Query 019457
Match_columns 340
No_of_seqs 186 out of 1128
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 09:37:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019457.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019457hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02449 ferrochelatase 100.0 1.8E-73 3.8E-78 575.9 30.6 253 88-340 78-330 (485)
2 COG0276 HemH Protoheme ferro-l 100.0 2.2E-69 4.9E-74 521.8 26.2 233 96-340 2-235 (320)
3 PF00762 Ferrochelatase: Ferro 100.0 4.8E-68 1E-72 514.8 25.2 233 99-340 1-233 (316)
4 KOG1321 Protoheme ferro-lyase 100.0 6.2E-68 1.3E-72 503.9 23.6 238 96-340 35-277 (395)
5 TIGR00109 hemH ferrochelatase. 100.0 3.5E-66 7.6E-71 502.7 26.3 237 96-340 2-238 (322)
6 PRK12435 ferrochelatase; Provi 100.0 2.5E-61 5.4E-66 467.0 26.6 219 96-340 1-223 (311)
7 PRK00035 hemH ferrochelatase; 100.0 4.2E-60 9.1E-65 460.2 28.2 236 97-340 3-240 (333)
8 cd03411 Ferrochelatase_N Ferro 100.0 7.6E-47 1.6E-51 333.1 17.0 159 100-263 1-159 (159)
9 cd00419 Ferrochelatase_C Ferro 99.6 5.2E-15 1.1E-19 127.8 8.2 68 268-340 1-69 (135)
10 cd03409 Chelatase_Class_II Cla 99.3 6.5E-11 1.4E-15 95.3 11.3 74 166-244 13-88 (101)
11 cd03414 CbiX_SirB_C Sirohydroc 98.5 2E-06 4.4E-11 71.4 12.9 111 162-278 6-117 (117)
12 PRK00923 sirohydrochlorin coba 98.5 1E-06 2.2E-11 74.5 10.5 111 162-277 7-126 (126)
13 PLN02757 sirohydrochlorine fer 98.4 8.4E-06 1.8E-10 72.2 14.2 115 162-281 19-135 (154)
14 cd03415 CbiX_CbiC Archaeal sir 98.3 1.2E-05 2.7E-10 68.8 12.8 109 162-276 6-124 (125)
15 PRK02395 hypothetical protein; 98.2 3.8E-05 8.2E-10 73.8 15.4 129 162-297 7-146 (279)
16 cd03412 CbiK_N Anaerobic cobal 97.9 0.0002 4.4E-09 61.2 12.7 107 163-276 7-125 (127)
17 PF01903 CbiX: CbiX; InterPro 97.8 4.7E-05 1E-09 61.9 5.9 90 177-272 13-105 (105)
18 PRK05782 bifunctional sirohydr 97.7 0.0005 1.1E-08 68.1 13.3 115 161-281 11-135 (335)
19 TIGR00109 hemH ferrochelatase. 97.7 0.00065 1.4E-08 66.7 12.8 107 164-278 205-321 (322)
20 PLN02449 ferrochelatase 97.5 0.0012 2.7E-08 68.2 13.0 113 165-280 295-415 (485)
21 PRK00035 hemH ferrochelatase; 97.5 0.0015 3.3E-08 64.0 13.1 108 166-280 208-325 (333)
22 cd03413 CbiK_C Anaerobic cobal 97.5 0.00042 9.1E-09 57.4 7.5 61 162-225 6-66 (103)
23 cd03416 CbiX_SirB_N Sirohydroc 97.3 0.0044 9.6E-08 50.0 10.7 66 163-229 6-72 (101)
24 PF00762 Ferrochelatase: Ferro 97.1 0.0049 1.1E-07 60.5 11.4 106 164-278 201-316 (316)
25 COG2138 Sirohydrochlorin ferro 97.1 0.005 1.1E-07 58.6 10.6 125 162-295 8-134 (245)
26 PRK12435 ferrochelatase; Provi 97.0 0.01 2.3E-07 58.2 12.5 111 164-279 191-308 (311)
27 PRK02395 hypothetical protein; 96.4 0.05 1.1E-06 52.3 12.5 111 163-281 142-263 (279)
28 PF06180 CbiK: Cobalt chelatas 96.3 0.055 1.2E-06 52.1 11.9 92 200-299 57-154 (262)
29 COG0276 HemH Protoheme ferro-l 96.0 0.1 2.3E-06 51.6 12.4 113 164-279 201-319 (320)
30 cd00419 Ferrochelatase_C Ferro 96.0 0.062 1.4E-06 46.5 9.6 62 165-228 36-105 (135)
31 PF06180 CbiK: Cobalt chelatas 95.2 0.1 2.2E-06 50.3 8.7 105 163-279 148-262 (262)
32 cd03409 Chelatase_Class_II Cla 93.4 0.18 4E-06 40.1 5.3 41 289-339 2-42 (101)
33 COG4822 CbiK Cobalamin biosynt 91.4 2.7 5.8E-05 39.9 10.9 81 191-280 169-259 (265)
34 KOG1321 Protoheme ferro-lyase 91.3 1.1 2.4E-05 44.5 8.7 115 164-281 244-363 (395)
35 TIGR00640 acid_CoA_mut_C methy 85.3 4.9 0.00011 34.6 7.9 105 100-219 3-110 (132)
36 PF06309 Torsin: Torsin; Inte 75.7 12 0.00026 32.5 6.9 60 260-332 27-86 (127)
37 COG0761 lytB 4-Hydroxy-3-methy 60.9 15 0.00032 36.1 5.0 39 284-322 65-113 (294)
38 PRK09426 methylmalonyl-CoA mut 60.6 27 0.00058 38.4 7.4 127 96-243 579-707 (714)
39 COG4822 CbiK Cobalamin biosynt 60.4 1.4E+02 0.003 28.6 11.0 21 204-224 63-83 (265)
40 PRK04147 N-acetylneuraminate l 54.0 85 0.0018 30.1 9.0 63 179-245 63-128 (293)
41 PF00701 DHDPS: Dihydrodipicol 53.3 1.5E+02 0.0033 28.1 10.6 54 187-244 68-124 (289)
42 PRK03620 5-dehydro-4-deoxygluc 52.3 1.2E+02 0.0026 29.4 9.8 57 183-244 70-129 (303)
43 cd00408 DHDPS-like Dihydrodipi 50.6 1.4E+02 0.0031 28.1 9.8 53 188-244 65-120 (281)
44 PF00532 Peripla_BP_1: Peripla 49.6 1.4E+02 0.0031 28.1 9.7 77 172-264 16-92 (279)
45 cd03174 DRE_TIM_metallolyase D 47.8 1.1E+02 0.0023 28.3 8.4 43 182-224 123-169 (265)
46 COG4750 LicC CTP:phosphocholin 47.7 22 0.00047 33.5 3.5 48 163-225 9-56 (231)
47 PLN02757 sirohydrochlorine fer 47.3 39 0.00085 29.9 5.1 27 97-123 11-39 (154)
48 PF13684 Dak1_2: Dihydroxyacet 46.4 34 0.00073 33.7 4.9 46 178-224 107-152 (313)
49 PLN02417 dihydrodipicolinate s 45.8 1.3E+02 0.0029 28.7 8.9 66 175-244 56-124 (280)
50 KOG1322 GDP-mannose pyrophosph 44.7 47 0.001 33.5 5.6 77 192-282 35-111 (371)
51 COG2108 Uncharacterized conser 44.6 1.5E+02 0.0032 30.0 8.9 79 156-242 74-160 (353)
52 TIGR02313 HpaI-NOT-DapA 2,4-di 43.4 1.5E+02 0.0032 28.6 8.8 63 179-245 59-124 (294)
53 COG0406 phoE Broad specificity 42.6 2.4E+02 0.0053 25.0 11.7 48 165-216 26-76 (208)
54 TIGR00674 dapA dihydrodipicoli 42.0 1.5E+02 0.0032 28.3 8.6 52 189-244 67-121 (285)
55 cd02167 NMNAT_NadR Nicotinamid 41.8 1.7E+02 0.0037 25.7 8.3 97 197-298 7-112 (158)
56 TIGR03249 KdgD 5-dehydro-4-deo 41.8 1.5E+02 0.0032 28.5 8.6 52 188-244 73-127 (296)
57 TIGR00683 nanA N-acetylneurami 41.7 1.7E+02 0.0038 28.1 9.0 58 183-244 64-124 (290)
58 cd02072 Glm_B12_BD B12 binding 41.2 52 0.0011 28.4 4.7 80 127-219 28-113 (128)
59 cd00954 NAL N-Acetylneuraminic 41.0 2.1E+02 0.0046 27.3 9.5 65 177-245 58-125 (288)
60 TIGR00539 hemN_rel putative ox 40.5 61 0.0013 32.1 5.8 54 161-219 56-115 (360)
61 COG1453 Predicted oxidoreducta 38.9 1.5E+02 0.0032 30.5 8.1 120 171-300 31-159 (391)
62 cd00951 KDGDH 5-dehydro-4-deox 38.3 1.8E+02 0.0038 28.0 8.5 52 188-244 68-122 (289)
63 cd03174 DRE_TIM_metallolyase D 37.9 3.2E+02 0.007 25.0 10.9 103 204-323 77-188 (265)
64 PF15643 Tox-PL-2: Papain fold 36.3 34 0.00074 28.5 2.7 25 310-334 19-44 (100)
65 PF03652 UPF0081: Uncharacteri 35.5 2.4E+02 0.0052 24.2 8.0 65 196-262 33-98 (135)
66 PRK05799 coproporphyrinogen II 34.7 4.6E+02 0.01 25.9 12.9 55 162-218 57-113 (374)
67 cd00952 CHBPH_aldolase Trans-o 34.2 1.7E+02 0.0037 28.5 7.7 59 182-244 70-131 (309)
68 PF01297 TroA: Periplasmic sol 33.9 1.3E+02 0.0028 27.9 6.6 118 163-324 28-146 (256)
69 cd07948 DRE_TIM_HCS Saccharomy 33.6 4.3E+02 0.0093 25.2 11.7 107 200-323 71-183 (262)
70 cd07938 DRE_TIM_HMGL 3-hydroxy 33.3 4.4E+02 0.0095 25.2 10.5 47 175-221 115-169 (274)
71 PLN03194 putative disease resi 33.1 1.9E+02 0.0042 26.7 7.3 64 174-244 41-107 (187)
72 PTZ00322 6-phosphofructo-2-kin 32.8 3.8E+02 0.0082 29.1 10.7 49 161-212 437-487 (664)
73 PRK03170 dihydrodipicolinate s 32.6 2.5E+02 0.0054 26.8 8.4 50 189-242 70-122 (292)
74 cd00950 DHDPS Dihydrodipicolin 31.2 4.1E+02 0.0088 25.1 9.6 50 189-242 69-121 (284)
75 PRK11706 TDP-4-oxo-6-deoxy-D-g 30.7 85 0.0018 30.9 5.0 13 216-228 347-359 (375)
76 PRK11658 UDP-4-amino-4-deoxy-L 30.6 81 0.0018 31.2 4.9 16 263-278 362-377 (379)
77 PF13204 DUF4038: Protein of u 30.5 2.9E+02 0.0063 26.7 8.6 87 203-298 90-189 (289)
78 PTZ00397 macrophage migration 30.3 3.1E+02 0.0066 22.5 8.4 28 310-337 72-101 (116)
79 PLN00061 photosystem II protei 30.1 1.4E+02 0.003 26.7 5.6 58 114-184 90-147 (150)
80 cd01545 PBP1_SalR Ligand-bindi 30.0 1.2E+02 0.0026 27.2 5.5 13 204-216 70-82 (270)
81 cd06335 PBP1_ABC_ligand_bindin 29.6 1.8E+02 0.004 27.8 7.1 52 171-222 150-201 (347)
82 PF14606 Lipase_GDSL_3: GDSL-l 29.4 46 0.001 30.4 2.6 87 165-262 18-104 (178)
83 PF08029 HisG_C: HisG, C-termi 29.2 53 0.0011 25.8 2.6 24 200-223 49-72 (75)
84 PF02645 DegV: Uncharacterised 29.1 1.9E+02 0.0042 27.5 7.0 59 199-265 61-122 (280)
85 TIGR03599 YloV DAK2 domain fus 28.8 99 0.0021 32.9 5.3 47 177-224 324-370 (530)
86 cd06267 PBP1_LacI_sugar_bindin 27.8 1.3E+02 0.0029 26.4 5.3 16 207-222 71-86 (264)
87 TIGR01754 flav_RNR ribonucleot 27.7 3.7E+02 0.008 22.5 10.3 21 171-191 13-33 (140)
88 PF03358 FMN_red: NADPH-depend 27.5 1.1E+02 0.0024 25.7 4.6 30 165-194 8-38 (152)
89 PRK13111 trpA tryptophan synth 27.4 1.5E+02 0.0033 28.3 6.0 107 100-223 13-126 (258)
90 PRK12360 4-hydroxy-3-methylbut 27.4 1.5E+02 0.0033 28.9 6.0 37 286-322 69-115 (281)
91 TIGR00262 trpA tryptophan synt 26.7 1.5E+02 0.0033 28.2 5.8 34 189-223 87-124 (256)
92 PF11965 DUF3479: Domain of un 26.6 1.6E+02 0.0035 26.6 5.6 48 217-270 2-51 (164)
93 PF13653 GDPD_2: Glycerophosph 26.5 60 0.0013 21.2 2.1 23 197-219 3-25 (30)
94 COG1609 PurR Transcriptional r 26.5 3.8E+02 0.0082 26.1 8.7 52 170-223 71-123 (333)
95 cd07941 DRE_TIM_LeuA3 Desulfob 26.4 4.1E+02 0.0089 25.3 8.8 38 183-222 128-171 (273)
96 TIGR02017 hutG_amidohyd N-form 26.2 91 0.002 29.9 4.2 30 265-298 122-151 (263)
97 COG3636 Predicted transcriptio 26.1 1.6E+02 0.0036 24.5 5.0 73 112-216 19-91 (100)
98 cd06360 PBP1_alkylbenzenes_lik 26.1 5.4E+02 0.012 24.0 10.0 50 171-220 146-195 (336)
99 PF07799 DUF1643: Protein of u 25.9 4E+02 0.0087 22.4 8.1 59 200-265 31-99 (136)
100 TIGR03588 PseC UDP-4-keto-6-de 25.8 61 0.0013 31.8 3.0 14 203-216 309-322 (380)
101 COG0528 PyrH Uridylate kinase 25.7 2.5E+02 0.0053 27.0 6.9 61 171-234 79-146 (238)
102 smart00729 Elp3 Elongator prot 25.3 2.8E+02 0.0061 23.5 6.8 53 173-227 136-193 (216)
103 PRK01045 ispH 4-hydroxy-3-meth 25.2 2.1E+02 0.0045 28.2 6.5 37 286-322 66-112 (298)
104 cd06346 PBP1_ABC_ligand_bindin 25.0 2.4E+02 0.0052 26.5 6.9 55 171-226 149-203 (312)
105 PRK05692 hydroxymethylglutaryl 24.9 5.9E+02 0.013 24.6 9.6 38 184-221 130-175 (287)
106 cd06343 PBP1_ABC_ligand_bindin 24.8 2.6E+02 0.0057 26.7 7.2 57 168-225 153-209 (362)
107 cd06329 PBP1_SBP_like_3 Peripl 24.8 5.7E+02 0.012 24.3 9.5 54 169-222 153-209 (342)
108 cd01542 PBP1_TreR_like Ligand- 24.7 1.7E+02 0.0037 26.0 5.6 11 205-215 69-79 (259)
109 cd06286 PBP1_CcpB_like Ligand- 24.6 1.7E+02 0.0037 26.2 5.5 19 205-223 46-64 (260)
110 PF05036 SPOR: Sporulation rel 24.5 2E+02 0.0044 20.7 5.0 47 173-219 15-74 (76)
111 PF01261 AP_endonuc_2: Xylose 24.5 4.5E+02 0.0097 22.5 9.0 71 173-243 26-114 (213)
112 PF02633 Creatininase: Creatin 24.3 1.3E+02 0.0029 27.9 4.8 49 171-223 41-108 (237)
113 PRK14460 ribosomal RNA large s 24.0 7.4E+02 0.016 24.8 12.6 147 162-328 162-322 (354)
114 cd06348 PBP1_ABC_ligand_bindin 23.8 2.4E+02 0.0053 26.7 6.7 55 171-226 149-203 (344)
115 cd07910 MiaE MiaE tRNA-modifyi 23.6 19 0.00042 33.0 -0.9 58 254-316 38-95 (180)
116 KOG2263 Methionine synthase II 23.6 85 0.0018 33.4 3.6 61 262-340 460-523 (765)
117 cd06349 PBP1_ABC_ligand_bindin 23.2 2.5E+02 0.0055 26.5 6.7 52 170-221 146-197 (340)
118 cd06320 PBP1_allose_binding Pe 22.8 5.6E+02 0.012 23.0 11.6 13 203-215 71-83 (275)
119 cd06312 PBP1_ABC_sugar_binding 22.8 1.5E+02 0.0033 26.8 4.9 14 203-216 71-84 (271)
120 PF15186 TEX13: Testis-express 22.7 33 0.00071 30.6 0.4 27 103-129 22-56 (152)
121 TIGR00216 ispH_lytB (E)-4-hydr 22.5 2.8E+02 0.0061 27.1 6.8 37 286-322 66-112 (280)
122 PF08210 APOBEC_N: APOBEC-like 22.4 88 0.0019 28.6 3.1 103 157-277 72-186 (188)
123 KOG3871 Cell adhesion complex 22.0 1.7E+02 0.0038 29.9 5.3 77 113-223 359-436 (449)
124 PRK05660 HemN family oxidoredu 21.9 2E+02 0.0043 28.8 5.8 57 162-220 64-123 (378)
125 cd06595 GH31_xylosidase_XylS-l 21.8 7.1E+02 0.015 23.8 11.3 74 201-281 74-148 (292)
126 PRK08898 coproporphyrinogen II 21.4 2.1E+02 0.0045 28.8 5.9 53 163-220 80-138 (394)
127 cd06345 PBP1_ABC_ligand_bindin 21.3 2.9E+02 0.0062 26.3 6.6 53 170-222 155-207 (344)
