Query 019449
Match_columns 341
No_of_seqs 188 out of 1607
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 16:15:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019449.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019449hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fkm_A Protein (GYP1P), ORF YO 100.0 1.2E-48 3.9E-53 374.6 26.5 226 43-316 8-261 (396)
2 2qfz_A TBC1 domain family memb 100.0 8.8E-49 3E-53 369.9 24.5 248 42-338 25-298 (345)
3 2qq8_A TBC1 domain family memb 100.0 9.8E-48 3.3E-52 360.9 22.9 258 42-340 20-281 (334)
4 3qye_A TBC1 domain family memb 100.0 9.5E-48 3.3E-52 360.9 12.6 240 42-340 29-276 (331)
5 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 1E-46 3.5E-51 350.8 16.3 231 43-340 5-242 (310)
6 4hl4_A TBC1 domain family memb 100.0 2.1E-43 7.2E-48 325.6 17.3 229 44-340 21-256 (292)
7 3qwl_A TBC1 domain family memb 100.0 5.1E-38 1.8E-42 288.0 11.1 220 44-341 27-256 (294)
8 3i5g_C Myosin catalytic light 25.5 72 0.0025 24.8 4.2 19 53-71 99-117 (159)
9 1dxs_A P53-like transcription 19.9 86 0.0029 21.9 3.0 24 62-85 41-64 (80)
10 2js3_A Uncharacterized protein 19.4 32 0.0011 24.0 0.7 11 209-219 17-27 (96)
No 1
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=1.2e-48 Score=374.59 Aligned_cols=226 Identities=27% Similarity=0.504 Sum_probs=199.7
Q ss_pred HHHHHHhhccCCCcCHHHHHHHHHhCCCCCChhHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 019449 43 ARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGS 122 (341)
Q Consensus 43 ~~~W~~~~~~~~~i~~~~l~~~~~~~GIp~~~R~~vW~~llg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~ 122 (341)
.++|.+++.+.+.++.++ +++++++|||+.+|+.||++|+|++|.+.+ +|..+++.++..|.++++++...
T Consensus 8 ~~kw~~lL~~~~~~d~~~-Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~~--~~~~~l~~~~~~Y~~l~~~~~~~------ 78 (396)
T 1fkm_A 8 ISKFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRKRKEYRDSLKHTFSD------ 78 (396)
T ss_dssp HHHHHHHHSSCSBCCHHH-HHHHHTTCCCGGGHHHHHHHHTTCSCSBGG--GHHHHHHHHHHHHHHHHHHTSSS------
T ss_pred HHHHHHHHcCCCCCCHHH-HHHHHHcCCCHHHHHHHHHHHHCCCCCChh--HHHHHHHHHHHHHHHHHHHHhhc------
Confidence 468999999876689888 666788899999999999999999998764 46677888999999999986320
Q ss_pred CccccccccccCCCccCCCCCcCcCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCccCCChhhHHHHHHHHHHHh
Q 019449 123 GKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYS 202 (341)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~L~~IL~~y~ 202 (341)
.++ ...+..+||++||.||+|++++|+.+.+++.|+|||.+|+
T Consensus 79 ----------------~~~---------------------~~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~L~rIL~aya 121 (396)
T 1fkm_A 79 ----------------QHS---------------------RDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWA 121 (396)
T ss_dssp ----------------SCS---------------------THHHHHHHHHHHGGGSSTTSGGGGSHHHHHHHHHHHHHHH
T ss_pred ----------------cCc---------------------ccHHHHHHHHHHhhhhCCCcccccCchHHHHHHHHHHHHH
Confidence 000 0125678999999999999999999999999999999999
Q ss_pred HhcCCCCcCCChHHHHHHHHhhhh------------------c----------hhHHHHHHHHHHHHHHhhhccCCChhh
Q 019449 203 WVDNDIGYVQGMNDICSPMIVLLE------------------N----------EADAFWCFEHTMRRLRENFRTNTGMIG 254 (341)
Q Consensus 203 ~~~p~igY~QGm~~i~a~ll~~~~------------------~----------E~~aF~~~~~l~~~~~~~~~~~~~~~~ 254 (341)
