156-196 79-116 (217)
127 KOG0174 20S proteasome, regula 40.1 31 0.00066 28.5 2.8 42 291-332 146-188 (224)
128 PF13986 DUF4224: Domain of un 40.0 50 0.0011 20.4 3.3 30 217-257 2-31 (47)
129 PF02571 CbiJ: Precorrin-6x re 39.0 64 0.0014 28.1 5.0 30 235-270 116-145 (249)
130 TIGR02826 RNR_activ_nrdG3 anae 38.7 1.4E+02 0.0029 23.7 6.4 57 159-222 63-119 (147)
131 PF00070 Pyr_redox: Pyridine n 38.7 98 0.0021 21.1 5.1 36 74-109 18-59 (80)
132 TIGR01325 O_suc_HS_sulf O-succ 38.5 3E+02 0.0065 25.5 9.8 38 157-194 139-177 (380)
133 PF04230 PS_pyruv_trans: Polys 38.0 1.6E+02 0.0034 25.1 7.5 130 87-225 2-140 (286)
134 TIGR02493 PFLA pyruvate format 37.9 1.5E+02 0.0033 25.1 7.2 59 159-219 67-125 (235)
135 PRK08133 O-succinylhomoserine 37.7 3.4E+02 0.0074 25.3 10.2 38 157-194 146-184 (390)
136 PF10911 DUF2717: Protein of u 37.1 26 0.00057 24.1 1.7 20 289-308 44-63 (77)
137 PRK07050 cystathionine beta-ly 36.5 3.6E+02 0.0078 25.2 10.5 38 157-194 150-188 (394)
138 cd02812 PcrB_like PcrB_like pr 35.1 1E+02 0.0022 26.3 5.4 50 156-217 24-75 (219)
139 PRK03692 putative UDP-N-acetyl 35.1 1.4E+02 0.0031 25.9 6.5 65 151-216 55-134 (243)
140 TIGR02491 NrdG anaerobic ribon 35.1 76 0.0017 25.2 4.5 59 159-217 65-127 (154)
141 COG0481 LepA Membrane GTPase L 34.9 1.8E+02 0.004 28.0 7.4 96 75-190 339-436 (603)
142 PF03102 NeuB: NeuB family; I 34.1 1.6E+02 0.0034 25.5 6.6 48 169-222 52-99 (241)
143 PRK13663 hypothetical protein; 33.3 2.1E+02 0.0045 27.0 7.3 117 172-295 12-159 (493)
144 PRK08745 ribulose-phosphate 3- 33.1 89 0.0019 26.7 4.8 53 156-218 84-138 (223)
145 PRK08114 cystathionine beta-ly 32.9 2.4E+02 0.0052 26.5 8.0 52 55-111 79-133 (395)
146 cd02772 MopB_NDH-1_NuoG2 MopB_ 32.9 2.1E+02 0.0045 26.8 7.9 44 153-196 148-192 (414)
147 PRK06728 aspartate-semialdehyd 32.8 4E+02 0.0086 24.6 10.1 94 78-196 5-101 (347)
148 PRK06444 prephenate dehydrogen 32.4 2.1E+02 0.0046 23.9 6.9 26 81-108 3-28 (197)
149 cd02752 MopB_Formate-Dh-Na-lik 32.4 46 0.001 33.5 3.4 45 153-197 165-211 (649)
150 PF01053 Cys_Met_Meta_PP: Cys/ 32.0 1.4E+02 0.0031 27.8 6.4 102 55-194 72-179 (386)
151 PF01113 DapB_N: Dihydrodipico 32.0 2.2E+02 0.0049 21.5 7.3 58 153-217 63-120 (124)
152 COG4803 Predicted membrane pro 32.0 58 0.0012 25.8 3.1 38 287-326 53-93 (170)
153 PF03266 NTPase_1: NTPase; In 31.8 2.8E+02 0.006 22.4 7.8 122 94-219 17-156 (168)
154 PLN02409 serine--glyoxylate am 31.6 4.3E+02 0.0092 24.6 9.7 48 60-111 67-114 (401)
155 COG4588 AcfC Accessory coloniz 30.9 3.3E+02 0.0072 23.0 7.8 66 155-229 18-85 (252)
156 COG2518 Pcm Protein-L-isoaspar 30.9 3.3E+02 0.0072 23.0 10.4 42 59-106 79-120 (209)
157 PF11469 Ribonucleas_3_2: Ribo 30.7 58 0.0013 23.9 2.7 31 289-319 53-84 (120)
158 PRK08005 epimerase; Validated 30.7 1E+02 0.0022 26.1 4.7 52 157-218 81-134 (210)
159 COG2873 MET17 O-acetylhomoseri 30.3 3.1E+02 0.0067 25.6 7.8 106 74-219 97-205 (426)
160 PF02659 DUF204: Domain of unk 30.0 1.2E+02 0.0026 20.1 4.2 24 296-320 4-27 (67)
161 TIGR03128 RuMP_HxlA 3-hexulose 29.8 2.3E+02 0.0049 23.5 6.8 58 156-219 75-133 (206)
162 COG0626 MetC Cystathionine bet 29.2 3.1E+02 0.0067 25.8 8.0 102 54-193 79-186 (396)
163 PRK05939 hypothetical protein; 29.2 4.8E+02 0.01 24.4 9.9 38 157-194 131-169 (397)
164 COG3383 Uncharacterized anaero 28.7 2.1E+02 0.0045 29.4 6.9 47 153-199 416-464 (978)
165 PRK08883 ribulose-phosphate 3- 28.6 1.2E+02 0.0025 25.9 4.8 53 156-218 80-134 (220)
166 PLN02383 aspartate semialdehyd 28.5 4.7E+02 0.01 24.0 11.2 94 78-197 7-103 (344)
167 PF10087 DUF2325: Uncharacteri 28.2 1.6E+02 0.0034 21.2 4.9 39 153-193 44-82 (97)
168 COG1660 Predicted P-loop-conta 27.7 1.9E+02 0.004 25.6 5.8 65 153-221 19-92 (286)
169 COG0136 Asd Aspartate-semialde 27.6 4.8E+02 0.01 23.9 10.5 93 79-193 2-97 (334)
170 PRK15447 putative protease; Pr 27.2 3.5E+02 0.0075 24.3 7.9 72 156-227 27-104 (301)
171 PF04016 DUF364: Domain of unk 27.0 71 0.0015 25.2 3.0 45 151-197 56-100 (147)
172 TIGR01328 met_gam_lyase methio 27.0 5.2E+02 0.011 24.1 9.3 38 157-194 144-182 (391)
173 COG1058 CinA Predicted nucleot 26.9 1.6E+02 0.0035 25.7 5.4 34 66-101 22-55 (255)
174 PF00834 Ribul_P_3_epim: Ribul 26.9 96 0.0021 26.0 3.9 52 157-218 80-133 (201)
175 PRK08091 ribulose-phosphate 3- 26.3 1.5E+02 0.0033 25.5 5.0 53 156-218 90-146 (228)
176 TIGR01125 MiaB-like tRNA modif 26.3 2E+02 0.0042 27.3 6.4 62 155-219 34-96 (430)
177 PRK08248 O-acetylhomoserine am 26.2 4.8E+02 0.01 24.8 9.0 38 157-194 149-187 (431)
178 cd00368 Molybdopterin-Binding 26.1 95 0.0021 28.4 4.2 88 153-244 152-240 (374)
179 PRK13600 putative ribosomal pr 26.1 2.1E+02 0.0046 20.2 5.0 37 156-195 28-64 (84)
180 PF13460 NAD_binding_10: NADH( 25.9 1.3E+02 0.0027 24.1 4.5 90 90-194 8-97 (183)
181 PRK07582 cystathionine gamma-l 25.3 5.4E+02 0.012 23.7 9.5 53 54-111 66-121 (366)
182 PRK04296 thymidine kinase; Pro 25.2 1.2E+02 0.0026 25.0 4.2 60 157-217 78-137 (190)
183 PF02515 CoA_transf_3: CoA-tra 24.8 1.4E+02 0.003 24.6 4.6 29 189-221 1-29 (191)
184 PF02492 cobW: CobW/HypB/UreG, 24.7 61 0.0013 26.4 2.4 69 156-224 83-154 (178)
185 PRK13397 3-deoxy-7-phosphohept 24.5 4.5E+02 0.0098 22.9 7.7 40 172-218 65-104 (250)
186 cd03822 GT1_ecORF704_like This 24.3 3.3E+02 0.0072 24.1 7.4 73 156-228 75-151 (366)
187 PRK08134 O-acetylhomoserine am 23.9 4.2E+02 0.0091 25.2 8.1 38 157-194 149-187 (433)
188 cd02068 radical_SAM_B12_BD B12 23.7 1.8E+02 0.0038 22.0 4.7 65 156-224 38-102 (127)
189 PRK05613 O-acetylhomoserine am 23.6 6.5E+02 0.014 24.0 9.5 37 158-194 156-193 (437)
190 PRK04148 hypothetical protein; 22.9 3.7E+02 0.008 20.9 6.2 37 153-193 73-109 (134)
191 PTZ00445 p36-lilke protein; Pr 22.8 1.5E+02 0.0033 25.2 4.2 26 171-196 27-53 (219)
192 PF10727 Rossmann-like: Rossma 22.6 2E+02 0.0043 22.1 4.7 91 84-197 13-107 (127)
193 PRK12399 tagatose 1,6-diphosph 22.1 4.4E+02 0.0095 24.0 7.3 21 173-193 142-162 (324)
194 PF07505 Gp37_Gp68: Phage prot 22.0 2.1E+02 0.0045 25.2 5.1 43 153-195 184-230 (261)
195 PRK00278 trpC indole-3-glycero 22.0 4.3E+02 0.0093 23.1 7.3 63 153-224 129-192 (260)
196 cd00614 CGS_like CGS_like: Cys 21.9 6.2E+02 0.014 23.2 9.6 38 157-194 125-163 (369)
197 PRK07810 O-succinylhomoserine 21.5 6.8E+02 0.015 23.4 10.2 38 157-194 155-193 (403)
198 PRK07324 transaminase; Validat 21.4 6.4E+02 0.014 23.1 9.6 37 157-193 153-193 (373)
199 TIGR03569 NeuB_NnaB N-acetylne 21.3 2.7E+02 0.0058 25.4 6.0 45 169-220 72-117 (329)
200 PRK07811 cystathionine gamma-s 21.3 5.2E+02 0.011 24.0 8.1 38 157-194 146-184 (388)
201 PRK07812 O-acetylhomoserine am 21.2 4.2E+02 0.0091 25.2 7.6 38 157-194 155-193 (436)
202 COG0547 TrpD Anthranilate phos 21.0 6.6E+02 0.014 23.1 10.5 146 153-328 142-303 (338)
203 PRK13601 putative L7Ae-like ri 20.9 3.1E+02 0.0067 19.3 4.9 36 156-194 23-58 (82)
204 KOG0257 Kynurenine aminotransf 20.8 7.2E+02 0.016 23.5 9.6 50 140-193 159-212 (420)
205 KOG1615 Phosphoserine phosphat 20.6 4.9E+02 0.011 21.9 6.7 99 151-263 9-113 (227)
206 COG2099 CobK Precorrin-6x redu 20.6 3.3E+02 0.0071 23.9 5.9 29 235-270 115-143 (257)
207 COG4607 CeuA ABC-type enteroch 20.6 2.8E+02 0.0061 24.9 5.6 95 155-270 116-211 (320)
208 PRK08249 cystathionine gamma-s 20.5 6E+02 0.013 23.8 8.4 38 157-194 149-187 (398)
209 COG2085 Predicted dinucleotide 20.4 2.1E+02 0.0045 24.3 4.6 72 152-228 55-141 (211)
210 COG2257 Uncharacterized homolo 20.4 1.3E+02 0.0028 21.6 2.9 24 171-194 30-53 (92)
211 cd02766 MopB_3 The MopB_3 CD i 20.4 97 0.0021 30.1 3.1 44 153-196 153-197 (501)
212 COG4868 Uncharacterized protei 20.1 1.6E+02 0.0035 26.7 4.0 47 79-125 108-155 (493)
No 1
>PTZ00247 adenosine kinase; Provisional
Probab=100.00 E-value=9e-54 Score=392.12 Aligned_cols=340 Identities=51% Similarity=0.882 Sum_probs=292.1
Q ss_pred CCCceEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCC-c
Q 019448 2 AQEGILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPG-A 80 (341)
Q Consensus 2 ~~~~~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~-~ 80 (341)
|..++|+|+|++++|++..++++|+.++.+.+|+..+.+..++|..++..........+||++.|+|+++++|..+|. +
T Consensus 3 ~~~~~i~~iG~~~~D~~~~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~lg~~g~~~ 82 (345)
T PTZ00247 3 SAPKKLLGFGNPLLDISAHVSDEFLEKYGLELGSAILAEEKQLPIFEELESIPNVSYVPGGSALNTARVAQWMLQAPKGF 82 (345)
T ss_pred CCCceEEEECCceEEEEEeeCHHHHHHcCCCCCceeechHHHHHHHHHHHhccCceecCCCHHHHHHHHHHHHhcCCCCc
Confidence 557899999999999999999999999989999999999779999999999988999999999999999998655566 9
Q ss_pred EEEEeeeecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhhhhccceE
Q 019448 81 TSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWALVEKAKY 160 (341)
Q Consensus 81 v~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (341)
+.|+|.||+|.+|+.+++.|++.||+++++...+.+|+.+++++++++|+++.+.+++..++++++........+.++++
T Consensus 83 v~~ig~vG~D~~G~~i~~~l~~~GVd~~~~~~~~~~Tg~~~i~v~~~~r~~~~~~ga~~~l~~~~i~~~~~~~~l~~~~~ 162 (345)
T PTZ00247 83 VCYVGCVGDDRFAEILKEAAEKDGVEMLFEYTTKAPTGTCAVLVCGKERSLVANLGAANHLSAEHMQSHAVQEAIKTAQL 162 (345)
T ss_pred EEEEEEeccchhHHHHHHHHHHcCCeeeccccCCCCcEEEEEEEcCCCcccccCcchhhcCChHHcCcHHHHHHHhhCCE
Confidence 99999999999999999999999999988755667899998888778999988888888888888874222346889999
Q ss_pred EEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCCHHHH
Q 019448 161 FYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEI 240 (341)
Q Consensus 161 v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~~~~ 240 (341)
+|++++.+..+.+.+..+++.++++++++++|++.+.+....++.++++++++|++++|++|++.|++...++.++++++
T Consensus 163 v~~~g~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~~~Dil~~N~~Ea~~l~g~~~~~~~~~~~~ 242 (345)
T PTZ00247 163 YYLEGFFLTVSPNNVLQVAKHARESGKLFCLNLSAPFISQFFFERLLQVLPYVDILFGNEEEAKTFAKAMKWDTEDLKEI 242 (345)
T ss_pred EEEEEEEecccHHHHHHHHHHHHHcCCEEEEECCcHHHHHHHHHHHHHHHhhCCEEEeCHHHHHHHhhccCCCccCHHHH
Confidence 99999766667899999999999999999999876655434445588899999999999999999987433334578888
Q ss_pred HHHHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHHHHH
Q 019448 241 ALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGC 320 (341)
Q Consensus 241 ~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~~a~ 320 (341)
++.+.+++.+...+.+.+|||+|++|++++++++.+++|++++++.+++|||||||+|+|||+++|++|+++++|+++|+
T Consensus 243 ~~~l~~~~~~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~v~~~~vVDTtGAGDaF~agfl~~l~~g~~~~~al~~a~ 322 (345)
T PTZ00247 243 AARIAMLPKYSGTRPRLVVFTQGPEPTLIATKDGVTSVPVPPLDQEKIVDTNGAGDAFVGGFLAQYANGKDIDRCVEAGH 322 (345)
T ss_pred HHHHHhccccccCCCCEEEEecCCCceEEEECCEEEEEeccccCCCCccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 88875432111235789999999999999999888888887664346899999999999999999999999999999999
Q ss_pred HHhhhhhhhccccCCCCCCCC
Q 019448 321 YTSHVIIQRSGCTYPEKPEFN 341 (341)
Q Consensus 321 ~~Aa~~v~~~g~~~p~~~~~~ 341 (341)
++|+++|++.|+.+|..++++
T Consensus 323 ~aAa~~v~~~Ga~~~~~~~~~ 343 (345)
T PTZ00247 323 YSAQVIIQHNGCTYPEKPPFL 343 (345)
T ss_pred HHHHHHHhccCCCCCCCCCCC
Confidence 999999999999988887653
No 2
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-52 Score=359.25 Aligned_cols=339 Identities=65% Similarity=1.117 Sum_probs=316.8
Q ss_pred CCceEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEE
Q 019448 3 QEGILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATS 82 (341)
Q Consensus 3 ~~~~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~ 82 (341)
++...+.+|+++||+...+|++||++|||+.|+.++.+.++.+..++.+........+||++.|++++++|+++....+.
T Consensus 5 ~E~il~G~gnpLLD~~a~Vd~~~L~KygL~~n~ail~d~~~~~~~~E~~~~~~~~~~AGGs~qNt~R~aq~~~~~p~~~~ 84 (343)
T KOG2854|consen 5 PEGILVGLGNPLLDISAVVDDEFLDKYGLKLNDAILADDKHLGLFDELMEGFNVKYSAGGSAQNTLRIAQWLLQQPGATV 84 (343)
T ss_pred ccceeeccCccceeeeeccCHHHHHHcCCCCCcceecchhhHHHHHHHhhcccEEecCCchhHHHHHHHHHHccCCCceE
Confidence 35567789999999999999999999999999999999999999999999999999999999999999999887566999
Q ss_pred EEeeeecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhhhhccceEEE
Q 019448 83 YIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFY 162 (341)
Q Consensus 83 ~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 162 (341)
|+|.+|+|.+|+.+++.+++.||+..+...++.+|+.|.+++++.+|+++.+.++.+.++.++++.+++|..++++.++|
T Consensus 85 f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d~~TGtCavli~~~nRSL~anLgAAn~f~~dhl~~~~~~~lveka~v~y 164 (343)
T KOG2854|consen 85 FFGSVGKDKFGELLKSKARAAGVNVHYQVKEDGPTGTCAVLITGDNRSLCANLGAANCFKVDHLDKEENWALVEKAKVFY 164 (343)
T ss_pred EEeeccCchHHHHHHHHHHhcCceEEEEeccCCCCceEEEEEeCCCcchhhccchhhccCHHHhcchhhhhhhhheeEEE
Confidence 99999999999999999999999999999999999999999987779999999999999999999888999999999999
Q ss_pred EeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCCHHHHHH
Q 019448 163 IAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIAL 242 (341)
Q Consensus 163 i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~~~~~~ 242 (341)
+.|+++..+|+.+..+.+.+.+.+.++.++++.+.+...+.+.+.++++++|+++.|++|++.++...++...+..+.+.
T Consensus 165 v~Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~y~DiifgNe~EA~af~~~~~~~t~dv~eia~ 244 (343)
T KOG2854|consen 165 VAGFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLPYADIIFGNEDEAAAFARAHGWETKDVKEIAL 244 (343)
T ss_pred EEEEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcCcceEEEcCHHHHHHHHHhhCCcccchHHHhh
Confidence 99999999999999999999999999999999999989899999999999999999999999999998998888888887
Q ss_pred HHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 019448 243 KLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYT 322 (341)
Q Consensus 243 ~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~~a~~~ 322 (341)
....+.+......+.++||.|.+++....+++.+.+|..+.+..+++||+||||+|++||+++|.+|.++++|++.|+.+
T Consensus 245 ~~~~~~k~~~~~~r~vvit~g~~~~i~~~~~~v~~~~v~~~~~~~ivDtnGAGDaFvgGFl~~l~qg~~l~~cir~g~~a 324 (343)
T KOG2854|consen 245 KLSALPKVNGTRPRTVVITQGPDPVIVAEDGKVTAYPVLPLPVEEIVDTNGAGDAFVGGFLSQLVQGKSLEECIRAGSYA 324 (343)
T ss_pred HhhccccccccccceEEEccCCCceEEecCCceEEeccccccceeeeeCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 77665543446678999999999999998888888888888888999999999999999999999999999999999999
Q ss_pred hhhhhhhccccCCCCCCCC
Q 019448 323 SHVIIQRSGCTYPEKPEFN 341 (341)
Q Consensus 323 Aa~~v~~~g~~~p~~~~~~ 341 (341)
|+.+++..|+.+|+.++|.
T Consensus 325 a~~vi~~~G~~~p~~~~~~ 343 (343)
T KOG2854|consen 325 ASHVIRRVGCTVPEKPDFH 343 (343)
T ss_pred hhheeeccCCCCCCCCCCC
Confidence 9999999999999998873
No 3
>PLN02548 adenosine kinase
Probab=100.00 E-value=4.4e-52 Score=379.35 Aligned_cols=332 Identities=85% Similarity=1.324 Sum_probs=284.2
Q ss_pred EcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEEEeeeec
Q 019448 10 MGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGK 89 (341)
Q Consensus 10 iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i~~vG~ 89 (341)
+|++++|++..++++||.+|++++|+..+.+.+++|.+++..........+||++.|+|.+++++.++|.++.|+|.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~a~~l~~lg~~~~~ig~vG~ 80 (332)
T PLN02548 1 MGNPLLDISAVVDQDFLDKYDVKLNNAILAEEKHLPMYDELASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYMGCIGK 80 (332)
T ss_pred CCCceeEEEEecCHHHHHHcCCCCCceeechHHHHHHHHHHhccCCceecCCcHHHHHHHHHHHHhcCCCcEEEEEEEcC
Confidence 69999999999999999999999999999999999999999999999999999999998888776678899999999999
Q ss_pred CchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhhhhccceEEEEeccccc
Q 019448 90 DKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLT 169 (341)
Q Consensus 90 D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~i~~~~~~ 169 (341)
|.+|+++++.|++.||+++++...+.+|+.+++++++|+|.++.+.++...++++++...+.+..+...+++|++++.+.
T Consensus 81 D~~g~~i~~~L~~~gVd~~~~~~~~~~T~~~~i~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~ 160 (332)
T PLN02548 81 DKFGEEMKKCATAAGVNVHYYEDESTPTGTCAVLVVGGERSLVANLSAANCYKVEHLKKPENWALVEKAKFYYIAGFFLT 160 (332)
T ss_pred ChhHHHHHHHHHHcCCceeeeccCCCCCceEEEEEecCCceeeeccchhhcCCHHHhcChhhHhHHhhCCEEEEEEEEcc
Confidence 99999999999999999998865667798888877788898877766666666666553223456789999999998766
Q ss_pred cCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCCHHHHHHHHhcCCc
Q 019448 170 VSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPK 249 (341)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~~~~~~~l~~~~~ 249 (341)
.+++.+..+++.+++++.++++|++.+.|.....+.++++++++|++++|++|++.+++....+.++.+++++++.++..
T Consensus 161 ~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~~~ 240 (332)
T PLN02548 161 VSPESIMLVAEHAAANNKTFMMNLSAPFICEFFKDQLMEALPYVDFLFGNETEARTFAKVQGWETEDVEEIALKISALPK 240 (332)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEECCChhHHHHhHHHHHHHHhhCCEEEecHHHHHHHhCccCCCcccHHHHHHHHHHhhh
Confidence 77888999999999999999999987776655566688999999999999999999987654444567676666532210
Q ss_pred cccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHHHHHHHhhhhhhh
Q 019448 250 ASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQR 329 (341)
Q Consensus 250 ~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~~a~~~Aa~~v~~ 329 (341)
....+++.+|||+|++|++++++++.+++|++++++++++|||||||+|+|||+++|++|+++++|+++|+++|+++|++
T Consensus 241 ~~g~~~~~vvvT~G~~G~~~~~~~~~~~~pa~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~l~eal~~a~aaAa~~v~~ 320 (332)
T PLN02548 241 ASGTHKRTVVITQGADPTVVAEDGKVKEFPVIPLPKEKLVDTNGAGDAFVGGFLSQLVQGKDIEECVRAGNYAANVIIQR 320 (332)
T ss_pred hccccCCEEEEEeCCCcEEEEECCeEEEeccccCCcCccccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc
Confidence 01225789999999999999998888888876555568999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCC
Q 019448 330 SGCTYPEKPEFN 341 (341)
Q Consensus 330 ~g~~~p~~~~~~ 341 (341)
.|+..|.++.+.
T Consensus 321 ~G~~~~~~~~~~ 332 (332)
T PLN02548 321 SGCTYPEKPDFS 332 (332)
T ss_pred cCCCCCCCccCC
Confidence 999999988763
No 4
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=1.6e-48 Score=363.27 Aligned_cols=312 Identities=19% Similarity=0.283 Sum_probs=262.9
Q ss_pred CceEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCC-----
Q 019448 4 EGILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIP----- 78 (341)
Q Consensus 4 ~~~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg----- 78 (341)
..+|+++|++++|++..++++||.+|++++++..+.+.+..-...+..........+||++.|+|+++++ ||
T Consensus 69 ~~~vl~iG~~~vDi~~~v~~~fl~~~~lp~~~~~~i~~~~~~~l~e~~~~~~~~~~~GG~~~N~Avalar---LG~~~~~ 145 (426)
T PLN02813 69 RWDVLGLGQAMVDFSGMVDDEFLERLGLEKGTRKVINHEERGKVLRALDGCSYKASAGGSLSNTLVALAR---LGSQSAA 145 (426)
T ss_pred cceEEEeCCceeEEEEecCHHHHHHcCCCcCcccccCHHHHHHHHHHhhccCceEecCcHHHHHHHHHHH---hcccccc
Confidence 5689999999999999999999999999999987776655445555666777889999999999999998 45
Q ss_pred ---CcEEEEeeeecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchhhh
Q 019448 79 ---GATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENWAL 154 (341)
Q Consensus 79 ---~~v~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (341)
.+|.|+|.||+|.+|+++++.|++.||++.++...+.+|+.++++++ +|+|+++.+.+++..++++++. ...
T Consensus 146 ~~~~~v~~ig~VG~D~~G~~i~~~L~~~GVd~~~~~~~~~~Tg~~~ilv~~~gertii~~~Ga~~~l~~~~~~----~~~ 221 (426)
T PLN02813 146 GPALNVAMAGSVGSDPLGDFYRTKLRRANVHFLSQPVKDGTTGTVIVLTTPDAQRTMLSYQGTSSTVNYDSCL----ASA 221 (426)
T ss_pred CCCCcEEEEEEeCCChHHHHHHHHHHHcCCcccceecCCCCceEEEEEEcCCCCceeeeccCchhhCCccccC----HHH
Confidence 69999999999999999999999999999988766678999988886 7999999888877777665553 356
Q ss_pred hccceEEEEeccccccC--HHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHH-HhhcCCCcEEecCHHHHHHHhhhcC
Q 019448 155 VEKAKYFYIAGFFLTVS--PDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDAL-EKVLPYMDYIFGNETEARTFSKVQG 231 (341)
Q Consensus 155 l~~~~~v~i~~~~~~~~--~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~-~~~l~~~dvl~~n~~E~~~l~~~~~ 231 (341)
+++++++|++++.+..+ .+.+..+++.++++|+++++|+++......+++.+ ..+++++|++++|++|+..+++..
T Consensus 222 i~~adiv~l~g~~~~~~~~~~~~~~~~~~ak~~g~~v~~d~s~~~~~~~~~~~l~~~ll~~vDil~~Ne~Ea~~l~g~~- 300 (426)
T PLN02813 222 ISKSRVLVVEGYLWELPQTIEAIAQACEEAHRAGALVAVTASDVSCIERHRDDFWDVMGNYADILFANSDEARALCGLG- 300 (426)
T ss_pred HhcCCEEEEEeeecCCCchHHHHHHHHHHHHHcCCEEEEECCCcchhhhhHHHHHHHHHhcCCEEEeCHHHHHHHhCCC-
Confidence 89999999998765443 37788999999999999999988653332233333 455689999999999999998742
Q ss_pred CCCCCHHHHHHHHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCC-
Q 019448 232 WETDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEK- 310 (341)
Q Consensus 232 ~~~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~- 310 (341)
..++++++++.+ . .+++.+|||+|++|++++++++.+++|++++ +++|||||||+|+|||++++++|+
T Consensus 301 -~~~~~~~a~~~L------~-~~~~~VVVT~G~~Ga~~~~~~~~~~~pa~~v---~vVDTtGAGDAF~Agfl~~l~~G~~ 369 (426)
T PLN02813 301 -SEESPESATRYL------S-HFCPLVSVTDGARGSYIGVKGEAVYIPPSPC---VPVDTCGAGDAYAAGILYGLLRGVS 369 (426)
T ss_pred -CCCCHHHHHHHH------H-cCCCEEEEEeCCCCeEEEECCEEEEeCCCCC---CcccCCChHHHHHHHHHHHHHcCCC
Confidence 234677777776 2 4678999999999999999988889988754 899999999999999999999999
Q ss_pred CHHHHHHHHHHHhhhhhhhccccC
Q 019448 311 PIEECVRAGCYTSHVIIQRSGCTY 334 (341)
Q Consensus 311 ~~~~a~~~a~~~Aa~~v~~~g~~~ 334 (341)
++++|+++|+++|+++|++.|+..
T Consensus 370 ~l~~al~~A~a~Aa~~v~~~Ga~~ 393 (426)
T PLN02813 370 DLRGMGELAARVAATVVGQQGTRL 393 (426)
T ss_pred CHHHHHHHHHHHHHHHHcccCCCc
Confidence 999999999999999999999943
No 5
>PRK15074 inosine/guanosine kinase; Provisional
Probab=100.00 E-value=3.1e-48 Score=358.88 Aligned_cols=315 Identities=17% Similarity=0.290 Sum_probs=259.2
Q ss_pred CCceEEEEcCceeeeEeecChhHHHHhCCCCCceEecccc-cccHHHHHhccCC-ceEecCchHHHHHHHHHHHhcCCCc
Q 019448 3 QEGILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEK-HLPLYDEMASKYN-VEYIAGGATQNSIRVAQWMLQIPGA 80 (341)
Q Consensus 3 ~~~~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~GG~a~n~a~~l~~l~~lg~~ 80 (341)
+..+|++||++++|+...++++||.+|++++|+..+.+.+ +.+.......... ....+||+++|+|+++++| + |.+
T Consensus 32 ~~~~v~g~GNaLvDi~~~v~d~fL~~~~l~kg~m~li~~e~~~~l~~~l~~~~~~~~~~~GGsaaNtA~~lArL-G-G~~ 109 (434)
T PRK15074 32 SRTYIVGIDQTLVDIEAKVDDEFLERYGLSKGHSLVIEDDVAEALYQELKQNNLITHEFAGGTIGNTLHNYSVL-A-DDR 109 (434)
T ss_pred CCCcEEEeCCceeeEEEeeCHHHHHHcCCCCCceEecCHHHHHHHHHHHhhccccccccCCCHHHHHHHHHHHc-C-CCC
Confidence 4568999999999999999999999999999999888764 6566665554332 3567999999999999983 2 489
Q ss_pred EEEEeeeecC-chhHHHHHHHH--hcCcceeeeecCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchhhhhc
Q 019448 81 TSYIGCIGKD-KFGEEMKKNSK--LAGVNVHYYEDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENWALVE 156 (341)
Q Consensus 81 v~~i~~vG~D-~~g~~i~~~l~--~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 156 (341)
+.|+|.||+| .+|+++++.|+ +.||+++++...+.+|+.++++++ +|+|+++.+.+++..+++++++. ..++
T Consensus 110 ~~fig~VGdDd~~G~~~~~~L~~~~~GVdt~~v~~~~~~TG~~~VlV~~dGeRt~~t~~GA~~~Lt~edld~----~~i~ 185 (434)
T PRK15074 110 SVLLGVMSSNIEIGSYAYRYLCNTSSRTDLNYLQGVDGPIGRCFTLISEDGERTFAISPGHMNQLRPESIPE----DVIA 185 (434)
T ss_pred eEEEEEeCCCHHHHHHHHHHhhhhhCCccCcceEEcCCCCEEEEEEECCCCCEEEEEecChhhcCChhHCCH----hHhc
Confidence 9999999999 79999999997 689999987655567999999987 89999999999888999988874 5689
Q ss_pred cceEEEEeccccc-----cCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHH-HhhcCCCcEEecCHHHHHHHhhhc
Q 019448 157 KAKYFYIAGFFLT-----VSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDAL-EKVLPYMDYIFGNETEARTFSKVQ 230 (341)
Q Consensus 157 ~~~~v~i~~~~~~-----~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~-~~~l~~~dvl~~n~~E~~~l~~~~ 230 (341)
+++++|++++.+. ..++.+..+++.|+++|+++++|++.+......++.+ ..+++++|++++|++|+..|++
T Consensus 186 ~a~ilyl~Gy~l~~~~~~~~~~a~~~al~~Ake~G~~VslD~s~~~~v~~~~~~~~e~l~~~vDILf~NeeEa~~LtG-- 263 (434)
T PRK15074 186 GASALVLTAYLVRCKPGEPMPEATMKAIEYAKKHNVPVVLTLGTKFVIEDNPQWWQEFLKEHVSILAMNEDEAEALTG-- 263 (434)
T ss_pred cCCEEEEeeeehhcccCCCcHHHHHHHHHHHHHcCCEEEEECcchhhccccHHHHHHHHHhcCCEEEcCHHHHHHHhC--
Confidence 9999999998753 2367888999999999999999998764322222222 3456799999999999999986
Q ss_pred CCCCCCHHHHHHHHhcCCccccCCccEEEEEeCCCceEEEECCe-------e----------------------------
Q 019448 231 GWETDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGK-------L---------------------------- 275 (341)
Q Consensus 231 ~~~~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~-------~---------------------------- 275 (341)
.++++++++.+ .+ +++.||||+|++|++++..++ .
T Consensus 264 ---~~d~eea~~~L------~~-~~~~VVVTlG~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (434)
T PRK15074 264 ---ESDPLLASDKA------LD-WVDLVLCTAGPIGLYMAGYTEDEAKRETQHPLLPGAIAEFNRYEFSRAMRKKDCQNP 333 (434)
T ss_pred ---CCCHHHHHHHH------Hc-CCCEEEEEECCCCEEEEecccccccCceeeeccccccccccchhcccchhccccccc
Confidence 35788888887 33 368999999999999964221 1
Q ss_pred ----EEEeceecCCCcccCCCCCchhhHHHHHHHHhcCC--------------------CHHHHHHHHHHHhhhhhhhcc
Q 019448 276 ----KKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEK--------------------PIEECVRAGCYTSHVIIQRSG 331 (341)
Q Consensus 276 ----~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~--------------------~~~~a~~~a~~~Aa~~v~~~g 331 (341)
.++|++...+++++|||||||+|+|||+|+|++|+ ++++|+++|+++|+.++++.|
T Consensus 334 ~~~~~~~~~~~~~~~~~vDttGAGD~f~~gfl~~l~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~vi~~~G 413 (434)
T PRK15074 334 LRVYSHIAPYMGGPEKIMNTNGAGDGALSALLHDITANSYHRSNVPNSSKHKRTYLTYSSLAQVCKYANRVSYEVLNQHS 413 (434)
T ss_pred cccccccCcccCCCCcceeCCCcHHHHHHHHHHHHHCCCcccccccccccccccccccCCHHHHHHHHHHHHHHHHhhcC
Confidence 26666632245899999999999999999999998 899999999999999999999
Q ss_pred ccCC
Q 019448 332 CTYP 335 (341)
Q Consensus 332 ~~~p 335 (341)
++++
T Consensus 414 ~~~~ 417 (434)
T PRK15074 414 PRLS 417 (434)
T ss_pred CCCC
Confidence 9444
No 6
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=9.4e-48 Score=352.77 Aligned_cols=313 Identities=23% Similarity=0.327 Sum_probs=261.3
Q ss_pred CceEEEEc-CceeeeEeecChhHHHHhCCCCCceEecccc-cccHHHHHhc--------cCCceEecCchHHHHHHHHHH
Q 019448 4 EGILLGMG-NPLLDISSVVDDDFLNKYDIKLNNAILAEEK-HLPLYDEMAS--------KYNVEYIAGGATQNSIRVAQW 73 (341)
Q Consensus 4 ~~~v~~iG-~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------~~~~~~~~GG~a~n~a~~l~~ 73 (341)
+++|++|| ++++|+...++++||.++++++|+..+.+.+ +.....+... ......++||++.|+++++++
T Consensus 19 ~~~v~g~g~nalvD~~~~v~~~~l~~~~~~kg~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~GGsa~N~a~~la~ 98 (367)
T PLN02379 19 PPLVLGLQPVALVDHVARVDWSLLDQIPGDRGGSIRVTIEELEHILREVNAHILPSPDDLSPIKTMAGGSVANTIRGLSA 98 (367)
T ss_pred CCcEEEEccccEEEEEEecCHHHHHHcCCCCcceeecCHHHHHHHHHHhhhcccccccccccceecCCCHHHHHHHHHHH
Confidence 56899999 9999999999999999999999999776654 4444444432 224678899999999999985
Q ss_pred HhcCCCcEEEEeeeecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchh
Q 019448 74 MLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENW 152 (341)
Q Consensus 74 l~~lg~~v~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (341)
. ||.++.|+|.||+|.+|+++++.|++.||+++++...+++|+.++++++ +|+|++..+.++...++++++..
T Consensus 99 ~--LG~~~~~ig~VG~D~~G~~~~~~L~~~GI~~~~~~~~~~~Tg~~~v~v~~dgert~~~~lg~~~~l~~~~~~~---- 172 (367)
T PLN02379 99 G--FGVSTGIIGACGDDEQGKLFVSNMGFSGVDLSRLRAKKGPTAQCVCLVDALGNRTMRPCLSSAVKLQADELTK---- 172 (367)
T ss_pred h--cCCCEEEEEEeCCChhHHHHHHHHHHcCCCccCcccCCCCCceEEEEECCCCCccccCCccccccCChhHCCH----
Confidence 3 4699999999999999999999999999998887655668999988887 78998877767666777776653
Q ss_pred hhhccceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcC--CCcEEecCHHHHHHHhhhc
Q 019448 153 ALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLP--YMDYIFGNETEARTFSKVQ 230 (341)
Q Consensus 153 ~~l~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~--~~dvl~~n~~E~~~l~~~~ 230 (341)
..+++++++|++ +. ..+++.+.++++.++++++++++|++.+.....+++.+.++++ ++|++++|++|+..+++..
T Consensus 173 ~~~~~~~~v~v~-~~-~~~~~~~~~~~~~A~~~g~~v~lD~s~~~~v~~~r~~l~~ll~~~~vDilf~Ne~Ea~~l~~~~ 250 (367)
T PLN02379 173 EDFKGSKWLVLR-YG-FYNLEVIEAAIRLAKQEGLSVSLDLASFEMVRNFRSPLLQLLESGKIDLCFANEDEARELLRGE 250 (367)
T ss_pred HHHhcCCEEEEE-cc-cCCHHHHHHHHHHHHHcCCEEEEeccchhhhhhhhHHHHHHhhcCCccEEEcCHHHHHHHhcCC
Confidence 568899999999 43 2567889999999999999999999876555556676777774 8999999999999998632
Q ss_pred CCCCCCHHHHHHHHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCC
Q 019448 231 GWETDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEK 310 (341)
Q Consensus 231 ~~~~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~ 310 (341)
. .++.+++.+.+ ..+++.+|||+|++|++++++++.+++++++. .+++|||||||+|+|||+++|++|+
T Consensus 251 ~--~~~~~~~~~~l-------~~~~~~vvvT~G~~Ga~~~~~~~~~~v~a~~~--~~vVDTtGAGDaFaagfl~gl~~G~ 319 (367)
T PLN02379 251 Q--ESDPEAALEFL-------AKYCNWAVVTLGSKGCIARHGKEVVRVPAIGE--TNAVDATGAGDLFASGFLYGLIKGL 319 (367)
T ss_pred C--CCCHHHHHHHH-------HhcCCEEEEEECCCCeEEEECCEEEEecCCCC--CCcccCCChhHHHHHHHHHHHHCCC
Confidence 2 23566666654 34578999999999999999888888887642 3789999999999999999999999
Q ss_pred CHHHHHHHHHHHhhhhhhhccccCC
Q 019448 311 PIEECVRAGCYTSHVIIQRSGCTYP 335 (341)
Q Consensus 311 ~~~~a~~~a~~~Aa~~v~~~g~~~p 335 (341)
++++|+++|+++|+.+|++.|++.+
T Consensus 320 ~l~~a~~~g~~aAa~vi~~~G~~~~ 344 (367)
T PLN02379 320 SLEECCKVGACSGGSVVRALGGEVT 344 (367)
T ss_pred CHHHHHHHHHHHHHHHHhccCCCCC
Confidence 9999999999999999999999754
No 7
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=100.00 E-value=3.9e-47 Score=344.00 Aligned_cols=310 Identities=46% Similarity=0.751 Sum_probs=259.9
Q ss_pred ceEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEEE
Q 019448 5 GILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYI 84 (341)
Q Consensus 5 ~~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i 84 (341)
.+|+++|.+++|++..+++..+..+++++|+.++...... .......+....+||+++|+|+++++ ||.++.++
T Consensus 2 ~~v~~vG~~~~D~~~~v~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~GG~~~N~A~~la~---LG~~~~~i 75 (312)
T cd01168 2 YDVLGLGNALVDILAQVDDAFLEKLGLKKGDMILADMEEQ---EELLAKLPVKYIAGGSAANTIRGAAA---LGGSAAFI 75 (312)
T ss_pred ceEEEECCCeEEEEEecCHHHHHHcCCCCCceeecCHHHH---HHHHHhcCccccCCCHHHHHHHHHHH---hcCCeEEE
Confidence 5699999999999999997766667777777766632111 11111124578999999999999998 46999999
Q ss_pred eeeecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchhhhhccceEEEE
Q 019448 85 GCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYI 163 (341)
Q Consensus 85 ~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~i 163 (341)
|.+|+|.+|+.+++.|+++||+++++...+.+|+.++++++ +|+|+++.+.++...++++++.. ..+++++++|+
T Consensus 76 ~~vG~D~~g~~i~~~l~~~GV~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~----~~l~~~~~v~~ 151 (312)
T cd01168 76 GRVGDDKLGDFLLKDLRAAGVDTRYQVQPDGPTGTCAVLVTPDAERTMCTYLGAANELSPDDLDW----SLLAKAKYLYL 151 (312)
T ss_pred EEeccChhHHHHHHHHHHCCCccccccCCCCCceEEEEEEcCCCceeeecccchhhcCChhHCCH----HHHccCCEEEE
Confidence 99999999999999999999999988655678999988887 78999888888777888887753 56899999999
Q ss_pred eccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCCHHHHHHH
Q 019448 164 AGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALK 243 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~~~~~~~ 243 (341)
+++.+..+++.+..+++.+++.+.++++|+..+.+....++.+.++++++|++++|++|++.+++. +.++..++++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~---~~~~~~~~a~~ 228 (312)
T cd01168 152 EGYLLTVPPEAILLAAEHAKENGVKIALNLSAPFIVQRFKEALLELLPYVDILFGNEEEAEALAEA---ETTDDLEAALK 228 (312)
T ss_pred EEEecCCCHHHHHHHHHHHHHcCCEEEEeCCcHHHHHHHHHHHHHHHhhCCEEEeCHHHHHHHhCC---CCCChHHHHHH
Confidence 997666667899999999999999999999765444445566788999999999999999999863 22456778888
Q ss_pred HhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHHHHHHHh
Q 019448 244 LSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTS 323 (341)
Q Consensus 244 l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~~a~~~A 323 (341)
+ .+.+++.+|||+|++|++++++++.+++|++++ ++++|||||||+|+|||++++++|+++++|+++|+++|
T Consensus 229 l------~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~--~~vvDttGAGDaf~ag~l~~l~~g~~~~~a~~~a~~~A 300 (312)
T cd01168 229 L------LALRCRIVVITQGAKGAVVVEGGEVYPVPAIPV--EKIVDTNGAGDAFAGGFLYGLVQGEPLEECIRLGSYAA 300 (312)
T ss_pred H------HhcCCCEEEEecCCCCeEEEECCEEEeCCCCCC--CCcccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 8 667889999999999999998888888887651 38999999999999999999999999999999999999
Q ss_pred hhhhhhccccCC
Q 019448 324 HVIIQRSGCTYP 335 (341)
Q Consensus 324 a~~v~~~g~~~p 335 (341)
+++|++.|+..|
T Consensus 301 a~~v~~~G~~~~ 312 (312)
T cd01168 301 AEVIQQLGPRLP 312 (312)
T ss_pred HHHHhccCCCCC
Confidence 999999998643
No 8
>PRK11142 ribokinase; Provisional
Probab=100.00 E-value=1.4e-46 Score=339.52 Aligned_cols=292 Identities=23% Similarity=0.351 Sum_probs=244.5
Q ss_pred ceEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEEE
Q 019448 5 GILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYI 84 (341)
Q Consensus 5 ~~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i 84 (341)
++|+|+|++++|++..++ ++|.++......+....+||++.|+|++|++ +|.++.++
T Consensus 3 ~~i~~iG~~~~D~~~~~~--------------------~~p~~~~~~~~~~~~~~~GG~~~Nva~~la~---lG~~~~~~ 59 (306)
T PRK11142 3 GKLVVLGSINADHVLNLE--------------------SFPRPGETLTGRHYQVAFGGKGANQAVAAAR---LGADIAFI 59 (306)
T ss_pred CcEEEECCceeeEEEEeC--------------------CCCCCCCeeEeccceecCCCcHHHHHHHHHh---cCCcEEEE
Confidence 469999999999999887 5666666667777888999999999999997 46999999
Q ss_pred eeeecCchhHHHHHHHHhcCcceeeee-cCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchhhhhccceEEE
Q 019448 85 GCIGKDKFGEEMKKNSKLAGVNVHYYE-DESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFY 162 (341)
Q Consensus 85 ~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 162 (341)
|.+|+|.+|+.+++.|+++||+++++. .++.+|+.++++++ +|+|+++.+.++...+++++++. ....+.+++++|
T Consensus 60 ~~vG~D~~g~~i~~~L~~~gV~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~v~ 137 (306)
T PRK11142 60 ACVGDDSIGESMRQQLAKDGIDTAPVSVIKGESTGVALIFVNDEGENSIGIHAGANAALTPALVEA--HRELIANADALL 137 (306)
T ss_pred EEECCChhHHHHHHHHHHcCCChhhEEEcCCCCCCEEEEEECCCCCEEEEEeCCccccCCHHHHHH--HHhhhccCCEEE
Confidence 999999999999999999999999875 55667888888776 68888887777766777766542 235578999999
Q ss_pred EeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCCHHHHHH
Q 019448 163 IAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIAL 242 (341)
Q Consensus 163 i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~~~~~~ 242 (341)
+++ ..+.+.+..+++.+++++.++++|+.... .....+++++|++++|++|++.+++....+.++..++++
T Consensus 138 ~~~---~~~~~~~~~~~~~a~~~g~~v~~d~~~~~------~~~~~~~~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~ 208 (306)
T PRK11142 138 MQL---ETPLETVLAAAKIAKQHGTKVILNPAPAR------ELPDELLALVDIITPNETEAEKLTGIRVEDDDDAAKAAQ 208 (306)
T ss_pred EeC---CCCHHHHHHHHHHHHHcCCEEEEECCCCc------ccCHHHHhhCCEEcCCHHHHHHHhCCCCCChHHHHHHHH
Confidence 975 34567888999999999999999996421 113468889999999999999998754333345666777
Q ss_pred HHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 019448 243 KLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYT 322 (341)
Q Consensus 243 ~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~~a~~~ 322 (341)
.+ ...+++.+|||+|++|++++++++.+++|++++ +++||+||||+|+|||++++++|+++++|+++|+++
T Consensus 209 ~l------~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v---~vvDt~GAGDaF~Agfi~~l~~g~~~~~al~~a~~~ 279 (306)
T PRK11142 209 VL------HQKGIETVLITLGSRGVWLSENGEGQRVPGFRV---QAVDTIAAGDTFNGALVTALLEGKPLPEAIRFAHAA 279 (306)
T ss_pred HH------HHhCCCeEEEEECCCcEEEEeCCcceeccCCCc---ccccCCCchhHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 77 566899999999999999998888888887654 799999999999999999999999999999999999
Q ss_pred hhhhhhhcccc--CCCCCC
Q 019448 323 SHVIIQRSGCT--YPEKPE 339 (341)
Q Consensus 323 Aa~~v~~~g~~--~p~~~~ 339 (341)
|+++|++.|+. +|+.++
T Consensus 280 Aa~~~~~~G~~~~~~~~~~ 298 (306)
T PRK11142 280 AAIAVTRKGAQPSIPWREE 298 (306)
T ss_pred HHHHcCCCcccccCCCHHH
Confidence 99999999984 576554
No 9
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=100.00 E-value=1.4e-45 Score=330.98 Aligned_cols=285 Identities=24% Similarity=0.369 Sum_probs=241.9
Q ss_pred eEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEEEe
Q 019448 6 ILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i~ 85 (341)
+|+|+|.+++|++..++ ++|..++..+......++||++.|+|.+|++ +|.++.++|
T Consensus 1 ~il~iG~~~~D~~~~~~--------------------~~~~~~~~~~~~~~~~~~GG~~~NvA~~l~~---lG~~~~~~~ 57 (292)
T cd01174 1 KVVVVGSINVDLVTRVD--------------------RLPKPGETVLGSSFETGPGGKGANQAVAAAR---LGARVAMIG 57 (292)
T ss_pred CEEEEeeceeEEEEEec--------------------CCCCCCCcEEeccceecCCCcHHHHHHHHHH---cCCceEEEE
Confidence 58999999999999876 5566666667777889999999999999997 569999999
Q ss_pred eeecCchhHHHHHHHHhcCcceeee-ecCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchhhhhccceEEEE
Q 019448 86 CIGKDKFGEEMKKNSKLAGVNVHYY-EDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYI 163 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~-~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~i 163 (341)
.+|+|.+|+.+++.|+++||+++++ ..++.+|+.++++.+ +|+|+++.+.++...+++++++. ....+..++++++
T Consensus 58 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~ 135 (292)
T cd01174 58 AVGDDAFGDELLENLREEGIDVSYVEVVVGAPTGTAVITVDESGENRIVVVPGANGELTPADVDA--ALELIAAADVLLL 135 (292)
T ss_pred EEcCCccHHHHHHHHHHcCCCceEEEEcCCCCceeEEEEEcCCCceEEEEeCCCCCCCCHHHHHH--HHHhcccCCEEEE
Confidence 9999999999999999999999998 456678999888886 58888887777666666655542 3356889999999
Q ss_pred eccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCCHHHHHHH
Q 019448 164 AGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALK 243 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~~~~~~~ 243 (341)
++ ..+.+.+..+++.+++++.++++|+.... +..+++++++|++++|++|++.+++....+.++.+++++.
T Consensus 136 ~~---~~~~~~~~~~~~~a~~~g~~v~~D~~~~~------~~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~ 206 (292)
T cd01174 136 QL---EIPLETVLAALRAARRAGVTVILNPAPAR------PLPAELLALVDILVPNETEAALLTGIEVTDEEDAEKAARL 206 (292)
T ss_pred eC---CCCHHHHHHHHHHHHhcCCEEEEeCCCcC------cCcHHHHhhCCEEeeCHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 75 44678889999999999999999997532 1235788999999999999999987654444456677788
Q ss_pred HhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHHHHHHHh
Q 019448 244 LSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTS 323 (341)
Q Consensus 244 l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~~a~~~A 323 (341)
+ .+.|++.+|+|+|++|++++++++.+++|++++ +++|++||||+|+|||++++++|+++++|+++|+++|
T Consensus 207 l------~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~---~~vdt~GaGD~F~ag~l~~l~~g~~~~~al~~a~~~A 277 (292)
T cd01174 207 L------LAKGVKNVIVTLGAKGALLASGGEVEHVPAFKV---KAVDTTGAGDTFIGALAAALARGLSLEEAIRFANAAA 277 (292)
T ss_pred H------HHcCCCEEEEEeCCCceEEEeCCceEEecCCCc---ccCCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7 667899999999999999998888888887654 8899999999999999999999999999999999999
Q ss_pred hhhhhhcccc
Q 019448 324 HVIIQRSGCT 333 (341)
Q Consensus 324 a~~v~~~g~~ 333 (341)
+.++++.|+.
T Consensus 278 a~~~~~~G~~ 287 (292)
T cd01174 278 ALSVTRPGAQ 287 (292)
T ss_pred HHHhcCcCCC
Confidence 9999999994
No 10
>PTZ00292 ribokinase; Provisional
Probab=100.00 E-value=5.8e-46 Score=338.30 Aligned_cols=300 Identities=22% Similarity=0.310 Sum_probs=245.7
Q ss_pred CCceEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEE
Q 019448 3 QEGILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATS 82 (341)
Q Consensus 3 ~~~~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~ 82 (341)
.+++|+|+|.+++|+++.++ ++|.+++..+.......+||.+.|+|++|++ ||.++.
T Consensus 14 ~~~~vlviG~~~vD~~~~~~--------------------~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~---lG~~~~ 70 (326)
T PTZ00292 14 AEPDVVVVGSSNTDLIGYVD--------------------RMPQVGETLHGTSFHKGFGGKGANQAVMASK---LGAKVA 70 (326)
T ss_pred CCCCEEEEccceeeEEEecC--------------------CCCCCCCceeecCceeCCCCcHHHHHHHHHH---cCCCeE
Confidence 35689999999999999887 5566666666677788999999999999998 569999
Q ss_pred EEeeeecCchhHHHHHHHHhcCcceeee-ecCCCCceeEEEEEe--CCccceeecccccccCCcccCCCcchhhhhcc-c
Q 019448 83 YIGCIGKDKFGEEMKKNSKLAGVNVHYY-EDESASTGTCAVCVV--GGERSLVANLSAANCYKSEHLKKPENWALVEK-A 158 (341)
Q Consensus 83 ~i~~vG~D~~g~~i~~~l~~~gi~~~~~-~~~~~~t~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~ 158 (341)
++|.+|+|.+|+.+++.|++.||+++++ ...+.+|+.++++++ +|+|+++.+.++...++++.++. .+..+.. +
T Consensus 71 ~is~vG~D~~g~~i~~~l~~~GI~~~~~~~~~~~~t~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~--~~~~i~~~~ 148 (326)
T PTZ00292 71 MVGMVGTDGFGSDTIKNFKRNGVNTSFVSRTENSSTGLAMIFVDTKTGNNEIVIIPGANNALTPQMVDA--QTDNIQNIC 148 (326)
T ss_pred EEEEECCChhHHHHHHHHHHcCCChhhEEEcCCCCCcEEEEEEeCCCCceEEEEeCCccccCCHHHHHH--HHHHhhhhC
Confidence 9999999999999999999999999998 456678998888876 57888887777766777766643 2344667 8
Q ss_pred eEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCCHH
Q 019448 159 KYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVE 238 (341)
Q Consensus 159 ~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~~ 238 (341)
+++++++ ..+.+...++++.+++++.++++|++... .....+.+.++++++|++++|++|++.+++....+.++..
T Consensus 149 ~~~~~~~---~~~~~~~~~~~~~a~~~g~~v~~D~~~~~-~~~~~~~~~~~l~~~dii~~n~~E~~~l~g~~~~~~~~~~ 224 (326)
T PTZ00292 149 KYLICQN---EIPLETTLDALKEAKERGCYTVFNPAPAP-KLAEVEIIKPFLKYVSLFCVNEVEAALITGMEVTDTESAF 224 (326)
T ss_pred CEEEECC---CCCHHHHHHHHHHHHHcCCEEEEECCCCc-cccccccHHHHHhcCCEEcCCHHHHHHHhCCCCCChhHHH
Confidence 9999864 34667888899999999999999997432 1111245778999999999999999999874332334455
Q ss_pred HHHHHHhcCCccccCCccEEEEEeCCCceEEEECCe-eEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHH
Q 019448 239 EIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGK-LKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVR 317 (341)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~-~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~ 317 (341)
++++.+ ...+++.+|||+|++|++++++++ .+++|++++ +++||+||||+|+|||++++++|+++++|++
T Consensus 225 ~~~~~l------~~~g~~~vvvT~G~~Ga~~~~~~~~~~~~~~~~~---~vvDttGAGDaF~ag~l~~l~~g~~~~~al~ 295 (326)
T PTZ00292 225 KASKEL------QQLGVENVIITLGANGCLIVEKENEPVHVPGKRV---KAVDTTGAGDCFVGSMAYFMSRGKDLKESCK 295 (326)
T ss_pred HHHHHH------HHcCCCeEEEEeCCCcEEEEeCCCceEEccCCcc---ccCCCcchHHHHHHHHHHHHHCCCCHHHHHH
Confidence 666666 566889999999999999988764 478887654 8999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhcccc--CCCCCCC
Q 019448 318 AGCYTSHVIIQRSGCT--YPEKPEF 340 (341)
Q Consensus 318 ~a~~~Aa~~v~~~g~~--~p~~~~~ 340 (341)
+|+++|+++++++|+. +|+.+++
T Consensus 296 ~a~a~Aa~~v~~~G~~~~~~~~~~~ 320 (326)
T PTZ00292 296 RANRIAAISVTRHGTQSSYPHPSEL 320 (326)
T ss_pred HHHHHHHHHcCCCCccccCCCHHHH
Confidence 9999999999999995 5766554
No 11
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=1.3e-43 Score=334.87 Aligned_cols=300 Identities=18% Similarity=0.201 Sum_probs=236.4
Q ss_pred CCceEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhc-----------cCCceEecCchHHHHHHHH
Q 019448 3 QEGILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMAS-----------KYNVEYIAGGATQNSIRVA 71 (341)
Q Consensus 3 ~~~~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~GG~a~n~a~~l 71 (341)
++.+|+++|++++|+++.++ ++|..++... .......+|| ++|+|++|
T Consensus 71 ~~~~vl~lG~~~vD~i~~V~--------------------~lP~~~~~~~~~~~~~~~~~~~~~~~~~~GG-~~NvAvaL 129 (470)
T PLN02341 71 KEIDVATLGNLCVDIVLPVP--------------------ELPPPSREERKAYMEELAASPPDKKSWEAGG-NCNFAIAA 129 (470)
T ss_pred ccccEEEECCcceeEEEecC--------------------CCCCCCHHHHHHHHHhhcccccccceecCCh-HHHHHHHH
Confidence 44689999999999999987 5565443211 1334556788 68999999
Q ss_pred HHHhcCCCcEEEEeeeecCchhHHHHHHHHhcCcceeeeecC---------CCCceeEEEEEe-CCccceeecccccccC
Q 019448 72 QWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDE---------SASTGTCAVCVV-GGERSLVANLSAANCY 141 (341)
Q Consensus 72 ~~l~~lg~~v~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~---------~~~t~~~~~~~~-~g~~~~~~~~~~~~~~ 141 (341)
++ ||.++.++|.||+|.+|+++++.|++.||++.++... ..+|+.++++++ +|++.++...+.....
