Query 019449
Match_columns 341
No_of_seqs 188 out of 1607
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 09:33:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019449.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019449hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4567 GTPase-activating prot 100.0 2.1E-44 4.5E-49 318.4 22.0 278 45-338 11-331 (370)
2 KOG2058 Ypt/Rab GTPase activat 100.0 1E-44 2.2E-49 341.6 20.0 237 44-340 124-370 (436)
3 smart00164 TBC Domain in Tre-2 100.0 5.7E-41 1.2E-45 293.8 17.9 192 67-315 2-196 (199)
4 KOG1092 Ypt/Rab-specific GTPas 100.0 1.3E-37 2.8E-42 285.0 16.9 239 56-340 176-441 (484)
5 COG5210 GTPase-activating prot 100.0 1.7E-36 3.6E-41 299.3 20.0 241 42-340 182-430 (496)
6 KOG2223 Uncharacterized conser 100.0 1.9E-36 4.1E-41 277.5 18.2 233 60-340 292-527 (586)
7 PF00566 RabGAP-TBC: Rab-GTPas 100.0 3.6E-35 7.8E-40 259.3 22.1 169 166-337 45-214 (214)
8 KOG2224 Uncharacterized conser 100.0 8.5E-36 1.8E-40 273.2 17.5 276 23-337 385-696 (781)
9 KOG2197 Ypt/Rab-specific GTPas 100.0 1.8E-33 3.8E-38 273.2 14.2 319 17-338 25-409 (488)
10 KOG2222 Uncharacterized conser 100.0 8.6E-32 1.9E-36 249.4 14.7 222 58-339 159-383 (848)
11 KOG4347 GTPase-activating prot 100.0 3.1E-29 6.8E-34 241.0 14.1 235 45-340 175-412 (671)
12 KOG1093 Predicted protein kina 100.0 3.7E-28 8E-33 230.1 17.8 173 167-340 390-563 (725)
13 KOG4436 Predicted GTPase activ 100.0 4.8E-27 1.1E-31 229.3 19.6 237 44-340 550-794 (948)
14 KOG1091 Ypt/Rab-specific GTPas 99.9 1.4E-26 3E-31 219.3 15.7 248 72-340 27-334 (625)
15 KOG1102 Rab6 GTPase activator 99.9 1.1E-24 2.5E-29 208.0 12.4 249 28-339 91-355 (397)
16 KOG2595 Predicted GTPase activ 99.9 1.3E-23 2.9E-28 188.4 12.9 169 167-339 96-269 (395)
17 KOG2221 PDZ-domain interacting 99.9 9.9E-23 2.1E-27 172.4 4.3 188 44-292 76-267 (267)
18 KOG4436 Predicted GTPase activ 99.6 2.9E-14 6.2E-19 140.6 13.1 221 61-338 176-407 (948)
19 KOG3636 Uncharacterized conser 99.4 1.7E-12 3.7E-17 120.9 11.6 146 190-341 91-238 (669)
20 KOG1648 Uncharacterized conser 99.2 4.6E-13 1E-17 125.9 -3.4 219 31-310 521-739 (813)
21 KOG2801 Probable Rab-GAPs [Int 98.3 1.1E-05 2.4E-10 72.4 12.5 146 188-335 108-254 (559)
22 PF14961 BROMI: Broad-minded p 94.7 0.59 1.3E-05 50.3 13.4 144 194-339 1086-1246(1296)
23 KOG2224 Uncharacterized conser 84.8 0.33 7.2E-06 46.3 0.4 33 208-240 566-598 (781)
24 KOG2197 Ypt/Rab-specific GTPas 79.7 0.95 2E-05 45.0 1.5 77 41-118 148-225 (488)
25 KOG1102 Rab6 GTPase activator 41.4 1.9 4.1E-05 41.8 -4.6 115 198-339 24-138 (397)
26 PF10815 ComZ: ComZ; InterPro 36.0 91 0.002 20.9 4.1 40 261-300 5-44 (56)
27 KOG4631 NADH:ubiquinone oxidor 35.2 34 0.00073 25.6 2.2 27 57-83 24-51 (100)
28 PF13282 DUF4070: Domain of un 33.9 1E+02 0.0022 25.4 5.1 31 58-88 83-113 (146)
29 PF13864 Enkurin: Calmodulin-b 31.2 1.7E+02 0.0037 22.0 5.7 27 90-116 37-63 (98)
30 PF08109 Antimicrobial14: Lact 30.2 38 0.00083 19.1 1.4 14 209-222 4-17 (31)
31 PRK10878 hypothetical protein; 23.8 1.1E+02 0.0023 22.0 3.1 29 256-284 21-49 (72)
32 PF13041 PPR_2: PPR repeat fam 23.6 1.2E+02 0.0027 19.1 3.3 26 272-297 24-49 (50)
33 COG2938 Uncharacterized conser 22.3 3.5E+02 0.0077 20.5 6.4 36 257-292 47-82 (94)
34 PF12854 PPR_1: PPR repeat 20.3 2E+02 0.0043 16.8 3.5 31 281-311 2-32 (34)
No 1
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=2.1e-44 Score=318.35 Aligned_cols=278 Identities=26% Similarity=0.442 Sum_probs=222.2
Q ss_pred HHHHhhcc-CCCcCHHHHHHHHHhCCCC--CChhHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 019449 45 RWHAAFSE-DGHLDIAKVLRRIQRGGIH--PSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIG 121 (341)
Q Consensus 45 ~W~~~~~~-~~~i~~~~l~~~~~~~GIp--~~~R~~vW~~llg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~ 121 (341)
..+..+.. +..++..+ +++++..|+| ..+|+.+|+++||++|++.+.+ ...+.+.+..|..+..+... .++
T Consensus 11 ~~edvl~~~~~~id~ke-lr~~~~~g~p~~~~lR~~~WkllL~Yl~~er~~w--~s~La~~R~~Y~q~i~e~v~---epg 84 (370)
T KOG4567|consen 11 SIEDVLNPADDTIDLKE-LRKLCFYGVPDDASLRPLVWKLLLGYLPPERSKW--TSFLAKKRSLYKQFIEEIVD---EPG 84 (370)
T ss_pred hHHHhhccccchhhHHH-HHHHhhcCCCCccchhHhHHHHHHhhcChhhhhh--HHHHHHHHHHHHHHHHHhcc---Ccc
Confidence 44455554 34478888 7777778999 7999999999999999998765 56788899999998887422 111
Q ss_pred CCccccccccccCCCccCCCCCcCcCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCccCCCh---h---------
Q 019449 122 SGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE---T--------- 189 (341)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~---~--------- 189 (341)
......+ .+..++..+||.+..+.+.| +...++.+.+.||++||.||.|+..+|+.. +
T Consensus 85 ~~~~~~~--v~~~D~~~dhPls~~~~sdw--------n~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~ 154 (370)
T KOG4567|consen 85 KKDNSKK--VDSNDTDEDHPLSLGPTSDW--------NTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRR 154 (370)
T ss_pred ccccccc--cccCcccccCCCCCCchhhH--------HHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHh
Confidence 1111111 11122444577766555554 456667789999999999999999988752 0
Q ss_pred ---------------hHHHHHHHHHHHhHhcCCCCcCCChHHHHHHHHhhhh----------chhHHHHHHHHHHHHHHh
Q 019449 190 ---------------NQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLE----------NEADAFWCFEHTMRRLRE 244 (341)
Q Consensus 190 ---------------~~~~L~~IL~~y~~~~p~igY~QGm~~i~a~ll~~~~----------~E~~aF~~~~~l~~~~~~ 244 (341)
......|||.+||..||.||||||||+|+||+++|+. .|+|||+||+++|..+++
T Consensus 155 ~i~~~q~~~~n~~gl~~~~~erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirD 234 (370)
T KOG4567|consen 155 RINASQEAGRNRLGLTRFAAERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIRD 234 (370)
T ss_pred hhhhhhHhhhcccchhhhHHHHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHHH
Confidence 1223578999999999999999999999999999984 499999999999999999
Q ss_pred hhccC--CChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCCchHHHHHHHHHccccCCHHhHHHHHHHHHhcc-CchhH
Q 019449 245 NFRTN--TGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEILADIT-GNLDA 321 (341)
Q Consensus 245 ~~~~~--~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~f~~~W~~~lF~~~l~~~~v~riWD~l~~~~-g~~~l 321 (341)
+|..+ ++..|++..+..+..+|+.+|-+||.||++.+|.|++|+++|+.++++.+||+++|+||||.+++.+ +.-.+
T Consensus 235 nf~k~LDdS~~GI~~~Msr~~~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~L 314 (370)
T KOG4567|consen 235 NFIKTLDDSVGGIHFLMSRLSELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFL 314 (370)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHH
Confidence 99753 4556888889999999999999999999999999999999999999999999999999999887544 33344
Q ss_pred HHHHHHHHHHhHHHhhc
Q 019449 322 KKACNEALKIQKKYLSK 338 (341)
Q Consensus 322 ~~~~~~~l~l~~~~ll~ 338 (341)
.++|++++.+.|+.|++
T Consensus 315 l~iCcsmlil~Re~il~ 331 (370)
T KOG4567|consen 315 LYICCSMLILVRERILE 331 (370)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 59999999999999875
No 2
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-44 Score=341.62 Aligned_cols=237 Identities=26% Similarity=0.385 Sum_probs=202.3
Q ss_pred HHHHHhhccC-------CCcCHHHHHHHHHhCCCCCChhHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019449 44 RRWHAAFSED-------GHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNI 116 (341)
Q Consensus 44 ~~W~~~~~~~-------~~i~~~~l~~~~~~~GIp~~~R~~vW~~llg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~ 116 (341)
.+|...+.++ ........+++++++|||+++|+.||..+.|.... ...+..|+.+......
T Consensus 124 ~~~~l~~~~~~~~~~~~~~~~~s~elk~liRkGiP~~~R~~VW~~~~g~~~~-----------~~~~~~yq~ll~~~~~- 191 (436)
T KOG2058|consen 124 LRWELELQSNIKLHSPNDFPPRSDELKRLIRKGIPPELRGEVWWVLSGARRQ-----------LNYPGYYQELLRKGDE- 191 (436)
T ss_pred HHHHHHhhhhhcccccccccCCcHHHHHHHHcCCChhhhhHHHHHHhcchhh-----------ccCchhHHHHHhcCCC-
Confidence 5677776653 12223334999999999999999999999993211 1115677776654100
Q ss_pred ccccCCCccccccccccCCCccCCCCCcCcCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCC-ccCCChh--hHHH
Q 019449 117 VPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSL-VFYESET--NQAK 193 (341)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~-~~f~~~~--~~~~ 193 (341)
+. ....++|+.|+.||||++ +.|..+. ++..