128 TIGR02650 RNase_Z_T_toga ribon 21.2 2.2E+02 0.0049 27.8 5.8 32 198-229 219-250 (277)
129 PRK06582 coproporphyrinogen II 21.0 2.2E+02 0.0048 28.7 6.0 152 162-328 68-240 (390)
130 cd06322 PBP1_ABC_sugar_binding 20.3 2E+02 0.0044 25.8 5.1 44 173-219 42-85 (267)
No 1
>PLN02449 ferrochelatase
Probab=100.00 E-value=1.8e-73 Score=575.93 Aligned_cols=253 Identities=75% Similarity=1.205 Sum_probs=235.2
Q ss_pred ccccccccCCCceEEEEEccCCCCCcCcHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhccchhhHHhhcccCCCCc
Q 019457 88 EYESHAQAAEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSP 167 (340)
Q Consensus 88 ~~~~~~~~~~~k~aVLLlNlG~P~s~~dV~~FL~~~l~D~~VI~lP~~~~~~~~~L~~lI~~~R~~ksa~~Y~~IGggSP 167 (340)
...++.+.+++|+||||+|||||++++||++||+|||+||+||++|+++|++|++|+++|+++|++|++++|++||||||
T Consensus 78 ~~~~~~~~~~~k~gVLLlNlGgPes~~dV~pFL~nlfsD~~II~lP~~~~~~~~~La~~Ia~~R~~ks~~~Y~~IGGgSP 157 (485)
T PLN02449 78 AVADHPKVSEEKVGVLLLNLGGPETLDDVQPFLYNLFADPDIIRLPRLFRFLQKPLAQFISNLRAPKSKEGYASIGGGSP 157 (485)
T ss_pred cccccccccCCceEEEEEeCCCCCChhHHHHHHHHhcCCCCeeeCchhhhHHHHHHHHHHhccCcHHHHHHHHHCCCCCc
Confidence 56677777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCceeEeeeeccCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhhc
Q 019457 168 LRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDA 247 (340)
Q Consensus 168 L~~~T~~Qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~~~~~~ 247 (340)
|+.+|++|+++|++.|++.+.+++|++|||||+||++|+|++|+++|+++||+||||||||.+||||+++.+++++++..
T Consensus 158 L~~iT~~Qa~~Lq~~L~~~~~~~~V~~aMRY~~P~iedal~~l~~~G~~~iVvLPLYPQyS~sTtgSs~~~l~~~~~~~~ 237 (485)
T PLN02449 158 LRKITDEQAEALAKALEAKNLPAKVYVGMRYWHPFTEEAIDQIKADGITKLVVLPLYPQFSISTSGSSLRLLESIFREDE 237 (485)
T ss_pred hHHHHHHHHHHHHHHHhccCCCeEEEEhhhcCCCCHHHHHHHHHhcCCCeEEEEECCcccccccHHHHHHHHHHHHhhcc
Confidence 99999999999999998878889999999999999999999999999999999999999999999999999999887765
Q ss_pred cCCCCCEEEecCCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEEecCCchhhhccCCCchHHHHHHHHHHHHHHhhccC
Q 019457 248 YLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRG 327 (340)
Q Consensus 248 ~~~~~~v~~I~~~~~~p~yI~a~a~~I~~~L~~~~~~~~~~LlFSaHglP~~~ie~~GDpY~~q~~~T~~~Iae~L~~~g 327 (340)
....+++++|++||+||+||+|++++|+++|++++.+++++|||||||||+++++++||||++||++|+++|+++|+..+
T Consensus 238 ~~~~~~~~~I~~~~~~p~yI~A~a~~I~~~l~~~~~~~~~~LlFSAHGlP~~~v~~~GDpY~~q~~~ta~lI~~~L~~~~ 317 (485)
T PLN02449 238 YLVNMQHTVIPSWYQREGYVKAMADLIKKELAKFSDPEEVHIFFSAHGVPVSYVEEAGDPYKAQMEECVDLIMEELKARG 317 (485)
T ss_pred cccCCeeEEeccccCChHHHHHHHHHHHHHHHhccCcCCcEEEEecCCChhhhhhhcCCChHHHHHHHHHHHHHHhCCCC
Confidence 43356899999999999999999999999998876667789999999999999955799999999999999999995433
Q ss_pred CCCCeEEEEecCC
Q 019457 328 INNDHTLAYQVWF 340 (340)
Q Consensus 328 l~~~~~layQSrf 340 (340)
+.++|+++|||||
T Consensus 318 ~~~~~~layQSR~ 330 (485)
T PLN02449 318 ILNRHTLAYQSRV 330 (485)
T ss_pred CCCCeEEEEeCCC
Confidence 3368999999997
No 2
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=100.00 E-value=2.2e-69 Score=521.78 Aligned_cols=233 Identities=43% Similarity=0.744 Sum_probs=219.0
Q ss_pred CCCceEEEEEccCCCCCcCcHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhccchhhHHhhcccCCCCchhHHHHHH
Q 019457 96 AEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQ 175 (340)
Q Consensus 96 ~~~k~aVLLlNlG~P~s~~dV~~FL~~~l~D~~VI~lP~~~~~~~~~L~~lI~~~R~~ksa~~Y~~IGggSPL~~~T~~Q 175 (340)
+.+|+||||||||||++++||++||+|||+||+|+++|+++|+ ||+++|++.|+++++++|+.|||+|||+.+|++|
T Consensus 2 ~~~k~avLL~nlG~P~~~e~v~~yL~~~~~d~~v~~~~~~~~~---~l~~~I~~~R~~~~~~~Y~~igg~sPL~~~T~~q 78 (320)
T COG0276 2 KMKKTAVLLLNLGGPETLEDVRPYLKNFLSDRRVIELPRPLWY---PLAGIILPLRLKKVAKNYESIGGKSPLNVITRAQ 78 (320)
T ss_pred CCCceEEEEEecCCCCChHHHHHHHHHHhcCCCCCCCchhhhh---hhhhhhhhhccHHHHHHHHHhcCCCccHHHHHHH
Confidence 4578999999999999999999999999999999999987654 4999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeEeeeeccCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhhccCCCCCEE
Q 019457 176 AQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVS 255 (340)
Q Consensus 176 a~~L~~~L~~~g~~~~V~~aMrY~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~~~~~~~~~~~~v~ 255 (340)
+++|++.|+ ..+++|++|||||+||++|++++|+++|+++||++|||||||++|||++++.+.+++++.+ ..++++
T Consensus 79 ~~~L~~~L~--~~~~~V~~amry~~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~sTt~s~~~~~~~al~~~~--~~~~i~ 154 (320)
T COG0276 79 AAALEERLD--LPDFKVYLAMRYGPPFIEEAVEELKKDGVERIVVLPLYPQYSSSTTGSYVDELARALKELR--GQPKIS 154 (320)
T ss_pred HHHHHHHhC--CCCccEEEeecCCCCcHHHHHHHHHHcCCCeEEEEECCcccccccHHHHHHHHHHHHHhcC--CCCceE
Confidence 999999998 4489999999999999999999999999999999999999999999999999999998776 346899
Q ss_pred EecCCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEEecCCchhhhccCCCchHHHHHHHHHHHHHHhhccCC-CCCeEE
Q 019457 256 IIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGI-NNDHTL 334 (340)
Q Consensus 256 ~I~~~~~~p~yI~a~a~~I~~~L~~~~~~~~~~LlFSaHglP~~~ie~~GDpY~~q~~~T~~~Iae~L~~~gl-~~~~~l 334 (340)
+|++||+||.||+||+++|++.+++++ .++.+|||||||||+++++ .||||++||++|+++|++.| |+ ..+|.+
T Consensus 155 ~I~~~~~~p~yI~a~a~~I~~~~~~~~-~~~~~llfSaHglP~~~~~-~GDpY~~q~~~t~~li~e~l---g~~~~~~~~ 229 (320)
T COG0276 155 TIPDYYDEPLYIEALADSIREKLAKHP-RDDDVLLFSAHGLPKRYID-EGDPYPQQCQETTRLIAEAL---GLPEEEYDL 229 (320)
T ss_pred EecCccCChHHHHHHHHHHHHHHHhcC-CCCeEEEEecCCCchhhhh-cCCchHHHHHHHHHHHHHHc---CCCchheeE
Confidence 999999999999999999999999987 4667999999999999997 59999999999999999999 76 368999
Q ss_pred EEecCC
Q 019457 335 AYQVWF 340 (340)
Q Consensus 335 ayQSrf 340 (340)
+|||||
T Consensus 230 ~~QS~~ 235 (320)
T COG0276 230 TFQSRF 235 (320)
T ss_pred EeecCC
Confidence 999997
No 3
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=100.00 E-value=4.8e-68 Score=514.76 Aligned_cols=233 Identities=43% Similarity=0.716 Sum_probs=201.6
Q ss_pred ceEEEEEccCCCCCcCcHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhccchhhHHhhcccCCCCchhHHHHHHHHH
Q 019457 99 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQA 178 (340)
Q Consensus 99 k~aVLLlNlG~P~s~~dV~~FL~~~l~D~~VI~lP~~~~~~~~~L~~lI~~~R~~ksa~~Y~~IGggSPL~~~T~~Qa~~ 178 (340)
|+||||+|||||++++||++||++||+|++||++| ++| +++|+++|+++|++|++++|+.|||+|||+.+|++|+++
T Consensus 1 K~aVLL~n~G~P~s~~~v~~yL~~~l~d~~vi~lp-~~~--~~~L~~~I~~~R~~~~~~~Y~~ig~~SPL~~~t~~qa~~ 77 (316)
T PF00762_consen 1 KTAVLLVNLGTPESPEDVRPYLREFLSDRRVIDLP-WLW--QPILAGIILPFRPKKSAERYQKIGGGSPLNEITRRQAEA 77 (316)
T ss_dssp EEEEEEEE----SSGGGHHHHHHHHTTTTTTSHST-TTT--HHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCCHHHHHHHHHHHhCCCCCCCCC-chh--HHHHHHHhhhhhHHHHHHHHHHcCCCCchHHHHHHHHHH
Confidence 78999999999999999999999999999999999 654 568999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCceeEeeeeccCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhhccCCCCCEEEec
Q 019457 179 LKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIR 258 (340)
Q Consensus 179 L~~~L~~~g~~~~V~~aMrY~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~~~~~~~~~~~~v~~I~ 258 (340)
|++.|++.+.+++|++|||||+|+|+++|++|+++|+++||+||||||||.+||||+++.+++++.+... .+++++|+
T Consensus 78 l~~~L~~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~ivvlPLyPqyS~~ttgs~~~~~~~~~~~~~~--~~~~~~i~ 155 (316)
T PF00762_consen 78 LQQRLDERGVDVEVYYAMRYGPPSIEDALEELKADGVDRIVVLPLYPQYSSSTTGSYLDEVERALKKSRP--NPKVRFIP 155 (316)
T ss_dssp HHHHHHHH-EEEEEEEEESSSSSBHHHHHHHHHHTT-SEEEEEESSSS--TTTHHHHHHHHHHHHHHTHS--SSEEEEE-
T ss_pred HHHHHHhcCCCeeEEEEeccCCCCHHHHHHHHHHcCCCeEEEEeCCCchhHhhHHHHHHHHHHHHHhcCC--CCeEEEeC
Confidence 9999998777899999999999999999999999999999999999999999999999999999987443 35799999
Q ss_pred CCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEEecCCchhhhccCCCchHHHHHHHHHHHHHHhhccCCCCCeEEEEec
Q 019457 259 SWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQV 338 (340)
Q Consensus 259 ~~~~~p~yI~a~a~~I~~~L~~~~~~~~~~LlFSaHglP~~~ie~~GDpY~~q~~~T~~~Iae~L~~~gl~~~~~layQS 338 (340)
+||+||.||+||+++|++++++++.++..+|||||||||+++++++||||++||++|+++|+++| |+. +|.++|||
T Consensus 156 ~~~~~p~yi~a~~~~i~~~l~~~~~~~~~~llfSaHglP~~~~~~~GdpY~~~~~~t~~~i~~~l---~~~-~~~~~fQS 231 (316)
T PF00762_consen 156 SFYDHPAYIEALAERIREALERFPRGEPDHLLFSAHGLPQRYVEDKGDPYPAQCEETARLIAERL---GLP-EWRLAFQS 231 (316)
T ss_dssp --TT-HHHHHHHHHHHHHHHTTS-HCCCEEEEEEEE--BHHHHTCCT-SHHHHHHHHHHHHHHHT---TTS-SEEEEEES
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEccCCCCccccccCCCChHHHHHHHHHHHHHHc---CCC-ceEEEEEC
Confidence 99999999999999999999987533357999999999999995469999999999999999999 664 49999999
Q ss_pred CC
Q 019457 339 WF 340 (340)
Q Consensus 339 rf 340 (340)
||
T Consensus 232 ~~ 233 (316)
T PF00762_consen 232 RF 233 (316)
T ss_dssp -S
T ss_pred CC
Confidence 97
No 4
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=100.00 E-value=6.2e-68 Score=503.86 Aligned_cols=238 Identities=51% Similarity=0.821 Sum_probs=227.5
Q ss_pred CCCceEEEEEccCCCCCcCcHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhccchhhHHhhcccCCCCchhHHHHHH
Q 019457 96 AEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQ 175 (340)
Q Consensus 96 ~~~k~aVLLlNlG~P~s~~dV~~FL~~~l~D~~VI~lP~~~~~~~~~L~~lI~~~R~~ksa~~Y~~IGggSPL~~~T~~Q 175 (340)
.+.|+||||||||||++++||.+||.++|.|++||++|+ |+|..|+.+|+++|+||+.++|+.|||||||+.||+.|
T Consensus 35 ~k~ktgilllNmGGP~~lddV~~FL~rLfaD~DiI~Lp~---~~Q~~lakfIak~RtPKvqe~Y~~IGGGSPir~wT~~Q 111 (395)
T KOG1321|consen 35 KKPKTGILLLNMGGPETLDDVQDFLYRLFADPDIIPLPA---FLQKTLAKFIAKRRTPKVQEQYREIGGGSPIRKWTEYQ 111 (395)
T ss_pred cCCCceEEEEcCCCCcchhhHHHHHHHHhcCCCeeeCCH---HHHhhHHHHHHHhcCchHHHHHHhccCCCchhHHHHHH
Confidence 456899999999999999999999999999999999997 47889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC---CCceeEeeeeccCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhhccCCCC
Q 019457 176 AQALKTALEAKN---LPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRL 252 (340)
Q Consensus 176 a~~L~~~L~~~g---~~~~V~~aMrY~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~~~~~~~~~~~ 252 (340)
++.+.+.|++.. .+.++|+|||||+|+.||+++||+++|++|+|++|+|||||++|+||+++.+.+.+++..+..++
T Consensus 112 ~~~m~k~Ld~~~petaphk~YVgfRY~~PlTEea~~qikkd~v~r~VafsqYPQyS~sTsGSSln~l~r~~r~~~~~~~~ 191 (395)
T KOG1321|consen 112 AEEMCKILDKKCPETAPHKPYVGFRYAHPLTEEALEQIKKDGVTRAVAFSQYPQYSCSTSGSSLNELWRQFREDGYERDI 191 (395)
T ss_pred HHHHHHHHHhcCcccCCccceeeeeecCcccHHHHHHHHhcCceeEEeeccCCceeeecCcccHHHHHHHHHhcCcccCC
Confidence 999999999876 67899999999999999999999999999999999999999999999999999999999888889
Q ss_pred CEEEecCCCCChHHHHHHHHHHHHHHhhcCCC--CceEEEEEecCCchhhhccCCCchHHHHHHHHHHHHHHhhccCCCC
Q 019457 253 PVSIIRSWYQREGYVNSMADLIQKELGKFQKP--EEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINN 330 (340)
Q Consensus 253 ~v~~I~~~~~~p~yI~a~a~~I~~~L~~~~~~--~~~~LlFSaHglP~~~ie~~GDpY~~q~~~T~~~Iae~L~~~gl~~ 330 (340)
++.+|++|+.|++||+++|++|++.|++|+++ +++.|+|||||+|+++++ +||||+.|+.+|+.+|||+|+ ..+
T Consensus 192 ~wsiIdrW~t~~glIkafA~~I~keL~~F~~~~r~~VVIlFSAHslPms~Vn-~GDpY~~Ei~atv~~iMeeL~---~~N 267 (395)
T KOG1321|consen 192 KWSIIDRWPTREGLIKAFAENIEKELQTFPEPVRDDVVILFSAHSLPMSVVN-AGDPYPAEIAATVDLIMEELK---YKN 267 (395)
T ss_pred ceEeeccccccchHHHHHHHHHHHHHHhcCCcccccEEEEEecCCCcHHHHh-cCCCcHHHHHHHHHHHHHHhc---cCC
Confidence 99999999999999999999999999999876 899999999999999997 799999999999999999994 458
Q ss_pred CeEEEEecCC
Q 019457 331 DHTLAYQVWF 340 (340)
Q Consensus 331 ~~~layQSrf 340 (340)
+++||||||.