T Consensus 130 ar---LG~~v~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~vlvd~~ger~~~~~~~~~~~~ 206 (470)
T PLN02341 130 AR---LGLRCSTIGHVGDEIYGKFLLDVLAEEGISVVGLIEGTDAGDSSSASYETLLCWVLVDPLQRHGFCSRADFGPEP 206 (470)
T ss_pred HH---cCCCeEEEEEecCcHHHHHHHHHHHHcCCeeeEEEecCccccccccCCCceeEEEEEcCCCCceeeecccccccc
Confidence 98 5699999999999999999999999999999987532 246888888887 6777654433322222
Q ss_pred CcccCCC--cchhhhhccceEEEEecccc-ccCHHHHHHHHHHHHhCCCeEEEeCCchh---HH--HHHHHHHHhhcCCC
Q 019448 142 KSEHLKK--PENWALVEKAKYFYIAGFFL-TVSPDSIQLVAEHAAANNKVFMMNLSAPF---IC--EFFKDALEKVLPYM 213 (341)
Q Consensus 142 ~~~~~~~--~~~~~~l~~~~~v~i~~~~~-~~~~~~~~~~~~~a~~~~~~v~~d~~~~~---~~--~~~~~~~~~~l~~~ 213 (341)
..+++.. ......++++|++|++++.+ ..+.+.+..+++.+++.+.++++|+.... |. +...+.++++++++
T Consensus 207 ~~~~~~~l~~~~~~~l~~adiv~lsg~~~~~~~~~~~~~~~~~Ak~~g~~V~~Dp~~~~~~~~~~~~~~~~~l~~~L~~~ 286 (470)
T PLN02341 207 AFSWISKLSAEAKMAIRQSKALFCNGYVFDELSPSAIASAVDYAIDVGTAVFFDPGPRGKSLLVGTPDERRALEHLLRMS 286 (470)
T ss_pred chhhhhcccHHHHhhhhcCCEEEEeceeCCcCCHHHHHHHHHHHHHcCCEEEEeCCCcccccccChHHHHHHHHHHHhhC
Confidence 2222211 12235688999999998764 46788899999999999999999996431 11 11334578899999
Q ss_pred cEEecCHHHHHHHhhhcCCCCCCHHHHHHHHhcCCccccCC--ccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCC
Q 019448 214 DYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIR--KRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDT 291 (341)
Q Consensus 214 dvl~~n~~E~~~l~~~~~~~~~d~~~~~~~l~~~~~~~~~~--~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~ 291 (341)
|++++|++|++.+++. ++++++++.+ ...+ .+.||||+|++|++++++++.+++|++++ +++||
T Consensus 287 Dil~~Ne~Ea~~l~g~-----~~~~~a~~~l------~~~g~~~k~VVVTlG~~Ga~~~~~~~~~~vpa~~v---~vVDT 352 (470)
T PLN02341 287 DVLLLTSEEAEALTGI-----RNPILAGQEL------LRPGIRTKWVVVKMGSKGSILVTRSSVSCAPAFKV---NVVDT 352 (470)
T ss_pred CEEEecHHHHHHHhCC-----CCHHHHHHHH------HhcCCCCCEEEEeeCCCCeEEEECCeeEEeCCCCc---CCCCC
Confidence 9999999999999873 5677888887 4444 57999999999999999988888887755 89999
Q ss_pred CCCchhhHHHHHHHHhcCCCHHHHHHHHHHHhhhhhhhccc--cCCCCCCC
Q 019448 292 NGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGC--TYPEKPEF 340 (341)
Q Consensus 292 tGAGDaf~ag~~~~l~~g~~~~~a~~~a~~~Aa~~v~~~g~--~~p~~~~~ 340 (341)
|||||+|+|||++++++|+++++|+++|+++|+++|++.|+ .+|+.+|+
T Consensus 353 tGAGDaF~Agfl~gll~G~~l~eal~~A~a~aA~~v~~~Ga~~~~p~~~ev 403 (470)
T PLN02341 353 VGCGDSFAAAIALGYIHNLPLVNTLTLANAVGAATAMGCGAGRNVATLEKV 403 (470)
T ss_pred cCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcCCCCCCCCHHHH
Confidence 99999999999999999999999999999999999999997 57776554
No 12
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=2.1e-43 Score=316.34 Aligned_cols=284 Identities=21% Similarity=0.318 Sum_probs=229.1
Q ss_pred eEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEEEe
Q 019448 6 ILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i~ 85 (341)
+|+++|++++|++..++ ++|..+...+.......+|| +.|+|+++++ ||.++.++|
T Consensus 1 ~i~~iG~~~~D~i~~~~--------------------~~~~~~~~~~~~~~~~~~GG-~~Nva~~l~~---lG~~~~~~~ 56 (289)
T cd01944 1 KVLVIGAAVVDIVLDVD--------------------KLPASGGDIEAKSKSYVIGG-GFNVMVAASR---LGIPTVNAG 56 (289)
T ss_pred CeEEEcceeEEEEeecc--------------------cCCCCCCccccceeeeccCc-HHHHHHHHHH---cCCCeEEEE
Confidence 58999999999999887 56777777777778899999 9999999997 469999999
Q ss_pred eeecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchhhhhccceEEEEe
Q 019448 86 CIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIA 164 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~i~ 164 (341)
.+|+|.+|+.+++.|+++||+++++...+..|+.++++++ +|+|+++.+.++...+++++++. ..+.+++++|++
T Consensus 57 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 132 (289)
T cd01944 57 PLGNGNWADQIRQAMRDEGIEILLPPRGGDDGGCLVALVEPDGERSFISISGAEQDWSTEWFAT----LTVAPYDYVYLS 132 (289)
T ss_pred EecCChHHHHHHHHHHHcCCccccccccCCCCeEEEEEEcCCCceEEEEeCCccCCCCHHHhcc----ccCCCCCEEEEe
Confidence 9999999999999999999999988766667777766666 68998888777766777776654 236789999999
Q ss_pred cccccc---CHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCCHHHHH
Q 019448 165 GFFLTV---SPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIA 241 (341)
Q Consensus 165 ~~~~~~---~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~~~~~ 241 (341)
++.+.. +.+.+..+++.++ .+.++++|+....+ ....+.++++++++|++++|++|++.+++.. ..+...++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~D~~~~~~-~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~~---~~~~~~~~ 207 (289)
T cd01944 133 GYTLASENASKVILLEWLEALP-AGTTLVFDPGPRIS-DIPDTILQALMAKRPIWSCNREEAAIFAERG---DPAAEASA 207 (289)
T ss_pred CccccCcchhHHHHHHHHHhcc-CCCEEEEcCccccc-ccCHHHHHHHHhcCCEEccCHHHHHHHhCCC---CcchHHHH
Confidence 876422 2455666666544 56889999964321 1123457889999999999999999998742 12223335
Q ss_pred HHHhcCCccccCCccEEEEEeCCCceEEEE-CCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHHHHH
Q 019448 242 LKLSQWPKASEIRKRTAVITQGADPVVVAQ-DGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGC 320 (341)
Q Consensus 242 ~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~-~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~~a~ 320 (341)
+.+ .+.+++.+|||+|++|++++. ++..+++|++++ +++|||||||+|+|||++++++|+++++|+++|+
T Consensus 208 ~~~------~~~~~~~vvvt~G~~Ga~~~~~~~~~~~~~~~~~---~vvDt~GAGDaf~ag~l~~~~~g~~~~~a~~~a~ 278 (289)
T cd01944 208 LRI------YAKTAAPVVVRLGSNGAWIRLPDGNTHIIPGFKV---KAVDTIGAGDTHAGGMLAGLAKGMSLADAVLLAN 278 (289)
T ss_pred HHH------HhccCCeEEEEECCCcEEEEecCCCeEEecCCCC---CCccCCCchHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 555 456778999999999999998 455677776654 8899999999999999999999999999999999
Q ss_pred HHhhhhhhhcc
Q 019448 321 YTSHVIIQRSG 331 (341)
Q Consensus 321 ~~Aa~~v~~~g 331 (341)
++|+++|++.|
T Consensus 279 a~aa~~~~~~G 289 (289)
T cd01944 279 AAAAIVVTRSG 289 (289)
T ss_pred HHHHhhhccCC
Confidence 99999999987
No 13
>PRK09850 pseudouridine kinase; Provisional
Probab=100.00 E-value=1.4e-43 Score=320.72 Aligned_cols=294 Identities=18% Similarity=0.235 Sum_probs=228.8
Q ss_pred CCCCceEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCc
Q 019448 1 MAQEGILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGA 80 (341)
Q Consensus 1 ~~~~~~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~ 80 (341)
|..+++|+|+|.+.+|++...+ . |..............+||++.|+|.++++ +|.+
T Consensus 1 ~~~~~~i~~iG~~~vD~~~~~~--------------------~-~~~~~~~~~~~~~~~~GG~~~NvA~~l~~---lG~~ 56 (313)
T PRK09850 1 MREKDYVVIIGSANIDVAGYSH--------------------E-SLNYADSNPGKIKFTPGGVGRNIAQNLAL---LGNK 56 (313)
T ss_pred CCCCCcEEEECcEEEeeeccCC--------------------C-cCcCCCCCceEEEEeCCcHHHHHHHHHHH---cCCC
Confidence 7778899999999999998754 1 22222223345678899999999999998 4699
Q ss_pred EEEEeeeecCchhHHHHHHHHhcCcceeee-ecCCCCceeEEEEEe-CCccceeec-ccccccCCcccCCCcchhhhhcc
Q 019448 81 TSYIGCIGKDKFGEEMKKNSKLAGVNVHYY-EDESASTGTCAVCVV-GGERSLVAN-LSAANCYKSEHLKKPENWALVEK 157 (341)
Q Consensus 81 v~~i~~vG~D~~g~~i~~~l~~~gi~~~~~-~~~~~~t~~~~~~~~-~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 157 (341)
+.++|.||+|.+|+.+++.|++.||+++++ +.++.+|+.++++++ +|+|.+... .++...+.++.+.. ..+.+++
T Consensus 57 ~~~ig~vG~D~~g~~i~~~l~~~gVd~~~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 134 (313)
T PRK09850 57 AWLLSAVGSDFYGQSLLTQTNQSGVYVDKCLIVPGENTSSYLSLLDNTGEMLVAINDMNISNAITAEYLAQ--HREFIQR 134 (313)
T ss_pred eEEEEEecCchhHHHHHHHHHHcCCCchheeecCCCCceEEEEEecCCCCEEEEecCchHhhhCCHHHHHH--HHHHHhc
Confidence 999999999999999999999999999986 456667999988887 677766543 23333444444331 2245788
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCCH
Q 019448 158 AKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDV 237 (341)
Q Consensus 158 ~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~ 237 (341)
++++++++ ..+.+.+..+++.+ .++++++|+... |. .+.++++++++|++++|++|+..+++....+.++.
T Consensus 135 ~~~v~~~~---~~~~~~~~~~~~~~--~g~~v~~D~~~~-~~---~~~~~~~l~~~dil~~N~~Ea~~l~g~~~~~~~~~ 205 (313)
T PRK09850 135 AKVIVADC---NISEEALAWILDNA--ANVPVFVDPVSA-WK---CVKVRDRLNQIHTLKPNRLEAETLSGIALSGREDV 205 (313)
T ss_pred CCEEEEeC---CCCHHHHHHHHHhc--cCCCEEEEcCCH-HH---HHHHHhhhccceEEccCHHHHHHHhCCCCCCHHHH
Confidence 99999975 34566677676643 578999999753 21 23467788999999999999999987543334556
Q ss_pred HHHHHHHhcCCccccCCccEEEEEeCCCceEEEEC-CeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHH
Q 019448 238 EEIALKLSQWPKASEIRKRTAVITQGADPVVVAQD-GKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECV 316 (341)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~-~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~ 316 (341)
+++++.+ .+.|++.+|||+|++|++++++ +...++|+++ ++++|||||||+|+|||+++|++|+++++|+
T Consensus 206 ~~~~~~l------~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~---~~vvDttGAGDaF~agfi~~l~~g~~~~eal 276 (313)
T PRK09850 206 AKVAAWF------HQHGLNRLVLSMGGDGVYYSDISGESGWSAPIK---TNVINVTGAGDAMMAGLASCWVDGMPFAESV 276 (313)
T ss_pred HHHHHHH------HHcCCCEEEEEeCCceEEEEcCCCCeEecCCCC---cccccCCCcHHHHHHHHHHHHHcCCCHHHHH
Confidence 7777777 5678899999999999999974 3455667654 4899999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhccc--cCCCCC
Q 019448 317 RAGCYTSHVIIQRSGC--TYPEKP 338 (341)
Q Consensus 317 ~~a~~~Aa~~v~~~g~--~~p~~~ 338 (341)
++|+++|++++++.+. ..|+.+
T Consensus 277 ~~a~a~aa~~~~~~~~~~~~~~~~ 300 (313)
T PRK09850 277 RFAQGCSSMALSCEYTNNPDLSIA 300 (313)
T ss_pred HHHHHHHHHHhcCCCCCCcccCHH
Confidence 9999999999999988 444443
No 14
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=100.00 E-value=3.1e-43 Score=314.44 Aligned_cols=277 Identities=23% Similarity=0.334 Sum_probs=227.7
Q ss_pred eEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEEEe
Q 019448 6 ILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i~ 85 (341)
+|+++|++++|++..++ ++|..++..+.......+||.+.|+|.+|++ +|.++.++|
T Consensus 1 ~i~~iG~~~iD~~~~~~--------------------~~p~~~~~~~~~~~~~~~GG~~~NvA~~l~~---lG~~~~~~~ 57 (284)
T cd01945 1 RVLGVGLAVLDLIYLVA--------------------SFPGGDGKIVATDYAVIGGGNAANAAVAVAR---LGGQARLIG 57 (284)
T ss_pred CEEEECcceeEEEEEec--------------------cCCCCCCeEEEeEEEEecCCHHHHHHHHHHH---cCCCeEEEE
Confidence 58999999999999886 5666666667778889999999999999997 469999999
Q ss_pred eeecCchhHHHHHHHHhcCcceeeeec-CCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhhhhccceEEEEe
Q 019448 86 CIGKDKFGEEMKKNSKLAGVNVHYYED-ESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIA 164 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~~-~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~i~ 164 (341)
.+|+|.+|+.+++.|++.||+++++.. .+.+|+.+++...++++....+.+....+.+++++. ..+.+++++|++
T Consensus 58 ~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~i~ 133 (284)
T cd01945 58 VVGDDAIGRLILAELAAEGVDTSFIVVAPGARSPISSITDITGDRATISITAIDTQAAPDSLPD----AILGGADAVLVD 133 (284)
T ss_pred EecCchHHHHHHHHHHHcCCCccceeecCCCCCccEEEEccCCCceEEEecCCCCCCCcccCCH----HHhCcCCEEEEc
Confidence 999999999999999999999999864 445677765533467777766666666666666653 447999999998
Q ss_pred ccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCCHHHHHHHH
Q 019448 165 GFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKL 244 (341)
Q Consensus 165 ~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~~~~~~~l 244 (341)
+. .++...++++.+++++.++.+|+....+ .+ ++++++++|++++|++|++.+++. .+. ++++.+
T Consensus 134 ~~----~~~~~~~~~~~~~~~g~~v~~~~~~~~~----~~-~~~~~~~~dil~~n~~e~~~l~~~-----~~~-~~~~~l 198 (284)
T cd01945 134 GR----QPEAALHLAQEARARGIPIPLDLDGGGL----RV-LEELLPLADHAICSENFLRPNTGS-----ADD-EALELL 198 (284)
T ss_pred CC----CHHHHHHHHHHHHHcCCCeeEeccCCcc----cc-hHHHhccCCEEEeChhHHhhhcCC-----CHH-HHHHHH
Confidence 74 3567888999999999865554432221 22 668889999999999999998763 222 666666
Q ss_pred hcCCccccCCccEEEEEeCCCceEEEE-CCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHHHHHHHh
Q 019448 245 SQWPKASEIRKRTAVITQGADPVVVAQ-DGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTS 323 (341)
Q Consensus 245 ~~~~~~~~~~~~~vvvt~G~~G~~~~~-~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~~a~~~A 323 (341)
.+.+++.+|||+|++|+++++ +++.+++|++++ +++||+||||+|+|||+++|++|+++++|+++|+++|
T Consensus 199 ------~~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~---~vvDt~GAGDaf~ag~l~~l~~g~~~~~al~~a~~~A 269 (284)
T cd01945 199 ------ASLGIPFVAVTLGEAGCLWLERDGELFHVPAFPV---EVVDTTGAGDVFHGAFAHALAEGMPLREALRFASAAA 269 (284)
T ss_pred ------HhcCCcEEEEEECCCCeEEEcCCCCEEecCCCcc---ccccCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 567889999999999999998 677888887654 8999999999999999999999999999999999999
Q ss_pred hhhhhhcccc
Q 019448 324 HVIIQRSGCT 333 (341)
Q Consensus 324 a~~v~~~g~~ 333 (341)
+++|++.|+.
T Consensus 270 a~~~~~~G~~ 279 (284)
T cd01945 270 ALKCRGLGGR 279 (284)
T ss_pred HHHHhccCCc
Confidence 9999999984
No 15
>PLN02967 kinase
Probab=100.00 E-value=5e-43 Score=330.78 Aligned_cols=313 Identities=15% Similarity=0.175 Sum_probs=235.2
Q ss_pred CceEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEE
Q 019448 4 EGILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSY 83 (341)
Q Consensus 4 ~~~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~ 83 (341)
.+.|+|||++++|++..... -+.++....+....+..+++......+||+++|+|++|++ ||.++.|
T Consensus 196 ~~~V~~iGe~l~D~~p~g~~----------~~~l~~~~~~~~~~~~~s~~~~~~~~~GGa~aNVAvaLAR---LG~~v~f 262 (581)
T PLN02967 196 PPLVCCFGAAQHAFVPSGRP----------ANRLLDYEIHERMKDAFWAPEKFVRAPGGSAGGVAIALAS---LGGKVAF 262 (581)
T ss_pred CCeEEEECchhheecccCcc----------chhhhhccccccccccccCccceeeecCcHHHHHHHHHHH---CCCCEEE
Confidence 45799999999999774321 0000000001111122445677888999999999999998 5699999
Q ss_pred EeeeecCchhHHHHHHHHhcCcceeeee-cCCCCceeEEEEEe-CCcccee-ecccccccCCcccCCCcchhhhhccceE
Q 019448 84 IGCIGKDKFGEEMKKNSKLAGVNVHYYE-DESASTGTCAVCVV-GGERSLV-ANLSAANCYKSEHLKKPENWALVEKAKY 160 (341)
Q Consensus 84 i~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (341)
+|.||+|.+|+++++.|++.||+++++. ..+..|+.+++.++ +|+++++ ...+++..+.++++.. ..+.++++
T Consensus 263 Ig~VGdD~~G~~ll~~L~~~GVDts~v~~~~~~~Tgla~V~vd~~Gerr~~~~~~gAd~~L~~~di~~----~~l~~A~i 338 (581)
T PLN02967 263 MGKLGDDDYGQAMLYYLNVNKVQTRSVCIDGKRATAVSTMKIAKRGRLKTTCVKPCAEDSLSKSEINI----DVLKEAKM 338 (581)
T ss_pred EEEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCcEEEEEECCCCceEEEEecCChhhhCChhhcCH----hHhcCCCE
Confidence 9999999999999999999999999885 45667999988886 6777664 4567777788777763 56789999
Q ss_pred EEEecccc--ccCHHHHHHHHHHHHhCCCeEEEeCC--chhHH--HHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCC
Q 019448 161 FYIAGFFL--TVSPDSIQLVAEHAAANNKVFMMNLS--APFIC--EFFKDALEKVLPYMDYIFGNETEARTFSKVQGWET 234 (341)
Q Consensus 161 v~i~~~~~--~~~~~~~~~~~~~a~~~~~~v~~d~~--~~~~~--~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~ 234 (341)
+|++++.+ ..+.+.+..+++.++++|+++++|+. .+.|. ....+.+.++++++|+|++|++|+..|++......
T Consensus 339 ~hfgg~~ll~e~~~~all~alk~Ak~~Gv~VsFDpNlR~~lw~~~e~~~e~i~elL~~aDILk~NeeEl~~LtG~~~~~e 418 (581)
T PLN02967 339 FYFNTHSLLDPTMRSTTLRAIKISKKLGGVIFYDLNLPLPLWSSSEETKSFIQEAWNLADIIEVTKQELEFLCGIEPTEE 418 (581)
T ss_pred EEEeCchhcccchHHHHHHHHHHHHHCCCEEEEECCCCcccccchHHHHHHHHHHHHhCCEEEECHHHHHHHhCCCcccc
Confidence 99998753 22347889999999999999888874 34453 23456688999999999999999999987421000
Q ss_pred C------------CHHHHHHHHhcCCccccCCccEEEEEeCCCceEEEECCee---EEEeceecCCCcccCCCCCchhhH
Q 019448 235 D------------DVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKL---KKFPVIVLPKDKLVDTNGAGDAFV 299 (341)
Q Consensus 235 ~------------d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~---~~~~~~~~~~~~~vd~tGAGDaf~ 299 (341)
. ...+.+..+ +..+++.||||+|++|+++++++.. ..++++++ .+.+||||||||+|+
T Consensus 419 ~~~~~~~~~~~~~~~~e~a~~l------~~~g~k~VVVTlG~~Ga~~~~~~~~~~v~~~~a~~V-~V~vVDTTGAGDAF~ 491 (581)
T PLN02967 419 FDTKDNDKSKFVHYSPEVVAPL------WHENLKVLFVTNGTSKIHYYTKEHNGAVHGMEDAPI-TPFTSDMSASGDGIV 491 (581)
T ss_pred ccccccchhccccchHHHHHHH------HhCCCCEEEEEECccceEEEECCCceeEeeccCCCC-CCCCCCCCchhHHHH
Confidence 0 012334455 4557899999999999999987542 33344444 223699999999999
Q ss_pred HHHHHHHhcC-------CCHHHHHHHHHHHhhhhhhhccc--cCCCCCCC
Q 019448 300 GGFLSQLVQE-------KPIEECVRAGCYTSHVIIQRSGC--TYPEKPEF 340 (341)
Q Consensus 300 ag~~~~l~~g-------~~~~~a~~~a~~~Aa~~v~~~g~--~~p~~~~~ 340 (341)
|||+++|+++ +++++|+++|+++||++++..|+ .+|+.+++
T Consensus 492 AGfL~~Ll~g~~~~~g~~~LeeaLrfAnAaAAL~vt~~GA~~glPt~~eV 541 (581)
T PLN02967 492 AGLMRMLTVQPHLITDKGYLEKTIKYAIDCGVIDQWLLARTRGFPPKEDM 541 (581)
T ss_pred HHHHHHHHhccCcccccccHHHHHHHHHHHHHHHhccCCCccCCCCHHHH
Confidence 9999999984 67999999999999999999999 77776543
No 16
>PLN02323 probable fructokinase
Probab=100.00 E-value=1.4e-42 Score=316.42 Aligned_cols=294 Identities=23% Similarity=0.310 Sum_probs=232.9
Q ss_pred CCceEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEE
Q 019448 3 QEGILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATS 82 (341)
Q Consensus 3 ~~~~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~ 82 (341)
++.+|+++|++++|++..++ +.|. ........++||++.|+|.++++ +|.++.
T Consensus 9 ~~~~i~~iG~~~vD~~~~~~--------------------~~~~----~~~~~~~~~~GG~~~NvA~~la~---LG~~~~ 61 (330)
T PLN02323 9 ESSLVVCFGEMLIDFVPTVS--------------------GVSL----AEAPAFKKAPGGAPANVAVGISR---LGGSSA 61 (330)
T ss_pred CCCcEEEechhhhhhccCCC--------------------CCCc----ccccceeecCCChHHHHHHHHHh---cCCcee
Confidence 46789999999999998665 2232 12345578999999999999997 469999
Q ss_pred EEeeeecCchhHHHHHHHHhcCcceeeee-cCCCCceeEEEEEe-CCccceeecc--cccccCCcccCCCcchhhhhccc
Q 019448 83 YIGCIGKDKFGEEMKKNSKLAGVNVHYYE-DESASTGTCAVCVV-GGERSLVANL--SAANCYKSEHLKKPENWALVEKA 158 (341)
Q Consensus 83 ~i~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~-~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~ 158 (341)
++|.+|+|.+|+++++.|++.||+++++. .++.+|+.+++..+ +|+|+++.+. +++..+++++++. ..+..+
T Consensus 62 ~i~~vG~D~~g~~i~~~L~~~GI~~~~v~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 137 (330)
T PLN02323 62 FIGKVGDDEFGHMLADILKKNGVNNEGVRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLRESELDL----DLIRKA 137 (330)
T ss_pred EEEEecCChhHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCceeEEeecCCchhccCChHHCCh----HHHccC
Confidence 99999999999999999999999999875 45567888877775 7888877653 4444677776653 457889
Q ss_pred eEEEEecccccc--CHHHHHHHHHHHHhCCCeEEEeCCch--hHH--HHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCC
Q 019448 159 KYFYIAGFFLTV--SPDSIQLVAEHAAANNKVFMMNLSAP--FIC--EFFKDALEKVLPYMDYIFGNETEARTFSKVQGW 232 (341)
Q Consensus 159 ~~v~i~~~~~~~--~~~~~~~~~~~a~~~~~~v~~d~~~~--~~~--~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~ 232 (341)
++++++++.... ....+..+++.+++.|.++++|+... .|. ...++.+.++++++|++++|++|+..+++..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~g~~-- 215 (330)
T PLN02323 138 KIFHYGSISLITEPCRSAHLAAMKIAKEAGALLSYDPNLRLPLWPSAEAAREGIMSIWDEADIIKVSDEEVEFLTGGD-- 215 (330)
T ss_pred CEEEEechhccCchHHHHHHHHHHHHHHcCCEEEEcCCCChhhccCHHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCC--
Confidence 999988765321 22556788899999999999999632 221 2245557788999999999999999998642
Q ss_pred CCCCHHHHHHHHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCC-
Q 019448 233 ETDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKP- 311 (341)
Q Consensus 233 ~~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~- 311 (341)
..+..++. ++ +..|++.+|||+|++|++++++++.+++|++++ +++|||||||+|+|||++++++|++
T Consensus 216 -~~~~~~~~-~~------~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v---~vvDttGAGDaf~Agfl~~l~~g~~~ 284 (330)
T PLN02323 216 -DPDDDTVV-KL------WHPNLKLLLVTEGEEGCRYYTKDFKGRVEGFKV---KAVDTTGAGDAFVGGLLSQLAKDLSL 284 (330)
T ss_pred -CccHHHHH-HH------HhcCCCEEEEecCCCceEEEeCCCceEeCCccC---CCCCCCCcHHHHHHHHHHHHHcCCcc
Confidence 12233333 33 345789999999999999998887778887755 8899999999999999999999986
Q ss_pred ------HHHHHHHHHHHhhhhhhhccc--cCCCCCCC
Q 019448 312 ------IEECVRAGCYTSHVIIQRSGC--TYPEKPEF 340 (341)
Q Consensus 312 ------~~~a~~~a~~~Aa~~v~~~g~--~~p~~~~~ 340 (341)
+++|+++|+++|+++|++.|+ .+|+.+|+
T Consensus 285 ~~~~~~l~~al~~a~a~Aa~~v~~~g~~~~~~~~~~v 321 (330)
T PLN02323 285 LEDEERLREALRFANACGAITTTERGAIPALPTKEAV 321 (330)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccCCccCCCCHHHH
Confidence 899999999999999999999 56766553
No 17
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.8e-43 Score=315.45 Aligned_cols=295 Identities=29% Similarity=0.405 Sum_probs=242.7
Q ss_pred eEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEEEe
Q 019448 6 ILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i~ 85 (341)
+|+++|++++|++....+ .+|..++..........+||++.|+|+++++ +|.++.|+|
T Consensus 1 ~v~~iG~~~vD~~~~~~~-------------------~~~~~~~~~~~~~~~~~~GG~~~N~A~~~a~---lG~~~~~~~ 58 (311)
T COG0524 1 DVVVIGEANVDLIAQVVD-------------------RLPEPGETVLGDFFKVAGGGKGANVAVALAR---LGAKVALIG 58 (311)
T ss_pred CEEEECchhhheehhhcc-------------------CCCCCcccccccceeecCCchHHHHHHHHHH---cCCceEEEE
Confidence 489999999999996332 4555555555555788999999999999997 469999999
Q ss_pred eeecCchhHHHHHHHHhcCcceeeeec-CCCCceeEEEEEe-CCccceeeccc-ccccCCcccCCCcchhhhhccceEEE
Q 019448 86 CIGKDKFGEEMKKNSKLAGVNVHYYED-ESASTGTCAVCVV-GGERSLVANLS-AANCYKSEHLKKPENWALVEKAKYFY 162 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~~-~~~~t~~~~~~~~-~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~v~ 162 (341)
.||+|.+|+.+++.|++.||+++++.. ...+|+.+++.++ +|+|.+..+.+ +...+.++.+.. ..+...+++|
T Consensus 59 ~vG~D~~g~~~~~~l~~~GVd~~~~~~~~~~~tg~~~i~~~~~g~r~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~ 134 (311)
T COG0524 59 AVGDDDFGEFLLEELRKEGVDTSHVVTDEGATTGLALILVDEDGERTFVFYRGAAALLLTPEDLDE----DELAGADVLH 134 (311)
T ss_pred EecCcHHHHHHHHHHHHcCCccceEEEcCCCcceEEEEEEcCCCceeEEEECCcccccCChHHcCh----HHHhhcCeee
Confidence 999999999999999999999998854 4447888888886 68999988877 455677777763 5678999999
Q ss_pred EeccccccCHHHHHHHHHHHHhCCCeEEEeCCc--hhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCCHHHH
Q 019448 163 IAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSA--PFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEI 240 (341)
Q Consensus 163 i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~--~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~~~~ 240 (341)
++++.+..+++.+..+++.+++++.++.+|+.. ..|. .+.+.++++++|++++|++|++.+++. ..+..+.
T Consensus 135 ~~~~~l~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~---~~~~~~~l~~~d~~~~n~~E~~~l~g~----~~~~~~~ 207 (311)
T COG0524 135 ISGIQLEIPPEALLAALELAKAAGVTVSFDLNPRPALWD---RELLEELLALADILFPNEEEAELLTGL----EEDAEAA 207 (311)
T ss_pred EEEeecCCChHHHHHHHHHHHHcCCeEEEecCCCccccc---hhhHHHHHhhCCEEeCCHHHHHHHhCC----CccHHHH
Confidence 999988777799999999999999986666543 3332 466889999999999999999999873 2455555
Q ss_pred HHHHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHHHHH
Q 019448 241 ALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGC 320 (341)
Q Consensus 241 ~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~~a~ 320 (341)
...+ +..+++.+|+|+|++|+.+++.+...+++..+.++++++|||||||+|.|||++++++|+++++|+++|+
T Consensus 208 ~~~~------~~~~~~~vvvt~G~~Ga~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agfl~~~~~g~~~~~a~~~a~ 281 (311)
T COG0524 208 AALL------LAKGVKTVVVTLGAEGAVVFTGGGEVTVPVPAAFKVKVVDTTGAGDAFAAGFLAGLLEGKSLEEALRFAN 281 (311)
T ss_pred HHHH------hhcCCCEEEEEeCCCcEEEEeCCCceeeccCCCCccccccCCCchHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5555 6778999999999999999987553555544455669999999999999999999999999999999999
Q ss_pred HHhhhhhhhcccc--CCCCCC
Q 019448 321 YTSHVIIQRSGCT--YPEKPE 339 (341)
Q Consensus 321 ~~Aa~~v~~~g~~--~p~~~~ 339 (341)
++|++++++.|+. +|..++
T Consensus 282 a~aa~~~~~~g~~~~~p~~~~ 302 (311)
T COG0524 282 AAAALAVTRPGARPSLPTREE 302 (311)
T ss_pred HHhhhhhccCCCCCCCCCHHH
Confidence 9999999999995 555544
No 18
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=100.00 E-value=1.5e-42 Score=311.43 Aligned_cols=288 Identities=26% Similarity=0.377 Sum_probs=242.7
Q ss_pred cCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEEEeeeecC
Q 019448 11 GNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKD 90 (341)
Q Consensus 11 G~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i~~vG~D 90 (341)
|.+++|++..++ ++|..++..+..+...++||.+.|+|.++++ +|.++.++|.+|+|
T Consensus 1 G~~~~D~~~~~~--------------------~~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~---lg~~~~~~~~vG~D 57 (293)
T TIGR02152 1 GSINMDLVLRTD--------------------RLPKPGETVHGHSFQIGPGGKGANQAVAAAR---LGAEVSMIGKVGDD 57 (293)
T ss_pred CCceEeEEEEeC--------------------CCCCCCCcEecCCceecCCCcHHHHHHHHHH---CCCCEEEEEEecCC
Confidence 788999999887 6788888888888899999999999999997 46999999999999
Q ss_pred chhHHHHHHHHhcCcceeeeec-CCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchhhhhccceEEEEecccc
Q 019448 91 KFGEEMKKNSKLAGVNVHYYED-ESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFL 168 (341)
Q Consensus 91 ~~g~~i~~~l~~~gi~~~~~~~-~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~i~~~~~ 168 (341)
.+|+.+++.|++.||+++++.. .+.+|+.++++.+ +|+|+++.+.++...+.++++.. ..+.+..+|++++++
T Consensus 58 ~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--- 132 (293)
T TIGR02152 58 AFGDELLENLKSNGIDTEYVGTVKDTPTGTAFITVDDTGENRIVVVAGANAELTPEDIDA--AEALIAESDIVLLQL--- 132 (293)
T ss_pred ccHHHHHHHHHHcCCCeeEEEEcCCCCCceEEEEEcCCCCEEEEEECCcCCcCCHHHHHH--HHhhhccCCEEEEec---
Confidence 9999999999999999999864 4567888888876 58888877766666666666643 234678999999874
Q ss_pred ccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCCHHHHHHHHhcCC
Q 019448 169 TVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWP 248 (341)
Q Consensus 169 ~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~~~~~~~l~~~~ 248 (341)
+.+.+.+..+++.+++++.++++|+.... .....++++++|++++|++|+..+++....+.++.+++++.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~v~~D~~~~~-----~~~~~~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l---- 203 (293)
T TIGR02152 133 EIPLETVLEAAKIAKKHGVKVILNPAPAI-----KDLDDELLSLVDIITPNETEAEILTGIEVTDEEDAEKAAEKL---- 203 (293)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEECCcCc-----ccchHHHHhcCCEEccCHHHHHHHhCCCCCCcchHHHHHHHH----
Confidence 45678889999999999999999997532 111257789999999999999999876444445677788887
Q ss_pred ccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHHHHHHHhhhhhh
Q 019448 249 KASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQ 328 (341)
Q Consensus 249 ~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~~a~~~Aa~~v~ 328 (341)
.+.|++.+|||+|++|+.++++++.+++|++++ +++||+||||+|+|||++++++|+++++|+++|+.+|+.+++
T Consensus 204 --~~~g~~~vvvt~G~~g~~~~~~~~~~~~~~~~~---~~vdt~GAGDaf~Ag~l~~l~~g~~~~~al~~a~~~Aa~~~~ 278 (293)
T TIGR02152 204 --LEKGVKNVIITLGSKGALLVSKDESKLIPAFKV---KAVDTTAAGDTFNGAFAVALAEGKSLEDAIRFANAAAAISVT 278 (293)
T ss_pred --HHcCCCeEEEEeCCCceEEEeCCceeEccCCCC---ceeCCCCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc
Confidence 567889999999999999998888888776654 789999999999999999999999999999999999999999
Q ss_pred hcccc--CCCCCCC
Q 019448 329 RSGCT--YPEKPEF 340 (341)
Q Consensus 329 ~~g~~--~p~~~~~ 340 (341)
+.|+. +|+.+++
T Consensus 279 ~~G~~~~~~~~~~~ 292 (293)
T TIGR02152 279 RKGAQSSIPYLEEV 292 (293)
T ss_pred ccCcccCCCChHHc
Confidence 99995 4887775
No 19
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=100.00 E-value=3.8e-42 Score=310.30 Aligned_cols=283 Identities=23% Similarity=0.336 Sum_probs=227.4
Q ss_pred ceEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEEE
Q 019448 5 GILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYI 84 (341)
Q Consensus 5 ~~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i 84 (341)
.+|+++|++++|++...+ ......+||++.|+|.++++ ||.++.++
T Consensus 3 ~~il~iG~~~iD~~~~~~-------------------------------~~~~~~~GG~~~N~a~~l~~---LG~~~~~v 48 (304)
T PRK09434 3 NKVWVLGDAVVDLIPEGE-------------------------------NRYLKCPGGAPANVAVGIAR---LGGESGFI 48 (304)
T ss_pred CcEEEecchheeeecCCC-------------------------------CceeeCCCChHHHHHHHHHH---cCCCceEE
Confidence 489999999999985311 22356899999999999997 46999999
Q ss_pred eeeecCchhHHHHHHHHhcCcceeeee-cCCCCceeEEEEEe-CCccceeec--ccccccCCcccCCCcchhhhhccceE
Q 019448 85 GCIGKDKFGEEMKKNSKLAGVNVHYYE-DESASTGTCAVCVV-GGERSLVAN--LSAANCYKSEHLKKPENWALVEKAKY 160 (341)
Q Consensus 85 ~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~-~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (341)
|.+|+|.+|+++++.|++.||++.++. .++.+|+.+++..+ +|+|++... .++...+++++++ .+.+.++
T Consensus 49 ~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 122 (304)
T PRK09434 49 GRVGDDPFGRFMQQTLQDEGVDTTYLRLDPAHRTSTVVVDLDDQGERSFTFMVRPSADLFLQPQDLP------PFRQGEW 122 (304)
T ss_pred EEecCchHHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCCEeEEEecCCchhhhCCHHHhh------hhcCCCE
Confidence 999999999999999999999999875 45667888877776 478875432 2333334444443 2678999
Q ss_pred EEEeccccccC--HHHHHHHHHHHHhCCCeEEEeCCch--hHH--HHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCC
Q 019448 161 FYIAGFFLTVS--PDSIQLVAEHAAANNKVFMMNLSAP--FIC--EFFKDALEKVLPYMDYIFGNETEARTFSKVQGWET 234 (341)
Q Consensus 161 v~i~~~~~~~~--~~~~~~~~~~a~~~~~~v~~d~~~~--~~~--~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~ 234 (341)
+|++++....+ .+...++++.+++++.++.+|+... .|. ...++.++++++++|++++|++|+..+++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~e~~~l~g~----- 197 (304)
T PRK09434 123 LHLCSIALSAEPSRSTTFEAMRRIKAAGGFVSFDPNLREDLWQDEAELRECLRQALALADVVKLSEEELCFLSGT----- 197 (304)
T ss_pred EEEccccccCchHHHHHHHHHHHHHHcCCEEEECCCCChhhccCHHHHHHHHHHHHHhcceeeCCHHHHHHHhCC-----
Confidence 99988654323 3566788899999999999998642 221 234566778899999999999999999763
Q ss_pred CCHHHHHHHHhcCCcccc-CCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCC---
Q 019448 235 DDVEEIALKLSQWPKASE-IRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEK--- 310 (341)
Q Consensus 235 ~d~~~~~~~l~~~~~~~~-~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~--- 310 (341)
++.+++++.+ .+ .+++.+|||+|++|++++++++.+++|+++. +++|||||||+|+|||++++++|+
T Consensus 198 ~~~~~~~~~l------~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~---~~vDttGAGD~f~ag~~~~l~~g~~~~ 268 (304)
T PRK09434 198 SQLEDAIYAL------ADRYPIALLLVTLGAEGVLVHTRGQVQHFPAPSV---DPVDTTGAGDAFVAGLLAGLSQAGLWT 268 (304)
T ss_pred CCHHHHHHHH------HhhcCCcEEEEEecCCceEEEeCCceeEeCCCCC---CCCcCCCchHHHHHHHHHHHHcCCCcc
Confidence 4677888887 33 4688999999999999998888888887654 889999999999999999999997
Q ss_pred ---CHHHHHHHHHHHhhhhhhhccc--cCCCCCCCC
Q 019448 311 ---PIEECVRAGCYTSHVIIQRSGC--TYPEKPEFN 341 (341)
Q Consensus 311 ---~~~~a~~~a~~~Aa~~v~~~g~--~~p~~~~~~ 341 (341)
++++|+++|+++|+++|++.|+ .+|..++++
T Consensus 269 ~~~~~~~a~~~a~~~Aa~~v~~~g~~~~~~~~~~~~ 304 (304)
T PRK09434 269 DEAELAEIIAQAQACGALATTAKGAMTALPNRQELE 304 (304)
T ss_pred chHHHHHHHHHHHHHHHHHHcccCCcCCCCChHHcC
Confidence 8999999999999999999996 678777763
No 20
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=100.00 E-value=5e-43 Score=315.67 Aligned_cols=291 Identities=26% Similarity=0.398 Sum_probs=236.1
Q ss_pred CceEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEE
Q 019448 4 EGILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSY 83 (341)
Q Consensus 4 ~~~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~ 83 (341)
|.+|+++|++++|++..++. + .+...+..+...++||++.|+|.+|++ ||.++.+
T Consensus 1 m~~v~~iG~~~iD~~~~~~~--------------------~--~~~~~~~~~~~~~~GG~~~n~a~~l~~---LG~~v~~ 55 (301)
T PF00294_consen 1 MKKVLVIGEVNIDIIGYVDR--------------------F--KGDLVRVSSVKRSPGGAGANVAIALAR---LGADVAL 55 (301)
T ss_dssp EEEEEEESEEEEEEEEESSS--------------------H--TTSEEEESEEEEEEESHHHHHHHHHHH---TTSEEEE
T ss_pred CCcEEEECccceEEEeecCC--------------------c--CCcceecceEEEecCcHHHHHHHHHHh---ccCcceE
Confidence 46899999999999998872 2 222335677889999999999999998 4699999
Q ss_pred EeeeecCchhHHHHHHHHhcCcceeeee-cCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchhhhhccceEE
Q 019448 84 IGCIGKDKFGEEMKKNSKLAGVNVHYYE-DESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYF 161 (341)
Q Consensus 84 i~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 161 (341)
+|.+|+|.+|+.+++.|++.||+++++. ..+.+|+.++++.+ +|+|++..+.+....++++++ .+..+.+++++
T Consensus 56 i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 131 (301)
T PF00294_consen 56 IGKVGDDFFGEIILEELKERGVDTSYIPRDGDEPTGRCLIIVDPDGERTFVFSPGANSDLTPDEL----DEEAIDEADIL 131 (301)
T ss_dssp EEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEEETTSEEEEEEEEGGGGGGGHHHH----HHHHHHTESEE
T ss_pred EeeccCcchhhhhhhccccccccccccccccccccceeEeeecccccceeeeccccccccccccc----cccccccccce
Confidence 9999999999999999999999999886 55568999988887 688988888777777766655 34678999999
Q ss_pred EEec-ccc-ccCHHHHHHHHHHHHhCCC--eEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCCH
Q 019448 162 YIAG-FFL-TVSPDSIQLVAEHAAANNK--VFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDV 237 (341)
Q Consensus 162 ~i~~-~~~-~~~~~~~~~~~~~a~~~~~--~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~ 237 (341)
++++ ... ..+.+.+..+.+.+++.+. ++..++.. .. .++.+.++++++|++++|++|+..+++... ++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~l~~~dil~~n~~E~~~l~~~~~---~~~ 204 (301)
T PF00294_consen 132 HLSGVSLPEGIPEDLLEALAKAAKKNGPFDPVFRDPSW---DD-LREDLKELLPYADILKPNEEEAEALTGSKI---DDP 204 (301)
T ss_dssp EEESGHCSTTSHHHHHHHHHHHHHHTTEEEEEEEGGGS---HH-HHHHHHHHHHTSSEEEEEHHHHHHHHTCST---SSH
T ss_pred eecccccccccccceeeecccccccccccccccccccc---cc-cchhhhhhccccchhccccccccccccccc---cch
Confidence 9999 332 3345667777777777773 34444433 22 456788888999999999999999988542 345
Q ss_pred HHHHHHHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHH
Q 019448 238 EEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVR 317 (341)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~ 317 (341)
+++.+.+.++ +..+++.+|+|+|++|++++++++.++++++ ++.+++|+|||||+|+|||++++++|+++++|++
T Consensus 205 ~~~~~~~~~l---~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~--~~~~vvdttGAGD~f~A~~i~~l~~~~~~~~a~~ 279 (301)
T PF00294_consen 205 EDALAALREL---QARGVKIVIVTLGEDGALYYTNDESYHVPPV--PPVNVVDTTGAGDAFAAGFIYGLLSGMSLEEALK 279 (301)
T ss_dssp HHHHHHHHHH---HHTTSSEEEEEEGGGEEEEEETTEEEEEEEE--SSSSSSSCTTHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred hhhhcccccc---chhhhhhhhccccccCccccccccccccccc--ccccccceeccchhhhHHHHHHHHcCCCHHHHHH
Confidence 5554444221 4578899999999999999999999998876 3459999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhccccCC
Q 019448 318 AGCYTSHVIIQRSGCTYP 335 (341)
Q Consensus 318 ~a~~~Aa~~v~~~g~~~p 335 (341)
+|+++|+++|++.|+..|
T Consensus 280 ~a~~~aa~~v~~~g~~~~ 297 (301)
T PF00294_consen 280 FANAAAALKVQQPGPRSP 297 (301)
T ss_dssp HHHHHHHHHHTSSSSSGG
T ss_pred HHHHHHHHHhCCCCCcCC
Confidence 999999999999999544
No 21
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=3.8e-42 Score=306.68 Aligned_cols=277 Identities=22% Similarity=0.264 Sum_probs=225.1
Q ss_pred eEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEEEe
Q 019448 6 ILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i~ 85 (341)
+|+|+|++++|++..++ ++|..++..+..+....+||++.|+|.++++ ||.++.++|
T Consensus 1 ~v~~iG~~~~D~~~~v~--------------------~~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~---lg~~~~~~~ 57 (279)
T cd01942 1 DVAVVGHLNYDIILKVE--------------------SFPGPFESVLVKDLRREFGGSAGNTAVALAK---LGLSPGLVA 57 (279)
T ss_pred CEEEEecceeeeEeecc--------------------cCCCCCceEecceeeecCCcHHHHHHHHHHH---cCCCceEEE
Confidence 68999999999999887 6677667777888899999999999999997 469999999
Q ss_pred eeecCchhHHHHHHHHhcCcceeee-ecCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchhhhhccceEEEE
Q 019448 86 CIGKDKFGEEMKKNSKLAGVNVHYY-EDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYI 163 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~-~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~i 163 (341)
.+|+|.+|+.+++.|++.||+++++ ...+.+|+.++++.+ +++|.++...++...+++++ . ...+.+++++|+
T Consensus 58 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~ 132 (279)
T cd01942 58 AVGEDFHGRLYLEELREEGVDTSHVRVVDEDSTGVAFILTDGDDNQIAYFYPGAMDELEPND-E----ADPDGLADIVHL 132 (279)
T ss_pred EecCCcchHHHHHHHHHcCCCccceEEcCCCCcceEEEEEcCCCCEEEEecCCcccccccCC-c----hhhhcccCEEEe
Confidence 9999999999999999999999998 455667888887776 56777665666665666554 2 246789999999
Q ss_pred eccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCCHHHHHHH
Q 019448 164 AGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALK 243 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~~~~~~~ 243 (341)
++.. .+.++++.+++.+.++++|+.... .....+.++++++++|++++|++|+..+....+. .+..
T Consensus 133 ~~~~------~~~~~~~~~~~~g~~v~~D~~~~~-~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~--~~~~----- 198 (279)
T cd01942 133 SSGP------GLIELARELAAGGITVSFDPGQEL-PRLSGEELEEILERADILFVNDYEAELLKERTGL--SEAE----- 198 (279)
T ss_pred CCch------HHHHHHHHHHHcCCeEEEcchhhh-hhccHHHHHHHHhhCCEEecCHHHHHHHHhhcCC--ChHH-----
Confidence 8642 467777888888999999997532 1113355778899999999999999644322211 1111
Q ss_pred HhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHHHHHHHh
Q 019448 244 LSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTS 323 (341)
Q Consensus 244 l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~~a~~~A 323 (341)
...+++.+|+|+|++|++++++++.+++|++ ++++++|||||||+|+|||+++|++|+++++|+++|+++|
T Consensus 199 -------~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~--~~~~vvDttGAGDaf~a~~i~~l~~g~~l~~al~~a~~~A 269 (279)
T cd01942 199 -------LASGVRVVVVTLGPKGAIVFEDGEEVEVPAV--PAVKVVDTTGAGDAFRAGFLYGLLRGYDLEESLRLGNLAA 269 (279)
T ss_pred -------HhcCCCEEEEEECCCceEEEECCceEEccCc--CcCCCcCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1146789999999999999998888888876 2348999999999999999999999999999999999999
Q ss_pred hhhhhhcccc
Q 019448 324 HVIIQRSGCT 333 (341)
Q Consensus 324 a~~v~~~g~~ 333 (341)
+++++++|++
T Consensus 270 a~~~~~~G~~ 279 (279)
T cd01942 270 SLKVERRGAQ 279 (279)
T ss_pred HHHHcccCCC
Confidence 9999999863
No 22
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=100.00 E-value=9.2e-42 Score=306.62 Aligned_cols=278 Identities=24% Similarity=0.325 Sum_probs=227.6
Q ss_pred eEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEEEe
Q 019448 6 ILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i~ 85 (341)
||+|+|++++|++...+ +. ..+....+||.+.|+|.++++ +|.++.++|
T Consensus 1 ~ilviG~~~~D~~~~~~--------------------~~--------~~~~~~~~GG~~~n~a~~l~~---lg~~v~~i~ 49 (295)
T cd01167 1 KVVCFGEALIDFIPEGS--------------------GA--------PETFTKAPGGAPANVAVALAR---LGGKAAFIG 49 (295)
T ss_pred CEEEEcceeEEEecCCC--------------------CC--------CccccccCCCcHHHHHHHHHh---cCCCeEEEE
Confidence 68999999999998664 11 456678999999999999997 469999999
Q ss_pred eeecCchhHHHHHHHHhcCcceeeee-cCCCCceeEEEEEe-CCccceeecccccccCCccc-CCCcchhhhhccceEEE
Q 019448 86 CIGKDKFGEEMKKNSKLAGVNVHYYE-DESASTGTCAVCVV-GGERSLVANLSAANCYKSEH-LKKPENWALVEKAKYFY 162 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~v~ 162 (341)
.+|+|.+|+.+++.|++.||++.++. ..+.+|+.++++++ +|+|++....+.......+. +. ...++++++++
T Consensus 50 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~ 125 (295)
T cd01167 50 KVGDDEFGDFLLETLKEAGVDTRGIQFDPAAPTTLAFVTLDADGERSFEFYRGPAADLLLDTELN----PDLLSEADILH 125 (295)
T ss_pred eecCcHHHHHHHHHHHHcCCCchheeecCCCCceEEEEEECCCCCEeEEeecCCcHhhhcCccCC----hhHhccCCEEE
Confidence 99999999999999999999999885 56778999988886 78888776655433222221 21 25678899999
Q ss_pred Eecccccc--CHHHHHHHHHHHHhCCCeEEEeCCch--hHH--HHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCC
Q 019448 163 IAGFFLTV--SPDSIQLVAEHAAANNKVFMMNLSAP--FIC--EFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDD 236 (341)
Q Consensus 163 i~~~~~~~--~~~~~~~~~~~a~~~~~~v~~d~~~~--~~~--~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d 236 (341)
++++.... ..+.+.++++.+++.+.++++|+... .|. ....+.+.++++++|++++|++|+..+++. .+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~-----~~ 200 (295)
T cd01167 126 FGSIALASEPSRSALLELLEAAKKAGVLISFDPNLRPPLWRDEEEARERIAELLELADIVKLSDEELELLFGE-----ED 200 (295)
T ss_pred EechhhccchHHHHHHHHHHHHHHcCCEEEEcCCCChhhcCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCC-----CC
Confidence 98753211 23668889999999999999999642 232 123555788999999999999999998763 34
Q ss_pred HHHHHHHHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCC------
Q 019448 237 VEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEK------ 310 (341)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~------ 310 (341)
..++++.+ ...+++.+|||+|++|++++++++.+++|+++. +++|||||||+|+|||+++|++|+
T Consensus 201 ~~~~~~~l------~~~g~~~vvvt~G~~G~~~~~~~~~~~~~a~~~---~vvDttGAGD~f~a~~~~~l~~g~~~~~~~ 271 (295)
T cd01167 201 PEEIAALL------LLFGLKLVLVTRGADGALLYTKGGVGEVPGIPV---EVVDTTGAGDAFVAGLLAQLLSRGLLALDE 271 (295)
T ss_pred HHHHHHHH------hhcCCCEEEEecCCcceEEEECCcceeeCCCCc---ceeeCCCccHHHHHHHHHHHHhCCcccccH
Confidence 56677777 567899999999999999999888888887754 899999999999999999999999
Q ss_pred -CHHHHHHHHHHHhhhhhhhccc
Q 019448 311 -PIEECVRAGCYTSHVIIQRSGC 332 (341)
Q Consensus 311 -~~~~a~~~a~~~Aa~~v~~~g~ 332 (341)
++++|+++|+++|+++|+++|+
T Consensus 272 ~~~~~a~~~a~~~aa~~~~~~G~ 294 (295)
T cd01167 272 DELAEALRFANAVGALTCTKAGA 294 (295)
T ss_pred HHHHHHHHHHHHhhHHHhcccCC
Confidence 9999999999999999999986
No 23
>PRK09954 putative kinase; Provisional
Probab=100.00 E-value=4.5e-42 Score=316.63 Aligned_cols=290 Identities=15% Similarity=0.170 Sum_probs=223.2
Q ss_pred CceEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEE
Q 019448 4 EGILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSY 83 (341)
Q Consensus 4 ~~~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~ 83 (341)
...|+|+|.+++|++..++. ++|..++ +.......+||++.|+|+++++ ||.++.|
T Consensus 57 ~~~v~viG~~~vD~~~~~~~-------------------~~p~~~~--~~~~~~~~~GG~~~NvA~~lar---LG~~v~~ 112 (362)
T PRK09954 57 QEYCVVVGAINMDIRGMADI-------------------RYPQAAS--HPGTIHCSAGGVGRNIAHNLAL---LGRDVHL 112 (362)
T ss_pred CccEEEEEEEEEEEEEeeCC-------------------cCcCCCC--CCceEEEecCcHHHHHHHHHHH---cCCCeEE
Confidence 34789999999999987752 2344333 4456778899999999999998 5699999
Q ss_pred EeeeecCchhHHHHHHHHhcCcceeeee-cCCCCceeEEEEEeCCccceeeccc--ccccCCcccCCCcchhhhhccceE
Q 019448 84 IGCIGKDKFGEEMKKNSKLAGVNVHYYE-DESASTGTCAVCVVGGERSLVANLS--AANCYKSEHLKKPENWALVEKAKY 160 (341)
Q Consensus 84 i~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~ 160 (341)
+|.||+|.+|+.+++.|++.||+++++. .++.+|+.++.+.+.++++++...+ ....++++.+.. ....+..+++
T Consensus 113 ig~VG~D~~G~~i~~~l~~~GVd~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 190 (362)
T PRK09954 113 LSAIGDDFYGETLLEETRRAGVNVSGCIRLHGQSTSTYLAIANRQDETVLAINDTHILQQLTPQLLNG--SRDLIRHAGV 190 (362)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCccceEEcCCCCCeEEEEEEcCCCCEEEEEcCchhhhcCCHHHHHH--HHHHHhcCCE
Confidence 9999999999999999999999999874 5566788877766655565554432 223455444432 2244678899
Q ss_pred EEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCCHHHH
Q 019448 161 FYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEI 240 (341)
Q Consensus 161 v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~~~~ 240 (341)
+++++ +.+++.+..+++.+ +++++++|+.+.. ..+.++++++++|++++|++|++.+++....+.++.+++
T Consensus 191 v~~~~---~~~~~~~~~~~~~a--~~~~v~~D~~~~~----~~~~~~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~ 261 (362)
T PRK09954 191 VLADC---NLTAEALEWVFTLA--DEIPVFVDTVSEF----KAGKIKHWLAHIHTLKPTQPELEILWGQAITSDADRNAA 261 (362)
T ss_pred EEEEC---CCCHHHHHHHHHhC--CCCcEEEECCCHH----HhhhhhhhhccccEEecCHHHHHHHcCCCCCCHHHHHHH
Confidence 98875 34566666666654 4788999997643 123366789999999999999999987433223345577
Q ss_pred HHHHhcCCccccCCccEEEEEeCCCceEEEECC-eeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHHHH
Q 019448 241 ALKLSQWPKASEIRKRTAVITQGADPVVVAQDG-KLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAG 319 (341)
Q Consensus 241 ~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~-~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~~a 319 (341)
++.+ .+.|++.||||+|++|+++++.+ ..+++|++++ +++|||||||+|+|||++++++|+++++|+++|
T Consensus 262 ~~~l------~~~g~~~Vvvt~G~~G~~~~~~~~~~~~~~~~~v---~vvDttGAGDaF~Ag~l~~l~~g~~~~eal~~a 332 (362)
T PRK09954 262 VNAL------HQQGVQQIFVYLPDESVFCSEKDGEQFLLTAPAH---TTVDSFGADDGFMAGLVYSFLEGYSFRDSARFA 332 (362)
T ss_pred HHHH------HHcCCCEEEEEeCCccEEEEeCCCceEeccCCCc---ccccccchHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 7777 66789999999999999988754 4566666544 899999999999999999999999999999999
Q ss_pred HHHhhhhhhhccccCCCC
Q 019448 320 CYTSHVIIQRSGCTYPEK 337 (341)
Q Consensus 320 ~~~Aa~~v~~~g~~~p~~ 337 (341)
+++|++++.+..+..|+.