.+||++|||||||+|+|+|++++. + |++|||||+++|.++..+|.. ++++
T Consensus 122 ~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~--~~~~ 199 (396)
T 1fkm_A 122 IRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIH--GQPG 199 (396)
T ss_dssp HHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSST--TCHH
T ss_pred HHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cHHH
Confidence 999999999999999999998762 1 899999999999998877764 4679
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHhCCCCCchHHHHHHHHHccccCCHHhHHHHHHHHHhcc
Q 019449 255 VQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEILADIT 316 (341)
Q Consensus 255 ~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~f~~~W~~~lF~~~l~~~~v~riWD~l~~~~ 316 (341)
+...+..+..+|+..+|+||+||.+.|+.+.+|+++||+|+|+++||+++++||||.++.++
T Consensus 200 i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg 261 (396)
T 1fkm_A 200 ILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSET 261 (396)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999998764
No 2
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=8.8e-49 Score=369.89 Aligned_cols=248 Identities=22% Similarity=0.421 Sum_probs=214.0
Q ss_pred CHHHHHHhhccCCCcCHHHHHHHHHhCCCCCChhHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 019449 42 SARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIG 121 (341)
Q Consensus 42 ~~~~W~~~~~~~~~i~~~~l~~~~~~~GIp~~~R~~vW~~llg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~ 121 (341)
..++|.++++.. .++.++ +++++++|||+.+|+.||++++|++|.+. ++|...++.++..|..+++++.....
T Consensus 25 r~~kw~~~l~~~-~~d~~~-Lr~l~~~GiP~~~R~~vW~~llg~~p~~~--~~~~~~l~~~~~~Y~~l~~~~~~~~~--- 97 (345)
T 2qfz_A 25 RLDKFKQLLAGP-NTDLEE-LRRLSWSGIPKPVRPMTWKLLSGYLPANV--DRRPATLQRKQKEYFAFIEHYYDSRN--- 97 (345)
T ss_dssp HHHHHHHHHHCS-BCCHHH-HHHHHTTCCCGGGHHHHHHHHTTSSCSBG--GGHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHcCC-CCCHHH-HHHHHHCCCCHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHHHHHHHHHhhcCCC---
Confidence 457899999864 478888 66677899999999999999999998765 45667788899999999998642100
Q ss_pred CCccccccccccCCCccCCCCCcCcCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCccCCChhhHHHHHHHHHHH
Q 019449 122 SGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIY 201 (341)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~L~~IL~~y 201 (341)
+ ....+..+||++||.||+|+ ++|+.+.+++.|.|||.+|
T Consensus 98 -------------------~--------------------~~~~~~~~~I~~Dv~RT~p~-~~F~~~~~~~~L~rIL~~y 137 (345)
T 2qfz_A 98 -------------------D--------------------EVHQDTYRQIHIDIPRMSPE-ALILQPKVTEIFERILFIW 137 (345)
T ss_dssp ------------------------------------------CHHHHHHHHHHGGGCSCH-HHHTSHHHHHHHHHHHHHH
T ss_pred -------------------c--------------------cchHHHHHHHHHhCcccCCc-cccCCchHHHHHHHHHHHH
Confidence 0 00125678999999999999 9999999999999999999
Q ss_pred hHhcCCCCcCCChHHHHHHHHhhhh------------------------chhHHHHHHHHHHHHHHhhhccCCChhhHHH
Q 019449 202 SWVDNDIGYVQGMNDICSPMIVLLE------------------------NEADAFWCFEHTMRRLRENFRTNTGMIGVQS 257 (341)
Q Consensus 202 ~~~~p~igY~QGm~~i~a~ll~~~~------------------------~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~ 257 (341)
+.+||++|||||||+|||+|++++. +|++|||||+++|++++++|.. +++|+..