T Consensus 268 ~y~lawQSkV 277 (395)
T KOG1321|consen 268 PYRLAWQSKV 277 (395)
T ss_pred cchhhhhccc
Confidence 9999999985
No 5
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=100.00 E-value=3.5e-66 Score=502.66 Aligned_cols=237 Identities=47% Similarity=0.813 Sum_probs=218.2
Q ss_pred CCCceEEEEEccCCCCCcCcHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhccchhhHHhhcccCCCCchhHHHHHH
Q 019457 96 AEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQ 175 (340)
Q Consensus 96 ~~~k~aVLLlNlG~P~s~~dV~~FL~~~l~D~~VI~lP~~~~~~~~~L~~lI~~~R~~ksa~~Y~~IGggSPL~~~T~~Q 175 (340)
+++|+||||+|||||++++||++||+|||+|++||++|+++ ++++++.+|+++|++|++++|++|||+|||+.+|++|
T Consensus 2 ~~~k~~VlL~n~G~P~~~~~v~~yL~~~~~D~~vi~~p~~~--~~~~l~~~I~~~R~~k~~~~Y~~igg~SPl~~~t~~q 79 (322)
T TIGR00109 2 KRKKTGVLLMNLGGPDKLEEVERFLKQLFADPRIIDISRAK--WRKPLAKMILPLRSPKIAKNYEAIGGGSPLLQITEQQ 79 (322)
T ss_pred CCCceEEEEEeCCCCCCHHHHHHHHHHHcCCcchhcCCccc--cccchHHHHHhhccHHHHHHHHHhCCCCcHHHHHHHH
Confidence 45678999999999999999999999999999999999765 4568999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeEeeeeccCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhhccCCCCCEE
Q 019457 176 AQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVS 255 (340)
Q Consensus 176 a~~L~~~L~~~g~~~~V~~aMrY~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~~~~~~~~~~~~v~ 255 (340)
+++|++.|++. .+++|++|||||+|+|+++|++|+++|+++|++||||||||.+|||++++.+.+++.+.... .++++
T Consensus 80 ~~~l~~~l~~~-~~~~V~~amry~~P~i~~~l~~l~~~G~~~iv~lPL~PqyS~~t~gs~~~~~~~~l~~~~~~-~~~~~ 157 (322)
T TIGR00109 80 AHALEKRLPNE-IDFKVYIAMRYGEPFTEEAVKELLKDGVERAVVLPLYPHFSSSTTGSSFNELAEALKKLRSL-RPTIS 157 (322)
T ss_pred HHHHHHHhccC-CCceEEEeeccCCCCHHHHHHHHHhcCCCeEEEEeCCcccccccHHHHHHHHHHHHHhcccC-CCeEE
Confidence 99999999754 57999999999999999999999999999999999999999999999999999998776432 14799
Q ss_pred EecCCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEEecCCchhhhccCCCchHHHHHHHHHHHHHHhhccCCCCCeEEE
Q 019457 256 IIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLA 335 (340)
Q Consensus 256 ~I~~~~~~p~yI~a~a~~I~~~L~~~~~~~~~~LlFSaHglP~~~ie~~GDpY~~q~~~T~~~Iae~L~~~gl~~~~~la 335 (340)
+|++||+||.||+||+++|++.|++++.+++++|||||||||+++++ +||||++||++|+++|+++| |...+|.++
T Consensus 158 ~i~~~~~~p~yi~a~~~~I~~~l~~~~~~~~~~llfSaHglP~~~~~-~Gd~Y~~~~~~ta~~l~~~l---~~~~~~~~~ 233 (322)
T TIGR00109 158 VIESWYDNPKYIKALADSIKETLASFPEPDNAVLLFSAHGLPQSYVD-EGDPYPAECEATTRLIAEKL---GFPNEYRLT 233 (322)
T ss_pred EeCccccCcHHHHHHHHHHHHHHHhcCCcCCcEEEEeCCCCchhHhh-CCCChHHHHHHHHHHHHHHc---CCCCCeEEE
Confidence 99999999999999999999999887655667899999999999996 69999999999999999999 533579999
Q ss_pred EecCC
Q 019457 336 YQVWF 340 (340)
Q Consensus 336 yQSrf 340 (340)
|||||
T Consensus 234 fQS~~ 238 (322)
T TIGR00109 234 WQSRV 238 (322)
T ss_pred EeCCC
Confidence 99997
No 6
>PRK12435 ferrochelatase; Provisional
Probab=100.00 E-value=2.5e-61 Score=466.96 Aligned_cols=219 Identities=30% Similarity=0.509 Sum_probs=193.9
Q ss_pred CCCceEEEEEccCCCCCcCcHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhccchhhHHhhcccCCCCchhHHHHHH
Q 019457 96 AEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQ 175 (340)
Q Consensus 96 ~~~k~aVLLlNlG~P~s~~dV~~FL~~~l~D~~VI~lP~~~~~~~~~L~~lI~~~R~~ksa~~Y~~IGggSPL~~~T~~Q 175 (340)
|++|+||||||||||++++||++||+|++.|+. |. +..|+. ++++|++|||+|||+.+|++|
T Consensus 1 ~~~~~avlll~~GgP~~~~~V~pfL~ni~~g~~----~~-----~~~l~~---------~~~~Y~~iGG~SPL~~~T~~q 62 (311)
T PRK12435 1 MKKKIGLLVMAYGTPYKEEDIERYYTHIRHGRK----PS-----EEMLQD---------LKDRYEAIGGISPLAKITDEQ 62 (311)
T ss_pred CCCcEEEEEEeCCCCCCHHHHHHHHHHhcCCCC----CC-----HHHHHH---------HHHHHHHhCCcChHHHHHHHH
Confidence 466799999999999999999999999999972 21 112332 369999999999999999999
Q ss_pred HHHHHHHHHhc--CCCceeEeeeeccCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhhccCCCCC
Q 019457 176 AQALKTALEAK--NLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLP 253 (340)
Q Consensus 176 a~~L~~~L~~~--g~~~~V~~aMrY~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~~~~~~~~~~~~ 253 (340)
+++|++.|++. +.+++|++|||||+|+++|+|++|+++|+++||+||||||||.+||||+.+.+.++.++. ..++
T Consensus 63 a~~L~~~L~~~~~~~~~~V~~amry~~P~i~~~l~~l~~~g~~~iv~lpLyPqyS~~Tt~s~~~~~~~~~~~~---~~~~ 139 (311)
T PRK12435 63 AKALEKALNEVQDEVEFKLYLGLKHIEPFIEDAVEQMHNDGIEEAISIVLAPHYSTFSVKSYNKRAKEEAEKL---GGPT 139 (311)
T ss_pred HHHHHHHHhhccCCCCceEEEEecCCCCCHHHHHHHHHHcCCCeEEEEECCCccccccHHHHHHHHHHHhccc---CCCe
Confidence 99999999864 457999999999999999999999999999999999999999999999988887765542 2357
Q ss_pred EEEecCCCCChHHHHHHHHHHHHHHhhcCC--CCceEEEEEecCCchhhhccCCCchHHHHHHHHHHHHHHhhccCCCCC
Q 019457 254 VSIIRSWYQREGYVNSMADLIQKELGKFQK--PEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINND 331 (340)
Q Consensus 254 v~~I~~~~~~p~yI~a~a~~I~~~L~~~~~--~~~~~LlFSaHglP~~~ie~~GDpY~~q~~~T~~~Iae~L~~~gl~~~ 331 (340)
+++|++||+||+||+|++++|+++|++++. +++++|||||||||+++++ +||||++||++|+++|+++| |+. +
T Consensus 140 ~~~i~~~~~~p~yi~a~a~~I~~~l~~~~~~~~~~~~llfSaHslP~~~i~-~GDpY~~q~~~t~~~v~~~l---~~~-~ 214 (311)
T PRK12435 140 ITSIESWYDEPKFIQYWADQIKETFAQIPEEEREKAVLIVSAHSLPEKIIA-AGDPYPDQLEETADLIAEQA---NVE-H 214 (311)
T ss_pred EEEeCCccCChHHHHHHHHHHHHHHHHcCcccccceEEEEecCCCchhHhh-CCCCHHHHHHHHHHHHHHHc---CCC-C
Confidence 999999999999999999999999988743 2567999999999999996 69999999999999999998 664 6
Q ss_pred eEEEEecCC
Q 019457 332 HTLAYQVWF 340 (340)
Q Consensus 332 ~~layQSrf 340 (340)
|.++|||||
T Consensus 215 ~~l~yQSr~ 223 (311)
T PRK12435 215 YAIGWQSEG 223 (311)
T ss_pred CeEeeecCC
Confidence 999999996
No 7
>PRK00035 hemH ferrochelatase; Reviewed
Probab=100.00 E-value=4.2e-60 Score=460.22 Aligned_cols=236 Identities=45% Similarity=0.742 Sum_probs=219.0
Q ss_pred CCceEEEEEccCCCCCcCcHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhccchhhHHhhcccCCCCchhHHHHHHH
Q 019457 97 EDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQA 176 (340)
Q Consensus 97 ~~k~aVLLlNlG~P~s~~dV~~FL~~~l~D~~VI~lP~~~~~~~~~L~~lI~~~R~~ksa~~Y~~IGggSPL~~~T~~Qa 176 (340)
.+|+||||+|||||++++||++||+|||+||+|+++|.++|+ ++|+++|+++|++|++++|+.|||||||+.+|++|+
T Consensus 3 ~~k~~vll~n~G~P~~~~~v~~fl~~~~~d~~v~~~~~~~~~--~~l~~~i~~~r~~~~~~~Y~~ig~gSPl~~~t~~q~ 80 (333)
T PRK00035 3 MPKDAVLLLNLGGPETPEDVRPFLKNFLSDRRVIDLPRPLWQ--PLLAGIILPERLPKVAKHYASIGGGSPLNVITRRQA 80 (333)
T ss_pred CCceEEEEEeCCCCCCHHHHHHHHHHHcCCCCcccCCHHHHH--HHHHHHhhhhhHHHHHHHHHHcCCCChhHHHHHHHH
Confidence 367999999999999999999999999999999999998764 689999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCceeEeeeeccCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhhccCCCCCEEE
Q 019457 177 QALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSI 256 (340)
Q Consensus 177 ~~L~~~L~~~g~~~~V~~aMrY~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~~~~~~~~~~~~v~~ 256 (340)
++|++.|++.+.++.|++||+||+|+++|+|++|+++|+++|+++|||||||.+|+|++.+.+.+++++... .+++++
T Consensus 81 ~~L~~~l~~~~~~~~V~~am~y~~P~i~eal~~l~~~G~~~IivlPL~p~~s~~t~gs~~~~i~~~~~~~~~--~~~i~~ 158 (333)
T PRK00035 81 EALQAELAARGPDLPVYLGMRYWNPSIEEALEALKADGVDRIVVLPLYPQYSYSTTASYFEDLARALAKLRL--QPEIRF 158 (333)
T ss_pred HHHHHHHhccCCCceEEEeecCCCCCHHHHHHHHHhcCCCEEEEEECCCccccccHHHHHHHHHHHHHhcCC--CCcEEE
Confidence 999999987777899999999999999999999999999999999999999999999999999999877542 368999
Q ss_pred ecCCCCChHHHHHHHHHHHHHHhhcCCC-CceEEEEEecCCchhhhccCCCchHHHHHHHHHHHHHHhhccCC-CCCeEE
Q 019457 257 IRSWYQREGYVNSMADLIQKELGKFQKP-EEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGI-NNDHTL 334 (340)
Q Consensus 257 I~~~~~~p~yI~a~a~~I~~~L~~~~~~-~~~~LlFSaHglP~~~ie~~GDpY~~q~~~T~~~Iae~L~~~gl-~~~~~l 334 (340)
+++|++||.||++++++|++++++.+.+ ++..||||+||+|.++++ +||||.+||++|+++|++++ |+ ..+|.+
T Consensus 159 i~~~~~~p~~i~~l~~~I~~~~~~~~~~~~~~~llfs~HG~P~~~~~-~gd~Y~~~~~~t~~~l~~~l---~~~~~~~~~ 234 (333)
T PRK00035 159 IRSYYDHPGYIEALAESIREALAKHGEDPEPDRLLFSAHGLPQRYID-KGDPYQQQCEETARLLAEAL---GLPDEDYDL 234 (333)
T ss_pred eCCccCCHHHHHHHHHHHHHHHHhcCcccCCcEEEEecCCCchHHhh-cCCChHHHHHHHHHHHHHHh---CCCCCCeEE
Confidence 9999999999999999999999876533 457899999999999985 69999999999999999999 65 357999
Q ss_pred EEecCC
Q 019457 335 AYQVWF 340 (340)
Q Consensus 335 ayQSrf 340 (340)
+|||||
T Consensus 235 ~fqs~~ 240 (333)
T PRK00035 235 TYQSRF 240 (333)
T ss_pred EeeCCC
Confidence 999986
No 8
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=100.00 E-value=7.6e-47 Score=333.06 Aligned_cols=159 Identities=46% Similarity=0.761 Sum_probs=149.9
Q ss_pred eEEEEEccCCCCCcCcHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhccchhhHHhhcccCCCCchhHHHHHHHHHH
Q 019457 100 VGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQAL 179 (340)
Q Consensus 100 ~aVLLlNlG~P~s~~dV~~FL~~~l~D~~VI~lP~~~~~~~~~L~~lI~~~R~~ksa~~Y~~IGggSPL~~~T~~Qa~~L 179 (340)
+||||+|||||++++||++||.+||+|++||++|.++ +++|+++|+++|++|++++|++|||||||+.+|++|+++|