T Consensus 333 ~a~Aal~~~s~~~~~~~~ 350 (362)
T PRK09954 333 MACAAISRASGSLNNPTL 350 (362)
T ss_pred HHHHHHHhcCCCcCCCcC
Confidence 999999988777766664
No 24
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=100.00 E-value=1.1e-41 Score=305.99 Aligned_cols=283 Identities=25% Similarity=0.348 Sum_probs=226.6
Q ss_pred eEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEEEe
Q 019448 6 ILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i~ 85 (341)
+|+|+|++++|++...++ +..........+||++.|+|+++++ +|.++.++|
T Consensus 1 ~i~~iG~~~iD~~~~~~~-------------------------~~~~~~~~~~~~GG~~~N~a~~la~---lg~~~~~i~ 52 (294)
T cd01166 1 DVVTIGEVMVDLSPPGGG-------------------------RLEQADSFRKFFGGAEANVAVGLAR---LGHRVALVT 52 (294)
T ss_pred CeEEechhheeeecCCCC-------------------------ccchhhccccccCChHHHHHHHHHh---cCCceEEEE
Confidence 589999999999875541 1234456678999999999999997 469999999
Q ss_pred eeecCchhHHHHHHHHhcCcceeee-ecCCCCceeEEEEEe-CCccceeeccc--ccccCCcccCCCcchhhhhccceEE
Q 019448 86 CIGKDKFGEEMKKNSKLAGVNVHYY-EDESASTGTCAVCVV-GGERSLVANLS--AANCYKSEHLKKPENWALVEKAKYF 161 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~-~~~~~~t~~~~~~~~-~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~v 161 (341)
.+|+|.+|+.+++.|++.||+++++ ...+.+|+.+++..+ +|+|+++.+.+ +...++.+++. ...+++++++
T Consensus 53 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v 128 (294)
T cd01166 53 AVGDDPFGRFILAELRREGVDTSHVRVDPGRPTGLYFLEIGAGGERRVLYYRAGSAASRLTPEDLD----EAALAGADHL 128 (294)
T ss_pred ecCCCHHHHHHHHHHHHcCCCCceEEEeCCCcceEEEEEecCCCCceEEEeCCCChhHhCChhhCC----HHHHhCCCEE
Confidence 9999999999999999999999998 456667888888776 47887766532 33455555554 2567899999
Q ss_pred EEeccccccCH---HHHHHHHHHHHhCCCeEEEeCCchhH---HHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCC
Q 019448 162 YIAGFFLTVSP---DSIQLVAEHAAANNKVFMMNLSAPFI---CEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETD 235 (341)
Q Consensus 162 ~i~~~~~~~~~---~~~~~~~~~a~~~~~~v~~d~~~~~~---~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~ 235 (341)
|++++.+...+ +.+..+++.+++.+.++++|+..... .....+.++++++++|++++|++|++.+++..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~dil~~n~~E~~~l~~~~----- 203 (294)
T cd01166 129 HLSGITLALSESAREALLEALEAAKARGVTVSFDLNYRPKLWSAEEAREALEELLPYVDIVLPSEEEAEALLGDE----- 203 (294)
T ss_pred EEcCcchhhCHHHHHHHHHHHHHHHHcCCEEEECCCCcchhcChHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCC-----
Confidence 99987654333 67888999999999999999974321 12234556788999999999999999998642
Q ss_pred CHHHHHHHHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHH
Q 019448 236 DVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEEC 315 (341)
Q Consensus 236 d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a 315 (341)
...++.+.+.+ ++.+++.+|||+|++|++++++++.+++|++++ +++||+||||+|+|||+++|++|+++++|
T Consensus 204 ~~~~~~~~~~~----l~~g~~~viit~G~~G~~~~~~~~~~~~~~~~~---~~vdt~GAGD~f~a~~~~~l~~g~~~~~a 276 (294)
T cd01166 204 DPTDAAERALA----LALGVKAVVVKLGAEGALVYTGGGRVFVPAYPV---EVVDTTGAGDAFAAGFLAGLLEGWDLEEA 276 (294)
T ss_pred CchhHHHHHHh----hcCCccEEEEEEcCCceEEEECCceEEeCCCCc---ccccCCCchHHHHHHHHHHHHcCCCHHHH
Confidence 12233333321 135788999999999999999888888887654 78999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhccc
Q 019448 316 VRAGCYTSHVIIQRSGC 332 (341)
Q Consensus 316 ~~~a~~~Aa~~v~~~g~ 332 (341)
+++|+++|+.+|++.|+
T Consensus 277 ~~~a~~~aa~~i~~~G~ 293 (294)
T cd01166 277 LRFANAAAALVVTRPGD 293 (294)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999999999985
No 25
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=100.00 E-value=2.3e-42 Score=311.86 Aligned_cols=295 Identities=17% Similarity=0.208 Sum_probs=225.7
Q ss_pred eEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEEEe
Q 019448 6 ILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i~ 85 (341)
+|+++|++.+|+++.++.+. ++. +.+. ...........+|| +.|+|.++++ ||.++.++|
T Consensus 1 ~vl~iG~~~~D~~~~~~~~~---~~~-----------~~~~--~~~~~~~~~~~~GG-~~NvA~~la~---LG~~~~~i~ 60 (304)
T cd01172 1 KVLVVGDVILDEYLYGDVER---ISP-----------EAPV--PVVKVEREEIRLGG-AANVANNLAS---LGAKVTLLG 60 (304)
T ss_pred CEEEEcceeEEeeEeecccc---ccC-----------CCCc--ceEEeeeEEecCcH-HHHHHHHHHH---hCCCeEEEE
Confidence 68999999999998764111 000 0011 11122345678999 6899999998 469999999
Q ss_pred eeecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEeCCccceeecccccccCCcccCCC--cchhhhhccceEEEE
Q 019448 86 CIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKK--PENWALVEKAKYFYI 163 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~v~i 163 (341)
.+|+|.+|+.+++.|++.||+++++..++.+|+.++.+.+++++.+..+......++.+.... ......++++|++++
T Consensus 61 ~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 140 (304)
T cd01172 61 VVGDDEAGDLLRKLLEKEGIDTDGIVDEGRPTTTKTRVIARNQQLLRVDREDDSPLSAEEEQRLIERIAERLPEADVVIL 140 (304)
T ss_pred EEcCCccHHHHHHHHHhCCCCcceEecCCCCceEEEEEecCCcEEEEEecCCCCCCCHHHHHHHHHHHHHhhccCCEEEE
Confidence 999999999999999999999998666666688877776655555544433333333322111 112345789999999
Q ss_pred ecccc-ccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCCHHHHHH
Q 019448 164 AGFFL-TVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIAL 242 (341)
Q Consensus 164 ~~~~~-~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~~~~~~ 242 (341)
+++.. .++++.+..+++.+++.+.++++|+....+ ..++++|++++|++|++.+++....+.++++++++
T Consensus 141 s~~~~~~~~~~~~~~~~~~a~~~~~~v~~D~~~~~~---------~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~ 211 (304)
T cd01172 141 SDYGKGVLTPRVIEALIAAARELGIPVLVDPKGRDY---------SKYRGATLLTPNEKEAREALGDEINDDDELEAAGE 211 (304)
T ss_pred EcCCCCccCHHHHHHHHHHHHhcCCCEEEeCCCcch---------hhccCCcEeCCCHHHHHHHhCCCCCChHHHHHHHH
Confidence 87643 456788999999999999999999986531 56789999999999999998754333345666777
Q ss_pred HHhcCCccccCCccEEEEEeCCCceEEEE-CCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 019448 243 KLSQWPKASEIRKRTAVITQGADPVVVAQ-DGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCY 321 (341)
Q Consensus 243 ~l~~~~~~~~~~~~~vvvt~G~~G~~~~~-~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~~a~~ 321 (341)
.+. ...|++.+|||+|++|+++++ +++.+++|++++ +++|||||||+|+|||+++|++|+++++|+++|++
T Consensus 212 ~l~-----~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~---~vvdttGAGDaf~ag~i~~l~~g~~~~~al~~a~a 283 (304)
T cd01172 212 KLL-----ELLNLEALLVTLGEEGMTLFERDGEVQHIPALAK---EVYDVTGAGDTVIATLALALAAGADLEEAAFLANA 283 (304)
T ss_pred HHH-----HHhCCCeEEEEcCCCccEEEcCCCcEEEecCCCC---CCCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 662 235789999999999999998 777888887754 89999999999999999999999999999999999
Q ss_pred HhhhhhhhccccCCCC
Q 019448 322 TSHVIIQRSGCTYPEK 337 (341)
Q Consensus 322 ~Aa~~v~~~g~~~p~~ 337 (341)
+|+++|++.|+....+
T Consensus 284 ~Aa~~~~~~g~~~~~~ 299 (304)
T cd01172 284 AAGVVVGKVGTAPVTP 299 (304)
T ss_pred HhheeeecCCCCCcCH
Confidence 9999999999864443
No 26
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=100.00 E-value=1.8e-41 Score=299.92 Aligned_cols=261 Identities=19% Similarity=0.302 Sum_probs=212.7
Q ss_pred eEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEEEe
Q 019448 6 ILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i~ 85 (341)
+|+++|++++|++... ...++||++.|+|.++++ +|.++.++|
T Consensus 1 ~v~~iG~~~~D~~~~~----------------------------------~~~~~GG~~~Nva~~la~---lG~~~~~~~ 43 (264)
T cd01940 1 RLAAIGDNVVDKYLHL----------------------------------GKMYPGGNALNVAVYAKR---LGHESAYIG 43 (264)
T ss_pred CeEEEcceEEEEeccC----------------------------------ceecCCCcHHHHHHHHHH---cCCCeeEEe
Confidence 6899999999998621 357899999999999997 569999999
Q ss_pred eeecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEeCCccceeecc-cccccCCcccCCCcchhhhhccceEEEEe
Q 019448 86 CIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSLVANL-SAANCYKSEHLKKPENWALVEKAKYFYIA 164 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~v~i~ 164 (341)
.+|+|.+|+.+++.|++.||+++++...+.+|+.+++...+|+|+++.+. +......+... ....+.++|++|++
T Consensus 44 ~vG~D~~g~~i~~~l~~~gI~~~~v~~~~~~t~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~ 119 (264)
T cd01940 44 AVGNDDAGAHVRSTLKRLGVDISHCRVKEGENAVADVELVDGDRIFGLSNKGGVAREHPFEA----DLEYLSQFDLVHTG 119 (264)
T ss_pred cccCchhHHHHHHHHHHcCCChhheEEcCCCCceEEEEecCCceEEEeecCCcHHhcccCcc----cHhHHhcCCEEEEc
Confidence 99999999999999999999999886555678887755557888765543 32222222211 23457899999998
Q ss_pred ccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCCHHHHHHHH
Q 019448 165 GFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKL 244 (341)
Q Consensus 165 ~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~~~~~~~l 244 (341)
+.. +.+.+.++++.++++++++++|+.... ..+.+.++++++|++++|++|.. ..+..++++.+
T Consensus 120 ~~~---~~~~~~~~~~~a~~~g~~v~~D~~~~~----~~~~~~~~~~~~d~~~~~~~~~~---------~~~~~~~~~~l 183 (264)
T cd01940 120 IYS---HEGHLEKALQALVGAGALISFDFSDRW----DDDYLQLVCPYVDFAFFSASDLS---------DEEVKAKLKEA 183 (264)
T ss_pred ccc---cHHHHHHHHHHHHHcCCEEEEcCcccC----CHHHHHhhcccCCEEEechhhcC---------cchHHHHHHHH
Confidence 753 256788999999999999999997642 12336678999999999987642 23456677777
Q ss_pred hcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCC-HHHHHHHHHHHh
Q 019448 245 SQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKP-IEECVRAGCYTS 323 (341)
Q Consensus 245 ~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~-~~~a~~~a~~~A 323 (341)
...+++.+|||+|++|++++++++.+++|++++ +++|||||||+|+|||++++++|++ +++|+++|+++|
T Consensus 184 ------~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~~---~~vDttGAGDaf~ag~i~~l~~g~~~~~~al~~a~~~a 254 (264)
T cd01940 184 ------VSRGAKLVIVTRGEDGAIAYDGAVFYSVAPRPV---EVVDTLGAGDSFIAGFLLSLLAGGTAIAEAMRQGAQFA 254 (264)
T ss_pred ------HHcCCCEEEEEECCCCeEEEeCCeEEecCCcCC---CCCCCCCchHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 567889999999999999999888888887654 8899999999999999999999999 999999999999
Q ss_pred hhhhhhccc
Q 019448 324 HVIIQRSGC 332 (341)
Q Consensus 324 a~~v~~~g~ 332 (341)
++++++.|+
T Consensus 255 a~~~~~~G~ 263 (264)
T cd01940 255 AKTCGHEGA 263 (264)
T ss_pred HHHhcccCC
Confidence 999999986
No 27
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1.8e-41 Score=300.02 Aligned_cols=263 Identities=18% Similarity=0.289 Sum_probs=214.8
Q ss_pred eEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEEEe
Q 019448 6 ILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i~ 85 (341)
+|+++|++++|++..++ +.|.+++..+..+....+||++.|+|.++++ +|.++.++|
T Consensus 1 ~il~iG~~~iD~~~~~~--------------------~~~~~~~~~~~~~~~~~~GG~~~Nva~~l~~---lG~~~~~i~ 57 (265)
T cd01947 1 KIAVVGHVEWDIFLSLD--------------------APPQPGGISHSSDSRESPGGGGANVAVQLAK---LGNDVRFFS 57 (265)
T ss_pred CEEEEeeeeEEEEEEec--------------------CCCCCCceeecccceeecCchHHHHHHHHHH---cCCceEEEE
Confidence 68999999999999887 5677777778888899999999999999998 469999999
Q ss_pred eeecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchhhhhccceEEEEe
Q 019448 86 CIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIA 164 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~i~ 164 (341)
.+|+|.+|+.+++.|++ ++++.++...+..|+.++++++ +|+|+++...... ++++. +..+.++|++|++
T Consensus 58 ~vG~D~~g~~i~~~l~~-~~~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~----~~~~~----~~~~~~~~~~~~~ 128 (265)
T cd01947 58 NLGRDEIGIQSLEELES-GGDKHTVAWRDKPTRKTLSFIDPNGERTITVPGERL----EDDLK----WPILDEGDGVFIT 128 (265)
T ss_pred EecCChHHHHHHHHHHh-cCCcceEEecCCCCceEEEEECCCCcceEEecCCCC----cccCC----HhHhccCCEEEEe
Confidence 99999999999999999 9998887666667999888876 6888776543221 22222 2457899999998
Q ss_pred ccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCCHHHHHHHH
Q 019448 165 GFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKL 244 (341)
Q Consensus 165 ~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~~~~~~~l 244 (341)
+.. ...++++.+++.+ .+++|+.... ..+.+.++++++|++++|++|+..++. ++.+
T Consensus 129 ~~~------~~~~~~~~a~~~~-~~~~d~~~~~----~~~~~~~~~~~~d~~~~n~~e~~~l~~------------~~~~ 185 (265)
T cd01947 129 AAA------VDKEAIRKCRETK-LVILQVTPRV----RVDELNQALIPLDILIGSRLDPGELVV------------AEKI 185 (265)
T ss_pred ccc------ccHHHHHHHHHhC-CeEeccCccc----cchhHHHHhhhCCEEEeCHHHHHHhhh------------HHHH
Confidence 753 1245666777765 4556765432 123467889999999999999988752 3344
Q ss_pred hcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 019448 245 SQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSH 324 (341)
Q Consensus 245 ~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~~a~~~Aa 324 (341)
.+.+++.+|||+|++|+.++++++.++++++++ +++|+|||||+|.|||++++++|+++++|+++|+++|+
T Consensus 186 ------~~~~~~~viit~G~~Ga~~~~~~~~~~~~~~~~---~vvDttGAGDaF~ag~l~~l~~g~~~~~al~~a~~~Aa 256 (265)
T cd01947 186 ------AGPFPRYLIVTEGELGAILYPGGRYNHVPAKKA---KVPDSTGAGDSFAAGFIYGLLKGWSIEEALELGAQCGA 256 (265)
T ss_pred ------HhccCCEEEEEeCCCCeEEEECCeeEECCCCCC---CCCCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 456789999999999999999888888887654 89999999999999999999999999999999999999
Q ss_pred hhhhhccc
Q 019448 325 VIIQRSGC 332 (341)
Q Consensus 325 ~~v~~~g~ 332 (341)
+++++.|+
T Consensus 257 ~~v~~~G~ 264 (265)
T cd01947 257 ICVSHFGP 264 (265)
T ss_pred HHHhccCC
Confidence 99999986
No 28
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=100.00 E-value=9.1e-42 Score=307.93 Aligned_cols=289 Identities=18% Similarity=0.204 Sum_probs=230.9
Q ss_pred EEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEEEeee
Q 019448 8 LGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCI 87 (341)
Q Consensus 8 ~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i~~v 87 (341)
.|.=++.+|++..++ ++| +++.....+...++||.+.|+|+++++ +|.++.++|.+
T Consensus 3 ~~~~~~~~D~~~~~~--------------------~~~-~g~~~~~~~~~~~~GG~~~NvA~~la~---lG~~v~~is~v 58 (304)
T TIGR03828 3 TVTLNPAIDLTIELD--------------------GLT-LGEVNRVESTRIDAGGKGINVSRVLKN---LGVDVVALGFL 58 (304)
T ss_pred EEEcchHHeEEEEcc--------------------ccc-cCceeecccccccCCccHHHHHHHHHH---cCCCeEEEEEe
Confidence 355678899999988 677 777888888899999999999999997 46999999999
Q ss_pred ecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEe-CCccceeecccccccCCcccCCC--cchhhhhccceEEEEe
Q 019448 88 GKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKK--PENWALVEKAKYFYIA 164 (341)
Q Consensus 88 G~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~v~i~ 164 (341)
|+| +|+.+++.|++.||+++++... ..|+.++++.+ +|+++.+...+. .++++++.. ....+.+.+++++|++
T Consensus 59 G~D-~g~~~~~~L~~~gId~~~~~~~-~~t~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~v~~~ 134 (304)
T TIGR03828 59 GGF-TGDFIEALLREEGIKTDFVRVP-GETRINVKIKEPSGTETKLNGPGP--EISEEELEALLEKLRAQLAEGDWLVLS 134 (304)
T ss_pred cCc-hhHHHHHHHHHCCCcceEEECC-CCCeeeEEEEeCCCCEEEEECCCC--CCCHHHHHHHHHHHHHhccCCCEEEEE
Confidence 999 6999999999999999988654 35777766665 677766654442 344433322 0111357899999999
Q ss_pred cccc-ccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCCHHHHHHH
Q 019448 165 GFFL-TVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALK 243 (341)
Q Consensus 165 ~~~~-~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~~~~~~~ 243 (341)
++.. ..+++.+..+++.+++.+.++++|+..... .+.+....|++++|++|++.+++....+.++..++++.
T Consensus 135 g~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~-------~~~~~~~~~i~~~n~~E~~~l~g~~~~~~~~~~~~~~~ 207 (304)
T TIGR03828 135 GSLPPGVPPDFYAELIALAREKGAKVILDTSGEAL-------RDGLKAKPFLIKPNDEELEELFGRELKTLEEIIEAARE 207 (304)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEECChHHH-------HHHHhcCCcEECcCHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 8754 356788999999999999999999975421 11233457899999999999987543333455566777
Q ss_pred HhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHHHHHHHh
Q 019448 244 LSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTS 323 (341)
Q Consensus 244 l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~~a~~~A 323 (341)
+ ++.|++.+|||+|++|++++++++.++++++++ +++|||||||+|.|||+++|++|+++++|+++|+++|
T Consensus 208 l------~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~---~vvDttGAGDaF~a~~l~~l~~g~~~~~a~~~a~~~A 278 (304)
T TIGR03828 208 L------LDLGAENVLISLGADGALLVTKEGALFAQPPKG---EVVSTVGAGDSMVAGFLAGLESGLSLEEALRLAVAAG 278 (304)
T ss_pred H------HHcCCCEEEEccCCCCcEEEcCCceEEEeCCCc---cccCCcChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7 567889999999999999998887777776544 7899999999999999999999999999999999999
Q ss_pred hhhhhhccccCCCCCCC
Q 019448 324 HVIIQRSGCTYPEKPEF 340 (341)
Q Consensus 324 a~~v~~~g~~~p~~~~~ 340 (341)
+++|++.|+.+|+.+|+
T Consensus 279 a~~~~~~G~~~p~~~~~ 295 (304)
T TIGR03828 279 SAAAFSEGTGLPDPEDI 295 (304)
T ss_pred HHHhcCcCCCCCCHHHH
Confidence 99999999998887654
No 29
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=100.00 E-value=1.8e-41 Score=303.90 Aligned_cols=278 Identities=18% Similarity=0.235 Sum_probs=219.2
Q ss_pred eEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEEEe
Q 019448 6 ILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i~ 85 (341)
.|+|+|++++|++..++ ++|..++.....+....+||++.|+|.++++ ||.++.++|
T Consensus 1 ~v~~iG~~~vD~~~~v~--------------------~~p~~~~~~~~~~~~~~~GG~a~NvA~~la~---lG~~~~~~~ 57 (290)
T cd01939 1 AVLCVGLTVLDFITTVD--------------------KYPFEDSDQRTTNGRWQRGGNASNSCTVLRL---LGLSCEFLG 57 (290)
T ss_pred CEEEEeeeeeEEEeeec--------------------CCCCCCcceEeeeeeEecCCCHHHHHHHHHH---cCCceEEEE
Confidence 48999999999999887 5677666666667788999999999999997 469999999
Q ss_pred eeecCchhHHHHHHHHhcCcceeeee-cCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchhhhhccceEEEE
Q 019448 86 CIGKDKFGEEMKKNSKLAGVNVHYYE-DESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYI 163 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~i 163 (341)
.+|+|.+|+.+++.|++.||+++++. .+...+..++++.+ +|+|+++...++...+++++++. ..++++|++|+
T Consensus 58 ~vG~D~~g~~~~~~l~~~gId~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 133 (290)
T cd01939 58 VLSRGPVFESLLDDFQSRGIDISHCYRKDIDEPASSYIIRSRAGGRTTIVNDNNLPEVTYDDFSK----IDLTQYGWIHF 133 (290)
T ss_pred eecCCHHHHHHHHHHHHcCCceeeeeEcCCCCCeeEEEEEcCCCCeEEEEeCCCCCCCCHHHHhh----hhhccCCEEEE
Confidence 99999999999999999999999974 34344544555554 67888877666666666666653 33588999999
Q ss_pred eccccccCHHHHHHHHHHHHhCC-------CeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCC
Q 019448 164 AGFFLTVSPDSIQLVAEHAAANN-------KVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDD 236 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~a~~~~-------~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d 236 (341)
++.. ++...++++.+++.+ +++++|+.... +.+.++++++|++++|++|++.+ + ..+
T Consensus 134 ~g~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~------~~~~~~l~~~di~~~n~~~~~~~-~-----~~~ 197 (290)
T cd01939 134 EGRN----PDETLRMMQHIEEHNNRRPEIRITISVEVEKPR------EELLELAAYCDVVFVSKDWAQSR-G-----YKS 197 (290)
T ss_pred eccC----HHHHHHHHHHHHHhcCcCCCcceEEEEEeccCc------hhhhhHHhhCCEEEEEhHHHHhc-C-----cCC
Confidence 9854 345567777777765 57888875421 23558899999999999998765 3 134
Q ss_pred HHHHHHHHhcCCccccCCccEEEEEeCCCceEEEEC-CeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCC-HHH
Q 019448 237 VEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQD-GKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKP-IEE 314 (341)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~-~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~-~~~ 314 (341)
+++++..+.. ...+++.+|||+|++|++++.+ +..+++|+++. .+++||+||||+|+|||++++++|++ +++
T Consensus 198 ~~~~~~~~~~----~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~--~~vvDt~GAGDsf~agfl~~l~~g~~~~~~ 271 (290)
T cd01939 198 PEECLRGEGP----RAKKAALLVCTWGDQGAGALGPDGEYVHSPAHKP--IRVVDTLGAGDTFNAAVIYALNKGPDDLSE 271 (290)
T ss_pred HHHHHHhhhh----hccCCcEEEEEcccCCeEEEcCCCCEEEecCCCC--CCcccCCCchHHHHHHHHHHHHcCCccHHH
Confidence 5555443211 3457889999999999999875 55678887643 36899999999999999999999995 999
Q ss_pred HHHHHHHHhhhhhhhccc
Q 019448 315 CVRAGCYTSHVIIQRSGC 332 (341)
Q Consensus 315 a~~~a~~~Aa~~v~~~g~ 332 (341)
|+++|+++|+++++++|.
T Consensus 272 a~~~a~a~aa~~i~~~G~ 289 (290)
T cd01939 272 ALDFGNRVASQKCTGVGF 289 (290)
T ss_pred HHHHHHHHHHHHHhhhcC
Confidence 999999999999999885
No 30
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=1.2e-41 Score=318.78 Aligned_cols=312 Identities=16% Similarity=0.186 Sum_probs=227.1
Q ss_pred CceEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEE
Q 019448 4 EGILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSY 83 (341)
Q Consensus 4 ~~~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~ 83 (341)
++.|+|||++++|++...... +. ++.+ -+.+ ++ ..-..........+||+++|+|+++++ ||.++.|
T Consensus 125 ~~~v~~~Ge~liDf~~~~~~~-~~--~~~~--~~~~---~~--~~~~~~~~~f~~~~GGa~aNVAvaLAR---LG~~vaf 191 (496)
T PLN02543 125 PPLVCCFGAVQKEFVPTVRVH-DN--QMHP--DMYS---QW--KMLQWDPPEFARAPGGPPSNVAISHVR---LGGRAAF 191 (496)
T ss_pred CCeEEEeChhhhhhcCCCccc-cc--cccc--cccc---cc--ccccccCCeeEeccCcHHHHHHHHHHH---CCCCEEE
Confidence 356999999999999853210 00 0000 0000 00 000012345678999999999999998 5699999
Q ss_pred EeeeecCchhHHHHHHHHhcCcceeeee-cCCCCceeEEEEEe--CCcccee--ecccccccCCcccCCCcchhhhhccc
Q 019448 84 IGCIGKDKFGEEMKKNSKLAGVNVHYYE-DESASTGTCAVCVV--GGERSLV--ANLSAANCYKSEHLKKPENWALVEKA 158 (341)
Q Consensus 84 i~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~--~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (341)
+|.||+|.+|+++++.|++.||+++++. ..+..|+.+++.++ ++.+.++ ...+++..+.+++++. ..+.++
T Consensus 192 IG~VGdD~fG~~l~~~L~~~GVDts~v~~~~~~~Tgla~V~v~~~~~gr~~~~~~~~gA~~~L~~~di~~----~~l~~a 267 (496)
T PLN02543 192 MGKVGDDDFGEELVLMMNKERVQTRAVKFDENAKTACSRMKIKFRDGGKMVAETVKEAAEDSLLASELNL----AVLKEA 267 (496)
T ss_pred EEEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCceEEEEEEeCCCCCEEEEecCCCHHHhCChhhcCH----hHhCCC
Confidence 9999999999999999999999999985 45667999888773 3335543 2335556777777764 568899
Q ss_pred eEEEEeccccccC--HHHHHHHHHHHHhCCCeEEEeCC--chhHH--HHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCC
Q 019448 159 KYFYIAGFFLTVS--PDSIQLVAEHAAANNKVFMMNLS--APFIC--EFFKDALEKVLPYMDYIFGNETEARTFSKVQGW 232 (341)
Q Consensus 159 ~~v~i~~~~~~~~--~~~~~~~~~~a~~~~~~v~~d~~--~~~~~--~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~ 232 (341)
+++|++++.+..+ .+.+..+++.++++|+.+++|+. ...|. ....+.+.++++++|++++|++|++.|++....
T Consensus 268 ~ilh~~~~~l~~~~~~~a~~~al~~Ak~~G~~VsfDpN~R~~LW~~~~~~~~~i~~~l~~aDIl~~SeeEa~~Ltg~~~~ 347 (496)
T PLN02543 268 RMFHFNSEVLTSPSMQSTLFRAIELSKKFGGLIFFDLNLPLPLWRSRDETRELIKKAWNEADIIEVSRQELEFLLDEDYY 347 (496)
T ss_pred ceEEECChhhcCchHHHHHHHHHHHHHHCCCEEEEeCCCCccccCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCcc
Confidence 9999998764222 46788999999999999999986 34453 335566788999999999999999999864210
Q ss_pred ------C------------------CCCHHHHHHHHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEece---ecCC
Q 019448 233 ------E------------------TDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVI---VLPK 285 (341)
Q Consensus 233 ------~------------------~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~---~~~~ 285 (341)
+ ..+++.+ ..+ +..+++.||||+|++|+++++++....++.. .++
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l------~~~g~~~VVVT~G~~Ga~~~t~~~~g~v~~~~~~~v~- 419 (496)
T PLN02543 348 ERKRNYPPQYYAESFEQTKNWRDYYHYTPEEI-APL------WHDGLKLLLVTDGTLRIHYYTPKFDGVVVGTEDVLIT- 419 (496)
T ss_pred cccccccchhhhhhhhhhhcccccccCCHHHH-HHH------HHCCCCEEEEEcCCCcEEEEECCCcccccccccccCC-
Confidence 0 0123343 444 4567899999999999999976422222111 111
Q ss_pred CcccCCCCCchhhHHHHHHHHhc-------CCCHHHHHHHHHHHhhhhhhhccc--cCCCCCCC
Q 019448 286 DKLVDTNGAGDAFVGGFLSQLVQ-------EKPIEECVRAGCYTSHVIIQRSGC--TYPEKPEF 340 (341)
Q Consensus 286 ~~~vd~tGAGDaf~ag~~~~l~~-------g~~~~~a~~~a~~~Aa~~v~~~g~--~~p~~~~~ 340 (341)
..+||||||||+|+|||+++|+. ++++++|+++|+++||++|++.|+ .+|+.+|+
T Consensus 420 ~~~VDTTGAGDAF~AGfL~~Ll~~~~~~~~g~~l~ealrfAnAaaAl~vt~~GA~~~lPt~~ev 483 (496)
T PLN02543 420 PFTCDRTGSGDAVVAAIMRKLTTCPEMFEDQDVLERQLRFAVAAGIISQWTIGAVRGFPTESAT 483 (496)
T ss_pred CCCcCCCchHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHH
Confidence 13589999999999999999985 679999999999999999999998 67877664
No 31
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=100.00 E-value=9.5e-42 Score=309.29 Aligned_cols=299 Identities=17% Similarity=0.195 Sum_probs=224.2
Q ss_pred CCCceEEEEcCceeeeEee--cChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCC
Q 019448 2 AQEGILLGMGNPLLDISSV--VDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPG 79 (341)
Q Consensus 2 ~~~~~v~~iG~~~lD~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~ 79 (341)
+++++|+++|++++|.+.. ++. + . ++.|.+ .........++|| ++|+|.++++ +|.
T Consensus 5 ~~~~~il~iG~~~iD~~~~~~~~~-----~---------~--~~~~~~--~~~~~~~~~~~GG-a~NvA~~l~~---lg~ 62 (315)
T TIGR02198 5 FKGAKVLVVGDVMLDRYWYGKVSR-----I---------S--PEAPVP--VVKVEREEDRLGG-AANVARNIAS---LGA 62 (315)
T ss_pred hCCCcEEEECceeEeeeeeecccc-----c---------C--CCCCCc--eEEEEEEEecCcH-HHHHHHHHHh---cCC
Confidence 3578999999999999976 321 0 0 011111 1233445678899 7999999997 569
Q ss_pred cEEEEeeeecCchhHHHHHHHHhcCcceeee-ecCCCCceeEEEEEeCCccceeecccccccCCcccCCC--cchhhhhc
Q 019448 80 ATSYIGCIGKDKFGEEMKKNSKLAGVNVHYY-EDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKK--PENWALVE 156 (341)
Q Consensus 80 ~v~~i~~vG~D~~g~~i~~~l~~~gi~~~~~-~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ 156 (341)
++.++|.+|+|.+|+.+++.|++.||+++++ ..++.+|+.++.+.+.+.+...........++...... ......++
T Consensus 63 ~v~~i~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 142 (315)
T TIGR02198 63 RVFLVGVVGDDEAGKRLEALLAEEGIDTSGLIRDKDRPTTTKTRVLARNQQLLRVDFEERDPINAELEARLLAAIREQLA 142 (315)
T ss_pred ceEEEEEEecchhHHHHHHHHHHCCCCcceEEECCCCCcceEEEEEcCCeEEEEecCCCCCCCCHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999887 45566788887776643222222222111233211111 11234578
Q ss_pred cceEEEEecccc-ccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCC
Q 019448 157 KAKYFYIAGFFL-TVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETD 235 (341)
Q Consensus 157 ~~~~v~i~~~~~-~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~ 235 (341)
++|+++++++.. .++++.+..+++.++++++++++|+.+.. ...++++|++++|++|++.+++. ..+.+
T Consensus 143 ~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~---------~~~~~~~d~l~~n~~E~~~l~~~-~~~~~ 212 (315)
T TIGR02198 143 SADAVVLSDYAKGVLTPRVVQEVIAAARKHGKPVLVDPKGKD---------FSRYRGATLITPNRKEAEAAVGA-CDTEA 212 (315)
T ss_pred hCCEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEeCCCcc---------hhhcCCCcEECCCHHHHHHHhCC-CCCHH
Confidence 999999987652 45778899999999999999999997542 13578999999999999999872 22234
Q ss_pred CHHHHHHHHhcCCccccCCccEEEEEeCCCceEEEEC-CeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHH
Q 019448 236 DVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQD-GKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEE 314 (341)
Q Consensus 236 d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~-~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~ 314 (341)
+.+++++.+. ...|++.+|||+|++|++++++ +..+++|++++ +++||+||||+|.|||++++++|+++++
T Consensus 213 ~~~~~~~~l~-----~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~---~vvdt~GAGDaf~ag~~~~l~~g~~~~~ 284 (315)
T TIGR02198 213 ELVQAAEKLL-----EELDLEALLVTRSEKGMTLFTREGEPIHIPAQAR---EVYDVTGAGDTVIATLALALAAGASLEE 284 (315)
T ss_pred HHHHHHHHHH-----HHcCCCEEEEEcCCCCeEEEecCCCeEEecCCCC---CCCCCcCccHHHHHHHHHHHHcCCCHHH
Confidence 5556666652 2457899999999999999874 56778877654 8899999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhccccCCCCCCC
Q 019448 315 CVRAGCYTSHVIIQRSGCTYPEKPEF 340 (341)
Q Consensus 315 a~~~a~~~Aa~~v~~~g~~~p~~~~~ 340 (341)
|+++|+++|+++|++.|+..+.++++
T Consensus 285 al~~A~~~aa~~~~~~G~~~~~~~~~ 310 (315)
T TIGR02198 285 ACRLANAAAGVVVGKLGTATVSPAEL 310 (315)
T ss_pred HHHHHHHHhhhhhccCCCCCCCHHHH
Confidence 99999999999999999976766553
No 32
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=100.00 E-value=1.8e-41 Score=307.76 Aligned_cols=288 Identities=19% Similarity=0.156 Sum_probs=222.8
Q ss_pred eEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcE--EE
Q 019448 6 ILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGAT--SY 83 (341)
Q Consensus 6 ~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v--~~ 83 (341)
+|+++|++++|++...+. ......+||+++|+|+++++|.+.+.++ .+
T Consensus 1 ~~~~~G~~~~d~i~~~~~------------------------------~~~~~~~GG~~~N~A~~~~~l~g~~~~~~~~~ 50 (328)
T cd01943 1 DFTTLGMFIIDEIEYPDS------------------------------EPVTNVLGGAGTYAILGARLFLPPPLSRSISW 50 (328)
T ss_pred CccccCcEEeeccccCCC------------------------------CccccccCCchhhHhhceeeecCCccccceee
Confidence 589999999999986541 2445789999999999998632322366 88
Q ss_pred EeeeecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchhhhhccceEEE
Q 019448 84 IGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFY 162 (341)
Q Consensus 84 i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 162 (341)
++.+|+| +|+.+++.|++.||++++.+..+.+|+.++++++ +|+|.++.+.+.+..+++++++. ..+..++++|
T Consensus 51 ~~~vG~D-~G~~l~~~L~~~GVd~~~~~~~~~~Tg~~~v~~~~~g~r~~~~~~~~~~~~~~~~l~~----~~~~~a~~~h 125 (328)
T cd01943 51 IVDKGSD-FPKSVEDELESWGTGMVFRRDPGRLTTRGLNIYDGNDRRFFKYLTPKKRIDVSDDLNS----TPLIRSSCIH 125 (328)
T ss_pred EEecCCC-CCHHHHHHHHhcCCceEEEeCCCCcchhhhhhcCCCCcceeeecCccccccccccccc----ccccCCCeEE
Confidence 9999999 9999999999999999984455667888877775 57777777667667777877764 4478899999
Q ss_pred EeccccccCHHHHHHHHHHHHh------CCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCC
Q 019448 163 IAGFFLTVSPDSIQLVAEHAAA------NNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDD 236 (341)
Q Consensus 163 i~~~~~~~~~~~~~~~~~~a~~------~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d 236 (341)
+.+.... ..+...++++.+++ .+.++.+|+....+....++.+.++++++|++++|++|+..+++....+...
T Consensus 126 l~~~~~~-~~~~~~~~~~~a~~~~~d~~~g~~~~~d~~~~~~~~~~~~~l~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~ 204 (328)
T cd01943 126 LICSPER-CASIVDDIINLFKLLKGNSPTRPKIVWEPLPDSCDPENLEDLLQALPRVDVFSPNLEEAARLLGLPTSEPSS 204 (328)
T ss_pred EECCHHH-HHHHHHHHHHHHHhhccccCCccEEEEecCCcccChhhHHHHHHHhccCCEECCCHHHHHHHhCCCCCCccc
Confidence 9875321 22678888888888 7888989987532222234457899999999999999999998754322222
Q ss_pred HHHHHH-----HHhcCCccccCCccEEEEEeCCCceEEEE--CCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcC
Q 019448 237 VEEIAL-----KLSQWPKASEIRKRTAVITQGADPVVVAQ--DGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQE 309 (341)
Q Consensus 237 ~~~~~~-----~l~~~~~~~~~~~~~vvvt~G~~G~~~~~--~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g 309 (341)
...... .+..+ ...+++.||||+|++|+++++ +++.+++|++++++.+++|||||||+|+|||+++|++|
T Consensus 205 ~~~~~~~~~~~~~~~~---~~~g~~~vvvt~G~~Ga~~~~~~~~~~~~~p~~~v~~~~vvDttGAGDaF~agfl~~l~~g 281 (328)
T cd01943 205 DEEKEAVLQALLFSGI---LQDPGGGVVLRCGKLGCYVGSADSGPELWLPAYHTKSTKVVDPTGGGNSFLGGFAAGLALT 281 (328)
T ss_pred hhhhhhhHHHHHHHhh---hccCCCEEEEEeCCCCCEEEecCCCceEecCCccCCCCcccCCCCchHHHHHHHHHHHHcC
Confidence 222111 11111 345788999999999999997 45677888776544589999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhhhhhhccc
Q 019448 310 KPIEECVRAGCYTSHVIIQRSGC 332 (341)
Q Consensus 310 ~~~~~a~~~a~~~Aa~~v~~~g~ 332 (341)
+++++|+++|+++|++++++.|.
T Consensus 282 ~~~~~al~~a~a~Aa~~v~~~G~ 304 (328)
T cd01943 282 KSIDEACIYGSVAASFAIEQVGL 304 (328)
T ss_pred CCHHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999996
No 33
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=100.00 E-value=1.6e-40 Score=300.20 Aligned_cols=295 Identities=18% Similarity=0.194 Sum_probs=230.0
Q ss_pred CCCCceEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCc
Q 019448 1 MAQEGILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGA 80 (341)
Q Consensus 1 ~~~~~~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~ 80 (341)
|.| -+.+.=++.+|.++.++ +++ ++...++......+||+++|+|+++++ ||.+
T Consensus 1 ~~~--i~~~~~~p~~d~~~~~~--------------------~~~-~~~~~~~~~~~~~~GG~~~NvA~~l~~---lG~~ 54 (309)
T PRK10294 1 MVR--IYTLTLAPSLDSATITP--------------------QIY-PEGKLRCSAPVFEPGGGGINVARAIAH---LGGS 54 (309)
T ss_pred CCe--EEEEecChHHeEEEEeC--------------------cee-eCCeEEeccceecCCccHHHHHHHHHH---cCCC
Confidence 444 56777999999999997 444 556667777888999999999999998 4699
Q ss_pred EEEEeeeecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEe-CCccceeecccccccCCcccCCCc-chhhhhccc
Q 019448 81 TSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKP-ENWALVEKA 158 (341)
Q Consensus 81 v~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~ 158 (341)
+.+++.+|+ .+|+.+++.|++.||+++++...+..++...+..+ +|++.++.+.+. .++.++++.. .....+++.
T Consensus 55 ~~~i~~vG~-~~g~~i~~~l~~~gv~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 131 (309)
T PRK10294 55 ATAIFPAGG-ATGEHLVSLLADENVPVATVEAKDWTRQNLHVHVEASGEQYRFVMPGA--ALNEDEFRQLEEQVLEIESG 131 (309)
T ss_pred eEEEEEecC-ccHHHHHHHHHHcCCCceEEECCCCCeeeEEEEEcCCCcEEEEECCCC--CCCHHHHHHHHHHHHhcCCC
Confidence 999999996 79999999999999999998655444444444444 577666555443 3444443321 111346789
Q ss_pred eEEEEecccc-ccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCCH
Q 019448 159 KYFYIAGFFL-TVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDV 237 (341)
Q Consensus 159 ~~v~i~~~~~-~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~ 237 (341)
++++++++.+ ..+.+.+..+++.+++.|.++++|+..... ++. ..++++|++++|++|+..|++....+.+++
T Consensus 132 ~~~~i~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~----~~~--~~~~~~~~i~~n~~E~~~l~g~~~~~~~~~ 205 (309)
T PRK10294 132 AILVISGSLPPGVKLEKLTQLISAAQKQGIRCIIDSSGDAL----SAA--LAIGNIELVKPNQKELSALVNRDLTQPDDV 205 (309)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCHHH----HHH--HhcCCCeEECCCHHHHHHHhCCCCCCHHHH
Confidence 9999998754 345688999999999999999999975421 111 125689999999999999987544334456
Q ss_pred HHHHHHHhcCCccccCC-ccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHH
Q 019448 238 EEIALKLSQWPKASEIR-KRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECV 316 (341)
Q Consensus 238 ~~~~~~l~~~~~~~~~~-~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~ 316 (341)
+++++.+ ++.+ ++.+|||+|++|++++++++.++++++++ +++|||||||+|+|||+++|++|+++++|+
T Consensus 206 ~~a~~~l------~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~v---~vvDttGAGDaf~ag~l~~l~~g~~~~~al 276 (309)
T PRK10294 206 RKAAQEL------VNSGKAKRVVVSLGPQGALGVDSENCIQVVPPPV---KSQSTVGAGDSMVGAMTLKLAENASLEEMV 276 (309)
T ss_pred HHHHHHH------HHcCCCCEEEEecCCCceEEEcCCccEEEeCCCc---ccCCCcchHHHHHHHHHHHHHcCCCHHHHH
Confidence 6777777 4555 78999999999999998877777876644 789999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhccccCCCCCC
Q 019448 317 RAGCYTSHVIIQRSGCTYPEKPE 339 (341)
Q Consensus 317 ~~a~~~Aa~~v~~~g~~~p~~~~ 339 (341)
++|+++|+++|++.|+..+..++
T Consensus 277 ~~a~a~aa~~v~~~G~~~~~~~~ 299 (309)
T PRK10294 277 RFGVAAGSAATLNQGTRLCSHDD 299 (309)
T ss_pred HHHHHHHHHHhcCCCCCCCCHHH
Confidence 99999999999999997665443
No 34
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=2.6e-40 Score=296.17 Aligned_cols=283 Identities=19% Similarity=0.262 Sum_probs=219.2
Q ss_pred eEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEEEe
Q 019448 6 ILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i~ 85 (341)
.|+++|++++|+++.++ +.|.+++... ......+||+++|+|+++++ +|.++.++|
T Consensus 1 ~v~~~G~~~~D~~~~~~--------------------~~~~~~~~~~-~~~~~~~GG~~~Nva~~l~~---lG~~~~~~~ 56 (288)
T cd01941 1 EIVVIGAANIDLRGKVS--------------------GSLVPGTSNP-GHVKQSPGGVGRNIAENLAR---LGVSVALLS 56 (288)
T ss_pred CeEEEEeEEEeeeeccc--------------------CccccCCCCC-eeEEEccCcHHHHHHHHHHH---hCCCcEEEE
Confidence 37999999999999877 3344433332 34678999999999999998 469999999
Q ss_pred eeecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEe-CCcccee-ecccccccCCcccCCCcchhhhhccceEEEE
Q 019448 86 CIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVV-GGERSLV-ANLSAANCYKSEHLKKPENWALVEKAKYFYI 163 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~i 163 (341)
.+|+|.+|+.+++.|++.||++.++...+.+|+.++++++ +|++.+. ........++++++. .....+.+++++++
T Consensus 57 ~lG~D~~g~~i~~~L~~~gI~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~v~~ 134 (288)
T cd01941 57 AVGDDSEGESILEESEKAGLNVRGIVFEGRSTASYTAILDKDGDLVVALADMDIYELLTPDFLR--KIREALKEAKPIVV 134 (288)
T ss_pred EEecCccHHHHHHHHHHcCCccceeeeCCCCcceEEEEECCCCCEEEEEechHhhhhCCHHHHH--HHHHHHhcCCEEEE
Confidence 9999999999999999999999988666778999888876 6777652 222222233333221 12356889999998
Q ss_pred eccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCCHHHHHHH
Q 019448 164 AGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALK 243 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~~~~~~~ 243 (341)
++ ..+++.+..+++.+++.+.++++|+..... .++ +.++++++|++++|++|+..+++....+.....++++.
T Consensus 135 ~~---~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~---~~~-~~~~~~~~dii~~n~~E~~~~~~~~~~~~~~~~~~~~~ 207 (288)
T cd01941 135 DA---NLPEEALEYLLALAAKHGVPVAFEPTSAPK---LKK-LFYLLHAIDLLTPNRAELEALAGALIENNEDENKAAKI 207 (288)
T ss_pred eC---CCCHHHHHHHHHhhhhcCCcEEEEccchHH---hcc-chhhcccceEEeCCHHHHHHHhCcccCCchhHHHHHHH
Confidence 75 346778889999999999999999864221 111 11588999999999999999987543222334455566
Q ss_pred HhcCCccccCCccEEEEEeCCCceEEEEC---CeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHHHHH
Q 019448 244 LSQWPKASEIRKRTAVITQGADPVVVAQD---GKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGC 320 (341)
Q Consensus 244 l~~~~~~~~~~~~~vvvt~G~~G~~~~~~---~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~~a~ 320 (341)
+ ...+++.+|+|+|++|++++++ +..+++|++ ..++++||+||||+|.|||+++|++|+++++|+++|+
T Consensus 208 ~------~~~~~~~vvit~G~~Ga~~~~~~~~~~~~~~~~~--~~~~~vDttGAGDaf~a~~~~~l~~g~~~~~al~~a~ 279 (288)
T cd01941 208 L------LLPGIKNVIVTLGAKGVLLSSREGGVETKLFPAP--QPETVVNVTGAGDAFVAGLVAGLLEGMSLDDSLRFAQ 279 (288)
T ss_pred H------HHcCCcEEEEEeCCCcEEEEecCCCceeEEecCC--CCccceeCCCcHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5 5678899999999999999986 566788863 1348999999999999999999999999999999999
Q ss_pred HHhhhhhhh
Q 019448 321 YTSHVIIQR 329 (341)
Q Consensus 321 ~~Aa~~v~~ 329 (341)
++|+++|+.
T Consensus 280 ~~Aa~~~~~ 288 (288)
T cd01941 280 AAAALTLES 288 (288)
T ss_pred HHHHHHhcC
Confidence 999999863
No 35
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-40 Score=288.08 Aligned_cols=298 Identities=23% Similarity=0.332 Sum_probs=239.5
Q ss_pred CCCceEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcE
Q 019448 2 AQEGILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGAT 81 (341)
Q Consensus 2 ~~~~~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v 81 (341)
+.++.|+|+|++..|+....+ .+|.+++..........+||.++|+|++++| ||.++
T Consensus 7 ~~~~~vv~fGs~~~D~V~~~~--------------------~~p~~ge~~~~~~f~~~~GG~~aN~Avaaar---LG~~~ 63 (330)
T KOG2855|consen 7 GEPPLVVVFGSMLIDFVPSTR--------------------RLPNAGETWEPPGFKTAPGGKGANQAVAAAR---LGGRV 63 (330)
T ss_pred cCCceEEEeccceeeeeeccc--------------------cCCCccccccCCcceecCCCcchhhhhHHHh---cCcce
Confidence 346789999999999999887 6788888888889999999999999999998 56999
Q ss_pred EEEeeeecCchhHHHHHHHHhcCcceeeee-cCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchhhhhccce
Q 019448 82 SYIGCIGKDKFGEEMKKNSKLAGVNVHYYE-DESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENWALVEKAK 159 (341)
Q Consensus 82 ~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~-~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (341)
.|+|.||+|.||+.+.+.|++++|+++++. .++..|+...+.+. +|++.++.+.+++....++..+. ..+.+++++
T Consensus 64 afiGkvGdD~fG~~l~~~L~~~~V~~~~v~~~~~~~T~~a~i~v~~dG~~~~~~v~gan~~~~~~~se~--~~~~i~~ak 141 (330)
T KOG2855|consen 64 AFIGKVGDDEFGDDLLDILKQNGVDTSGVKFDENARTACATITVSKDGENRIIFVRGANADMLPEDSEL--NLEVIKEAK 141 (330)
T ss_pred eeeecccchhhHHHHHHHHhhCCcccccceecCCCceEEEEEEEccCCceEEEEEecCchhcCcccccc--cHHHHhhcc
Confidence 999999999999999999999999999984 67778888877775 89999988888888777665332 457899999
Q ss_pred EEEEeccccccCHHHHHHH--HHHHHhCCCeEEEeC--CchhHHH--HHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCC
Q 019448 160 YFYIAGFFLTVSPDSIQLV--AEHAAANNKVFMMNL--SAPFICE--FFKDALEKVLPYMDYIFGNETEARTFSKVQGWE 233 (341)
Q Consensus 160 ~v~i~~~~~~~~~~~~~~~--~~~a~~~~~~v~~d~--~~~~~~~--~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~ 233 (341)
++++....+...+....++ ++.+++.+..+.+|| .-+.|.. .++..+..++..+|++.++++|+..+++.
T Consensus 142 ~~~~q~ei~~~~~~~s~~~~~~~~~~~~g~~i~~~pn~~l~l~~~~~~ne~e~~~i~~~adv~~~s~~e~~fl~~~---- 217 (330)
T KOG2855|consen 142 VFHCQSEILIEEPMRSLHIAAVKVAKNAGPAIFYDPNLRLPLWDSLEENESEIASIWNMADVIKVSSQELAFLTGI---- 217 (330)
T ss_pred EEEEeeecCCcchhHHHHHhhhhhhhcccccccCCCCccccccccccccHHHHHHHhhhhhcccccHHHHHHhccC----
Confidence 9999876543333333333 346666665554444 3344442 24455777888899999999999988764
Q ss_pred CCCHHHHHHHHhcCCccccCCccEEEEEeCCCceEEEECCeeE-EEeceecCCCcccCCCCCchhhHHHHHHHHhcC--C
Q 019448 234 TDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLK-KFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQE--K 310 (341)
Q Consensus 234 ~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~-~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g--~ 310 (341)
...+.. .| +..+.+.+|||+|++|+.||+++..- ++|++.+ ++||||||||+|+|||+.+|.+| .
T Consensus 218 --~~~~~~-~L------~~~~~k~viVTlG~kG~~y~tk~~~~~~v~~~~V---~~VDtTGAGDsFvgal~~~L~~~~~~ 285 (330)
T KOG2855|consen 218 --EDDKIL-KL------WHMKLKLVIVTLGEKGCRYYTKDFKGSHVPAFKV---KAVDTTGAGDSFVGALAVQLVRGSLL 285 (330)
T ss_pred --ccchHH-HH------hccCCCEEEEEeCCCceEEEecCCCCCCCCCccc---ccccCCCchHHHHHHHHHHHhhcccc
Confidence 122223 55 66777999999999999999887554 7887766 79999999999999999999999 6
Q ss_pred C---HHHHHHHHHHHhhhhhhhccc--cCCCCCCC
Q 019448 311 P---IEECVRAGCYTSHVIIQRSGC--TYPEKPEF 340 (341)
Q Consensus 311 ~---~~~a~~~a~~~Aa~~v~~~g~--~~p~~~~~ 340 (341)
+ +++++++|++|++++++++|. .+|..++.
T Consensus 286 ~~~~L~~~l~~A~a~~ai~v~~~Ga~~s~p~~~~~ 320 (330)
T KOG2855|consen 286 PELSLEEALRFANACGAITVQRKGAIPSMPTEKEV 320 (330)
T ss_pred chHHHHHHHHHHHHhhhHHhhccCCCccCccHHHH
Confidence 6 999999999999999999999 77876653
No 36
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=100.00 E-value=3.8e-40 Score=298.20 Aligned_cols=295 Identities=17% Similarity=0.150 Sum_probs=232.6
Q ss_pred CCCCceEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCc
Q 019448 1 MAQEGILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGA 80 (341)
Q Consensus 1 ~~~~~~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~ 80 (341)
|+.+ -.+|.=++.+|++..++ ++| .++..+..+...++||++.|+|.++++ +|.+
T Consensus 1 ~~~~-~~~~~~~p~~D~~~~~~--------------------~~~-~~~~~~~~~~~~~~GG~~~Nva~~la~---lG~~ 55 (312)
T PRK09513 1 MSRR-VATITLNPAYDLVGFCP--------------------EIE-RGEVNLVKTTGLHAAGKGINVAKVLKD---LGID 55 (312)
T ss_pred CCce-EEEEecChHHeEEEEcC--------------------cee-cCCeeeecceeecCCchHHHHHHHHHH---cCCC
Confidence 4443 44477899999999988 566 577778888899999999999999997 5699
Q ss_pred EEEEeeeecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEe-CCccceeecccccccCCcccCCC--cchhhhhcc
Q 019448 81 TSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKK--PENWALVEK 157 (341)
Q Consensus 81 v~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~ 157 (341)
+.++|.+|+|.+|+. .+.|+++||++.++... ++|+.++.+++ +|+++.+...+ ..+++.+... ......+++
T Consensus 56 ~~~i~~vG~D~~~~~-~~~l~~~gv~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~ 131 (312)
T PRK09513 56 VTVGGFLGKDNQDGF-QQLFSELGIANRFQVVQ-GRTRINVKLTEKDGEVTDFNFSG--FEVTPADWERFVTDSLSWLGQ 131 (312)
T ss_pred eEEEEEecCccHHHH-HHHHHHcCCCccEEECC-CCCEEEEEEEeCCCcEEEEeCCC--CCCCHHHHHHHHHHHHhhcCC
Confidence 999999999999997 58899999998877554 46887777766 67777655443 2343333321 011245789
Q ss_pred ceEEEEecccc-ccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCC
Q 019448 158 AKYFYIAGFFL-TVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDD 236 (341)
Q Consensus 158 ~~~v~i~~~~~-~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d 236 (341)
+|++|++++.+ ..+.+.+..+++.+++.+.++++|+.... . ...+..+.+++++|++|+..+++....+.++
T Consensus 132 ~d~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~----~---~~~~~~~~~~l~~n~~E~~~l~g~~~~~~~~ 204 (312)
T PRK09513 132 FDMVAVSGSLPRGVSPEAFTDWMTRLRSQCPCIIFDSSREA----L---VAGLKAAPWLVKPNRRELEIWAGRKLPELKD 204 (312)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHhcCCEEEEECChHH----H---HHHhccCCeEEcCCHHHHHHHhCCCCCCHHH
Confidence 99999998754 24567888999999999999999997532 1 2234557889999999999998754333344
Q ss_pred HHHHHHHHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHH
Q 019448 237 VEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECV 316 (341)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~ 316 (341)
+.++++.+ .+.|++.+|||+|++|++++++++.++++++. ++++||+||||+|+|||+++|++|+++++|+
T Consensus 205 ~~~~~~~l------~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~---~~~vDttGAGDaf~ag~i~~l~~g~~~~~a~ 275 (312)
T PRK09513 205 VIEAAHAL------REQGIAHVVISLGAEGALWVNASGEWIAKPPA---CDVVSTVGAGDSMVGGLIYGLLMRESSEHTL 275 (312)
T ss_pred HHHHHHHH------HHcCCCEEEEEeCCCCcEEEeCCceEEecCCC---ccccCCCChHHHHHHHHHHHHHcCCCHHHHH
Confidence 55667777 56788999999999999998877777777654 4799999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhccccCCCCCCC
Q 019448 317 RAGCYTSHVIIQRSGCTYPEKPEF 340 (341)
Q Consensus 317 ~~a~~~Aa~~v~~~g~~~p~~~~~ 340 (341)
++|+++|++++++.|..+|+.+|+
T Consensus 276 ~~A~a~Aa~~~~~~~~~~~~~~e~ 299 (312)
T PRK09513 276 RLATAVSALAVSQSNVGITDRPQL 299 (312)
T ss_pred HHHHHHHHHHhhCCCCCCCCHHHH
Confidence 999999999999999888877664
No 37
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=100.00 E-value=6.1e-40 Score=293.86 Aligned_cols=281 Identities=21% Similarity=0.210 Sum_probs=224.7
Q ss_pred EEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEEEee
Q 019448 7 LLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGC 86 (341)
Q Consensus 7 v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i~~ 86 (341)
..++|++++|+++.++ ++| .++..+..+....+||.++|+|.+|++ +|.+|.++|.
T Consensus 3 ~~~~~~~~~D~~~~~~--------------------~~~-~~~~~~~~~~~~~~GG~~~Nva~~la~---lG~~v~~is~ 58 (289)
T cd01164 3 YTVTLNPAIDLTIELD--------------------QLQ-PGEVNRVSSTRKDAGGKGINVARVLKD---LGVEVTALGF 58 (289)
T ss_pred EEEecChHHeEEEEcC--------------------ccc-CCceeecccccccCCcchhHHHHHHHH---cCCCeEEEEE
Confidence 4789999999999998 555 356677778889999999999999997 4699999999
Q ss_pred eecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEe-CCccceeecccccccCCcccCCC--cchhhhhccceEEEE
Q 019448 87 IGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKK--PENWALVEKAKYFYI 163 (341)
Q Consensus 87 vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~v~i 163 (341)
+|+| +|+.+++.|++.||++.++... .+|+..+++.+ +++++.+...+ ..++++++.. ....+.+++++++|+
T Consensus 59 vG~D-~g~~i~~~l~~~gi~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i 134 (289)
T cd01164 59 LGGF-TGDFFEALLKEEGIPDDFVEVA-GETRINVKIKEEDGTETEINEPG--PEISEEELEALLEKLKALLKKGDIVVL 134 (289)
T ss_pred ccCc-hhHHHHHHHHHcCCCceEEECC-CCCEEEEEEEeCCCCEEEEeCCC--CCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 9998 8999999999999999988654 45677766665 45555554333 2344444322 011134678999999
Q ss_pred ecccc-ccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhc-CCCcEEecCHHHHHHHhhhcCCCCCCHHHHH
Q 019448 164 AGFFL-TVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVL-PYMDYIFGNETEARTFSKVQGWETDDVEEIA 241 (341)
Q Consensus 164 ~~~~~-~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l-~~~dvl~~n~~E~~~l~~~~~~~~~d~~~~~ 241 (341)
++..+ ..+.+.+..+++.+++.+.++++|+.... +.+++ +++|++++|++|++.+++....+.++..+++
T Consensus 135 ~g~~~~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~--------~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~ 206 (289)
T cd01164 135 SGSLPPGVPADFYAELVRLAREKGARVILDTSGEA--------LLAALAAKPFLIKPNREELEELFGRPLGDEEDVIAAA 206 (289)
T ss_pred eCCCCCCcCHHHHHHHHHHHHHcCCeEEEECChHH--------HHHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHH
Confidence 88653 23457888999999999999999997532 22333 7999999999999999876544445667777
Q ss_pred HHHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 019448 242 LKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCY 321 (341)
Q Consensus 242 ~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~~a~~ 321 (341)
+.+ .+.+++.+|||+|++|++++.+++.+++++++. +++||+||||+|+|||+++|++|+++++|+++|++
T Consensus 207 ~~l------~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~---~vvDttGAGDaf~a~~i~~l~~g~~~~~a~~~A~~ 277 (289)
T cd01164 207 RKL------IERGAENVLVSLGADGALLVTKDGVYRASPPKV---KVVSTVGAGDSMVAGFVAGLAQGLSLEEALRLAVA 277 (289)
T ss_pred HHH------HHcCCCEEEEecCCCCCEEEcCCcEEEecCCCc---cccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 777 566788999999999999998877778776544 78999999999999999999999999999999999
Q ss_pred Hhhhhhhhccc
Q 019448 322 TSHVIIQRSGC 332 (341)
Q Consensus 322 ~Aa~~v~~~g~ 332 (341)
+|+++|++.|+
T Consensus 278 ~Aa~~~~~~G~ 288 (289)
T cd01164 278 AGSATAFSPGT 288 (289)
T ss_pred HHHHHhcCccC
Confidence 99999999986
No 38
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=100.00 E-value=7.6e-40 Score=288.72 Aligned_cols=258 Identities=17% Similarity=0.241 Sum_probs=206.9
Q ss_pred ceEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEEE
Q 019448 5 GILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYI 84 (341)
Q Consensus 5 ~~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i 84 (341)
.+|+++|++++|++...+ +.++||.+.|+|.++++ ||.++.++
T Consensus 1 ~~v~~iG~~~~D~~~~~~----------------------------------~~~~GG~~~NvA~~l~~---lG~~~~~i 43 (260)
T PRK09813 1 KKLATIGDNCVDIYPQLG----------------------------------KAFSGGNAVNVAVYCTR---YGIQPGCI 43 (260)
T ss_pred CeEEEeccceeeecccCC----------------------------------ccccCccHHHHHHHHHH---cCCcceEE
Confidence 379999999999987543 25999999999999997 46999999
Q ss_pred eeeecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEeCCccceeecc-cccccCCcccCCCcchhhhhccceEEEE
Q 019448 85 GCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSLVANL-SAANCYKSEHLKKPENWALVEKAKYFYI 163 (341)
Q Consensus 85 ~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~v~i 163 (341)
|.+|+|.+|+++++.|++.||+++++...+.+|+.+++.+++++|++..+. +....+..++. ..+.+.+++++++
T Consensus 44 s~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~t~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~----~~~~l~~~~~v~~ 119 (260)
T PRK09813 44 TWVGDDDYGTKLKQDLARMGVDISHVHTKHGVTAQTQVELHDNDRVFGDYTEGVMADFALSEE----DYAWLAQYDIVHA 119 (260)
T ss_pred EEecCcHHHHHHHHHHHHcCCcchheeeecCCCceEEEEEeCCcEEeeccCCCcccccccCHH----HHHHHHhCCEEEE
Confidence 999999999999999999999999986555668887777667888775443 32233222211 1245788999999
Q ss_pred eccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCCHHHHHHH
Q 019448 164 AGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALK 243 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~~~~~~~ 243 (341)
+.+. ....+++.+++++.++++|+.... ..+.+..+++++|+++.|+++. ..+.+++++.
T Consensus 120 ~~~~------~~~~~~~~~~~~~~~v~~D~~~~~----~~~~~~~~~~~~d~~~~~~~~~----------~~~~~~~~~~ 179 (260)
T PRK09813 120 AIWG------HAEDAFPQLHAAGKLTAFDFSDKW----DSPLWQTLVPHLDYAFASAPQE----------DEFLRLKMKA 179 (260)
T ss_pred eccc------hHHHHHHHHHHcCCeEEEEcCCCc----cHHHHHHhCCceeEEEecCCcc----------hHHHHHHHHH
Confidence 6432 235667778899999999997542 1233567899999999886531 1235567777
Q ss_pred HhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHHHHHHHh
Q 019448 244 LSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTS 323 (341)
Q Consensus 244 l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~~a~~~A 323 (341)
+ .+.+++.+|||+|++|++++++++.+++|++++ +++|||||||+|+|||++++++|+++++|+++|+++|
T Consensus 180 ~------~~~g~~~viit~G~~Ga~~~~~~~~~~~~~~~~---~~vDttGAGDaF~ag~i~~~~~g~~~~~al~~a~~~a 250 (260)
T PRK09813 180 I------VARGAGVVIVTLGENGSIAWDGAQFWRQAPEPV---TVVDTMGAGDSFIAGFLCGWLAGMTLPQAMAQGTACA 250 (260)
T ss_pred H------HHcCCCEEEEEECCCceEEEECCEEEecCCccc---CCCCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6 566889999999999999999888888888765 7899999999999999999999999999999999999
Q ss_pred hhhhhhccc
Q 019448 324 HVIIQRSGC 332 (341)
Q Consensus 324 a~~v~~~g~ 332 (341)
+++++++|+
T Consensus 251 a~~~~~~G~ 259 (260)
T PRK09813 251 AKTIQYHGA 259 (260)
T ss_pred HHHHhccCC
Confidence 999999986
No 39
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=100.00 E-value=7.6e-40 Score=295.82 Aligned_cols=288 Identities=18% Similarity=0.187 Sum_probs=222.3
Q ss_pred eEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEEEe
Q 019448 6 ILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i~ 85 (341)
-+.+..++.+|++..++ +++.. ...........+||++.|+|+++++ ||.++.++|
T Consensus 2 ~~~~t~np~~D~~~~~~--------------------~~~~~-~~~~~~~~~~~~GG~~~NvA~~la~---LG~~~~~~~ 57 (309)
T PRK13508 2 ILTVTLNPSIDISYPLD--------------------ELKLD-TVNRVVDVSKTAGGKGLNVTRVLSE---FGENVLATG 57 (309)
T ss_pred EEEEecChHHeEEEEeC--------------------CeeeC-CeEEecceeecCCchHHHHHHHHHH---cCCCeEEEE
Confidence 46788999999999987 34333 2334556788999999999999997 569999999
Q ss_pred eeecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEeCCccceeecccccccCCcccCCC--cchhhhhccceEEEE
Q 019448 86 CIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKK--PENWALVEKAKYFYI 163 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~v~i 163 (341)
.+|+ .+|+.+++.|++ ||+++++... ..|+.++.+.++|+|+++...++ .+.++.... ......+.++|++|+
T Consensus 58 ~vGd-~~G~~i~~~l~~-gI~~~~~~~~-~~t~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~ 132 (309)
T PRK13508 58 LIGG-ELGQFIAEHLDD-QIKHAFYKIK-GETRNCIAILHEGQQTEILEKGP--EISVQEADGFLHHFKQLLESVEVVAI 132 (309)
T ss_pred EecC-hhHHHHHHHHHc-CCCceEEECC-CCCeeeEEEEeCCCEEEEECCCC--CCCHHHHHHHHHHHHHhccCCCEEEE
Confidence 9996 689999999999 9999987654 45777777777788887765553 233322211 011245789999999
Q ss_pred eccccc-cCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCC-CCCCHHHHH
Q 019448 164 AGFFLT-VSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGW-ETDDVEEIA 241 (341)
Q Consensus 164 ~~~~~~-~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~-~~~d~~~~~ 241 (341)
+++.+. .+.+.+..+++.+++.|.++++|+.... .+.+...++++|++++|++|++.+++.... +.++..+++
T Consensus 133 ~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~-----~~~~~~~~~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~ 207 (309)
T PRK13508 133 SGSLPAGLPVDYYAQLIELANQAGKPVVLDCSGAA-----LQAVLESPYKPTVIKPNIEELSQLLGKEVSEDLDELKEVL 207 (309)
T ss_pred eCCCCCCcCHHHHHHHHHHHHHCCCEEEEECCcHH-----HHHHHhccCCceEEccCHHHHHHHhCCCCCCCHHHHHHHH
Confidence 986542 2456788899999999999999997542 122333467899999999999999874321 111233444
Q ss_pred HHHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 019448 242 LKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCY 321 (341)
Q Consensus 242 ~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~~a~~ 321 (341)
+++ ...|++.+|||+|++|++++.+++.++++++++ +++|||||||+|+|||+++|++|+++++|+++|++
T Consensus 208 ~~~------~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~v---~vvDttGAGDaF~Agfi~~l~~g~~~~~al~~a~a 278 (309)
T PRK13508 208 QQP------LFEGIEWIIVSLGADGAFAKHNDTFYKVDIPKI---EVVNPVGSGDSTVAGIASGLLHQEDDADLLKKANV 278 (309)
T ss_pred HHH------HHcCCCEEEEecCCCceEEEeCCceEEEeCCCc---cccCCcChhHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 444 456789999999999999998888888887654 89999999999999999999999999999999999
Q ss_pred HhhhhhhhccccCCC
Q 019448 322 TSHVIIQRSGCTYPE 336 (341)
Q Consensus 322 ~Aa~~v~~~g~~~p~ 336 (341)
+|++++++.+.....