T Consensus 138 a~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y~~--~~~~i~~ 215 (345)
T 2qfz_A 138 AIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYTF--AQPGIQM 215 (345)
T ss_dssp HHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGSST--TCHHHHH
T ss_pred HHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHHHHHHcccccccc--CcHHHHH
Confidence 9999999999999999999998874 3899999999999998777753 4689999
Q ss_pred HHHHHHHHHHhhCHHHHHHHHhCCCCCchHHHHHHHHHccccCCHHhHHHHHHHHHhccCch--hHHHHHHHHHHHhHHH
Q 019449 258 QLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEILADITGNL--DAKKACNEALKIQKKY 335 (341)
Q Consensus 258 ~~~~~~~ll~~~~P~L~~hl~~~~i~~~~f~~~W~~~lF~~~l~~~~v~riWD~l~~~~g~~--~l~~~~~~~l~l~~~~ 335 (341)
.+..+..+|+..+|+||+||.+.|+++.+|+++||+|+|+++||+++++||||.++..+... .++++++|++..+++.
T Consensus 216 ~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ 295 (345)
T 2qfz_A 216 KVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKE 295 (345)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999763232 4678999999999999
Q ss_pred hhc
Q 019449 336 LSK 338 (341)
Q Consensus 336 ll~ 338 (341)
||+
T Consensus 296 ll~ 298 (345)
T 2qfz_A 296 ILE 298 (345)
T ss_dssp HHH
T ss_pred HHh
Confidence 985
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.8e-48 Score=360.86 Aligned_cols=258 Identities=21% Similarity=0.325 Sum_probs=203.5
Q ss_pred CHHHHH-HhhccCCC-cCHHHHHHHHHhCCCCCChhHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 019449 42 SARRWH-AAFSEDGH-LDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPI 119 (341)
Q Consensus 42 ~~~~W~-~~~~~~~~-i~~~~l~~~~~~~GIp~~~R~~vW~~llg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~ 119 (341)
...+|. +++.+.+. .+..+ +++++++|||+++|+.||++++|+. ...+.+.+....+..+..|..+.......
T Consensus 20 ~~~~W~~~il~~w~~~~~~~~-lr~l~~~GIP~~lR~~vW~~llg~~-~~~~~~~y~~ll~~~~~~~~~~~~~~~~~--- 94 (334)
T 2qq8_A 20 AVLTWNNEILPNWETMWCSRK-VRDLWWQGIPPSVRGKVWSLAIGNE-LNITHELFDICLARAKERWRSLSTGGSEV--- 94 (334)
T ss_dssp HHHHHHHTTGGGCC--CCCHH-HHHHHHTCCCHHHHHHHHHHHHCCT-TCCCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHhHHhccChHH-HHHHHHCCCCHHHHHHHHHHHhCCc-cccCHHHHHHHHHHHHHHHHHhccccccC---
Confidence 347898 57776444 45566 7788899999999999999999985 34566666666555555665543321100
Q ss_pred cCCCccccccccccCCCccCCCCCcCcCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCccCCCh-hhHHHHHHHH
Q 019449 120 IGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE-TNQAKLWDVL 198 (341)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~-~~~~~L~~IL 198 (341)
.++ +.|.+. ....+..+||++||.||+|++++|+.+ .+++.|+|||
T Consensus 95 -----------~~~-----d~~~~~-----------------~~~~~~~~~I~~Dv~RT~p~~~~F~~~~~~~~~L~rIL 141 (334)
T 2qq8_A 95 -----------ENE-----DAGFSA-----------------ADREASLELIKLDISRTFPNLCIFQQGGPYHDMLHSIL 141 (334)
T ss_dssp ---------------------------------------------CCHHHHHHHHHHTSSGGGCSSSTTSTTHHHHHHHH
T ss_pred -----------ccc-----cccccc-----------------ccchhHHHHHHHHHhhcCCCchhhcCCCchHHHHHHHH
Confidence 000 000000 001145789999999999999999875 6799999999
Q ss_pred HHHhHhcCCCCcCCChHHHHHHHHhhhhchhHHHHHHHHHHHHHHh-hhccCCChhhHHHHHHHHHHHHHhhCHHHHHHH
Q 019449 199 AIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRE-NFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHL 277 (341)
Q Consensus 199 ~~y~~~~p~igY~QGm~~i~a~ll~~~~~E~~aF~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl 277 (341)