T Consensus 1 ~~VLL~n~G~P~~~~~v~~yL~~~~~d~~vi~~p~~~---~~~l~~~I~~~r~~k~~~~Y~~ig~~SPL~~~t~~q~~~l 77 (159)
T cd03411 1 TAVLLVNLGGPESLEDVRPFLKNFLSDRRVIELPRPL---RPILAGIILPRRPPKVAKNYKKIGGGSPLNEITRAQAEAL 77 (159)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHcCCCCcccCCHHH---HHHHHHHhcccccHHHHHHHHHcCCCCccHHHHHHHHHHH
Confidence 5899999999999999999999999999999999865 6689999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCceeEeeeeccCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhhccCCCCCEEEecC
Q 019457 180 KTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRS 259 (340)
Q Consensus 180 ~~~L~~~g~~~~V~~aMrY~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~~~~~~~~~~~~v~~I~~ 259 (340)
++.|++.+.++.|++|||||+|+|+|+|++|+++|+++||++|||||||.+||||+++.+.+++.+... .+++++|++
T Consensus 78 ~~~L~~~~~~~~v~~amry~~P~i~~~l~~l~~~g~~~iivlPl~P~~S~~Tt~s~~~~~~~~~~~~~~--~~~~~~i~~ 155 (159)
T cd03411 78 EKALDERGIDVKVYLAMRYGPPSIEEALEELKADGVDRIVVLPLYPQYSASTTGSYLDEVERALKKLRP--APELRVIRS 155 (159)
T ss_pred HHHHhccCCCcEEEehHhcCCCCHHHHHHHHHHcCCCEEEEEECCcccccccHHHHHHHHHHHHHhcCC--CCcEEEeCc
Confidence 999987666799999999999999999999999999999999999999999999999999999887643 357999999
Q ss_pred CCCC
Q 019457 260 WYQR 263 (340)
Q Consensus 260 ~~~~ 263 (340)
||+|
T Consensus 156 ~~~~ 159 (159)
T cd03411 156 FYDH 159 (159)
T ss_pred cccC
Confidence 9986
No 9
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=99.57 E-value=5.2e-15 Score=127.81 Aligned_cols=68 Identities=43% Similarity=0.733 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEEecCCchhhhccCCCchHHHHHHHHHHHHHHhhccCC-CCCeEEEEecCC
Q 019457 268 NSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGI-NNDHTLAYQVWF 340 (340)
Q Consensus 268 ~a~a~~I~~~L~~~~~~~~~~LlFSaHglP~~~ie~~GDpY~~q~~~T~~~Iae~L~~~gl-~~~~~layQSrf 340 (340)
++|+++|++++++.+ +++..|||||||+|+++++ +||||.+||.+|+++|+++| |+ ..+|.++|||||
T Consensus 1 ~a~~~~I~~~~~~~~-~~~~~llfsaHgiP~~~~~-~gd~Y~~~~~~~~~~v~~~l---~~~~~~~~~~fqS~~ 69 (135)
T cd00419 1 EALADHIREALAELP-REKDRLLFSAHGLPVRDIK-KGDPYPDQCEETARLVAERL---GLPFDEYELAYQSRF 69 (135)
T ss_pred ChHHHHHHHHHHhcC-CCCCEEEEEcCCCHHHHhh-CCCCHHHHHHHHHHHHHHHh---CCCCCCEEEEecCCC
Confidence 478999999998874 4556899999999999996 69999999999999999999 54 347999999997
No 10
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=99.26 E-value=6.5e-11 Score=95.26 Aligned_cols=74 Identities=27% Similarity=0.350 Sum_probs=61.6
Q ss_pred CchhHHHHHHHHHHHHHHHhcCCCceeEeeeecc-CCCHHHHHHHHHHcCCCEEEEEecCCCccccchH-HHHHHHHHHH
Q 019457 166 SPLRKITDEQAQALKTALEAKNLPVNVYVGMRYW-YPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTG-SSIRVLQNIF 243 (340)
Q Consensus 166 SPL~~~T~~Qa~~L~~~L~~~g~~~~V~~aMrY~-~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtg-S~~~~l~~~~ 243 (340)
||.+..+++++++|++.++ +.+|++||+++ .|++++++++|.++|+++|+++||||+ +..++. ...+.+.+..
T Consensus 13 s~~~~~~~~~~~~l~~~~~----~~~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvvvPl~~~-~g~h~~~di~~~~~~~~ 87 (101)
T cd03409 13 DPYKKDIEAQAHNLAESLP----DFPYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVPLAPV-SGDEVFYDIDSEIGLVR 87 (101)
T ss_pred ccHHHHHHHHHHHHHHHCC----CCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeCccc-cChhhHHHHHHHHHHHH
Confidence 4677788889998887764 57899999999 999999999999999999999999999 555555 6666666655
Q ss_pred H
Q 019457 244 R 244 (340)
Q Consensus 244 ~ 244 (340)
.
T Consensus 88 ~ 88 (101)
T cd03409 88 K 88 (101)
T ss_pred H
Confidence 4
No 11
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=98.54 E-value=2e-06 Score=71.36 Aligned_cols=111 Identities=15% Similarity=0.150 Sum_probs=80.4
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhcCCCceeEeeeec-cCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHH
Q 019457 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRY-WYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQ 240 (340)
Q Consensus 162 IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~aMrY-~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~ 240 (340)
+|-||+.... .+..+.+.+.|.++.....|+.|+-. +.|.++++++++.+.|+++++++|+|=.-. ...+.+.
T Consensus 6 v~HGS~~~~~-~~~~~~l~~~l~~~~~~~~v~~afle~~~P~~~~~l~~l~~~g~~~i~vvP~fL~~G-----~h~~~i~ 79 (117)
T cd03414 6 VGRGSSDPDA-NADVAKIARLLEEGTGFARVETAFAAATRPSLPEALERLRALGARRVVVLPYLLFTG-----VLMDRIE 79 (117)
T ss_pred EcCCCCCHHH-HHHHHHHHHHHHHhcCCCeEEEEEecCCCCCHHHHHHHHHHcCCCEEEEEechhcCC-----chHHHHH
Confidence 3667775443 34667777777666545788989766 699999999999999999999999865532 2223344
Q ss_pred HHHHhhccCCCCCEEEecCCCCChHHHHHHHHHHHHHH
Q 019457 241 NIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKEL 278 (340)
Q Consensus 241 ~~~~~~~~~~~~~v~~I~~~~~~p~yI~a~a~~I~~~L 278 (340)
+.+.+....+...+.+-++...||.+++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~i~~~~pLG~~~~l~~~l~~r~~~~~ 117 (117)
T cd03414 80 EQVAELAAEPGIEFVLAPPLGPHPELAEALLERVREAL 117 (117)
T ss_pred HHHHHHHhCCCceEEECCCCCCCHHHHHHHHHHHHhhC
Confidence 43333221145678899999999999999999998753
No 12
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=98.51 E-value=1e-06 Score=74.51 Aligned_cols=111 Identities=18% Similarity=0.249 Sum_probs=79.1
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhcCCCceeEee-eeccCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHH
Q 019457 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVG-MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQ 240 (340)
Q Consensus 162 IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~a-MrY~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~ 240 (340)
+|-||+.. .+.+..+++.+.|.+.+....|++| |.|..|.+++++++|.+.|+++|+++|+|-.-..-+. +++.
T Consensus 7 v~hGS~~~-~~~~~~~~~~~~l~~~~~~~~v~~afle~~~P~l~~~l~~l~~~g~~~v~vvPlfl~~G~h~~----~dip 81 (126)
T PRK00923 7 VGHGSRLP-YNKEVVTKIAEKIKEKHPFYIVEVGFMEFNEPTIPEALKKLIGTGADKIIVVPVFLAHGVHTK----RDIP 81 (126)
T ss_pred EeCCCCCh-HHHHHHHHHHHHHHHhCCCCeEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEchhhccCcccc----cccc
Confidence 36677754 3446667777777766656678888 7899999999999999999999999999854322111 2222
Q ss_pred HHHH-------hh-ccCCCCCEEEecCCCCChHHHHHHHHHHHHH
Q 019457 241 NIFR-------ED-AYLSRLPVSIIRSWYQREGYVNSMADLIQKE 277 (340)
Q Consensus 241 ~~~~-------~~-~~~~~~~v~~I~~~~~~p~yI~a~a~~I~~~ 277 (340)
..+. +. ...+.+.+.+-++...||.+++.+.++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~i~~~~~lG~~p~l~~~~~~r~~e~ 126 (126)
T PRK00923 82 RILGLDEGEKEEIEEDGKDVEIVYAEPLGADERIADIVLKRANEA 126 (126)
T ss_pred hhhhcccccccchhhcCCCeEEEEcCCCCCCHHHHHHHHHHHhhC
Confidence 2221 00 0123456788999999999999999999863
No 13
>PLN02757 sirohydrochlorine ferrochelatase
Probab=98.41 E-value=8.4e-06 Score=72.18 Aligned_cols=115 Identities=15% Similarity=0.087 Sum_probs=79.5
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhcCCCceeEee-eeccCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHH
Q 019457 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVG-MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQ 240 (340)
Q Consensus 162 IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~a-MrY~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~ 240 (340)
+|-||+-.... +..+.+.+.|.+......|..| |-+.+|+++++|+++.+.|+++|+++|+|-.-..-+. +++.
T Consensus 19 vgHGSrd~~a~-~~~~~la~~l~~~~~~~~V~~aFle~~~Psl~eal~~l~~~g~~~vvVvP~FL~~G~H~~----~DIp 93 (154)
T PLN02757 19 VDHGSRRKESN-LMLEEFVAMYKQKTGHPIVEPAHMELAEPSIKDAFGRCVEQGASRVIVSPFFLSPGRHWQ----EDIP 93 (154)
T ss_pred EeCCCCCHHHH-HHHHHHHHHHHhhCCCCcEEEEEEecCCCCHHHHHHHHHHCCCCEEEEEEhhhcCCcchH----hHHH
Confidence 36677766533 3344455555443322234444 6789999999999999999999999999876433222 3344
Q ss_pred HHHHhhc-cCCCCCEEEecCCCCChHHHHHHHHHHHHHHhhc
Q 019457 241 NIFREDA-YLSRLPVSIIRSWYQREGYVNSMADLIQKELGKF 281 (340)
Q Consensus 241 ~~~~~~~-~~~~~~v~~I~~~~~~p~yI~a~a~~I~~~L~~~ 281 (340)
+.+.+.. ..+.+.+.+-++...||.+++++.+++++++...
T Consensus 94 ~~v~~~~~~~p~~~i~~~~pLG~~p~l~~ll~~Ri~eal~~~ 135 (154)
T PLN02757 94 ALTAEAAKEHPGVKYLVTAPIGLHELMVDVVNDRIKYCLSHV 135 (154)
T ss_pred HHHHHHHHHCCCcEEEECCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 4433222 2355678999999999999999999999998653
No 14
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=98.33 E-value=1.2e-05 Score=68.84 Aligned_cols=109 Identities=14% Similarity=0.140 Sum_probs=77.5
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhcCCCceeEee-eeccCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHH
Q 019457 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVG-MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQ 240 (340)
Q Consensus 162 IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~a-MrY~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~ 240 (340)
+|-||+..+..+ ..+.|.+.|.+. .+++|+.| |-+..|.++|+++++.+.|+++|+|+|+|-.-.. =+.+++.