T Consensus 279 ~aa~~~~~~~~~~~~ 293 (309)
T PRK13508 279 LGMLNAQEKQTGHVN 293 (309)
T ss_pred HHHHHhcCcCcCCCC
Confidence 999999999886444
No 40
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=100.00 E-value=8.2e-40 Score=295.00 Aligned_cols=289 Identities=20% Similarity=0.211 Sum_probs=228.0
Q ss_pred EEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEEEeee
Q 019448 8 LGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCI 87 (341)
Q Consensus 8 ~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i~~v 87 (341)
.|-=++.+|++..++ + +..++.....+....+||.+.|+|+++++ +|.++.++|.+
T Consensus 3 ~~~~~~~~D~~~~~~--------------------~-~~~~~~~~~~~~~~~~GG~~~N~a~~l~~---lg~~~~~i~~v 58 (303)
T TIGR03168 3 TVTLNPAIDLTIEVD--------------------G-LTPGEVNRVAAVRKDAGGKGINVARVLAR---LGAEVVATGFL 58 (303)
T ss_pred EEEcchHHeEEEEcC--------------------c-cccCceeecCcccccCCcchhhHHHHHHH---cCCCeEEEEEe
Confidence 345567889998887 4 34456666677889999999999999998 46999999999
Q ss_pred ecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEe-CCccceeecccccccCCcccCCC--cchhhhhccceEEEEe
Q 019448 88 GKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKK--PENWALVEKAKYFYIA 164 (341)
Q Consensus 88 G~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~v~i~ 164 (341)
|+| +|+.+++.|++.||++.++... ..|+.++++.+ +|++..+...+ ..++++++.. ....+.+++++++|++
T Consensus 59 G~D-~g~~i~~~l~~~gI~~~~i~~~-~~t~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~i~ 134 (303)
T TIGR03168 59 GGF-TGEFIEALLAEEGIKNDFVEVK-GETRINVKIKESSGEETELNEPG--PEISEEELEQLLEKLRELLASGDIVVIS 134 (303)
T ss_pred CCc-hhHHHHHHHHHcCCCceEEECC-CCCEEeEEEEeCCCCEEEEeCcC--CCCCHHHHHHHHHHHHHhccCCCEEEEe
Confidence 998 7999999999999999998754 35666666665 56665554433 3455554432 0111347899999998
Q ss_pred cccc-ccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCCHHHHHHH
Q 019448 165 GFFL-TVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALK 243 (341)
Q Consensus 165 ~~~~-~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~~~~~~~ 243 (341)
++.. ..+.+.+..+++.+++++.++.+|+..... .+.+..++|++++|++|+..+++....+.++..++++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~g~~v~~D~~~~~~-------~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~ 207 (303)
T TIGR03168 135 GSLPPGVPPDFYAQLIAIARKRGAKVILDTSGEAL-------REALAAKPFLIKPNHEELEELFGRELKTEEEIIEAARE 207 (303)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEECCcHHH-------HHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 8642 456788899999999999999999975421 12233579999999999999988644333455666777
Q ss_pred HhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHHHHHHHh
Q 019448 244 LSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTS 323 (341)
Q Consensus 244 l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~~a~~~A 323 (341)
+ ...+++.+|||+|++|++++++++.+++|++++ +++|++||||+|+|||++++++|+++++|+++|+++|
T Consensus 208 l------~~~g~~~vviT~g~~G~~~~~~~~~~~~~~~~~---~~vDttGAGD~F~a~~~~~l~~g~~i~~a~~~A~~~a 278 (303)
T TIGR03168 208 L------LDRGAENVLVSLGADGALLVTKEGALKATPPKV---EVVNTVGAGDSMVAGFLAGLARGLSLEEALRFAVAAG 278 (303)
T ss_pred H------HHcCCCEEEEeecCCCcEEEeCCceEEeeCCcc---eeecCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7 566788999999999999998888888887654 7899999999999999999999999999999999999
Q ss_pred hhhhhhccccCCCCCCC
Q 019448 324 HVIIQRSGCTYPEKPEF 340 (341)
Q Consensus 324 a~~v~~~g~~~p~~~~~ 340 (341)
+++|++.|+..|+.+|+
T Consensus 279 a~~~~~~G~~~~~~~~~ 295 (303)
T TIGR03168 279 SAAAFSPGTGLPDPEDV 295 (303)
T ss_pred HHHhcCCCcCCCCHHHH
Confidence 99999999987877653
No 41
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=100.00 E-value=5.3e-39 Score=290.32 Aligned_cols=289 Identities=17% Similarity=0.174 Sum_probs=221.9
Q ss_pred EEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEEEee
Q 019448 7 LLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGC 86 (341)
Q Consensus 7 v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i~~ 86 (341)
++|.=++.+|..+.++ ++|..+ ..+..+...++||++.|+|++|++ ||.++.+++.
T Consensus 2 ~~~~~~p~~d~~~~~~--------------------~~~~~~-~~~~~~~~~~~GG~~~NvA~~la~---LG~~v~~i~~ 57 (309)
T TIGR01231 2 LTVTLNPSVDISYPLT--------------------ALKLDT-VNRVQEVSKTAGGKGLNVTRVLAQ---VGDPVLASGF 57 (309)
T ss_pred EEEEcchHHeEEEEcC--------------------CeeeCc-eEeeceeeecCCccHHHHHHHHHH---cCCCeEEEEE
Confidence 4566788899988776 444444 335567888999999999999998 5699999999
Q ss_pred eecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEeCCccceeecccccccCCcccCCC--cchhhhhccceEEEEe
Q 019448 87 IGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKK--PENWALVEKAKYFYIA 164 (341)
Q Consensus 87 vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~v~i~ 164 (341)
+|+ .+|+++++.|++.||+++++... ..|+.++.++.+|+|+++...++. +.++.... ......+.++|++|++
T Consensus 58 vG~-~~G~~i~~~l~~~GV~~~~~~~~-~~t~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~ 133 (309)
T TIGR01231 58 LGG-KLGEFIEKELDHSDIKHAFYKIS-GETRNCIAILHEGQQTEILEQGPE--ISNQEAAGFLKHFEQLLEKVEVVAIS 133 (309)
T ss_pred ecC-hhHHHHHHHHHHcCCceeEEECC-CCCEEeEEEEeCCCEEEEeCCCCC--CCHHHHHHHHHHHHHHhccCCEEEEE
Confidence 997 49999999999999999987653 357777666667888877665542 22111100 1123457899999999
Q ss_pred cccc-ccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCC-CCCCHHHHHH
Q 019448 165 GFFL-TVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGW-ETDDVEEIAL 242 (341)
Q Consensus 165 ~~~~-~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~-~~~d~~~~~~ 242 (341)
++.. ..+.+.+..+++.+++++.++++|+.... .+.+.+.++++|++++|++|++.+++.... +.++..++++
T Consensus 134 g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~-----~~~~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~ 208 (309)
T TIGR01231 134 GSLPKGLPQDYYAQIIERCQNKGVPVVLDCSGAT-----LQTVLENPAKPTVIKPNIEELSQLLNQELTEDLESLKQALS 208 (309)
T ss_pred CCCCCCcCHHHHHHHHHHHHhCCCeEEEECChHH-----HHHHHhccCCCeEEcCCHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 8753 24567888999999999999999997542 122445567899999999999999874211 1112233444
Q ss_pred HHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 019448 243 KLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYT 322 (341)
Q Consensus 243 ~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~~a~~~ 322 (341)
.+ ...|++.+|+|+|++|++++++++.++++++++ +++|||||||+|+|||+++|++|+++++|+++|+++
T Consensus 209 ~~------~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~v---~vvDttGAGDaF~agfl~~l~~g~~~~~a~~~a~a~ 279 (309)
T TIGR01231 209 QP------LFSGIEWIIVSLGAQGAFAKHGHTFYKVNIPTI---SVVNPVGSGDSTVAGITSALLNHESDHDLLKKANTL 279 (309)
T ss_pred HH------HHcCCCEEEEccCCCceEEEeCCeeEEeeCCcc---CcCCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44 456889999999999999998888888887654 789999999999999999999999999999999999
Q ss_pred hhhhhhhccccCCCC
Q 019448 323 SHVIIQRSGCTYPEK 337 (341)
Q Consensus 323 Aa~~v~~~g~~~p~~ 337 (341)
|++++++.+....+.
T Consensus 280 aa~~~~~~~~~~~~~ 294 (309)
T TIGR01231 280 GMLNAQEAQTGHVNL 294 (309)
T ss_pred HHHHhcCcccCCCCH
Confidence 999999888754443
No 42
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-38 Score=274.46 Aligned_cols=288 Identities=20% Similarity=0.190 Sum_probs=244.4
Q ss_pred EEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEEEee
Q 019448 7 LLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGC 86 (341)
Q Consensus 7 v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i~~ 86 (341)
+.+.=++.+|.+..+++ ...+++.+..+....+||+|.|||.+|+. +|.++..+|.
T Consensus 3 ~TvTLNPaiD~~~~l~~---------------------l~~g~vNr~~~~~~~aGGKGINVa~vL~~---lG~~~~a~Gf 58 (310)
T COG1105 3 YTVTLNPALDYTVFLDE---------------------LELGEVNRVRAVTKTAGGKGINVARVLKD---LGIPVTALGF 58 (310)
T ss_pred EEEecChhHhheeeccc---------------------ccccceeeeccceecCCCCceeHHHHHHH---cCCCceEEEe
Confidence 46667889999998863 45667778888899999999999999997 5699999999
Q ss_pred eecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEeCCc--cceeecccccccCCcccCCC-c-chhhhhccceEEE
Q 019448 87 IGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGE--RSLVANLSAANCYKSEHLKK-P-ENWALVEKAKYFY 162 (341)
Q Consensus 87 vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~v~ 162 (341)
+|.+ .|+.+.+.|++.||...++.+. +.|+.++.+.++.+ .+-+..++ +.++++++.. . .....+.+.|+|+
T Consensus 59 lGg~-tg~~~~~~l~~~gi~~~fv~v~-g~TRinvki~~~~~~~~Tein~~G--p~is~~~~~~~l~~~~~~l~~~d~Vv 134 (310)
T COG1105 59 LGGF-TGEFFVALLKDEGIPDAFVEVK-GDTRINVKILDEEDGEETEINFPG--PEISEAELEQFLEQLKALLESDDIVV 134 (310)
T ss_pred cCCc-cHHHHHHHHHhcCCCceEEEcc-CCCeeeEEEEecCCCcEEEecCCC--CCCCHHHHHHHHHHHHHhcccCCEEE
Confidence 9996 8999999999999999998865 46999988887533 44444444 5677766655 1 2223478899999
Q ss_pred Eecccc-ccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcC-CCcEEecCHHHHHHHhhhcCCCCCCHHHH
Q 019448 163 IAGFFL-TVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLP-YMDYIFGNETEARTFSKVQGWETDDVEEI 240 (341)
Q Consensus 163 i~~~~~-~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~-~~dvl~~n~~E~~~l~~~~~~~~~d~~~~ 240 (341)
++|+.+ .++.+.+.++++.+++.+.++.+|.+... +.+.++ ..++++||.+|++.+++....+..|..++
T Consensus 135 lsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg~~--------L~~~L~~~P~lIKPN~~EL~~~~g~~~~~~~d~i~~ 206 (310)
T COG1105 135 LSGSLPPGVPPDAYAELIRILRQQGAKVILDTSGEA--------LLAALEAKPWLIKPNREELEALFGRELTTLEDVIKA 206 (310)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECChHH--------HHHHHccCCcEEecCHHHHHHHhCCCCCChHHHHHH
Confidence 999764 67889999999999999999999999765 545554 48999999999999999877667788888
Q ss_pred HHHHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHHHHH
Q 019448 241 ALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGC 320 (341)
Q Consensus 241 ~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~~a~ 320 (341)
++.+ ...|++.|||++|++|+++.+++..++..+++ +++++++||||++.|||++++.+++++++++++|+
T Consensus 207 a~~l------~~~g~~~ViVSlG~~Gal~~~~~~~~~a~~p~---~~vvstVGAGDs~VAGf~~~~~~~~~~e~~l~~av 277 (310)
T COG1105 207 AREL------LAEGIENVIVSLGADGALLVTAEGVYFASPPK---VQVVSTVGAGDSMVAGFLAGLLKGKSLEEALRFAV 277 (310)
T ss_pred HHHH------HHCCCCEEEEEecCcccEEEccCCeEEEeCCC---cceecCcCchHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 8887 78899999999999999999999999888554 49999999999999999999999999999999999
Q ss_pred HHhhhhhhhccccCCCCCC
Q 019448 321 YTSHVIIQRSGCTYPEKPE 339 (341)
Q Consensus 321 ~~Aa~~v~~~g~~~p~~~~ 339 (341)
++|+.++++.+...|+.++
T Consensus 278 A~g~a~~~~~~~~~~~~~~ 296 (310)
T COG1105 278 ACGAAAASQKGTGIPDLDQ 296 (310)
T ss_pred HHHHHHhhcCCCCCCCHHH
Confidence 9999999999998887763
No 43
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=100.00 E-value=4.8e-38 Score=299.73 Aligned_cols=297 Identities=14% Similarity=0.131 Sum_probs=219.4
Q ss_pred CCceEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEE
Q 019448 3 QEGILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATS 82 (341)
Q Consensus 3 ~~~~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~ 82 (341)
...+|+|+|++++|++..++-+++ . .+.+............+|| ++|+|.++++ ||.++.
T Consensus 9 ~~~~ilviG~~~lD~~~~~~~~~~------------~----~~~~~~~~~~~~~~~~~GG-a~NvA~~la~---LG~~v~ 68 (473)
T PRK11316 9 ERAGVLVVGDVMLDRYWYGPTSRI------------S----PEAPVPVVKVNQIEERPGG-AANVAMNIAS---LGAQAR 68 (473)
T ss_pred CCCcEEEECccEEeeeeeccccee------------C----CCCCCCEEEeeeEEecCcH-HHHHHHHHHH---cCCcEE
Confidence 356899999999999987641100 0 0111123445567788999 6999999997 569999
Q ss_pred EEeeeecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEeCCccceeeccc-ccccCCcccCCCcchhhhhccceEE
Q 019448 83 YIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSLVANLS-AANCYKSEHLKKPENWALVEKAKYF 161 (341)
Q Consensus 83 ~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~v 161 (341)
++|.+|+|.+|+.+++.|++.||+++++...+.+|+.++.+++.+......... ....+.++.+.. .....+.+++++
T Consensus 69 ~i~~vG~D~~g~~i~~~L~~~gI~~~~v~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~l~~~~~v 147 (473)
T PRK11316 69 LVGLTGIDEAARALSKLLAAVGVKCDFVSVPTHPTITKLRVLSRNQQLIRLDFEEGFEGVDPQPLLE-RIEQALPSIGAL 147 (473)
T ss_pred EEEEEcCCHHHHHHHHHHHHcCCceeEEEcCCCCCCeeEEEEeCCceEEecccccCCCchhHHHHHH-HHHHHhccCCEE
Confidence 999999999999999999999999998876666788887777643332221111 111122222211 123457899999
Q ss_pred EEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCCHHHHH
Q 019448 162 YIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIA 241 (341)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~~~~~ 241 (341)
+++++... ..+.+..+++.+++++.++++||.... ...++++|++++|++|++.+++.. .+.++..+.+
T Consensus 148 ~is~~~~~-~~~~~~~~~~~~k~~g~~vv~Dp~~~~---------~~~~~~~dil~pN~~Ea~~l~g~~-~~~~~~~~~~ 216 (473)
T PRK11316 148 VLSDYAKG-ALASVQAMIQLARKAGVPVLIDPKGTD---------FERYRGATLLTPNLSEFEAVVGKC-KDEAELVEKG 216 (473)
T ss_pred EEecCCcc-chhHHHHHHHHHHhcCCeEEEeCCCCC---------ccccCCCeEECcCHHHHHHHhCCC-CCHHHHHHHH
Confidence 99865432 235678899999999999999997532 134678999999999999998731 1112233344
Q ss_pred HHHhcCCccccCCccEEEEEeCCCceEEEECCe-eEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHHHHH
Q 019448 242 LKLSQWPKASEIRKRTAVITQGADPVVVAQDGK-LKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGC 320 (341)
Q Consensus 242 ~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~-~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~~a~ 320 (341)
+.+. ...|++.++||+|++|++++++++ .+++|++++ +++||+||||+|.|||+++|++|+++++|+++|+
T Consensus 217 ~~l~-----~~~g~~~vvVT~G~~G~~~~~~~~~~~~~~~~~v---~vvDttGAGDaF~aa~~~~l~~g~~~~~al~~A~ 288 (473)
T PRK11316 217 MKLI-----ADYDLSALLVTRSEQGMTLLQPGKAPLHLPTQAR---EVYDVTGAGDTVISVLAAALAAGNSLEEACALAN 288 (473)
T ss_pred HHHH-----HhcCCCEEEEEecCCCcEEEecCCceEEecCcCC---CCCCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4442 356789999999999999887665 477777654 8899999999999999999999999999999999
Q ss_pred HHhhhhhhhccccCCCCCC
Q 019448 321 YTSHVIIQRSGCTYPEKPE 339 (341)
Q Consensus 321 ~~Aa~~v~~~g~~~p~~~~ 339 (341)
++|++++++.|+..|+.++
T Consensus 289 a~Aa~~v~~~G~~~~~~~~ 307 (473)
T PRK11316 289 AAAGVVVGKLGTSTVSPIE 307 (473)
T ss_pred HHHHhhcccCCCccCCHHH
Confidence 9999999999997666554
No 44
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=2.5e-36 Score=268.79 Aligned_cols=266 Identities=20% Similarity=0.279 Sum_probs=203.6
Q ss_pred eEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEEEe
Q 019448 6 ILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i~ 85 (341)
.|+|+|++++|++.... ......+||++.|+|.++++| | ++.++|
T Consensus 1 ~v~~~G~~~~D~~~~~~-------------------------------~~~~~~~GG~a~N~a~~la~l---g-~v~~i~ 45 (277)
T cd01946 1 SLLVVGSVAFDAIETPF-------------------------------GKVDKALGGSATYFSLSASYF---T-DVRLVG 45 (277)
T ss_pred CeEEEEEeeeeeecCCC-------------------------------ceeeeccCchHHHHHHHHHHh---c-cceeEE
Confidence 37999999999994221 113467899999999999984 4 599999
Q ss_pred eeecCchhHHHHHHHHhcCcceeeeec-CCCCceeEEEEE--e-CCccceeecccccccCCcccCCCcchhhhhccceEE
Q 019448 86 CIGKDKFGEEMKKNSKLAGVNVHYYED-ESASTGTCAVCV--V-GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYF 161 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~~-~~~~t~~~~~~~--~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 161 (341)
.+|+| +|+.+++.|+++||+++++.. ++..|....... + +++++.....+....+.++ ....+.+++++
T Consensus 46 ~vG~D-~g~~~~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~v 118 (277)
T cd01946 46 VVGED-FPEEDYKLLNSHNIVTLGLLSKEDGKTFHWAGRYHYDLNEADTLDTDLNVFADFDPQ------LPEHYKDSEFV 118 (277)
T ss_pred eccCc-ChHHHHHHHHhccCcceeEEEecCCCeEEEeeEehhhcccccchhhhhhHHhhcCCC------ChHHhhcCCEE
Confidence 99999 899999999999999998854 444442211110 0 2223322222211222221 12457889999
Q ss_pred EEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCCHHHHH
Q 019448 162 YIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIA 241 (341)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~~~~~ 241 (341)
|+++ ++++....+++.+++. .++++|+. ..|.....+.++++++++|++++|++|++.+++ .+++++++
T Consensus 119 ~~~~----~~~~~~~~~~~~~~~~-~~v~~D~~-~~~~~~~~~~~~~~l~~~d~~~~n~~E~~~l~g-----~~~~~~~~ 187 (277)
T cd01946 119 FLGN----IAPELQREVLEQVKDP-KLVVMDTM-NFWISIKPEKLKKVLAKVDVVIINDGEARQLTG-----AANLVKAA 187 (277)
T ss_pred EECC----CCHHHHHHHHHHHHhC-CEEEEccH-HHhhhhhHHHHHHHhccCCEEeCCHHHHHHHhC-----CchHHHHH
Confidence 9975 3567778888888877 78999984 345433456688899999999999999999976 24677888
Q ss_pred HHHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCC-----CHHHHH
Q 019448 242 LKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEK-----PIEECV 316 (341)
Q Consensus 242 ~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~-----~~~~a~ 316 (341)
+.+ .+.+++.+|+|+|.+|++++++++.+++|+++++ +++|||||||+|.|||+++|++++ ++++|+
T Consensus 188 ~~l------~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~--~~vDttGAGDaF~Agfl~~l~~~~~~~~~~~~~a~ 259 (277)
T cd01946 188 RLI------LAMGPKALIIKRGEYGALLFTDDGYFAAPAYPLE--SVFDPTGAGDTFAGGFIGYLASQKDTSEANMRRAI 259 (277)
T ss_pred HHH------HHcCCCEEEEecCCCcEEEEECCceEEcCCcccC--ccCCCCCchHHHHHHHHHHHHhCCCcchhhHHHHH
Confidence 888 6678899999999999999988888888876542 478999999999999999999884 699999
Q ss_pred HHHHHHhhhhhhhccc
Q 019448 317 RAGCYTSHVIIQRSGC 332 (341)
Q Consensus 317 ~~a~~~Aa~~v~~~g~ 332 (341)
++|+++|+++|++.|+
T Consensus 260 ~~a~~~aa~~~~~~G~ 275 (277)
T cd01946 260 IYGSAMASFCVEDFGT 275 (277)
T ss_pred HHhHHHHhhhhhhcCC
Confidence 9999999999999996
No 45
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=2.3e-35 Score=259.38 Aligned_cols=251 Identities=16% Similarity=0.118 Sum_probs=192.9
Q ss_pred eEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEEEe
Q 019448 6 ILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i~ 85 (341)
+|+++|++++|++...+ +....+||++.|+|.++++ +|.++.++|
T Consensus 1 ~il~iG~~~iD~~~~~~--------------------------------~~~~~~GG~~~Nva~~la~---lG~~~~~i~ 45 (254)
T cd01937 1 KIVIIGHVTIDEIVTNG--------------------------------SGVVKPGGPATYASLTLSR---LGLTVKLVT 45 (254)
T ss_pred CeEEEcceeEEEEecCC--------------------------------ceEEecCchhhhHHHHHHH---hCCCeEEEE
Confidence 68999999999997432 2467899999999999997 469999999
Q ss_pred eeecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEe-CCccceeecccccccCCcccCCCcchhhhhccceEEEEe
Q 019448 86 CIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIA 164 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~i~ 164 (341)
.+|+|.+|+ ++.|+++||++..+. ...|+.+.+..+ +|++.++.+.+........ ...+.++|++|++
T Consensus 46 ~vG~D~~g~--~~~l~~~gv~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 114 (254)
T cd01937 46 KVGRDYPDK--WSDLFDNGIEVISLL--STETTTFELNYTNEGRTRTLLAKCAAIPDTES-------PLSTITAEIVILG 114 (254)
T ss_pred eeCCCchHH--HHHHHHCCcEEEEec--CCCeEEEEEEecCCCCeeeeeccccCCccccc-------ccccCcccEEEEC
Confidence 999999999 688999999975443 234555545554 5677766655533222111 1247889999997
Q ss_pred ccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHH--HHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCCHHHHHH
Q 019448 165 GFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICE--FFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIAL 242 (341)
Q Consensus 165 ~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~--~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~~~~~~ 242 (341)
+. +++....+.+.+ .++++|+... |.. .....+.++++++|++++|++|++.+ .+++++++
T Consensus 115 ~~----~~~~~~~~~~~~----~~v~~D~~~~-~~~~~~~~~~~~~~l~~~di~~~n~~E~~~~--------~~~~~~~~ 177 (254)
T cd01937 115 PV----PEEISPSLFRKF----AFISLDAQGF-LRRANQEKLIKCVILKLHDVLKLSRVEAEVI--------STPTELAR 177 (254)
T ss_pred CC----cchhcHHHHhhh----hheeEccccc-eeeccccchHHHhhcccCcEEEEcHHHHhhc--------CCHHHHHH
Confidence 64 344444443332 6888898643 211 11222568899999999999999873 35778888
Q ss_pred HHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 019448 243 KLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYT 322 (341)
Q Consensus 243 ~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~~a~~~ 322 (341)
.+ ...|++.+|||+|++|++++++++.+++++++. +++|||||||+|+|||++++++|+++++|+++|+++
T Consensus 178 ~l------~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~---~~vdt~GAGD~f~a~~~~~l~~g~~~~~a~~~a~~~ 248 (254)
T cd01937 178 LI------KETGVKEIIVTDGEEGGYIFDGNGKYTIPASKK---DVVDPTGAGDVFLAAFLYSRLSGKDIKEAAEFAAAA 248 (254)
T ss_pred HH------HHcCCCEEEEeeCCcceEEEECCccEEccccCc---eeccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 87 567889999999999999998888888887654 789999999999999999999999999999999999
Q ss_pred hhhhhh
Q 019448 323 SHVIIQ 328 (341)
Q Consensus 323 Aa~~v~ 328 (341)
|+++|+
T Consensus 249 aa~~i~ 254 (254)
T cd01937 249 AAKFIE 254 (254)
T ss_pred HHHHhC
Confidence 999874
No 46
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=1.9e-35 Score=266.97 Aligned_cols=254 Identities=19% Similarity=0.239 Sum_probs=203.9
Q ss_pred CCceEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEE
Q 019448 3 QEGILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATS 82 (341)
Q Consensus 3 ~~~~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~ 82 (341)
+.++|+++|++++|++..+++ .....+||+++|+|.++++ ||.++.
T Consensus 10 ~~~~vlvvG~~~~D~i~~~g~-------------------------------~~~~~~GG~a~N~A~alar---LG~~~~ 55 (335)
T PLN02630 10 PQRRVLIVGNYCHDVLIQNGS-------------------------------VTAESLGGAASFISNVLDA---LSVECE 55 (335)
T ss_pred CCCCEEEEeeeeeeEEEeCCc-------------------------------EEEEecCcHHHHHHHHHHH---cCCceE
Confidence 567999999999999986531 1357899999999999998 569999
Q ss_pred EEeeeecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEeC------CccceeecccccccCCcccCCCcchhhhhc
Q 019448 83 YIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVG------GERSLVANLSAANCYKSEHLKKPENWALVE 156 (341)
Q Consensus 83 ~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 156 (341)
++|.+|+|.. .+++...+..++.+|+.+++++++ ++++++...+++..+++++++. ..+.
T Consensus 56 lis~VG~D~~----------~~v~~~~~~~~~~~T~~~~~~~~~g~~~~~~e~~i~~~~ga~~~l~~~di~~----~~~~ 121 (335)
T PLN02630 56 LVSKVGPDFL----------YQVSHPPIVIPDSKTTEFHADFDQGIDGNGHEDRVLKRVCACDPIEPSDIPD----MRYE 121 (335)
T ss_pred EEEEecCCcc----------ccccccceecCCCCceEEEEEEcCCcccCCCCeEEEEeccccCCCChHHCCH----HHhc
Confidence 9999999953 267665454466678888877754 3778888889999999999874 2467
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHh-----CCCeEEEeCCch---hHHHHHHHHHHhhcCCCcEEecCHHHHHHHhh
Q 019448 157 KAKYFYIAGFFLTVSPDSIQLVAEHAAA-----NNKVFMMNLSAP---FICEFFKDALEKVLPYMDYIFGNETEARTFSK 228 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~a~~-----~~~~v~~d~~~~---~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~ 228 (341)
..+++++.+ +.+++....+++.++. +++.+.+|+... .|. .....+.++++++|++++|++|+..+
T Consensus 122 ~~~~~~l~~---ei~~e~~~~~~~~a~~v~~D~~g~~~~~Dp~~~~~~~~~-~~~~~~~~~L~~iDil~~ne~Ea~~l-- 195 (335)
T PLN02630 122 FGMAVGVAG---EILPETLERMVEICDVVVVDIQALIRVFDPVDGTVKLVK-LEETGFYDMLPRIGFLKASSEEALFI-- 195 (335)
T ss_pred ccceeeecC---CCcHHHHHHHHHHhhhheeccCceEEecCCcccccccch-hhHHHHHHHHHhCCEEEecHHHHhhc--
Confidence 778888854 4567889999998988 788899999752 111 01123568899999999999999875
Q ss_pred hcCCCCCCHHHHHHHHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhc
Q 019448 229 VQGWETDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQ 308 (341)
Q Consensus 229 ~~~~~~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~ 308 (341)
+.+++. + ...+|||+|++|++++++++.+++|++++ +++|||||||+|+|||++++++
T Consensus 196 -------~~~~~~----------~--~~~vvvt~G~~G~~~~~~~~~~~~~~~~v---~~vDttGAGDaF~agfi~~l~~ 253 (335)
T PLN02630 196 -------DVEEVR----------Q--KCCVIVTNGKKGCRIYWKDGEMRVPPFPA---IQVDPTGAGDSFLGGFVAGLVQ 253 (335)
T ss_pred -------CHHHHc----------c--CCEEEEEECCCceEEEECCeeEEeCCCCC---CCCCCCChHHHHHHHHHHHHHc
Confidence 222221 1 13799999999999999888888887755 7899999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhhhhhhccc
Q 019448 309 EKPIEECVRAGCYTSHVIIQRSGC 332 (341)
Q Consensus 309 g~~~~~a~~~a~~~Aa~~v~~~g~ 332 (341)
|+++++|+++|+++|++++++.|.
T Consensus 254 g~~~~~a~~~A~a~aa~~v~~~G~ 277 (335)
T PLN02630 254 GLAVPDAALLGNYFGSLAVEQVGI 277 (335)
T ss_pred CCCHHHHHHHHHHHHHHHhCcCCC
Confidence 999999999999999999999996
No 47
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.2e-35 Score=256.44 Aligned_cols=296 Identities=16% Similarity=0.169 Sum_probs=233.2
Q ss_pred CceEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEE
Q 019448 4 EGILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSY 83 (341)
Q Consensus 4 ~~~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~ 83 (341)
+.+|+|+|++++|.|+..+-+++ ....+-.++.......++|| |+|+|.+++. ||.++.+
T Consensus 10 ~~kVLVvGDvmLDrY~~G~~~RI----------------SPEAPVPVv~v~~e~~rlGG-AaNVa~Nias---LGa~a~l 69 (467)
T COG2870 10 QAKVLVVGDVMLDRYWYGKVSRI----------------SPEAPVPVVKVEKEEERLGG-AANVAKNIAS---LGANAYL 69 (467)
T ss_pred CCcEEEEcceeeeeecccccccc----------------CCCCCCceEEeccccccccc-HHHHHHHHHH---cCCCEEE
Confidence 46899999999999999885544 33456677788888999999 8899999986 5699999
Q ss_pred EeeeecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEeCCccceeecccccccCC-cccCCCcchhhhhccceEEE
Q 019448 84 IGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYK-SEHLKKPENWALVEKAKYFY 162 (341)
Q Consensus 84 i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~v~ 162 (341)
+|.+|+|..|+.+...|...+++..++..+..+|.....++...+.-+..+.-...... ...+. ..+...+.+.|+++
T Consensus 70 ~GvvG~Deag~~L~~~l~~~~i~~~l~~~~~r~T~~K~Rv~s~nQQllRvD~Ee~~~~~~~~~ll-~~~~~~l~~~~~vV 148 (467)
T COG2870 70 VGVVGKDEAGKALIELLKANGIDSDLLRDKNRPTIVKLRVLSRNQQLLRLDFEEKFPIEDENKLL-EKIKNALKSFDALV 148 (467)
T ss_pred EEeeccchhHHHHHHHHHhcCcccceEeecCCCceeeeeeecccceEEEecccccCcchhHHHHH-HHHHHHhhcCCEEE
Confidence 99999999999999999999999888888888888877777544433322211111111 11111 22446789999999
Q ss_pred EeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCCHHHHHH
Q 019448 163 IAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIAL 242 (341)
Q Consensus 163 i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~~~~~~ 242 (341)
++.|.-..-.. ...+++.|+++++++.+||.+..+ +.+..+.++.||..|++...+.+..+ ++..+..+
T Consensus 149 LSDY~KG~L~~-~q~~I~~ar~~~~pVLvDPKg~Df---------~~Y~GAtLiTPN~~E~~~~vg~~~~e-~el~~~g~ 217 (467)
T COG2870 149 LSDYAKGVLTN-VQKMIDLAREAGIPVLVDPKGKDF---------EKYRGATLITPNLKEFEEAVGKCKSE-EELEERGQ 217 (467)
T ss_pred Eeccccccchh-HHHHHHHHHHcCCcEEECCCCcch---------hhhCCCeecCCCHHHHHHHHcccccH-HHHHHHHH
Confidence 99987433222 889999999999999999987542 45778999999999999998876433 33445455
Q ss_pred HHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 019448 243 KLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYT 322 (341)
Q Consensus 243 ~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~~a~~~ 322 (341)
+|. .+.+...++||++++|+.+++.++..|+|+..- ++.|.|||||+.+|.+..+|+.|.+++||+.+||++
T Consensus 218 kL~-----~~~~L~alLvTRsE~GMtL~~~~~~~h~pt~Ak---EVyDVTGAGDTVIa~la~~laaG~s~~eAc~lAN~A 289 (467)
T COG2870 218 KLK-----EELDLSALLVTRSEKGMTLFQEGKPLHFPARAK---EVYDVTGAGDTVIAVLAAALAAGASLEEACELANAA 289 (467)
T ss_pred HHH-----HhhCcceEEEEeccCCceeecCCcccccchhhe---eeeeccCCCchHHHHHHHHHHcCCCHHHHHHHhhhh
Confidence 553 345678999999999999999888888887643 899999999999999999999999999999999999
Q ss_pred hhhhhhhccccCCCCCC
Q 019448 323 SHVIIQRSGCTYPEKPE 339 (341)
Q Consensus 323 Aa~~v~~~g~~~p~~~~ 339 (341)
|+.++.+.|...-+.+|
T Consensus 290 agiVVgKlGTatvs~~E 306 (467)
T COG2870 290 AGIVVGKLGTATVSPEE 306 (467)
T ss_pred cceEEeeccceeecHHH
Confidence 99999999996544444
No 48
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-33 Score=230.18 Aligned_cols=290 Identities=17% Similarity=0.250 Sum_probs=231.0
Q ss_pred CCCCceEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCc
Q 019448 1 MAQEGILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGA 80 (341)
Q Consensus 1 ~~~~~~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~ 80 (341)
|..++.|+|.|.+.+|.+..+| +.|..+...+-.+..++.||.+.|++.+++. ||.+
T Consensus 1 m~~~k~VLcVG~~~lD~iTivd--------------------~~~fe~~~~r~~~g~wqRgG~asNvcTvlrl---LG~~ 57 (308)
T KOG2947|consen 1 MEEPKQVLCVGCTVLDVITIVD--------------------KYPFEDSEIRCLSGRWQRGGNASNVCTVLRL---LGAP 57 (308)
T ss_pred CCCcceEEEeccEEEEEEEecc--------------------CCCCCccceehhhhhhhcCCCcchHHHHHHH---hCCc
Confidence 6777899999999999999998 6788888888888899999999999999995 4699
Q ss_pred EEEEeeeecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEe--CCccceeecccccccCCcccCCCcchhhhhccc
Q 019448 81 TSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVV--GGERSLVANLSAANCYKSEHLKKPENWALVEKA 158 (341)
Q Consensus 81 v~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (341)
+.|+|.+.....-+++++.|++.||+++++...+...+...++++ .|.|+++......+..+.+++.+ -.+..+
T Consensus 58 cef~Gvlsr~~~f~~lLddl~~rgIdishcpftd~~pp~ssiI~~r~s~trTil~~dks~p~vT~~dF~k----vdl~qy 133 (308)
T KOG2947|consen 58 CEFFGVLSRGHVFRFLLDDLRRRGIDISHCPFTDHSPPFSSIIINRNSGTRTILYCDKSLPDVTATDFEK----VDLTQY 133 (308)
T ss_pred hheeeecccchhHHHHHHHHHhcCCCcccCccccCCCCcceEEEecCCCceEEEEecCCCccccHHHhhh----ccccee
Confidence 999999999888899999999999999998654445556556664 57888888878888888888875 458899
Q ss_pred eEEEEeccccccCHHHHHHHHHHHHh----CCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCC
Q 019448 159 KYFYIAGFFLTVSPDSIQLVAEHAAA----NNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWET 234 (341)
Q Consensus 159 ~~v~i~~~~~~~~~~~~~~~~~~a~~----~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~ 234 (341)
.|+|+.+..+......+..+++.-.+ .++.+.+|+-.+ ++.+.++...+|+++.+++=++.+.-
T Consensus 134 ~WihfE~Rnp~etlkM~~~I~~~N~r~pe~qrI~vSvd~en~------req~~~l~am~DyVf~sK~~a~~~gf------ 201 (308)
T KOG2947|consen 134 GWIHFEARNPSETLKMLQRIDAHNTRQPEEQRIRVSVDVENP------REQLFQLFAMCDYVFVSKDVAKHLGF------ 201 (308)
T ss_pred eeEEEecCChHHHHHHHHHHHHhhcCCCccceEEEEEEecCc------HHHHHHHhhcccEEEEEHHHHhhhcc------
Confidence 99999985422222233333332222 335578888654 35678899999999999998887642
Q ss_pred CCHHHHHHHHhcCCccccCCccEEEEEeCCCceEEE-ECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHH-hcCCCH
Q 019448 235 DDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVA-QDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQL-VQEKPI 312 (341)
Q Consensus 235 ~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~-~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l-~~g~~~ 312 (341)
.+++++++.+..-.+ ++..-+.+|+-++++|+-.. .+|+.+++++++.| ++||+.|+||+|.|||||++ ..+.++
T Consensus 202 ks~rea~~~l~~r~~-~~~pkpv~I~~w~~eGA~~l~adg~yfev~a~~pp--kvVD~lg~~DtF~A~vIyA~lk~~r~l 278 (308)
T KOG2947|consen 202 KSPREACEGLYGRVP-KGKPKPVLICPWASEGAGALGADGKYFEVDAFKPP--KVVDTLGAGDTFNAGVIYALLKQGRSL 278 (308)
T ss_pred CCHHHHHHHHHhhcc-cCCCCcEEEeccccccccccCCCCCEEecCCCCCc--cceeeccCCCcchHHHHHHHHHhhhhH
Confidence 468888888744322 23333568888999998554 56788999998654 99999999999999999995 568999
Q ss_pred HHHHHHHHHHhhhhhhhccc
Q 019448 313 EECVRAGCYTSHVIIQRSGC 332 (341)
Q Consensus 313 ~~a~~~a~~~Aa~~v~~~g~ 332 (341)
.||+.||+++|++++...|.
T Consensus 279 ~eAvdfg~rvas~Kl~g~Gf 298 (308)
T KOG2947|consen 279 AEAVDFGNRVASKKLGGQGF 298 (308)
T ss_pred HHHHHHHHHhhhcccccccc
Confidence 99999999999999999987
No 49
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.96 E-value=5.3e-29 Score=210.24 Aligned_cols=195 Identities=27% Similarity=0.360 Sum_probs=161.0
Q ss_pred eEEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEEEe
Q 019448 6 ILLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIG 85 (341)
Q Consensus 6 ~v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i~ 85 (341)
+|+++|++.+|.+..++ ++|..++..+..+....+||.+.|+|.++++ ||.++.++|
T Consensus 1 ~v~~iG~~~~D~~~~~~--------------------~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~---LG~~~~~~~ 57 (196)
T cd00287 1 RVLVVGSLLVDVILRVD--------------------ALPLPGGLVRPGDTEERAGGGAANVAVALAR---LGVSVTLVG 57 (196)
T ss_pred CEEEEccceEEEEEEec--------------------cCCCCCCeEEeceeeecCCCcHHHHHHHHHH---CCCcEEEEE
Confidence 48999999999999987 5677788888888999999999999999997 569999999
Q ss_pred eeecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhhhhccceEEEEec
Q 019448 86 CIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAG 165 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~i~~ 165 (341)
+|++|+++
T Consensus 58 ------------------------------------------------------------------------~~~v~i~~ 65 (196)
T cd00287 58 ------------------------------------------------------------------------ADAVVISG 65 (196)
T ss_pred ------------------------------------------------------------------------ccEEEEec
Confidence 78999998
Q ss_pred cccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCCHHHHHHHHh
Q 019448 166 FFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLS 245 (341)
Q Consensus 166 ~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~~~~~~~l~ 245 (341)
..+. .+.+.++++.+++.+.++++|+........ .+.+.++++++|++++|++|++.+++....+.++..++++.+
T Consensus 66 ~~~~--~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~-~~~~~~~~~~~dvl~~n~~E~~~l~~~~~~~~~~~~~~~~~l- 141 (196)
T cd00287 66 LSPA--PEAVLDALEEARRRGVPVVLDPGPRAVRLD-GEELEKLLPGVDILTPNEEEAEALTGRRDLEVKEAAEAAALL- 141 (196)
T ss_pred ccCc--HHHHHHHHHHHHHcCCeEEEeCCccccccc-cchHHHHHhhCCEECCCHHHHHHHhCCCCCChHHHHHHHHHH-
Confidence 6532 478888999999999999999986532211 122567899999999999999999875443333455677777
Q ss_pred cCCccccCCccEEEEEeCCCceEEEE-CCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHh
Q 019448 246 QWPKASEIRKRTAVITQGADPVVVAQ-DGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLV 307 (341)
Q Consensus 246 ~~~~~~~~~~~~vvvt~G~~G~~~~~-~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~ 307 (341)
...+++.+|+|+|++|+.+++ ++..+++|+++. +++||+||||+|+|||+++++
T Consensus 142 -----~~~g~~~vvvt~G~~g~~~~~~~~~~~~~~~~~~---~~vdt~GAGD~f~ag~~~~l~ 196 (196)
T cd00287 142 -----LSKGPKVVIVTLGEKGAIVATRGGTEVHVPAFPV---KVVDTTGAGDAFLAALAAGLA 196 (196)
T ss_pred -----HhcCCCEEEEEECCCccEEEecCCceEEcCCccC---CcccCCCchHHHHHHHHHHhC
Confidence 667889999999999999998 777777776543 789999999999999999874
No 50
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=99.82 E-value=2.9e-19 Score=156.95 Aligned_cols=165 Identities=15% Similarity=0.162 Sum_probs=125.3
Q ss_pred ccceEEEEeccc-cccCHHHHHHHHHHHHhC--CCeEEEeCC----chhH--HHHHHHHHHhhcC-CCcEEecCHHHHHH
Q 019448 156 EKAKYFYIAGFF-LTVSPDSIQLVAEHAAAN--NKVFMMNLS----APFI--CEFFKDALEKVLP-YMDYIFGNETEART 225 (341)
Q Consensus 156 ~~~~~v~i~~~~-~~~~~~~~~~~~~~a~~~--~~~v~~d~~----~~~~--~~~~~~~~~~~l~-~~dvl~~n~~E~~~ 225 (341)
...+++. .|+. .....+.+.++++.++++ +.++++||. ...| .+...+.+++++. ++|++++|.+|++.
T Consensus 71 ~~~~~v~-~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~dvi~pN~~Ea~~ 149 (254)
T cd01173 71 LEYDAVL-TGYLGSAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQFELEL 149 (254)
T ss_pred ccCCEEE-EecCCCHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHhcCCEECCcHHHHHH
Confidence 4567775 4443 233457788888888877 889999993 2222 2334556777776 99999999999999
Q ss_pred HhhhcCCCCCCHHHHHHHHhcCCccccCCccEEEEEeCCC------ceEEEECCeeEEEeceecCCCcccCCCCCchhhH
Q 019448 226 FSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQGAD------PVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFV 299 (341)
Q Consensus 226 l~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~------G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ 299 (341)
+++....+.++.+++++++ .+.|++.|+||.|.. |++++++++.+.++.+.+ +. ++|++||||+|+
T Consensus 150 l~g~~~~~~~~~~~~~~~l------~~~g~~~Vvit~g~~~~~~~~g~~~~~~~~~~~~~~~~~-~~-~~~~~GaGD~f~ 221 (254)
T cd01173 150 LTGKKINDLEDAKAAARAL------HAKGPKTVVVTSVELADDDRIEMLGSTATEAWLVQRPKI-PF-PAYFNGTGDLFA 221 (254)
T ss_pred HcCCCcCCHHHHHHHHHHH------HHhCCCEEEEEeeccCCCCcEEEEEEecCccEEEEeecc-CC-CCCcCChHHHHH
Confidence 9886443345667788887 667899999999985 788887766555554433 12 699999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhhhhh
Q 019448 300 GGFLSQLVQEKPIEECVRAGCYTSHVIIQR 329 (341)
Q Consensus 300 ag~~~~l~~g~~~~~a~~~a~~~Aa~~v~~ 329 (341)
|||+++|++|+++++|+++|++....+++.
T Consensus 222 a~~~~~l~~g~~~~~a~~~A~~~~~~~i~~ 251 (254)
T cd01173 222 ALLLARLLKGKSLAEALEKALNFVHEVLEA 251 (254)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998877754
No 51
>PRK12412 pyridoxal kinase; Reviewed
Probab=99.80 E-value=2.5e-18 Score=151.85 Aligned_cols=160 Identities=18% Similarity=0.157 Sum_probs=124.0
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHhCCCe-EEEeCCch------hHHHHH-HHHHHhhcCCCcEEecCHHHHHHHhhh
Q 019448 158 AKYFYIAGFFLTVSPDSIQLVAEHAAANNKV-FMMNLSAP------FICEFF-KDALEKVLPYMDYIFGNETEARTFSKV 229 (341)
Q Consensus 158 ~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~-v~~d~~~~------~~~~~~-~~~~~~~l~~~dvl~~n~~E~~~l~~~ 229 (341)
.|++.++- ..+.+.+..+.+.+++.+.+ +++||... ...... ....+.+++++|+++||..|++.|++.
T Consensus 73 ~~~ikiG~---l~~~~~v~~i~~~~~~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~g~ 149 (268)
T PRK12412 73 VDALKTGM---LGSVEIIEMVAETIEKHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNLFEAYQLSGV 149 (268)
T ss_pred CCEEEECC---CCCHHHHHHHHHHHHhcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhccceEEcCCHHHHHHHhCc
Confidence 78888753 34678888898889888875 99999531 111112 222446889999999999999999875
Q ss_pred cCCCCCCHHHHHHHHhcCCccccCCccEEEEEeCCCce------EEEECCeeEEEeceecCCCcccCCCCCchhhHHHHH
Q 019448 230 QGWETDDVEEIALKLSQWPKASEIRKRTAVITQGADPV------VVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFL 303 (341)
Q Consensus 230 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~------~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~ 303 (341)
...+.++..++++++ .+.|++.||||.|..|+ +++.++..++++.+. .+.+|++||||+|+|+|+
T Consensus 150 ~~~~~~~~~~aa~~l------~~~g~~~ViIt~G~~g~~~~~~~~~~~~~~~~~~~~~~---v~~~~t~GaGD~f~aa~a 220 (268)
T PRK12412 150 KINSLEDMKEAAKKI------HALGAKYVLIKGGSKLGTETAIDVLYDGETFDLLESEK---IDTTNTHGAGCTYSAAIT 220 (268)
T ss_pred CCCCHHHHHHHHHHH------HhcCCCEEEEeccCCCCCCceEEEEEeCCEEEEEEeCc---cCCCCCCchHHHHHHHHH
Confidence 433344677888888 67789999999998763 445555555666544 378899999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHhhhhhhh
Q 019448 304 SQLVQEKPIEECVRAGCYTSHVIIQR 329 (341)
Q Consensus 304 ~~l~~g~~~~~a~~~a~~~Aa~~v~~ 329 (341)
++|++|+++++|+++|..+...++.+
T Consensus 221 a~l~~g~~l~eA~~~A~~~~~~~i~~ 246 (268)
T PRK12412 221 AELAKGKPVKEAVKTAKEFITAAIRY 246 (268)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988875
No 52
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=99.79 E-value=1.4e-18 Score=155.07 Aligned_cols=163 Identities=12% Similarity=0.169 Sum_probs=117.8
Q ss_pred hccceEEEEecccc-ccCHHHHHHHHHHHHhCC--CeEEEeCC------chhHHHHHHHHH-HhhcCCCcEEecCHHHHH
Q 019448 155 VEKAKYFYIAGFFL-TVSPDSIQLVAEHAAANN--KVFMMNLS------APFICEFFKDAL-EKVLPYMDYIFGNETEAR 224 (341)
Q Consensus 155 l~~~~~v~i~~~~~-~~~~~~~~~~~~~a~~~~--~~v~~d~~------~~~~~~~~~~~~-~~~l~~~dvl~~n~~E~~ 224 (341)
+.+.|++ +.|+.. ....+.+.++++.+++.+ ..+++||. .....+...+.+ +++++++|++++|.+|++
T Consensus 72 ~~~~d~v-~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~~~~~~~~~~~ll~~adii~pN~~Ea~ 150 (286)
T TIGR00687 72 LNQCDAV-LSGYLGSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVAPDLLEVYREKAIPVADIITPNQFELE 150 (286)
T ss_pred cccCCEE-EECCCCCHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeChhHHHHHHHhccccccEecCCHHHHH
Confidence 4578887 455432 233467888888888775 56888992 111112233444 458899999999999999
Q ss_pred HHhhhcCCCCCCHHHHHHHHhcCCccccCCccEEEEE-eCCCce--------EEEECCeeEEEeceecCCCc-ccCCCCC
Q 019448 225 TFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVIT-QGADPV--------VVAQDGKLKKFPVIVLPKDK-LVDTNGA 294 (341)
Q Consensus 225 ~l~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~vvvt-~G~~G~--------~~~~~~~~~~~~~~~~~~~~-~vd~tGA 294 (341)
.+++....+.++..++++.+ .+.|++.+||| .|.+|+ +++++++.++++.+.. . ++|++||
T Consensus 151 ~L~g~~~~~~~~~~~~~~~l------~~~g~~~Viit~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~~Ga 221 (286)
T TIGR00687 151 LLTGRKINTVEEALAAADAL------IAMGPDIVLVTHLARAGSQRDRDFEGLVVTQEGRWHISRPLA---VFMRQPVGT 221 (286)
T ss_pred HHhCCCcCCHHHHHHHHHHH------HHhCCCEEEEEeccccCCCCCcceeEEEEcCCceEEEeccCc---CCCCCCCCh
Confidence 99885433334556677777 56788999999 688775 4455565666654433 4 6899999
Q ss_pred chhhHHHHHHHHhcCCCHHHHHHHHHHHhhhhh
Q 019448 295 GDAFVGGFLSQLVQEKPIEECVRAGCYTSHVII 327 (341)
Q Consensus 295 GDaf~ag~~~~l~~g~~~~~a~~~a~~~Aa~~v 327 (341)
||+|+|+|+++|++|+++++|+++|+++...++
T Consensus 222 GD~f~A~~l~~l~~g~~~~~al~~A~~~v~~~l 254 (286)
T TIGR00687 222 GDLIAALLLATLLHGNSLKEALEKTVSAVYHVL 254 (286)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999944444
No 53
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=99.79 E-value=4.7e-18 Score=149.12 Aligned_cols=160 Identities=18% Similarity=0.206 Sum_probs=124.4
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHhCCC-eEEEeCCch------hHHHHHHHHH-HhhcCCCcEEecCHHHHHHHhhh
Q 019448 158 AKYFYIAGFFLTVSPDSIQLVAEHAAANNK-VFMMNLSAP------FICEFFKDAL-EKVLPYMDYIFGNETEARTFSKV 229 (341)
Q Consensus 158 ~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~-~v~~d~~~~------~~~~~~~~~~-~~~l~~~dvl~~n~~E~~~l~~~ 229 (341)
.+.+.++- -.+.+.+..+++.+++++. ++++||... .+.....+.+ +.+++++|+++||..|++.|++.
T Consensus 68 ~~aikiG~---l~~~~~~~~i~~~~~~~~~~~vVlDPv~~~~~g~~l~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~ 144 (254)
T TIGR00097 68 VDAAKTGM---LASAEIVEAVARKLREYPVRPLVVDPVMVAKSGAPLLEEEAIEALRKRLLPLATLITPNLPEAEALLGT 144 (254)
T ss_pred CCEEEECC---cCCHHHHHHHHHHHHhcCCCcEEECCccccCCCCcCCCHHHHHHHHHhccccccEecCCHHHHHHHhCC
Confidence 56777642 3367889999999998888 699998521 1222222223 46889999999999999999885
Q ss_pred cCCCCCCHHHHHHHHhcCCccccCCccEEEEEeCC----Cce-EEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHH
Q 019448 230 QGWETDDVEEIALKLSQWPKASEIRKRTAVITQGA----DPV-VVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLS 304 (341)
Q Consensus 230 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~----~G~-~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~ 304 (341)
...+.++..++++.+ .+.|++.|+||.|. +|. +++++++.++++.+.+ +++|++|+||+|.|+|++
T Consensus 145 ~~~~~~~~~~~a~~l------~~~g~~~Vvvt~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~d~~GaGD~f~aalaa 215 (254)
T TIGR00097 145 KIRTEQDMIKAAKKL------RELGPKAVLIKGGHLEGDQAVDVLFDGGEIHILKAPRI---ETKNTHGTGCTLSAAIAA 215 (254)
T ss_pred CCCCHHHHHHHHHHH------HhcCCCEEEEeCCCCCCCceeEEEEECCeEEEEEeccc---CCCCCCChHHHHHHHHHH
Confidence 433334567788888 66789999999987 344 5577776677775544 789999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHhhhhhhh
Q 019448 305 QLVQEKPIEECVRAGCYTSHVIIQR 329 (341)
Q Consensus 305 ~l~~g~~~~~a~~~a~~~Aa~~v~~ 329 (341)
+|++|+++++|+++|++++...+++
T Consensus 216 ~la~g~~l~eA~~~A~~~~~~~i~~ 240 (254)
T TIGR00097 216 NLAKGLSLKEAVKEAKEFVTGAIRY 240 (254)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999975
No 54
>PRK05756 pyridoxamine kinase; Validated
Probab=99.78 E-value=3e-18 Score=152.98 Aligned_cols=165 Identities=17% Similarity=0.180 Sum_probs=121.4
Q ss_pred hccceEEEEecccc-ccCHHHHHHHHHHHHhCC--CeEEEeCCch-----hH-HHHHHHHH-HhhcCCCcEEecCHHHHH
Q 019448 155 VEKAKYFYIAGFFL-TVSPDSIQLVAEHAAANN--KVFMMNLSAP-----FI-CEFFKDAL-EKVLPYMDYIFGNETEAR 224 (341)
Q Consensus 155 l~~~~~v~i~~~~~-~~~~~~~~~~~~~a~~~~--~~v~~d~~~~-----~~-~~~~~~~~-~~~l~~~dvl~~n~~E~~ 224 (341)
+...+++ ++|+.. ....+.+.++++.+++.+ ..+++||--. .| .+...+.+ +.+++++|+++||..|++
T Consensus 72 l~~~~~v-~~G~l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll~~adiitpN~~Ea~ 150 (286)
T PRK05756 72 LGECDAV-LSGYLGSAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALPAADIITPNLFELE 150 (286)
T ss_pred cccCCEE-EECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhcccccEecCCHHHHH
Confidence 3467866 555432 234567888888888766 4577886311 11 11222233 458999999999999999
Q ss_pred HHhhhcCCCCCCHHHHHHHHhcCCccccCCccEEEEEeCCC--------ceEEEECCeeEEEeceecCCCcc-cCCCCCc
Q 019448 225 TFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQGAD--------PVVVAQDGKLKKFPVIVLPKDKL-VDTNGAG 295 (341)
Q Consensus 225 ~l~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~--------G~~~~~~~~~~~~~~~~~~~~~~-vd~tGAG 295 (341)
.|++....+.++..++++++ .+.|++.||||.|.. |++++++++.++++.+.+ +. +|++|||
T Consensus 151 ~L~g~~~~~~~~~~~~~~~l------~~~g~~~Vvvt~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~v~~~GaG 221 (286)
T PRK05756 151 WLSGRPVETLEDAVAAARAL------IARGPKIVLVTSLARAGYPADRFEMLLVTADGAWHISRPLV---DFMRQPVGVG 221 (286)
T ss_pred HHhCCCcCCHHHHHHHHHHH------HHhCCCEEEEeccccCCCCCCcEEEEEEECCceEEEecCcc---CCCCCCCChH
Confidence 99875433334556677777 567899999999876 477777776666664433 55 6999999
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHhhhhhhh
Q 019448 296 DAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQR 329 (341)
Q Consensus 296 Daf~ag~~~~l~~g~~~~~a~~~a~~~Aa~~v~~ 329 (341)
|+|+|+|+++|++|+++++|+++|++....+++.
T Consensus 222 D~f~a~~~a~l~~g~~~~~al~~A~~~~~~~i~~ 255 (286)
T PRK05756 222 DLTSALFLARLLQGGSLEEALEHTTAAVYEVMAR 255 (286)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988875
No 55
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=99.78 E-value=1e-17 Score=148.13 Aligned_cols=161 Identities=19% Similarity=0.230 Sum_probs=123.3
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhCCC-eEEEeCCc------hhHHHHHHHHH-HhhcCCCcEEecCHHHHHHHhh
Q 019448 157 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNK-VFMMNLSA------PFICEFFKDAL-EKVLPYMDYIFGNETEARTFSK 228 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~-~v~~d~~~------~~~~~~~~~~~-~~~l~~~dvl~~n~~E~~~l~~ 228 (341)
..+.+.++-. .+.+.+..+++.+++.+. ++++||.. ..+.....+.+ +++++++|+++||..|++.|++
T Consensus 73 ~~~ai~iG~l---~~~~~~~~i~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g 149 (266)
T PRK06427 73 RIDAVKIGML---ASAEIIETVAEALKRYPIPPVVLDPVMIAKSGDPLLADDAVAALRERLLPLATLITPNLPEAEALTG 149 (266)
T ss_pred CCCEEEECCc---CCHHHHHHHHHHHHhCCCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhCcCeEEcCCHHHHHHHhC
Confidence 4677777542 367788888888888775 79999842 12222222334 4689999999999999999987
Q ss_pred hcCCCCCC-HHHHHHHHhcCCccccCCccEEEEEeCC--Cce----EEEECCeeEEEeceecCCCcccCCCCCchhhHHH
Q 019448 229 VQGWETDD-VEEIALKLSQWPKASEIRKRTAVITQGA--DPV----VVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGG 301 (341)
Q Consensus 229 ~~~~~~~d-~~~~~~~l~~~~~~~~~~~~~vvvt~G~--~G~----~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag 301 (341)
....+.++ .+++++++ .+.|++.||||.|. +|. +++++++.++++.+.+ +.+|++|+||+|+|+
T Consensus 150 ~~~~~~~~~~~~~a~~l------~~~g~~~Vvit~g~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~GaGD~f~a~ 220 (266)
T PRK06427 150 LPIADTEDEMKAAARAL------HALGCKAVLIKGGHLLDGEESVDWLFDGEGEERFSAPRI---PTKNTHGTGCTLSAA 220 (266)
T ss_pred CCCCCcHHHHHHHHHHH------HhcCCCEEEEcCCCCCCCCceeEEEEeCCcEEEEEeeeE---CCCCCCChHHHHHHH
Confidence 54322233 56778887 66788999999998 553 5666666666666544 678999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhhhhhh
Q 019448 302 FLSQLVQEKPIEECVRAGCYTSHVIIQR 329 (341)
Q Consensus 302 ~~~~l~~g~~~~~a~~~a~~~Aa~~v~~ 329 (341)
|++++++|+++++|+++|+.+++.++++
T Consensus 221 l~~~l~~g~~l~~A~~~A~~~~~~~i~~ 248 (266)
T PRK06427 221 IAAELAKGASLLDAVQTAKDYVTRAIRH 248 (266)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999876
No 56
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=99.78 E-value=7.4e-18 Score=147.92 Aligned_cols=163 Identities=20% Similarity=0.184 Sum_probs=117.3
Q ss_pred ccceEEEEe-ccccccCHHHHHHHHHHHH-hCCCeEEEeCCch--hH----HHHHHHHHHhhcCCCcEEecCHHHHHHHh
Q 019448 156 EKAKYFYIA-GFFLTVSPDSIQLVAEHAA-ANNKVFMMNLSAP--FI----CEFFKDALEKVLPYMDYIFGNETEARTFS 227 (341)
Q Consensus 156 ~~~~~v~i~-~~~~~~~~~~~~~~~~~a~-~~~~~v~~d~~~~--~~----~~~~~~~~~~~l~~~dvl~~n~~E~~~l~ 227 (341)
...++..+. |+.+ +.+....+++.++ +.+.++++||... .| .+...+.++++++++|+++||++|++.|+
T Consensus 67 ~~~~~~~i~~G~l~--~~~~~~~~~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~~~dli~pN~~E~~~L~ 144 (253)
T PRK12413 67 KDVPFSAIKIGLLP--NVEIAEQALDFIKGHPGIPVVLDPVLVCKETHDVEVSELRQELIQFFPYVTVITPNLVEAELLS 144 (253)
T ss_pred hCCCCCEEEECCcC--CHHHHHHHHHHHHhCCCCCEEEcCceecCCCCccccHHHHHHHHHHhccCcEECCCHHHHHHHh
Confidence 344444544 3321 3455666666666 4678899997432 11 12234456678999999999999999999
Q ss_pred hhcCCCCCCHHHHHHHHhcCCccccCCccEEEEEeCCCc-----e-EEEECCeeEEEeceecCCCcccCCCCCchhhHHH
Q 019448 228 KVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQGADP-----V-VVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGG 301 (341)
Q Consensus 228 ~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G-----~-~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag 301 (341)
+....+.++.+++++++ .+.|++.||||.|++| . ++++++. .+.+.++. ..+|++||||+|+|+
T Consensus 145 g~~~~~~~~~~~~a~~l------~~~g~~~Vvvt~g~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~GaGDaf~a~ 214 (253)
T PRK12413 145 GKEIKTLEDMKEAAKKL------YDLGAKAVVIKGGNRLSQKKAIDLFYDGKE-FVILESPV---LEKNNIGAGCTFASS 214 (253)
T ss_pred CcCCCCHHHHHHHHHHH------HHcCCCEEEEeCCCCCCCCcceEEEEcCCE-EEEEeecc---cCCCCCChHHHHHHH
Confidence 86543444566778887 5678999999999864 2 3444443 44444443 668999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhhhhhhc
Q 019448 302 FLSQLVQEKPIEECVRAGCYTSHVIIQRS 330 (341)
Q Consensus 302 ~~~~l~~g~~~~~a~~~a~~~Aa~~v~~~ 330 (341)
|+++|.+|+++++|+++|.++...++++.