.+|+.+||++|||||||+|||+|++++ +|++|||||+++|++..+ .|+ ..+.+++...+..+..+++..+|+||+||
T Consensus 142 ~aya~~~p~vgY~QGm~~iaa~lLl~~-~E~~aF~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~~P~L~~hL 219 (334)
T 2qq8_A 142 GAYTCYRPDVGYVQGMSFIAAVLILNL-DTADAFIAFSNLLNKPCQMAFF-RVDHGLMLTYFAAFEVFFEENLPKLFAHF 219 (334)
T ss_dssp HHHHHHCTTTCCCTTHHHHHHHHHHHS-CHHHHHHHHHHHHTSHHHHHHH-SSCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHhCCCCCcchhHHHHHHHHHhcC-CHHHHHHHHHHHHHhhhHHhcc-CCChHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence 999999999999999999999999887 899999999999987532 333 33467899999999999999999999999
Q ss_pred HhCCCCCchHHHHHHHHHccccCCHHhHHHHHHHHHhccCchhHHHHHHHHHHHhHHHhhccc
Q 019449 278 EDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEILADITGNLDAKKACNEALKIQKKYLSKSK 340 (341)
Q Consensus 278 ~~~~i~~~~f~~~W~~~lF~~~l~~~~v~riWD~l~~~~g~~~l~~~~~~~l~l~~~~ll~~~ 340 (341)
.+.|+.+.+|+++||+|+|++++|++.++||||+++.+ |...++++++|+++.+++.|++++
T Consensus 220 ~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~e-g~~~l~~valaiL~~~~~~Ll~~d 281 (334)
T 2qq8_A 220 KKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRD-GEEFLFRTALGILKLFEDILTKMD 281 (334)
T ss_dssp HHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHTHHHHHTCC
T ss_pred HHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999976 888899999999999999999864
No 4
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=9.5e-48 Score=360.89 Aligned_cols=240 Identities=22% Similarity=0.403 Sum_probs=200.1
Q ss_pred CHHHHHHhhccCCC----cCHHHHHHHHHhCCCCCChhHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 019449 42 SARRWHAAFSEDGH----LDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIV 117 (341)
Q Consensus 42 ~~~~W~~~~~~~~~----i~~~~l~~~~~~~GIp~~~R~~vW~~llg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~ 117 (341)
+.++|.+++.+.++ .+.++ +++++++|||+.+|+.||+.|+|+.+...+..+ .....+..|.++.++..
T Consensus 29 ~~~~W~~~l~~~~~~~~~~~~~~-l~~~~~~GIP~~lR~~vW~~Llg~~~~~~~~~~---~~~~~~~~Y~~l~~~~~--- 101 (331)
T 3qye_A 29 VTTVWEKMLSTPGRSKIKFDMEK-MHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPS---KQQPKDVPYKELLKQLT--- 101 (331)
T ss_dssp HHHHHHHHHTCTTGGGCCCCHHH-HHHHHHTCCCGGGHHHHHHHHHHHHHHHCCCCS---SSCCCCCCHHHHTTSCC---
T ss_pred HHHHHHHHhccCCCCcccCCHHH-HHHHHHcCCCHHHHHHHHHHHhCcchhhhcchh---hhhhchHHHHHHHHhcC---
Confidence 55789999988664 36777 666777899999999999999997431110000 00112234554433210
Q ss_pred cccCCCccccccccccCCCccCCCCCcCcCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCccCCCh--hhHHHHH
Q 019449 118 PIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE--TNQAKLW 195 (341)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~--~~~~~L~ 195 (341)
...++|++||.||+|++++|+.+ .+++.|+
T Consensus 102 ------------------------------------------------~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~ 133 (331)
T 3qye_A 102 ------------------------------------------------SQQHAILIDLGRTFPTHPYFSAQLGAGQLSLY 133 (331)
T ss_dssp ------------------------------------------------TTHHHHHHHHTTSSTTSTTTCSTTCHHHHHHH
T ss_pred ------------------------------------------------CchhHHHHhhcccCCCchhhcCCCcccHHHHH
Confidence 12579999999999999999876 7899999
Q ss_pred HHHHHHhHhcCCCCcCCChHHHHHHHHhhhhchhHHHHHHHHHHHHH--HhhhccCCChhhHHHHHHHHHHHHHhhCHHH