T Consensus 192 ------------------------------------------~~----~~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~ 225 (436)
T KOG2058|consen 192 ------------------------------------------KK----SPVVKQIKLDLPRTFPDNFKGFDSEDSDGRQT 225 (436)
T ss_pred ------------------------------------------cc----chHHHHHHhccccccCCCcccCCCCCchHHHH
Confidence 00 036789999999999999 7887654 4899
Q ss_pred HHHHHHHHhHhcCCCCcCCChHHHHHHHHhhhhchhHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhhCHHH
Q 019449 194 LWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKL 273 (341)
Q Consensus 194 L~~IL~~y~~~~p~igY~QGm~~i~a~ll~~~~~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L 273 (341)
|+|||.||+.+||+||||||||++||++|+++.+|++|||||+.+++++.+.|+ .+++.|.+.++.+++.+++..+|+|
T Consensus 226 LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~iie~~lp~Yy-t~nL~g~qvDQ~VL~~llre~lPkl 304 (436)
T KOG2058|consen 226 LRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVALIENYLPRYY-TPNLIGSQVDQKVLRELLREKLPKL 304 (436)
T ss_pred HHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhchhhc-CchhhhhhccHHHHHHHHHHHCHHH
Confidence 999999999999999999999999999999997799999999999999888855 6789999999999999999999999
Q ss_pred HHHHHhCCCCCchHHHHHHHHHccccCCHHhHHHHHHHHHhccCchhHHHHHHHHHHHhHHHhhccc
Q 019449 274 HQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEILADITGNLDAKKACNEALKIQKKYLSKSK 340 (341)
Q Consensus 274 ~~hl~~~~i~~~~f~~~W~~~lF~~~l~~~~v~riWD~l~~~~g~~~l~~~~~~~l~l~~~~ll~~~ 340 (341)
+.||...+++..+++++||+|+|+..+|.+.++||||.+|.+ |...++++++++++.+++.+++.+
T Consensus 305 ~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~e-Gskvlfr~Alai~k~~ee~il~~~ 370 (436)
T KOG2058|consen 305 SLHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYE-GSKVLFRVALAILKKHEEEILKED 370 (436)
T ss_pred HHhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHhHHHHhcCC
Confidence 999999999999999999999999999999999999999976 999999999999999999999864
No 3
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=100.00 E-value=5.7e-41 Score=293.75 Aligned_cols=192 Identities=32% Similarity=0.612 Sum_probs=168.7
Q ss_pred hCCCCCChhHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCccccccccccCCCccCCCCCcCc
Q 019449 67 RGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSL 146 (341)
Q Consensus 67 ~~GIp~~~R~~vW~~llg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 146 (341)
++|||+.+|+.||+.++|+.+...+ ..+..|.+++++.... +
T Consensus 2 ~~Gip~~~R~~vW~~ll~~~~~~~~---------~~~~~Y~~l~~~~~~~------------------------~----- 43 (199)
T smart00164 2 RKGVPPSLRGVVWKLLLNAQPMDTS---------ADKDLYSRLLKETAPK------------------------D----- 43 (199)
T ss_pred CCCCCHHHHHHHHHHHhCCchhhhc---------ccchHHHHHHHhhcCC------------------------C-----
Confidence 6899999999999999998764432 1357888887764210 0
Q ss_pred CCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCccCCCh--hhHHHHHHHHHHHhHhcCCCCcCCChHHHHHHHHhh
Q 019449 147 DQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE--TNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVL 224 (341)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~--~~~~~L~~IL~~y~~~~p~igY~QGm~~i~a~ll~~ 224 (341)
....++|++||.||+|++++|+.. ..++.|.|||.+|+.++|++||||||++|||+|+.+
T Consensus 44 ------------------~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~~~~~~~p~~gY~QGm~~i~~~ll~~ 105 (199)
T smart00164 44 ------------------KSIVHQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLV 105 (199)
T ss_pred ------------------hhhHHHHhcccCCCCCCchhhcCCCcccHHHHHHHHHHHHHHCCCCceeccHHHHHHHHHHh
Confidence 024679999999999999999864 589999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhhCHHHHHHHHh-CCCCCchHHHHHHHHHccccCCHH
Q 019449 225 LENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLED-LDGGEYLFAFRMLMVLFRREFSFV 303 (341)
Q Consensus 225 ~~~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~-~~i~~~~f~~~W~~~lF~~~l~~~ 303 (341)
+.+|++|||||.++|++..+.++ .++++++...+..++.+++..+|+||+||.+ .|+++..|+.+|++++|++++|++
T Consensus 106 ~~~e~~af~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~ 184 (199)
T smart00164 106 MPDEEDAFWCLVKLMERYGPNFY-LPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDKLGIDPSLYALRWFLTLFARELPLE 184 (199)
T ss_pred cCCHHHHHHHHHHHHHHhCcccC-CCChHHHHHHHHHHHHHHHHHCHHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHH
Confidence 97899999999999999877764 5667789999999999999999999999996 999999999999999999999999
Q ss_pred hHHHHHHHHHhc
Q 019449 304 DALYLWEILADI 315 (341)
Q Consensus 304 ~v~riWD~l~~~ 315 (341)
.++||||+++.+
T Consensus 185 ~~~riwD~~l~e 196 (199)
T smart00164 185 IVLRIWDVLFAE 196 (199)
T ss_pred HHHHHHHHHHhc
Confidence 999999999876
No 4
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-37 Score=284.97 Aligned_cols=239 Identities=26% Similarity=0.498 Sum_probs=209.4
Q ss_pred cCHHHHHHHHHhCCCCCChhHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCccccccccccCC
Q 019449 56 LDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDG 135 (341)
Q Consensus 56 i~~~~l~~~~~~~GIp~~~R~~vW~~llg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (341)
+|.. ++++++++|||...|+.+|++++|+.|+++. -+..+.+.++.+|.+++.++.....
T Consensus 176 id~~-~Lr~l~w~Gvp~~~Rp~~Wkll~gylp~n~~--rr~~~l~~Kr~eY~~~v~~~~~~~~----------------- 235 (484)
T KOG1092|consen 176 IDLE-KLRKLCWNGVPSKMRPIVWKLLSGYLPPNSD--RREGTLQRKRKEYVDSVVQYFDSLT----------------- 235 (484)
T ss_pred ccHH-HHHHHccCCCCccccCccceeeecccCcchh--hhhhhHHHHHHHHHHHHHHHhccCC-----------------
Confidence 3444 4999999999999999999999999999874 4557788899999999999864311
Q ss_pred CccCCCCCcCcCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCccCCChhhHHHHHHHHHHHhHhcCCCCcCCChH
Q 019449 136 QSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMN 215 (341)
Q Consensus 136 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~L~~IL~~y~~~~p~igY~QGm~ 215 (341)
+. + +..++.+||..|+.|+.|..+.|+.+-.++.+.|||+.++.++|..||+||.+
T Consensus 236 ~~---------~---------------~~~d~~rQI~id~prm~p~~~l~q~~~vq~~lerIl~iwairhpAsGyvqgin 291 (484)
T KOG1092|consen 236 NG---------D---------------EDQDTWRQIPIDIPRMNPHIPLFQQKIVQEMLERILYIWAIRHPASGYVQGIN 291 (484)
T ss_pred Cc---------c---------------ccCccccccccCCCCCCccccchhhHHHHHHHHHHHHHHHHhcccccccccce
Confidence 00 0 00156899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhh-------------------------chhHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhhC
Q 019449 216 DICSPMIVLLE-------------------------NEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTID 270 (341)
Q Consensus 216 ~i~a~ll~~~~-------------------------~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 270 (341)
+++.|++.++. -|++||||+..|++.+.++|.+.+ +||+.....++.|++..|
T Consensus 292 dlvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~~~~iEADsyWClskLLD~IQDNYtfaQ--pGIq~kV~~L~eLv~RID 369 (484)
T KOG1092|consen 292 DLVTPFFVVFLSEYLGPIMDVESIDMSLLPAENAEDIEADAYWCLSKLLDGIQDNYTFAQ--PGIQRKVKNLKELVQRID 369 (484)
T ss_pred eeechhhhhhhHhhcCccccccccchhhccHHHHhhhhhhHHHHHHHHHHHhhhhhhhcC--hhHHHHHHHHHHHHHHhc
Confidence 99999998872 299999999999999999999774 699999999999999999
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHccccCCHHhHHHHHHHHHhccCch-hH-HHHHHHHHHHhHHHhhccc
Q 019449 271 PKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEILADITGNL-DA-KKACNEALKIQKKYLSKSK 340 (341)
Q Consensus 271 P~L~~hl~~~~i~~~~f~~~W~~~lF~~~l~~~~v~riWD~l~~~~g~~-~l-~~~~~~~l~l~~~~ll~~~ 340 (341)
+.+++||+++|++-.+|++||+.+||.|+||+..++|+||-++++...+ .+ .++|+|.|.-.+++|+++.
T Consensus 370 ~~~hkHlq~~gveylQFAFRWmNcLLmRE~pl~~~iRlWDTY~aE~dgf~~FhvYvcAAFL~kW~~eL~e~D 441 (484)
T KOG1092|consen 370 EPLHKHLQEHGVEYLQFAFRWMNCLLMREFPLRCTIRLWDTYLAEPDGFNEFHVYVCAAFLLKWSSELMEND 441 (484)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHhhccchhHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999999999999998873333 33 3899999999999999764
No 5
>COG5210 GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=1.7e-36 Score=299.28 Aligned_cols=241 Identities=29% Similarity=0.476 Sum_probs=201.6
Q ss_pred CHHHHHHhhccCCC-c---CHHHHHHHHHhCCCCCChhHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 019449 42 SARRWHAAFSEDGH-L---DIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIV 117 (341)
Q Consensus 42 ~~~~W~~~~~~~~~-i---~~~~l~~~~~~~GIp~~~R~~vW~~llg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~ 117 (341)
....|.+.+...+. . ...+ ++.+.+.|||+.+|+.||..++|+.+.... ....|..+.+.+....
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~gip~~~r~~vw~~~~~~~~~~~~----------~~~~y~~~~~~~~~~~ 250 (496)
T COG5210 182 ADKLWISYLDPNPLSFLPVQLSK-LRELIRKGIPNELRGDVWEFLLGIGFDLDK----------NPGLYERLLNLHREAK 250 (496)
T ss_pred HHHHHHHHHhcccchhhhhhHHH-HHHHHHhcCChHhhhhhHHHHhccchhhcc----------CchHHHHHHHHHHhcC
Confidence 34567788776554 2 3444 777788899999999999999998765332 3455555555432210
Q ss_pred cccCCCccccccccccCCCccCCCCCcCcCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCccCCChhhHHH--HH
Q 019449 118 PIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAK--LW 195 (341)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~--L~ 195 (341)
.|. ....++|++||.||+|.+..|+.+..... |+
T Consensus 251 ----------------------~~~----------------------~~~~~~i~~Dl~rt~~~~~~f~~~~s~~~~~L~ 286 (496)
T COG5210 251 ----------------------IPT----------------------QEIISQIEKDLSRTFPDNSLFQTEISIRAENLR 286 (496)
T ss_pred ----------------------CCc----------------------HHHHHHHHccccccccccccccCcccccHHHHH
Confidence 000 03578999999999999999988766655 99
Q ss_pred HHHHHHhHhcCCCCcCCChHHHHHHHHhhhhchhHHHHHHHHHHHH--HHhhhccCCChhhHHHHHHHHHHHHHhhCHHH
Q 019449 196 DVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRR--LRENFRTNTGMIGVQSQLSTLSQIIRTIDPKL 273 (341)
Q Consensus 196 ~IL~~y~~~~p~igY~QGm~~i~a~ll~~~~~E~~aF~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L 273 (341)
|||.+|+.+||++||||||++++|+|++++..|+.||||+++||.. ++..|. .++.|+...+.++..+++..+|+|
T Consensus 287 rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee~AF~~l~~L~~~~~l~~~~~--~~~~G~~~~~~~l~~~v~~~~p~l 364 (496)
T COG5210 287 RVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLLKNYGLPGYFL--KNLSGLHRDLKVLDDLVEELDPEL 364 (496)
T ss_pred HHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhHHHHHHHHHHHHhccchhhcc--cCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997799999999999994 444443 557899999999999999999999
Q ss_pred HHHHHhCCCCCchHHHHHHHHHccccCCHHhHHHHHHHHHhccCchhHHHHHHHHHHHhHHHhhccc
Q 019449 274 HQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEILADITGNLDAKKACNEALKIQKKYLSKSK 340 (341)
Q Consensus 274 ~~hl~~~~i~~~~f~~~W~~~lF~~~l~~~~v~riWD~l~~~~g~~~l~~~~~~~l~l~~~~ll~~~ 340 (341)
|+||...++....|+++||+++|.+++|++.++||||.+|.+ |...++.++++++...+..++++.