T Consensus 6 vgHGSR~~~~~~-~~~~la~~l~~~-~~~~v~~afle~~~P~l~~~l~~l~~~G~~~ivVvPlFL~~G~----Hv~~DiP 79 (125)
T cd03415 6 ITHGSRRNTFNE-DMEEWAAYLERK-LGVPVYLTYNEYAEPNWRDLLNELLSEGYGHIIIALAFLGRGN----HVARDIM 79 (125)
T ss_pred EecCCCChHHHH-HHHHHHHHHHhc-cCCceEEEEeecCCCCHHHHHHHHHHCCCCEEEEehhhccCCc----chHHHHH
Confidence 467788776553 344455555432 24567777 7789999999999999999999999998765321 2234455
Q ss_pred HHHHhh--------cc-CCCCCEEEecCCCCChHHHHHHHHHHHH
Q 019457 241 NIFRED--------AY-LSRLPVSIIRSWYQREGYVNSMADLIQK 276 (340)
Q Consensus 241 ~~~~~~--------~~-~~~~~v~~I~~~~~~p~yI~a~a~~I~~ 276 (340)
+.+.+. .+ .+.+.+.+-++...||.+.+++++++++
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~i~~~~pLG~~p~l~~~l~~r~~~ 124 (125)
T cd03415 80 GELGVSRFYKWVMSKYGGKEILVYVTEPLADSPLVKLALFYRVKR 124 (125)
T ss_pred HHHHhhcccchhhhccCCCCceEEEeCCCCCCHHHHHHHHHHHHh
Confidence 555431 11 1335689999999999999999999876
No 15
>PRK02395 hypothetical protein; Provisional
Probab=98.24 E-value=3.8e-05 Score=73.78 Aligned_cols=129 Identities=17% Similarity=0.156 Sum_probs=92.4
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhcCCCceeEeeeeccCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHH
Q 019457 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQN 241 (340)
Q Consensus 162 IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~ 241 (340)
+|-||+......+..+.+.+.|.+++....|..||--..|.++++++++. .++|+++|+|=.-+.-+ .+++.+
T Consensus 7 vgHGSrr~~~~~~~~~~la~~l~~~~~~~~v~~~fle~~P~l~~~l~~l~---~~~ivVvPlfL~~G~Hv----~~DIP~ 79 (279)
T PRK02395 7 VGHGSHLNPDSALPTYAHAETIRARGLFDEVREGFWKEEPSLRQVLRTVE---SDEVYVVPLFISEGYFT----EQVIPR 79 (279)
T ss_pred EeCCCCCCcchHHHHHHHHHHHHhcCCCCeEEEeeccCCCCHHHHHHhcC---cCcEEEEeeEeccccch----hhhhHH
Confidence 37788766666677777777776655445788887779999999999985 58999999987332222 234555
Q ss_pred HHHhhc-----------cCCCCCEEEecCCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEEecCCc
Q 019457 242 IFREDA-----------YLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVP 297 (340)
Q Consensus 242 ~~~~~~-----------~~~~~~v~~I~~~~~~p~yI~a~a~~I~~~L~~~~~~~~~~LlFSaHglP 297 (340)
.+.... ......+.+-++...+|.+++++.+++++.+...+.+++..+|+-.||-+
T Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~plG~~p~l~~~l~~ri~e~~~~~~~~~~~alvlvgHGS~ 146 (279)
T PRK02395 80 ELGLGHDGPVADRGTLRALDGKTVHYTGPVGTHPAMADVIAARARSVTGDPDVGEDTALAVVGHGTE 146 (279)
T ss_pred HhcCCcCCccccccccccCCCceEEeCCCCCCChHHHHHHHHHHHHhhcCCCCCcCceEEEEecCCC
Confidence 554210 01145688888999999999999999998876432234567999999975
No 16
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=97.95 E-value=0.0002 Score=61.15 Aligned_cols=107 Identities=14% Similarity=0.084 Sum_probs=78.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcCCCceeEeeee------------ccCCCHHHHHHHHHHcCCCEEEEEecCCCcccc
Q 019457 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMR------------YWYPFTEEAVQQIKRDRITRLVVLPLYPQFSIS 230 (340)
Q Consensus 163 GggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~aMr------------Y~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~s 230 (340)
|-||--. ...+-.+++.+.+.+..+++.|++||. -..|.++++|++|.++|+++|+|+|++-.-
T Consensus 7 ~fGS~~~-~~~~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l~~--- 82 (127)
T cd03412 7 SFGTSYP-TAEKTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLHIIP--- 82 (127)
T ss_pred eCCCCCH-HHHHHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCeeEC---
Confidence 3345444 333455666677766667889999976 358999999999999999999999997543
Q ss_pred chHHHHHHHHHHHHhhccCCCCCEEEecCCCCChHHHHHHHHHHHH
Q 019457 231 TTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQK 276 (340)
Q Consensus 231 TtgS~~~~l~~~~~~~~~~~~~~v~~I~~~~~~p~yI~a~a~~I~~ 276 (340)
|.-.+++.+.+.+.. .+...+.+-++.-.++.-++.+++.|.+
T Consensus 83 --G~e~~di~~~v~~~~-~~~~~i~~g~pLl~~~~d~~~v~~al~~ 125 (127)
T cd03412 83 --GEEYEKLKREVDAFK-KGFKKIKLGRPLLYSPEDYEEVAAALKD 125 (127)
T ss_pred --cHHHHHHHHHHHHHh-CCCceEEEccCCCCCHHHHHHHHHHHHh
Confidence 444567777666544 2445688888888888888888877754
No 17
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=97.80 E-value=4.7e-05 Score=61.88 Aligned_cols=90 Identities=18% Similarity=0.225 Sum_probs=62.2
Q ss_pred HHHHHHHHhcCCCceeEeee-eccCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHH-HHHHHHHhhc-cCCCCC
Q 019457 177 QALKTALEAKNLPVNVYVGM-RYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIR-VLQNIFREDA-YLSRLP 253 (340)
Q Consensus 177 ~~L~~~L~~~g~~~~V~~aM-rY~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~-~l~~~~~~~~-~~~~~~ 253 (340)
+.+.+.|.+... ..|..|| -+..|.++++++++.+.|+++|+++|+|=.-. ...+ ++.+.+++.. ..+.+.
T Consensus 13 ~~la~~l~~~~~-~~v~~~fle~~~P~l~~~l~~l~~~g~~~ivvvP~fL~~G-----~h~~~DIp~~l~~~~~~~~~~~ 86 (105)
T PF01903_consen 13 EDLADRLRERLP-VPVEVAFLEFAEPSLEEALERLVAQGARRIVVVPYFLFPG-----YHVKRDIPEALAEARERHPGIE 86 (105)
T ss_dssp HHHHHHHHHHTS-SEEEEEESSCCCSCCHHCCHHHHCCTCSEEEEEEESSSSS-----HHHHCHHHHHHCHHHHCSTTEE
T ss_pred HHHHHHHHhhcC-CeEEEEEEecCCCCHHHHHHHHHHcCCCeEEEEeeeecCc-----cchHhHHHHHHHHHHhhCCceE
Confidence 444445544444 7788887 58999999999999999999999999987542 2222 3555554332 223456
Q ss_pred EEEecCCCCChHHHHHHHH
Q 019457 254 VSIIRSWYQREGYVNSMAD 272 (340)
Q Consensus 254 v~~I~~~~~~p~yI~a~a~ 272 (340)
+.+-++...||...+++++
T Consensus 87 v~~~~pLG~~p~l~~~l~e 105 (105)
T PF01903_consen 87 VRVAPPLGPHPLLAELLAE 105 (105)
T ss_dssp EEE---GGGSCCHHHHHH-
T ss_pred EEECCCCCCCHHHHHHHhC
Confidence 8899999999999998864
No 18
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=97.74 E-value=0.0005 Score=68.10 Aligned_cols=115 Identities=11% Similarity=0.128 Sum_probs=80.4
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHhcCCCceeEee-eeccCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHH
Q 019457 161 AIGGGSPLRKITDEQAQALKTALEAKNLPVNVYVG-MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVL 239 (340)
Q Consensus 161 ~IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~a-MrY~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~~l 239 (340)
.+|-||......+ ..+.|.+.|.++. +++|+.| |-+.+|.++++++++.+.|+++|+++|+|=.-. .=+.+++
T Consensus 11 LvgHGSRdp~~~~-~~~~La~~l~~~~-~~~V~~aFLE~~ePsl~eal~~l~~~G~~~IvVvPlFL~~G----~Hv~~DI 84 (335)
T PRK05782 11 LIGHGSRRETFNS-DMEGMANYLKEKL-GVPIYLTYNEFAEPNWRSLLNEIIKEGYRRVIIALAFLGRG----NHVFRDI 84 (335)
T ss_pred EEecCCCChHHHH-HHHHHHHHHHhcc-CCceEEEEeccCCCCHHHHHHHHHHCCCCEEEEecccccCC----cchhhhH
Confidence 3577888775553 3344555554432 3567777 778999999999999999999999999875422 1123445
Q ss_pred HHHHHh--------hcc-CCCCCEEEecCCCCChHHHHHHHHHHHHHHhhc
Q 019457 240 QNIFRE--------DAY-LSRLPVSIIRSWYQREGYVNSMADLIQKELGKF 281 (340)
Q Consensus 240 ~~~~~~--------~~~-~~~~~v~~I~~~~~~p~yI~a~a~~I~~~L~~~ 281 (340)
.+.+.. ..+ .+.+++.+-++...||.+++++.+++++++...
T Consensus 85 P~~L~~~~~~~~~~~~~~~~~i~i~l~~pLG~~p~l~~ll~~Rv~eal~~~ 135 (335)
T PRK05782 85 MGELGVQRLNSWEVSKISGKEVEFYVTEPLSDSPLVGLALYYRLARALDAL 135 (335)
T ss_pred HHHHHHhhhcchhhhhcCCCceeEEECCCCCCChHHHHHHHHHHHHHhhcC
Confidence 444442 111 123456889999999999999999999998654
No 19
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=97.66 E-value=0.00065 Score=66.71 Aligned_cols=107 Identities=16% Similarity=0.282 Sum_probs=75.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHhcCCCceeEeeeecc-----CCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHH
Q 019457 164 GGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYW-----YPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRV 238 (340)
Q Consensus 164 ggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~aMrY~-----~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~~ 238 (340)
.|+|=.....+.+++|.+.|+.. .++.+.+=-+.+ .|+++++|+++.++|+++|+++|. -|.+-...+..+
T Consensus 205 ~Gd~Y~~~~~~ta~~l~~~l~~~-~~~~~~fQS~~g~~~Wl~P~~~~~l~~l~~~G~k~V~vvP~--gFv~D~lETl~e- 280 (322)
T TIGR00109 205 EGDPYPAECEATTRLIAEKLGFP-NEYRLTWQSRVGPEPWLGPYTEELLEKLGEQGVQHIVVVPI--GFTADHLETLYE- 280 (322)
T ss_pred CCCChHHHHHHHHHHHHHHcCCC-CCeEEEEeCCCCCCCcCCCCHHHHHHHHHHcCCceEEEECC--cccccchhHHHh-
Confidence 57888888888899998888621 233322222444 999999999999999999999998 333222333222
Q ss_pred HH----HHHHhhccCCCCC-EEEecCCCCChHHHHHHHHHHHHHH
Q 019457 239 LQ----NIFREDAYLSRLP-VSIIRSWYQREGYVNSMADLIQKEL 278 (340)
Q Consensus 239 l~----~~~~~~~~~~~~~-v~~I~~~~~~p~yI~a~a~~I~~~L 278 (340)
+. +.+.+. ... +..++...++|.||+++++.|++.+
T Consensus 281 i~~e~~~~~~~~----G~~~~~~vp~lN~~p~fi~~l~~~v~~~~ 321 (322)
T TIGR00109 281 IDEEYREVAEDA----GGDKYQRCPALNAKPEFIEAMATLVKKKL 321 (322)
T ss_pred hhHHHHHHHHHc----CCCeEEECCCCCCCHHHHHHHHHHHHHhh
Confidence 21 223332 234 8999999999999999999998865
No 20
>PLN02449 ferrochelatase
Probab=97.52 E-value=0.0012 Score=68.24 Aligned_cols=113 Identities=17% Similarity=0.267 Sum_probs=79.1
Q ss_pred CCchhHHHHHHHHHHHHHHHhcC--CCceeEeeeecc-----CCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHH
Q 019457 165 GSPLRKITDEQAQALKTALEAKN--LPVNVYVGMRYW-----YPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIR 237 (340)
Q Consensus 165 gSPL~~~T~~Qa~~L~~~L~~~g--~~~~V~~aMrY~-----~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~ 237 (340)
|.|-...+++-+++|.+.|+..+ .++.+.+=-|.| .|+++|+|++|.++|+++|+++|.- |.+--..+. .
T Consensus 295 GDpY~~q~~~ta~lI~~~L~~~~~~~~~~layQSR~Gp~eWL~P~t~d~L~~L~~~Gvk~VlvvPig--FvSDhiETL-~ 371 (485)
T PLN02449 295 GDPYKAQMEECVDLIMEELKARGILNRHTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSLLAVPIS--FVSEHIETL-E 371 (485)
T ss_pred CCChHHHHHHHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCc--ccccchHHH-H
Confidence 57888888999999999997644 334433322334 8999999999999999999999973 222222322 2
Q ss_pred HHHHHHHhhccCCCC-CEEEecCCCCChHHHHHHHHHHHHHHhh
Q 019457 238 VLQNIFREDAYLSRL-PVSIIRSWYQREGYVNSMADLIQKELGK 280 (340)
Q Consensus 238 ~l~~~~~~~~~~~~~-~v~~I~~~~~~p~yI~a~a~~I~~~L~~ 280 (340)
++.-.+++......+ .+..|+.-.++|.||+++++.|.+.+..
T Consensus 372 EiDiE~re~a~e~G~~~~~rVP~LN~~p~FI~~La~lV~~~l~~ 415 (485)
T PLN02449 372 EIDMEYRELALESGIENWGRVPALGCEPTFISDLADAVIEALPY 415 (485)
T ss_pred HHHHHHHHHHHHcCCceEEEcCCCCCCHHHHHHHHHHHHHHhhc
Confidence 222222222211223 4889999999999999999999999864
No 21
>PRK00035 hemH ferrochelatase; Reviewed
Probab=97.52 E-value=0.0015 Score=63.95 Aligned_cols=108 Identities=18% Similarity=0.316 Sum_probs=70.9
Q ss_pred CchhHHHHHHHHHHHHHHHhcCCCceeEeeee-------ccCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHH-
Q 019457 166 SPLRKITDEQAQALKTALEAKNLPVNVYVGMR-------YWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIR- 237 (340)
Q Consensus 166 SPL~~~T~~Qa~~L~~~L~~~g~~~~V~~aMr-------Y~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~- 237 (340)
.|-....++.++.|.+.|... .-.+.+++. ...|+++++|+++.++|+++|+++|.. |.+--..+..+
T Consensus 208 d~Y~~~~~~t~~~l~~~l~~~--~~~~~~~fqs~~g~~~Wl~P~~~~~l~~l~~~g~k~V~v~P~~--Fv~D~lEtl~ei 283 (333)
T PRK00035 208 DPYQQQCEETARLLAEALGLP--DEDYDLTYQSRFGPEPWLEPYTDDTLEELAEKGVKKVVVVPPG--FVSDHLETLEEI 283 (333)
T ss_pred CChHHHHHHHHHHHHHHhCCC--CCCeEEEeeCCCCCCccCCCCHHHHHHHHHHcCCCeEEEECCe--eeccchhHHHHH
Confidence 444444566677777776521 113444444 367999999999999999999999974 33222222111
Q ss_pred --HHHHHHHhhccCCCCCEEEecCCCCChHHHHHHHHHHHHHHhh
Q 019457 238 --VLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGK 280 (340)
Q Consensus 238 --~l~~~~~~~~~~~~~~v~~I~~~~~~p~yI~a~a~~I~~~L~~ 280 (340)
.+.+.+.+.+ ...+..++...++|.|+++++++|++.++.
T Consensus 284 ~~e~~~~~~~~G---~~~~~~~~~ln~~~~~i~~l~~~v~~~~~~ 325 (333)
T PRK00035 284 DIEYREIAEEAG---GEEFRRIPCLNDSPEFIEALADLVRENLQG 325 (333)
T ss_pred HHHHHHHHHHcC---CceEEECCCCCCCHHHHHHHHHHHHHHhcC
Confidence 1222233321 125889999999999999999999997743
No 22
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=97.50 E-value=0.00042 Score=57.37 Aligned_cols=61 Identities=25% Similarity=0.451 Sum_probs=50.4
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhcCCCceeEeeeeccCCCHHHHHHHHHHcCCCEEEEEecCC
Q 019457 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYP 225 (340)
Q Consensus 162 IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eal~~l~~~G~~~IvvlPLyP 225 (340)
+|-||+... .+.-++|++.|.+.+. ..|++|+-=+.|.++++++++.+.|+++|+++||+=
T Consensus 6 vgHGSr~~~--~~~~~~l~~~l~~~~~-~~v~~~~lE~~P~i~~~l~~l~~~G~~~i~lvPl~L 66 (103)
T cd03413 6 MGHGTDHPS--NAVYAALEYVLREEDP-ANVFVGTVEGYPGLDDVLAKLKKAGIKKVTLMPLML 66 (103)
T ss_pred EECCCCchh--hhHHHHHHHHHHhcCC-CcEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEehhh
Confidence 477888875 3667778888876543 678888777999999999999999999999999964
No 23
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=97.25 E-value=0.0044 Score=50.01 Aligned_cols=66 Identities=26% Similarity=0.289 Sum_probs=47.9
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcCCCceeEee-eeccCCCHHHHHHHHHHcCCCEEEEEecCCCccc
Q 019457 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVG-MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSI 229 (340)
Q Consensus 163 GggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~a-MrY~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~ 229 (340)
+-||+.... .+..+.+.+.|.+......|+.| |....|.++++++++.++|+++++++|+|=.-..