Q 019449 196 DVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRL--RENFRTNTGMIGVQSQLSTLSQIIRTIDPKL 273 (341)
Q Consensus 196 ~IL~~y~~~~p~igY~QGm~~i~a~ll~~~~~E~~aF~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L 273 (341)
|||.+|+.+||++|||||||+|||+|++++ +|++|||||+++|... +..|. ++++++...+..+..+++..+|+|
T Consensus 134 ~IL~ay~~~~p~igY~QGm~~i~a~ll~~~-~E~~aF~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~l~~ll~~~~p~L 210 (331)
T 3qye_A 134 NILKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEEAFKMLKFLMFDMGLRKQYR--PDMIILQIQMYQLSRLLHDYHRDL 210 (331)
T ss_dssp HHHHHHHHHCTTTSSCTTHHHHHHHHHTTS-CHHHHHHHHHHHHTTTCGGGGGS--TTCHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHCCCccccccHHHHHHHHHHHh-hHHHHHHHHHHHHHhcCchhcCC--CChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988 8999999999999874 44454 457899999999999999999999
Q ss_pred HHHHHhCCCCCchHHHHHHHHHccccCCHHhHHHHHHHHHhccCchhHHHHHHHHHHHhHHHhhccc
Q 019449 274 HQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEILADITGNLDAKKACNEALKIQKKYLSKSK 340 (341)
Q Consensus 274 ~~hl~~~~i~~~~f~~~W~~~lF~~~l~~~~v~riWD~l~~~~g~~~l~~~~~~~l~l~~~~ll~~~ 340 (341)
|+||.+.|+++.+|+++||+|+|++++|++.++||||+++.. |...++++++|+++.+++.|++++
T Consensus 211 ~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~-g~~~l~~valaiL~~~~~~ll~~~ 276 (331)
T 3qye_A 211 YNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQ-GTEVIFKVALSLLGSHKPLILQHE 276 (331)
T ss_dssp HHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHH-CTTHHHHHHHHHHHHTHHHHHTCC
T ss_pred HHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHC-CcHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999976 888899999999999999999863
No 5
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-46 Score=350.75 Aligned_cols=231 Identities=22% Similarity=0.363 Sum_probs=197.6
Q ss_pred HHHHHHhhccCCCc---CHHHHHHHHHhCCCCCChhHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 019449 43 ARRWHAAFSEDGHL---DIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPI 119 (341)
Q Consensus 43 ~~~W~~~~~~~~~i---~~~~l~~~~~~~GIp~~~R~~vW~~llg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~ 119 (341)
.++|.+++.+.+.. +..+ +++++++|||+.+|+.||+.++|+.+. ......|..+.++.
T Consensus 5 ~~~W~~~~~~w~~~~~~~~~~-l~~l~~~GIP~~lR~~vW~~llg~~~~-----------~~~~~~Y~~l~~~~------ 66 (310)
T 3hzj_A 5 LYSWGELLGKWHSNLGARPKG-LSTLVKSGVPEALRAEVWQLLAGCHDN-----------QAMLDRYRILITKD------ 66 (310)
T ss_dssp -CCHHHHHHHHHTSTTSCCTT-HHHHHHHCCCGGGHHHHHHHHTTCCCC-----------HHHHHHHHHHTTSC------
T ss_pred HHHHHHHHHHHhhhcccCHHH-HHHHHHCCCCHHHHHHHHHHHHCCCcc-----------hhHHHHHHHHHhcc------
Confidence 46798888764322 3445 777778899999999999999998653 12335676553320
Q ss_pred cCCCccccccccccCCCccCCCCCcCcCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCccCCCh--hhHHHHHHH
Q 019449 120 IGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE--TNQAKLWDV 197 (341)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~--~~~~~L~~I 197 (341)
. ...++|++||.||+|++++|+.+ .+++.|+||
T Consensus 67 --------------------~-------------------------~~~~~I~~Dv~Rt~p~~~~f~~~~~~~~~~L~~I 101 (310)
T 3hzj_A 67 --------------------S-------------------------AQESVITRDIHRTFPAHDYFKDTGGDGQESLYKI 101 (310)
T ss_dssp --------------------C-------------------------TTHHHHHHHHTTSSTTSTTTSSTTSHHHHHHHHH
T ss_pred --------------------C-------------------------CcHHHHHHHHHhhCCCchhhcCCCchhHHHHHHH
Confidence 0 23579999999999999999876 689999999