T Consensus 365 ~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~e-g~~~l~~~~~~~l~~~~~~l~~~~ 430 (496)
T COG5210 365 YEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLE-GSSMLFQLALAILKLLRDKLLKLD 430 (496)
T ss_pred HHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhhhhhhhccC
Confidence 999999999999999999999999999999999999999976 899999999999999999988875
No 6
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.9e-36 Score=277.48 Aligned_cols=233 Identities=22% Similarity=0.367 Sum_probs=189.8
Q ss_pred HHHHHHHhCCCCCChhHHHHHHhhCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHhhhccccCCCccccccccccCCCcc
Q 019449 60 KVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQ-YAAWKTECQNIVPIIGSGKFITAAIVTDDGQSL 138 (341)
Q Consensus 60 ~l~~~~~~~GIp~~~R~~vW~~llg~~~~~~t~~~~~~~~~~~~~~-Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (341)
+-++.++|.|||+.+||+||.+..| ...+.|.+-....+.+..+. ...+-++-
T Consensus 292 rR~relWwQGiP~~VRGkvW~laIG-Nel~it~elfd~~la~Aker~ak~~aeq~------------------------- 345 (586)
T KOG2223|consen 292 RRVRELWWQGIPPSVRGKVWSLAIG-NELNITYELFDIALARAKEREAKSLAEQM------------------------- 345 (586)
T ss_pred HHHHHHHHccCChhhcchhhHhhhC-cccccCHHHHHHHHHHHHHHHHHHHHhhc-------------------------
Confidence 3488899999999999999999999 34455544333322221111 11111110
Q ss_pred CCCCCcCcCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCccCCCh-hhHHHHHHHHHHHhHhcCCCCcCCChHHH
Q 019449 139 QDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE-TNQAKLWDVLAIYSWVDNDIGYVQGMNDI 217 (341)
Q Consensus 139 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~-~~~~~L~~IL~~y~~~~p~igY~QGm~~i 217 (341)
.+...+....+.+|..|+.||||+..+|+.+ +-.+.|..||.||+.|.||+||+|||.+|
T Consensus 346 -------------------~~sa~~re~sv~~i~LDisrTfpsl~iFqk~GPy~d~L~~lL~AYt~yRpDvgYVqgmSFI 406 (586)
T KOG2223|consen 346 -------------------SNSAADREASVELIKLDISRTFPSLSIFQKGGPYHDDLHSLLGAYTCYRPDVGYVQGMSFI 406 (586)
T ss_pred -------------------ccchhhhhcchhheeechhccCcceeeeccCCchHHHHHHHhhhheeecCccccccchHHH
Confidence 0112233467889999999999999999865 77899999999999999999999999999
Q ss_pred HHHHHhhhhchhHHHHHHHHHHHHH-HhhhccCCChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCCchHHHHHHHHHc
Q 019449 218 CSPMIVLLENEADAFWCFEHTMRRL-RENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLF 296 (341)
Q Consensus 218 ~a~ll~~~~~E~~aF~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~f~~~W~~~lF 296 (341)
+|+|++.+ ++++||.||.+|+++- ..-|+.. +-..+..++..|+..+++..|+|+.||.++++.|..|++.|+.++|
T Consensus 407 aAvLllnm-d~~~AFiafANLLdkp~q~Aff~~-d~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftly 484 (586)
T KOG2223|consen 407 AAVLLLNM-DLADAFIAFANLLDKPCQQAFFRV-DHSSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLY 484 (586)
T ss_pred HHHHHHcC-CcHHHHHHHHHHhccHHHHHHHhc-CcHHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 99999998 8999999999999983 3333322 2346888999999999999999999999999999999999999999
Q ss_pred cccCCHHhHHHHHHHHHhccCchhHHHHHHHHHHHhHHHhhccc
Q 019449 297 RREFSFVDALYLWEILADITGNLDAKKACNEALKIQKKYLSKSK 340 (341)
Q Consensus 297 ~~~l~~~~v~riWD~l~~~~g~~~l~~~~~~~l~l~~~~ll~~~ 340 (341)
+..+|++.+.||||+++. +|...+++.++++|++++..|+.|.
T Consensus 485 skslpldlacRIwDvy~r-dgeeFlfr~~lgIlklyepkLl~mD 527 (586)
T KOG2223|consen 485 SKSLPLDLACRIWDVYCR-DGEEFLFRTALGILKLYEPKLLVMD 527 (586)
T ss_pred hccCChHHhhhhhheeee-cchHHHHHHHHHHHHHccchHhhhh
Confidence 999999999999999984 4999999999999999999999875
No 7
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=100.00 E-value=3.6e-35 Score=259.31 Aligned_cols=169 Identities=31% Similarity=0.540 Sum_probs=148.4
Q ss_pred HHHHHHhhccccCCCCCccCCChhhHHHHHHHHHHHhHhcCCCCcCCChHHHHHHHHhhhhchhHHHHHHHHHHHHHHhh
Q 019449 166 LGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLREN 245 (341)
Q Consensus 166 ~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~L~~IL~~y~~~~p~igY~QGm~~i~a~ll~~~~~E~~aF~~~~~l~~~~~~~ 245 (341)
+..++|++|+.||+++...+..+.+++.|.+||.+|+.++|++||+|||++|+++++.++.+|++|||||.++|....+.
T Consensus 45 ~~~~~I~~Dv~rt~~~~~~~~~~~~~~~l~~iL~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~ 124 (214)
T PF00566_consen 45 KIFEQIDKDVNRTFPNSFLFKNEQNQKSLERILSAYAKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLLNYYLPD 124 (214)
T ss_dssp TCHHHHHHHHCTSSTSCCCSTTHHHHHHHHHHHHHHHHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHHTHHGGG
T ss_pred hHHHHHHHhhhhhcccchhhhhcchHHHHHHHHHHhccccccccccchhhhhhhhhhhhcccccchhccccchhcccccc
Confidence 34789999999999977888889999999999999999999999999999999999988889999999999999443333
Q ss_pred hccCCChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCCchHHHHHHHHHccccCCHHhHHHHHHHHHhccCchh-HHHH
Q 019449 246 FRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEILADITGNLD-AKKA 324 (341)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~f~~~W~~~lF~~~l~~~~v~riWD~l~~~~g~~~-l~~~ 324 (341)
++ .++.+++...+..+..+++.++|+|++||++.|+++..|+.+|+.|+|++++|.+.++|+||+++ + |... ++++
T Consensus 125 ~~-~~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD~l~-~-g~~~~l~~~ 201 (214)
T PF00566_consen 125 FF-QPNFKGLQKILKIFEQLLKKHDPELYNHLKQLGVDPEIYAFPWFLTLFSRSLPFDDVLRLWDFLL-E-GYKFFLFFI 201 (214)
T ss_dssp GT-STTHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-GGHHHHHHHHHTTTTTTS-HHHHHHHHHHHH-H-CTTHHHHHH
T ss_pred cc-cccccccchhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHhhcCCcCCHHHHHHHHHHHH-c-CCCcHHHHH
Confidence 33 34467899999999999999999999999999999999999999999999999999999999555 4 5544 8899
Q ss_pred HHHHHHHhHHHhh
Q 019449 325 CNEALKIQKKYLS 337 (341)
Q Consensus 325 ~~~~l~l~~~~ll 337 (341)
++|+++.+|+.||
T Consensus 202 ~lail~~~~~~il 214 (214)
T PF00566_consen 202 ALAILKYLRDQIL 214 (214)
T ss_dssp HHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999987
No 8
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=8.5e-36 Score=273.18 Aligned_cols=276 Identities=27% Similarity=0.530 Sum_probs=220.9
Q ss_pred CCCCCCCccccccCCCC--CCCHHHHHH-hhccCCCcCH-HHHHHHHHhCCCCCChhHHHHHHhhCCCCCCCCHHHHHHH
Q 019449 23 ECQADVPKVRFKARAGK--TLSARRWHA-AFSEDGHLDI-AKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQI 98 (341)
Q Consensus 23 ~~~~~~p~~~~~~~~~~--~l~~~~W~~-~~~~~~~i~~-~~l~~~~~~~GIp~~~R~~vW~~llg~~~~~~t~~~~~~~ 98 (341)
.|.+++|+.+.+++.+. .++..-|.. .+++.|.|.. -+++|.++.+||..++|+.||++||.+|+..+|.++|..+
T Consensus 385 i~rpel~~se~hpde~~~kki~~n~~~~t~lne~gqiedd~~lrk~iffggid~sir~evwpfllk~ys~est~edr~al 464 (781)
T KOG2224|consen 385 ICRPELKKSEMHPDEGDVKKIGTNAFLGTHLNEKGQIEDDLKLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAAL 464 (781)
T ss_pred eecCCCCccccCCccchhhhhhHHHHHHhhhhhcccchhHHHhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHH
Confidence 37788899999988776 566677876 7777888844 4777888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-hhccccCCCccccccccccCCCccCCCCCcCcCCCCCCCCccchHHHHHHHHHHHHHhhcccc
Q 019449 99 RQQRRQQYAAWKTECQ-NIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVR 177 (341)
Q Consensus 99 ~~~~~~~Y~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~R 177 (341)
+..++++|+++..+-. .++| ++...-|+.+.-.++|||.|
T Consensus 465 ~~~krkey~eiqqkrlysmsp---------------------------------------eeh~~fwknvq~tvdkdvvr 505 (781)
T KOG2224|consen 465 MDIKRKEYEEIQQKRLYSMSP---------------------------------------EEHIAFWKNVQFTVDKDVVR 505 (781)
T ss_pred HHHHHHHHHHHHHHHhhcCCH---------------------------------------HHHHHHHhheEEEEecceee
Confidence 9999999999877632 3332 33444555566678999999
Q ss_pred CCCCCccCCCh--hhHHHHHHHHHHHhHhcCCCCcCCChHHHHHHHHhhhhchhHHHHHHHHHHHHHH------------
Q 019449 178 TDRSLVFYESE--TNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLR------------ 243 (341)
Q Consensus 178 t~~~~~~f~~~--~~~~~L~~IL~~y~~~~p~igY~QGm~~i~a~ll~~~~~E~~aF~~~~~l~~~~~------------ 243 (341)
|.+++++|..+ ++.+.++|||..|+.|||.+||.|||++++||.+.-..+|.++||||+.+|..+.
T Consensus 506 tdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqnesetfwcfvglmqgmsdlvapilaevld 585 (781)
T KOG2224|consen 506 TDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESETFWCFVGLMQGMSDLVAPILAEVLD 585 (781)
T ss_pred ccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccchhhhhhhhhccchhhhhhHHHhhhc
Confidence 99999999875 6789999999999999999999988888888887766667777777776665321
Q ss_pred --------------hhhccCCChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCCc--hHHHHHHHHHccccCCHHhHHH
Q 019449 244 --------------ENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEY--LFAFRMLMVLFRREFSFVDALY 307 (341)
Q Consensus 244 --------------~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~--~f~~~W~~~lF~~~l~~~~v~r 307 (341)
..|...+....+...+..++++++...|..|+||.++|-+.. +||.+|++.+|.++||--.++|
T Consensus 586 esdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~lellfchrwlllcfkref~ea~air 665 (781)
T KOG2224|consen 586 ESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGLELLFCHRWLLLCFKREFPEAEAIR 665 (781)
T ss_pred cccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhhcccHHHHHH
Confidence 223334555677888899999999999999999999885433 7999999999999999999999
Q ss_pred HHHHHHh-ccCchhHHHHHHHHHHHhHHHhh
Q 019449 308 LWEILAD-ITGNLDAKKACNEALKIQKKYLS 337 (341)
Q Consensus 308 iWD~l~~-~~g~~~l~~~~~~~l~l~~~~ll 337 (341)
+|+...+ +--.....++++|++.++-...+
T Consensus 666 iweacwa~y~tdyfhlficlaiiaiy~ddvi 696 (781)
T KOG2224|consen 666 IWEACWAHYLTDYFHLFICLAIIAIYADDVI 696 (781)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhhHHH
Confidence 9996543 21233344788888888766554
No 9
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-33 Score=273.24 Aligned_cols=319 Identities=43% Similarity=0.737 Sum_probs=247.6
Q ss_pred CCCCCCCCCCCCCccccccCCCCCCCHHHHHHhhccCCCcC-HHHHHHHHHhCCCCCChhHHHHHHhhCCCCCCCCHHHH
Q 019449 17 YYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLD-IAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEER 95 (341)
Q Consensus 17 ~~~~~~~~~~~~p~~~~~~~~~~~l~~~~W~~~~~~~~~i~-~~~l~~~~~~~GIp~~~R~~vW~~llg~~~~~~t~~~~ 95 (341)
....++.|.. .+........+.+++-++|...|..++... ..++++.+..+||+|.+|+.||.+|+|+|+.+.+.+++
T Consensus 25 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~l~~i~~~gi~psir~evw~fll~~y~~~~~~~~~ 103 (488)
T KOG2197|consen 25 VVDSREPCLS-QSRIWVLIKPGKTLKPEKWQANFDPDGRLSGFVKLLKLIILGGIDPSIRGEVWEFLLGCYDLDSTFEER 103 (488)
T ss_pred cccccccccc-cCCcceeeccccccchhhhhhccCCCccccchhhhheeeecCCCCCcccchhHHHHhcccCCCCchHHH
Confidence 3344444442 233555566677888999999999988875 77889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCC-ccccccccccCCCcc-----------------CCC--------------CC
Q 019449 96 NQIRQQRRQQYAAWKTECQNIVPIIGSG-KFITAAIVTDDGQSL-----------------QDS--------------NR 143 (341)
Q Consensus 96 ~~~~~~~~~~Y~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------------~~p--------------~~ 143 (341)
..++..++..|..+...|..+....++. ....+....+.+.|. .+. .+
T Consensus 104 ~~~r~~~~~~~~~l~~~c~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~ 183 (488)
T KOG2197|consen 104 NQLRVARRPQYNELLLVCQMMKSTVGNGLSYVVSSVVSDNRSPSLTLEEYNSNAMREGRLDESVHQRERIFSGGLSKSLR 183 (488)
T ss_pred HHHHhhcccchHHHHHHcchhhhhhccccceeeeEEeecCCCCcchhhhhhhhhhhccccccchhhhheecccccccchh
Confidence 9999999999999999998887765555 333333333333321 000 00
Q ss_pred c------CcCCCCCCCCc----------cchHHHHHH--------------HHHHHHHhhccccCCCCCccCCChhh--H
Q 019449 144 D------SLDQGWHVDGA----------ISDKKVLQW--------------MLGLHQIGLDVVRTDRSLVFYESETN--Q 191 (341)
Q Consensus 144 ~------~~~~~~~~~~~----------~~~~~~~~~--------------~~~~~~I~~Dv~Rt~~~~~~f~~~~~--~ 191 (341)
. ..-..+..... .......+| ......|.+||.||.+.+.++....+ .