T Consensus 6 ~hGS~~~~~-~~~~~~l~~~l~~~~~~~~v~~afle~~~p~~~~~l~~l~~~g~~~v~vvPlfl~~G~ 72 (101)
T cd03416 6 GHGSRDPRA-AEALEALAERLRERLPGDEVELAFLELAEPSLAEALDELAAQGATRIVVVPLFLLAGG 72 (101)
T ss_pred EcCCCCHHH-HHHHHHHHHHHHhhCCCCcEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEeeEeCCCc
Confidence 445655433 34455566666555445678878 5566999999999999999999999999776543
No 24
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=97.11 E-value=0.0049 Score=60.49 Aligned_cols=106 Identities=18% Similarity=0.331 Sum_probs=69.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHhcCCCceeEeee-------eccCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHH
Q 019457 164 GGSPLRKITDEQAQALKTALEAKNLPVNVYVGM-------RYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSI 236 (340)
Q Consensus 164 ggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~aM-------rY~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~ 236 (340)
.|.|-....++-+++|.+.|.-. + +.+|+ ..-.|+++++|+++.++|+++|+++|. -|.+-...+..
T Consensus 201 ~GdpY~~~~~~t~~~i~~~l~~~--~--~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G~~~V~v~p~--gFv~D~lETl~ 274 (316)
T PF00762_consen 201 KGDPYPAQCEETARLIAERLGLP--E--WRLAFQSRFGPGEWLGPSTEDVLEELAKEGVKRVVVVPP--GFVSDCLETLY 274 (316)
T ss_dssp CT-SHHHHHHHHHHHHHHHTTTS--S--EEEEEES-SSSS-BSSSBHHHHHHHHHHCT-SEEEEEET--T-SSSSHHHHC
T ss_pred CCCChHHHHHHHHHHHHHHcCCC--c--eEEEEECCCCCCCCccccHHHHHHHHHhcCCCeEEEECC--ccccccHhHHH
Confidence 46788888888888998888432 2 33443 334599999999999999999999997 33333334332
Q ss_pred HH---HHHHHHhhccCCCCCEEEecCCCCChHHHHHHHHHHHHHH
Q 019457 237 RV---LQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKEL 278 (340)
Q Consensus 237 ~~---l~~~~~~~~~~~~~~v~~I~~~~~~p~yI~a~a~~I~~~L 278 (340)
+. ..+.+.+.+. -.+..|+.-.++|.||+++++.|++.|
T Consensus 275 eidie~re~~~~~G~---~~~~~ip~lN~~~~fi~~La~~v~~~~ 316 (316)
T PF00762_consen 275 EIDIEYRELAEEAGG---EEFVRIPCLNDSPEFIEALADLVREHL 316 (316)
T ss_dssp CCCCHHHHHHHHHTC---CEEEE---STT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC---ceEEEeCCCCCCHHHHHHHHHHHHhCc
Confidence 11 2344444332 258999999999999999999999875
No 25
>COG2138 Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]
Probab=97.07 E-value=0.005 Score=58.58 Aligned_cols=125 Identities=19% Similarity=0.241 Sum_probs=86.0
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhcCCCceeEee-eeccCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHH
Q 019457 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVG-MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQ 240 (340)
Q Consensus 162 IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~a-MrY~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~ 240 (340)
+|-||++.... +..+++.+.+.+++....|..| |-+.+|.++++++.+..+|+++|+++|||=....=|+ +++-
T Consensus 8 vgHGsr~p~~~-~~~~~~a~~~~~~~~~~~v~~~f~e~~~P~l~~~~~al~~~G~~~ivvVPlfl~~g~H~~----~DIP 82 (245)
T COG2138 8 VGHGSRLPRGR-EVAEAIAARLEERGDFPPVRVAFLELAEPSLREALQALVARGVDRIVVVPLFLAAGYHTK----RDIP 82 (245)
T ss_pred eecCCCCccHH-HHHHHHHHHHHhhcCCccchhHHHHhcCCCHHHHHHHHHhcCCCeEEEeehhhccCchhh----cccH
Confidence 36788888774 4455555577776654556666 7788999999999999999999999999876544333 3444
Q ss_pred HHHHhhccCCCCCEEEecCCCCChHHHHHHHHHHHHHHhhcCCCCce-EEEEEecC
Q 019457 241 NIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEV-MIFFSAHG 295 (340)
Q Consensus 241 ~~~~~~~~~~~~~v~~I~~~~~~p~yI~a~a~~I~~~L~~~~~~~~~-~LlFSaHg 295 (340)
+.+...... ...+.+. ++..||.-.+.+.+++.+.....+ +++ .+++..||
T Consensus 83 ~~L~~~~~~-~~~~~~~-p~G~~~~~~~~~~~r~~~~~~~~~--~~~~~vv~~~~G 134 (245)
T COG2138 83 AELGLARQA-HPQVDLS-PLGTHPAVLDLLGQRLEDAGADEA--DDAERVVLEPRG 134 (245)
T ss_pred HHHHHhhhc-CCccccc-ccCCchHHHHHHHHHHHHhccccc--cccceEEEeccC
Confidence 444332211 1123333 899999999999999988876543 222 26666666
No 26
>PRK12435 ferrochelatase; Provisional
Probab=97.00 E-value=0.01 Score=58.16 Aligned_cols=111 Identities=10% Similarity=0.069 Sum_probs=74.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHhcCCCceeEeeee------ccCCCHHHHHHHHHHc-CCCEEEEEecCCCccccchHHHH
Q 019457 164 GGSPLRKITDEQAQALKTALEAKNLPVNVYVGMR------YWYPFTEEAVQQIKRD-RITRLVVLPLYPQFSISTTGSSI 236 (340)
Q Consensus 164 ggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~aMr------Y~~P~i~eal~~l~~~-G~~~IvvlPLyPqYS~sTtgS~~ 236 (340)
.|.|-....++-+++|.+.|.-. ++.+.+=-| .-.|+++|+|+++.++ |+++|+++|.- |.+--..+..
T Consensus 191 ~GDpY~~q~~~t~~~v~~~l~~~--~~~l~yQSr~~g~~~WL~P~t~d~l~~l~~~~G~k~v~vvpig--FvsDhlETl~ 266 (311)
T PRK12435 191 AGDPYPDQLEETADLIAEQANVE--HYAIGWQSEGNTPDPWLGPDVQDLTRDLYEEHGYKSFIYTPVG--FVAEHLEVLY 266 (311)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCC--CCeEeeecCCCCCCCCCCCCHHHHHHHHHHhcCCceEEEECCc--hhhhhHHHHH
Confidence 35788888888888888887532 344333223 3389999999999887 99999999962 2222223222
Q ss_pred HHHHHHHHhhccCCCCCEEEecCCCCChHHHHHHHHHHHHHHh
Q 019457 237 RVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELG 279 (340)
Q Consensus 237 ~~l~~~~~~~~~~~~~~v~~I~~~~~~p~yI~a~a~~I~~~L~ 279 (340)
++.-.+++........+..++.--++|.||+++++.|++.++
T Consensus 267 -Eldie~~e~a~~~G~~~~r~~~lN~~p~fi~~La~lv~~~~~ 308 (311)
T PRK12435 267 -DNDYECKVVTDEIGAKYYRPEMPNADPLFIDALADVVLKKLK 308 (311)
T ss_pred -HHHHHHHHHHHHcCCcEEeccCCCCCHHHHHHHHHHHHHHHh
Confidence 222112221111124567788899999999999999998874
No 27
>PRK02395 hypothetical protein; Provisional
Probab=96.43 E-value=0.05 Score=52.30 Aligned_cols=111 Identities=9% Similarity=-0.009 Sum_probs=73.1
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcCCCceeEeeeeccCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHH-HHHHH
Q 019457 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSI-RVLQN 241 (340)
Q Consensus 163 GggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~-~~l~~ 241 (340)
|-||+-...+.+...++.+.|.+....-.|+.|+--..|.++++++++. .++|+++|+|-.- |... +++.+
T Consensus 142 gHGS~~~~~a~~~~~~~a~~l~~~~~~~~V~~~fle~~P~l~~~l~~l~---~~~V~vvP~fL~~-----G~H~~~DIp~ 213 (279)
T PRK02395 142 GHGTERNENSAKAIYYHADRLRERGRFAEVEALFLDEEPEVDDWPDLFE---ADDVVVVPLFIAD-----GFHTQEDIPE 213 (279)
T ss_pred ecCCCCchhHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCHHHHHHHhC---CCeEEEEeeeccc-----CcchHhHHHH
Confidence 7778754444444444555554433223577776668999999998874 5899999997653 3221 22333
Q ss_pred HHHhhc------cCC----CCCEEEecCCCCChHHHHHHHHHHHHHHhhc
Q 019457 242 IFREDA------YLS----RLPVSIIRSWYQREGYVNSMADLIQKELGKF 281 (340)
Q Consensus 242 ~~~~~~------~~~----~~~v~~I~~~~~~p~yI~a~a~~I~~~L~~~ 281 (340)
.+.... ..+ ...+.+.++...||.+.+.+++++++++...
T Consensus 214 ~~~~~~~~~~g~~~~~~~~~~~i~~~~~LG~~p~l~~i~~~R~~ea~~~~ 263 (279)
T PRK02395 214 DMGLTDDYRTGYDVPTAVDGHRIWYAGAVGTEPLMADVILERAADAGADV 263 (279)
T ss_pred HHHHhhccccccCCCcccCCeeEEEecCCCCCHHHHHHHHHHHHHhhcCc
Confidence 222111 112 3457889999999999999999999998654
No 28
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=96.32 E-value=0.055 Score=52.05 Aligned_cols=92 Identities=18% Similarity=0.213 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhhccCCCCCEEEecCCCC------ChHHHHHHHHH
Q 019457 200 YPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQ------REGYVNSMADL 273 (340)
Q Consensus 200 ~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~~~~~~~~~~~~v~~I~~~~~------~p~yI~a~a~~ 273 (340)
-|+..++|++|.++|+++|+|.||.=-- |.=++.+.+..++... .-..+.+-++--. ++.=++++++.
T Consensus 57 i~~~~eaL~~L~~~G~~~V~VQplhiip-----G~Ey~~l~~~v~~~~~-~F~~i~~g~PLL~~~g~~~~~~D~~~va~a 130 (262)
T PF06180_consen 57 IDSPEEALAKLADEGYTEVVVQPLHIIP-----GEEYEKLRATVEAYKH-DFKKIVLGRPLLYTMGQENSPEDYEAVAEA 130 (262)
T ss_dssp ---HHHHHHHHHHCT--EEEEEE--SCS-----SHHHHHHHHHHHHHCC-CSSEEEEE--SCSS-----SHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCCEEEEeecceeC-----cHhHHHHHHHHHHhhc-cCCeEEecccccccccccCChHHHHHHHHH
Confidence 4889999999999999999999995432 5555566655544322 1113666666555 46666666666
Q ss_pred HHHHHhhcCCCCceEEEEEecCCchh
Q 019457 274 IQKELGKFQKPEEVMIFFSAHGVPVS 299 (340)
Q Consensus 274 I~~~L~~~~~~~~~~LlFSaHglP~~ 299 (340)
|.+.+... ..+..+||-.||.|..
T Consensus 131 L~~~~~~~--~~~~a~vlmGHGt~h~ 154 (262)
T PF06180_consen 131 LAEEFPKK--RKDEAVVLMGHGTPHP 154 (262)
T ss_dssp HHCCS-TT---TTEEEEEEE---SCH
T ss_pred HHHhcccc--CCCCEEEEEeCCCCCC
Confidence 65444322 2445799999999864
No 29
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=96.01 E-value=0.1 Score=51.56 Aligned_cols=113 Identities=16% Similarity=0.321 Sum_probs=75.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHhcCCCceeEee-----eeccCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHH
Q 019457 164 GGSPLRKITDEQAQALKTALEAKNLPVNVYVG-----MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRV 238 (340)
Q Consensus 164 ggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~a-----MrY~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~~ 238 (340)
.|.|-..+.++-+++|.+.|.-.-.++.+.+= ...-.|+++|++++|.+.|+++++++|.- |.+--..+ +.+
T Consensus 201 ~GDpY~~q~~~t~~li~e~lg~~~~~~~~~~QS~~G~~~WL~P~t~~~l~~L~~~g~k~iiv~pig--FvsDhlET-L~E 277 (320)
T COG0276 201 EGDPYPQQCQETTRLIAEALGLPEEEYDLTFQSRFGPEPWLQPYTDDLLEELGEKGVKKIIVVPIG--FVSDHLET-LYE 277 (320)
T ss_pred cCCchHHHHHHHHHHHHHHcCCCchheeEEeecCCCCCCCCCCCHHHHHHHHHhcCCCeEEEECCc--hhhhhHHH-HHH
Confidence 35687888888888888888632122322221 22346999999999999999999999972 22222222 222
Q ss_pred HHHHHHhhcc-CCCCCEEEecCCCCChHHHHHHHHHHHHHHh
Q 019457 239 LQNIFREDAY-LSRLPVSIIRSWYQREGYVNSMADLIQKELG 279 (340)
Q Consensus 239 l~~~~~~~~~-~~~~~v~~I~~~~~~p~yI~a~a~~I~~~L~ 279 (340)
+...+++... .......-|+.-.++|.||+++++.|++.+.
T Consensus 278 id~e~~e~~~~~Gg~~y~rip~lN~~p~fi~~la~lv~~~~~ 319 (320)
T COG0276 278 IDHEYRELAEEAGGKKYVRIPCLNDSPEFIDALADLVRELLN 319 (320)
T ss_pred HHHHHHHHHHHhCCccEEecCCCCCCHHHHHHHHHHHHHHhc
Confidence 3322222211 1225789999999999999999999998764
No 30
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=95.99 E-value=0.062 Score=46.46 Aligned_cols=62 Identities=18% Similarity=0.370 Sum_probs=46.8
Q ss_pred CCchhHHHHHHHHHHHHHHHhcCCCceeEeeee-------ccCCCHHHHHHHHHHcCCCEEEEEec-CCCcc
Q 019457 165 GSPLRKITDEQAQALKTALEAKNLPVNVYVGMR-------YWYPFTEEAVQQIKRDRITRLVVLPL-YPQFS 228 (340)
Q Consensus 165 gSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~aMr-------Y~~P~i~eal~~l~~~G~~~IvvlPL-yPqYS 228 (340)
|.|=...+.+.+++|.+.|.... ..+.+|+. ...|+++++|+++.++|+++|+++|. |....
T Consensus 36 gd~Y~~~~~~~~~~v~~~l~~~~--~~~~~~fqS~~g~~~Wl~P~~~~~l~~l~~~G~~~i~v~p~gF~~D~ 105 (135)
T cd00419 36 GDPYPDQCEETARLVAERLGLPF--DEYELAYQSRFGPGEWLEPSTDDALEELAKEGVKNVVVVPIGFVSDH 105 (135)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCC--CCEEEEecCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCcccccc
Confidence 46777888888999988886321 23444433 22999999999999999999999999 66543
No 31
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=95.18 E-value=0.1 Score=50.27 Aligned_cols=105 Identities=18% Similarity=0.342 Sum_probs=68.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcCCCceeEeeeeccCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHH------
Q 019457 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSI------ 236 (340)
Q Consensus 163 GggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~------ 236 (340)
|-|+|-... .-=.+|+..|++.+ .-+|++|.-=+.|.+++++++|++.|++++.++||.=. .|--.