Q ss_pred HHHHhHhcCCCCcCCChHHHHHHHHhhhhchhHHHHHHHHHHHH--HHhhhccCCChhhHHHHHHHHHHHHHhhCHHHHH
Q 019449 198 LAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRR--LRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQ 275 (341)
Q Consensus 198 L~~y~~~~p~igY~QGm~~i~a~ll~~~~~E~~aF~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~ 275 (341)
|.+|+.+||++|||||||+|||+|++++ +|++|||||+++|.+ ++..|. ++++++...+..+..+++..+|+||+
T Consensus 102 L~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~l~~ll~~~~p~L~~ 178 (310)
T 3hzj_A 102 CKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCVLVKIMYDYGLRDLYR--NNFEDLHCKFYQLERLMQEQLPDLHS 178 (310)
T ss_dssp HHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHHHHHHHHTSCGGGGTH--HHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHHHHHHHhccccccccc--ccHHHHHHHHHHHHHHHHHhChHHHH
Confidence 9999999999999999999999999998 899999999999987 455553 45778999999999999999999999
Q ss_pred HHHhCCCCCchHHHHHHHHHccccCCHHhHHHHHHHHHhccCchhHHHHHHHHHHHhHHHhhccc
Q 019449 276 HLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEILADITGNLDAKKACNEALKIQKKYLSKSK 340 (341)
Q Consensus 276 hl~~~~i~~~~f~~~W~~~lF~~~l~~~~v~riWD~l~~~~g~~~l~~~~~~~l~l~~~~ll~~~ 340 (341)
||.+.|+++.+|+++||+|+|++++|++.++||||.++.. |...++++++|+++.+++.|+++.
T Consensus 179 hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~-g~~~l~~v~lail~~~~~~Ll~~d 242 (310)
T 3hzj_A 179 HFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCE-GLNIIFHVALALLKTSKEDLLQAD 242 (310)
T ss_dssp HHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHH-CTTHHHHHHHHHHHHTHHHHHTCC
T ss_pred HHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-CcHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999976 888899999999999999999864
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=2.1e-43 Score=325.64 Aligned_cols=229 Identities=21% Similarity=0.246 Sum_probs=189.0
Q ss_pred HHHHHhhccCCCcCHHHHHHHHHhC-C-CCCChhHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 019449 44 RRWHAAFSEDGHLDIAKVLRRIQRG-G-IHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIG 121 (341)
Q Consensus 44 ~~W~~~~~~~~~i~~~~l~~~~~~~-G-Ip~~~R~~vW~~llg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~ 121 (341)
+.+++++.. +.+|.+++.+.++.+ | +|+++|+.||+.|+|+.+...+.. |.....
T Consensus 21 ~~i~~~l~~-~~~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~~------------~~~~~~---------- 77 (292)
T 4hl4_A 21 AEIHQALNS-DPTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPPI------------SGKNLR---------- 77 (292)
T ss_dssp HHHHHHHTS-SSCCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCSC------------CCTTHH----------
T ss_pred HHHHHHHcC-CcccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCCc------------hhhhhc----------
Confidence 467777754 568999955555543 3 789999999999999977643211 110000
Q ss_pred CCccccccccccCCCccCCCCCcCcCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCccCCCh----hhHHHHHHH
Q 019449 122 SGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESE----TNQAKLWDV 197 (341)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~----~~~~~L~~I 197 (341)
...+..+||++||.||+|.++.|..+ ..++.|.||
T Consensus 78 -----------------------------------------~~~~~~~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~i 116 (292)
T 4hl4_A 78 -----------------------------------------QMSKDYQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDI 116 (292)