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~qW~~~~~~~~~~~~~~~~~~~~i~~dv~rtDr~~~~~~~~~n~~~ 263 (488)
T KOG2197|consen 184 AEVWKFLLDYSPWDSTTRERVSLRKLTDEYFRLKLQWSSTSPEQSPESEGYLERKSRIEKDVGRTDRSLEFYEGEENPHL 263 (488)
T ss_pred hhhhhhhhcccCcccccccccccccccccHhhhhhhheeccccccccccchhhhhhhhhhhccccchhhhhhhcccccCH
Confidence 0 00001111110 000111112 23345689999999999999988777 9
Q ss_pred HHHHHHHHHHhHhcCCCCcCCChHHHHHHHHhhhhchhHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhhCH
Q 019449 192 AKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDP 271 (341)
Q Consensus 192 ~~L~~IL~~y~~~~p~igY~QGm~~i~a~ll~~~~~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P 271 (341)
..|..||.+|+.+++++||||||+++.+|++.++.+|.+|||||+.+|+++..+|..+. .++...+..+..+++..||
T Consensus 264 ~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de~~aFwcFv~fm~~~~~nF~~d~--~~~~~Ql~~~~~li~~~dp 341 (488)
T KOG2197|consen 264 ARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDEVEAFWCFVGFMDRLRHNFRIDQ--SGMQTQLAQLSSLIQELDP 341 (488)
T ss_pred HHHHHHHhhcccccCccccccCchhhcCcceeeecCchHHHHHHHHHHHHHhhcCcccc--ccHHHHhhhhhhhccccCH
Confidence 99999999999999999999999999999999999999999999999999999998664 4899999999999999999
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHccccCCHHhHHHHHHHHHhccCchhH-HHHHHHHHHHhHHHhhc
Q 019449 272 KLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEILADITGNLDA-KKACNEALKIQKKYLSK 338 (341)
Q Consensus 272 ~L~~hl~~~~i~~~~f~~~W~~~lF~~~l~~~~v~riWD~l~~~~g~~~l-~~~~~~~l~l~~~~ll~ 338 (341)
.+|+||+..+.+...|+++|++.+|.++|.+++++++|+++....+...+ .+.+.++|....+.|+.
T Consensus 342 ~l~~hLe~~d~~~~~f~fr~l~v~frrEf~~ed~l~LWEvlw~~~~~~~f~~~~~~~~l~~~~~~l~~ 409 (488)
T KOG2197|consen 342 RLYQHLEKLDAGDLFFCFRMLLVPFRREFEFEDSLRLWEVLWTDLPSPHFHLYVAPAILNKDPQTLME 409 (488)
T ss_pred HHHhhccccCCCccceeeehhhcccccccccccHHHHHHHHHhcCccchHHHHHHHhhhhcchHHHHh
Confidence 99999999999999999999999999999999999999988654444433 37777777765555543
No 10
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=8.6e-32 Score=249.38 Aligned_cols=222 Identities=22% Similarity=0.386 Sum_probs=191.3
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCccccccccccCCCc
Q 019449 58 IAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQS 137 (341)
Q Consensus 58 ~~~l~~~~~~~GIp~~~R~~vW~~llg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (341)
.+++...+-.||||+.+|+.+|+.|.|... ..+.....|++..++|-.-.
T Consensus 159 tdk~~~llkeggiphslr~~lw~rlsga~~----------kkk~ae~sy~~ilk~~andk-------------------- 208 (848)
T KOG2222|consen 159 TDKFEELLKEGGIPHSLRAFLWMRLSGALA----------KKKDAETSYEDILKACANDK-------------------- 208 (848)
T ss_pred hHHHHHHHHcCCCCcchhHHHHHHhhhhhh----------hhccccccHHHHHHHhcccc--------------------
Confidence 455444555677999999999999999742 22334467888888763200
Q ss_pred cCCCCCcCcCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCccCCC--hhhHHHHHHHHHHHhHhcCCCCcCCChH
Q 019449 138 LQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYES--ETNQAKLWDVLAIYSWVDNDIGYVQGMN 215 (341)
Q Consensus 138 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~--~~~~~~L~~IL~~y~~~~p~igY~QGm~ 215 (341)
| .+-.||++|+-|+.|++..|.. .++.+.|+|||++.++..|++||||||.
T Consensus 209 ---~------------------------~~~~qiekdllr~lpnn~cf~k~n~~gi~~lrrilk~ia~ifpdigycqg~g 261 (848)
T KOG2222|consen 209 ---L------------------------MIGKQIEKDLLRILPNNACFSKKNGEGIEALRRILKCIAFIFPDIGYCQGMG 261 (848)
T ss_pred ---c------------------------chhHHHHHHHHHhCCCcceeeCCCCcchHHHHHHHhhheeecCCcccccCcc
Confidence 0 2457999999999999999976 4789999999999999999999999999
Q ss_pred HHHHHHHhhhhchhHHHHHHHHHHHHHH-hhhccCCChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCCchHHHHHHHH
Q 019449 216 DICSPMIVLLENEADAFWCFEHTMRRLR-ENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMV 294 (341)
Q Consensus 216 ~i~a~ll~~~~~E~~aF~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~f~~~W~~~ 294 (341)
-|+|.+|+.+ .|+.|||++..+++.+. ++|+ .+++-|++..-++...+++-+.|.|-..|+.++|+.++....||+|
T Consensus 262 viva~lllf~-~ee~afwmmaaiiedilp~nfy-sqtllgiqaderv~~~li~~~l~~ldeal~~~dielslitl~w~lt 339 (848)
T KOG2222|consen 262 VIVACLLLFC-EEENAFWMMAAIIEDILPANFY-SQTLLGIQADERVMHHLIACHLPDLDEALEDHDIELSLITLHWFLT 339 (848)
T ss_pred HHHHHHHHHh-cchhHHHHHHHHHHHhcCchhh-hhhHhccchhHHHHHHHHHhccCchhHHHHhccceeeehHHHHHHH
Confidence 9999998888 78899999999999864 5666 4568899999999999999999999999999999999999999999
Q ss_pred HccccCCHHhHHHHHHHHHhccCchhHHHHHHHHHHHhHHHhhcc
Q 019449 295 LFRREFSFVDALYLWEILADITGNLDAKKACNEALKIQKKYLSKS 339 (341)
Q Consensus 295 lF~~~l~~~~v~riWD~l~~~~g~~~l~~~~~~~l~l~~~~ll~~ 339 (341)
+|.+++.....+||||.+|.+ |...++++.+.+|++.++.|..+
T Consensus 340 lf~nv~~~killriwd~~fy~-g~i~ifql~i~ilkmkeqdi~~i 383 (848)
T KOG2222|consen 340 LFANVFHMKILLRIWDFFFYE-GGINIFQLIIGILKMKEQDIKEI 383 (848)
T ss_pred HHHHHHHHHHHHHHHHhheec-CcchhHHHHHHHHHhhHHHHHHH
Confidence 999999999999999999966 89999999999999999988754
No 11
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=99.96 E-value=3.1e-29 Score=241.00 Aligned_cols=235 Identities=19% Similarity=0.320 Sum_probs=203.5
Q ss_pred HHHHhhccCCC-cCHH--HHHHHHHhCCCCCChhHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 019449 45 RWHAAFSEDGH-LDIA--KVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIG 121 (341)
Q Consensus 45 ~W~~~~~~~~~-i~~~--~l~~~~~~~GIp~~~R~~vW~~llg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~ 121 (341)
.|.+.+.++|. ++.. ..++++.+.|+|...|+++|.++.|.. ..+..+...|.++.+....
T Consensus 175 ~W~~~f~~~G~~~~~~qt~~~~Klv~~gipe~~rgeiW~l~sGav----------~~~l~~~Geygkll~~~~G------ 238 (671)
T KOG4347|consen 175 FWKKYFIKDGPNMNQIQTILLRKLLYNGFPEDPRGEIWYLASGAV----------ASLLLNPGEYGKLLHSVTG------ 238 (671)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhcCCChHHHHHHhhhHHH----------HHhhcCcHHhhhhhhcccC------
Confidence 59999988764 4432 347788888999999999999999962 3445567788877665311
Q ss_pred CCccccccccccCCCccCCCCCcCcCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCccCCChhhHHHHHHHHHHH
Q 019449 122 SGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIY 201 (341)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~L~~IL~~y 201 (341)
+. .-..+.|++|+.|..|+|+-|+.+.+...|+|||.||
T Consensus 239 -------------------~~----------------------~~a~eEIE~Dl~rsLpEhpA~Q~e~gi~aLR~vL~Ay 277 (671)
T KOG4347|consen 239 -------------------KR----------------------SVATEEIEPDLGRSLPEHPAFQSEPGIAALRRVLTAY 277 (671)
T ss_pred -------------------Cc----------------------ccccccccCCCCCCCCcchhhhCCCchhhHHHHHHhh
Confidence 00 1345679999999999999999999999999999999
Q ss_pred hHhcCCCCcCCChHHHHHHHHhhhhchhHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhhCHHHHHHHHhCC
Q 019449 202 SWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLD 281 (341)
Q Consensus 202 ~~~~p~igY~QGm~~i~a~ll~~~~~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~ 281 (341)
++.||+|||||-||-+++.+++.+ .|+.|||+++.+.+.+.+.|+. ....|...++.+++.+++...|.|+.|+..+|
T Consensus 278 a~~Np~vGYcQaMNIV~s~lll~~-~EEeafwll~~lce~~ip~yys-~~vvGtliDQ~vfe~lve~~lP~l~~~~~~l~ 355 (671)
T KOG4347|consen 278 AWSNPEVGYCQAMNIVGSELLLFC-KEEEAFWLLSKLCEIYIPDYYS-KTVVGTLIDQSVFEELVEDTLPVLGEHLAVLG 355 (671)
T ss_pred hccCCchhHHHHHHHHHHhhhhhh-ccchHHHHHHHHHHHhcccccc-hhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhc
Confidence 999999999999999999988887 7999999999999998888874 45778899999999999999999999999999
Q ss_pred CCCchHHHHHHHHHccccCCHHhHHHHHHHHHhccCchhHHHHHHHHHHHhHHHhhccc
Q 019449 282 GGEYLFAFRMLMVLFRREFSFVDALYLWEILADITGNLDAKKACNEALKIQKKYLSKSK 340 (341)
Q Consensus 282 i~~~~f~~~W~~~lF~~~l~~~~v~riWD~l~~~~g~~~l~~~~~~~l~l~~~~ll~~~ 340 (341)
...+...+||+++|...+|++..+||-|++|.. |..+++.+++++++...+.|++..