T Consensus 215 ~~~~l~~g~~l~ea~~~A~~~~~~~l~~~ 243 (253)
T PRK12413 215 IASQLVKGKSPLEAVKNSKDFVYQAIQQS 243 (253)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888763
No 57
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=99.77 E-value=1.8e-17 Score=144.57 Aligned_cols=160 Identities=20% Similarity=0.200 Sum_probs=122.1
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhC-CCeEEEeCCch------hHHHHHHHH-HHhhcCCCcEEecCHHHHHHHhh
Q 019448 157 KAKYFYIAGFFLTVSPDSIQLVAEHAAAN-NKVFMMNLSAP------FICEFFKDA-LEKVLPYMDYIFGNETEARTFSK 228 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~a~~~-~~~v~~d~~~~------~~~~~~~~~-~~~~l~~~dvl~~n~~E~~~l~~ 228 (341)
+.+++.++- -.+++.+..+.+.+++. +.++++||... .+.....+. .+.+++++|+++||..|++.|++
T Consensus 68 ~~~~i~~G~---l~~~~~~~~i~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g 144 (242)
T cd01169 68 PVDAIKIGM---LGSAEIIEAVAEALKDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELLTG 144 (242)
T ss_pred CCCEEEECC---CCCHHHHHHHHHHHHhCCCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCHHHHHHHhC
Confidence 568888742 23578888888888876 78899998532 111222222 34567999999999999999988
Q ss_pred hcCCCCCCHHHHHHHHhcCCccccCCccEEEEEeCCCc-----eEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHH
Q 019448 229 VQGWETDDVEEIALKLSQWPKASEIRKRTAVITQGADP-----VVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFL 303 (341)
Q Consensus 229 ~~~~~~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G-----~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~ 303 (341)
....+.++..++++.+ .+.|++.||||.|.+| .+++++++.++++.++. +++|++|+||+|+|+|+
T Consensus 145 ~~~~~~~~~~~~~~~l------~~~g~~~Vvit~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~GaGD~f~a~l~ 215 (242)
T cd01169 145 LEIATEEDMMKAAKAL------LALGAKAVLIKGGHLPGDEAVDVLYDGGGFFEFESPRI---DTKNTHGTGCTLSSAIA 215 (242)
T ss_pred CCCCCHHHHHHHHHHH------HhcCCCEEEEecCCCCCCceeEEEEECCcEEEEeccee---CCCCCCChHHHHHHHHH
Confidence 5433333455677777 5678899999999875 36667776777776654 68999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHhhhhhh
Q 019448 304 SQLVQEKPIEECVRAGCYTSHVIIQ 328 (341)
Q Consensus 304 ~~l~~g~~~~~a~~~a~~~Aa~~v~ 328 (341)
++|++|+++++|+++|+.+-...++
T Consensus 216 a~l~~g~~~~~A~~~A~~~~~~~i~ 240 (242)
T cd01169 216 ANLAKGLSLEEAVREAKEYVTQAIR 240 (242)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998877765
No 58
>PRK07105 pyridoxamine kinase; Validated
Probab=99.76 E-value=1.1e-17 Score=149.22 Aligned_cols=163 Identities=15% Similarity=0.139 Sum_probs=119.0
Q ss_pred cceEEEEeccccccCHHH---HHHHHHHHHhCCCeEEEeCCch----hH---HHHHHHHHHhhcCCCcEEecCHHHHHHH
Q 019448 157 KAKYFYIAGFFLTVSPDS---IQLVAEHAAANNKVFMMNLSAP----FI---CEFFKDALEKVLPYMDYIFGNETEARTF 226 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~---~~~~~~~a~~~~~~v~~d~~~~----~~---~~~~~~~~~~~l~~~dvl~~n~~E~~~l 226 (341)
..|++.++-. .+++. +.++++.+++.+.++++||... .| .+...+.++++++++|+++||..|++.|
T Consensus 75 ~~~aik~G~l---~~~~~~~~v~~~~~~~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L 151 (284)
T PRK07105 75 KFDAIYSGYL---GSPRQIQIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMRKLIQKADVITPNLTEACLL 151 (284)
T ss_pred ccCEEEECcC---CCHHHHHHHHHHHHHhccCCCeEEECCccccCCcCCCCCCHHHHHHHHHHHhhCCEecCCHHHHHHH
Confidence 5788886432 23444 4445555566678899999532 11 2234455778999999999999999999
Q ss_pred hhhcCC----CCCCHHHHHHHHhcCCccccCCccEEEEEe-----CCCceEEEECC--eeEEEeceecCCCcccCCCCCc
Q 019448 227 SKVQGW----ETDDVEEIALKLSQWPKASEIRKRTAVITQ-----GADPVVVAQDG--KLKKFPVIVLPKDKLVDTNGAG 295 (341)
Q Consensus 227 ~~~~~~----~~~d~~~~~~~l~~~~~~~~~~~~~vvvt~-----G~~G~~~~~~~--~~~~~~~~~~~~~~~vd~tGAG 295 (341)
++.... +.++..++++++ .+.|++.||||. |..|+++++++ ..++.+.+. ..+|++|||
T Consensus 152 ~g~~~~~~~~~~~~~~~~a~~l------~~~g~~~Vvvt~~~~~~g~~g~~~~~~~~~~~~~~~~~~----~~~~~~GaG 221 (284)
T PRK07105 152 LDKPYLEKSYSEEEIKQLLRKL------ADLGPKIVIITSVPFEDGKIGVAYYDRATDRFWKVFCKY----IPAHYPGTG 221 (284)
T ss_pred cCCCcCcCCCCHHHHHHHHHHH------HhcCCCEEEEcCeeeCCCeEEEEEEeCCCCeEEEEeecc----cCCCcCChh
Confidence 875321 233455677777 567889999998 67788888643 344444332 347999999
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHhhhhhhhccc
Q 019448 296 DAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQRSGC 332 (341)
Q Consensus 296 Daf~ag~~~~l~~g~~~~~a~~~a~~~Aa~~v~~~g~ 332 (341)
|+|+|+|+++|++|+++++|+++|+.++...+++...
T Consensus 222 D~f~aa~~~~l~~g~~l~~av~~A~~~~~~~i~~~~~ 258 (284)
T PRK07105 222 DIFTSVITGSLLQGDSLPIALDRAVQFIEKGIRATLG 258 (284)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999985433
No 59
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=99.75 E-value=2.2e-17 Score=146.76 Aligned_cols=165 Identities=15% Similarity=0.119 Sum_probs=117.3
Q ss_pred hccceEEEEeccccccCHHHHHHHHHHHHh--CCCeEEEeCCc------hhHHHHHHHHHH-hhcCCCcEEecCHHHHHH
Q 019448 155 VEKAKYFYIAGFFLTVSPDSIQLVAEHAAA--NNKVFMMNLSA------PFICEFFKDALE-KVLPYMDYIFGNETEART 225 (341)
Q Consensus 155 l~~~~~v~i~~~~~~~~~~~~~~~~~~a~~--~~~~v~~d~~~------~~~~~~~~~~~~-~~l~~~dvl~~n~~E~~~ 225 (341)
+.+.|+++++-.......+.+.++++..++ .+.++++||.- .+..+...+.++ .+++++|+++||..|++.
T Consensus 86 l~~~d~i~~G~l~s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~ 165 (281)
T PRK08176 86 LRQLRAVTTGYMGSASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQHLLPLAQGLTPNIFELEI 165 (281)
T ss_pred cccCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECccHHHHHHHHhHhhcCEeCCCHHHHHH
Confidence 347899998643311123445555555443 36789999951 111122233354 588999999999999999
Q ss_pred HhhhcCCCCCCHHHHHHHHhcCCccccCCccEEEEEeCCCc-------eEEEECCeeEEEeceecCCCcccCCCCCchhh
Q 019448 226 FSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQGADP-------VVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAF 298 (341)
Q Consensus 226 l~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G-------~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf 298 (341)
|++....+.++..++++++ .+.|++.||||.|..| ++++++++.+..+ .+. ..+|++|+||+|
T Consensus 166 L~g~~~~~~~~~~~~~~~l------~~~g~~~VvIT~g~~g~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~GaGD~f 235 (281)
T PRK08176 166 LTGKPCRTLDSAIAAAKSL------LSDTLKWVVITSAAGNEENQEMQVVVVTADSVNVIS-HPR---VDTDLKGTGDLF 235 (281)
T ss_pred HhCCCCCCHHHHHHHHHHH------HhcCCCEEEEeeccCCCCCCcEEEEEEeCCceEEEe-cCc---cCCCCCChhHHH
Confidence 9885433334556777887 6678999999999988 5667766544333 322 457999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhhhhh
Q 019448 299 VGGFLSQLVQEKPIEECVRAGCYTSHVIIQR 329 (341)
Q Consensus 299 ~ag~~~~l~~g~~~~~a~~~a~~~Aa~~v~~ 329 (341)
+|+|++++++|+++++|+++|+..-..+++.
T Consensus 236 aa~~~a~l~~g~~l~~Av~~A~~~v~~~i~~ 266 (281)
T PRK08176 236 CAELVSGLLKGKALTDAAHRAGLRVLEVMRY 266 (281)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888877753
No 60
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=99.74 E-value=4.2e-17 Score=153.77 Aligned_cols=150 Identities=19% Similarity=0.289 Sum_probs=118.0
Q ss_pred CHHHHHHHHHHHHhCCCeEEEeCCc------hhHHHHHHHH-HHhhcCCCcEEecCHHHHHHHhhhcCCCCCCHHHHHHH
Q 019448 171 SPDSIQLVAEHAAANNKVFMMNLSA------PFICEFFKDA-LEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALK 243 (341)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~v~~d~~~------~~~~~~~~~~-~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~~~~~~~ 243 (341)
+.+.+..+++.+++.+.++++||.. +.|.....+. .+++++++|++++|.+|++.|++....+.++.++++++
T Consensus 82 ~~e~~~~i~~~~k~~g~~vv~DPv~~~~sG~~l~~~~~~~~l~~~llp~adli~pN~~Ea~~L~g~~i~~~~d~~~aa~~ 161 (448)
T PRK08573 82 NREIIEAVAKTVSKYGFPLVVDPVMIAKSGAPLLREDAVDALIKRLLPLATVVTPNRPEAEKLTGMKIRSVEDARKAAKY 161 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhccCEEEcCCHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 5788999999999999999999842 2232222222 35788999999999999999988544344566677777
Q ss_pred HhcCCccc-cCCccEEEEEeCC----Cce-EEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHH
Q 019448 244 LSQWPKAS-EIRKRTAVITQGA----DPV-VVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVR 317 (341)
Q Consensus 244 l~~~~~~~-~~~~~~vvvt~G~----~G~-~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~ 317 (341)
+ . ..|++.||||.|. +|+ +++.++..++++.+++ +++|++||||+|+|+|+++|++|+++++|++
T Consensus 162 L------~~~~G~~~VvVt~G~~~g~~~~~~~~~~~~~~~~~~~~v---~~~dt~GAGDaFsAa~aa~l~~G~~l~eAl~ 232 (448)
T PRK08573 162 I------VEELGAEAVVVKGGHLEGEEAVDVLYHNGTFREFRAPRV---ESGCTHGTGCSFSAAIAAGLAKGLDPEEAIK 232 (448)
T ss_pred H------HHHcCCCEEEEecccCCCCceeEEEEECCeEEEEEecCc---CCCCCCChHHHHHHHHHHHHHcCCCHHHHHH
Confidence 7 4 3688999999885 344 4556666666765544 7899999999999999999999999999999
Q ss_pred HHHHHhhhhhhh
Q 019448 318 AGCYTSHVIIQR 329 (341)
Q Consensus 318 ~a~~~Aa~~v~~ 329 (341)
+|+.+...++++
T Consensus 233 ~A~~~~~~al~~ 244 (448)
T PRK08573 233 TAKKFITMAIKY 244 (448)
T ss_pred HHHHHHHHHHHH
Confidence 999999999983
No 61
>PRK12616 pyridoxal kinase; Reviewed
Probab=99.73 E-value=1.4e-16 Score=140.79 Aligned_cols=161 Identities=19% Similarity=0.186 Sum_probs=121.3
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhCCC-eEEEeCCchh------HHHHHHHHHH-hhcCCCcEEecCHHHHHHHhh
Q 019448 157 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNK-VFMMNLSAPF------ICEFFKDALE-KVLPYMDYIFGNETEARTFSK 228 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~-~v~~d~~~~~------~~~~~~~~~~-~~l~~~dvl~~n~~E~~~l~~ 228 (341)
..+.+.++- -.+.+.+..+.+.+++.+. ++++||-... ......+.++ .+++++|+++||..|++.|++
T Consensus 74 ~~~aikiG~---l~s~~~i~~i~~~l~~~~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~~Ea~~L~g 150 (270)
T PRK12616 74 GVDAMKTGM---LPTVDIIELAADTIKEKQLKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQLSG 150 (270)
T ss_pred CCCEEEECC---CCCHHHHHHHHHHHHhcCCCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCHHHHHHHcC
Confidence 357777743 2367788888888888764 5889996421 1112223344 488899999999999999987
Q ss_pred h-cCCCCCCHHHHHHHHhcCCccccCCccEEEEEeCCCce------EEEECCeeEEEeceecCCCcccCCCCCchhhHHH
Q 019448 229 V-QGWETDDVEEIALKLSQWPKASEIRKRTAVITQGADPV------VVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGG 301 (341)
Q Consensus 229 ~-~~~~~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~------~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag 301 (341)
. ...+.++.+++++++ .+.|++.||||.|..|. ++++++..++++.+.+ +..|++||||+|+|+
T Consensus 151 ~~~~~~~~~~~~aa~~l------~~~G~~~VvVt~G~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~t~GaGD~fsaa 221 (270)
T PRK12616 151 MGEIKTVEQMKEAAKKI------HELGAQYVVITGGGKLKHEKAVDVLYDGETAEVLESEMI---DTPYTHGAGCTFSAA 221 (270)
T ss_pred CCCCCCHHHHHHHHHHH------HHcCCCEEEEeCCCCCcCCceEEEEEECCeEEEEEeeee---CCCCCCcHHHHHHHH
Confidence 4 233344567778887 66789999999998762 5566666566665444 778999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhhhhhhh
Q 019448 302 FLSQLVQEKPIEECVRAGCYTSHVIIQR 329 (341)
Q Consensus 302 ~~~~l~~g~~~~~a~~~a~~~Aa~~v~~ 329 (341)
|+++|++|+++++|+++|..+....++.
T Consensus 222 laa~l~~g~~l~~Av~~A~~~~~~~i~~ 249 (270)
T PRK12616 222 VTAELAKGSEVKEAIYAAKEFITAAIKE 249 (270)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888875
No 62
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=99.66 E-value=9.6e-16 Score=136.81 Aligned_cols=243 Identities=18% Similarity=0.250 Sum_probs=162.5
Q ss_pred EEEEcCceeeeEeecChhHHHHhCCCCCceEecccccccHHHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEEEee
Q 019448 7 LLGMGNPLLDISSVVDDDFLNKYDIKLNNAILAEEKHLPLYDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGC 86 (341)
Q Consensus 7 v~~iG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i~~ 86 (341)
=+++|...+|+....|++- ..+.........+..||.+.|.|.++++ +|.++.|+++
T Consensus 343 Pv~vGa~i~D~~~k~d~d~--------------------K~dG~sy~~~~~Qa~GGVarN~A~a~~~---lg~d~~liSa 399 (614)
T KOG3009|consen 343 PVSVGATIVDFEAKTDEDV--------------------KDDGGSYNGQVVQAMGGVARNHADALAR---LGCDSVLISA 399 (614)
T ss_pred ceeecceEEEeEEeecccc--------------------cccCCcccchhhhhccchhhhHHHHHHH---hcCCeeEEEE
Confidence 3899999999999998531 2223333455678999999999999997 4699999999
Q ss_pred eecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhhhhccceEEEEecc
Q 019448 87 IGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGF 166 (341)
Q Consensus 87 vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~i~~~ 166 (341)
||+|..|++.+. . . .+.+. ..+.+-+++++++++
T Consensus 400 vG~d~n~~~~~~----------------------------------~------~--~~~~e---~~~dl~~a~~I~~Ds- 433 (614)
T KOG3009|consen 400 VGDDNNGHFFRQ----------------------------------N------S--HKIVE---SNEDLLSADFILLDS- 433 (614)
T ss_pred eccCCcchhhhh----------------------------------h------h--hhhhh---hhhhhhcCCEEEEcC-
Confidence 999931111100 0 0 00011 012233899999987
Q ss_pred ccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcC-CCcEEecCHHHHHHHhhhcCC--C------CCCH
Q 019448 167 FLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLP-YMDYIFGNETEARTFSKVQGW--E------TDDV 237 (341)
Q Consensus 167 ~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~-~~dvl~~n~~E~~~l~~~~~~--~------~~d~ 237 (341)
++++..+..+++ ++.+..+++++|.+.... ...++-++. .++.+.||..|+-.....+.. + .+..
T Consensus 434 --NiS~~~Ma~il~-ak~~k~~V~fEPTd~~k~---~K~fk~l~v~~i~~i~PN~~Ell~a~k~~~v~~nps~~q~~~~~ 507 (614)
T KOG3009|consen 434 --NISVPVMARILE-AKKHKKQVWFEPTDIDKV---KKVFKTLLVGAITAISPNANELLKAAKLCHVSVNPSVIQTADGV 507 (614)
T ss_pred --CCCHHHHHHHHH-hhhccCceEecCCCchhh---hhhhhhcceeeEEeeCCCHHHHHHHhhcCceeeChhhhccchHH
Confidence 789999999998 999999999999764321 111323332 378999999999543322211 1 1111
Q ss_pred HHHHHHHhcCCccccCCccEEEEEeCCCceEEEECCe-----eEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCH
Q 019448 238 EEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGK-----LKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPI 312 (341)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~-----~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~ 312 (341)
.+.++.+.+ +.......+|+|..++|+++.-.++ ....+++. ...++++..||||+|.++|+++++.+.++
T Consensus 508 ~~~~~~~~~---k~~~~~s~~I~tl~~~G~l~~yr~k~g~l~~~s~~p~~-~~~n~vsvsgaGdsf~~g~i~~l~~~~~v 583 (614)
T KOG3009|consen 508 LELIEKEKT---KLLLNTSIFIVTLANKGSLVVYRNKLGQLEFQSLPPPL-QMNNVVSVSGAGDSFNSGVIAGLAHNKTV 583 (614)
T ss_pred HHHHHHHHH---HhhcccceEEEEeccCceEEEecCCCCCcccccCCCcc-cccceeEeccCCcccccceeehhhcCcch
Confidence 222222211 1345567899999999997754332 23333332 25589999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhh
Q 019448 313 EECVRAGCYTSHVIIQ 328 (341)
Q Consensus 313 ~~a~~~a~~~Aa~~v~ 328 (341)
.+++.-+..|+...++
T Consensus 584 ~es~~gg~~~~ralls 599 (614)
T KOG3009|consen 584 VESLQGGQECARALLS 599 (614)
T ss_pred HhhccccHHHHHHHHh
Confidence 9999999666555443
No 63
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.59 E-value=3.9e-14 Score=135.86 Aligned_cols=161 Identities=14% Similarity=0.152 Sum_probs=120.5
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHhCCCe-EEEeCCc------hhHHHHHHHHH-HhhcCCCcEEecCHHHHHHHhhh
Q 019448 158 AKYFYIAGFFLTVSPDSIQLVAEHAAANNKV-FMMNLSA------PFICEFFKDAL-EKVLPYMDYIFGNETEARTFSKV 229 (341)
Q Consensus 158 ~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~-v~~d~~~------~~~~~~~~~~~-~~~l~~~dvl~~n~~E~~~l~~~ 229 (341)
.+++.++- ..+.+.+..+++.+++.+.+ +++||.. ........+.+ .++++++|+++||..|++.|++.
T Consensus 79 ~~aik~G~---l~~~~~i~~i~~~l~~~~~~~vVlDPV~~~~~G~~l~~~~~~~~l~~~Ll~~adiitPN~~Ea~~L~g~ 155 (502)
T PLN02898 79 VDVVKTGM---LPSAEIVKVLCQALKEFPVKALVVDPVMVSTSGDVLAGPSILSALREELLPLATIVTPNVKEASALLGG 155 (502)
T ss_pred CCEEEECC---cCCHHHHHHHHHHHHhCCCCCEEEccccccCCCCccCCHHHHHHHHHhhhccCeEEcCCHHHHHHHhCC
Confidence 56666643 23578888888888888774 9999942 11112223334 36889999999999999999863
Q ss_pred c-CCCCCCHHHHHHHHhcCCccccCCccEEEEEeCCCc------eEEEECCeeEEEeceecCCCcccCCCCCchhhHHHH
Q 019448 230 Q-GWETDDVEEIALKLSQWPKASEIRKRTAVITQGADP------VVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGF 302 (341)
Q Consensus 230 ~-~~~~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G------~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~ 302 (341)
. ..+.++..++++++ .+.|++.||||.|..+ .++++++..++++.+.+ +.+|++|+||+|+|+|
T Consensus 156 ~~~~~~~~~~~~a~~l------~~~G~~~VvItgg~~~~~~~~~~~l~~~~~~~~~~~~~i---~~~~t~GaGD~fsaai 226 (502)
T PLN02898 156 DPLETVADMRSAAKEL------HKLGPRYVLVKGGHLPDSLDAVDVLYDGTEFHELRSSRI---KTRNTHGTGCTLASCI 226 (502)
T ss_pred CCCCCHHHHHHHHHHH------HhcCCCEEEEcCCCCCCCCcceEEEEcCCeEEEEeccee---CCCCCCchhhhHHHHH
Confidence 2 22234566777777 6678899999998753 35666666566665544 6789999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHhhhhhhhc
Q 019448 303 LSQLVQEKPIEECVRAGCYTSHVIIQRS 330 (341)
Q Consensus 303 ~~~l~~g~~~~~a~~~a~~~Aa~~v~~~ 330 (341)
++++++|+++++|+++|+.+...++.+.
T Consensus 227 aa~l~~G~~l~eAv~~A~~~v~~ai~~~ 254 (502)
T PLN02898 227 AAELAKGSDMLSAVKVAKRYVETALEYS 254 (502)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999763
No 64
>PTZ00344 pyridoxal kinase; Provisional
Probab=99.57 E-value=7.6e-14 Score=125.06 Aligned_cols=157 Identities=24% Similarity=0.246 Sum_probs=105.4
Q ss_pred EEEEeccccccCHHHHHHHHH---HHHhCC--CeEEEeCCc----hhHH-HHHHHHHHhhcCCCcEEecCHHHHHHHhhh
Q 019448 160 YFYIAGFFLTVSPDSIQLVAE---HAAANN--KVFMMNLSA----PFIC-EFFKDALEKVLPYMDYIFGNETEARTFSKV 229 (341)
Q Consensus 160 ~v~i~~~~~~~~~~~~~~~~~---~a~~~~--~~v~~d~~~----~~~~-~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~ 229 (341)
.++++|+.+ +.+.+..+++ .+++++ +++++||-- ..|. +...+.++++++++|++++|++|++.|++.
T Consensus 79 ~~v~sG~l~--~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~~ll~~~dii~pN~~E~~~L~g~ 156 (296)
T PTZ00344 79 TYVLTGYIN--SADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDAYRELIPYADVITPNQFEASLLSGV 156 (296)
T ss_pred CEEEECCCC--CHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHHHHHHhhhCCEEeCCHHHHHHHhCC
Confidence 445555443 4555554444 445555 478889532 1122 335566778899999999999999999885
Q ss_pred cCCCCCCHHHHHHHHhcCCccccCCccEEEEE---eCCCc----eEEEE--C----CeeEEEeceecCCCcccCCCCCch
Q 019448 230 QGWETDDVEEIALKLSQWPKASEIRKRTAVIT---QGADP----VVVAQ--D----GKLKKFPVIVLPKDKLVDTNGAGD 296 (341)
Q Consensus 230 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~vvvt---~G~~G----~~~~~--~----~~~~~~~~~~~~~~~~vd~tGAGD 296 (341)
...+.++..++++++ .+.|++.|||| .|.+| +++.+ . ++.+.+..+. .+ ++++|+||
T Consensus 157 ~~~~~~~~~~~~~~l------~~~g~~~VvVTg~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~---~~-~~~~GaGD 226 (296)
T PTZ00344 157 EVKDLSDALEAIDWF------HEQGIPVVVITSFREDEDPTHLRFLLSCRDKDTKNNKRFTGKVPY---IE-GRYTGTGD 226 (296)
T ss_pred CCCCHHHHHHHHHHH------HHhCCCEEEEEeecCCCCCCcEEEEEEeccccCCCceeEEEeccc---cC-CCCCCchH
Confidence 322233455677777 56688999999 55556 44432 1 2234444322 23 57799999
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHhhhhhhh
Q 019448 297 AFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQR 329 (341)
Q Consensus 297 af~ag~~~~l~~g~~~~~a~~~a~~~Aa~~v~~ 329 (341)
+|+|+|++.+.+| ++++|+++|.+.-..+++.
T Consensus 227 ~f~A~~~a~l~~g-~~~~a~~~A~a~~~~~i~~ 258 (296)
T PTZ00344 227 LFAALLLAFSHQH-PMDLAVGKAMGVLQDIIKA 258 (296)
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHH
Confidence 9999999888888 9999999999888777754
No 65
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=99.56 E-value=9.9e-14 Score=133.16 Aligned_cols=163 Identities=15% Similarity=0.203 Sum_probs=115.4
Q ss_pred hhccceEEEE-eccccccCHHHHHHHHHHHHhCCCeEEEeCCch------hHHHH----HHHHHH-hhcCCCcEEecCHH
Q 019448 154 LVEKAKYFYI-AGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAP------FICEF----FKDALE-KVLPYMDYIFGNET 221 (341)
Q Consensus 154 ~l~~~~~v~i-~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~------~~~~~----~~~~~~-~~l~~~dvl~~n~~ 221 (341)
.+++.++..+ .|+ ..+.+.+..+++.++ +.++++||-.. .+... ..+.++ ++++.+|+++||..
T Consensus 294 l~~d~~~~~Ik~G~--l~s~e~i~~i~~~l~--~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~~advitPN~~ 369 (504)
T PTZ00347 294 VMSDFNISVVKLGL--VPTARQLEIVIEKLK--NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFPMATIITPNIP 369 (504)
T ss_pred HHhCCCCCEEEECC--cCCHHHHHHHHHHhc--CCCEEEcccceeCCCCcccchhHHHHHHHHHHHhccCcceEEeCCHH
Confidence 3444444443 332 235777787777775 56788997431 11111 122233 68899999999999
Q ss_pred HHHHHhhhc-CCCCCCHHHHHHHHhcCCccccCCccEEEEEeCCCc-------eEEEEC--CeeEEEeceecCCCcccCC
Q 019448 222 EARTFSKVQ-GWETDDVEEIALKLSQWPKASEIRKRTAVITQGADP-------VVVAQD--GKLKKFPVIVLPKDKLVDT 291 (341)
Q Consensus 222 E~~~l~~~~-~~~~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G-------~~~~~~--~~~~~~~~~~~~~~~~vd~ 291 (341)
|++.|++.. ..+.++..++++.+ .+.|++.||||.|.+| ..++.+ +..++++.+.+ +++|+
T Consensus 370 Ea~~L~g~~~~~~~~~~~~aa~~l------~~~G~~~VvVtgg~~~~~~~~~~~~l~~~~~~~~~~~~~~~i---~~~~~ 440 (504)
T PTZ00347 370 EAERILGRKEITGVYEARAAAQAL------AQYGSRYVLVKGGHDLIDPEACRDVLYDREKDRFYEFTANRI---ATINT 440 (504)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHH------HhcCCCEEEEeCCCCCcCCCcceEEEEcCCCCeEEEEEeeeE---CCCCC
Confidence 999998852 22233556777777 5678999999999863 344543 34566776544 77899
Q ss_pred CCCchhhHHHHHHHHhcCCCHHHHHHHHHHHhhhhhhh
Q 019448 292 NGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQR 329 (341)
Q Consensus 292 tGAGDaf~ag~~~~l~~g~~~~~a~~~a~~~Aa~~v~~ 329 (341)
+|+||+|+|+++++|++|+++++|+++|..+-...+..
T Consensus 441 ~GaGD~fsaaiaa~la~G~~l~eAv~~A~~~v~~~i~~ 478 (504)
T PTZ00347 441 HGTGCTLASAISSFLARGYTVPDAVERAIGYVHEAIVR 478 (504)
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998887777754
No 66
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=99.55 E-value=1e-13 Score=120.89 Aligned_cols=160 Identities=21% Similarity=0.223 Sum_probs=115.8
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCch------hHHHHHHHHHHh-hcCCCcEEecCHHHHHHHhhh
Q 019448 157 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAP------FICEFFKDALEK-VLPYMDYIFGNETEARTFSKV 229 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~------~~~~~~~~~~~~-~l~~~dvl~~n~~E~~~l~~~ 229 (341)
..+.+.++- -.+.+.+..+.+..+..+.++++||--. ...+...+.+++ +++++|++.||..|++.|++.
T Consensus 60 ~~~aikiG~---l~~~~~v~~i~~~l~~~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~Ea~~L~g~ 136 (246)
T PF08543_consen 60 KFDAIKIGY---LGSAEQVEIIADFLKKPKIPVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTEAELLTGR 136 (246)
T ss_dssp C-SEEEE-S----SSHHHHHHHHHHHHHTTTEEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHHHHHHHTS
T ss_pred cccEEEEcc---cCCchhhhhHHHHHhccCCCEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHHHHHHhCC
Confidence 578888753 2366777777777777778999999321 122334455555 999999999999999999996
Q ss_pred cCCCCCCHHHHHHHHhcCCccccCCccEEEEEeCCC----c---eEEEECCeeEEEeceecCCCcccCCCCCchhhHHHH
Q 019448 230 QGWETDDVEEIALKLSQWPKASEIRKRTAVITQGAD----P---VVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGF 302 (341)
Q Consensus 230 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~----G---~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~ 302 (341)
...+.++..++++++ .+.|++.||||-+.. + ..++++++.+.+..+.+ ...+..|.||+|.|++
T Consensus 137 ~i~~~~~~~~~~~~l------~~~G~~~VvItg~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~GTGd~fss~l 207 (246)
T PF08543_consen 137 EINSEEDIEEAAKAL------LALGPKNVVITGGHLDGDEGIITDVLYDGGEFYWLSSPRI---PTGSFHGTGDLFSSAL 207 (246)
T ss_dssp --SSHHHHHHHHHHH------HHTS-SEEEEEEEEGGSSCEEEEEEEETTSEEEEEEEEEE---CTSGCTTHHHHHHHHH
T ss_pred CCCChHhHHHHHHHH------HHhCCceEEEeeeccccccccccceeeeccceeecceeEE---cCCCCCCchhHHHHHH
Confidence 555566778888888 678999999998762 2 34455666666665544 3468899999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHhhhhhh
Q 019448 303 LSQLVQEKPIEECVRAGCYTSHVIIQ 328 (341)
Q Consensus 303 ~~~l~~g~~~~~a~~~a~~~Aa~~v~ 328 (341)
++.|++|+++++|++.|...-...++
T Consensus 208 aa~l~~g~~l~~Av~~A~~~v~~~i~ 233 (246)
T PF08543_consen 208 AAFLAKGYSLEEAVEKAKNFVRRAIK 233 (246)
T ss_dssp HHHHHTTSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988887776
No 67
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=99.55 E-value=1.1e-13 Score=121.63 Aligned_cols=161 Identities=17% Similarity=0.067 Sum_probs=114.4
Q ss_pred hhccceEEEEeccccccCH-HHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCC
Q 019448 154 LVEKAKYFYIAGFFLTVSP-DSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGW 232 (341)
Q Consensus 154 ~l~~~~~v~i~~~~~~~~~-~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~ 232 (341)
.+.+.|++++++. ++. +.+..+++.+++++.++++|+..........+ . .+.+..+++.||..|++.|++....
T Consensus 74 ~~~~~d~v~ig~g---l~~~~~~~~i~~~~~~~~~pvVlDa~~~~~~~~~~~-~-~~~~~~~iltPn~~E~~~L~g~~~~ 148 (254)
T cd01171 74 LLERADAVVIGPG---LGRDEEAAEILEKALAKDKPLVLDADALNLLADEPS-L-IKRYGPVVLTPHPGEFARLLGALVE 148 (254)
T ss_pred hhccCCEEEEecC---CCCCHHHHHHHHHHHhcCCCEEEEcHHHHHhhcChh-h-hccCCCEEECCCHHHHHHHhCCChh
Confidence 4567899999752 332 77888888888889999999975432111100 0 2456789999999999999875322
Q ss_pred C-CCCHHHHHHHHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCC
Q 019448 233 E-TDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKP 311 (341)
Q Consensus 233 ~-~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~ 311 (341)
+ .++..++++++ .+.+ +.+|++.|. +.+++++++.++++... ...++++|+||+|+|.+.+.+.+|++
T Consensus 149 ~~~~~~~~~a~~l------~~~~-~~~vvlkG~-~~~i~~~~~~~~~~~~~---~~~~~~~GaGD~lag~iaa~la~g~~ 217 (254)
T cd01171 149 EIQADRLAAAREA------AAKL-GATVVLKGA-VTVIADPDGRVYVNPTG---NPGLATGGSGDVLAGIIAALLAQGLS 217 (254)
T ss_pred hhhhHHHHHHHHH------HHHc-CcEEEEcCC-CCEEECCCCcEEEECCC---CcccccCchHHHHHHHHHHHHHcCCC
Confidence 2 22345667777 3444 346666674 56666654445555443 37889999999998888888889999
Q ss_pred HHHHHHHHHHHhhhhhhhc
Q 019448 312 IEECVRAGCYTSHVIIQRS 330 (341)
Q Consensus 312 ~~~a~~~a~~~Aa~~v~~~ 330 (341)
+++|+++|+.+.+.+.+..
T Consensus 218 ~~eA~~~A~~~~~~a~~~~ 236 (254)
T cd01171 218 PLEAAALAVYLHGLAGDLA 236 (254)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888754
No 68
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=99.51 E-value=5.2e-13 Score=114.12 Aligned_cols=149 Identities=22% Similarity=0.278 Sum_probs=119.7
Q ss_pred CHHHHHHHHHHHHhCC-CeEEEeCC------chhHHHHHHHHHH-hhcCCCcEEecCHHHHHHHhhh-cCCCCCCHHHHH
Q 019448 171 SPDSIQLVAEHAAANN-KVFMMNLS------APFICEFFKDALE-KVLPYMDYIFGNETEARTFSKV-QGWETDDVEEIA 241 (341)
Q Consensus 171 ~~~~~~~~~~~a~~~~-~~v~~d~~------~~~~~~~~~~~~~-~~l~~~dvl~~n~~E~~~l~~~-~~~~~~d~~~~~ 241 (341)
+++.+..+.+..++++ .++++||- .+...+...+.++ +++|+++++.||..|++.|++. ...+.+|.++++
T Consensus 83 ~~eiie~va~~l~~~~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP~a~vvTPNl~EA~~L~g~~~i~~~~d~~~a~ 162 (263)
T COG0351 83 SAEIIEVVAEKLKKYGIGPVVLDPVMVAKSGDPLLDEEAVEALREELLPLATVVTPNLPEAEALSGLPKIKTEEDMKEAA 162 (263)
T ss_pred CHHHHHHHHHHHHhcCCCcEEECceEEEcCCCcccChHHHHHHHHHhhccCeEecCCHHHHHHHcCCCccCCHHHHHHHH
Confidence 6888999999999988 67999992 2233344445454 8999999999999999999994 556667788887
Q ss_pred HHHhcCCccccCCccEEEEEeCCCc----eEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHH
Q 019448 242 LKLSQWPKASEIRKRTAVITQGADP----VVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVR 317 (341)
Q Consensus 242 ~~l~~~~~~~~~~~~~vvvt~G~~G----~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~ 317 (341)
+.+ .+.|++.||||-|... -++|.++.++.+..+.+ +-.++.|+|++|.|++.+.|.+|.++++|++
T Consensus 163 ~~i------~~~g~~~VliKGGH~~~~~~D~l~~~~~~~~f~~~ri---~t~~tHGTGCTlSaAIaa~LA~G~~l~~AV~ 233 (263)
T COG0351 163 KLL------HELGAKAVLIKGGHLEGEAVDVLYDGGSFYTFEAPRI---PTKNTHGTGCTLSAAIAANLAKGLSLEEAVK 233 (263)
T ss_pred HHH------HHhCCCEEEEcCCCCCCCceeEEEcCCceEEEecccc---CCCCCCCccHHHHHHHHHHHHcCCCHHHHHH
Confidence 777 6789999999977633 35566666666665444 6678999999999999999999999999999
Q ss_pred HHHHHhhhhhh
Q 019448 318 AGCYTSHVIIQ 328 (341)
Q Consensus 318 ~a~~~Aa~~v~ 328 (341)
.|-..-..+++
T Consensus 234 ~Ak~fv~~AI~ 244 (263)
T COG0351 234 KAKEFVTRAIR 244 (263)
T ss_pred HHHHHHHHHHh
Confidence 99998888887
No 69
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.48 E-value=4.1e-13 Score=134.16 Aligned_cols=160 Identities=14% Similarity=0.180 Sum_probs=116.9
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHhC-CCeEEEeCCch------hHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhc
Q 019448 158 AKYFYIAGFFLTVSPDSIQLVAEHAAAN-NKVFMMNLSAP------FICEFFKDALEKVLPYMDYIFGNETEARTFSKVQ 230 (341)
Q Consensus 158 ~~~v~i~~~~~~~~~~~~~~~~~~a~~~-~~~v~~d~~~~------~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~ 230 (341)
.+.+-++- -.+.+.+..+.+.+++. +.++++||... .+.....+.++++++++|+++||..|++.|++..
T Consensus 311 ~~aiKiGm---L~s~e~v~~i~~~l~~~~~~~vVlDPV~~~~sG~~l~~~~~~~~l~~Llp~adlItPN~~Ea~~L~g~~ 387 (755)
T PRK09517 311 VDAVKLGM---LGSADTVDLVASWLGSHEHGPVVLDPVMVATSGDRLLDADATEALRRLAVHVDVVTPNIPELAVLCGEA 387 (755)
T ss_pred CCEEEECC---CCCHHHHHHHHHHHHhCCCCCEEEecccccCCCCCCCCHHHHHHHHHHhCcccCccCCHHHHHHHhCCC
Confidence 46666642 23577888888888875 46799998421 1222233446679999999999999999998742
Q ss_pred -CCCCCCHHHHHHHHhcCCccccCCccEEEEEeC------CCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHH
Q 019448 231 -GWETDDVEEIALKLSQWPKASEIRKRTAVITQG------ADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFL 303 (341)
Q Consensus 231 -~~~~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G------~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~ 303 (341)
..+.++..++++++ .+.+...||||.| ..+++++.++..++++.+.+ +.+|++|+||+|.|+++
T Consensus 388 ~~~~~~d~~~aa~~L------~~~~g~~VVVkgGh~~~~~~~~~l~~~~~~~~~~~~~~v---~~~~t~GaGDtfsaaia 458 (755)
T PRK09517 388 PAITMDEAIAQARGF------ARTHGTIVIVKGGHLTGDLADNAVVRPDGSVHQVENPRV---NTTNSHGTGCSLSAALA 458 (755)
T ss_pred CCCCHHHHHHHHHHH------HHhcCCEEEEcCCcCCCCccceEEEeCCCeEEEEeeccc---CCCCCcChHHHHHHHHH
Confidence 12234455667776 3332347999988 34666665555666665544 78999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHhhhhhhh
Q 019448 304 SQLVQEKPIEECVRAGCYTSHVIIQR 329 (341)
Q Consensus 304 ~~l~~g~~~~~a~~~a~~~Aa~~v~~ 329 (341)
++|++|+++++|++.|..+-...+.+
T Consensus 459 a~La~G~sl~eAv~~A~~~v~~~i~~ 484 (755)
T PRK09517 459 TLIAAGESVEKALEWATRWLNEALRH 484 (755)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998888865
No 70
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=99.48 E-value=1.4e-12 Score=113.09 Aligned_cols=167 Identities=15% Similarity=0.083 Sum_probs=114.8
Q ss_pred hhhhhccceEEEEecccc-ccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcC--CCcEEecCHHHHHHHh
Q 019448 151 NWALVEKAKYFYIAGFFL-TVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLP--YMDYIFGNETEARTFS 227 (341)
Q Consensus 151 ~~~~l~~~~~v~i~~~~~-~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~--~~dvl~~n~~E~~~l~ 227 (341)
..+.+++.|++++..-.+ +...+.+..+++.+++.+.++++||....+.....+...+++. ++|++.||..|+..|+
T Consensus 43 ~~~~l~~~d~vvi~~G~l~~~~~~~i~~~~~~~~~~~~pvVlDp~~~~~~~~~~~~~~~ll~~~~~~ilTPN~~Ea~~L~ 122 (242)
T cd01170 43 VEELAKIAGALVINIGTLTSEQIEAMLKAGKAANQLGKPVVLDPVGVGATSFRTEVAKELLAEGQPTVIRGNASEIAALA 122 (242)
T ss_pred HHHHHHHcCcEEEeCCCCChHHHHHHHHHHHHHHhcCCCEEEcccccCcchhHHHHHHHHHhcCCCeEEcCCHHHHHHHh
Confidence 346678899999953221 1123556666667888899999999643221111123445555 4999999999999999
Q ss_pred hhcCCC---------CCCHHHHHHHHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhh
Q 019448 228 KVQGWE---------TDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAF 298 (341)
Q Consensus 228 ~~~~~~---------~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf 298 (341)
+....+ .++..++++++. +.+...|++| |.... ++++++.++++..+. ...++.|+||++
T Consensus 123 g~~~~~~~~~~~~~~~~~~~~aa~~l~------~~~~~~Vllk-G~~d~-l~~~~~~~~~~~~~~---~~~~v~GtGdtL 191 (242)
T cd01170 123 GLTGLGKGVDSSSSDEEDALELAKALA------RKYGAVVVVT-GEVDY-ITDGERVVVVKNGHP---LLTKITGTGCLL 191 (242)
T ss_pred CCCCCcCcccCCCcchHHHHHHHHHHH------HHhCCEEEEE-CCCcE-EEECCEEEEEeCCCc---cccCCCchHHHH
Confidence 854221 235667777773 3334568888 66664 556777777764322 445668999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhhhh
Q 019448 299 VGGFLSQLVQEKPIEECVRAGCYTSHVIIQ 328 (341)
Q Consensus 299 ~ag~~~~l~~g~~~~~a~~~a~~~Aa~~v~ 328 (341)
.|++.+.|.+|.++.+|+..|...-+.++.
T Consensus 192 a~aiAa~LA~g~~~~~A~~~A~~~~~~a~~ 221 (242)
T cd01170 192 GAVIAAFLAVGDDPLEAAVSAVLVYGIAGE 221 (242)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999776666654
No 71
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=99.47 E-value=1.1e-12 Score=126.37 Aligned_cols=158 Identities=17% Similarity=0.150 Sum_probs=108.7
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHhCC-CeEEEeCCc------hhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhc
Q 019448 158 AKYFYIAGFFLTVSPDSIQLVAEHAAANN-KVFMMNLSA------PFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQ 230 (341)
Q Consensus 158 ~~~v~i~~~~~~~~~~~~~~~~~~a~~~~-~~v~~d~~~------~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~ 230 (341)
.+.+.++-. .+.+.+..+.+..++.. .++++||.- ..+.+...+.++++++++|+++||..|++.|++..
T Consensus 99 ~~aikiG~l---~s~~~i~~v~~~l~~~~~~~vVlDPv~~~~~G~~l~~~~~~~~~~~Ll~~advItPN~~Ea~~Ltg~~ 175 (530)
T PRK14713 99 VDAVKIGML---GDAEVIDAVRTWLAEHRPPVVVLDPVMVATSGDRLLEEDAEAALRELVPRADLITPNLPELAVLLGEP 175 (530)
T ss_pred CCEEEECCc---CCHHHHHHHHHHHHhCCCCCEEECCcccCCCCCCCCCHHHHHHHHHHhhhhheecCChHHHHHHhCCC
Confidence 566776422 24555555555555443 358889842 22233455667789999999999999999998743
Q ss_pred C-CCCCCHHHHHHHHhcCCccccCCccEEEEEeCCCc-----eEEE-ECCeeEEEeceecCCCcccCCCCCchhhHHHHH
Q 019448 231 G-WETDDVEEIALKLSQWPKASEIRKRTAVITQGADP-----VVVA-QDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFL 303 (341)
Q Consensus 231 ~-~~~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G-----~~~~-~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~ 303 (341)
. .+.++..++++++ .+.+...||||.|..+ ..++ .+++.++++.+.+ +.+|++|+||+|.|+|+
T Consensus 176 ~~~~~~d~~~aa~~L------~~~~g~~VvItgG~~~~~~~~d~~~~~~~~~~~~~~~~v---~~~~t~GaGD~fsaala 246 (530)
T PRK14713 176 PATTWEEALAQARRL------AAETGTTVLVKGGHLDGQRAPDALVGPDGAVTEVPGPRV---DTRNTHGTGCSLSSALA 246 (530)
T ss_pred CCCCHHHHHHHHHHH------HHhcCCEEEEeCCCCCCCcceEEEEcCCCeEEEEeeeee---CCCCCCcHHHHHHHHHH
Confidence 2 1234455666776 3333468999988632 3344 3444666665544 77899999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHhhhhh
Q 019448 304 SQLVQEKPIEECVRAGCYTSHVII 327 (341)
Q Consensus 304 ~~l~~g~~~~~a~~~a~~~Aa~~v 327 (341)
++|++|+++++|+++|+..-...+
T Consensus 247 a~La~G~~l~eAv~~A~~~v~~~i 270 (530)
T PRK14713 247 TRLGRGGDWAAALRWATAWLHGAI 270 (530)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999998444444
No 72
>PLN02978 pyridoxal kinase
Probab=99.46 E-value=1.6e-12 Score=116.84 Aligned_cols=162 Identities=13% Similarity=0.102 Sum_probs=108.1
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHh--CCCeEEEeCCch----hH-HHHHHHHHH-hhcCCCcEEecCHHHHHHHhhh
Q 019448 158 AKYFYIAGFFLTVSPDSIQLVAEHAAA--NNKVFMMNLSAP----FI-CEFFKDALE-KVLPYMDYIFGNETEARTFSKV 229 (341)
Q Consensus 158 ~~~v~i~~~~~~~~~~~~~~~~~~a~~--~~~~v~~d~~~~----~~-~~~~~~~~~-~~l~~~dvl~~n~~E~~~l~~~ 229 (341)
.+.+.++-.......+.+.++++.+++ .++++++||... .+ .+...+.++ .+++++|+++||..|++.|++.
T Consensus 87 ~~ai~~G~l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~~~~~~~~~~~ll~~adiitPN~~Ea~~L~g~ 166 (308)
T PLN02978 87 YTHLLTGYIGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVPPELVPVYREKVVPLATMLTPNQFEAEQLTGI 166 (308)
T ss_pred cCEEEecccCCHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCccCChhHHHHHHHHHHhhCCeeccCHHHHHHHhCC
Confidence 566665432222234667777777776 346788898521 11 122334454 5999999999999999999875
Q ss_pred cCCCCCCHHHHHHHHhcCCccccCCccEEEEEeCC-CceEEEEC---------CeeEEEeceecCCCcccCCCCCchhhH
Q 019448 230 QGWETDDVEEIALKLSQWPKASEIRKRTAVITQGA-DPVVVAQD---------GKLKKFPVIVLPKDKLVDTNGAGDAFV 299 (341)
Q Consensus 230 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~-~G~~~~~~---------~~~~~~~~~~~~~~~~vd~tGAGDaf~ 299 (341)
...+.++..++++++ .+.|++.||||.+. +|..+... ++.+++..+.+ +.. ++|+||+|+
T Consensus 167 ~~~~~~~~~~a~~~l------~~~g~~~VVITs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~-~~GtGD~fs 236 (308)
T PLN02978 167 RIVTEEDAREACAIL------HAAGPSKVVITSIDIDGKLLLVGSHRKEKGARPEQFKIVIPKI---PAY-FTGTGDLMA 236 (308)
T ss_pred CCCCHHHHHHHHHHH------HHhCCCEEEEEEecCCCCEEEEEecccccCCCCceEEEEccCC---CCC-CCCchHHHH
Confidence 322233455777777 56788999998744 34332211 24455554433 333 589999999
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHhhhhhhh
Q 019448 300 GGFLSQLVQE-KPIEECVRAGCYTSHVIIQR 329 (341)
Q Consensus 300 ag~~~~l~~g-~~~~~a~~~a~~~Aa~~v~~ 329 (341)
|++++.+.+| .++++|++.|...-...++.
T Consensus 237 A~laa~l~~g~~~l~~A~~~A~~~v~~~i~~ 267 (308)
T PLN02978 237 ALLLGWSHKYPDNLDKAAELAVSSLQAVLRR 267 (308)
T ss_pred HHHHHHHhcCCcCHHHHHHHHHHHHHHHHHH
Confidence 9888888887 79999999999887777664
No 73
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=99.40 E-value=2e-11 Score=108.19 Aligned_cols=161 Identities=16% Similarity=0.096 Sum_probs=110.9
Q ss_pred hhhccceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCC
Q 019448 153 ALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGW 232 (341)
Q Consensus 153 ~~l~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~ 232 (341)
..+...|++++++.. .+.+.+..+++.+++.+.++++|+....+... ......+.++++||..|++.|++....
T Consensus 88 ~~~~~~davvig~Gl--~~~~~~~~l~~~~~~~~~pvVlDa~g~~l~~~----~~~~~~~~~vItPN~~El~~L~g~~~~ 161 (272)
T TIGR00196 88 ELLERYDVVVIGPGL--GQDPSFKKAVEEVLELDKPVVLDADALNLLTY----DKPKREGEVILTPHPGEFKRLLGLVNE 161 (272)
T ss_pred hhhccCCEEEEcCCC--CCCHHHHHHHHHHHhcCCCEEEEhHHHHHHhh----cccccCCCEEECCCHHHHHHHhCCchh
Confidence 345788999997632 12334778888888889999999975432111 101134689999999999999985433
Q ss_pred CCCCHHHHHHHHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCH
Q 019448 233 ETDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPI 312 (341)
Q Consensus 233 ~~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~ 312 (341)
+.++..++++++. +. .+.+|++.|..+.++..++..+..+ .. ....+++|+||++.|.+.+.+.+|.++
T Consensus 162 ~~~~~~~aa~~l~------~~-~~~vVv~kG~~~~i~~~~~~~~~~~-~~---~~~~~~~GaGD~lag~iaa~la~g~~~ 230 (272)
T TIGR00196 162 IQGDRLEAAQDIA------QK-LQAVVVLKGAADVIAAPDGDLWINK-TG---NAALAKGGTGDVLAGLIGGLLAQNLDP 230 (272)
T ss_pred hhhhHHHHHHHHH------HH-hCCEEEEcCCCCEEEcCCCeEEEEC-CC---CCccCCCCchHHHHHHHHHHHhCCCCH
Confidence 4456677777773 32 3458888899998665444555433 22 366789999999666565666689999
Q ss_pred HHHHHHH---HHHhhhhhhhc
Q 019448 313 EECVRAG---CYTSHVIIQRS 330 (341)
Q Consensus 313 ~~a~~~a---~~~Aa~~v~~~ 330 (341)
.+|+..| ...|+..+.+.
T Consensus 231 ~~A~~~a~~~~~~a~~~~~~~ 251 (272)
T TIGR00196 231 FDAACNAAFAHGLAGDLALKN 251 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 9999777 77777666443
No 74
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=99.32 E-value=2.9e-11 Score=104.04 Aligned_cols=165 Identities=14% Similarity=0.114 Sum_probs=117.5
Q ss_pred hhhccceEEEEeccccccCHHHHHHHHHHHHhCCCe--EEEeCCc-----hhHHHHHHHHHH-hhcCCCcEEecCHHHHH
Q 019448 153 ALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKV--FMMNLSA-----PFICEFFKDALE-KVLPYMDYIFGNETEAR 224 (341)
Q Consensus 153 ~~l~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~--v~~d~~~-----~~~~~~~~~~~~-~~l~~~dvl~~n~~E~~ 224 (341)
+.+.++|.++.+-.........+..+++..|+.+.. +.+||-- -+......+..+ ++++.+|++.||.-|++
T Consensus 69 ~~~~~~davltGYlgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~lip~AdiiTPN~fELe 148 (281)
T COG2240 69 DKLGECDAVLTGYLGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDELLPLADIITPNIFELE 148 (281)
T ss_pred ccccccCEEEEccCCCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHhhcchhhEeCCCHHHHH
Confidence 356788988854322222345677777777777554 7777721 111122233333 79999999999999999
Q ss_pred HHhhhcCCCCCCHHHHHHHHhcCCccccCCccEEEEEeCC-----CceEEEECCe---eEEEeceecCCCcccCCCCCch
Q 019448 225 TFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQGA-----DPVVVAQDGK---LKKFPVIVLPKDKLVDTNGAGD 296 (341)
Q Consensus 225 ~l~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~-----~G~~~~~~~~---~~~~~~~~~~~~~~vd~tGAGD 296 (341)
.|++....+.+|..++++.| .+.|++.+|||.=. .|..++.... .+++. +. -..+.+|.||
T Consensus 149 ~Ltg~~~~~~~da~~aa~~L------~~~gp~~vlVTS~~~~~~~~~~~~~~~~~~~~~~h~~-~~----v~~~~~GtGD 217 (281)
T COG2240 149 ILTGKPLNTLDDAVKAARKL------GADGPKIVLVTSLSRAGMSTGNFEMLGKSAELAWHIS-PL----VPFIPNGTGD 217 (281)
T ss_pred HHhCCCCCCHHHHHHHHHHH------hhcCCCEEEEecccccCCCCceEEEeccchhhhhhhh-hc----CCCCCCCchH
Confidence 99998776777888888888 66789999999633 3455554332 23332 22 2345999999
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHhhhhhh
Q 019448 297 AFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQ 328 (341)
Q Consensus 297 af~ag~~~~l~~g~~~~~a~~~a~~~Aa~~v~ 328 (341)
.|+|.|++++++|.++++|+..+..+-...++
T Consensus 218 L~sallla~lL~g~~~~~al~~~~~~V~evl~ 249 (281)
T COG2240 218 LFSALLLARLLEGLSLTQALERATAAVYEVLQ 249 (281)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988877776
No 75
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=99.16 E-value=1.1e-09 Score=97.62 Aligned_cols=160 Identities=11% Similarity=0.063 Sum_probs=105.4
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHhC------CCeEEEeCCc------hhHH-HHHHHHH-HhhcCCCcEEecCHHHH
Q 019448 158 AKYFYIAGFFLTVSPDSIQLVAEHAAAN------NKVFMMNLSA------PFIC-EFFKDAL-EKVLPYMDYIFGNETEA 223 (341)
Q Consensus 158 ~~~v~i~~~~~~~~~~~~~~~~~~a~~~------~~~v~~d~~~------~~~~-~~~~~~~-~~~l~~~dvl~~n~~E~ 223 (341)
.+++=++- -.+.+.+..+.+..++. ..++++||-- .... ....+.+ +.++++++++.||..|+
T Consensus 74 i~aIKiGm---L~s~e~i~~v~~~l~~~~~~~~~~~~vVlDPVl~sssG~~L~~~~~~~~~~~~~Llp~a~viTPN~~Ea 150 (321)
T PTZ00493 74 IDVVKLGV---LYSKKIISLVHNYITNMNKKRGKKLLVVFDPVFVSSSGCLLVENLEYIKFALDLICPISCIITPNFYEC 150 (321)
T ss_pred CCEEEECC---cCCHHHHHHHHHHHHHhcccccCCCeEEECCceEECCCCccCCcHHHHHHHHHHhhccCEEECCCHHHH
Confidence 45566542 22566666666666554 2248899931 1111 1122222 46999999999999999
Q ss_pred HHHhhh----cCCCCCCHHHHHHHHhcCCcccc-CCccEEEEEeCCCc----------e--EEEEC--------------
Q 019448 224 RTFSKV----QGWETDDVEEIALKLSQWPKASE-IRKRTAVITQGADP----------V--VVAQD-------------- 272 (341)
Q Consensus 224 ~~l~~~----~~~~~~d~~~~~~~l~~~~~~~~-~~~~~vvvt~G~~G----------~--~~~~~-------------- 272 (341)
+.|++. ...+.++..++++++ .+ .|++.|+||-|... + +++..
T Consensus 151 ~~L~g~~~~~~~~~~~~~~~aA~~l------~~~~G~~~VliKGGh~~~~~~~~~~~~~~D~l~~~~~~~~~~~~~~~~~ 224 (321)
T PTZ00493 151 KVILEALDCQMDLSKANMTELCKLV------TEKLNINACLFKSCNVGENSAEENEVYAVDHLCIRNVGSYPTGEKQQID 224 (321)
T ss_pred HHHhCCCcccCCCCHHHHHHHHHHH------HHhcCCCEEEECcCCCcccccccccccceeEEecCCccccccccccccc
Confidence 999871 112344667888887 44 58999999976521 1 23321
Q ss_pred -C------eeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCHHHHHHHHHHHhhhhhhh
Q 019448 273 -G------KLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGCYTSHVIIQR 329 (341)
Q Consensus 273 -~------~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~~~a~~~a~~~Aa~~v~~ 329 (341)
+ +.+++... .....++.|.||+|++++++.|++|+++++|++.|...-..++..
T Consensus 225 ~~~~~~~~~~~~~~~~---ri~~~~~hGTGc~fASAIAa~LA~G~~l~~Av~~A~~fv~~aI~~ 285 (321)
T PTZ00493 225 AGGVTYLYDVYKLRSK---RKPGKDIHGTGCTLSTAIACYLAKKHNILQSCIESKKYIYNCIRY 285 (321)
T ss_pred cccccccceEEEEEec---ccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 1 12333322 224456789999999999999999999999999999888777764
No 76
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=99.06 E-value=7.3e-09 Score=91.10 Aligned_cols=162 Identities=14% Similarity=0.094 Sum_probs=104.9
Q ss_pred hhhccceEEEEeccccccCHH---HHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcC--CCcEEecCHHHHHHHh
Q 019448 153 ALVEKAKYFYIAGFFLTVSPD---SIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLP--YMDYIFGNETEARTFS 227 (341)
Q Consensus 153 ~~l~~~~~v~i~~~~~~~~~~---~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~--~~dvl~~n~~E~~~l~ 227 (341)
+.+..+|.+++..-. ...+ .+..+++.+++.++|+++||..........+..+++++ +.+++.||..|+..|+
T Consensus 50 ~~~~~~~alvi~~G~--l~~~~~~~i~~~~~~a~~~~~pvVlDpv~~~~~~~~~~~~~~ll~~~~~~vItPN~~E~~~L~ 127 (263)
T PRK09355 50 EMAKIAGALVINIGT--LTEERIEAMLAAGKIANEAGKPVVLDPVGVGATSYRTEFALELLAEVKPAVIRGNASEIAALA 127 (263)
T ss_pred HHHHhcCceEEeCCC--CCHHHHHHHHHHHHHHHhcCCCEEECCcccCcchhhHHHHHHHHHhcCCcEecCCHHHHHHHh
Confidence 456778888885322 2333 35555566788899999999653222111222233443 6899999999999998
Q ss_pred hhcC----CC----CCCHHHHHHHHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhH
Q 019448 228 KVQG----WE----TDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFV 299 (341)
Q Consensus 228 ~~~~----~~----~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ 299 (341)
+... .+ .++..+.++.+. ++....+++| |.. -++++++..+.++.-. ....+.+|+||++.