T ss_dssp -----------------------------------------HHCTTHHHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHH
T ss_pred -----------------------------------------ccchhHHHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHH
Confidence 00145789999999999999988653 567889999
Q ss_pred HHHHhHhcCCCCcCCChHHHHHHHHhhhhchhHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhhCHHHHHHH
Q 019449 198 LAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHL 277 (341)
Q Consensus 198 L~~y~~~~p~igY~QGm~~i~a~ll~~~~~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl 277 (341)
|.+|+.+||++|||||||+|||+|++++ +|++|||||+++|....+.|+ .++++++...+..++.+|+..+|+||+||
T Consensus 117 L~ay~~~~p~vgY~QGm~~iaa~lLl~~-~e~~aF~~l~~l~~~~l~~~~-~~~~~~~~~~~~~l~~ll~~~~P~L~~hL 194 (292)
T 4hl4_A 117 ILLILERNPQLHYYQGYHDIVVTFLLVV-GERLATSLVEKLSTHHLRDFM-DPTMDNTKHILNYLMPIIDQVNPELHDFM 194 (292)
T ss_dssp HHHHHHHCTTCCCCTTHHHHHHHHHHHH-CHHHHHHHHHHHHHTTTTGGG-CSSSCTTTGGGGGHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHCCCCCeeccHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence 9999999999999999999999999887 899999999999998655555 34567888999999999999999999999
Q ss_pred HhCCCCCchHHHHHHHHHccccCC-HHhHHHHHHHHHhccCchhHHHHHHHHHHHhHHHhhccc
Q 019449 278 EDLDGGEYLFAFRMLMVLFRREFS-FVDALYLWEILADITGNLDAKKACNEALKIQKKYLSKSK 340 (341)
Q Consensus 278 ~~~~i~~~~f~~~W~~~lF~~~l~-~~~v~riWD~l~~~~g~~~l~~~~~~~l~l~~~~ll~~~ 340 (341)
.+.++ +.+|+++||+|+|++++| ++.++||||.++.. |...+++++++++..+++.||+++
T Consensus 195 ~~~~i-~~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~-g~~~~~~v~~ail~~~~~~Ll~~~ 256 (292)
T 4hl4_A 195 QSAEV-GTIFALSWLITWFGHVLSDFRHVVRLYDFFLAC-HPLMPIYFAAVIVLYREQEVLDCD 256 (292)
T ss_dssp C-CCC-CSGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHS-CTTHHHHHHHHHHHHTHHHHHTSC
T ss_pred HHcCC-CcchHHHHHHHHHhhhcCcHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHcCC
Confidence 99999 569999999999999996 99999999999976 778888999999999999999864
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=5.1e-38 Score=287.95 Aligned_cols=220 Identities=16% Similarity=0.167 Sum_probs=177.7
Q ss_pred HHHHHhhccCCCcCHHHHHHHHHhCCCCCChhHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 019449 44 RRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSG 123 (341)
Q Consensus 44 ~~W~~~~~~~~~i~~~~l~~~~~~~GIp~~~R~~vW~~llg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~ 123 (341)
+..+.++.+ ..+|.+++.+.+++||||+.+|+.||++|+|++|.+++. |..++++++++|.+++++.
T Consensus 27 ~~~~~ll~~-~~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~--~~~~l~~kr~eY~~l~~~~---------- 93 (294)
T 3qwl_A 27 KSLEILLKD-DRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHES--HAKVMMYRKEQYLDVLHAL---------- 93 (294)
T ss_dssp HHHHHHTTS-SBCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGG--HHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHhcC-CCCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchh--HHHHHHHHHHHHHHHHHhh----------
Confidence 346666654 678999977777676699999999999999999998754 7788999999999998873
Q ss_pred ccccccccccCCCccCCCCCcCcCCCCCCCCccchHHHHHHHHHHHHHhhccccCCCCCccCCChhhHHHHHHHHHHHhH
Q 019449 124 KFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSW 203 (341)
Q Consensus 124 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~L~~IL~~y~~ 203 (341)
++.++|+.+.++ ....+..|..