T Consensus 356 -~l~~Vsl~WFlslFls~m~le~a~~ilD~FF~e-G~rvlFqiaLail~~N~~~il~~~ 412 (671)
T KOG4347|consen 356 -QLSTVSLSWFLSLFLSLMPLEYAVRILDCFFYE-GPRVLFQIALAILKQNAERILSAT 412 (671)
T ss_pred -ccceEeeHHHHHHHHHHcchHHHHHHHhhhhhc-ccHHHHHHHHHHHHhhHHHhcccC
Confidence 566778999999999999999999999999954 999999999999999999998764
No 12
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.96 E-value=3.7e-28 Score=230.06 Aligned_cols=173 Identities=23% Similarity=0.264 Sum_probs=160.0
Q ss_pred HHHHHhhccccCCCCCccCCChhhHHHHHHHHHHHhHhcCCCCcCCChHHHHHHHHhhh-hchhHHHHHHHHHHHHHHhh
Q 019449 167 GLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLL-ENEADAFWCFEHTMRRLREN 245 (341)
Q Consensus 167 ~~~~I~~Dv~Rt~~~~~~f~~~~~~~~L~~IL~~y~~~~p~igY~QGm~~i~a~ll~~~-~~E~~aF~~~~~l~~~~~~~ 245 (341)
+.+||+.|++|+.......+++.+++.|+|+|.||+-++|...|.||+..+|+||++.. ++|..||-|+..++-++..+
T Consensus 390 tdrqievdiprchQyd~~lsSp~~~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kycq~ 469 (725)
T KOG1093|consen 390 TDRQIEVDIPRCHQYDELLSSPKGHRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYCQH 469 (725)
T ss_pred chhhhhcccchhhhcccccCCHHHHHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999998865 68999999999999998888
Q ss_pred hccCCChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCCchHHHHHHHHHccccCCHHhHHHHHHHHHhccCchhHHHHH
Q 019449 246 FRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEILADITGNLDAKKAC 325 (341)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~f~~~W~~~lF~~~l~~~~v~riWD~l~~~~g~~~l~~~~ 325 (341)
|+..++...+...+.+|.+++..+||+|++||...|+.+++|+.+||+|+|+++||.+..+.+||-++. +++-....++
T Consensus 470 fflkdns~vikeyLs~f~~l~AfhDpeL~qHl~~~~f~~eLyAiPwflT~Fshvlpl~kil~LwD~lml-~~~SFplmi~ 548 (725)
T KOG1093|consen 470 FFLKDNSNVIKEYLSMFSQLLAFHDPELLQHLIDIGFIPELYAIPWFLTMFSHVLPLHKILHLWDNLML-GHSSFPLMIG 548 (725)
T ss_pred HHhhcCchhHHHHHHHHHHHHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc-CCCccHHHHH
Confidence 776666778999999999999999999999999999999999999999999999999999999998874 4677777999
Q ss_pred HHHHHHhHHHhhccc
Q 019449 326 NEALKIQKKYLSKSK 340 (341)
Q Consensus 326 ~~~l~l~~~~ll~~~ 340 (341)
+|++.-.|..|+..+
T Consensus 549 vAil~~lR~~LLa~n 563 (725)
T KOG1093|consen 549 VAILIQLRDPLLACN 563 (725)
T ss_pred HHHHHHhhhhhhhCC
Confidence 999999999998765
No 13
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.95 E-value=4.8e-27 Score=229.32 Aligned_cols=237 Identities=21% Similarity=0.344 Sum_probs=195.6
Q ss_pred HHHHHhhccCCCc----CHHHHHHHHHhCCCCCChhHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 019449 44 RRWHAAFSEDGHL----DIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPI 119 (341)
Q Consensus 44 ~~W~~~~~~~~~i----~~~~l~~~~~~~GIp~~~R~~vW~~llg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~ 119 (341)
..|++++.. +++ |.+. +-.....|+|.+-|+.+|.++.--+ . +.+..
T Consensus 550 ~~wek~~e~-~~~~~k~d~ed-~~~~l~~gvprsrrgeiwtflA~q~-----------~----------~~~~l------ 600 (948)
T KOG4436|consen 550 ETWEKILER-TRIKIKKDMED-LHSALRTGVPRSRRGEIWTFLAEQH-----------S----------LNHAL------ 600 (948)
T ss_pred HHHHHHHHH-hhhcccccHHH-HHHHHHccCchhhhHHHHHHHHHHH-----------H----------HhccC------
Confidence 679999887 333 5555 5556678999999999999987410 0 00000
Q ss_pred cCCCccccccccccCCCccCCCCCcCcCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCccCCCh--hhHHHHHHH
Q 019449 120 IGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE--TNQAKLWDV 197 (341)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~--~~~~~L~~I 197 (341)
+.++...+-...+...+.++..+.|..|+.||||+|++|+.. .++..+.|+
T Consensus 601 ---------------------------~~~kr~~~~p~~~llkqLte~qhAi~idlgrtfp~h~~~~~qlg~gqlsl~n~ 653 (948)
T KOG4436|consen 601 ---------------------------PDKKRPPDFPYKELLKQLTEQQHAILIDLGRTFPTHPYFSDQLGLGQLSLFNL 653 (948)
T ss_pred ---------------------------CcccCCCCCChHHHHHHHHHHHHHHHHhhccccCCCHHHHhhccccHHHHHHH
Confidence 000000011114556777888999999999999999999874 789999999
Q ss_pred HHHHhHhcCCCCcCCChHHHHHHHHhhhhchhHHHHHHHHHHHH--HHhhhccCCChhhHHHHHHHHHHHHHhhCHHHHH
Q 019449 198 LAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRR--LRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQ 275 (341)
Q Consensus 198 L~~y~~~~p~igY~QGm~~i~a~ll~~~~~E~~aF~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~ 275 (341)
|.+|+..+|++|||||+.++|+++|+.+ +|+.||-++..||.. ++..|. +++..++..++.+.++++.+.+.||+
T Consensus 654 Lkayslld~e~gycqg~~fv~gvlllh~-~e~~afellk~LM~~r~~r~qy~--pdm~~lq~qmyqLsrl~hd~hrdlyn 730 (948)
T KOG4436|consen 654 LKAYSLLDPEVGYCQGLSFVAGVLLLHM-SEENAFELLKFLMFDRGMRKQYR--PDMKKLQIQMYQLSRLLHDYHRDLYN 730 (948)
T ss_pred HHHhcccCccccccCcchhhhhhhHhhc-chhhHHHHHHHHHHHHhhHhhhc--hHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999 899999999999976 344554 44778899999999999999999999
Q ss_pred HHHhCCCCCchHHHHHHHHHccccCCHHhHHHHHHHHHhccCchhHHHHHHHHHHHhHHHhhccc
Q 019449 276 HLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEILADITGNLDAKKACNEALKIQKKYLSKSK 340 (341)
Q Consensus 276 hl~~~~i~~~~f~~~W~~~lF~~~l~~~~v~riWD~l~~~~g~~~l~~~~~~~l~l~~~~ll~~~ 340 (341)
|+++.+|.|..|+.+||+|+|+..||+..+.|++|++|.. |..+++.++.++|..++..|++..
T Consensus 731 ~le~~ei~pslyAapw~lt~fasQf~lGfvarvfd~~flq-~tevifK~a~~llsv~k~~l~e~d 794 (948)
T KOG4436|consen 731 HLEENEISPSLYAAPWFLTVFASQFPLGFVARVFDLIFLQ-GTEVIFKVALSLLSVHKQLLLEKD 794 (948)
T ss_pred HHHhcccChHHhhhHHHHHHHHhhCcchHHHHHHHHHHhh-ccchhhhhHHHHHHhhHHHHHhhh
Confidence 9999999999999999999999999999999999999965 888999999999999999888754
No 14
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.4e-26 Score=219.30 Aligned_cols=248 Identities=22% Similarity=0.313 Sum_probs=180.3
Q ss_pred CChhHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCccccccccc---cCCCccCCCCCcCcCC
Q 019449 72 PSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVT---DDGQSLQDSNRDSLDQ 148 (341)
Q Consensus 72 ~~~R~~vW~~llg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~ 148 (341)
...|+.+|+++||++|.+.+.+. .-....+..|..++..+. +.| +... ...-++++|.|...++
T Consensus 27 s~~Rgv~Wrl~L~vLp~~~ss~i--d~~~~~ra~~r~~r~~~L-~dP----------h~~k~~~s~d~~idnPLSq~~~S 93 (625)
T KOG1091|consen 27 SNLRGVRWRLLLGVLPSENSSWI--DNLRRLRANYRRLRRRLL-IDP----------HNLKENHSPDLPIDNPLSQNPQS 93 (625)
T ss_pred hhhhhHHHHHhheecCCCchhHH--HHHHHHhhhhhccccccc-cCc----------cccccccCCCcccCCccccCCCc
Confidence 46799999999999998876543 233455666766533321 111 1111 1133445666665555
Q ss_pred CCCCCCccchHHHHHHHHHHHHHhhccccCCCCC-ccCCChhhHHHHHHHHHHHhHhcCCCCcCCChHHHHHHHHhhhhc
Q 019449 149 GWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSL-VFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLEN 227 (341)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~-~~f~~~~~~~~L~~IL~~y~~~~p~igY~QGm~~i~a~ll~~~~~ 227 (341)
.| +......+..+.|+.||.||||.+ .+|+.+..+..|++||..|+..+|.++|-||||++.||++++...
T Consensus 94 ~W--------~rfF~d~EL~~~i~qDvsRtfPe~~~fFqs~~~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~ 165 (625)
T KOG1091|consen 94 VW--------NRFFRDAELEKTIDQDVSRTFPEHSLFFQSPEVQGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHV 165 (625)
T ss_pred hh--------hhhcCcHHHHHhhcchhhccCcchhhhhcCchhhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheeh
Confidence 55 345555688899999999999999 889999999999999999999999999999999999999987621
Q ss_pred -------------------hhH-----------HH--HHHHHHHHHHHhhh------------c-------cC---CChh
Q 019449 228 -------------------EAD-----------AF--WCFEHTMRRLRENF------------R-------TN---TGMI 253 (341)
Q Consensus 228 -------------------E~~-----------aF--~~~~~l~~~~~~~~------------~-------~~---~~~~ 253 (341)
|.+ ++ -+++.+|..-..+| + ++ ...+
T Consensus 166 D~q~l~h~se~~~~~l~f~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~ 245 (625)
T KOG1091|consen 166 DNQALLHVSESLFDKLGFEERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLP 245 (625)
T ss_pred hHHHHHHHHHhhhhhcCcchhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccch
Confidence 222 22 24444443311111 0 01 2344
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHhCCCCCchHHHHHHHHHccccCCHHhHHHHHH-HHHhccCchhHH-HHHHHHHHH
Q 019449 254 GVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWE-ILADITGNLDAK-KACNEALKI 331 (341)
Q Consensus 254 ~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~f~~~W~~~lF~~~l~~~~v~riWD-~l~~~~g~~~l~-~~~~~~l~l 331 (341)
.+......+..++...|+.|+.||.+.||.|++|..||...||.|+||+.+++.+|| +++.......++ ++++++|..