T Consensus 128 g~~~~~~~vd~~~~~~~~~~~a~~la------~~~~~~Vvvk-G~~-d~I~~~~~~~~~~~g~---~~~~~v~GtGc~L~ 196 (263)
T PRK09355 128 GEAAETKGVDSTDGSADAVEIAKAAA------KKYGTVVVVT-GEV-DYITDGERVVSVHNGH---PLMTKVTGTGCLLS 196 (263)
T ss_pred CCCcccCCcCCCCCHHHHHHHHHHHH------HHhCCEEEEE-CCC-cEEEeCCEEEEEeCCC---cccCCcccccHHHH
Confidence 7531 11 124556677773 3334568888 443 2445555555555211 14455699999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhhh
Q 019448 300 GGFLSQLVQEKPIEECVRAGCYTSHVII 327 (341)
Q Consensus 300 ag~~~~l~~g~~~~~a~~~a~~~Aa~~v 327 (341)
|.+.+.+..|.++.+|+..|...-+.+-
T Consensus 197 ~~iaa~lA~g~~~~~A~~~A~~~~~~a~ 224 (263)
T PRK09355 197 AVVAAFAAVEKDYLEAAAAACAVYGIAG 224 (263)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999988886555443
No 77
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=98.94 E-value=2.8e-08 Score=86.67 Aligned_cols=163 Identities=15% Similarity=0.072 Sum_probs=104.1
Q ss_pred hhhccceEEEEeccccccC--HHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcC--CCcEEecCHHHHHHHhh
Q 019448 153 ALVEKAKYFYIAGFFLTVS--PDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLP--YMDYIFGNETEARTFSK 228 (341)
Q Consensus 153 ~~l~~~~~v~i~~~~~~~~--~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~--~~dvl~~n~~E~~~l~~ 228 (341)
+.+..++.+++..-.+ .+ .+.+..+++.++++++|+++||..........+...++++ +.+++.+|..|+..|++
T Consensus 45 ~~~~~~~al~ik~G~l-~~~~~~~i~~~~~~~~~~~~pvVlDPV~~~~s~~r~~~~~~Ll~~~~~~vITpN~~E~~~L~g 123 (249)
T TIGR00694 45 ELAKIAGALVINIGTL-DKESIEAMIAAGKSANELGVPVVLDPVGVGATKFRTETALELLSEGRFAAIRGNAGEIASLAG 123 (249)
T ss_pred HHHHHcCceEEeCCCC-CHHHHHHHHHHHHHHHhcCCCEEEcccccccchhHHHHHHHHHhhcCCceeCCCHHHHHHHhC
Confidence 4567788888865322 12 3445566677778889999999653322222232345665 47999999999999987
Q ss_pred hc----CCC----CCCHHHHHHHHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHH
Q 019448 229 VQ----GWE----TDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVG 300 (341)
Q Consensus 229 ~~----~~~----~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~a 300 (341)
.. +.+ .++..++++.+. ++....|++| |..- +++++++.+.+..-.. .....+|.||++.+
T Consensus 124 ~~~~~~gvd~~~~~~d~~~~a~~la------~~~~~~Vllk-G~~D-~i~~~~~~~~~~~g~~---~~~~~~GtGc~Lss 192 (249)
T TIGR00694 124 ETGLMKGVDSGEGAADAIRAAQQAA------QKYGTVVVIT-GEVD-YVSDGTSVYTIHNGTE---LLGKITGSGCLLGS 192 (249)
T ss_pred CCCCCCCcCCccchHHHHHHHHHHH------HHhCCEEEEE-CCCc-EEEeCCEEEEECCCCh---HHhCCccchHHHHH
Confidence 43 111 234556677763 3322367776 5433 4555665555432111 11224799999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhhh
Q 019448 301 GFLSQLVQEKPIEECVRAGCYTSHVII 327 (341)
Q Consensus 301 g~~~~l~~g~~~~~a~~~a~~~Aa~~v 327 (341)
++.+.+.+|.++.+|+..|...-..+.
T Consensus 193 aIaa~LA~g~~~~~A~~~A~~~~~~a~ 219 (249)
T TIGR00694 193 VVAAFCAVEEDPLDAAISACLLYKIAG 219 (249)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999998875444443
No 78
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=98.70 E-value=2.2e-07 Score=78.67 Aligned_cols=162 Identities=16% Similarity=0.175 Sum_probs=105.1
Q ss_pred hccceEEEEecccccc-CHHHHHHHHHHHHhCCCe--EEEeCC-----chhHHHHHHHHHHhhcC-CCcEEecCHHHHHH
Q 019448 155 VEKAKYFYIAGFFLTV-SPDSIQLVAEHAAANNKV--FMMNLS-----APFICEFFKDALEKVLP-YMDYIFGNETEART 225 (341)
Q Consensus 155 l~~~~~v~i~~~~~~~-~~~~~~~~~~~a~~~~~~--v~~d~~-----~~~~~~~~~~~~~~~l~-~~dvl~~n~~E~~~ 225 (341)
+..++.+. +|+..+. ....+..+.+..|+.+.. ..+||- ..+..+.-....++++. .+|++.||.=|++.
T Consensus 79 ~~~Y~~vL-TGY~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~eelipvYr~~i~~ladiiTPNqFE~Ei 157 (308)
T KOG2599|consen 79 LNKYDAVL-TGYLPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVPEELIPVYRDLIIPLADIITPNQFEAEI 157 (308)
T ss_pred ccccceee-eeccCChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEeccHHHHHHHHHhhcchhhhcCCcchhhhh
Confidence 44677766 5555443 346677777878876644 666772 11222222333445554 59999999999999
Q ss_pred HhhhcCCCCCCHHHHHHHHhcCCccccCCccEEEEEeCCC----ce-EEE---E-CCeeEEEeceecCCCcccCCCCCch
Q 019448 226 FSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQGAD----PV-VVA---Q-DGKLKKFPVIVLPKDKLVDTNGAGD 296 (341)
Q Consensus 226 l~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~----G~-~~~---~-~~~~~~~~~~~~~~~~~vd~tGAGD 296 (341)
|++....+.+|.+++++.+ +.++++.||||...- |. +++ . +.+.+.+..+.+ . ---||.||
T Consensus 158 Ltg~~I~t~eda~~a~~~l------hq~~v~~vVITS~~~~~~~g~~l~c~gs~~~~~~f~~~ipki---~-~~FtGTGD 227 (308)
T KOG2599|consen 158 LTGMEIRTEEDAKRAVEKL------HQKGVKTVVITSFDLGEFTGETLRCIGSSCGSERFRYLIPKI---D-GVFTGTGD 227 (308)
T ss_pred hcCCeeccHHHHHHHHHHH------HHhCCCEEEEEeeeeCCCCCcEEEEEEeccCCceEEEEeccc---c-eEEecccH
Confidence 9998888888999999999 888999999997543 41 222 1 223333332211 2 23589999
Q ss_pred hhHHHHHHHHhcC---CCHHHHHHHHHHHhhhhh
Q 019448 297 AFVGGFLSQLVQE---KPIEECVRAGCYTSHVII 327 (341)
Q Consensus 297 af~ag~~~~l~~g---~~~~~a~~~a~~~Aa~~v 327 (341)
.|.|-+++.+..- .++..|++.+..+--..+
T Consensus 228 LfsaLLla~~~~~~~~~~l~~a~e~~ls~~~~vi 261 (308)
T KOG2599|consen 228 LFSALLLAWLHESPDNDDLSKAVEQVLSSVQAVI 261 (308)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHH
Confidence 9999888877664 567777766655443333
No 79
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=98.61 E-value=1.8e-05 Score=73.44 Aligned_cols=218 Identities=13% Similarity=-0.014 Sum_probs=116.8
Q ss_pred eEEEEcCceeeeEeecChhHHHHh-----------------------------------CCCCCceEecccccccHHHHH
Q 019448 6 ILLGMGNPLLDISSVVDDDFLNKY-----------------------------------DIKLNNAILAEEKHLPLYDEM 50 (341)
Q Consensus 6 ~v~~iG~~~lD~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~ 50 (341)
.|+|-=++++|-+.++.++.++++ .++..+..+.+.+-+......
T Consensus 2 ~i~~aYN~NiDai~~l~~~~i~~li~~~~~~~v~~~~e~~p~~I~s~~Dl~~~~~~~mk~G~aAE~~v~n~~lf~~l~~~ 81 (453)
T PRK14039 2 NILCGYNVNIDSVYRITGAEIEELLRTFEKAEILEKIENPPGKILSLSDFVAGLIHCMKNGCGAEWLVFEQSVFEFLKNR 81 (453)
T ss_pred ceeeecccceeeeEeccHHHHHHHHHHcChHhHhHHhhcCCcccCCHHHHHHHHHHHHhCCCceEeeecCHHHHHHHHHh
Confidence 356777888999888886555543 122244455544322222221
Q ss_pred hccCCceEecCchHHHHHHHHHHHhcCCCcEEE-EeeeecCchhHHHHHHHHhcCcceeeee-------------cCCCC
Q 019448 51 ASKYNVEYIAGGATQNSIRVAQWMLQIPGATSY-IGCIGKDKFGEEMKKNSKLAGVNVHYYE-------------DESAS 116 (341)
Q Consensus 51 ~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~-i~~vG~D~~g~~i~~~l~~~gi~~~~~~-------------~~~~~ 116 (341)
.......+.||.|..+|..++. +|.++.+ .++ ..++..++.|.+.+|-..... ....+
T Consensus 82 -~~~~~~~rmGGnAgimAn~la~---lg~~~Vi~~~~----~lsk~q~~lf~~~~i~~p~~~~~~~l~~~~~~~a~~~~~ 153 (453)
T PRK14039 82 -FFDNSEIRMGGNAGIMANVLSE---LGASRVVPNVA----VPSKTQLSLFSKKAVYFPGMPLQASETDGEKVGASSSDQ 153 (453)
T ss_pred -hccCceEEeCChHHHHHHHHHh---cCCceEEEcCC----CCCHHHHHhcCCCCEEeccccccccccCccccccccCCC
Confidence 1245678999999998888875 4577544 332 233455666643333322110 01111
Q ss_pred ceeEEEEEe-CCccce-----eecccccccCCcc-----cCCC-cchhhhhc----cceEEEEeccccccC--------H
Q 019448 117 TGTCAVCVV-GGERSL-----VANLSAANCYKSE-----HLKK-PENWALVE----KAKYFYIAGFFLTVS--------P 172 (341)
Q Consensus 117 t~~~~~~~~-~g~~~~-----~~~~~~~~~~~~~-----~~~~-~~~~~~l~----~~~~v~i~~~~~~~~--------~ 172 (341)
...-+++-. .|++.. +..+.++..+-.. .+.. +++...+. .+|.++++|+++... .
T Consensus 154 d~IH~IfEy~~G~~~~l~~~~~~aPRaNRfI~s~D~~N~~l~i~e~f~~~l~e~~~~~D~avlSG~q~l~d~y~dg~~~~ 233 (453)
T PRK14039 154 EPIHFVFDFREGETFSLYGTRIRAPRENRFIATFDHLNFRLFINPAFEQYALEHAGEMDGALISGFHLLLETYPDGSTYR 233 (453)
T ss_pred CCceEEEEeCCCCEEecCCccEecCCCCeEEEecCCCCccceecHHHHHHHHhhccCCCEEEEechhhhhhhcCCcccHH
Confidence 222222222 344331 1222211111100 1111 22223333 789999999984311 2
Q ss_pred HHHHHHH---HHHH--hCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcC
Q 019448 173 DSIQLVA---EHAA--ANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQG 231 (341)
Q Consensus 173 ~~~~~~~---~~a~--~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~ 231 (341)
+.+.+.. +..+ ..++++-+.+.+..-.......+..+++++|.+=+|++|+..+....+
T Consensus 234 e~l~~~~~~i~~l~~~~~~i~iH~E~As~~~~~i~~~v~~~Ilp~VDSlGmNEqELa~l~~~~g 297 (453)
T PRK14039 234 EKLEDSLAQLKWWKSKNEKLRIHAELGHFASKEIANSVFLILAGIVDSIGMNEDELAMLANLHG 297 (453)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEecCcccHHHHHHHHHHhhcccccccCCHHHHHHHHHHcc
Confidence 3333333 3332 234689999987654445556677899999999999999999887644
No 80
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=98.54 E-value=3.2e-05 Score=72.10 Aligned_cols=76 Identities=14% Similarity=0.091 Sum_probs=51.8
Q ss_pred ccceEEEEeccccccC-----------HHHHHHHHHHHH--hCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHH
Q 019448 156 EKAKYFYIAGFFLTVS-----------PDSIQLVAEHAA--ANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETE 222 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~-----------~~~~~~~~~~a~--~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E 222 (341)
..+|+++++|++.... .+.+.+.++..+ ..++++-+.+.+..-.......+..+++++|.+-+|++|
T Consensus 221 ~~~D~avlSG~q~i~~~y~dg~~~~~~l~r~~~~i~~L~~~~~~i~iH~E~As~~~~~ir~~i~~~ilp~vDSlGmNE~E 300 (463)
T PRK03979 221 KMVDGAILSGYQGIKEEYSDGKTAEYYLKRAKEDIKLLKKKNKDIKIHVEFASIQNREIRKKIITYILPHVDSVGMDETE 300 (463)
T ss_pred cCCCEEEEechhhhhccccccccHHHHHHHHHHHHHHHhhCCCCceEEEEeccccCHHHHHHHHHhhccccccccCCHHH
Confidence 3499999999984221 122333444443 345788888876543344555566889999999999999
Q ss_pred HHHHhhhcC
Q 019448 223 ARTFSKVQG 231 (341)
Q Consensus 223 ~~~l~~~~~ 231 (341)
+..+....+
T Consensus 301 La~l~~~lg 309 (463)
T PRK03979 301 IANILNVLG 309 (463)
T ss_pred HHHHHHHhc
Confidence 998776544
No 81
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=98.32 E-value=8.8e-06 Score=73.50 Aligned_cols=149 Identities=17% Similarity=0.232 Sum_probs=102.8
Q ss_pred CHHHHHHHHHHHHhCC-CeEEEeCC-----chhHH--HHHHHHHHhhcCCCcEEecCHHHHHHHhhhc------CCCCCC
Q 019448 171 SPDSIQLVAEHAAANN-KVFMMNLS-----APFIC--EFFKDALEKVLPYMDYIFGNETEARTFSKVQ------GWETDD 236 (341)
Q Consensus 171 ~~~~~~~~~~~a~~~~-~~v~~d~~-----~~~~~--~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~------~~~~~d 236 (341)
+++.+.-+.+.+...+ .++++||- +.... +.-.-..++++|.+|++.+|.-|+-.|.+.. ..+..|
T Consensus 103 ~~~I~~vi~q~l~~~~~~klVvDPVivatsG~~l~~~divsl~~e~l~P~adiltPNI~Ea~~Ll~~~~~~~~~i~~v~d 182 (523)
T KOG2598|consen 103 SPEIVKVIEQSLQKFNIPKLVVDPVIVATSGSSLAGKDIVSLFIEELLPFADILTPNIPEAFILLKKEKREISKIQSVFD 182 (523)
T ss_pred chHHHHHHHHHHHhhcCcceeecceEEeccCCcccCCccHHHHHHHhhhhHHHhCCChHHHHHHHhhcccCCcccccHHH
Confidence 3444444444444444 45888872 11111 1233335789999999999999999998742 222345
Q ss_pred HHHHHHHHhcCCccccCCccEEEEEeCCC-------------c---e-EEEECCeeEEEeceecCCCcccCCCCCchhhH
Q 019448 237 VEEIALKLSQWPKASEIRKRTAVITQGAD-------------P---V-VVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFV 299 (341)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~~vvvt~G~~-------------G---~-~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ 299 (341)
.++.+..+ .+.|++.|+++-|.- . . .+|.+.+++.++.+-+ .-..+.|.|-+.+
T Consensus 183 i~~~~~~i------hk~gpk~VlvkGghiP~~~~~~~s~d~~~~~~~DvlydG~~F~~f~~~~~---~t~~tHGtgCtLa 253 (523)
T KOG2598|consen 183 IAKDAAKI------HKLGPKNVLVKGGHIPFNKNMMTSKDDSDKYTVDVLYDGKEFYIFKSPYL---ATKHTHGTGCTLA 253 (523)
T ss_pred HHHHHHHH------HhcCcceEEEeCCCcCccccccccCcccCCceEEEEEecceEEEeccccc---ccccccCccchHH
Confidence 66677777 788999999996631 1 1 3455666777665433 6678899999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhhhh
Q 019448 300 GGFLSQLVQEKPIEECVRAGCYTSHVIIQ 328 (341)
Q Consensus 300 ag~~~~l~~g~~~~~a~~~a~~~Aa~~v~ 328 (341)
+++.+.|++|.++.+|++.|...---+++
T Consensus 254 SAIASnLA~g~sl~qAv~~ai~yvq~Ai~ 282 (523)
T KOG2598|consen 254 SAIASNLARGYSLLQAVQGAIEYVQNAIA 282 (523)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876555554
No 82
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=98.29 E-value=0.00025 Score=65.90 Aligned_cols=76 Identities=14% Similarity=0.113 Sum_probs=53.8
Q ss_pred ccceEEEEeccccccC-----------HHHHHHHHHHHHh-CCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHH
Q 019448 156 EKAKYFYIAGFFLTVS-----------PDSIQLVAEHAAA-NNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEA 223 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~-----------~~~~~~~~~~a~~-~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~ 223 (341)
+..|.++++|++.... .+...+.++..+. .++++-+...+..-.......+..+++++|.+-+|++|+
T Consensus 208 ~~~d~~vlSG~q~m~~~y~dg~~~~~~~er~~~~i~~L~~~~~i~iH~E~As~~~~~l~~~i~~~ilp~vDSlGMNE~EL 287 (446)
T TIGR02045 208 EPVDGAILSGYQGIKEEYSDGKTAKYYLERAKEDIELLKKNKDLKIHVEFASIQNREIRKKVVTNIFPHVDSVGMDEAEI 287 (446)
T ss_pred hcccEEEEEchhhhhhhccCCccHhHHHHHHHHHHHHHhhCCCCeEEEEecccccHHHHHHHHHhhccccccccCCHHHH
Confidence 5689999999984211 1334455555533 668899998775544445555678899999999999999
Q ss_pred HHHhhhcC
Q 019448 224 RTFSKVQG 231 (341)
Q Consensus 224 ~~l~~~~~ 231 (341)
..+....+
T Consensus 288 a~ll~~lg 295 (446)
T TIGR02045 288 ANVLSVLG 295 (446)
T ss_pred HHHHHHhc
Confidence 99876543
No 83
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=98.20 E-value=2.6e-05 Score=73.49 Aligned_cols=77 Identities=21% Similarity=0.186 Sum_probs=48.2
Q ss_pred hccceEEEEecccccc----CH-------HHHHHHHHHHH-hCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHH
Q 019448 155 VEKAKYFYIAGFFLTV----SP-------DSIQLVAEHAA-ANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETE 222 (341)
Q Consensus 155 l~~~~~v~i~~~~~~~----~~-------~~~~~~~~~a~-~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E 222 (341)
...+|+++++|+++.. +. +.+.+.++..+ ..++++-+.+.+..-...-...+..+++++|.+=+|++|
T Consensus 207 ~~~~d~~vlSGlq~l~~~~~d~~~~~~~l~~~~~~i~~l~~~~~~~iH~E~As~~d~~l~~~i~~~ilp~vDSlGmNEqE 286 (444)
T PF04587_consen 207 AFKPDLAVLSGLQMLDEFYFDGETYEERLKRLKEQIKLLKSNPDIPIHLELASFADEELRKEILEKILPHVDSLGMNEQE 286 (444)
T ss_dssp HTT-SEEEEE-GGG--TB-TTSTCHHHHHHHHHHHHHHHH-HTT-EEEEE----SSHHHHHHHHHHHGGGSSEEEEEHHH
T ss_pred ccCCCEEEEeccccchhhccchhHHHHHHHHHHHHHHhccCCCCCceEEEeccccCHHHHHHHHHHhhccccccccCHHH
Confidence 3459999999998532 11 22333334455 577899999987554444556667899999999999999
Q ss_pred HHHHhhhcC
Q 019448 223 ARTFSKVQG 231 (341)
Q Consensus 223 ~~~l~~~~~ 231 (341)
+..+....+
T Consensus 287 L~~l~~~lg 295 (444)
T PF04587_consen 287 LANLLSVLG 295 (444)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 998866543
No 84
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=97.79 E-value=0.006 Score=56.96 Aligned_cols=79 Identities=14% Similarity=0.081 Sum_probs=52.3
Q ss_pred hhhccceEEEEeccccccC---HHHHH---HHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHH
Q 019448 153 ALVEKAKYFYIAGFFLTVS---PDSIQ---LVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTF 226 (341)
Q Consensus 153 ~~l~~~~~v~i~~~~~~~~---~~~~~---~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l 226 (341)
+....+|+++++|++.... .+.+. ..++..++.++++-+++.+.. ....++.+.++++++|-+-+|++|+..+
T Consensus 220 ei~~~~Dl~vlSG~q~l~~~~~~~~l~~~~~~l~~l~~~~i~iH~EfAs~~-d~~~r~~i~~ilp~vDSlGmNE~ELa~l 298 (453)
T PRK14038 220 EIAKKAELAIISGLQALTEENYREPFETVREHLKVLNERGIPAHLEFAFTP-DETVREEILGLLGKFYSVGLNEVELASI 298 (453)
T ss_pred hhccCCCEEEEEchhhhccccHHHHHHHHHHHHHhcCcCCceEEEEeeccc-hHHHHHHHHhhCccccccccCHHHHHHH
Confidence 3446799999999984221 22333 333333445688888887542 2223444557899999999999999988
Q ss_pred hhhcCC
Q 019448 227 SKVQGW 232 (341)
Q Consensus 227 ~~~~~~ 232 (341)
....+.
T Consensus 299 l~~lg~ 304 (453)
T PRK14038 299 MEVMGE 304 (453)
T ss_pred HHHhcc
Confidence 775443
No 85
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=97.76 E-value=0.0017 Score=55.95 Aligned_cols=159 Identities=18% Similarity=0.125 Sum_probs=95.0
Q ss_pred hhhhccceEEEEecccccc-CHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhc--CCCcEEecCHHHHHHHhh
Q 019448 152 WALVEKAKYFYIAGFFLTV-SPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVL--PYMDYIFGNETEARTFSK 228 (341)
Q Consensus 152 ~~~l~~~~~v~i~~~~~~~-~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l--~~~dvl~~n~~E~~~l~~ 228 (341)
.+..+-++.++++--++.. ..+.+....+.+.++++|+++||-.....+.-.+..++++ .+.++|+.|..|...|.+
T Consensus 44 ~e~~~~a~al~iNiGTl~~~~~~~m~~A~~~A~~~~~PvVLDPVgvGas~~R~~~~~~LL~~~~~~vIrGN~sEI~aLag 123 (246)
T PF02110_consen 44 EEFASIADALVINIGTLTDERIEAMKKAAKAANELGIPVVLDPVGVGASKFRTEFALELLNNYKPTVIRGNASEIAALAG 123 (246)
T ss_dssp HHHHHCTSEEEEESTTSSHHHHHHHHHHHHHHHHTT--EEEE-TTBTTBHHHHHHHHHHHCHS--SEEEEEHHHHHHHHT
T ss_pred HHHHHHcCEEEEECCCCCHhHHHHHHHHHHHHHHcCCCEEEeCcccCCcHHHHHHHHHHHHhCCCcEEEeCHHHHHHHhC
Confidence 3556778888886433211 1356778888899999999999965433333344466777 468999999999999987
Q ss_pred hc----CCCC----CCHHHHHHHHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHH
Q 019448 229 VQ----GWET----DDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVG 300 (341)
Q Consensus 229 ~~----~~~~----~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~a 300 (341)
.. +.+. .+..+.++.+.+ +.+ ..|++| |+.-.. .++...+.++.= +.-.-..||.|+...|
T Consensus 124 ~~~~~kGVDs~~~~~~~~~~a~~lA~-----k~~-~vVvvT-G~~D~I-sdg~~~~~i~nG---~~~l~~itGtGC~lga 192 (246)
T PF02110_consen 124 EDSKAKGVDSGDSDEDAIEAAKQLAQ-----KYN-CVVVVT-GEVDYI-SDGNRVYRIPNG---SPLLSKITGTGCMLGA 192 (246)
T ss_dssp CCCCSCSSSSSCGSHHHHHHHHHHHH-----HTT-SEEEEE-SSSEEE-EESSCEEEECSS---SGGGGGSTTHHHHHHH
T ss_pred cCCCCCCcCcCCcchHHHHHHHHHHH-----hcC-CEEEEe-cCCcEE-ECCCeEEEeCCC---ChHhcceeccchHHHH
Confidence 53 2221 113466666643 222 344555 665543 345555555432 1244567999999877
Q ss_pred HHHHHHhcCCCHHHHHHHHHH
Q 019448 301 GFLSQLVQEKPIEECVRAGCY 321 (341)
Q Consensus 301 g~~~~l~~g~~~~~a~~~a~~ 321 (341)
-+.+.+.-..+.-++...|..
T Consensus 193 liaaf~av~~d~~~aa~~a~~ 213 (246)
T PF02110_consen 193 LIAAFLAVAEDPLEAAVAAVA 213 (246)
T ss_dssp HHHHHHCCCSSHHHHHHHHHH
T ss_pred HHHHHHhccccchHHHHHHHH
Confidence 777777665666666554443
No 86
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=97.74 E-value=0.00096 Score=56.69 Aligned_cols=167 Identities=15% Similarity=0.227 Sum_probs=105.0
Q ss_pred hhhccceEEEEeccccccCH---HHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhh
Q 019448 153 ALVEKAKYFYIAGFFLTVSP---DSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKV 229 (341)
Q Consensus 153 ~~l~~~~~v~i~~~~~~~~~---~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~ 229 (341)
..+.+-++++|++ .+..++ ..+..+++.++++++|+++|..+-+......+.+-.-.+ .-++.||.-|+.+|++.
T Consensus 97 k~L~RlhavVIGP-GLGRdp~~~k~i~~iley~~~~dvP~VIDaDGL~Lv~q~~e~l~~~~~-~viLTPNvvEFkRLcd~ 174 (306)
T KOG3974|consen 97 KLLQRLHAVVIGP-GLGRDPAILKEIAKILEYLRGKDVPLVIDADGLWLVEQLPERLIGGYP-KVILTPNVVEFKRLCDA 174 (306)
T ss_pred HHHhheeEEEECC-CCCCCHHHHHHHHHHHHHHhcCCCcEEEcCCceEehhhchhhhhccCc-eeeeCCcHHHHHHHHHH
Confidence 3577788999876 344444 567889999999999999999876544444432211122 24777999999999986
Q ss_pred cCCCCCCHHHHHHHHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHh--
Q 019448 230 QGWETDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLV-- 307 (341)
Q Consensus 230 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~-- 307 (341)
...+ .|....+..|.. +. ....|+-.|+...++..+.+.+..+ .+ -...-.-|-||..++.+..-+.
T Consensus 175 ~l~~-~d~~~~~~~L~~-----~l-~nv~vvqKG~~D~ils~~~ev~~~s-~e---Gs~kRcGGQGDiLaGsla~fl~w~ 243 (306)
T KOG3974|consen 175 ELDK-VDSHSQMQHLAA-----EL-MNVTVVQKGESDKILSPDSEVRVCS-TE---GSLKRCGGQGDILAGSLATFLSWA 243 (306)
T ss_pred hhcc-ccchHHHHHHHH-----Hh-cCeEEEEecCCceeeCCCCeeEEcc-CC---CCccccCCCcchhhhHHHHHHHHH
Confidence 4422 233344444421 11 2346777788776555444443332 22 1445566899999887765442
Q ss_pred --cCCCHHHHHHHHHHHhhhhhhhccc
Q 019448 308 --QEKPIEECVRAGCYTSHVIIQRSGC 332 (341)
Q Consensus 308 --~g~~~~~a~~~a~~~Aa~~v~~~g~ 332 (341)
.....+++...|..+++..++..|.
T Consensus 244 k~~~~e~~~~~~~a~~a~s~~vr~a~r 270 (306)
T KOG3974|consen 244 KLLSGEQDSAAFLAAVAGSIMVRRAGR 270 (306)
T ss_pred HhccCCccchhhhhhhhhHHHHHHHHH
Confidence 2345557788888888877766554
No 87
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=97.73 E-value=0.00063 Score=58.93 Aligned_cols=153 Identities=19% Similarity=0.140 Sum_probs=96.9
Q ss_pred hhhccceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCC
Q 019448 153 ALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGW 232 (341)
Q Consensus 153 ~~l~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~ 232 (341)
..+++.|.+++.+ .+....+ ...+++...+...++++|...-....... ...+.--++.|+..|+.+|++....
T Consensus 63 ~~~~~~~av~iGP-Glg~~~~-~~~~~~~~~~~~~p~VlDADaL~~l~~~~----~~~~~~~IlTPH~gE~~rL~~~~~~ 136 (242)
T PF01256_consen 63 ELLEKADAVVIGP-GLGRDEE-TEELLEELLESDKPLVLDADALNLLAENP----KKRNAPVILTPHPGEFARLLGKSVE 136 (242)
T ss_dssp HHHCH-SEEEE-T-T-SSSHH-HHHHHHHHHHHCSTEEEECHHHHCHHHCC----CCSSSCEEEE-BHHHHHHHHTTTCH
T ss_pred hhhccCCEEEeec-CCCCchh-hHHHHHHHHhhcceEEEehHHHHHHHhcc----ccCCCCEEECCCHHHHHHHhCCccc
Confidence 4578899999975 3333333 33455555666777999986533211100 1233456777999999999986432
Q ss_pred CCCCHHHHHHHHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCH
Q 019448 233 ETDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPI 312 (341)
Q Consensus 233 ~~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~ 312 (341)
..++..++++++.+ +. +.+|+=.|..-.....+++.+..+.- ..-.-+-|.||+.++-+..-+.++.++
T Consensus 137 ~~~~~~~~a~~~a~-----~~--~~~vvLKG~~t~I~~p~~~~~~n~~g----n~~la~gGsGDvLaGii~~llaq~~~~ 205 (242)
T PF01256_consen 137 IQEDRIEAAREFAK-----EY--GAVVVLKGAVTIIASPGGRVYVNPTG----NPGLATGGSGDVLAGIIAGLLAQGYDP 205 (242)
T ss_dssp HCCSHHHHHHHHHH-----HH--TSEEEEESTSSEEEEETSEEEEE--------GGGSSTTHHHHHHHHHHHHHHHTSSH
T ss_pred chhhHHHHHHHHHh-----hc--CcEEEEeCCCcEEEecCcceeEeCCC----CCCCCCCCcccHHHHHHHHHHHccCCH
Confidence 34567777777743 22 33555557766665556666655432 255778899999998888888999999
Q ss_pred HHHHHHHHHH
Q 019448 313 EECVRAGCYT 322 (341)
Q Consensus 313 ~~a~~~a~~~ 322 (341)
.+|...|+..
T Consensus 206 ~~Aa~~av~l 215 (242)
T PF01256_consen 206 FEAACLAVYL 215 (242)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888754
No 88
>PRK10565 putative carbohydrate kinase; Provisional
Probab=97.71 E-value=0.0015 Score=62.88 Aligned_cols=150 Identities=19% Similarity=0.093 Sum_probs=90.2
Q ss_pred hhccceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCC
Q 019448 154 LVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWE 233 (341)
Q Consensus 154 ~l~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~ 233 (341)
.+..+|.++++.- +..+ +....+++.+.+.+.|+++|+..-.+...... .....+|.||..|+.+|++....+
T Consensus 317 ~~~~~~a~viGpG-lg~~-~~~~~~~~~~~~~~~P~VLDAdaL~ll~~~~~-----~~~~~VLTPh~gE~~rL~~~~~~~ 389 (508)
T PRK10565 317 SLEWADVVVIGPG-LGQQ-EWGKKALQKVENFRKPMLWDADALNLLAINPD-----KRHNRVITPHPGEAARLLGCSVAE 389 (508)
T ss_pred HhhcCCEEEEeCC-CCCC-HHHHHHHHHHHhcCCCEEEEchHHHHHhhCcc-----ccCCeEECCCHHHHHHHhCCChhh
Confidence 3467788888752 2222 33355557777778899999976432111110 122468999999999998732211
Q ss_pred C-CCHHHHHHHHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcCCCH
Q 019448 234 T-DDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQEKPI 312 (341)
Q Consensus 234 ~-~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g~~~ 312 (341)
. .+..+.++.+. +..-..+|+ .|..- ++.+.++..++...- ..-.-++|.||+.+|.+.+-+.++.++
T Consensus 390 v~~~~~~~a~~~a------~~~~~~vvl-KG~~~-iI~~~~~~~~~~~~G---~~~ma~~GsGDvLaGiIaalla~g~~~ 458 (508)
T PRK10565 390 IESDRLLSARRLV------KRYGGVVVL-KGAGT-VIAAEPDALAIIDVG---NAGMASGGMGDVLSGIIGALLGQKLSP 458 (508)
T ss_pred hhhhHHHHHHHHH------HHhCCEEEE-eCCCc-EEEcCCceEEEECCC---CCCCCCCChHHHHHHHHHHHHHcCCCH
Confidence 1 23445566553 222234555 45543 444433333333211 244567999999999888888889899
Q ss_pred HHHHHHHHH
Q 019448 313 EECVRAGCY 321 (341)
Q Consensus 313 ~~a~~~a~~ 321 (341)
.+|+..|+.
T Consensus 459 ~~Aa~~a~~ 467 (508)
T PRK10565 459 YDAACAGCV 467 (508)
T ss_pred HHHHHHHHH
Confidence 888888874
No 89
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=97.53 E-value=0.0049 Score=52.75 Aligned_cols=156 Identities=17% Similarity=0.121 Sum_probs=95.1
Q ss_pred hhhccceEEEEeccccc-cCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCC--CcEEecCHHHHHHHhhh
Q 019448 153 ALVEKAKYFYIAGFFLT-VSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPY--MDYIFGNETEARTFSKV 229 (341)
Q Consensus 153 ~~l~~~~~v~i~~~~~~-~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~--~dvl~~n~~E~~~l~~~ 229 (341)
+..+-++.++|+--++. ...+.+...++.+.+.+.|+++||-...-.+.-++...+++.+ .++|..|.-|...|.+.
T Consensus 51 e~~kia~AL~INIGTL~~~~~~~m~~A~~~An~~~~PvvLDPVgvgAt~~R~~~~~~LL~~~~~~~IrGN~sEI~~Lag~ 130 (265)
T COG2145 51 EFAKIADALLINIGTLSAERIQAMRAAIKAANESGKPVVLDPVGVGATKFRTKFALELLAEVKPAAIRGNASEIAALAGE 130 (265)
T ss_pred HHHHhccceEEeeccCChHHHHHHHHHHHHHHhcCCCEEecCccCCchHHHHHHHHHHHHhcCCcEEeccHHHHHHHhcc
Confidence 44556677777644432 2346788888999999999999996543333333445667653 69999999999999864
Q ss_pred c----CCC----CCCHHHHHHHHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHH
Q 019448 230 Q----GWE----TDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGG 301 (341)
Q Consensus 230 ~----~~~----~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag 301 (341)
. |.+ ..++.++++.+.+ +.+ ..+++| |+... +.++++.+.+.-- +.-.-..||+|+...|-
T Consensus 131 ~~~~kGVDa~~~~~~~~~~a~~~A~-----~~~-~vvvvT-G~vD~-Isdg~~~~~i~nG---~pll~~ItGtGCllgav 199 (265)
T COG2145 131 AGGGKGVDAGDGAADAIEAAKKAAQ-----KYG-TVVVVT-GEVDY-ISDGTRVVVIHNG---SPLLGKITGTGCLLGAV 199 (265)
T ss_pred cccccccccccchhhHHHHHHHHHH-----HhC-cEEEEE-CCeeE-EEcCCeEEEEECC---CcHHhhhhccccHHHHH
Confidence 3 222 3455566666532 222 335555 65443 2344454444321 11344678999988777
Q ss_pred HHHHHhcCCC-HHHHHHHH
Q 019448 302 FLSQLVQEKP-IEECVRAG 319 (341)
Q Consensus 302 ~~~~l~~g~~-~~~a~~~a 319 (341)
..+.+....+ +-+|..-|
T Consensus 200 ~aaF~av~~d~~~~A~~~A 218 (265)
T COG2145 200 VAAFLAVEKDPLLDAAAEA 218 (265)
T ss_pred HHHHHhcCCCHHHHHHHHH
Confidence 7776666666 34444443
No 90
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=96.41 E-value=0.043 Score=51.71 Aligned_cols=190 Identities=14% Similarity=0.054 Sum_probs=96.6
Q ss_pred CCCCCceEecccccccHHHHHh-ccCCceEecCchHHHHHHHHHHHhcCCC-cEEEEeeeecCchhHHHHHHHHhcCcce
Q 019448 30 DIKLNNAILAEEKHLPLYDEMA-SKYNVEYIAGGATQNSIRVAQWMLQIPG-ATSYIGCIGKDKFGEEMKKNSKLAGVNV 107 (341)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~GG~a~n~a~~l~~l~~lg~-~v~~i~~vG~D~~g~~i~~~l~~~gi~~ 107 (341)
.+...+..+.+.+-+....... .......+.||.|.-+|..++. +|. +|.+-+++.. +.....+.+.+|-.
T Consensus 74 ~G~aAEr~v~n~~lf~~l~~~~~~~~~~~~~mGGnAgimAn~la~---~g~~~Vil~~p~~~----k~~~~L~~d~~i~~ 146 (445)
T cd01938 74 RGAAAERFVSSEEVFEYLVEWAKEIPWDELRMGGNAGLMANRLAG---EGDLKVLLGVPQSS----KLQAELFLDGPIVV 146 (445)
T ss_pred CCCceEeeecCHHHHHHHHHHhhccCCceEEeCChHHHHHHHHHh---cCCceEEEecCCCc----HHHHHhCCCCCeee
Confidence 4444555555543322222211 1224568999999888888775 557 7777776543 22233333222211
Q ss_pred eeeecCCCCceeEEEEEe-CCcc-----------ceeecccccccCCcccCCCcchh-hhhcc-ceEEEEecccccc---
Q 019448 108 HYYEDESASTGTCAVCVV-GGER-----------SLVANLSAANCYKSEHLKKPENW-ALVEK-AKYFYIAGFFLTV--- 170 (341)
Q Consensus 108 ~~~~~~~~~t~~~~~~~~-~g~~-----------~~~~~~~~~~~~~~~~~~~~~~~-~~l~~-~~~v~i~~~~~~~--- 170 (341)
........+...-+++-. .|++ -++.....+. +. ..++.. ...+. +|+++++|+.+..
T Consensus 147 p~~e~~~~~d~IHlIlEy~~G~~~~~~~aPraNRfI~~~d~~n~-l~----~~ee~~~~i~~~~pDl~vlSGlqmm~~~~ 221 (445)
T cd01938 147 PTFENLIEEDEIHLILEYPRGESWGDFVAPRANRFIFHDDDNNP-ML----MREEFFSSILEFQPDLAVLSGLQMMEGQS 221 (445)
T ss_pred cccccCCCCCccEEEEEcCCCCEecceEcCCCCeEEEecCCcch-hh----hhHHHHHHHhhcCCCEEEEechhhhcccC
Confidence 111100111222222222 3432 2222211111 10 001112 22333 8999999998422
Q ss_pred -CHHHHHHHHHHHH----h--CCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcC
Q 019448 171 -SPDSIQLVAEHAA----A--NNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQG 231 (341)
Q Consensus 171 -~~~~~~~~~~~a~----~--~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~ 231 (341)
+.....+.++.++ . ..+++-+.+.+..-...-.+.+..+++++|-+=+|++|+..+....+
T Consensus 222 ~~~~~~~~~l~~~~~~l~~l~~~i~iH~E~As~~d~~l~~~i~~~ilp~VDSlGmNEqEL~~l~~~lg 289 (445)
T cd01938 222 FDEGTRKELLERVKSILEILPPLIPIHLELASTVDEELREEILHEVVPYVDSLGLNEQELANLLQVLG 289 (445)
T ss_pred CChhhHHHHHHHHHHHHHhccccCcEEEEecccccHHHHHHHHHHhcccccccccCHHHHHHHHHHhC
Confidence 1233333333322 2 23778888876543344555567889999999999999998876543
No 91
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=95.90 E-value=0.31 Score=43.18 Aligned_cols=138 Identities=21% Similarity=0.167 Sum_probs=71.9
Q ss_pred hccceEEEEeccccccCHHHHHHHHHHHHhCC-CeEEEeCCchhHHHHHHHHHHhhcCC-CcEEecCHHHHHHHhhhcC-
Q 019448 155 VEKAKYFYIAGFFLTVSPDSIQLVAEHAAANN-KVFMMNLSAPFICEFFKDALEKVLPY-MDYIFGNETEARTFSKVQG- 231 (341)
Q Consensus 155 l~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~-~~v~~d~~~~~~~~~~~~~~~~~l~~-~dvl~~n~~E~~~l~~~~~- 231 (341)
.+..|.+++++ .+....+. .++++..-+.. .++++|...-..- .....+... .-|+.|+.-|+.+|++...
T Consensus 99 ~~~~~avviGp-GlG~~~~~-~~~~~~~l~~~~~p~ViDADaL~~l----a~~~~~~~~~~~VlTPH~gEf~rL~g~~~~ 172 (284)
T COG0063 99 VERADAVVIGP-GLGRDAEG-QEALKELLSSDLKPLVLDADALNLL----AELPDLLDERKVVLTPHPGEFARLLGTEVD 172 (284)
T ss_pred hccCCEEEECC-CCCCCHHH-HHHHHHHHhccCCCEEEeCcHHHHH----HhCcccccCCcEEECCCHHHHHHhcCCccc
Confidence 46788899874 23333332 23333333333 7888888653210 001122222 2566799999999987422
Q ss_pred CCCCCHHHHHHHHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHHhcC
Q 019448 232 WETDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQLVQE 309 (341)
Q Consensus 232 ~~~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l~~g 309 (341)
....+..+.++.+.+ + .+.+||=.|..-.....+++.+..+ .- ..-.-+-|.||+.++-+.+-|.++
T Consensus 173 ~~~~~r~~~a~~~a~------~-~~~vvVLKG~~tvI~~~~g~~~~n~-~G---~~~ma~GGtGDvLaGii~alLAq~ 239 (284)
T COG0063 173 EIEVDRLEAARELAA------K-YGAVVVLKGAVTVIADPDGEVFVNP-TG---NPGMATGGTGDVLAGIIGALLAQG 239 (284)
T ss_pred ccccchHHHHHHHHH------H-cCCEEEEeCCCCEEEcCCCcEEEcC-CC---CHHhccCcchHHHHHHHHHHHhCC
Confidence 112344566666632 1 2335555566555443222333322 11 133445699999766555555555
No 92
>COG4809 Archaeal ADP-dependent phosphofructokinase/glucokinase [Carbohydrate transport and metabolism]
Probab=94.20 E-value=2.6 Score=38.60 Aligned_cols=79 Identities=13% Similarity=0.071 Sum_probs=54.7
Q ss_pred hhhccceEEEEecccccc----CH-------HHHHHHHHHHHh-CCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCH
Q 019448 153 ALVEKAKYFYIAGFFLTV----SP-------DSIQLVAEHAAA-NNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNE 220 (341)
Q Consensus 153 ~~l~~~~~v~i~~~~~~~----~~-------~~~~~~~~~a~~-~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~ 220 (341)
+..+..|...++|++.-. +. +...+-++..++ .++++-+.+.+..-...-.+.+..++++++-+=+|+
T Consensus 221 ~i~~~vDgaiiSGyq~l~eey~dg~t~~~yle~s~e~i~~lk~~~~irvHlEfas~~d~~irk~i~~~il~~v~SvGldE 300 (466)
T COG4809 221 EIAKEVDGAIISGYQGLKEEYSDGSTYKYYLERSREDIKALKDRENIRVHLEFASIQDRKIRKEILTNILSIVYSVGLDE 300 (466)
T ss_pred HHhhhcceeeeechhhhhhhcCCCCcHHHHHHHHHHHHHHHhccccceEEEEecccccHHHHHHHHHHHHhhhhhcCCCH
Confidence 455779999999998411 11 233344444555 678888888765544445566777999999999999
Q ss_pred HHHHHHhhhcC
Q 019448 221 TEARTFSKVQG 231 (341)
Q Consensus 221 ~E~~~l~~~~~ 231 (341)
.|+..+....+
T Consensus 301 ~ElA~vl~vlG 311 (466)
T COG4809 301 VELANVLNVLG 311 (466)
T ss_pred HHHHHHHHhhC
Confidence 99987766554
No 93
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=88.02 E-value=3.8 Score=36.95 Aligned_cols=184 Identities=14% Similarity=0.155 Sum_probs=93.3
Q ss_pred eEecccccccH-HHHHhccCCceEecCchHHHHHHHHHHHhcCCCcEEEEeeeecCchhHHHHHHHHhcCcceeeeecCC
Q 019448 36 AILAEEKHLPL-YDEMASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDES 114 (341)
Q Consensus 36 ~~~~~~~~~~~-~~~~~~~~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~ 114 (341)
++.++.+.+.. ..+......+.++.||++.-+|+-... . ..+.++|+.|.-.. +-.+-+ -+.+..-++++
T Consensus 117 R~Man~~~F~v~~Ak~~~~~R~~~~mGGNA~LMA~R~~~--~--~~~~LlG~~~~R~~----~~L~P~-~~R~~~~~I~~ 187 (478)
T KOG4184|consen 117 RVMANSTLFTVGYAKVMDKERINWYMGGNAPLMAVRFFM--E--GAQVLLGAHMSRKL----RPLLPK-EIRLAGDEIPN 187 (478)
T ss_pred hhhcccchhhhhhhhhhhhhhhhhhccCCchHHHHHHHh--c--cceeeecccccchh----ccccch-hhhcccCcCcC
Confidence 34444444432 223444456778999988887776552 2 58899999886432 211111 13333333333
Q ss_pred CCceeEEEEEeCCccce-eeccccc------ccCCcccCCCcchhhhh--ccceEEEEecccc-cc-CHH----HHHHHH
Q 019448 115 ASTGTCAVCVVGGERSL-VANLSAA------NCYKSEHLKKPENWALV--EKAKYFYIAGFFL-TV-SPD----SIQLVA 179 (341)
Q Consensus 115 ~~t~~~~~~~~~g~~~~-~~~~~~~------~~~~~~~~~~~~~~~~l--~~~~~v~i~~~~~-~~-~~~----~~~~~~ 179 (341)
.+.... ..+..|+..- ...+.++ ++.++...-.+.+.+.+ -.+|+++++|..+ +. +.+ .+.++-
T Consensus 188 DdiHlI-LEYK~Gd~~G~~VAP~anR~I~~~D~~n~~m~~~E~f~~Al~~fqPdLvVvsGlhmme~qske~r~~rl~~V~ 266 (478)
T KOG4184|consen 188 DDIHLI-LEYKAGDKWGPYVAPRANRYILHNDRNNPHMRAVEQFTDALKMFQPDLVVVSGLHMMEMQSKEEREARLQQVV 266 (478)
T ss_pred CceEEE-EEeccCCcccccccccccceeeecCCCChHHHHHHHHHHHHHHhCCCEEEEechhHHhhhhHHHHHHHHHHHH
Confidence 222211 1222333210 1111111 12222211111222333 3579999999874 22 222 233333
Q ss_pred HHHH--hCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhh
Q 019448 180 EHAA--ANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKV 229 (341)
Q Consensus 180 ~~a~--~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~ 229 (341)
+... ..|+++-++..+..-.....+..-+.+|++|-+=+|++|+.-|...
T Consensus 267 r~L~~iP~gip~HlElaS~~~~~l~~~i~h~VlPyVdSLGlNEQEL~fL~q~ 318 (478)
T KOG4184|consen 267 RSLSDIPTGIPVHLELASMTNRELMSSIVHQVLPYVDSLGLNEQELLFLTQS 318 (478)
T ss_pred HHHhcCCCCCchhhhHhHHHHHHHHHHHHHHhhhhccccCCCHHHHHHHHHH
Confidence 3332 2456777777654322223444557899999999999999888654
No 94
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=86.36 E-value=3.5 Score=34.99 Aligned_cols=68 Identities=10% Similarity=-0.000 Sum_probs=50.4
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEec-----CHHHHHHHhh
Q 019448 157 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFG-----NETEARTFSK 228 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~-----n~~E~~~l~~ 228 (341)
+...|.++|--+.+.++.+..+++.+++.|+.+.+|-.+.. ..+.++++++++|.+.+ +.+.-+.+++
T Consensus 38 sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~----~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG 110 (213)
T PRK10076 38 SGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDA----PASKLLPLAKLCDEVLFDLKIMDATQARDVVK 110 (213)
T ss_pred CCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCC----CHHHHHHHHHhcCEEEEeeccCCHHHHHHHHC
Confidence 34688888866667789999999999999999999988754 23446677777777654 5555556665
No 95
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=78.20 E-value=5.9 Score=33.21 Aligned_cols=114 Identities=8% Similarity=-0.015 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcCCCcEEEEeeeecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEeCCccce-eecccccccCCc
Q 019448 65 QNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSL-VANLSAANCYKS 143 (341)
Q Consensus 65 ~n~a~~l~~l~~lg~~v~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~-~~~~~~~~~~~~ 143 (341)
.+..-++.+|-+.+..|.|+|.--.++. +.+.+.|++.|.+++--.+...-+..+.++..++-|-+ +....+...+..
T Consensus 26 pga~eAl~rLr~~~~kVkFvTNttk~Sk-~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~a~~dF~g 104 (262)
T KOG3040|consen 26 PGAVEALKRLRDQHVKVKFVTNTTKESK-RNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDDALEDFDG 104 (262)
T ss_pred CCHHHHHHHHHhcCceEEEEecCcchhH-HHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEcccchhhCCC
Confidence 3445567776667899999998877654 66888899999998764332222332222223444433 333333333332
Q ss_pred ccCCCcchhhhhccceEEEEeccccccCHHHHHHHHHHHHhCCCe
Q 019448 144 EHLKKPENWALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKV 188 (341)
Q Consensus 144 ~~~~~~~~~~~l~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~ 188 (341)
.+ -...++|++.--.-..+.+.+.+..+.+.+...+
T Consensus 105 id---------Ts~pn~VViglape~F~y~~ln~AFrvL~e~~k~ 140 (262)
T KOG3040|consen 105 ID---------TSDPNCVVIGLAPEGFSYQRLNRAFRVLLEMKKP 140 (262)
T ss_pred cc---------CCCCCeEEEecCcccccHHHHHHHHHHHHcCCCC
Confidence 22 2356788875422234567788888877776543
No 96
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=77.85 E-value=6.5 Score=33.55 Aligned_cols=51 Identities=18% Similarity=0.145 Sum_probs=41.5
Q ss_pred ccceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEe
Q 019448 156 EKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIF 217 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~ 217 (341)
...|.+.++|+. ++..+.+.++++..|+..+|+++.|++.. .+.+++|.++
T Consensus 26 ~gtdai~vGGS~-~vt~~~~~~~v~~ik~~~lPvilfp~~~~----------~i~~~aDa~l 76 (223)
T TIGR01768 26 SGTDAILIGGSQ-GVTYEKTDTLIEALRRYGLPIILFPSNPT----------NVSRDADALF 76 (223)
T ss_pred cCCCEEEEcCCC-cccHHHHHHHHHHHhccCCCEEEeCCCcc----------ccCcCCCEEE
Confidence 346999999854 56778899999999999999999998743 6778888877
No 97
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=73.03 E-value=11 Score=32.50 Aligned_cols=52 Identities=8% Similarity=0.038 Sum_probs=41.8
Q ss_pred hccceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEe
Q 019448 155 VEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIF 217 (341)
Q Consensus 155 l~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~ 217 (341)
....|.+.++|+. ++..+.+.++++..|+..+|+++.|++.. .+.+++|.++
T Consensus 30 ~~gtdai~vGGS~-~vt~~~~~~~v~~ik~~~lPvilfp~~~~----------~i~~~aDa~l 81 (232)
T PRK04169 30 ESGTDAIIVGGSD-GVTEENVDELVKAIKEYDLPVILFPGNIE----------GISPGADAYL 81 (232)
T ss_pred hcCCCEEEEcCCC-ccchHHHHHHHHHHhcCCCCEEEeCCCcc----------ccCcCCCEEE
Confidence 4567999999854 56778889999999988889999998743 6778888877
No 98
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=72.72 E-value=36 Score=29.83 Aligned_cols=81 Identities=16% Similarity=0.120 Sum_probs=55.1
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEe-----cCHHHHHHHhhhcC
Q 019448 157 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIF-----GNETEARTFSKVQG 231 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~-----~n~~E~~~l~~~~~ 231 (341)
..+.|.+++--+.+..+.+.++++.+++.|+++.+|-.... .++..+++++..|.+. .+++--+.+++..
T Consensus 83 ~~~gvt~SGGEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~----~~~~~~~l~~~~D~v~~DlK~~~~~~y~~~tg~~- 157 (260)
T COG1180 83 SGGGVTFSGGEPTLQAEFALDLLRAAKERGLHVALDTNGFL----PPEALEELLPLLDAVLLDLKAFDDELYRKLTGAD- 157 (260)
T ss_pred CCCEEEEECCcchhhHHHHHHHHHHHHHCCCcEEEEcCCCC----CHHHHHHHHhhcCeEEEeeccCChHHHHHHhCCC-
Confidence 67888988866667789999999999999999999987764 2333456666666655 3444466666532
Q ss_pred CCCCCHHHHHHHH
Q 019448 232 WETDDVEEIALKL 244 (341)
Q Consensus 232 ~~~~d~~~~~~~l 244 (341)
.+...+.++.+
T Consensus 158 --~~~vl~~~~~l 168 (260)
T COG1180 158 --NEPVLENLELL 168 (260)
T ss_pred --cHHHHHHHHHH
Confidence 23334445554
No 99
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=71.86 E-value=27 Score=28.65 Aligned_cols=46 Identities=17% Similarity=0.222 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEe
Q 019448 172 PDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIF 217 (341)
Q Consensus 172 ~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~ 217 (341)
.+.+..+++.+.+++.++++=-+.+...+...+.+++-.+..++.-
T Consensus 34 ~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g 79 (177)
T TIGR00696 34 PDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVG 79 (177)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 4667788888877777766666656555555566666667766654
No 100
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=70.30 E-value=21 Score=29.07 Aligned_cols=78 Identities=13% Similarity=0.116 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCCHHHHHHHHhcCCccc
Q 019448 172 PDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKAS 251 (341)
Q Consensus 172 ~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d~~~~~~~l~~~~~~~ 251 (341)
.+.+..+++.+.+.+.++++=-+.+.......+.+.+..+..+++-...-. .+.++.+++++.+ .
T Consensus 34 ~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~---------f~~~~~~~i~~~I------~ 98 (172)
T PF03808_consen 34 SDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGY---------FDEEEEEAIINRI------N 98 (172)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCC---------CChhhHHHHHHHH------H
Confidence 356777777777777776665555554444555566666666665321110 0123344555555 4
Q ss_pred cCCccEEEEEeCC
Q 019448 252 EIRKRTAVITQGA 264 (341)
Q Consensus 252 ~~~~~~vvvt~G~ 264 (341)
+.++..++|-+|.
T Consensus 99 ~~~pdiv~vglG~ 111 (172)
T PF03808_consen 99 ASGPDIVFVGLGA 111 (172)
T ss_pred HcCCCEEEEECCC
Confidence 4556666666665
No 101
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=65.93 E-value=34 Score=27.71 Aligned_cols=104 Identities=14% Similarity=0.119 Sum_probs=58.9
Q ss_pred chhHHHHHHHHhcCcceeeee---cCCCCceeEEEEEe--CCccceeecccccc-cCC-----cccCC---Ccchhhhhc
Q 019448 91 KFGEEMKKNSKLAGVNVHYYE---DESASTGTCAVCVV--GGERSLVANLSAAN-CYK-----SEHLK---KPENWALVE 156 (341)
Q Consensus 91 ~~g~~i~~~l~~~gi~~~~~~---~~~~~t~~~~~~~~--~g~~~~~~~~~~~~-~~~-----~~~~~---~~~~~~~l~ 156 (341)
..-..+.+.|++.|..+-.+. +..+....-+.++| +|++..+.+.+... .+. .+.+. .+....+++
T Consensus 20 Tl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~le~i~~~al~rA~~ 99 (179)
T COG1618 20 TLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEGLEEIAIPALRRALE 99 (179)
T ss_pred HHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHHHHHHhHHHHHHHhh
Confidence 455667888888887776542 22333444444554 68887766544311 111 11111 122335567
Q ss_pred cceEEEEecccc-ccCHHHHHHHHHHHHhCCCeEEEeCC
Q 019448 157 KAKYFYIAGFFL-TVSPDSIQLVAEHAAANNKVFMMNLS 194 (341)
Q Consensus 157 ~~~~v~i~~~~~-~~~~~~~~~~~~~a~~~~~~v~~d~~ 194 (341)
.+|++.++-..+ +.-...+...++..-..+.|+.+.+.
T Consensus 100 ~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlH 138 (179)
T COG1618 100 EADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLH 138 (179)
T ss_pred cCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEe
Confidence 789999997763 33344556666666666666666553
No 102
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=64.33 E-value=25 Score=30.58 Aligned_cols=100 Identities=14% Similarity=0.173 Sum_probs=68.6
Q ss_pred chhhhhccceEEEEecccccc---------------CHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCc
Q 019448 150 ENWALVEKAKYFYIAGFFLTV---------------SPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMD 214 (341)
Q Consensus 150 ~~~~~l~~~~~v~i~~~~~~~---------------~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~d 214 (341)
++.+.+.++++++.+|..... ..+.+..+++.+.+.+.+|++=-+.+.......+.+++-.++.+
T Consensus 57 e~~~~i~~A~li~pDG~gvV~~ar~~~g~~~~~rv~G~Dl~~~Ll~~a~~~~~~vfllGgkp~V~~~a~~~l~~~~p~l~ 136 (253)
T COG1922 57 EFREILNQADLILPDGIGVVRAARRLLGQPLPERVAGTDLVEALLKRAAEEGKRVFLLGGKPGVAEQAAAKLRAKYPGLK 136 (253)
T ss_pred HHHHHHhhcCEEccCchhHHHHHHHHhCccCcccCChHHHHHHHHHHhCccCceEEEecCCHHHHHHHHHHHHHHCCCce
Confidence 345678889999999875311 13678899999999888888877777776667777888888777
Q ss_pred EEecCHHHHHHHhhhcCCCCCCHHHHHHHHhcCCccccCCccEEEEEeCC
Q 019448 215 YIFGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRTAVITQGA 264 (341)
Q Consensus 215 vl~~n~~E~~~l~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~ 264 (341)
++-...--... .+. +.+++.+ ...++..++|-+|.
T Consensus 137 ivg~h~GYf~~--------~e~-~~i~~~I------~~s~pdil~VgmG~ 171 (253)
T COG1922 137 IVGSHDGYFDP--------EEE-EAIVERI------AASGPDILLVGMGV 171 (253)
T ss_pred EEEecCCCCCh--------hhH-HHHHHHH------HhcCCCEEEEeCCC
Confidence 77655321111 111 4666677 55677888888775
No 103
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=62.98 E-value=19 Score=30.81 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=41.4
Q ss_pred hccceEEEEeccccccCHHHHHHHHHHHH-hCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEe
Q 019448 155 VEKAKYFYIAGFFLTVSPDSIQLVAEHAA-ANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIF 217 (341)
Q Consensus 155 l~~~~~v~i~~~~~~~~~~~~~~~~~~a~-~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~ 217 (341)
-...|.+.++|+. ....+.+.++++..+ +.++|+++.|++.. .+.+++|.++
T Consensus 39 ~~GTDaImIGGS~-gvt~~~~~~~v~~ik~~~~lPvilfP~~~~----------~is~~aDavf 91 (240)
T COG1646 39 EAGTDAIMIGGSD-GVTEENVDNVVEAIKERTDLPVILFPGSPS----------GISPYADAVF 91 (240)
T ss_pred HcCCCEEEECCcc-cccHHHHHHHHHHHHhhcCCCEEEecCChh----------ccCccCCeEE
Confidence 3568999999854 667788889999888 78899999998754 5667887776
No 104
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=61.23 E-value=47 Score=27.00 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEe
Q 019448 172 PDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIF 217 (341)
Q Consensus 172 ~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~ 217 (341)
.+.+..+++.+.+++.++++=-+.+...+...+.+++..+..+++-
T Consensus 32 ~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g 77 (171)
T cd06533 32 SDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVG 77 (171)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 3556666666666666655555444444444444555566665554
No 105
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=60.05 E-value=75 Score=25.95 Aligned_cols=85 Identities=20% Similarity=0.241 Sum_probs=60.0
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCCCC
Q 019448 157 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWETDD 236 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~~d 236 (341)
+++.+...|+. ++.+.+..+.+.++.+|+.++.||..+- +.-+..+.+.+|.+--.++...++..=-+..|++..+
T Consensus 22 d~~~I~T~Gs~--i~~~~i~~i~~~~~~rgVIIfTDpD~~G--ekIRk~i~~~vp~~khafi~~~~a~~~~~~iGVE~As 97 (174)
T TIGR00334 22 DVDVIETNGSA--LKDETINLIKKAQKKQGVIILTDPDFPG--EKIRKKIEQHLPGYENCFIPKHLAKPNKKKIGVEEAS 97 (174)
T ss_pred CceEEEECCCc--cCHHHHHHHHHHhhcCCEEEEeCCCCch--HHHHHHHHHHCCCCeEEeeeHHhcCcCCCCcccCCCC
Confidence 47888888754 5778888888888889998888886432 3345667788898888888888865201223566667
Q ss_pred HHHHHHHHh
Q 019448 237 VEEIALKLS 245 (341)
Q Consensus 237 ~~~~~~~l~ 245 (341)
++.+.+.|.
T Consensus 98 ~e~I~~AL~ 106 (174)
T TIGR00334 98 VEAIIAALE 106 (174)
T ss_pred HHHHHHHHH
Confidence 777777773
No 106
>PRK05968 hypothetical protein; Provisional
Probab=56.95 E-value=1.3e+02 Score=28.14 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=27.8
Q ss_pred hccceEEEEeccc-cccCHHHHHHHHHHHHhCCCeEEEeCC
Q 019448 155 VEKAKYFYIAGFF-LTVSPDSIQLVAEHAAANNKVFMMNLS 194 (341)
Q Consensus 155 l~~~~~v~i~~~~-~~~~~~~~~~~~~~a~~~~~~v~~d~~ 194 (341)
+.+.++|+++..+ ...+...+.++.+.++++++++++|-.