T Consensus 94 ------------------------------------------~~~r~I~~~tP~----------------~~vfl~~~~~ 115 (294)
T 3qwl_A 94 ------------------------------------------KVVRFVSDATPQ----------------AEVYLRMYQL 115 (294)
T ss_dssp ------------------------------------------HHTTSCCTTSCH----------------HHHHHHHHHH
T ss_pred ------------------------------------------hhhhhhhccCch----------------HHHHHHHHHc
Confidence 234455543221 1112222322
Q ss_pred h----------cCCCCcCCChHHHHHHHHhhhhchhHHHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHHhhCHHH
Q 019449 204 V----------DNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKL 273 (341)
Q Consensus 204 ~----------~p~igY~QGm~~i~a~ll~~~~~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L 273 (341)
. +++ .++|||..||++++.++.+|++|||||+++|++++++|.. +++|++.. ++.+++..+|+|
T Consensus 116 ~~~~l~~~~~~~~~-~~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~l~~~f~~--~~~gl~~~---l~~LL~~~dP~L 189 (294)
T 3qwl_A 116 ESGKLPRSPSFPLE-PDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTKYRD--SLPQLPKA---FEQYLNLEDGRL 189 (294)
T ss_dssp HHTCCCSSTTSCCC-HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTTTTT--TGGGHHHH---HHHHHHHHCHHH
T ss_pred ccccccccccCCcc-cchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhCC--ChhHHHHH---HHHHHHHHHHHH
Confidence 1 222 2569999999999999999999999999999998877764 46788754 489999999999
Q ss_pred HHHHHhCCCCCchHHHHHHHHHccccCCHHhHHHHHHHHHhccCchhHHHHHHHHHHHhHHHhhcccC
Q 019449 274 HQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWEILADITGNLDAKKACNEALKIQKKYLSKSKK 341 (341)
Q Consensus 274 ~~hl~~~~i~~~~f~~~W~~~lF~~~l~~~~v~riWD~l~~~~g~~~l~~~~~~~l~l~~~~ll~~~~ 341 (341)
++||++.|+.+.+++.+||+|+|++++|+++++||||.++. +|...++++|+|+|+.+++.||++++
T Consensus 190 ~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~~-~~~~~l~~valAiL~~~r~~Ll~~~~ 256 (294)
T 3qwl_A 190 LTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVS-GSCKILVFVAVEILLTFKIKVMALNS 256 (294)
T ss_dssp HHHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHHT-TCSTHHHHHHHHHHHHTHHHHHHCCS
T ss_pred HHHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999987777779999999999999999999999997 47888889999999999999998753
No 8
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=25.51 E-value=72 Score=24.82 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=10.0
Q ss_pred CCCcCHHHHHHHHHhCCCC
Q 019449 53 DGHLDIAKVLRRIQRGGIH 71 (341)
Q Consensus 53 ~~~i~~~~l~~~~~~~GIp 71 (341)
+|.|+..++.+.+..-|.+
T Consensus 99 ~G~I~~~el~~~l~~~g~~ 117 (159)
T 3i5g_C 99 QGLISSAEIRNVLKMLGER 117 (159)
T ss_dssp SSEECHHHHHHHHHHSSSC
T ss_pred CCcCcHHHHHHHHHHhCCC
Confidence 4556666654445444543
No 9
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=19.93 E-value=86 Score=21.90 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=19.7
Q ss_pred HHHHHhCCCCCChhHHHHHHhhCC
Q 019449 62 LRRIQRGGIHPSIKGLVWEFLLGC 85 (341)
Q Consensus 62 ~~~~~~~GIp~~~R~~vW~~llg~ 85 (341)
+..+..-.||...|..+|+-+...
T Consensus 41 ledL~~mkIpe~~R~kIWk~l~e~ 64 (80)
T 1dxs_A 41 IEDLGALKIPEQYRMTIWRGLQDL 64 (80)
T ss_dssp HHHHHHTTCCTTTHHHHHHHHHHC
T ss_pred HHHHHhCCCCHHHHHHHHhhHHHh
Confidence 445666689999999999999864
No 10
>2js3_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural G PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris}
Probab=19.36 E-value=32 Score=23.95 Aligned_cols=11 Identities=45% Similarity=0.706 Sum_probs=9.2
Q ss_pred CcCCChHHHHH
Q 019449 209 GYVQGMNDICS 219 (341)
Q Consensus 209 gY~QGm~~i~a 219 (341)
-|+|||.++++
T Consensus 17 lyfqgM~~~a~ 27 (96)
T 2js3_A 17 LYFQGMTDTAA 27 (96)
T ss_dssp BTTBSTTTHHH
T ss_pred eeeccccccCH
Confidence 49999998875
Done!