T Consensus 246 ~v~e~~~~~~~lL~~~D~~Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~pr~~Lv~~m~VsmLL~ 325 (625)
T KOG1091|consen 246 PVFEANFAQYHLLAKVDKSLHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSPRGILVACMFVSMLLY 325 (625)
T ss_pred hHHHHhhhhhhhhhhccHHHHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHH
Confidence 566677788999999999999999999999999999999999999999999999999 655433444444 788888888
Q ss_pred hHHHhhccc
Q 019449 332 QKKYLSKSK 340 (341)
Q Consensus 332 ~~~~ll~~~ 340 (341)
.+..|+..+
T Consensus 326 IRd~Llss~ 334 (625)
T KOG1091|consen 326 IRDSLLSSE 334 (625)
T ss_pred HHHHHHHhc
Confidence 888887653
No 15
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.92 E-value=1.1e-24 Score=208.03 Aligned_cols=249 Identities=24% Similarity=0.365 Sum_probs=194.1
Q ss_pred CCccccccCCCCCCCHHHHHHhhccCCC------------c--CHHHHHHHHHhCCCCCChhHHHHHHhhCCCCCCCCHH
Q 019449 28 VPKVRFKARAGKTLSARRWHAAFSEDGH------------L--DIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFE 93 (341)
Q Consensus 28 ~p~~~~~~~~~~~l~~~~W~~~~~~~~~------------i--~~~~l~~~~~~~GIp~~~R~~vW~~llg~~~~~~t~~ 93 (341)
.+...+.......+|.++|..+..+... + ...+ +..+...|||..+|..+|..+++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~gip~~~r~~~W~l~~~~-------- 161 (397)
T KOG1102|consen 91 SDERIFKDKPLLSLTLDLWDVKLLEGEQELTALSSSWLKVILRRPLK-LSRRVLVGIPDELRGLVWQLLLYA-------- 161 (397)
T ss_pred cccccccccccccccchhHHHHhhhhHHHHHHHHHHhhhhccccHHH-HHHHhhccccHHHHHHHHHHhccc--------
Confidence 3444455666677788888777665211 0 1233 556677799999999999999994
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCccccccccccCCCccCCCCCcCcCCCCCCCCccchHHHHHHHHHHHHHhh
Q 019449 94 ERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGL 173 (341)
Q Consensus 94 ~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 173 (341)
+.+.....-..+....... + .| ....+| +
T Consensus 162 ----~~~~~~~~~~~l~~~~~~~-~---------------------~~------------------------~~~~~~-~ 190 (397)
T KOG1102|consen 162 ----VEESLFDSLDELYRLQLDE-P---------------------EP------------------------HESEII-R 190 (397)
T ss_pred ----HhhhhhhhHHHHHHHhhcc-C---------------------CC------------------------chhHHH-h
Confidence 1111111111111110000 0 00 123467 9
Q ss_pred ccccCCCCCccCCC--hhhHHHHHHHHHHHhHhcCCCCcCCChHHHHHHHHhhhhchhHHHHHHHHHHHHHHhhhccCCC
Q 019449 174 DVVRTDRSLVFYES--ETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTG 251 (341)
Q Consensus 174 Dv~Rt~~~~~~f~~--~~~~~~L~~IL~~y~~~~p~igY~QGm~~i~a~ll~~~~~E~~aF~~~~~l~~~~~~~~~~~~~ 251 (341)
|+.||+|.+..|.. ..+++.|.+|+.+|+.++|++||||||..++++++.++ .|++|||+++.+|......+. ..+
T Consensus 191 d~~Rt~~~~~~f~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~-~ee~af~~lv~l~~~~~~~~~-~~~ 268 (397)
T KOG1102|consen 191 DLSRTFPAHLLFRKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYL-PEEEAFPLLVKLMKNYGLDLL-SPG 268 (397)
T ss_pred hccCcCcchhhhhhhcCcccccccccchhhcccCCCcccccchhhHhhhhhccC-chhhhhhhhhhhhhccchhcc-ccc
Confidence 99999999998876 36788999999999999999999999999999999998 699999999999987654444 566
Q ss_pred hhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCCchHHHHHHHHHccccCCHHhHHHHHHHHHhccCchhHHHHHHHHHHH
Q 019449 252 MIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEILADITGNLDAKKACNEALKI 331 (341)
Q Consensus 252 ~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~f~~~W~~~lF~~~l~~~~v~riWD~l~~~~g~~~l~~~~~~~l~l 331 (341)
+.++...+..++.+++...|.++.|+...+++..+|+.+|++|+|+..+|++.+.|+||+++.+ |...++.++.++++.
T Consensus 269 ~~~l~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~~-g~~i~~~~~~~l~~~ 347 (397)
T KOG1102|consen 269 FSGLQRSFRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKFPLELVLRIWDALFVE-GVSILFRFSLALLKH 347 (397)
T ss_pred CCchhhhHHHHHHHHHHhChhhhhhccccccccceeccceeeEeeeccccHHHHHHHhHHHHHh-chHHHHHHHHHHhhh
Confidence 7899999999999999999999999999999999999999999999999999999999999976 677778999999999
Q ss_pred hHHHhhcc
Q 019449 332 QKKYLSKS 339 (341)
Q Consensus 332 ~~~~ll~~ 339 (341)
..+.+++.
T Consensus 348 ~~~~~~~~ 355 (397)
T KOG1102|consen 348 KADDLLDL 355 (397)
T ss_pred hhHHHhhc
Confidence 99888765
No 16
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=99.90 E-value=1.3e-23 Score=188.41 Aligned_cols=169 Identities=20% Similarity=0.230 Sum_probs=141.8
Q ss_pred HHHHHhhccccCCCCCcc----CCChhhHHHHHHHHHHHhHhcCCCCcCCChHHHHHHHHhhhhchhHHHHHHHHHHHHH
Q 019449 167 GLHQIGLDVVRTDRSLVF----YESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRL 242 (341)
Q Consensus 167 ~~~~I~~Dv~Rt~~~~~~----f~~~~~~~~L~~IL~~y~~~~p~igY~QGm~~i~a~ll~~~~~E~~aF~~~~~l~~~~ 242 (341)
..+|+..|+.|++...+. -.....++.|..++......+|++.|.||.||||.+|++++ +|.+|+-++..+-...
T Consensus 96 d~nQV~LDv~RSl~rfppg~p~~~R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~-gE~~Al~l~E~L~~~~ 174 (395)
T KOG2595|consen 96 DYNQVILDVERSLGRFPPGIPKELRLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVV-GELEALSLMEELSTLH 174 (395)
T ss_pred ccceEEEehhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhh-hhHhhhHHHHHHHHHH
Confidence 357999999999865442 11124566777777777788999999999999999999999 7999999998888776
Q ss_pred HhhhccCCChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCCchHHHHHHHHHccccC-CHHhHHHHHHHHHhccCchhH
Q 019449 243 RENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREF-SFVDALYLWEILADITGNLDA 321 (341)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~f~~~W~~~lF~~~l-~~~~v~riWD~l~~~~g~~~l 321 (341)
..+|+ .+++.+....++.+..+++..+|+||+.|.+-++++ +|+..|.+|||+|.+ ++..++|++|++++. .+...
T Consensus 175 lrdfM-~~Tld~t~~qL~~i~~iIk~~nP~Ly~~l~~aevgt-lFaLsWllTWFaH~L~~~~~vvRlfD~Flas-~pl~p 251 (395)
T KOG2595|consen 175 LRDFM-LPTLDFTVRQLRLISPIIKEVNPELYQFLQSAEVGT-LFALSWLLTWFAHNLKDIRIVVRLFDFFLAS-HPLLP 251 (395)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHhhcChHHHHHHHhhcccc-eehhhHHHHHHhhcchhHHHHHHHHHHHHhc-Ccchh
Confidence 67776 456888999999999999999999999999988755 789999999999999 899999999999976 55666
Q ss_pred HHHHHHHHHHhHHHhhcc
Q 019449 322 KKACNEALKIQKKYLSKS 339 (341)
Q Consensus 322 ~~~~~~~l~l~~~~ll~~ 339 (341)
++++.+++...+.++++.
T Consensus 252 iyv~A~vvL~r~~eIl~~ 269 (395)
T KOG2595|consen 252 IYVYAAVVLYRRSEILKC 269 (395)
T ss_pred HHHHHHHhhhhHHHHHHH
Confidence 678888888888887764
No 17
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=9.9e-23 Score=172.45 Aligned_cols=188 Identities=21% Similarity=0.390 Sum_probs=149.1
Q ss_pred HHHHHhhccCCCc-C-HHHHHHHHHhCCCCCChhHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 019449 44 RRWHAAFSEDGHL-D-IAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIG 121 (341)
Q Consensus 44 ~~W~~~~~~~~~i-~-~~~l~~~~~~~GIp~~~R~~vW~~llg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~ 121 (341)
.+|..++++...- + ..+.++--++.|||+++|+..|++|.|...... +++..|..+.
T Consensus 76 skwL~mldnw~~~m~kk~~~ir~rcrkgippslr~Raw~ylsGa~~~~~----------~np~~~~~~~----------- 134 (267)
T KOG2221|consen 76 SKWLHMLDNWHEEMRKKQKKIRPRCRKGIPPSLRGRAWRYLSGAPSPPP----------KNPVVFDELG----------- 134 (267)
T ss_pred HHHHHHHHHHHHHHHhccccccchhhcCCCcccchhHHHhhcCCCCCCC----------CCcchhhhcc-----------
Confidence 4677776652211 1 112344456789999999999999999754322 1233333221
Q ss_pred CCccccccccccCCCccCCCCCcCcCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCccCCCh--hhHHHHHHHHH
Q 019449 122 SGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE--TNQAKLWDVLA 199 (341)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~--~~~~~L~~IL~ 199 (341)
....+| ...+-|.+|+.|-||.|.+|.+. .++..|+|+|.
T Consensus 135 --------------~~pG~p------------------------~t~e~i~kdl~rqfp~hemf~s~~k~gkqelfr~lk 176 (267)
T KOG2221|consen 135 --------------PAPGDP------------------------KTAEGIHKDLHRQFPFHEMFGSSGKTGKQELFRVLK 176 (267)
T ss_pred --------------CCCCCC------------------------cchhhhccccccCCCcccccccccccchHHHHHHHH
Confidence 111223 34678999999999999999764 67889999999
Q ss_pred HHhHhcCCCCcCCChHHHHHHHHhhhhchhHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhhCHHHHHHHHh
Q 019449 200 IYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLED 279 (341)
Q Consensus 200 ~y~~~~p~igY~QGm~~i~a~ll~~~~~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~ 279 (341)
+|..++|+.||||+-.-|+|+++..+ ++.+|||||+++.+++.+.|+. +.++.++.+-.++..|+++.+|..|.|+..
T Consensus 177 a~ti~~pe~g~cq~qapiaa~llmhm-p~rdaf~~~vqicekylqgy~~-sgleaiq~dg~il~~Llkk~~~p~~rH~~~ 254 (267)
T KOG2221|consen 177 AYTIYKPEEGYCQAQAPIAAVLLMHM-PARDAFWCFVQICEKYLQGYYS-SGLEAIQNDGGILEGLLKKASPPPYRHLGG 254 (267)
T ss_pred HHHHhCchhhhhhhhchHHHHHHhcc-cHHHHHHHHHHHHHHHcccccc-cchhhhhcccHHHHHHHHhcCCCCCccccc
Confidence 99999999999999999999999998 8899999999999998777663 457889999999999999999999999999
Q ss_pred CCCCCchHHHHHH
Q 019449 280 LDGGEYLFAFRML 292 (341)
Q Consensus 280 ~~i~~~~f~~~W~ 292 (341)
.++++.+|...||
T Consensus 255 ~kvdp~lym~ewF 267 (267)
T KOG2221|consen 255 DKVDPLLYMTEWF 267 (267)
T ss_pred CCCCHHHhhhccC
Confidence 9999999999997
No 18
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.56 E-value=2.9e-14 Score=140.58 Aligned_cols=221 Identities=18% Similarity=0.220 Sum_probs=176.2
Q ss_pred HHHHHHhCCCCCChhHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCccccccccccCCCccCC
Q 019449 61 VLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQD 140 (341)
Q Consensus 61 l~~~~~~~GIp~~~R~~vW~~llg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (341)
.++..+.+|+|+..|..+|+.|+..- +. + + ....+.|.++......