T Consensus 145 i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a 185 (389)
T PRK05968 145 LPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNS 185 (389)
T ss_pred cccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECC
Confidence 3456777776433 233456788888889999998888874
No 107
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=55.77 E-value=40 Score=30.14 Aligned_cols=80 Identities=11% Similarity=0.015 Sum_probs=51.5
Q ss_pred ccCCcccCCCcchh--hhhccceEEEEeccccc-----cCHHHHHHHHHHHHhCCCeEEEeCCchhHHHH--HHHHHHhh
Q 019448 139 NCYKSEHLKKPENW--ALVEKAKYFYIAGFFLT-----VSPDSIQLVAEHAAANNKVFMMNLSAPFICEF--FKDALEKV 209 (341)
Q Consensus 139 ~~~~~~~~~~~~~~--~~l~~~~~v~i~~~~~~-----~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~--~~~~~~~~ 209 (341)
..++++++...-.. .......+|+++..... .+.+.+..+.+.|+++|+++.+|-.. .|... ....++++
T Consensus 104 G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGAR-l~~a~~~~~~~~~e~ 182 (290)
T PF01212_consen 104 GKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGAR-LANAAAALGVSLAEI 182 (290)
T ss_dssp TBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETT-HHHHHCHHHHHHHHH
T ss_pred CCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhh-HHHhhhcccccHHHH
Confidence 35666666530000 02245788898876532 36789999999999999999999974 34322 33447788
Q ss_pred cCCCcEEecC
Q 019448 210 LPYMDYIFGN 219 (341)
Q Consensus 210 l~~~dvl~~n 219 (341)
..++|.+.++
T Consensus 183 ~~~~D~v~~~ 192 (290)
T PF01212_consen 183 AAGADSVSFG 192 (290)
T ss_dssp HTTSSEEEEE
T ss_pred hhhCCEEEEE
Confidence 8999998875
No 108
>PRK05967 cystathionine beta-lyase; Provisional
Probab=55.58 E-value=1.1e+02 Score=28.70 Aligned_cols=38 Identities=21% Similarity=0.148 Sum_probs=28.8
Q ss_pred cceEEEEeccc-cccCHHHHHHHHHHHHhCCCeEEEeCC
Q 019448 157 KAKYFYIAGFF-LTVSPDSIQLVAEHAAANNKVFMMNLS 194 (341)
Q Consensus 157 ~~~~v~i~~~~-~~~~~~~~~~~~~~a~~~~~~v~~d~~ 194 (341)
+.++|+++... +......+..+.+.|+++|+.+++|-.
T Consensus 149 ~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t 187 (395)
T PRK05967 149 NTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNT 187 (395)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECC
Confidence 46788888533 334566788999999999999888875
No 109
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=55.24 E-value=69 Score=30.48 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=24.8
Q ss_pred cceEEEEecccccc-CHHHHHHHHHHHHhCCCeEEEeCC
Q 019448 157 KAKYFYIAGFFLTV-SPDSIQLVAEHAAANNKVFMMNLS 194 (341)
Q Consensus 157 ~~~~v~i~~~~~~~-~~~~~~~~~~~a~~~~~~v~~d~~ 194 (341)
+.++|++....... ..-.+..+.+.|+++|+++++|-.
T Consensus 147 ~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T 185 (432)
T PRK06702 147 KTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNT 185 (432)
T ss_pred CCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECC
Confidence 45677776432111 111378888889999999888885
No 110
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=54.61 E-value=38 Score=28.52 Aligned_cols=49 Identities=12% Similarity=0.195 Sum_probs=39.5
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHh-CCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEe
Q 019448 158 AKYFYIAGFFLTVSPDSIQLVAEHAAA-NNKVFMMNLSAPFICEFFKDALEKVLPYMDYIF 217 (341)
Q Consensus 158 ~~~v~i~~~~~~~~~~~~~~~~~~a~~-~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~ 217 (341)
.|.+.++|+ .+...+.+.++++.+|+ ..+|+++.|++.. .+.+++|.++
T Consensus 25 tDaI~VGGS-~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~----------~i~~~aD~~~ 74 (205)
T TIGR01769 25 TDAIMVGGS-LGIVESNLDQTVKKIKKITNLPVILFPGNVN----------GLSRYADAVF 74 (205)
T ss_pred CCEEEEcCc-CCCCHHHHHHHHHHHHhhcCCCEEEECCCcc----------ccCcCCCEEE
Confidence 699999986 35678889999999998 5689999998743 6678888776
No 111
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=53.05 E-value=29 Score=29.47 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=40.4
Q ss_pred ccceEEEEeccccccCHHHHHHHHHHHHhCCCe--EEEeCCchhHHHHHHHHHHhhcCCCcEEec
Q 019448 156 EKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKV--FMMNLSAPFICEFFKDALEKVLPYMDYIFG 218 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~--v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~ 218 (341)
.++|++-+.. + ..+.+.+++++.|+.|++ +.++|..+. +.++.+++.+|++.+
T Consensus 83 agad~It~H~---E-~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~------~~i~~~l~~vD~Vll 137 (220)
T COG0036 83 AGADIITFHA---E-ATEHIHRTIQLIKELGVKAGLVLNPATPL------EALEPVLDDVDLVLL 137 (220)
T ss_pred hCCCEEEEEe---c-cCcCHHHHHHHHHHcCCeEEEEECCCCCH------HHHHHHHhhCCEEEE
Confidence 3467777743 3 455678888889999988 889998765 567888999998874
No 112
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=53.03 E-value=1.6e+02 Score=25.93 Aligned_cols=183 Identities=21% Similarity=0.283 Sum_probs=99.3
Q ss_pred EeeeecCchhHHHHHHHHhcC-cceeeeecCCCCceeEEEEEeCCc-cc-eeecccccccCCcccCCCcchhhhhccceE
Q 019448 84 IGCIGKDKFGEEMKKNSKLAG-VNVHYYEDESASTGTCAVCVVGGE-RS-LVANLSAANCYKSEHLKKPENWALVEKAKY 160 (341)
Q Consensus 84 i~~vG~D~~g~~i~~~l~~~g-i~~~~~~~~~~~t~~~~~~~~~g~-~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (341)
|+.+|....|+.+..-|.+.| ++...+...+. +.+ +. +...++... .........++|+
T Consensus 4 IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~----------~~e~~~~l~~~~g~~~--------~~~~~~~~~~adv 65 (266)
T COG0345 4 IGFIGAGNMGEAILSGLLKSGALPPEEIIVTNR----------SEEKRAALAAEYGVVT--------TTDNQEAVEEADV 65 (266)
T ss_pred EEEEccCHHHHHHHHHHHhcCCCCcceEEEeCC----------CHHHHHHHHHHcCCcc--------cCcHHHHHhhCCE
Confidence 567777789999999988887 34222221111 111 11 211112110 1112356788999
Q ss_pred EEEeccccccCHHHHHHHHHHHHh--CC-CeEEEeCCchhHHHHHHHHHHhhcCCCcEEe--cCHHHHHHHhhhcCC---
Q 019448 161 FYIAGFFLTVSPDSIQLVAEHAAA--NN-KVFMMNLSAPFICEFFKDALEKVLPYMDYIF--GNETEARTFSKVQGW--- 232 (341)
Q Consensus 161 v~i~~~~~~~~~~~~~~~~~~a~~--~~-~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~--~n~~E~~~l~~~~~~--- 232 (341)
+++. .-|..+..+++.++. .+ ..+++-.+-. .+.++++++...++- ||.--.-. .+....
T Consensus 66 v~La-----vKPq~~~~vl~~l~~~~~~~lvISiaAGv~------~~~l~~~l~~~~vvR~MPNt~a~vg-~g~t~i~~~ 133 (266)
T COG0345 66 VFLA-----VKPQDLEEVLSKLKPLTKDKLVISIAAGVS------IETLERLLGGLRVVRVMPNTPALVG-AGVTAISAN 133 (266)
T ss_pred EEEE-----eChHhHHHHHHHhhcccCCCEEEEEeCCCC------HHHHHHHcCCCceEEeCCChHHHHc-CcceeeecC
Confidence 9995 467788888887774 22 3355555432 355778887666665 66443211 111111
Q ss_pred C--CCCHHHHHHHHhcCCccccCCccEEEEEeCCCceEEEECCeeEEEeceecCCCcccCCCCCchhhHHHHHHHH----
Q 019448 233 E--TDDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAGDAFVGGFLSQL---- 306 (341)
Q Consensus 233 ~--~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAGDaf~ag~~~~l---- 306 (341)
. .+...+.+..|.+ . -|+.++++--.. .-+...+|+|-+|.+-|+-.|
T Consensus 134 ~~~~~~~~~~v~~l~~-----~-------------------~G~v~~v~E~~~--da~TaisGSgPAyv~~~iEal~~ag 187 (266)
T COG0345 134 ANVSEEDKAFVEALLS-----A-------------------VGKVVEVEESLM--DAVTALSGSGPAYVFLFIEALADAG 187 (266)
T ss_pred ccCCHHHHHHHHHHHH-----h-------------------cCCeEEechHHh--hHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 1 1122223444421 1 122233331111 134567899999999988776
Q ss_pred -hcCCCHHHHHHHHHHH
Q 019448 307 -VQEKPIEECVRAGCYT 322 (341)
Q Consensus 307 -~~g~~~~~a~~~a~~~ 322 (341)
..|.+.++|.+++...
T Consensus 188 v~~Gl~~~~A~~l~~~t 204 (266)
T COG0345 188 VRLGLPREEARELAAQT 204 (266)
T ss_pred HHcCCCHHHHHHHHHHH
Confidence 4589999999998754
No 113
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=51.74 E-value=1.3e+02 Score=28.04 Aligned_cols=113 Identities=9% Similarity=0.018 Sum_probs=62.4
Q ss_pred cEEEEeeeecCchhHHHHH-HHHhcCcceeeeec-CCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhhhhcc
Q 019448 80 ATSYIGCIGKDKFGEEMKK-NSKLAGVNVHYYED-ESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWALVEK 157 (341)
Q Consensus 80 ~v~~i~~vG~D~~g~~i~~-~l~~~gi~~~~~~~-~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 157 (341)
++.++|+-| ..|+.+.+ .|++..+....+.. .... .|.+.. ...+. ......+.. ...+.+
T Consensus 3 ~VAIVGATG--~vG~ell~llL~~~~f~~~~l~~~ss~~---------sg~~~~-~f~g~--~~~v~~~~~---~~~~~~ 65 (369)
T PRK06598 3 KVGFVGWRG--MVGSVLMQRMVEENDFDLIEPVFFSTSQ---------AGGAAP-SFGGK--EGTLQDAFD---IDALKK 65 (369)
T ss_pred EEEEEeCCC--HHHHHHHHHHHhCCCCCcCcEEEecchh---------hCCccc-ccCCC--cceEEecCC---hhHhcC
Confidence 466777766 67888887 78777776332221 1111 111110 11010 001111110 123567
Q ss_pred ceEEEEeccccccCHHHHHHHHHHHHhCCCe-EEEeCCchhHHHHHHHHHHhhcCCCcEEe--cCHHHHH
Q 019448 158 AKYFYIAGFFLTVSPDSIQLVAEHAAANNKV-FMMNLSAPFICEFFKDALEKVLPYMDYIF--GNETEAR 224 (341)
Q Consensus 158 ~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~-v~~d~~~~~~~~~~~~~~~~~l~~~dvl~--~n~~E~~ 224 (341)
.|+++++. +.+...++...+.+.|.+ +++|.++.. ++-+.+-++. +|.+++.
T Consensus 66 ~Divf~a~-----~~~~s~~~~~~~~~aG~~~~VID~Ss~f----------R~~~dvplvvPEvN~e~i~ 120 (369)
T PRK06598 66 LDIIITCQ-----GGDYTNEVYPKLRAAGWQGYWIDAASTL----------RMKDDAIIILDPVNRDVID 120 (369)
T ss_pred CCEEEECC-----CHHHHHHHHHHHHhCCCCeEEEECChHH----------hCCCCCcEEcCCcCHHHHH
Confidence 89988853 677888888888889985 788998653 3344555555 4555544
No 114
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=51.57 E-value=79 Score=26.15 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=44.3
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHH--------HHHHHHh-hcCCCcEEecCHHHHHH
Q 019448 157 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEF--------FKDALEK-VLPYMDYIFGNETEART 225 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~--------~~~~~~~-~l~~~dvl~~n~~E~~~ 225 (341)
+.|++++-+.. ....+..+.+..+..|.++++|+.+..|... +...-+. ...++|.++....+.+.
T Consensus 92 ~~~ii~ilg~~---~g~~~~~~~r~~~~~g~~v~vN~DGlEWkR~KW~~~~k~~lk~~E~~avk~ad~lIaDs~~I~~ 166 (185)
T PF09314_consen 92 KYDIILILGYG---IGPFFLPFLRKLRKKGGKVVVNMDGLEWKRAKWGRPAKKYLKFSEKLAVKYADRLIADSKGIQD 166 (185)
T ss_pred cCCEEEEEcCC---ccHHHHHHHHhhhhcCCcEEECCCcchhhhhhcCHHHHHHHHHHHHHHHHhCCEEEEcCHHHHH
Confidence 35688887643 3556778888888899999999988777643 1111222 23678998886665544
No 115
>PRK09028 cystathionine beta-lyase; Provisional
Probab=51.26 E-value=1.4e+02 Score=27.99 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=28.4
Q ss_pred ccceEEEEecccc-ccCHHHHHHHHHHHHhCCCeEEEeCC
Q 019448 156 EKAKYFYIAGFFL-TVSPDSIQLVAEHAAANNKVFMMNLS 194 (341)
Q Consensus 156 ~~~~~v~i~~~~~-~~~~~~~~~~~~~a~~~~~~v~~d~~ 194 (341)
++.++++++..+. ......+..+++.|+++|+.+++|-.
T Consensus 145 ~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t 184 (394)
T PRK09028 145 PNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNT 184 (394)
T ss_pred cCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECC
Confidence 3577888875442 23356688899999999999888864
No 116
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=50.60 E-value=53 Score=23.98 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=36.8
Q ss_pred hccceEEEEeccccccC-HHHHHHHHHHHHhCC---CeEEEeCCchhHHHHHHHHHHhhcCCCcEEe
Q 019448 155 VEKAKYFYIAGFFLTVS-PDSIQLVAEHAAANN---KVFMMNLSAPFICEFFKDALEKVLPYMDYIF 217 (341)
Q Consensus 155 l~~~~~v~i~~~~~~~~-~~~~~~~~~~a~~~~---~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~ 217 (341)
.+++|++++..++...+ .+.+...+..+++.+ .++++--. +.+...+.+.+..+.+|+++
T Consensus 34 ~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC---~aq~~~~~l~~~~p~vd~v~ 97 (98)
T PF00919_consen 34 PEEADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTGC---MAQRYGEELKKEFPEVDLVV 97 (98)
T ss_pred cccCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEeC---ccccChHHHHhhCCCeEEEe
Confidence 47899999998875333 334555555555544 44544432 12234566788888899875
No 117
>COG1159 Era GTPase [General function prediction only]
Probab=48.42 E-value=1.2e+02 Score=27.15 Aligned_cols=109 Identities=6% Similarity=0.011 Sum_probs=56.1
Q ss_pred CCcEEEEeeeecCchhHH-HHHHHHhcCcceeeeecCCCCceeEEEEEe-CCccceeecccccccCCcccCCC---cchh
Q 019448 78 PGATSYIGCIGKDKFGEE-MKKNSKLAGVNVHYYEDESASTGTCAVCVV-GGERSLVANLSAANCYKSEHLKK---PENW 152 (341)
Q Consensus 78 g~~v~~i~~vG~D~~g~~-i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~---~~~~ 152 (341)
+.++.|++.+|+-..|+. +.+.|-...| +.+......|+..+.-+. .++..++...-+.-+-....+.. ...+
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~ 80 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAAR 80 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence 478899999999888886 6666654444 334333344555544443 44444433322111111222222 2345
Q ss_pred hhhccceEEEEeccccccCHHHHHHHHHHHHhCCCe
Q 019448 153 ALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKV 188 (341)
Q Consensus 153 ~~l~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~ 188 (341)
..+.+.|++.+--.........-..+++..+....|
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~p 116 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTP 116 (298)
T ss_pred HHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCC
Confidence 678899988875433221122334444444554334
No 118
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=47.83 E-value=33 Score=29.45 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=30.0
Q ss_pred ccceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEe
Q 019448 156 EKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIF 217 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~ 217 (341)
...|.+.++|+..+...+.+..++++. ..+|+++.|++.. .+.+++|.++
T Consensus 31 ~gtDai~VGGS~~~~~~d~vv~~ik~~--~~lPvilfPg~~~----------~vs~~aDail 80 (230)
T PF01884_consen 31 SGTDAIIVGGSDTGVTLDNVVALIKRV--TDLPVILFPGSPS----------QVSPGADAIL 80 (230)
T ss_dssp TT-SEEEEE-STHCHHHHHHHHHHHHH--SSS-EEEETSTCC----------G--TTSSEEE
T ss_pred cCCCEEEECCCCCccchHHHHHHHHhc--CCCCEEEeCCChh----------hcCcCCCEEE
Confidence 778999999965122334444444433 7789999998754 5667888776
No 119
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=47.61 E-value=87 Score=27.80 Aligned_cols=56 Identities=18% Similarity=0.141 Sum_probs=38.2
Q ss_pred eEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEec
Q 019448 159 KYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFG 218 (341)
Q Consensus 159 ~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~ 218 (341)
..|.++|--+.+.++.+.++++.+++.|..+.++-.+... .+.+.++++..|++.+
T Consensus 127 ~~V~~sGGEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~~----~~~~~~ll~~~d~~~i 182 (295)
T TIGR02494 127 GGVTLSGGEPLLQPEFALALLQACHERGIHTAVETSGFTP----WETIEKVLPYVDLFLF 182 (295)
T ss_pred CcEEeeCcchhchHHHHHHHHHHHHHcCCcEeeeCCCCCC----HHHHHHHHhhCCEEEE
Confidence 4567777445556788889999999999888887765432 2335566666776543
No 120
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=45.93 E-value=1.9e+02 Score=26.90 Aligned_cols=54 Identities=6% Similarity=0.043 Sum_probs=38.5
Q ss_pred hhccceEEEEeccccccCHHHHHHHHHHHHhCCCe-EEEeCCchhHHHHHHHHHHhhcCCCcEEe--cCHHH
Q 019448 154 LVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKV-FMMNLSAPFICEFFKDALEKVLPYMDYIF--GNETE 222 (341)
Q Consensus 154 ~l~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~-v~~d~~~~~~~~~~~~~~~~~l~~~dvl~--~n~~E 222 (341)
.+.+.|+++++. +.+...++...+.+.|.+ +++|-++.. ++-+.+.++. +|.+.
T Consensus 61 ~~~~vDivffa~-----g~~~s~~~~p~~~~aG~~~~VIDnSSa~----------Rmd~dVPLVVPeVN~~~ 117 (366)
T TIGR01745 61 ALKALDIIITCQ-----GGDYTNEIYPKLRESGWQGYWIDAASSL----------RMKDDAVIILDPVNQDV 117 (366)
T ss_pred cccCCCEEEEcC-----CHHHHHHHHHHHHhCCCCeEEEECChhh----------hcCCCCCEEeCCcCHHH
Confidence 467789999864 567888899999999975 778887643 3455566666 45543
No 121
>PHA00438 hypothetical protein
Probab=45.32 E-value=17 Score=25.02 Aligned_cols=18 Identities=39% Similarity=0.717 Sum_probs=15.2
Q ss_pred CCCCchhhHHHHHHHHhc
Q 019448 291 TNGAGDAFVGGFLSQLVQ 308 (341)
Q Consensus 291 ~tGAGDaf~ag~~~~l~~ 308 (341)
-.|.-++|+|||++|+-.
T Consensus 46 ~~G~SE~~IaGfl~Gl~y 63 (81)
T PHA00438 46 QAGYSEAFIAGFLAGLQY 63 (81)
T ss_pred HcCCcHHHHHHHHHHHHH
Confidence 368899999999999843
No 122
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=44.07 E-value=1.6e+02 Score=27.85 Aligned_cols=117 Identities=14% Similarity=0.131 Sum_probs=63.6
Q ss_pred eeecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEeCCccce-eecccccccCCcccCCCcchhhhhccceEEEEe
Q 019448 86 CIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSL-VANLSAANCYKSEHLKKPENWALVEKAKYFYIA 164 (341)
Q Consensus 86 ~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~i~ 164 (341)
.+|....|+.+...|.+.|+..-.+. +. +-+|.. +. ..+..+.+...+....+.++|+|+.+
T Consensus 183 vIGAGem~~lva~~L~~~g~~~i~Ia--NR----------T~erA~~La-----~~~~~~~~~l~el~~~l~~~DvViss 245 (414)
T COG0373 183 VIGAGEMGELVAKHLAEKGVKKITIA--NR----------TLERAEELA-----KKLGAEAVALEELLEALAEADVVISS 245 (414)
T ss_pred EEcccHHHHHHHHHHHhCCCCEEEEE--cC----------CHHHHHHHH-----HHhCCeeecHHHHHHhhhhCCEEEEe
Confidence 34555788889999988887443321 11 112211 00 11112222222334678999999987
Q ss_pred ccc--cccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhh
Q 019448 165 GFF--LTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSK 228 (341)
Q Consensus 165 ~~~--~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~ 228 (341)
... +.++.+.+...++.-+. .+.+|++.|. +.-...-+.-++...+-++++.+..
T Consensus 246 Tsa~~~ii~~~~ve~a~~~r~~---~livDiavPR------die~~v~~l~~v~l~~iDDL~~iv~ 302 (414)
T COG0373 246 TSAPHPIITREMVERALKIRKR---LLIVDIAVPR------DVEPEVGELPNVFLYTIDDLEEIVE 302 (414)
T ss_pred cCCCccccCHHHHHHHHhcccC---eEEEEecCCC------CCCccccCcCCeEEEehhhHHHHHH
Confidence 443 23455555555432222 7889998765 1112333345677777777777643
No 123
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=43.72 E-value=1.6e+02 Score=27.52 Aligned_cols=103 Identities=15% Similarity=0.139 Sum_probs=56.7
Q ss_pred CchHHHHHHHHHHHhcCCCcEEEEeeeecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEeCCccceeeccccccc
Q 019448 61 GGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANC 140 (341)
Q Consensus 61 GG~a~n~a~~l~~l~~lg~~v~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~ 140 (341)
.|++.--|...+ +.+.|.+|..+. +..||+...+.++..|.++..+..+-+ ..
T Consensus 64 sGt~amEAav~s-l~~pgdkVLv~~---nG~FG~R~~~ia~~~g~~v~~~~~~wg-----------------------~~ 116 (383)
T COG0075 64 SGTLAMEAAVAS-LVEPGDKVLVVV---NGKFGERFAEIAERYGAEVVVLEVEWG-----------------------EA 116 (383)
T ss_pred CcHHHHHHHHHh-ccCCCCeEEEEe---CChHHHHHHHHHHHhCCceEEEeCCCC-----------------------CC
Confidence 344444344444 565566665553 337999999999999999887654321 12
Q ss_pred CCcccCCCcchhhhhccceE---EEEeccccccCHHHHHHHHHHHHhCCCeEEEeCC
Q 019448 141 YKSEHLKKPENWALVEKAKY---FYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLS 194 (341)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~---v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~ 194 (341)
++++.+.. ..+.-.+.+. +|.+-++-. ..-+..+.+.+++++..+++|--
T Consensus 117 v~p~~v~~--~L~~~~~~~~V~~vH~ETSTGv--lnpl~~I~~~~k~~g~l~iVDaV 169 (383)
T COG0075 117 VDPEEVEE--ALDKDPDIKAVAVVHNETSTGV--LNPLKEIAKAAKEHGALLIVDAV 169 (383)
T ss_pred CCHHHHHH--HHhcCCCccEEEEEeccCcccc--cCcHHHHHHHHHHcCCEEEEEec
Confidence 33333332 0010112323 333322211 12366777778888998888873
No 124
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=42.67 E-value=58 Score=27.98 Aligned_cols=54 Identities=9% Similarity=0.150 Sum_probs=37.6
Q ss_pred ccceEEEEeccccccCHHHHHHHHHHHHhCCCe--EEEeCCchhHHHHHHHHHHhhcCCCcEEec
Q 019448 156 EKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKV--FMMNLSAPFICEFFKDALEKVLPYMDYIFG 218 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~--v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~ 218 (341)
..+|++.+.. +........+++..|++|.+ +.++|..+. +.+..+++.+|++.+
T Consensus 81 aGad~it~H~---Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~------~~l~~~l~~vD~VLv 136 (229)
T PRK09722 81 AGADFITLHP---ETINGQAFRLIDEIRRAGMKVGLVLNPETPV------ESIKYYIHLLDKITV 136 (229)
T ss_pred cCCCEEEECc---cCCcchHHHHHHHHHHcCCCEEEEeCCCCCH------HHHHHHHHhcCEEEE
Confidence 3578777743 32223456788889999987 788887653 557788888887774
No 125
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=42.44 E-value=2.7e+02 Score=25.37 Aligned_cols=90 Identities=6% Similarity=-0.001 Sum_probs=53.4
Q ss_pred CcEEEEeeeecCchhHHHHHHHHhcCcceeeeecC--C-CCceeEEEEEeCCccceeecccccccCCcccCCCcchhhhh
Q 019448 79 GATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDE--S-ASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWALV 155 (341)
Q Consensus 79 ~~v~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~--~-~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l 155 (341)
.++.+ |+.| ..|+.+++.|++.+.....++.- . ...+..+ ..+|+ .+.-+.+.. ..+
T Consensus 4 ~~iAi-GATg--~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i--~f~g~-----------~~~V~~l~~----~~f 63 (322)
T PRK06901 4 LNIAI-AAEF--ELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGI--RFNNK-----------AVEQIAPEE----VEW 63 (322)
T ss_pred ceEEE-ecCc--HHHHHHHHHHHhcCCchhheeecccccccCCCEE--EECCE-----------EEEEEECCc----cCc
Confidence 34555 6665 58999999999998877643311 1 1122211 11222 222223332 345
Q ss_pred ccceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCc
Q 019448 156 EKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSA 195 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~ 195 (341)
++.|++++ + ..+...++...+.+.|..++ |-++
T Consensus 64 ~~vDia~f-a-----g~~~s~~~ap~a~~aG~~VI-DnSs 96 (322)
T PRK06901 64 ADFNYVFF-A-----GKMAQAEHLAQAAEAGCIVI-DLYG 96 (322)
T ss_pred ccCCEEEE-c-----CHHHHHHHHHHHHHCCCEEE-ECCh
Confidence 67899888 4 36678888888889988764 4443
No 126
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=40.16 E-value=2.3e+02 Score=24.05 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=32.7
Q ss_pred ccceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCch
Q 019448 156 EKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAP 196 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~ 196 (341)
..+||+.+.+. .+.+++...++.|++.|..+.+|.-+.
T Consensus 79 aGAd~~tV~g~---A~~~TI~~~i~~A~~~~~~v~iDl~~~ 116 (217)
T COG0269 79 AGADWVTVLGA---ADDATIKKAIKVAKEYGKEVQIDLIGV 116 (217)
T ss_pred cCCCEEEEEec---CCHHHHHHHHHHHHHcCCeEEEEeecC
Confidence 57899999884 378999999999999999999998654
No 127
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=40.06 E-value=31 Score=28.50 Aligned_cols=42 Identities=31% Similarity=0.519 Sum_probs=35.1
Q ss_pred CCCCchhhHHHHHHHHh-cCCCHHHHHHHHHHHhhhhhhhccc
Q 019448 291 TNGAGDAFVGGFLSQLV-QEKPIEECVRAGCYTSHVIIQRSGC 332 (341)
Q Consensus 291 ~tGAGDaf~ag~~~~l~-~g~~~~~a~~~a~~~Aa~~v~~~g~ 332 (341)
--|.|-+|+=||+-.-. .|+++|||.+|-..+-++++.+-|.
T Consensus 146 IgGSGStfIYGf~D~~~r~nMt~EE~~~fvk~Av~lAi~rDGs 188 (224)
T KOG0174|consen 146 IGGSGSTFIYGFCDANWRPNMTLEECVRFVKNAVSLAIERDGS 188 (224)
T ss_pred eccCCceeeeeeehhhcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 34899998888876554 4899999999999999999988776
No 128
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=40.00 E-value=50 Score=20.43 Aligned_cols=30 Identities=10% Similarity=-0.026 Sum_probs=21.9
Q ss_pred ecCHHHHHHHhhhcCCCCCCHHHHHHHHhcCCccccCCccE
Q 019448 217 FGNETEARTFSKVQGWETDDVEEIALKLSQWPKASEIRKRT 257 (341)
Q Consensus 217 ~~n~~E~~~l~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~ 257 (341)
+++.+|+..|++. .-+...++.| ...|++.
T Consensus 2 fLT~~El~elTG~-----k~~~~Q~~~L------~~~Gi~~ 31 (47)
T PF13986_consen 2 FLTDEELQELTGY-----KRPSKQIRWL------RRNGIPF 31 (47)
T ss_pred CCCHHHHHHHHCC-----CCHHHHHHHH------HHCCCee
Confidence 5789999999984 4566777777 4556553
No 129
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=39.00 E-value=64 Score=28.12 Aligned_cols=30 Identities=27% Similarity=0.257 Sum_probs=20.8
Q ss_pred CCHHHHHHHHhcCCccccCCccEEEEEeCCCceEEE
Q 019448 235 DDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVA 270 (341)
Q Consensus 235 ~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~ 270 (341)
.+.+++++.+ .+.+.+.|++|.|.+....+
T Consensus 116 ~~~~eA~~~l------~~~~~~~iflttGsk~L~~f 145 (249)
T PF02571_consen 116 DSYEEAAELL------KELGGGRIFLTTGSKNLPPF 145 (249)
T ss_pred CCHHHHHHHH------hhcCCCCEEEeCchhhHHHH
Confidence 4677777777 34455779999998875433
No 130
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=38.75 E-value=1.4e+02 Score=23.66 Aligned_cols=57 Identities=9% Similarity=-0.020 Sum_probs=41.8
Q ss_pred eEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHH
Q 019448 159 KYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETE 222 (341)
Q Consensus 159 ~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E 222 (341)
+.|.++|-- ...+.+..+++.+++.|.++.++-.... .+..++++++.|+++...-+
T Consensus 63 ~gVt~SGGE--l~~~~l~~ll~~lk~~Gl~i~l~Tg~~~-----~~~~~~il~~iD~l~~g~y~ 119 (147)
T TIGR02826 63 SCVLFLGGE--WNREALLSLLKIFKEKGLKTCLYTGLEP-----KDIPLELVQHLDYLKTGRWI 119 (147)
T ss_pred CEEEEechh--cCHHHHHHHHHHHHHCCCCEEEECCCCC-----HHHHHHHHHhCCEEEEChHH
Confidence 567777744 5667888999999999998888765322 23356778999999987643
No 131
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=38.72 E-value=98 Score=21.09 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=25.7
Q ss_pred HhcCCCcEEEEeeeec------CchhHHHHHHHHhcCcceee
Q 019448 74 MLQIPGATSYIGCIGK------DKFGEEMKKNSKLAGVNVHY 109 (341)
Q Consensus 74 l~~lg~~v~~i~~vG~------D~~g~~i~~~l~~~gi~~~~ 109 (341)
|..+|.++.++..-.. ....+.+.+.|++.||+...
T Consensus 18 l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 18 LAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp HHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred HHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 4456799999865432 13567788899999998864
No 132
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=38.55 E-value=3e+02 Score=25.48 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=23.0
Q ss_pred cceEEEEecccc-ccCHHHHHHHHHHHHhCCCeEEEeCC
Q 019448 157 KAKYFYIAGFFL-TVSPDSIQLVAEHAAANNKVFMMNLS 194 (341)
Q Consensus 157 ~~~~v~i~~~~~-~~~~~~~~~~~~~a~~~~~~v~~d~~ 194 (341)
+.++++++.... ......+..+.+.++++++.+++|-.
T Consensus 139 ~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a 177 (380)
T TIGR01325 139 NTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNV 177 (380)
T ss_pred CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECC
Confidence 356777654321 11122356677777888888888875
No 133
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=37.99 E-value=1.6e+02 Score=25.07 Aligned_cols=130 Identities=18% Similarity=0.076 Sum_probs=64.4
Q ss_pred eecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhhhhccceEEEEecc
Q 019448 87 IGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGF 166 (341)
Q Consensus 87 vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~i~~~ 166 (341)
+|++-....+.+.|++.+.+.........+....... .......... .......... ....+.+.+++.|.
T Consensus 2 ~GD~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~vii~GG 72 (286)
T PF04230_consen 2 IGDDLILEALLKLLKKHGPDAEIIIFSPDPDEFSKYY---KNKSIFNIDL--SKLWRKRRRK----SKIKNADDVIIGGG 72 (286)
T ss_pred chHHHHHHHHHHHHHhcCCceEEEEeCCChHHHHHHh---cccccchhhh--hhhhhhhhcc----cccccCCeEEEECC
Confidence 5777778889999999987776654322111110000 0000000000 0000000000 00145566666664
Q ss_pred c----cccCHH---HHHHHHHHHHhCCCeEEEeCCc--hhHHHHHHHHHHhhcCCCcEEecCHHHHHH
Q 019448 167 F----LTVSPD---SIQLVAEHAAANNKVFMMNLSA--PFICEFFKDALEKVLPYMDYIFGNETEART 225 (341)
Q Consensus 167 ~----~~~~~~---~~~~~~~~a~~~~~~v~~d~~~--~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~ 225 (341)
. ...... ........++..+.|+++-..+ +.........++.++++++++.+-++....
T Consensus 73 g~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~g~g~gp~~~~~~~~~~~~~l~~~~~i~vRD~~S~~ 140 (286)
T PF04230_consen 73 GGSDNNFIDLWSLPIFLRWLFLAKKLGKPVIILGQGIGPFRSEEFKKLLRRILSKADYISVRDEYSYE 140 (286)
T ss_pred cccccCCCcchhhHHHHHHHHHHHhcCCCeEEECceECccCCHHHHHHHHHHHhCCCEEEECCHHHHH
Confidence 1 111111 2355666777888875544432 223344666788899999998887666544
No 134
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=37.89 E-value=1.5e+02 Score=25.12 Aligned_cols=59 Identities=12% Similarity=0.090 Sum_probs=37.4
Q ss_pred eEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecC
Q 019448 159 KYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGN 219 (341)
Q Consensus 159 ~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n 219 (341)
+.|.++|--+.+.++.+..+++.+++.+.++.+.-.+... . ..+.+.++++..|.+.++
T Consensus 67 ~~I~~~GGEPll~~~~~~~li~~~~~~g~~~~i~TNG~~~-~-~~~~~~~ll~~~d~v~is 125 (235)
T TIGR02493 67 GGVTFSGGEPLLQPEFLSELFKACKELGIHTCLDTSGFLG-G-CTEAADELLEYTDLVLLD 125 (235)
T ss_pred CeEEEeCcccccCHHHHHHHHHHHHHCCCCEEEEcCCCCC-c-cHHHHHHHHHhCCEEEEe
Confidence 4677776445567788889999999999887776654221 0 022344555566766553
No 135
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=37.73 E-value=3.4e+02 Score=25.26 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=22.0
Q ss_pred cceEEEEecccc-ccCHHHHHHHHHHHHhCCCeEEEeCC
Q 019448 157 KAKYFYIAGFFL-TVSPDSIQLVAEHAAANNKVFMMNLS 194 (341)
Q Consensus 157 ~~~~v~i~~~~~-~~~~~~~~~~~~~a~~~~~~v~~d~~ 194 (341)
+.++|+++..+. ......+.++.+.|+++++++++|-.
T Consensus 146 ~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t 184 (390)
T PRK08133 146 NTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNC 184 (390)
T ss_pred CCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECC
Confidence 456666653321 11112356777778888888777774
No 136
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=37.14 E-value=26 Score=24.08 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=16.3
Q ss_pred cCCCCCchhhHHHHHHHHhc
Q 019448 289 VDTNGAGDAFVGGFLSQLVQ 308 (341)
Q Consensus 289 vd~tGAGDaf~ag~~~~l~~ 308 (341)
....|+-++|++||+.|+..
T Consensus 44 lr~~G~SE~~I~Gfl~Gl~~ 63 (77)
T PF10911_consen 44 LRKQGWSESYILGFLAGLQY 63 (77)
T ss_pred HHHccccHHHHHHHHHHHHH
Confidence 34459999999999999854
No 137
>PRK07050 cystathionine beta-lyase; Provisional
Probab=36.53 E-value=3.6e+02 Score=25.18 Aligned_cols=38 Identities=11% Similarity=0.169 Sum_probs=27.1
Q ss_pred cceEEEEeccc-cccCHHHHHHHHHHHHhCCCeEEEeCC
Q 019448 157 KAKYFYIAGFF-LTVSPDSIQLVAEHAAANNKVFMMNLS 194 (341)
Q Consensus 157 ~~~~v~i~~~~-~~~~~~~~~~~~~~a~~~~~~v~~d~~ 194 (341)
+.++|+++... +..+...+..+.+.|+++++.+++|-.
T Consensus 150 ~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a 188 (394)
T PRK07050 150 NTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNT 188 (394)
T ss_pred CCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECC
Confidence 45677776433 233566788888889999998888875
No 138
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=35.09 E-value=1e+02 Score=26.35 Aligned_cols=50 Identities=18% Similarity=0.103 Sum_probs=33.7
Q ss_pred ccceEEEEeccccccCHHHHHHHHHHHHhC--CCeEEEeCCchhHHHHHHHHHHhhcCCCcEEe
Q 019448 156 EKAKYFYIAGFFLTVSPDSIQLVAEHAAAN--NKVFMMNLSAPFICEFFKDALEKVLPYMDYIF 217 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~--~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~ 217 (341)
...|.+.++|+. ... +.+.+.++..++. .+|+++.|++.. ...+++|.++
T Consensus 24 ~gtdai~vGGS~-~v~-~~~~~~~~~ik~~~~~~Pvilfp~~~~----------~i~~~aDa~l 75 (219)
T cd02812 24 SGTDAIMVGGSD-GVS-STLDNVVRLIKRIRRPVPVILFPSNPE----------AVSPGADAYL 75 (219)
T ss_pred cCCCEEEECCcc-chh-hhHHHHHHHHHHhcCCCCEEEeCCCcc----------ccCcCCCEEE
Confidence 457999999865 333 4455444444443 489999998753 5678888877
No 139
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=35.09 E-value=1.4e+02 Score=25.87 Aligned_cols=65 Identities=14% Similarity=0.188 Sum_probs=39.4
Q ss_pred hhhhhccceEEEEecccc---------cc------CHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcE
Q 019448 151 NWALVEKAKYFYIAGFFL---------TV------SPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDY 215 (341)
Q Consensus 151 ~~~~l~~~~~v~i~~~~~---------~~------~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dv 215 (341)
+...+.++|+++.+|... .. ..+.+..+++.+.+++.++++=-+.+...+...+.+++-. ..++
T Consensus 55 ~~~~l~~ad~i~~DG~gvv~~~~~~~~~~~~~Rv~G~dl~~~ll~~~~~~~~~v~llG~~~~v~~~a~~~l~~~y-~l~i 133 (243)
T PRK03692 55 LRELINAAEYKYADGISVVRSIRKKYPQAQVSRVAGADLWEALMARAGKEGTPVFLVGGKPEVLAQTEAKLRTQW-NVNI 133 (243)
T ss_pred HHHHHHhCCEEecCCHHHHHHHHHhcCCCCCCeeChHHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHHHh-CCEE
Confidence 446677888888887521 00 1356778888888888777666555554444444454444 4444
Q ss_pred E
Q 019448 216 I 216 (341)
Q Consensus 216 l 216 (341)
+
T Consensus 134 ~ 134 (243)
T PRK03692 134 V 134 (243)
T ss_pred E
Confidence 3
No 140
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=35.07 E-value=76 Score=25.20 Aligned_cols=59 Identities=12% Similarity=0.076 Sum_probs=36.0
Q ss_pred eEEEEeccccccCH--HHHHHHHHHHHhC-CCeEEEeCCchhHHHHHH-HHHHhhcCCCcEEe
Q 019448 159 KYFYIAGFFLTVSP--DSIQLVAEHAAAN-NKVFMMNLSAPFICEFFK-DALEKVLPYMDYIF 217 (341)
Q Consensus 159 ~~v~i~~~~~~~~~--~~~~~~~~~a~~~-~~~v~~d~~~~~~~~~~~-~~~~~~l~~~dvl~ 217 (341)
..|.++|--+...+ +.+.++++.+++. +....++..+..+.+... ...+++++++|+++
T Consensus 65 ~gVt~sGGEPllq~~~~~l~~ll~~~k~~~~~~~~~~~tG~~~~~~~~~~~~~~~l~~~D~li 127 (154)
T TIGR02491 65 DGLTLSGGDPLYPRNVEELIELVKKIKAEFPEKDIWLWTGYTWEEILEDEKHLEVLKYIDVLV 127 (154)
T ss_pred CeEEEeChhhCCCCCHHHHHHHHHHHHHhCCCCCEEEeeCccHHHHhcchhHHHHHhhCCEEE
Confidence 45677764444433 7899999999976 555555565544322211 11246889999765
No 141
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=34.86 E-value=1.8e+02 Score=28.02 Aligned_cols=96 Identities=15% Similarity=0.172 Sum_probs=54.5
Q ss_pred hcCCCcEEEEeeeecCchhHHHHHHHHh-cCcceeeeecCCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhh
Q 019448 75 LQIPGATSYIGCIGKDKFGEEMKKNSKL-AGVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWA 153 (341)
Q Consensus 75 ~~lg~~v~~i~~vG~D~~g~~i~~~l~~-~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (341)
+|+|.++.|+|-+== +.+.+.|++ .+++. + ...+|-.+.+..++|+...+.+++..+ ++..+.
T Consensus 339 LGfGfRcGFLGlLHm----eiiqERLeREf~ldl--I--~TaPsV~Y~v~~~~g~~~~i~NPs~~P--~~~~I~------ 402 (603)
T COG0481 339 LGFGFRCGFLGLLHM----EIIQERLEREFDLDL--I--TTAPSVVYKVELTDGEEIEVDNPSDLP--DPNKIE------ 402 (603)
T ss_pred ccCceeehhhhHHHH----HHHHHHHHHhhCcce--E--ecCCceEEEEEEcCCcEEEecChHhCC--Chhhhh------
Confidence 467899999998743 456666764 44444 3 234566676666788877766543221 112222
Q ss_pred hhccceEEEEeccccccCHHHHHHHHHHHHh-CCCeEE
Q 019448 154 LVEKAKYFYIAGFFLTVSPDSIQLVAEHAAA-NNKVFM 190 (341)
Q Consensus 154 ~l~~~~~v~i~~~~~~~~~~~~~~~~~~a~~-~~~~v~ 190 (341)
.+.++ ++-.. ...|.+.+-.+++.|.+ +|....
T Consensus 403 ~i~EP-~v~~~---ii~P~eylG~vm~Lcq~kRG~~~~ 436 (603)
T COG0481 403 EIEEP-YVKAT---IITPQEYLGNVMELCQEKRGIQID 436 (603)
T ss_pred eeeCc-eeEEE---EeCcHHHHHHHHHHHHHhcCceec
Confidence 23322 33332 23467788888887775 444433
No 142
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=34.06 E-value=1.6e+02 Score=25.54 Aligned_cols=48 Identities=13% Similarity=-0.065 Sum_probs=29.7
Q ss_pred ccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHH
Q 019448 169 TVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETE 222 (341)
Q Consensus 169 ~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E 222 (341)
.++.+...++.+.|++.|+.+...|-+.. ..+.+.++ +++.+++---|
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~----s~d~l~~~--~~~~~KIaS~d 99 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEE----SVDFLEEL--GVPAYKIASGD 99 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHH----HHHHHHHH--T-SEEEE-GGG
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHH----HHHHHHHc--CCCEEEecccc
Confidence 46789999999999999999888875432 23333333 57888864333
No 143
>PRK13663 hypothetical protein; Provisional
Probab=33.35 E-value=2.1e+02 Score=27.01 Aligned_cols=117 Identities=13% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEeCCchhHHHH-------------HHHHHHhhcCCCcEEe-cCHHHHH--HHhhhcCCC-C
Q 019448 172 PDSIQLVAEHAAANNKVFMMNLSAPFICEF-------------FKDALEKVLPYMDYIF-GNETEAR--TFSKVQGWE-T 234 (341)
Q Consensus 172 ~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~-------------~~~~~~~~l~~~dvl~-~n~~E~~--~l~~~~~~~-~ 234 (341)
.....++.++..+.+-++++++++..+.+- ....+.++-..+.+++ +|..+.+ .+-+..+.+ +
T Consensus 12 ~~Qs~~I~eRi~~f~~KLYLEFGGKLfdD~HAsRVLPGF~pdsKi~mL~~lkD~~EIvi~I~A~DIe~nKiRgDlGItYd 91 (493)
T PRK13663 12 ELQSDHILERINQFDGKLYLEFGGKLFDDYHASRVLPGFEPDNKIKLLQELKDQVEIVIAINANDIERNKIRGDLGITYD 91 (493)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecccccccccHhhcCCCCCcCHHHHHHHHhhccceEEEEEEhhhhhhccccccCCCchh
Q ss_pred CCHHHHHHHHhcCCccccCCccEEEEEe--------------CCCceEEEECCeeEEEeceecCCCcccCCCCCc
Q 019448 235 DDVEEIALKLSQWPKASEIRKRTAVITQ--------------GADPVVVAQDGKLKKFPVIVLPKDKLVDTNGAG 295 (341)
Q Consensus 235 ~d~~~~~~~l~~~~~~~~~~~~~vvvt~--------------G~~G~~~~~~~~~~~~~~~~~~~~~~vd~tGAG 295 (341)
.|.-.+.+.++. ++.-+..||||+ ...|.-+|. .+.++.+|.....+|+.-|=|
T Consensus 92 ~dVLRLiD~fr~----~gl~V~sVVITqy~~qp~a~~F~~rLe~~GIkvy~---Hy~i~GYP~dv~~IVSdeGyG 159 (493)
T PRK13663 92 QDVLRLIDDFRE----LGLYVGSVVITQYDGQPAADAFRNRLERLGIKVYR---HYPIKGYPTDVDHIVSDEGYG 159 (493)
T ss_pred HHHHHHHHHHHh----cCceeeeEEEEecCCChHHHHHHHHHHHCCCceEE---ecCcCCCCCCCCceECcCCCC
No 144
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=33.11 E-value=89 Score=26.73 Aligned_cols=53 Identities=17% Similarity=0.262 Sum_probs=37.5
Q ss_pred ccceEEEEeccccccCHHHHHHHHHHHHhCCCe--EEEeCCchhHHHHHHHHHHhhcCCCcEEec
Q 019448 156 EKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKV--FMMNLSAPFICEFFKDALEKVLPYMDYIFG 218 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~--v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~ 218 (341)
.++|++.+.. +. .....+.++..|++|.+ +.++|..+. +.+..+++.+|++.+
T Consensus 84 ~gad~I~~H~---Ea-~~~~~~~l~~Ir~~g~k~GlalnP~T~~------~~i~~~l~~vD~Vlv 138 (223)
T PRK08745 84 AGATTISFHP---EA-SRHVHRTIQLIKSHGCQAGLVLNPATPV------DILDWVLPELDLVLV 138 (223)
T ss_pred hCCCEEEEcc---cC-cccHHHHHHHHHHCCCceeEEeCCCCCH------HHHHHHHhhcCEEEE
Confidence 4577777743 22 23466788888999987 888887654 557788889987774
No 145
>PRK08114 cystathionine beta-lyase; Provisional
Probab=32.90 E-value=2.4e+02 Score=26.50 Aligned_cols=52 Identities=10% Similarity=0.152 Sum_probs=31.1
Q ss_pred CceEecCchHHHHHHHHHHHhcCCCcEEEEeeeecCchhHH---HHHHHHhcCcceeeee
Q 019448 55 NVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEE---MKKNSKLAGVNVHYYE 111 (341)
Q Consensus 55 ~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i~~vG~D~~g~~---i~~~l~~~gi~~~~~~ 111 (341)
.....+.|.++..+..++ +++.|.++. ++ ++.+|.. +.+.+++.||++.++.
T Consensus 79 ~a~~~~SGmaAi~~~~~~-ll~~GD~Vv-~~---~~~Yg~t~~l~~~~l~~~Gi~v~~vd 133 (395)
T PRK08114 79 GCALYPCGAAAVANAILA-FVEQGDHVL-MT---GTAYEPTQDFCSKILSKLGVTTTWFD 133 (395)
T ss_pred eEEEEhHHHHHHHHHHHH-HcCCCCEEE-Ee---CCCcHHHHHHHHHHHHhcCcEEEEEC
Confidence 445567788888777666 456565543 32 3344433 3355777888876653
No 146
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=32.89 E-value=2.1e+02 Score=26.78 Aligned_cols=44 Identities=11% Similarity=0.035 Sum_probs=28.7
Q ss_pred hhhccceEEEEeccccccCHHHHHHHHHHHHhCCCe-EEEeCCch
Q 019448 153 ALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKV-FMMNLSAP 196 (341)
Q Consensus 153 ~~l~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~-v~~d~~~~ 196 (341)
..++++|++++=|..+..........+..++++|.+ +.+||+..
T Consensus 148 ~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~g~k~i~idp~~~ 192 (414)
T cd02772 148 AEISELDRVLVIGSNLRKEHPLLAQRLRQAVKKGAKLSAINPADD 192 (414)
T ss_pred HHHHhCCEEEEECCCccccchHHHHHHHHHHHcCCEEEEEeCccc
Confidence 457889998887765432223345556677778866 66798654
No 147
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=32.83 E-value=4e+02 Score=24.57 Aligned_cols=94 Identities=11% Similarity=0.148 Sum_probs=53.5
Q ss_pred CCcEEEEeeeecCchhHHHHHHHHh-cCcceeeee--cCCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhhh
Q 019448 78 PGATSYIGCIGKDKFGEEMKKNSKL-AGVNVHYYE--DESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWAL 154 (341)
Q Consensus 78 g~~v~~i~~vG~D~~g~~i~~~l~~-~gi~~~~~~--~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (341)
+.++.++|+-| .-|+.+.+.|++ ..++...+. ......+..+.+ .+. .+..+.++. ..
T Consensus 5 ~~~VaIvGATG--~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~--~~~-----------~l~v~~~~~----~~ 65 (347)
T PRK06728 5 GYHVAVVGATG--AVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQF--KGR-----------EIIIQEAKI----NS 65 (347)
T ss_pred CCEEEEEeCCC--HHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeee--CCc-----------ceEEEeCCH----HH
Confidence 36788888876 689999999984 666633221 111122222111 111 111122221 23
Q ss_pred hccceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCch
Q 019448 155 VEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAP 196 (341)
Q Consensus 155 l~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~ 196 (341)
+.+.|++++. .+.+...++...+.+.|.++ +|.++.
T Consensus 66 ~~~~Divf~a-----~~~~~s~~~~~~~~~~G~~V-ID~Ss~ 101 (347)
T PRK06728 66 FEGVDIAFFS-----AGGEVSRQFVNQAVSSGAIV-IDNTSE 101 (347)
T ss_pred hcCCCEEEEC-----CChHHHHHHHHHHHHCCCEE-EECchh
Confidence 5678988885 36677888888888888644 677654
No 148
>PRK06444 prephenate dehydrogenase; Provisional
Probab=32.43 E-value=2.1e+02 Score=23.87 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=19.3
Q ss_pred EEEEeeeecCchhHHHHHHHHhcCccee
Q 019448 81 TSYIGCIGKDKFGEEMKKNSKLAGVNVH 108 (341)
Q Consensus 81 v~~i~~vG~D~~g~~i~~~l~~~gi~~~ 108 (341)
+.+||.- ...|+++.+.|++.|..+.
T Consensus 3 ~~iiG~~--G~mG~~~~~~~~~~g~~v~ 28 (197)
T PRK06444 3 EIIIGKN--GRLGRVLCSILDDNGLGVY 28 (197)
T ss_pred EEEEecC--CcHHHHHHHHHHhCCCEEE
Confidence 4455533 5799999999999997763
No 149
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=32.38 E-value=46 Score=33.48 Aligned_cols=45 Identities=7% Similarity=-0.099 Sum_probs=27.4
Q ss_pred hhhccceEEEEeccccccCHHHHHHHHHHHHhC-CCe-EEEeCCchh
Q 019448 153 ALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAAN-NKV-FMMNLSAPF 197 (341)
Q Consensus 153 ~~l~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~-~~~-v~~d~~~~~ 197 (341)
..++++|++++-|..+...-......+..++++ |.+ +++||+...
T Consensus 165 ~Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~ 211 (649)
T cd02752 165 NDIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTR 211 (649)
T ss_pred HHHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCc
Confidence 347889999998765422212233444556655 754 889997543
No 150
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=32.03 E-value=1.4e+02 Score=27.84 Aligned_cols=102 Identities=15% Similarity=0.208 Sum_probs=54.3
Q ss_pred CceEecCchHHHHHHHHHHHhcCCCcEEEEeeeecCchhHH---HHHHHHhcCcceeeeecCCCCceeEEEEEeCCccce
Q 019448 55 NVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEE---MKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSL 131 (341)
Q Consensus 55 ~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i~~vG~D~~g~~---i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~ 131 (341)
.....+.|.++-.+..++ +++.|.++.... +.||.. +.+.+.+.||.+.++...+
T Consensus 72 ~a~~~~SGmaAi~~~l~~-ll~~Gd~iv~~~----~~Y~~t~~~~~~~l~~~gv~v~~~d~~d----------------- 129 (386)
T PF01053_consen 72 DALLFSSGMAAISAALLA-LLKPGDHIVASD----DLYGGTYRLLEELLPRFGVEVTFVDPTD----------------- 129 (386)
T ss_dssp EEEEESSHHHHHHHHHHH-HS-TTBEEEEES----SSSHHHHHHHHHCHHHTTSEEEEESTTS-----------------
T ss_pred ceeeccchHHHHHHHHHh-hcccCCceEecC----CccCcchhhhhhhhcccCcEEEEeCchh-----------------
Confidence 344566777776665555 456565544332 234432 4445666777665542100
Q ss_pred eecccccccCCcccCCCcchhhhh-ccceEEEEecccc-ccCHHHHHHHHHHHHhCC-CeEEEeCC
Q 019448 132 VANLSAANCYKSEHLKKPENWALV-EKAKYFYIAGFFL-TVSPDSIQLVAEHAAANN-KVFMMNLS 194 (341)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~v~i~~~~~-~~~~~~~~~~~~~a~~~~-~~v~~d~~ 194 (341)
.+.+. ..+ ++.++|++...+. .....-+..+.+.|+++| +++++|-.
T Consensus 130 -----------~~~l~-----~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT 179 (386)
T PF01053_consen 130 -----------LEALE-----AALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNT 179 (386)
T ss_dssp -----------HHHHH-----HHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECT
T ss_pred -----------HHHHH-----hhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeecc
Confidence 11111 112 2677888876542 223345788888899998 88888874
No 151
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=32.00 E-value=2.2e+02 Score=21.46 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=36.7
Q ss_pred hhhccceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEe
Q 019448 153 ALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIF 217 (341)
Q Consensus 153 ~~l~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~ 217 (341)
..+.++|+++ +. ..++.+...++.+.++++++++=-.. |.+...+.++++.+..-++.
T Consensus 63 ~~~~~~DVvI-Df----T~p~~~~~~~~~~~~~g~~~ViGTTG--~~~~~~~~l~~~a~~~~vl~ 120 (124)
T PF01113_consen 63 ELLEEADVVI-DF----TNPDAVYDNLEYALKHGVPLVIGTTG--FSDEQIDELEELAKKIPVLI 120 (124)
T ss_dssp HHTTH-SEEE-EE----S-HHHHHHHHHHHHHHT-EEEEE-SS--SHHHHHHHHHHHTTTSEEEE
T ss_pred HhcccCCEEE-Ec----CChHHhHHHHHHHHhCCCCEEEECCC--CCHHHHHHHHHHhccCCEEE
Confidence 4566688554 32 15888889999999999997765544 44444455777777776665
No 152
>COG4803 Predicted membrane protein [Function unknown]
Probab=31.96 E-value=58 Score=25.75 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=24.0
Q ss_pred cccCCCCCchhhHHHHHHHHhcC---CCHHHHHHHHHHHhhhh
Q 019448 287 KLVDTNGAGDAFVGGFLSQLVQE---KPIEECVRAGCYTSHVI 326 (341)
Q Consensus 287 ~~vd~tGAGDaf~ag~~~~l~~g---~~~~~a~~~a~~~Aa~~ 326 (341)
+.++.||+|-.- |-++|++-| +.+.--+..+++.+|+.
T Consensus 53 Q~~Nlt~aGa~s--GafWG~LiGllFl~Pl~G~avGAa~GAl~ 93 (170)
T COG4803 53 QLMNLTGAGAVS--GAFWGMLIGLLFLNPLLGMAVGAASGALS 93 (170)
T ss_pred HHhhhhhhcccc--ccHHHHHHHHHHHhHHHHHHHHHhhhhhc
Confidence 778999999754 555666555 34555566666655553
No 153
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=31.80 E-value=2.8e+02 Score=22.41 Aligned_cols=122 Identities=12% Similarity=0.067 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCcceeeee---cCCCCceeEEEEEe--CCccceeeccccc-------ccCCcccCC---Ccchhhhhccc
Q 019448 94 EEMKKNSKLAGVNVHYYE---DESASTGTCAVCVV--GGERSLVANLSAA-------NCYKSEHLK---KPENWALVEKA 158 (341)
Q Consensus 94 ~~i~~~l~~~gi~~~~~~---~~~~~t~~~~~~~~--~g~~~~~~~~~~~-------~~~~~~~~~---~~~~~~~l~~~ 158 (341)
..+.+.|++.|+.+.+.. .........+.+++ +|++..+...... ..+..+.+. .+.....+.++
T Consensus 17 ~k~i~~l~~~~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~e~fe~~~~~~L~~~~~~~ 96 (168)
T PF03266_consen 17 KKVIEELKKKGLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDLESFEEIGLPALRNALSSS 96 (168)
T ss_dssp HHHHHHHHHTCGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-HHHHHCCCCCCCHHHHHCC
T ss_pred HHHHHHhhccCCccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcHHHHHHHHHHHHHhhcCCC
Confidence 345566666688877542 12233444444544 6666554433200 011212211 12223345789
Q ss_pred eEEEEeccc-cccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCC--CcEEecC
Q 019448 159 KYFYIAGFF-LTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPY--MDYIFGN 219 (341)
Q Consensus 159 ~~v~i~~~~-~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~--~dvl~~n 219 (341)
|+++++-.. ++.......+.+..+-+.+.++...+.... ..+.++++..+ +.++.++
T Consensus 97 ~liviDEIG~mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~----~~~~l~~i~~~~~~~i~~vt 156 (168)
T PF03266_consen 97 DLIVIDEIGKMELKSPGFREAVEKLLDSNKPVIGVVHKRS----DNPFLEEIKRRPDVKIFEVT 156 (168)
T ss_dssp HEEEE---STTCCC-CHHHHHHHHHHCTTSEEEEE--SS------SCCHHHHHTTTTSEEEE--
T ss_pred CEEEEeccchhhhcCHHHHHHHHHHHcCCCcEEEEEecCC----CcHHHHHHHhCCCcEEEEeC
Confidence 999999776 344444444444444456677777665441 11124455544 5555554
No 154
>PLN02409 serine--glyoxylate aminotransaminase
Probab=31.60 E-value=4.3e+02 Score=24.63 Aligned_cols=48 Identities=13% Similarity=0.057 Sum_probs=25.5
Q ss_pred cCchHHHHHHHHHHHhcCCCcEEEEeeeecCchhHHHHHHHHhcCcceeeee
Q 019448 60 AGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYE 111 (341)
Q Consensus 60 ~GG~a~n~a~~l~~l~~lg~~v~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~ 111 (341)
.+|.+.+.+.... +++.|.++.+. .. +.++....+.++..|+++..+.
T Consensus 67 ~~gt~a~~~a~~~-~~~~Gd~Vlv~-~~--~~~~~~~~~~~~~~g~~v~~v~ 114 (401)
T PLN02409 67 TTGTGAWESALTN-TLSPGDKVVSF-RI--GQFSLLWIDQMQRLNFDVDVVE 114 (401)
T ss_pred CCcHHHHHHHHHh-cCCCCCEEEEe-CC--CchhHHHHHHHHHcCCceEEEE
Confidence 3555555444333 45545554433 33 3455555566777777766554
No 155
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=30.91 E-value=3.3e+02 Score=23.05 Aligned_cols=66 Identities=14% Similarity=0.046 Sum_probs=42.1
Q ss_pred hccceEEEEeccccccCHHHHHHHHH-HHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEe-cCHHHHHHHhhh
Q 019448 155 VEKAKYFYIAGFFLTVSPDSIQLVAE-HAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIF-GNETEARTFSKV 229 (341)
Q Consensus 155 l~~~~~v~i~~~~~~~~~~~~~~~~~-~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~-~n~~E~~~l~~~ 229 (341)
...+|+.+-++ .-|...+..+.. ..++.+.+|.+..+++. .+.++.-.++|+|+ .|++-+..+...
T Consensus 18 ~~~adinlYGp---GGPhtaL~~vA~~~~ektg~kVnvt~GPq~------tW~~kAkknADilfgaseqsalaia~~ 85 (252)
T COG4588 18 AANADINLYGP---GGPHTALKDVAKKYEEKTGIKVNVTAGPQA------TWNEKAKKNADILFGASEQSALAIAED 85 (252)
T ss_pred hhcceEEEecC---CCCcHHHHHHHHHHHHHhCeEEEEecCCcc------hhhhhhhccCceeecccHHHHHHHHHh
Confidence 34556655543 334445555554 45567888888887653 33567778999999 677777766554
No 156
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=30.89 E-value=3.3e+02 Score=23.04 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=23.7
Q ss_pred ecCchHHHHHHHHHHHhcCCCcEEEEeeeecCchhHHHHHHHHhcCcc
Q 019448 59 IAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVN 106 (341)
Q Consensus 59 ~~GG~a~n~a~~l~~l~~lg~~v~~i~~vG~D~~g~~i~~~l~~~gi~ 106 (341)
.=.|+|+++|+.+. +. .+|.-+=.+. ...+.-++.|+..|+.