T Consensus 148 GHGt~h~an--~~Y~~l~~~l~~~~-~~~v~vgtvEG~P~~~~vi~~L~~~g~k~V~L~PlMlV-----AGdHa~nDmaG 219 (262)
T PF06180_consen 148 GHGTPHPAN--AAYSALQAMLKKHG-YPNVFVGTVEGYPSLEDVIARLKKKGIKKVHLIPLMLV-----AGDHAKNDMAG 219 (262)
T ss_dssp E---SCHHH--HHHHHHHHHHHCCT--TTEEEEETTSSSBHHHHHHHHHHHT-SEEEEEEESSS-------HHHHCCCCS
T ss_pred eCCCCCCcc--HHHHHHHHHHHhCC-CCeEEEEEeCCCCCHHHHHHHHHhcCCCeEEEEecccc-----cchhhhhhhcC
Confidence 777776543 24466777787643 24689999999999999999999999999999999432 23221
Q ss_pred ---HHHHHHHHhhccCCCCCEE-EecCCCCChHHHHHHHHHHHHHHh
Q 019457 237 ---RVLQNIFREDAYLSRLPVS-IIRSWYQREGYVNSMADLIQKELG 279 (340)
Q Consensus 237 ---~~l~~~~~~~~~~~~~~v~-~I~~~~~~p~yI~a~a~~I~~~L~ 279 (340)
+.+...+++.+ +.++ +++.-.+.|.+.+.|.++|+++++
T Consensus 220 de~dSWks~L~~~G----~~v~~~l~GLGE~~~i~~ifi~hl~~ai~ 262 (262)
T PF06180_consen 220 DEEDSWKSRLEAAG----FEVTCVLKGLGEYPAIQQIFIEHLKEAIE 262 (262)
T ss_dssp SSTTSHHHHHHHTT-----EEEE----GGGSHHHHHHHHHHHHHHH-
T ss_pred CCcchHHHHHHHCC----CEEEEEeccCcCCHHHHHHHHHHHHHHhC
Confidence 22444455433 3333 678999999999999999999863
No 32
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=93.39 E-value=0.18 Score=40.05 Aligned_cols=41 Identities=22% Similarity=0.415 Sum_probs=33.5
Q ss_pred EEEEecCCchhhhccCCCchHHHHHHHHHHHHHHhhccCCCCCeEEEEecC
Q 019457 289 IFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDHTLAYQVW 339 (340)
Q Consensus 289 LlFSaHglP~~~ie~~GDpY~~q~~~T~~~Iae~L~~~gl~~~~~layQSr 339 (340)
|||.+||.|.. ++|...+++.++.|.+++. ..++.++|+|+
T Consensus 2 lllv~HGs~~~------s~~~~~~~~~~~~l~~~~~----~~~v~~a~~~~ 42 (101)
T cd03409 2 LLVVGHGSPYK------DPYKKDIEAQAHNLAESLP----DFPYYVGFQSG 42 (101)
T ss_pred EEEEECCCCCC------ccHHHHHHHHHHHHHHHCC----CCCEEEEEECC
Confidence 79999999842 5799999999999988862 24689999986
No 33
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=91.35 E-value=2.7 Score=39.86 Aligned_cols=81 Identities=16% Similarity=0.344 Sum_probs=64.5
Q ss_pred eeEeeeeccCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHH---------HHHHHHHHHhhccCCCCC-EEEecCC
Q 019457 191 NVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSS---------IRVLQNIFREDAYLSRLP-VSIIRSW 260 (340)
Q Consensus 191 ~V~~aMrY~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~---------~~~l~~~~~~~~~~~~~~-v~~I~~~ 260 (340)
+|++|--=+.|-+..+|+.|++.|++++-++||--. .|-. -+.+.+.+.+.+ ++ -.++...
T Consensus 169 ~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~PlMlv-----AG~Ha~nDMasddedswk~il~~~G----~~v~~~l~GL 239 (265)
T COG4822 169 NVFVAAVEGYPLVDTVIEYLRKNGIKEVHLIPLMLV-----AGDHAKNDMASDDEDSWKNILEKNG----FKVEVYLHGL 239 (265)
T ss_pred ceEEEEecCCCcHHHHHHHHHHcCCceEEEeeeEEe-----echhhhhhhcccchHHHHHHHHhCC----ceeEEEeecC
Confidence 789999999999999999999999999999998432 2221 134555566544 33 4578899
Q ss_pred CCChHHHHHHHHHHHHHHhh
Q 019457 261 YQREGYVNSMADLIQKELGK 280 (340)
Q Consensus 261 ~~~p~yI~a~a~~I~~~L~~ 280 (340)
...|.+-+.+.++|+.++++
T Consensus 240 GE~~~iq~ifi~Hik~aie~ 259 (265)
T COG4822 240 GENPAIQAIFIDHIKDAIER 259 (265)
T ss_pred CCcHHHHHHHHHHHHHHHhh
Confidence 99999999999999999875
No 34
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=91.27 E-value=1.1 Score=44.49 Aligned_cols=115 Identities=17% Similarity=0.276 Sum_probs=73.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHhcCC---CceeEee-eeccCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHH
Q 019457 164 GGSPLRKITDEQAQALKTALEAKNL---PVNVYVG-MRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVL 239 (340)
Q Consensus 164 ggSPL~~~T~~Qa~~L~~~L~~~g~---~~~V~~a-MrY~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~~l 239 (340)
.|.|-...-.+=.+.+-++|+.++. -+.-.+| +-.-.|..+|+++.|-..|.+.++++|..=. +--..+ +.++
T Consensus 244 ~GDpY~~Ei~atv~~iMeeL~~~N~y~lawQSkVGP~pWL~p~Tde~i~~lgk~g~knll~VPIaFv--SeHIET-L~Ei 320 (395)
T KOG1321|consen 244 AGDPYPAEIAATVDLIMEELKYKNPYRLAWQSKVGPLPWLGPATDEVIEGLGKKGVKNLLLVPIAFV--SEHIET-LHEI 320 (395)
T ss_pred cCCCcHHHHHHHHHHHHHHhccCCcchhhhhcccCCccccccchHHHHHHHHhhcccceEEEeehhh--hHHHHH-HHHh
Confidence 3456666666666677777765532 1233344 5567899999999999999999999998321 111111 1111
Q ss_pred HHHHHhhccCCCC-CEEEecCCCCChHHHHHHHHHHHHHHhhc
Q 019457 240 QNIFREDAYLSRL-PVSIIRSWYQREGYVNSMADLIQKELGKF 281 (340)
Q Consensus 240 ~~~~~~~~~~~~~-~v~~I~~~~~~p~yI~a~a~~I~~~L~~~ 281 (340)
+-.+.+......+ .++-+.+-..+|.||+++||.+.+.|+..
T Consensus 321 D~ey~e~a~k~gve~~~Rv~sln~~p~fI~~lADlV~ehL~s~ 363 (395)
T KOG1321|consen 321 DIEYIEEALKKGVENWKRVESLNGNPTFIEGLADLVAEHLKSN 363 (395)
T ss_pred hHHHHHHHHHHhhhhheeccCCCCCccHHHHHHHHHHHhhhhh
Confidence 1111111110111 37788899999999999999999999754
No 35
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=85.31 E-value=4.9 Score=34.63 Aligned_cols=105 Identities=16% Similarity=0.149 Sum_probs=69.9
Q ss_pred eEEEEEccCCCCCcCcHHHHHHhhcCCC--CcccCChhhhhhhhHHHHHHHhccchhhHHhhcccCCCCchhHHHHHHHH
Q 019457 100 VGVLLLNLGGPDTLHDVQPFLFNLFADP--DIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQ 177 (340)
Q Consensus 100 ~aVLLlNlG~P~s~~dV~~FL~~~l~D~--~VI~lP~~~~~~~~~L~~lI~~~R~~ksa~~Y~~IGggSPL~~~T~~Qa~ 177 (340)
.-|||.+.|+ +--+-=..|...||.+- .|++++.. .+...++...+ .+....|| -|-+..-+.....
T Consensus 3 ~~v~~a~~g~-D~Hd~g~~iv~~~l~~~GfeVi~lg~~-----~s~e~~v~aa~----e~~adii~-iSsl~~~~~~~~~ 71 (132)
T TIGR00640 3 PRILVAKMGQ-DGHDRGAKVIATAYADLGFDVDVGPLF-----QTPEEIARQAV----EADVHVVG-VSSLAGGHLTLVP 71 (132)
T ss_pred CEEEEEeeCC-CccHHHHHHHHHHHHhCCcEEEECCCC-----CCHHHHHHHHH----HcCCCEEE-EcCchhhhHHHHH
Confidence 3588999998 65555567888888777 66776531 12345544332 34455555 4677777778888
Q ss_pred HHHHHHHhcCC-CceeEeeeeccCCCHHHHHHHHHHcCCCEEE
Q 019457 178 ALKTALEAKNL-PVNVYVGMRYWYPFTEEAVQQIKRDRITRLV 219 (340)
Q Consensus 178 ~L~~~L~~~g~-~~~V~~aMrY~~P~i~eal~~l~~~G~~~Iv 219 (340)
.+.++|++.+. ++.|.+| +.+. .+-.+++++.|+++++
T Consensus 72 ~~~~~L~~~g~~~i~vivG---G~~~-~~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 72 ALRKELDKLGRPDILVVVG---GVIP-PQDFDELKEMGVAEIF 110 (132)
T ss_pred HHHHHHHhcCCCCCEEEEe---CCCC-hHhHHHHHHCCCCEEE
Confidence 88889988775 5778776 3332 3446678899999875
No 36
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=75.67 E-value=12 Score=32.47 Aligned_cols=60 Identities=20% Similarity=0.337 Sum_probs=40.4
Q ss_pred CCCChHHHHHHHHHHHHHHhhcCCCCceEEEEEecCCchhhhccCCCchHHHHHHHHHHHHHHhhccCCCCCe
Q 019457 260 WYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGINNDH 332 (340)
Q Consensus 260 ~~~~p~yI~a~a~~I~~~L~~~~~~~~~~LlFSaHglP~~~ie~~GDpY~~q~~~T~~~Iae~L~~~gl~~~~ 332 (340)
-|.++.=.+.+.+.|+..++.. .|++ .||+|+||-| .-|-.|. ++.||+.|-..|+..++
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~-~p~K-pLVlSfHG~t-----GtGKn~v------~~liA~~ly~~G~~S~~ 86 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANP-NPRK-PLVLSFHGWT-----GTGKNFV------SRLIAEHLYKSGMKSPF 86 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCC-CCCC-CEEEEeecCC-----CCcHHHH------HHHHHHHHHhcccCCCc
Confidence 4556666777788888887653 3443 5999999976 2466665 56788887666764443
No 37
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=60.85 E-value=15 Score=36.10 Aligned_cols=39 Identities=26% Similarity=0.436 Sum_probs=26.4
Q ss_pred CCceEEEEEecCCchhhhcc---CC-------CchHHHHHHHHHHHHHH
Q 019457 284 PEEVMIFFSAHGVPVSYVEK---AG-------DPYRDQMEECIYLIMQR 322 (340)
Q Consensus 284 ~~~~~LlFSaHglP~~~ie~---~G-------DpY~~q~~~T~~~Iae~ 322 (340)
|+...+||||||+|...-+. +| -|+-..++..++.-++.
T Consensus 65 p~~~~VIfsAHGVs~~v~~~a~~r~l~v~DATCPlVtKvh~~v~~~~~~ 113 (294)
T COG0761 65 PDGATVIFSAHGVSPAVREEAKERGLKVIDATCPLVTKVHKEVERYARE 113 (294)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCEEEecCCCcchHHHHHHHHHHhC
Confidence 45558999999999876421 23 37777777776655543
No 38
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=60.57 E-value=27 Score=38.43 Aligned_cols=127 Identities=14% Similarity=0.117 Sum_probs=79.3
Q ss_pred CCCceEEEEEccCCCCCcCcHHHHHHhhcCCCCc-ccCChhhhhhhhHHHHHHHhccchhhHHhhcccCCCCchhHHHHH
Q 019457 96 AEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDI-IRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDE 174 (340)
Q Consensus 96 ~~~k~aVLLlNlG~P~s~~dV~~FL~~~l~D~~V-I~lP~~~~~~~~~L~~lI~~~R~~ksa~~Y~~IGggSPL~~~T~~ 174 (340)
.+++.-|+|.++|++ .-+-=..|..+||.+-.+ +..+..+ .....++.-.+ .+...-++ -|-+..-+.+
T Consensus 579 ~g~rpkV~LatlG~d-~H~~ra~fv~~~l~~~GfeV~~~~~~----~s~e~~v~aa~----~~~a~ivv-lcs~d~~~~e 648 (714)
T PRK09426 579 EGRRPRILVAKMGQD-GHDRGAKVIATAFADLGFDVDIGPLF----QTPEEAARQAV----ENDVHVVG-VSSLAAGHKT 648 (714)
T ss_pred cCCCceEEEEecCCc-chhHhHHHHHHHHHhCCeeEecCCCC----CCHHHHHHHHH----HcCCCEEE-EeccchhhHH
Confidence 345567999999997 455566899999988754 2233211 12344444332 23333444 3556666677
Q ss_pred HHHHHHHHHHhcCC-CceeEeeeeccCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHH
Q 019457 175 QAQALKTALEAKNL-PVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIF 243 (340)
Q Consensus 175 Qa~~L~~~L~~~g~-~~~V~~aMrY~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~~ 243 (340)
++..+.+.|.+.|. ++.|++| +.|--++ .+++++.|+|..+ +..+.+-..++.+.+.+
T Consensus 649 ~~~~l~~~Lk~~G~~~v~vl~G---G~~~~~~-~~~l~~aGvD~~i-------~~g~d~~~~L~~l~~~l 707 (714)
T PRK09426 649 LVPALIEALKKLGREDIMVVVG---GVIPPQD-YDFLYEAGVAAIF-------GPGTVIADAAIDLLELL 707 (714)
T ss_pred HHHHHHHHHHhcCCCCcEEEEe---CCCChhh-HHHHHhCCCCEEE-------CCCCCHHHHHHHHHHHH
Confidence 88999999998875 4788888 7754333 3778889999765 23444444455554444
No 39
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=60.36 E-value=1.4e+02 Score=28.62 Aligned_cols=21 Identities=19% Similarity=0.420 Sum_probs=18.7
Q ss_pred HHHHHHHHHcCCCEEEEEecC
Q 019457 204 EEAVQQIKRDRITRLVVLPLY 224 (340)
Q Consensus 204 ~eal~~l~~~G~~~IvvlPLy 224 (340)
-.||++|++.|++++++-||+
T Consensus 63 ~~aL~klk~~gy~eviiQ~lh 83 (265)
T COG4822 63 IQALNKLKDQGYEEVIIQPLH 83 (265)
T ss_pred HHHHHHHHHccchheeeeeee
Confidence 368999999999999999985
No 40
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=53.96 E-value=85 Score=30.13 Aligned_cols=63 Identities=13% Similarity=0.037 Sum_probs=38.6
Q ss_pred HHHHHHhcCCCceeEeeeeccCCCHHHHHHHH---HHcCCCEEEEEecCCCccccchHHHHHHHHHHHHh
Q 019457 179 LKTALEAKNLPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRE 245 (340)
Q Consensus 179 L~~~L~~~g~~~~V~~aMrY~~P~i~eal~~l---~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~~~~ 245 (340)
++...+.....++|..|- +.+.++|+++.. .+.|++-++++| |.|...|-...++.+.+....