T Consensus 176 ~l~e~Ve~~~p~~frli~~qlLssat--d~---~--q--~~I~e~~sdl~~~s~~------------------------- 221 (948)
T KOG4436|consen 176 KLKELVEGGIPMHFRLIRWQLLSSAT--DR---E--Q--ALIFEDYSDLAPCSSQ------------------------- 221 (948)
T ss_pred hhHHHHhcCCchHHHHHHHHHhcccc--cc---h--h--hHHHHHHHHHhhhcch-------------------------
Confidence 37778899999999999999999852 11 1 1 1123455555443100
Q ss_pred CCCcCcCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCccCCCh-h--------hHHHHHHHHHHHhHhcCCCCcC
Q 019449 141 SNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE-T--------NQAKLWDVLAIYSWVDNDIGYV 211 (341)
Q Consensus 141 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~-~--------~~~~L~~IL~~y~~~~p~igY~ 211 (341)
- ++ ...+-.|..|+.||.|.|.+|+.. . .++.|+|+..+|+....+++||
T Consensus 222 -~---------------Ek-----~~~~~~Irrdi~~~~~eh~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifs 280 (948)
T KOG4436|consen 222 -Q---------------EK-----ELHIGIIRRDIERTYPEHYFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFS 280 (948)
T ss_pred -h---------------hh-----hHHHHHHHHHhhccCcceeeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 0 11 134567999999999999999874 2 5899999999999999999999
Q ss_pred CChHHHHHHHHhhhhchhHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhhCH-HHHHHHHhCCCCCchHHHH
Q 019449 212 QGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDP-KLHQHLEDLDGGEYLFAFR 290 (341)
Q Consensus 212 QGm~~i~a~ll~~~~~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P-~L~~hl~~~~i~~~~f~~~ 290 (341)
||=+.+++.+++++ +++.+|..++.+|...+..-...+.+..+..++..+....+...| .|+.|+.+.+++.+.+...
T Consensus 281 qGs~~m~Gll~l~~-~~E~assv~~~lm~~~rl~~l~kpe~~~l~~~~~q~e~~~q~~sp~dl~sH~~eq~~h~S~~~rs 359 (948)
T KOG4436|consen 281 QGSAFMVGLLLLQM-PVEEASSVKVQLMILYRLRELSKPEMEPLGLCMFQLECTNQDQSPMDLFSHFPEQHFHTSMYARS 359 (948)
T ss_pred cchHHHHHHHHhcC-cHHHHHHHHHHHHHhhcccccCCcccchhHHHHHhhcccccccchhHHhhcccccCCCccHHHHH
Confidence 99999999888887 899999999999988665444456676777788899999999999 9999999999999999999
Q ss_pred HHHHHccccCCHHhHHHHHHHHHhccCchhHHHHHHHHH-HHhHHHhhc
Q 019449 291 MLMVLFRREFSFVDALYLWEILADITGNLDAKKACNEAL-KIQKKYLSK 338 (341)
Q Consensus 291 W~~~lF~~~l~~~~v~riWD~l~~~~g~~~l~~~~~~~l-~l~~~~ll~ 338 (341)
||++.|...+|+...-++.|.+... |-...++...+.+ ...+..+++
T Consensus 360 ~flt~~ltt~Pi~~a~r~~~~f~~e-gllk~fr~~ia~~~~~~d~~~~s 407 (948)
T KOG4436|consen 360 WFLTNFLTTFPIFMAARISDTFSSE-GLLKRFRDSIAYLHQLRDIELES 407 (948)
T ss_pred HHHHhhcccCchhhccccccccccc-cHHHHHhhhHHHHHHHhhhhhhc
Confidence 9999999999999999999998754 6666668888888 444444443
No 19
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=99.41 E-value=1.7e-12 Score=120.89 Aligned_cols=146 Identities=15% Similarity=0.218 Sum_probs=120.6
Q ss_pred hHHHHHHHHHHHhHhcCCCCcCCCh--HHHHHHHHhhhhchhHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHH
Q 019449 190 NQAKLWDVLAIYSWVDNDIGYVQGM--NDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIR 267 (341)
Q Consensus 190 ~~~~L~~IL~~y~~~~p~igY~QGm--~~i~a~ll~~~~~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 267 (341)
....|..++.-|+. +.++.|.... -.++-|++.+-.+-.+.|-||.++++++.|.-..... ..+-.|+-||+
T Consensus 91 vv~dlES~iTfYCK-~Rn~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPkdcrpkg-----~~Fh~FRLLlq 164 (669)
T KOG3636|consen 91 VVSDLESFITFYCK-KRNMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIPKDCRPKG-----QIFHLFRLLLQ 164 (669)
T ss_pred hhHhhhhHhhhhhh-ccCCcccccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccCCCCCCCC-----ccchHHHHHHH
Confidence 34467778877865 4556777644 3667777777668899999999999997655443322 23557888999
Q ss_pred hhCHHHHHHHHhCCCCCchHHHHHHHHHccccCCHHhHHHHHHHHHhccCchhHHHHHHHHHHHhHHHhhcccC
Q 019449 268 TIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEILADITGNLDAKKACNEALKIQKKYLSKSKK 341 (341)
Q Consensus 268 ~~~P~L~~hl~~~~i~~~~f~~~W~~~lF~~~l~~~~v~riWD~l~~~~g~~~l~~~~~~~l~l~~~~ll~~~~ 341 (341)
.++|+|.+||..+.|.|.+|+..||-++|+...+.+.+.-+||.++....++.+++.++++|.-.++.||++++
T Consensus 165 YHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vffLaliiLiNake~ILq~~s 238 (669)
T KOG3636|consen 165 YHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLVFFLALIILINAKEEILQVKS 238 (669)
T ss_pred hcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehHHHHHHHhcccHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999998878888889999999999999999864
No 20
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=99.22 E-value=4.6e-13 Score=125.89 Aligned_cols=219 Identities=25% Similarity=0.364 Sum_probs=165.1
Q ss_pred cccccCCCCCCCHHHHHHhhccCCCcCHHHHHHHHHhCCCCCChhHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 019449 31 VRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWK 110 (341)
Q Consensus 31 ~~~~~~~~~~l~~~~W~~~~~~~~~i~~~~l~~~~~~~GIp~~~R~~vW~~llg~~~~~~t~~~~~~~~~~~~~~Y~~l~ 110 (341)
+..++.+++.+|++.|+++..+ ..+..-++++..+++|+....|+.+|+.+++.+...+...+.+.....-...|....
T Consensus 521 pD~pcda~~glt~~~W~qy~~d-~t~~e~~~l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l 599 (813)
T KOG1648|consen 521 PDDPCDASAGLTEKFWKQYRAD-PTIEEWRVLEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNL 599 (813)
T ss_pred CCCCCCccccccHHHHHHHhcC-CchHHHHHHHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHH
Confidence 4456889999999999999775 467777789999999999999999999999988776655443333333445555444
Q ss_pred HHHhhhccccCCCccccccccccCCCccCCCCCcCcCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCccCCChhh
Q 019449 111 TECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETN 190 (341)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~ 190 (341)
-.++. -.++.|++|+.|..++..+|.+..+
T Consensus 600 ~~~~~--------------------------------------------------~~~~~~~kd~e~~~~~~~~fs~~~~ 629 (813)
T KOG1648|consen 600 ITLFR--------------------------------------------------ANLHRIDKDVERCDRNLMFFSNKDN 629 (813)
T ss_pred HHHHh--------------------------------------------------hheeeecchhhhCcchheeecCCcc
Confidence 33332 3467899999999999999999888
Q ss_pred HHHHHHHHHHHhHhcCCCCcCCChHHHHHHHHhhhhchhHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhhC
Q 019449 191 QAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTID 270 (341)
Q Consensus 191 ~~~L~~IL~~y~~~~p~igY~QGm~~i~a~ll~~~~~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 270 (341)
.+. +++..+|...|-+-||.|||.++.+|++..+++|+.+--||.-+|-.-+..|..- +++...+-.++ +++..+
T Consensus 630 les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s~~~~~q~~~~~q~---~~~~~~l~~~r-~~~v~~ 704 (813)
T KOG1648|consen 630 LES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFSLLMLRQRGKFPQR---PGMSKCLLNLR-LIQVVD 704 (813)
T ss_pred hhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCcHHHHHhcccCCCC---CCccccccccc-chhhhc
Confidence 887 8888999999999999999999999999999988888778888887766666432 34444433333 566666
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHccccCCHHhHHHHHH
Q 019449 271 PKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWE 310 (341)
Q Consensus 271 P~L~~hl~~~~i~~~~f~~~W~~~lF~~~l~~~~v~riWD 310 (341)
|-.. -+.. .+...++||+.-|.++++.+....+|.
T Consensus 705 ~l~s-~id~----~qa~~f~~~~~~~~~~~s~~~~~~~~~ 739 (813)
T KOG1648|consen 705 PLIS-DIDY----AQALSFRWFLLDFKRELSYECTYKVWE 739 (813)
T ss_pred chhc-chhh----hhhcceeeeccCcccccCCCCcceeeE
Confidence 6222 1111 123458999999999999988888887
No 21
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=1.1e-05 Score=72.36 Aligned_cols=146 Identities=11% Similarity=0.094 Sum_probs=103.6
Q ss_pred hhhHHHHHHHHHHHhHhcCCCCcCCChHHHHHHHHhhhhchhHHHHHHHHHHHHHH-hhhccCCChhhHHHHHHHHHHHH
Q 019449 188 ETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLR-ENFRTNTGMIGVQSQLSTLSQII 266 (341)
Q Consensus 188 ~~~~~~L~~IL~~y~~~~p~igY~QGm~~i~a~ll~~~~~E~~aF~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~ll 266 (341)
..+.-..+.||.+.++..|++++|..+..++|.++-..-+|+++|---++++.--- ..-..++++-.....+..|..++
T Consensus 108 argegavrkilKOGanqfpdisfcpalpavvalllhysideaecfekacrilacndpgrrlidqsflafesscmtfgdlv 187 (559)
T KOG2801|consen 108 ARGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILACNDPGRRLIDQSFLAFESSCMTFGDLV 187 (559)
T ss_pred CcCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHHHHhheeeeecCcchhhhhhHHHHHHhhhhhHHHHH
Confidence 34555788999999999999999999999999888777789988876555543210 00111233444555666777777
Q ss_pred HhhCHHHHHHHHhCCCCCchHHHHHHHHHccccCCHHhHHHHHHHHHhccCchhHHHHHHHHHHHhHHH
Q 019449 267 RTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEILADITGNLDAKKACNEALKIQKKY 335 (341)
Q Consensus 267 ~~~~P~L~~hl~~~~i~~~~f~~~W~~~lF~~~l~~~~v~riWD~l~~~~g~~~l~~~~~~~l~l~~~~ 335 (341)
.+..-.-++.+....-+.......|-..+| .++|+--..|++|+++-+ |..++.++++++|+.+.+-
T Consensus 188 nkycqaahklmvavsedvlqvyadwqrwlf-gelplcyfarvfdvflve-gykvlyrvalailkffhkv 254 (559)
T KOG2801|consen 188 NKYCQAAHKLMVAVSEDVLQVYADWQRWLF-GELPLCYFARVFDVFLVE-GYKVLYRVALAILKFFHKV 254 (559)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-ccchHHHHHHHhhheeec-chHHHHHHHHHHHHHHHHh
Confidence 777666655555432223334456655554 689999999999999855 9999999999999998763
No 22
>PF14961 BROMI: Broad-minded protein
Probab=94.75 E-value=0.59 Score=50.26 Aligned_cols=144 Identities=12% Similarity=0.068 Sum_probs=95.2
Q ss_pred HHHHHHHHhHhcCCCCcCCChHHHHHHHHhhhhc-hhHHHHHHHHHHHHHHhhhc------c-----C----CChh-hHH
Q 019449 194 LWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLEN-EADAFWCFEHTMRRLRENFR------T-----N----TGMI-GVQ 256 (341)
Q Consensus 194 L~~IL~~y~~~~p~igY~QGm~~i~a~ll~~~~~-E~~aF~~~~~l~~~~~~~~~------~-----~----~~~~-~~~ 256 (341)
-.+|+..|..+.+.-+| .|..-.++.+++++.. -+.+.-.+.+|-..+...|. . . .+.+ -..