T Consensus 79 IGtGsGY~aAvla~-l~---~~V~siEr~~--~L~~~A~~~L~~lg~~ 120 (209)
T COG2518 79 IGTGSGYQAAVLAR-LV---GRVVSIERIE--ELAEQARRNLETLGYE 120 (209)
T ss_pred ECCCchHHHHHHHH-Hh---CeEEEEEEcH--HHHHHHHHHHHHcCCC
Confidence 33577777766554 43 3444333322 4566667778777773
No 157
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=30.70 E-value=58 Score=23.92 Aligned_cols=31 Identities=26% Similarity=0.245 Sum_probs=26.6
Q ss_pred cCCCCCchhhHHHHHHHHhcC-CCHHHHHHHH
Q 019448 289 VDTNGAGDAFVGGFLSQLVQE-KPIEECVRAG 319 (341)
Q Consensus 289 vd~tGAGDaf~ag~~~~l~~g-~~~~~a~~~a 319 (341)
.|-.|-||..-|-+.++|+.| .+.+||++.=
T Consensus 53 ~dkh~kGd~aEA~iAyAWLeg~it~eEaveil 84 (120)
T PF11469_consen 53 TDKHGKGDIAEALIAYAWLEGKITIEEAVEIL 84 (120)
T ss_dssp GGCCGHHHHHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred ccccCccHHHHHHHHHHHHhccccHHHHHHHH
Confidence 688899999999999999998 4899988764
No 158
>PRK08005 epimerase; Validated
Probab=30.66 E-value=1e+02 Score=26.09 Aligned_cols=52 Identities=10% Similarity=0.140 Sum_probs=36.2
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhCCCe--EEEeCCchhHHHHHHHHHHhhcCCCcEEec
Q 019448 157 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNKV--FMMNLSAPFICEFFKDALEKVLPYMDYIFG 218 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~--v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~ 218 (341)
.+|++.+.. +. .+...++++..|++|.+ +.++|..+. +.++.+++.+|.+.+
T Consensus 81 gad~It~H~---Ea-~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~------~~i~~~l~~vD~Vlv 134 (210)
T PRK08005 81 RPGWIFIHA---ES-VQNPSEILADIRAIGAKAGLALNPATPL------LPYRYLALQLDALMI 134 (210)
T ss_pred CCCEEEEcc---cC-ccCHHHHHHHHHHcCCcEEEEECCCCCH------HHHHHHHHhcCEEEE
Confidence 567777643 21 23456788888999987 788887654 456778888887774
No 159
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=30.27 E-value=3.1e+02 Score=25.58 Aligned_cols=106 Identities=12% Similarity=0.168 Sum_probs=56.8
Q ss_pred HhcCCCcEEEEeeeecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhh
Q 019448 74 MLQIPGATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWA 153 (341)
Q Consensus 74 l~~lg~~v~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (341)
+.+.|.++.--+.+=...+ ..+...|++.||++.++...+. +.+.. .
T Consensus 97 la~aGD~iVss~~LYGGT~-~lf~~tl~~~Gi~v~fvd~~d~----------------------------~~~~~----a 143 (426)
T COG2873 97 LAGAGDNIVSSSKLYGGTY-NLFSHTLKRLGIEVRFVDPDDP----------------------------ENFEA----A 143 (426)
T ss_pred hccCCCeeEeeccccCchH-HHHHHHHHhcCcEEEEeCCCCH----------------------------HHHHH----H
Confidence 4456777766655433333 3456667888888877643221 11110 1
Q ss_pred hhccceEEEEecccc-ccCHHHHHHHHHHHHhCCCeEEEeCC--chhHHHHHHHHHHhhcCCCcEEecC
Q 019448 154 LVEKAKYFYIAGFFL-TVSPDSIQLVAEHAAANNKVFMMNLS--APFICEFFKDALEKVLPYMDYIFGN 219 (341)
Q Consensus 154 ~l~~~~~v~i~~~~~-~~~~~~~~~~~~~a~~~~~~v~~d~~--~~~~~~~~~~~~~~~l~~~dvl~~n 219 (341)
.=++.++|++..+.. ....--+..+.+.|+++|+++++|-. .++ .++.+-..+|++.=|
T Consensus 144 I~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpy-------l~rP~~hGADIVvHS 205 (426)
T COG2873 144 IDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPY-------LCRPIEHGADIVVHS 205 (426)
T ss_pred hCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCcce-------ecchhhcCCCEEEEe
Confidence 113445555554431 11222356777778999999888763 222 133344457887754
No 160
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=30.01 E-value=1.2e+02 Score=20.07 Aligned_cols=24 Identities=21% Similarity=0.072 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHH
Q 019448 296 DAFVGGFLSQLVQEKPIEECVRAGC 320 (341)
Q Consensus 296 Daf~ag~~~~l~~g~~~~~a~~~a~ 320 (341)
|+|.+++.+++. +.+..+.+..+.
T Consensus 4 Daf~vg~~~g~~-~~~~~~~~~~~~ 27 (67)
T PF02659_consen 4 DAFAVGISYGLR-GISRRIILLIAL 27 (67)
T ss_pred HHHHHHHHHHHH-cCChHHHHHHHH
Confidence 999999999998 444444444443
No 161
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=29.75 E-value=2.3e+02 Score=23.50 Aligned_cols=58 Identities=16% Similarity=0.065 Sum_probs=37.6
Q ss_pred ccceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcC-CCcEEecC
Q 019448 156 EKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLP-YMDYIFGN 219 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~-~~dvl~~n 219 (341)
..+|++.+.+. .+...+.++++.++++|+++.++...+.. ..+..+.+.+ .+|++.++
T Consensus 75 ~Gad~i~vh~~---~~~~~~~~~i~~~~~~g~~~~~~~~~~~t---~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 75 AGADIVTVLGV---ADDATIKGAVKAAKKHGKEVQVDLINVKD---KVKRAKELKELGADYIGVH 133 (206)
T ss_pred cCCCEEEEecc---CCHHHHHHHHHHHHHcCCEEEEEecCCCC---hHHHHHHHHHcCCCEEEEc
Confidence 46788887653 24456788999999999998877432211 1122344444 78999874
No 162
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=29.20 E-value=3.1e+02 Score=25.79 Aligned_cols=102 Identities=14% Similarity=0.116 Sum_probs=56.6
Q ss_pred CCceEecCchHHHHHHHHHHHhcCCCcEEEEeeeecCchh---HHHHHHHHhcCcceeeeecCCCCceeEEEEEeCCccc
Q 019448 54 YNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFG---EEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERS 130 (341)
Q Consensus 54 ~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i~~vG~D~~g---~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~ 130 (341)
......+.|.++-.+..++ +++.|..+..... .|| +.+...+++.||++.++.......
T Consensus 79 ~~~~afsSGmaAI~~~~l~-ll~~GD~vl~~~~----~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~------------- 140 (396)
T COG0626 79 EDAFAFSSGMAAISTALLA-LLKAGDHVLLPDD----LYGGTYRLFEKILQKFGVEVTFVDPGDDEA------------- 140 (396)
T ss_pred CcEEEecCcHHHHHHHHHH-hcCCCCEEEecCC----ccchHHHHHHHHHHhcCeEEEEECCCChHH-------------
Confidence 3455677787777776666 4565666655433 233 345556677777776543211100
Q ss_pred eeecccccccCCcccCCCcchhhhh--ccceEEEEecccc-ccCHHHHHHHHHHHHhCCCeEEEeC
Q 019448 131 LVANLSAANCYKSEHLKKPENWALV--EKAKYFYIAGFFL-TVSPDSIQLVAEHAAANNKVFMMNL 193 (341)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~v~i~~~~~-~~~~~~~~~~~~~a~~~~~~v~~d~ 193 (341)
.+..+ .+.++|+++.-+. .+.-.-+..+.+.|+++|..+++|-
T Consensus 141 --------------------~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDN 186 (396)
T COG0626 141 --------------------LEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDN 186 (396)
T ss_pred --------------------HHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEEC
Confidence 01112 2567777765432 1122346777777888887766665
No 163
>PRK05939 hypothetical protein; Provisional
Probab=29.17 E-value=4.8e+02 Score=24.39 Aligned_cols=38 Identities=0% Similarity=0.121 Sum_probs=25.9
Q ss_pred cceEEEEecccc-ccCHHHHHHHHHHHHhCCCeEEEeCC
Q 019448 157 KAKYFYIAGFFL-TVSPDSIQLVAEHAAANNKVFMMNLS 194 (341)
Q Consensus 157 ~~~~v~i~~~~~-~~~~~~~~~~~~~a~~~~~~v~~d~~ 194 (341)
+.++|+++..+. .....-+..+.+.|+++++.+++|-.
T Consensus 131 ~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t 169 (397)
T PRK05939 131 NTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNT 169 (397)
T ss_pred CCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECC
Confidence 466777764331 12234577888889999999888875
No 164
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=28.67 E-value=2.1e+02 Score=29.39 Aligned_cols=47 Identities=15% Similarity=0.062 Sum_probs=30.5
Q ss_pred hhhccceEEEEeccccccCHHHHHHHHHHHHh-CCCe-EEEeCCchhHH
Q 019448 153 ALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAA-NNKV-FMMNLSAPFIC 199 (341)
Q Consensus 153 ~~l~~~~~v~i~~~~~~~~~~~~~~~~~~a~~-~~~~-v~~d~~~~~~~ 199 (341)
+.++.+|++++-|......-..+...+++|.+ +|.+ +++|++...+.
T Consensus 416 ~dve~ad~vliIG~N~te~HPV~asr~kra~k~~G~KliV~D~R~~ema 464 (978)
T COG3383 416 EDVEGADLVLIIGANPTEGHPVLASRLKRAHKLRGQKLIVIDPRKHEMA 464 (978)
T ss_pred HHHhhCCeEEEEcCCCCccCccHHHHHHHHHHhcCCeEEEeccchhHHH
Confidence 34778888888876544444456666666665 7765 77888755443
No 165
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=28.65 E-value=1.2e+02 Score=25.93 Aligned_cols=53 Identities=13% Similarity=0.197 Sum_probs=37.2
Q ss_pred ccceEEEEeccccccCHHHHHHHHHHHHhCCCe--EEEeCCchhHHHHHHHHHHhhcCCCcEEec
Q 019448 156 EKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKV--FMMNLSAPFICEFFKDALEKVLPYMDYIFG 218 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~--v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~ 218 (341)
.++|++.+.. + ..+.+.++++..|+.|.+ +.++|..+. +.+..+++.+|.+.+
T Consensus 80 ~gad~i~~H~---E-a~~~~~~~l~~ik~~g~k~GlalnP~Tp~------~~i~~~l~~~D~vlv 134 (220)
T PRK08883 80 AGASMITFHV---E-ASEHVDRTLQLIKEHGCQAGVVLNPATPL------HHLEYIMDKVDLILL 134 (220)
T ss_pred hCCCEEEEcc---c-CcccHHHHHHHHHHcCCcEEEEeCCCCCH------HHHHHHHHhCCeEEE
Confidence 3567777743 2 123467788888999977 788887654 557788888887774
No 166
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=28.47 E-value=4.7e+02 Score=24.02 Aligned_cols=94 Identities=16% Similarity=0.203 Sum_probs=52.6
Q ss_pred CCcEEEEeeeecCchhHHHHHHHHhcCcce---eeeecCCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhhh
Q 019448 78 PGATSYIGCIGKDKFGEEMKKNSKLAGVNV---HYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWAL 154 (341)
Q Consensus 78 g~~v~~i~~vG~D~~g~~i~~~l~~~gi~~---~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (341)
+.++.++|.-| .-|..+.+.|.+.+-.. .++. .....+..+.. .+ . .+..+.+.. ..
T Consensus 7 ~~kVaVvGAtG--~vG~eLlrlL~~~~hP~~~l~~la-s~rsaGk~~~~--~~-~----------~~~v~~~~~----~~ 66 (344)
T PLN02383 7 GPSVAIVGVTG--AVGQEFLSVLTDRDFPYSSLKMLA-SARSAGKKVTF--EG-R----------DYTVEELTE----DS 66 (344)
T ss_pred CCeEEEEcCCC--hHHHHHHHHHHhCCCCcceEEEEE-ccCCCCCeeee--cC-c----------eeEEEeCCH----HH
Confidence 46788888877 57999999998744322 2221 11111221111 11 1 111222221 33
Q ss_pred hccceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchh
Q 019448 155 VEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPF 197 (341)
Q Consensus 155 l~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~ 197 (341)
+.+.|++++. .+.+...++...+.+.|++ ++|.++..
T Consensus 67 ~~~~D~vf~a-----~p~~~s~~~~~~~~~~g~~-VIDlS~~f 103 (344)
T PLN02383 67 FDGVDIALFS-----AGGSISKKFGPIAVDKGAV-VVDNSSAF 103 (344)
T ss_pred HcCCCEEEEC-----CCcHHHHHHHHHHHhCCCE-EEECCchh
Confidence 5678998875 3566778888878777765 47777643
No 167
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.20 E-value=1.6e+02 Score=21.17 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=29.9
Q ss_pred hhhccceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeC
Q 019448 153 ALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNL 193 (341)
Q Consensus 153 ~~l~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~ 193 (341)
..+.++|+|++-- -.++-+....+-+.|++.++|+++--
T Consensus 44 ~~i~~aD~VIv~t--~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 44 SKIKKADLVIVFT--DYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HhcCCCCEEEEEe--CCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 4578899988742 23567788888899999999977765
No 168
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=27.71 E-value=1.9e+02 Score=25.55 Aligned_cols=65 Identities=9% Similarity=0.239 Sum_probs=32.2
Q ss_pred hhhccceEEEEeccccccCHHHHHHHHHHHHh-----CCCeEEEeCCchhHHHHHHHHHHhhcCC----CcEEecCHH
Q 019448 153 ALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAA-----NNKVFMMNLSAPFICEFFKDALEKVLPY----MDYIFGNET 221 (341)
Q Consensus 153 ~~l~~~~~v~i~~~~~~~~~~~~~~~~~~a~~-----~~~~v~~d~~~~~~~~~~~~~~~~~l~~----~dvl~~n~~ 221 (341)
..+++..+++++ ++|++.+.++++.+.. ..+-+.+|.++........+.+.++-++ .+++++..+
T Consensus 19 ~~lEDlGyycvD----NLPp~Llp~~~~~~~~~~~~~~kvAv~iDiRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~ 92 (286)
T COG1660 19 RVLEDLGYYCVD----NLPPQLLPKLADLMLTLESRITKVAVVIDVRSREFFGDLEEVLDELKDNGDIDPRVLFLEAD 92 (286)
T ss_pred HHHHhcCeeeec----CCCHHHHHHHHHHHhhcccCCceEEEEEecccchhHHHHHHHHHHHHhcCCCCceEEEEECc
Confidence 345566666665 4566666666553321 1233666776654333333333333322 566665433
No 169
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=27.62 E-value=4.8e+02 Score=23.88 Aligned_cols=93 Identities=13% Similarity=0.091 Sum_probs=52.0
Q ss_pred CcEEEEeeeecCchhHHHHHHHHhcCcceeeee--cCCCCceeEEEEEeCCccceeecccccccCC-cccCCCcchhhhh
Q 019448 79 GATSYIGCIGKDKFGEEMKKNSKLAGVNVHYYE--DESASTGTCAVCVVGGERSLVANLSAANCYK-SEHLKKPENWALV 155 (341)
Q Consensus 79 ~~v~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~--~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~l 155 (341)
.++.++|.-| .-|+.+.+.|++......... -+...- |.+.. ...+. .+. ++.... ...+
T Consensus 2 ~~VavvGATG--~VG~~~~~~L~e~~f~~~~~~~~AS~rSa---------G~~~~-~f~~~--~~~v~~~~~~---~~~~ 64 (334)
T COG0136 2 LNVAVLGATG--AVGQVLLELLEERHFPFEELVLLASARSA---------GKKYI-EFGGK--SIGVPEDAAD---EFVF 64 (334)
T ss_pred cEEEEEeccc--hHHHHHHHHHHhcCCCcceEEEEeccccc---------CCccc-cccCc--cccCcccccc---cccc
Confidence 5688888877 589999999998655443221 111111 22211 00000 011 111111 1335
Q ss_pred ccceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeC
Q 019448 156 EKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNL 193 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~ 193 (341)
++.|+++++. +.+...++...+.+.|+.++=+-
T Consensus 65 ~~~Divf~~a-----g~~~s~~~~p~~~~~G~~VIdns 97 (334)
T COG0136 65 SDVDIVFFAA-----GGSVSKEVEPKAAEAGCVVIDNS 97 (334)
T ss_pred ccCCEEEEeC-----chHHHHHHHHHHHHcCCEEEeCC
Confidence 5889999864 55677888899999996654443
No 170
>PRK15447 putative protease; Provisional
Probab=27.22 E-value=3.5e+02 Score=24.26 Aligned_cols=72 Identities=13% Similarity=0.066 Sum_probs=43.8
Q ss_pred ccceEEEEecccc----ccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCC-CcEE-ecCHHHHHHHh
Q 019448 156 EKAKYFYIAGFFL----TVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPY-MDYI-FGNETEARTFS 227 (341)
Q Consensus 156 ~~~~~v~i~~~~~----~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~-~dvl-~~n~~E~~~l~ 227 (341)
..+|.||++.... +.+.+.+.++++.++++|.++++....-.......+.+.++++. .|.+ +-|-.++..+.
T Consensus 27 ~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v~d~g~l~~~~ 104 (301)
T PRK15447 27 SPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEANDLGAVRLLA 104 (301)
T ss_pred CCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEEeCHHHHHHHH
Confidence 3699999985432 35778999999999999999877542221111122234444443 4544 34666665554
No 171
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=27.01 E-value=71 Score=25.24 Aligned_cols=45 Identities=24% Similarity=0.251 Sum_probs=32.9
Q ss_pred hhhhhccceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchh
Q 019448 151 NWALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPF 197 (341)
Q Consensus 151 ~~~~l~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~ 197 (341)
....+..+|+++++|.++ -..++..+++.+++....+.+=|+.+.
T Consensus 56 ~~~~l~~aD~viiTGsTl--vN~Ti~~iL~~~~~~~~vil~GpS~~~ 100 (147)
T PF04016_consen 56 AEEILPWADVVIITGSTL--VNGTIDDILELARNAREVILYGPSAPL 100 (147)
T ss_dssp HHHHGGG-SEEEEECHHC--CTTTHHHHHHHTTTSSEEEEESCCGGS
T ss_pred HHHHHccCCEEEEEeeee--ecCCHHHHHHhCccCCeEEEEecCchh
Confidence 346789999999999874 236678888888865556778887765
No 172
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=26.97 E-value=5.2e+02 Score=24.08 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=23.9
Q ss_pred cceEEEEecccc-ccCHHHHHHHHHHHHhCCCeEEEeCC
Q 019448 157 KAKYFYIAGFFL-TVSPDSIQLVAEHAAANNKVFMMNLS 194 (341)
Q Consensus 157 ~~~~v~i~~~~~-~~~~~~~~~~~~~a~~~~~~v~~d~~ 194 (341)
+.++++++.... .....-+.++.+.++++++++++|-.
T Consensus 144 ~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a 182 (391)
T TIGR01328 144 NTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNT 182 (391)
T ss_pred CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECC
Confidence 456777764331 11122366777778888988888875
No 173
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=26.95 E-value=1.6e+02 Score=25.73 Aligned_cols=34 Identities=12% Similarity=0.199 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcCCCcEEEEeeeecCchhHHHHHHHH
Q 019448 66 NSIRVAQWMLQIPGATSYIGCIGKDKFGEEMKKNSK 101 (341)
Q Consensus 66 n~a~~l~~l~~lg~~v~~i~~vG~D~~g~~i~~~l~ 101 (341)
|.+..+..|..+|.++..++.||||. +.|.+.++
T Consensus 22 Na~~la~~L~~~G~~v~~~~~VgD~~--~~I~~~l~ 55 (255)
T COG1058 22 NAAFLADELTELGVDLARITTVGDNP--DRIVEALR 55 (255)
T ss_pred hHHHHHHHHHhcCceEEEEEecCCCH--HHHHHHHH
Confidence 44555555566789999999999984 23444444
No 174
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=26.91 E-value=96 Score=26.02 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=34.7
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhCCCe--EEEeCCchhHHHHHHHHHHhhcCCCcEEec
Q 019448 157 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNKV--FMMNLSAPFICEFFKDALEKVLPYMDYIFG 218 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~--v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~ 218 (341)
+++.+.+-. + ..+...++++..|++|.+ +.++|..+. +.+..+++.+|.+.+
T Consensus 80 g~~~i~~H~---E-~~~~~~~~i~~ik~~g~k~GialnP~T~~------~~~~~~l~~vD~Vlv 133 (201)
T PF00834_consen 80 GADYITFHA---E-ATEDPKETIKYIKEAGIKAGIALNPETPV------EELEPYLDQVDMVLV 133 (201)
T ss_dssp T-SEEEEEG---G-GTTTHHHHHHHHHHTTSEEEEEE-TTS-G------GGGTTTGCCSSEEEE
T ss_pred CCCEEEEcc---c-chhCHHHHHHHHHHhCCCEEEEEECCCCc------hHHHHHhhhcCEEEE
Confidence 457776643 2 234566788888999987 778887653 446788999998773
No 175
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=26.35 E-value=1.5e+02 Score=25.46 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=36.9
Q ss_pred ccceEEEEeccccccCHHHHHHHHHHHHhCCC--e--EEEeCCchhHHHHHHHHHHhhcCCCcEEec
Q 019448 156 EKAKYFYIAGFFLTVSPDSIQLVAEHAAANNK--V--FMMNLSAPFICEFFKDALEKVLPYMDYIFG 218 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~--~--v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~ 218 (341)
.++|++.+.. +. .....+.++..++.|. + +.++|..+. +.++.+++.+|++.+
T Consensus 90 aGad~It~H~---Ea-~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~------~~i~~~l~~vD~VLi 146 (228)
T PRK08091 90 AGADIVTLQV---EQ-THDLALTIEWLAKQKTTVLIGLCLCPETPI------SLLEPYLDQIDLIQI 146 (228)
T ss_pred hCCCEEEEcc---cC-cccHHHHHHHHHHCCCCceEEEEECCCCCH------HHHHHHHhhcCEEEE
Confidence 3577777743 22 2345677888899887 5 888887654 557788888887774
No 176
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=26.28 E-value=2e+02 Score=27.32 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=39.3
Q ss_pred hccceEEEEeccccccCHH-HHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecC
Q 019448 155 VEKAKYFYIAGFFLTVSPD-SIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGN 219 (341)
Q Consensus 155 l~~~~~v~i~~~~~~~~~~-~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n 219 (341)
.+.+|+++++.++.....+ ...++++.+++.+.++++-=... ...++.+.+.++.+|+++.+
T Consensus 34 ~~~aD~viinTC~v~~~a~~~~~~~i~~~~~~~~~vvvgGc~a---~~~pee~~~~~~~vd~v~g~ 96 (430)
T TIGR01125 34 YEDADYVIVNTCGFIEDARQESIDTIGELADAGKKVIVTGCLV---QRYKEELKEEIPEVHAITGS 96 (430)
T ss_pred cccCCEEEEeCCCccchHHHHHHHHHHHHHhcCCCEEEECCcc---ccchHHHHhhCCCCcEEECC
Confidence 4578999999776544433 36677788887787766543211 12344454557789988755
No 177
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=26.25 E-value=4.8e+02 Score=24.75 Aligned_cols=38 Identities=16% Similarity=0.081 Sum_probs=23.8
Q ss_pred cceEEEEecccc-ccCHHHHHHHHHHHHhCCCeEEEeCC
Q 019448 157 KAKYFYIAGFFL-TVSPDSIQLVAEHAAANNKVFMMNLS 194 (341)
Q Consensus 157 ~~~~v~i~~~~~-~~~~~~~~~~~~~a~~~~~~v~~d~~ 194 (341)
+.++|++..... ......+.++.+.++++++.+++|-.
T Consensus 149 ~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t 187 (431)
T PRK08248 149 KTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNT 187 (431)
T ss_pred CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCC
Confidence 457777763321 11112256777788889998888875
No 178
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=26.12 E-value=95 Score=28.44 Aligned_cols=88 Identities=11% Similarity=0.060 Sum_probs=44.0
Q ss_pred hhhccceEEEEeccccccCHHHHHHHHHHHHhCCCe-EEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcC
Q 019448 153 ALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKV-FMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQG 231 (341)
Q Consensus 153 ~~l~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~-v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~ 231 (341)
..++++|++++=|..+..+.......+..++++|.+ +++||+....... .+..-..-+..|..+...+.+..+++
T Consensus 152 ~d~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~~s~t~~~-ad~~i~i~pgtd~al~~a~~~~~i~g--- 227 (374)
T cd00368 152 ADIENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPRRTETAAK-ADEWLPIRPGTDAALALAEWAAEITG--- 227 (374)
T ss_pred HHHhhCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCCCCcchHh-hCEeeCCCCCcHHHHHhHHHHHHHHC---
Confidence 346789999987765322222244555566666765 7888875321110 01011122334444443344444443
Q ss_pred CCCCCHHHHHHHH
Q 019448 232 WETDDVEEIALKL 244 (341)
Q Consensus 232 ~~~~d~~~~~~~l 244 (341)
.+.+.++++++.+
T Consensus 228 ~~~~~i~~la~~~ 240 (374)
T cd00368 228 VPAETIRALAREF 240 (374)
T ss_pred CCHHHHHHHHHHH
Confidence 3334456666666
No 179
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=26.09 E-value=2.1e+02 Score=20.21 Aligned_cols=37 Identities=16% Similarity=0.061 Sum_probs=28.6
Q ss_pred ccceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCc
Q 019448 156 EKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSA 195 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~ 195 (341)
.....+++.. +.++..+.++...|.++++++.+-++.
T Consensus 28 g~~~~v~iA~---Da~~~vv~~l~~lceek~Ip~v~V~s~ 64 (84)
T PRK13600 28 DQVTSLIIAE---DVEVYLMTRVLSQINQKNIPVSFFKSK 64 (84)
T ss_pred CCceEEEEeC---CCCHHHHHHHHHHHHHcCCCEEEECCH
Confidence 3467788865 566778888889999999998877764
No 180
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=25.91 E-value=1.3e+02 Score=24.15 Aligned_cols=90 Identities=14% Similarity=0.065 Sum_probs=49.3
Q ss_pred CchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhhhhccceEEEEeccccc
Q 019448 90 DKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYIAGFFLT 169 (341)
Q Consensus 90 D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~i~~~~~~ 169 (341)
...|..+.+.|-+.|.++..+.+....... ..+-+.+.. +..+++ .....+.++|.++.......
T Consensus 8 G~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-----~~~~~~~~~-----d~~d~~-----~~~~al~~~d~vi~~~~~~~ 72 (183)
T PF13460_consen 8 GFVGRALAKQLLRRGHEVTALVRSPSKAED-----SPGVEIIQG-----DLFDPD-----SVKAALKGADAVIHAAGPPP 72 (183)
T ss_dssp SHHHHHHHHHHHHTTSEEEEEESSGGGHHH-----CTTEEEEES-----CTTCHH-----HHHHHHTTSSEEEECCHSTT
T ss_pred ChHHHHHHHHHHHCCCEEEEEecCchhccc-----cccccccee-----eehhhh-----hhhhhhhhcchhhhhhhhhc
Confidence 468888999998888766655332221111 001111100 011122 23357888999888653222
Q ss_pred cCHHHHHHHHHHHHhCCCeEEEeCC
Q 019448 170 VSPDSIQLVAEHAAANNKVFMMNLS 194 (341)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~v~~d~~ 194 (341)
...+....+++.+++.+++-++-.+
T Consensus 73 ~~~~~~~~~~~a~~~~~~~~~v~~s 97 (183)
T PF13460_consen 73 KDVDAAKNIIEAAKKAGVKRVVYLS 97 (183)
T ss_dssp THHHHHHHHHHHHHHTTSSEEEEEE
T ss_pred ccccccccccccccccccccceeee
Confidence 2256678888888888876444443
No 181
>PRK07582 cystathionine gamma-lyase; Validated
Probab=25.28 E-value=5.4e+02 Score=23.66 Aligned_cols=53 Identities=11% Similarity=0.058 Sum_probs=27.2
Q ss_pred CCceEecCchHHHHHHHHHHHhcCCCcEEEEeeeecCchhH---HHHHHHHhcCcceeeee
Q 019448 54 YNVEYIAGGATQNSIRVAQWMLQIPGATSYIGCIGKDKFGE---EMKKNSKLAGVNVHYYE 111 (341)
Q Consensus 54 ~~~~~~~GG~a~n~a~~l~~l~~lg~~v~~i~~vG~D~~g~---~i~~~l~~~gi~~~~~~ 111 (341)
...-...+|..++.+...+ +++.|.++... . +.++. .....++..|+++.++.
T Consensus 66 ~~~v~~~sG~~Ai~~~l~a-ll~~Gd~Vl~~-~---~~y~~~~~~~~~~l~~~G~~v~~v~ 121 (366)
T PRK07582 66 AEALVFPSGMAAITAVLRA-LLRPGDTVVVP-A---DGYYQVRALAREYLAPLGVTVREAP 121 (366)
T ss_pred CCEEEECCHHHHHHHHHHH-hcCCCCEEEEe-C---CCcHhHHHHHHHHHhcCeEEEEEEC
Confidence 3444556676665544444 45545444332 2 22322 23345667788777664
No 182
>PRK04296 thymidine kinase; Provisional
Probab=25.24 E-value=1.2e+02 Score=24.99 Aligned_cols=60 Identities=10% Similarity=-0.063 Sum_probs=37.2
Q ss_pred cceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEe
Q 019448 157 KAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIF 217 (341)
Q Consensus 157 ~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~ 217 (341)
+.|+|+++...+ ++.+.+.++++.+++.++.+++.-....+.........++++.+|.+.
T Consensus 78 ~~dvviIDEaq~-l~~~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~ 137 (190)
T PRK04296 78 KIDCVLIDEAQF-LDKEQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVT 137 (190)
T ss_pred CCCEEEEEcccc-CCHHHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEE
Confidence 578999997653 456667889999899998876654332111111112445666677665
No 183
>PF02515 CoA_transf_3: CoA-transferase family III; InterPro: IPR003673 CoA-transferases are found in organisms from all kingdoms of life. They catalyse reversible transfer reactions of coenzyme A groups from CoA-thioesters to free acids. There are at least three families of CoA-transferases, which differ in sequence and reaction mechanism: Family I consists of CoA-transferases for 3-oxoacids (2.8.3.5 from EC, 2.8.3.6 from EC), short-chain fatty acids (2.8.3.8 from EC, 2.8.3.9 from EC) and glutaconate (2.8.3.12 from EC). Most use succinyl-CoA or acetyl-CoA as CoA donors. Family II consists of the homodimeric alpha-subunits of citrate lyase and citramalate lyase (2.8.3.10 from EC, 2.8.3.11 from EC). These enzymes catalyse the transfer of acyl carrier protein (ACP) with a covalently bound CoA derivative, but can accept free CoA thioesters as well. Family III consists of formyl-CoA:oxalate CoA-transferase [], succinyl-CoA:(R)-benzylsuccinate CoA-transferase [], (E)-cinnamoyl-CoA:(R)-phenyllactate CoA-transferase [], and butyrobetainyl-CoA:(R)-carnitine CoA-transferase []. These CoA-transferases occur in prokaryotes and eukaryotes, and catalyse CoA-transfer reactions in a highly substrate- and stereo-specific manner []. This entry represents family III CoA-transferases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1PT7_B 1PT8_A 1PQY_A 1Q7E_A 1Q6Y_A 1PT5_A 1XK6_B 1XK7_C 1XVT_A 1XVU_A ....
Probab=24.78 E-value=1.4e+02 Score=24.63 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=22.2
Q ss_pred EEEeCCchhHHHHHHHHHHhhcCCCcEEecCHH
Q 019448 189 FMMNLSAPFICEFFKDALEKVLPYMDYIFGNET 221 (341)
Q Consensus 189 v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~ 221 (341)
|.+|+..+. .++.+.+++..+|+++-|..
T Consensus 1 V~lDl~~~~----gr~~l~~L~~~ADV~i~n~r 29 (191)
T PF02515_consen 1 VALDLKSPE----GRAALRRLLATADVVIENFR 29 (191)
T ss_dssp EEEETTSHH----HHHHHHHHHHT-SEEEEESS
T ss_pred CEeeCcCHH----HHHHHHHHHHhCCEEEECCc
Confidence 457887665 67889999999999997754
No 184
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=24.66 E-value=61 Score=26.36 Aligned_cols=69 Identities=13% Similarity=0.040 Sum_probs=36.2
Q ss_pred ccceEEEEeccccccCHHHHHHHHHH---HHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHH
Q 019448 156 EKAKYFYIAGFFLTVSPDSIQLVAEH---AAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEAR 224 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~---a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~ 224 (341)
++.|++++.......+...+...-.. .+-..+...+|+............+.+.+.++|++++|.-+.-
T Consensus 83 ~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~ADvIvlnK~D~~ 154 (178)
T PF02492_consen 83 ERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFADVIVLNKIDLV 154 (178)
T ss_dssp GC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-SEEEEE-GGGH
T ss_pred CCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcCEEEEeccccC
Confidence 36789998876643333331111111 1122244677885422122244557788999999999986643
No 185
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=24.53 E-value=4.5e+02 Score=22.94 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEec
Q 019448 172 PDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFG 218 (341)
Q Consensus 172 ~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~ 218 (341)
.+-+..+.+.+++.|+++.-++-... .++.+.+++|++++
T Consensus 65 ~~gl~~L~~~~~~~Gl~~~Tev~d~~-------~v~~~~e~vdilqI 104 (250)
T PRK13397 65 LQGIRYLHEVCQEFGLLSVSEIMSER-------QLEEAYDYLDVIQV 104 (250)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeCCHH-------HHHHHHhcCCEEEE
Confidence 45677888888899999988886543 24455567888885
No 186
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=24.32 E-value=3.3e+02 Score=24.06 Aligned_cols=73 Identities=8% Similarity=-0.095 Sum_probs=40.4
Q ss_pred ccceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCch--hH-HHHHHHHHHhhcCCCcEEecC-HHHHHHHhh
Q 019448 156 EKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAP--FI-CEFFKDALEKVLPYMDYIFGN-ETEARTFSK 228 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~--~~-~~~~~~~~~~~l~~~dvl~~n-~~E~~~l~~ 228 (341)
.+.|++++..+.....+.....+...++..+.++++..... .. ........+.+++.+|.+++. .+.++.+..
T Consensus 75 ~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~ 151 (366)
T cd03822 75 SGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMSSELLRALLL 151 (366)
T ss_pred cCCCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccccchhhhHHHHHHHhcCCEEEEeeHHHHHHHHh
Confidence 46789988653322223333344444456777766655442 10 111223345677888888866 777776654
No 187
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=23.94 E-value=4.2e+02 Score=25.19 Aligned_cols=38 Identities=11% Similarity=0.077 Sum_probs=25.4
Q ss_pred cceEEEEeccccc-cCHHHHHHHHHHHHhCCCeEEEeCC
Q 019448 157 KAKYFYIAGFFLT-VSPDSIQLVAEHAAANNKVFMMNLS 194 (341)
Q Consensus 157 ~~~~v~i~~~~~~-~~~~~~~~~~~~a~~~~~~v~~d~~ 194 (341)
+.++|++...+.. ....-+..+.+.++++|+++++|-.
T Consensus 149 ~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t 187 (433)
T PRK08134 149 NTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDST 187 (433)
T ss_pred CCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECC
Confidence 4677777654321 0113367788889999999999975
No 188
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=23.65 E-value=1.8e+02 Score=21.98 Aligned_cols=65 Identities=17% Similarity=0.131 Sum_probs=38.9
Q ss_pred ccceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHH
Q 019448 156 EKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEAR 224 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~ 224 (341)
.++|++.++.++. +......+++.+|+.+....+-.++.... ..++.+ ...+.+|+++..+-|..
T Consensus 38 ~~pdiv~~S~~~~--~~~~~~~~~~~ik~~~p~~~iv~GG~~~t-~~p~~~-~~~~~~D~vv~GEgE~~ 102 (127)
T cd02068 38 LKPDVVGISLMTS--AIYEALELAKIAKEVLPNVIVVVGGPHAT-FFPEEI-LEEPGVDFVVIGEGEET 102 (127)
T ss_pred cCCCEEEEeeccc--cHHHHHHHHHHHHHHCCCCEEEECCcchh-hCHHHH-hcCCCCCEEEECCcHHH
Confidence 5889999987543 33467778888888764333333333221 122222 23467999999877643
No 189
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=23.58 E-value=6.5e+02 Score=23.98 Aligned_cols=37 Identities=24% Similarity=0.218 Sum_probs=23.7
Q ss_pred ceEEEEeccccc-cCHHHHHHHHHHHHhCCCeEEEeCC
Q 019448 158 AKYFYIAGFFLT-VSPDSIQLVAEHAAANNKVFMMNLS 194 (341)
Q Consensus 158 ~~~v~i~~~~~~-~~~~~~~~~~~~a~~~~~~v~~d~~ 194 (341)
.+++++...... ....-+..+.+.|+++|+++++|-.
T Consensus 156 tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t 193 (437)
T PRK05613 156 TKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNT 193 (437)
T ss_pred CeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECC
Confidence 456666543311 1123367777788899999999986
No 190
>PRK04148 hypothetical protein; Provisional
Probab=22.92 E-value=3.7e+02 Score=20.93 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=29.7
Q ss_pred hhhccceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeC
Q 019448 153 ALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNL 193 (341)
Q Consensus 153 ~~l~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~ 193 (341)
+..+++|++|-- ..++|....+++.|++.+..+.+-+
T Consensus 73 ~~y~~a~liysi----rpp~el~~~~~~la~~~~~~~~i~~ 109 (134)
T PRK04148 73 EIYKNAKLIYSI----RPPRDLQPFILELAKKINVPLIIKP 109 (134)
T ss_pred HHHhcCCEEEEe----CCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 457889999863 4578999999999999998866655
No 191
>PTZ00445 p36-lilke protein; Provisional
Probab=22.76 E-value=1.5e+02 Score=25.18 Aligned_cols=26 Identities=4% Similarity=-0.010 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHhCCCe-EEEeCCch
Q 019448 171 SPDSIQLVAEHAAANNKV-FMMNLSAP 196 (341)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~-v~~d~~~~ 196 (341)
+.+....+.+.+++.|++ +.+|+...
T Consensus 27 ~~~~~~~~v~~L~~~GIk~Va~D~DnT 53 (219)
T PTZ00445 27 PHESADKFVDLLNECGIKVIASDFDLT 53 (219)
T ss_pred HHHHHHHHHHHHHHcCCeEEEecchhh
Confidence 457778888889999987 66777544
No 192
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=22.61 E-value=2e+02 Score=22.11 Aligned_cols=91 Identities=24% Similarity=0.313 Sum_probs=45.8
Q ss_pred EeeeecCchhHHHHHHHHhcCcceeeeecCCCCceeEEEEEeCCccceeecccccccCCcccCCCcchhhhhccceEEEE
Q 019448 84 IGCIGKDKFGEEMKKNSKLAGVNVHYYEDESASTGTCAVCVVGGERSLVANLSAANCYKSEHLKKPENWALVEKAKYFYI 163 (341)
Q Consensus 84 i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~i 163 (341)
|+.+|....|..+-..|.+.|..+..+........ ++.- ..+...... ...+.+.++|+++|
T Consensus 13 I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa---------~~a~-------~~~~~~~~~--~~~~~~~~aDlv~i 74 (127)
T PF10727_consen 13 IGIIGAGRVGTALARALARAGHEVVGVYSRSPASA---------ERAA-------AFIGAGAIL--DLEEILRDADLVFI 74 (127)
T ss_dssp EEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HH---------HHHH-------C--TT-------TTGGGCC-SEEEE
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccc---------cccc-------ccccccccc--ccccccccCCEEEE
Confidence 44555567888899999988876654421110000 0100 011000111 01245788999999
Q ss_pred eccccccCHHHHHHHHHHHHhCC----CeEEEeCCchh
Q 019448 164 AGFFLTVSPDSIQLVAEHAAANN----KVFMMNLSAPF 197 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~a~~~~----~~v~~d~~~~~ 197 (341)
+ .+.+.+..+.+.....+ -++++-.+...
T Consensus 75 a-----vpDdaI~~va~~La~~~~~~~g~iVvHtSGa~ 107 (127)
T PF10727_consen 75 A-----VPDDAIAEVAEQLAQYGAWRPGQIVVHTSGAL 107 (127)
T ss_dssp ------S-CCHHHHHHHHHHCC--S-TT-EEEES-SS-
T ss_pred E-----echHHHHHHHHHHHHhccCCCCcEEEECCCCC
Confidence 5 46778888888777652 24666666543
No 193
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=22.14 E-value=4.4e+02 Score=23.97 Aligned_cols=21 Identities=14% Similarity=0.363 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhCCCeEEEeC
Q 019448 173 DSIQLVAEHAAANNKVFMMNL 193 (341)
Q Consensus 173 ~~~~~~~~~a~~~~~~v~~d~ 193 (341)
+.+.++.+.|++.++++++++
T Consensus 142 a~vervg~eC~a~dipf~lE~ 162 (324)
T PRK12399 142 AYIERIGSECVAEDIPFFLEI 162 (324)
T ss_pred HHHHHHHHHHHHCCCCeEEEE
Confidence 357777788999999988865
No 194
>PF07505 Gp37_Gp68: Phage protein Gp37/Gp68; InterPro: IPR011101 This entry is represented by Burkholderia phage phiE125, Gp37. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.00 E-value=2.1e+02 Score=25.21 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=34.4
Q ss_pred hhhccceEEEEecccc----ccCHHHHHHHHHHHHhCCCeEEEeCCc
Q 019448 153 ALVEKAKYFYIAGFFL----TVSPDSIQLVAEHAAANNKVFMMNLSA 195 (341)
Q Consensus 153 ~~l~~~~~v~i~~~~~----~~~~~~~~~~~~~a~~~~~~v~~d~~~ 195 (341)
..+..-|+|+++|-+. .+.++-+..+.+.|.++|++|.+---+
T Consensus 184 ~~~~~IdWVIvGGESG~~ARp~~~~Wvr~irdqC~~~gvpFffKQwG 230 (261)
T PF07505_consen 184 LDLEGIDWVIVGGESGPGARPMHPDWVRSIRDQCAAAGVPFFFKQWG 230 (261)
T ss_pred ccCCCCCEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 3567889999998663 245788999999999999998886544
No 195
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=21.98 E-value=4.3e+02 Score=23.09 Aligned_cols=63 Identities=13% Similarity=0.056 Sum_probs=46.2
Q ss_pred hhhccceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhc-CCCcEEecCHHHHH
Q 019448 153 ALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVL-PYMDYIFGNETEAR 224 (341)
Q Consensus 153 ~~l~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l-~~~dvl~~n~~E~~ 224 (341)
....++|++++.+.. .+++.+.++++.++..|..+.+|..... + ++... -.+|++-.|...+.
T Consensus 129 a~~~GAD~VlLi~~~--l~~~~l~~li~~a~~lGl~~lvevh~~~------E-~~~A~~~gadiIgin~rdl~ 192 (260)
T PRK00278 129 ARAAGADAILLIVAA--LDDEQLKELLDYAHSLGLDVLVEVHDEE------E-LERALKLGAPLIGINNRNLK 192 (260)
T ss_pred HHHcCCCEEEEEecc--CCHHHHHHHHHHHHHcCCeEEEEeCCHH------H-HHHHHHcCCCEEEECCCCcc
Confidence 345678999998754 3678999999999999999999997643 2 22222 36899988855443
No 196
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=21.91 E-value=6.2e+02 Score=23.19 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=23.3
Q ss_pred cceEEEEecccc-ccCHHHHHHHHHHHHhCCCeEEEeCC
Q 019448 157 KAKYFYIAGFFL-TVSPDSIQLVAEHAAANNKVFMMNLS 194 (341)
Q Consensus 157 ~~~~v~i~~~~~-~~~~~~~~~~~~~a~~~~~~v~~d~~ 194 (341)
+.++++++..+. .....-+.++.+.++++++.+++|-.
T Consensus 125 ~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t 163 (369)
T cd00614 125 ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNT 163 (369)
T ss_pred CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECC
Confidence 456777664331 11112256777778888888888774
No 197
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=21.49 E-value=6.8e+02 Score=23.44 Aligned_cols=38 Identities=16% Similarity=0.041 Sum_probs=23.3
Q ss_pred cceEEEEeccc-cccCHHHHHHHHHHHHhCCCeEEEeCC
Q 019448 157 KAKYFYIAGFF-LTVSPDSIQLVAEHAAANNKVFMMNLS 194 (341)
Q Consensus 157 ~~~~v~i~~~~-~~~~~~~~~~~~~~a~~~~~~v~~d~~ 194 (341)
+.++|+++..+ +....-.+..+.+.|+++++.+++|-.
T Consensus 155 ~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a 193 (403)
T PRK07810 155 PTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNV 193 (403)
T ss_pred CceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECC
Confidence 45677765433 111122366777778888888888764
No 198
>PRK07324 transaminase; Validated
Probab=21.39 E-value=6.4e+02 Score=23.11 Aligned_cols=37 Identities=11% Similarity=0.066 Sum_probs=25.8
Q ss_pred cceEEEEecccc----ccCHHHHHHHHHHHHhCCCeEEEeC
Q 019448 157 KAKYFYIAGFFL----TVSPDSIQLVAEHAAANNKVFMMNL 193 (341)
Q Consensus 157 ~~~~v~i~~~~~----~~~~~~~~~~~~~a~~~~~~v~~d~ 193 (341)
+.++++++..+. ..+.+.+.++++.|++++..++.|-
T Consensus 153 ~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De 193 (373)
T PRK07324 153 NTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDE 193 (373)
T ss_pred CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEc
Confidence 456777764331 2366778888888988888877774
No 199
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=21.33 E-value=2.7e+02 Score=25.45 Aligned_cols=45 Identities=7% Similarity=-0.062 Sum_probs=31.6
Q ss_pred ccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCC-CcEEecCH
Q 019448 169 TVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPY-MDYIFGNE 220 (341)
Q Consensus 169 ~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~-~dvl~~n~ 220 (341)
.++.+....+.+.+++.|+.+.-.|-... .++.+.+. ++++++--
T Consensus 72 ~l~~e~~~~L~~~~~~~Gi~~~stpfd~~-------svd~l~~~~v~~~KIaS 117 (329)
T TIGR03569 72 ELSEEDHRELKEYCESKGIEFLSTPFDLE-------SADFLEDLGVPRFKIPS 117 (329)
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEeCCHH-------HHHHHHhcCCCEEEECc
Confidence 35788899999999999999888775432 13333344 77887533
No 200
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=21.31 E-value=5.2e+02 Score=24.04 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=26.3
Q ss_pred cceEEEEeccc-cccCHHHHHHHHHHHHhCCCeEEEeCC
Q 019448 157 KAKYFYIAGFF-LTVSPDSIQLVAEHAAANNKVFMMNLS 194 (341)
Q Consensus 157 ~~~~v~i~~~~-~~~~~~~~~~~~~~a~~~~~~v~~d~~ 194 (341)
+.++|+++..+ +......+..+.+.++++++.+++|-.
T Consensus 146 ~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a 184 (388)
T PRK07811 146 RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNT 184 (388)
T ss_pred CCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECC
Confidence 56788876433 222345577888888999999888874
No 201
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=21.23 E-value=4.2e+02 Score=25.22 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=25.5
Q ss_pred cceEEEEecccc-ccCHHHHHHHHHHHHhCCCeEEEeCC
Q 019448 157 KAKYFYIAGFFL-TVSPDSIQLVAEHAAANNKVFMMNLS 194 (341)
Q Consensus 157 ~~~~v~i~~~~~-~~~~~~~~~~~~~a~~~~~~v~~d~~ 194 (341)
+.++|+++..+. .....-+..+.+.++++|+++++|-.
T Consensus 155 ~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t 193 (436)
T PRK07812 155 NTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNT 193 (436)
T ss_pred CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECC
Confidence 456777765442 12223467777888899999988884
No 202
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=20.98 E-value=6.6e+02 Score=23.09 Aligned_cols=146 Identities=14% Similarity=0.110 Sum_probs=74.3
Q ss_pred hhhccceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCC
Q 019448 153 ALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGW 232 (341)
Q Consensus 153 ~~l~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~ 232 (341)
..+++..+.++-. ..--..+.++...-++.|++.++|.-.+.+. .+-+...++-+...+...
T Consensus 142 ~~l~~~g~~FlfA---p~~hp~~k~v~~vR~~LG~RTifN~LGPL~N--------Pa~~~~qliGV~~p~~~~------- 203 (338)
T COG0547 142 RALEETGIGFLFA---PAYHPAMKHVAPVRKELGVRTIFNLLGPLLN--------PARAKLQLIGVYHPELVE------- 203 (338)
T ss_pred HHHHhcCeEEEEc---cccCHHHHHHHHHHHHcCCCchHHhhccccC--------CCCCCceEEEEeCHHHHH-------
Confidence 4555555555421 1112356667777778888888877665421 222334455555544333
Q ss_pred CCCCHHHHHHHHhcCCccccCCccEEEEEeCCCce-----------EEEECCeeE--EEecee--cCCCcccCCCCCchh
Q 019448 233 ETDDVEEIALKLSQWPKASEIRKRTAVITQGADPV-----------VVAQDGKLK--KFPVIV--LPKDKLVDTNGAGDA 297 (341)
Q Consensus 233 ~~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~-----------~~~~~~~~~--~~~~~~--~~~~~~vd~tGAGDa 297 (341)
..++.+ ...|.+..+|-+|.+|. ....+++.. .+.+.. .+.....+-.|..-.
T Consensus 204 ------~~A~~l------~~LG~~ralvV~G~~GlDE~~~~~~t~v~~l~~g~i~~~~l~pe~~Gl~~~~~~~l~~~~~~ 271 (338)
T COG0547 204 ------LLAEAL------RLLGVERALVVHGLEGLDEVTPTGTTLVAELKDGEIREYTLTPEDFGLERAPLEDLPGGDPE 271 (338)
T ss_pred ------HHHHHH------HHhCcceEEEEECCCCcccccCCCCceEEEEcCCceEEEEeCHHhcCCCCCchhhcCCCCHH
Confidence 333344 33466677777787663 222333332 222221 111122344455444
Q ss_pred hHHHHHHHHhcCCC-HHHHHHHHHHHhhhhhh
Q 019448 298 FVGGFLSQLVQEKP-IEECVRAGCYTSHVIIQ 328 (341)
Q Consensus 298 f~ag~~~~l~~g~~-~~~a~~~a~~~Aa~~v~ 328 (341)
-.+.++-..+.|.. ...-.-..|+++++.+.
T Consensus 272 ena~~~~~vL~G~~~~~~d~v~~Naa~~L~~~ 303 (338)
T COG0547 272 ENAEILRAVLAGEEGPARDAVALNAAAALYAA 303 (338)
T ss_pred HHHHHHHHHHCCCCcchHHHHHHHHHHHHHHc
Confidence 56788888888854 44334445555555554
No 203
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=20.90 E-value=3.1e+02 Score=19.26 Aligned_cols=36 Identities=11% Similarity=0.050 Sum_probs=26.2
Q ss_pred ccceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCC
Q 019448 156 EKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLS 194 (341)
Q Consensus 156 ~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~ 194 (341)
.++.+|++.. +.++++...+...|+.+++|+.+..+
T Consensus 23 gkakLViiA~---Da~~~~~k~i~~~c~~~~Vpv~~~~t 58 (82)
T PRK13601 23 CNVLQVYIAK---DAEEHVTKKIKELCEEKSIKIVYIDT 58 (82)
T ss_pred CCeeEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEeCC
Confidence 4567777765 56778888888888888888865554
No 204
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=20.83 E-value=7.2e+02 Score=23.50 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=34.8
Q ss_pred cCCcccCCCcchhhhhccceEEEEecccc----ccCHHHHHHHHHHHHhCCCeEEEeC
Q 019448 140 CYKSEHLKKPENWALVEKAKYFYIAGFFL----TVSPDSIQLVAEHAAANNKVFMMNL 193 (341)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~~~~v~i~~~~~----~~~~~~~~~~~~~a~~~~~~v~~d~ 193 (341)
.+++++++. ..-++.++++++.-+. ..+.+.+.++.+.|+++++.++.|-
T Consensus 159 ~~D~~~le~----~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDe 212 (420)
T KOG0257|consen 159 TLDPEELES----KITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDE 212 (420)
T ss_pred cCChHHHHh----hccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhh
Confidence 444455443 4457789999975442 2367889999999999997776654
No 205
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=20.63 E-value=4.9e+02 Score=21.92 Aligned_cols=99 Identities=15% Similarity=0.111 Sum_probs=58.0
Q ss_pred hhhhhccceEEEEeccccccCHHHHHHHHHHHHhCCC-----eEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHH
Q 019448 151 NWALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNK-----VFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEART 225 (341)
Q Consensus 151 ~~~~l~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~-----~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~ 225 (341)
....+.++++|+++--+-.+..|.+..+...+..-.- ...++-..+ +.+ .+-.+..++.++....+.
T Consensus 9 ~~~~~~~~~aVcFDvDSTvi~eEgIdelA~~~G~~~~Va~~T~rAMng~~~-----F~e---aL~~Rl~llqp~~~qv~~ 80 (227)
T KOG1615|consen 9 LAKLWRSADAVCFDVDSTVIQEEGIDELAAYCGVGEAVAEVTRRAMNGEAD-----FQE---ALAARLSLLQPLQVQVEQ 80 (227)
T ss_pred HHHHHHhcCeEEEecCcchhHHhhHHHHHHHhCchHHHHHHHHHHhCCCCc-----HHH---HHHHHHHHhcccHHHHHH
Confidence 3466788999999865544455666666655532100 000111100 122 223356688888888877
Q ss_pred HhhhcCCC-CCCHHHHHHHHhcCCccccCCccEEEEEeC
Q 019448 226 FSKVQGWE-TDDVEEIALKLSQWPKASEIRKRTAVITQG 263 (341)
Q Consensus 226 l~~~~~~~-~~d~~~~~~~l~~~~~~~~~~~~~vvvt~G 263 (341)
+....... ....++++.+| +.+|++..+++-|
T Consensus 81 ~v~~~k~~lT~Gi~eLv~~L------~~~~~~v~liSGG 113 (227)
T KOG1615|consen 81 FVIKQKPTLTPGIRELVSRL------HARGTQVYLISGG 113 (227)
T ss_pred HHhcCCCccCCCHHHHHHHH------HHcCCeEEEEcCC
Confidence 65432111 34678999999 7889998888865
No 206
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=20.61 E-value=3.3e+02 Score=23.86 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=19.1
Q ss_pred CCHHHHHHHHhcCCccccCCccEEEEEeCCCceEEE
Q 019448 235 DDVEEIALKLSQWPKASEIRKRTAVITQGADPVVVA 270 (341)
Q Consensus 235 ~d~~~~~~~l~~~~~~~~~~~~~vvvt~G~~G~~~~ 270 (341)
.|.+++++.+ ... .+.|+.|.|.+...-+
T Consensus 115 ~d~~ea~~~~------~~~-~~rVflt~G~~~l~~f 143 (257)
T COG2099 115 ADIEEAAEAA------KQL-GRRVFLTTGRQNLAHF 143 (257)
T ss_pred cCHHHHHHHH------hcc-CCcEEEecCccchHHH
Confidence 4566666665 222 2679999999886555
No 207
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=20.56 E-value=2.8e+02 Score=24.94 Aligned_cols=95 Identities=12% Similarity=0.190 Sum_probs=46.4
Q ss_pred hccceEEEEeccccccCHHHHHHHHHHHHhCCCeEEEeCCchhHHHHHHHHHHhhcCCCcEEecCHHHHHHHhhhcCCCC
Q 019448 155 VEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKVFMMNLSAPFICEFFKDALEKVLPYMDYIFGNETEARTFSKVQGWET 234 (341)
Q Consensus 155 l~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~~~~~~~~~~~~l~~~dvl~~n~~E~~~l~~~~~~~~ 234 (341)
-.++|++++++.. .+.+.++ ++....+++++....+. +.+++-.+..-=++.-++|+..+..
T Consensus 116 a~kPdLIIiggR~----ak~yd~l----~kiAPti~l~~d~~n~~----~S~~~n~e~Lg~IFgkE~eAk~~~~------ 177 (320)
T COG4607 116 AAKPDLIIIGGRA----AKAYDKL----SKIAPTIDLGADTANLI----ESTKQNIETLGKIFGKEEEAKELLA------ 177 (320)
T ss_pred hcCCCEEEECcHH----HHHHHHH----HhhCCeEEeccchHHHH----HHHHHHHHHHHHHhCchHHHHHHHH------
Confidence 4678999998743 3344444 44445677777654422 2222222222223445566666543
Q ss_pred CCHHHHHHHHhcCCccccCC-ccEEEEEeCCCceEEE
Q 019448 235 DDVEEIALKLSQWPKASEIR-KRTAVITQGADPVVVA 270 (341)
Q Consensus 235 ~d~~~~~~~l~~~~~~~~~~-~~~vvvt~G~~G~~~~ 270 (341)
+.+...+.+.+.. ...+ ...+|.+.|.+=+.+.
T Consensus 178 -~id~~i~~~k~~a--~~~~~t~m~il~ngGkisafG 211 (320)
T COG4607 178 -DIDASIAAAKEKA--AGKGKTALVILVNGGKISAFG 211 (320)
T ss_pred -HHHHHHHHHHHHh--hccCCeeEEEEecCCeeeeec
Confidence 2333333322211 2334 4567777666555554
No 208
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=20.54 E-value=6e+02 Score=23.76 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=23.0
Q ss_pred cceEEEEecccc-ccCHHHHHHHHHHHHhCCCeEEEeCC
Q 019448 157 KAKYFYIAGFFL-TVSPDSIQLVAEHAAANNKVFMMNLS 194 (341)
Q Consensus 157 ~~~~v~i~~~~~-~~~~~~~~~~~~~a~~~~~~v~~d~~ 194 (341)
+.++|+++.... ....-.+..+.+.++++++.+++|-.
T Consensus 149 ~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t 187 (398)
T PRK08249 149 GCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNT 187 (398)
T ss_pred CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECC
Confidence 456777754331 11112256677778888888888775
No 209
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=20.44 E-value=2.1e+02 Score=24.28 Aligned_cols=72 Identities=15% Similarity=0.087 Sum_probs=49.9
Q ss_pred hhhhccceEEEEeccccccCHHHHHHHHHHHHh-CCCeEEEeCCchhH-------------HHHHHHHHHhhcCCCcEEe
Q 019448 152 WALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAA-NNKVFMMNLSAPFI-------------CEFFKDALEKVLPYMDYIF 217 (341)
Q Consensus 152 ~~~l~~~~~v~i~~~~~~~~~~~~~~~~~~a~~-~~~~v~~d~~~~~~-------------~~~~~~~~~~~l~~~dvl~ 217 (341)
.+..+.+|++++. +|.+.+..+++..+. .+-++.+|+..+.. .....+.+.++++.+.+++
T Consensus 55 ~dA~~~aDVVvLA-----VP~~a~~~v~~~l~~~~~~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVk 129 (211)
T COG2085 55 EDAAALADVVVLA-----VPFEAIPDVLAELRDALGGKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVK 129 (211)
T ss_pred HHHHhcCCEEEEe-----ccHHHHHhHHHHHHHHhCCeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhh
Confidence 3678889999994 577777777776665 44577788876621 1124566788888888888
Q ss_pred -cCHHHHHHHhh
Q 019448 218 -GNETEARTFSK 228 (341)
Q Consensus 218 -~n~~E~~~l~~ 228 (341)
.|.-.+..|..
T Consensus 130 AFn~i~a~~l~~ 141 (211)
T COG2085 130 AFNTIPAAVLAD 141 (211)
T ss_pred hhcccCHHHhcc
Confidence 67666666643
No 210
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=20.42 E-value=1.3e+02 Score=21.59 Aligned_cols=24 Identities=8% Similarity=0.011 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHhCCCeEEEeCC
Q 019448 171 SPDSIQLVAEHAAANNKVFMMNLS 194 (341)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~v~~d~~ 194 (341)
-.+...++++.|+++++++.-|+.
T Consensus 30 ~G~iAe~II~~Ake~~Vpi~edp~ 53 (92)
T COG2257 30 KGEIAEKIIEKAKEHGVPIQEDPL 53 (92)
T ss_pred chHHHHHHHHHHHHcCCCcccCHH
Confidence 467889999999999999987773
No 211
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=20.38 E-value=97 Score=30.07 Aligned_cols=44 Identities=9% Similarity=0.040 Sum_probs=28.8
Q ss_pred hhhccceEEEEeccccccCHHHHHHHHHHHHhCCCe-EEEeCCch
Q 019448 153 ALVEKAKYFYIAGFFLTVSPDSIQLVAEHAAANNKV-FMMNLSAP 196 (341)
Q Consensus 153 ~~l~~~~~v~i~~~~~~~~~~~~~~~~~~a~~~~~~-v~~d~~~~ 196 (341)
..+.++|++++=|..+..+.......+..++++|.+ +++||+..
T Consensus 153 ~d~~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDPr~t 197 (501)
T cd02766 153 EDMVNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDPYRT 197 (501)
T ss_pred HHHhcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECCCCC
Confidence 457889999998866432212234445568888865 78898653
No 212
>COG4868 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.14 E-value=1.6e+02 Score=26.66 Aligned_cols=47 Identities=11% Similarity=0.083 Sum_probs=36.8
Q ss_pred CcEEEEeeeecCchhHHHHHHHHhcCcceee-eecCCCCceeEEEEEe
Q 019448 79 GATSYIGCIGKDKFGEEMKKNSKLAGVNVHY-YEDESASTGTCAVCVV 125 (341)
Q Consensus 79 ~~v~~i~~vG~D~~g~~i~~~l~~~gi~~~~-~~~~~~~t~~~~~~~~ 125 (341)
.....++..-+++....+++.|+++||.... ..+++.+|..-.++.+
T Consensus 108 v~sVViTqyed~p~a~aF~~rLEr~Gikvy~H~~ikGYPtD~~~IvS~ 155 (493)
T COG4868 108 VGSVVITQYEDQPAADAFRTRLERNGIKVYLHYPIKGYPTDVDHIVSD 155 (493)
T ss_pred eeeEEEEecCCChhHHHHHHHHHhcCcceEEecccCCCCCchhheeCc
Confidence 4456788888889999999999999998754 3467777777766655
Done!