T Consensus 1086 ~l~~~~~~~~~~~~~~y-~g~DWFvstvfli~~Gd~e~~~~fL~~fS~ll~SaflW~pRlh~s~~l~~~~~~s~i~p~~~ 1164 (1296)
T PF14961_consen 1086 SLHILFEFIHFCLQGSY-PGHDWFVSTVFLIMLGDKERSLQFLQRFSRLLTSAFLWPPRLHASIHLPVDTAESGIHPVYF 1164 (1296)
T ss_pred hhHHHhhhhcccCCCCC-CCchhHHHHHHHHHcCChhHhHHHHHHHHHHHHHhHhccccccccccCCchhhhcCCCchhh
Confidence 33455555555554344 4777666666666644 33344333333322211110 0 0 1111 112
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHhCCCCCchHHHHHHHHHccccCCHHhHHHHHHHHHhccCchhHHHHHHHHHHHhHHHh
Q 019449 257 SQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEILADITGNLDAKKACNEALKIQKKYL 336 (341)
Q Consensus 257 ~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~f~~~W~~~lF~~~l~~~~v~riWD~l~~~~g~~~l~~~~~~~l~l~~~~l 336 (341)
..+..++.+|+...|.++.-|...|..+...|.+|+.-+|=+-+++..+..--=+..-. |.-.-+++++|+++..+..|
T Consensus 1165 ~~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~-G~dyqvY~~VailkHlq~~i 1243 (1296)
T PF14961_consen 1165 CSCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILY-GPDYQVYICVAILKHLQPEI 1243 (1296)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhc-CccceeehhHHHHHHhhHHH
Confidence 35678999999999999999999999999999999999999999998776655543323 56666699999999999999
Q ss_pred hcc
Q 019449 337 SKS 339 (341)
Q Consensus 337 l~~ 339 (341)
|+.
T Consensus 1244 lq~ 1246 (1296)
T PF14961_consen 1244 LQH 1246 (1296)
T ss_pred HHh
Confidence 864
No 23
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=84.78 E-value=0.33 Score=46.33 Aligned_cols=33 Identities=39% Similarity=0.976 Sum_probs=31.1
Q ss_pred CCcCCChHHHHHHHHhhhhchhHHHHHHHHHHH
Q 019449 208 IGYVQGMNDICSPMIVLLENEADAFWCFEHTMR 240 (341)
Q Consensus 208 igY~QGm~~i~a~ll~~~~~E~~aF~~~~~l~~ 240 (341)
+|-.|||++++||+|.-..+|.++||||+.+|.
T Consensus 566 vglmqgmsdlvapilaevldesdtfwcfvglmq 598 (781)
T KOG2224|consen 566 VGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQ 598 (781)
T ss_pred hhhhccchhhhhhHHHhhhccccchhhhhhhhc
Confidence 678899999999999988899999999999997
No 24
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=79.65 E-value=0.95 Score=45.01 Aligned_cols=77 Identities=29% Similarity=0.475 Sum_probs=62.2
Q ss_pred CCHHHHHHhhccCCCcCHH-HHHHHHHhCCCCCChhHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 019449 41 LSARRWHAAFSEDGHLDIA-KVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVP 118 (341)
Q Consensus 41 l~~~~W~~~~~~~~~i~~~-~l~~~~~~~GIp~~~R~~vW~~llg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~ 118 (341)
++.++|.....+++.++.. ........+|+-+.+|+.+|+.++++++.+.+..++...... ...|...+.+|....+
T Consensus 148 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~qW~~~~~ 225 (488)
T KOG2197|consen 148 LTLEEYNSNAMREGRLDESVHQRERIFSGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKL-TDEYFRLKLQWSSTSP 225 (488)
T ss_pred chhhhhhhhhhhccccccchhhhheecccccccchhhhhhhhhhcccCcccccccccccccc-cccHhhhhhhheeccc
Confidence 7889999998887776422 223377788888899999999999999999999888877777 8899999999865443
No 25
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=41.38 E-value=1.9 Score=41.82 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=76.0
Q ss_pred HHHHhHhcCCCCcCCChHHHHHHHHhhhhchhHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhhCHHHHHHH
Q 019449 198 LAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHL 277 (341)
Q Consensus 198 L~~y~~~~p~igY~QGm~~i~a~ll~~~~~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl 277 (341)
|.+|..++++++|| +..+.+ .. +.+. .++...................+.-..|+
T Consensus 24 l~~~~~~~~~~~~~--~~~~~~---------------------~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (397)
T KOG1102|consen 24 LAAYEPYNPEVGYC--VLHITS---------------------KS-DGFQ-SSNERKLTELRDSPESIPDLSQSKRPGHV 78 (397)
T ss_pred ccCCCccccccccc--hhhhhh---------------------cc-cccc-cCCcccccccccCcccccccccccccccc
Confidence 88899999999999 555554 11 1111 01111222222233333444556666777
Q ss_pred HhCCCCCchHHHHHHHHHccccCCHHhHHHHHHHHHhccCchhHHHHHHHHHHHhHHHhhcc
Q 019449 278 EDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEILADITGNLDAKKACNEALKIQKKYLSKS 339 (341)
Q Consensus 278 ~~~~i~~~~f~~~W~~~lF~~~l~~~~v~riWD~l~~~~g~~~l~~~~~~~l~l~~~~ll~~ 339 (341)
...+ ........|..-.|........+.++||..... +...+..+.-..++++.+..+++
T Consensus 79 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l 138 (397)
T KOG1102|consen 79 DSSE-PTNELYPKSDERIFKDKPLLSLTLDLWDVKLLE-GEQELTALSSSWLKVILRRPLKL 138 (397)
T ss_pred cccc-cccccccccccccccccccccccchhHHHHhhh-hHHHHHHHHHHhhhhccccHHHH
Confidence 7776 666777888888899998999999999998755 77777788888888776555554
No 26
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=36.04 E-value=91 Score=20.89 Aligned_cols=40 Identities=18% Similarity=0.168 Sum_probs=32.9
Q ss_pred HHHHHHHhhCHHHHHHHHhCCCCCchHHHHHHHHHccccC
Q 019449 261 TLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREF 300 (341)
Q Consensus 261 ~~~~ll~~~~P~L~~hl~~~~i~~~~f~~~W~~~lF~~~l 300 (341)
.|.++--++.|+--..|++.||+-+.-...-++++|..+.
T Consensus 5 ~FmqIaMK~lPEak~~L~k~GIeLsme~~qP~m~L~~~VM 44 (56)
T PF10815_consen 5 EFMQIAMKYLPEAKEELDKKGIELSMEMLQPLMQLLTKVM 44 (56)
T ss_pred HHHHHHHHHhHHHHHHHHHcCccCCHHHHHHHHHHHHHHH
Confidence 3555666788998899999999999888889999988754
No 27
>KOG4631 consensus NADH:ubiquinone oxidoreductase, NDUFB3/B12 subunit [Energy production and conversion]
Probab=35.16 E-value=34 Score=25.56 Aligned_cols=27 Identities=15% Similarity=0.532 Sum_probs=22.2
Q ss_pred CHHHHHHHHHhCCC-CCChhHHHHHHhh
Q 019449 57 DIAKVLRRIQRGGI-HPSIKGLVWEFLL 83 (341)
Q Consensus 57 ~~~~l~~~~~~~GI-p~~~R~~vW~~ll 83 (341)
...++.+++.+.|+ +|.+|..||.+.=
T Consensus 24 qL~~~~k~La~~GLkDPW~RNevwrY~~ 51 (100)
T KOG4631|consen 24 QLETIQKKLAAKGLKDPWGRNEVWRYMG 51 (100)
T ss_pred cHHHHHHHHHHccccCchhcchhhhccC
Confidence 45666788888898 5899999999875
No 28
>PF13282 DUF4070: Domain of unknown function (DUF4070)
Probab=33.86 E-value=1e+02 Score=25.37 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=25.8
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHhhCCCCC
Q 019449 58 IAKVLRRIQRGGIHPSIKGLVWEFLLGCYDP 88 (341)
Q Consensus 58 ~~~l~~~~~~~GIp~~~R~~vW~~llg~~~~ 88 (341)
...+.+.+++.||-.+.|...|+.++...-.
T Consensus 83 l~al~~~~w~~Gi~~~~R~~fWk~l~~~~~~ 113 (146)
T PF13282_consen 83 LRALLRSIWRQGILGKYRRQFWKFLWWTLRR 113 (146)
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHHHH
Confidence 3457788899999999999999999986433
No 29
>PF13864 Enkurin: Calmodulin-binding
Probab=31.17 E-value=1.7e+02 Score=22.04 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019449 90 STFEERNQIRQQRRQQYAAWKTECQNI 116 (341)
Q Consensus 90 ~t~~~~~~~~~~~~~~Y~~l~~~~~~~ 116 (341)
.+.++|..++...+..+..+..+|..+
T Consensus 37 l~eeER~~lL~~Lk~~~~el~~ey~~l 63 (98)
T PF13864_consen 37 LSEEERQELLEGLKKNWDELNKEYQKL 63 (98)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 356899999999999999999999765
No 30
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=30.23 E-value=38 Score=19.10 Aligned_cols=14 Identities=36% Similarity=0.802 Sum_probs=10.2
Q ss_pred CcCCChHHHHHHHH
Q 019449 209 GYVQGMNDICSPMI 222 (341)
Q Consensus 209 gY~QGm~~i~a~ll 222 (341)
||.||+.+.+--.+
T Consensus 4 gyiqgipdflkgyl 17 (31)
T PF08109_consen 4 GYIQGIPDFLKGYL 17 (31)
T ss_pred ccccccHHHHHHHH
Confidence 79999887765433
No 31
>PRK10878 hypothetical protein; Provisional
Probab=23.83 E-value=1.1e+02 Score=22.00 Aligned_cols=29 Identities=14% Similarity=0.231 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHhCCCCC
Q 019449 256 QSQLSTLSQIIRTIDPKLHQHLEDLDGGE 284 (341)
Q Consensus 256 ~~~~~~~~~ll~~~~P~L~~hl~~~~i~~ 284 (341)
......|..||...||+||.++...+-.+
T Consensus 21 ~~e~~~Fe~LL~~~D~dL~~W~~g~~~p~ 49 (72)
T PRK10878 21 DDEKRIFIRLLECDDPDLFNWLMNHGKPA 49 (72)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCCCC
Confidence 35677899999999999999999866544
No 32
>PF13041 PPR_2: PPR repeat family
Probab=23.64 E-value=1.2e+02 Score=19.12 Aligned_cols=26 Identities=12% Similarity=0.177 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHcc
Q 019449 272 KLHQHLEDLDGGEYLFAFRMLMVLFR 297 (341)
Q Consensus 272 ~L~~hl~~~~i~~~~f~~~W~~~lF~ 297 (341)
++++.+.+.|+.|..+.+.-++..|+
T Consensus 24 ~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 24 KLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 47788888999999888877776654
No 33
>COG2938 Uncharacterized conserved protein [Function unknown]
Probab=22.29 E-value=3.5e+02 Score=20.48 Aligned_cols=36 Identities=11% Similarity=0.104 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHhCCCCCchHHHHHH
Q 019449 257 SQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRML 292 (341)
Q Consensus 257 ~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~f~~~W~ 292 (341)
..+..|..||...|++||.++...+-.+..+..+-+
T Consensus 47 ~el~~f~~LLe~~D~dL~~Wi~g~~~~~~~~~~~mv 82 (94)
T COG2938 47 EELDEFERLLECEDNDLFNWIMGHGEPPDAELTPMV 82 (94)
T ss_pred HHHHHHHHHHcCCcHHHHHHHhCCCCCCcHHHHHHH
Confidence 567789999999999999999988776665544433
No 34
>PF12854 PPR_1: PPR repeat
Probab=20.32 E-value=2e+02 Score=16.80 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=26.6
Q ss_pred CCCCchHHHHHHHHHccccCCHHhHHHHHHH
Q 019449 281 DGGEYLFAFRMLMVLFRREFSFVDALYLWEI 311 (341)
Q Consensus 281 ~i~~~~f~~~W~~~lF~~~l~~~~v~riWD~ 311 (341)
|+.|..+++.-++..|++.=.++.+.+++|-
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 6778888888899999998899999888874
Done!