T Consensus 63 ~~~~~~~~~~~~~viagv--g~~~t~~ai~~a~~a~~~Gad~v~v~~--P~y~~~~~~~l~~~f~~va~a 128 (293)
T PRK04147 63 LEIVAEEAKGKVKLIAQV--GSVNTAEAQELAKYATELGYDAISAVT--PFYYPFSFEEICDYYREIIDS 128 (293)
T ss_pred HHHHHHHhCCCCCEEecC--CCCCHHHHHHHHHHHHHcCCCEEEEeC--CcCCCCCHHHHHHHHHHHHHh
Confidence 333344333356666664 567888887754 456999888887 667666555555555555443
No 41
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=53.33 E-value=1.5e+02 Score=28.11 Aligned_cols=54 Identities=22% Similarity=0.237 Sum_probs=36.5
Q ss_pred CCCceeEeeeeccCCCHHHHHHHH---HHcCCCEEEEEecCCCccccchHHHHHHHHHHHH
Q 019457 187 NLPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (340)
Q Consensus 187 g~~~~V~~aMrY~~P~i~eal~~l---~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~~~ 244 (340)
+.+++|..| =+..+++++++.. ++.|++-++++| |+|...|....++.+.+...
T Consensus 68 ~~~~~vi~g--v~~~st~~~i~~a~~a~~~Gad~v~v~~--P~~~~~s~~~l~~y~~~ia~ 124 (289)
T PF00701_consen 68 AGRVPVIAG--VGANSTEEAIELARHAQDAGADAVLVIP--PYYFKPSQEELIDYFRAIAD 124 (289)
T ss_dssp TTSSEEEEE--EESSSHHHHHHHHHHHHHTT-SEEEEEE--STSSSCCHHHHHHHHHHHHH
T ss_pred cCceEEEec--CcchhHHHHHHHHHHHhhcCceEEEEec--cccccchhhHHHHHHHHHHh
Confidence 346777776 4566899998855 457999998876 66666666666666655553
No 42
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=52.30 E-value=1.2e+02 Score=29.38 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=35.9
Q ss_pred HHhcCCCceeEeeeeccCCCHHHHHHHH---HHcCCCEEEEEecCCCccccchHHHHHHHHHHHH
Q 019457 183 LEAKNLPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (340)
Q Consensus 183 L~~~g~~~~V~~aMrY~~P~i~eal~~l---~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~~~ 244 (340)
.+..+..++|..|- +. .++++++.. .+.|++-++++| |.|...|-....+.+.+...
T Consensus 70 ~~~~~~~~pvi~gv--~~-~t~~~i~~~~~a~~~Gadav~~~p--P~y~~~~~~~i~~~f~~va~ 129 (303)
T PRK03620 70 VETTAGRVPVIAGA--GG-GTAQAIEYAQAAERAGADGILLLP--PYLTEAPQEGLAAHVEAVCK 129 (303)
T ss_pred HHHhCCCCcEEEec--CC-CHHHHHHHHHHHHHhCCCEEEECC--CCCCCCCHHHHHHHHHHHHH
Confidence 33333467777776 34 788888755 456999888866 66666555555555544443
No 43
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=50.58 E-value=1.4e+02 Score=28.09 Aligned_cols=53 Identities=17% Similarity=0.242 Sum_probs=34.6
Q ss_pred CCceeEeeeeccCCCHHHHHHHH---HHcCCCEEEEEecCCCccccchHHHHHHHHHHHH
Q 019457 188 LPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (340)
Q Consensus 188 ~~~~V~~aMrY~~P~i~eal~~l---~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~~~ 244 (340)
.+++|..|- +.+.++++++.. .+.|++-++++| |.|...|-...++.+.+..+
T Consensus 65 ~~~~vi~gv--~~~~~~~~i~~a~~a~~~Gad~v~v~p--P~y~~~~~~~~~~~~~~ia~ 120 (281)
T cd00408 65 GRVPVIAGV--GANSTREAIELARHAEEAGADGVLVVP--PYYNKPSQEGIVAHFKAVAD 120 (281)
T ss_pred CCCeEEEec--CCccHHHHHHHHHHHHHcCCCEEEECC--CcCCCCCHHHHHHHHHHHHh
Confidence 356777664 567888887744 456999888866 66666555555555555544
No 44
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=49.64 E-value=1.4e+02 Score=28.10 Aligned_cols=77 Identities=10% Similarity=0.153 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHhcCCCceeEeeeeccCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhhccCCC
Q 019457 172 TDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSR 251 (340)
Q Consensus 172 T~~Qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~~~~~~~~~~ 251 (340)
-.+.+..+++.+.+.| +.+.+......+-.++.++.|.+.++|-+|+.+..+.+ +.+.+..+. .
T Consensus 16 f~~ii~gIe~~a~~~G--y~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~~~~~---------~~l~~~~~~-----~ 79 (279)
T PF00532_consen 16 FAEIIRGIEQEAREHG--YQLLLCNTGDDEEKEEYIELLLQRRVDGIILASSENDD---------EELRRLIKS-----G 79 (279)
T ss_dssp HHHHHHHHHHHHHHTT--CEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESSSCTC---------HHHHHHHHT-----T
T ss_pred HHHHHHHHHHHHHHcC--CEEEEecCCCchHHHHHHHHHHhcCCCEEEEecccCCh---------HHHHHHHHc-----C
Confidence 4566777888887765 77778888888888899999999999999998554432 223332222 3
Q ss_pred CCEEEecCCCCCh
Q 019457 252 LPVSIIRSWYQRE 264 (340)
Q Consensus 252 ~~v~~I~~~~~~p 264 (340)
+|+.++....+++
T Consensus 80 iPvV~~~~~~~~~ 92 (279)
T PF00532_consen 80 IPVVLIDRYIDNP 92 (279)
T ss_dssp SEEEEESS-SCTT
T ss_pred CCEEEEEeccCCc
Confidence 5788888876665
No 45
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=47.78 E-value=1.1e+02 Score=28.28 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=31.8
Q ss_pred HHHhcCCCceeEe--eee--ccCCCHHHHHHHHHHcCCCEEEEEecC
Q 019457 182 ALEAKNLPVNVYV--GMR--YWYPFTEEAVQQIKRDRITRLVVLPLY 224 (340)
Q Consensus 182 ~L~~~g~~~~V~~--aMr--Y~~P~i~eal~~l~~~G~~~IvvlPLy 224 (340)
.+.+.|.++.+.+ +++ +...++.+.++.+.+.|++.|.+....
T Consensus 123 ~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~ 169 (265)
T cd03174 123 AAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTV 169 (265)
T ss_pred HHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhc
Confidence 4445665555554 677 778888999999999999988866553
No 46
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=47.70 E-value=22 Score=33.45 Aligned_cols=48 Identities=25% Similarity=0.410 Sum_probs=36.1
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhcCCCceeEeeeeccCCCHHHHHHHHHHcCCCEEEEEecCC
Q 019457 163 GGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYP 225 (340)
Q Consensus 163 GggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eal~~l~~~G~~~IvvlPLyP 225 (340)
|-||.++.+|.+--..| |+ | ++.|.||-.+++|++.|++.|+++.=|-
T Consensus 9 G~gsR~~plT~~tpK~L---lk-------V-----~g~plIErqI~~L~e~gI~dI~IVvGYl 56 (231)
T COG4750 9 GLGSRFVPLTQSTPKSL---LK-------V-----NGEPLIERQIEQLREAGIDDITIVVGYL 56 (231)
T ss_pred ccccccccccccCChHH---HH-------h-----cCcccHHHHHHHHHHCCCceEEEEeeeh
Confidence 55677777776554443 22 2 4899999999999999999999987543
No 47
>PLN02757 sirohydrochlorine ferrochelatase
Probab=47.35 E-value=39 Score=29.85 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=18.8
Q ss_pred CCceEEEEEccCCCCC--cCcHHHHHHhh
Q 019457 97 EDKVGVLLLNLGGPDT--LHDVQPFLFNL 123 (340)
Q Consensus 97 ~~k~aVLLlNlG~P~s--~~dV~~FL~~~ 123 (340)
.++.||||+..|+.+. .++++.+...+
T Consensus 11 ~~~~~lllvgHGSrd~~a~~~~~~la~~l 39 (154)
T PLN02757 11 GDKDGVVIVDHGSRRKESNLMLEEFVAMY 39 (154)
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4467999999999984 34555554444
No 48
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=46.36 E-value=34 Score=33.71 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCCceeEeeeeccCCCHHHHHHHHHHcCCCEEEEEecC
Q 019457 178 ALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLY 224 (340)
Q Consensus 178 ~L~~~L~~~g~~~~V~~aMrY~~P~i~eal~~l~~~G~~~IvvlPLy 224 (340)
.+.+.+.+.|.+..|.-| .=.+|+++|.++.+.+-+.+++++||==
T Consensus 107 g~~~lf~~~Gv~~vi~gg-qt~nPS~~dl~~Ai~~~~a~~VivLPNn 152 (313)
T PF13684_consen 107 GLAELFRSLGVDVVISGG-QTMNPSTEDLLNAIEKVGADEVIVLPNN 152 (313)
T ss_pred cHHHHHHhCCCeEEEeCC-CCCCCCHHHHHHHHHhCCCCeEEEEeCC
Confidence 345555555654444432 2368999999999999999999999963
No 49
>PLN02417 dihydrodipicolinate synthase
Probab=45.78 E-value=1.3e+02 Score=28.71 Aligned_cols=66 Identities=9% Similarity=0.115 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCCCceeEeeeeccCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHHHHH
Q 019457 175 QAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (340)
Q Consensus 175 Qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eal~~l~---~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~~~ 244 (340)
+.+.++...+.....++|..| -+.+.++++++..+ +.|+|-++++| |.|...|-...++.+.+..+
T Consensus 56 r~~~~~~~~~~~~~~~pvi~g--v~~~~t~~~i~~a~~a~~~Gadav~~~~--P~y~~~~~~~i~~~f~~va~ 124 (280)
T PLN02417 56 HIMLIGHTVNCFGGKIKVIGN--TGSNSTREAIHATEQGFAVGMHAALHIN--PYYGKTSQEGLIKHFETVLD 124 (280)
T ss_pred HHHHHHHHHHHhCCCCcEEEE--CCCccHHHHHHHHHHHHHcCCCEEEEcC--CccCCCCHHHHHHHHHHHHh
Confidence 333344334433334566654 35677888877543 56888777766 55666555555555554433
No 50
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=44.66 E-value=47 Score=33.52 Aligned_cols=77 Identities=22% Similarity=0.207 Sum_probs=59.2
Q ss_pred eEeeeeccCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhhccCCCCCEEEecCCCCChHHHHHHH
Q 019457 192 VYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMA 271 (340)
Q Consensus 192 V~~aMrY~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~~~~~~~~~~~~v~~I~~~~~~p~yI~a~a 271 (340)
|.+| -.|.|.--++.+.+.|+++|+++.-|=. .|..+.+.+.+.. ++.+.++-+.-+.|..-+-=+
T Consensus 35 Vpfg---n~pmI~hqieal~nsGi~~I~la~~y~s------~sl~~~~~k~y~~-----~lgVei~~s~eteplgtaGpl 100 (371)
T KOG1322|consen 35 VPFG---NKPMILHQIEALINSGITKIVLATQYNS------ESLNRHLSKAYGK-----ELGVEILASTETEPLGTAGPL 100 (371)
T ss_pred cccC---cchhhHHHHHHHHhCCCcEEEEEEecCc------HHHHHHHHHHhhh-----ccceEEEEEeccCCCcccchH
Confidence 5566 6899999999999999999999987644 2345555555422 345888888888888888888
Q ss_pred HHHHHHHhhcC
Q 019457 272 DLIQKELGKFQ 282 (340)
Q Consensus 272 ~~I~~~L~~~~ 282 (340)
+.+++.|..+.
T Consensus 101 ~laR~~L~~~~ 111 (371)
T KOG1322|consen 101 ALARDFLWVFE 111 (371)
T ss_pred HHHHHHhhhcC
Confidence 99999998764
No 51
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=44.59 E-value=1.5e+02 Score=29.99 Aligned_cols=79 Identities=23% Similarity=0.314 Sum_probs=51.9
Q ss_pred HHhhcccC----CCCchhHHHH--HHHHHHHHHHHhcCCCceeEeeeeccCCC--HHHHHHHHHHcCCCEEEEEecCCCc
Q 019457 156 KEGYAAIG----GGSPLRKITD--EQAQALKTALEAKNLPVNVYVGMRYWYPF--TEEAVQQIKRDRITRLVVLPLYPQF 227 (340)
Q Consensus 156 a~~Y~~IG----ggSPL~~~T~--~Qa~~L~~~L~~~g~~~~V~~aMrY~~P~--i~eal~~l~~~G~~~IvvlPLyPqY 227 (340)
++.+.+-| ||-||..+.+ +-+++|+.++ |.++-+.+ |.++. -+++++.|.++|.|+|-+=|- +.
T Consensus 74 a~~~~a~GasiTGGdPl~~ieR~~~~ir~LK~ef---G~~fHiHL---YT~g~~~~~e~l~~L~eAGLDEIRfHp~--~~ 145 (353)
T COG2108 74 AKLMDALGASITGGDPLLEIERTVEYIRLLKDEF---GEDFHIHL---YTTGILATEEALKALAEAGLDEIRFHPP--RP 145 (353)
T ss_pred HHHhccccccccCCChHHHHHHHHHHHHHHHHhh---ccceeEEE---eeccccCCHHHHHHHHhCCCCeEEecCC--Cc
Confidence 35555554 7899998865 4566666655 33444444 55443 488999999999999999887 33
Q ss_pred cccchHHHHHHHHHH
Q 019457 228 SISTTGSSIRVLQNI 242 (340)
Q Consensus 228 S~sTtgS~~~~l~~~ 242 (340)
.......+++.+..+
T Consensus 146 ~~~~~e~~i~~l~~A 160 (353)
T COG2108 146 GSKSSEKYIENLKIA 160 (353)
T ss_pred cccccHHHHHHHHHH
Confidence 344444555555544
No 52
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=43.41 E-value=1.5e+02 Score=28.64 Aligned_cols=63 Identities=8% Similarity=0.097 Sum_probs=38.1
Q ss_pred HHHHHHhcCCCceeEeeeeccCCCHHHHHHHH---HHcCCCEEEEEecCCCccccchHHHHHHHHHHHHh
Q 019457 179 LKTALEAKNLPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRE 245 (340)
Q Consensus 179 L~~~L~~~g~~~~V~~aMrY~~P~i~eal~~l---~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~~~~ 245 (340)
++...+.....++|..|- +...++|+++.. .+.|++-++++| |.|...+-...++.+......
T Consensus 59 ~~~~~~~~~g~~pvi~gv--~~~~t~~ai~~a~~A~~~Gad~v~v~p--P~y~~~~~~~l~~~f~~ia~a 124 (294)
T TIGR02313 59 IENAIDQIAGRIPFAPGT--GALNHDETLELTKFAEEAGADAAMVIV--PYYNKPNQEALYDHFAEVADA 124 (294)
T ss_pred HHHHHHHhCCCCcEEEEC--CcchHHHHHHHHHHHHHcCCCEEEEcC--ccCCCCCHHHHHHHHHHHHHh
Confidence 333343333356666553 457788887744 346999888877 667666655555555555443
No 53
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=42.64 E-value=2.4e+02 Score=24.98 Aligned_cols=48 Identities=23% Similarity=0.379 Sum_probs=31.4
Q ss_pred CCchhHHHHHHHHHHHHHHHhcCCCceeEeeeeccCCCHH--HHHHHHH-HcCCC
Q 019457 165 GSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTE--EAVQQIK-RDRIT 216 (340)
Q Consensus 165 gSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~--eal~~l~-~~G~~ 216 (340)
.+||...-.+||+++.+.|.....++... |+.|... ++.+.+. ..|.+
T Consensus 26 d~pLt~~G~~QA~~l~~~l~~~~~~~~~i----~sS~l~Ra~~TA~~~a~~~~~~ 76 (208)
T COG0406 26 DSPLTEEGRAQAEALAERLAARDIGFDAI----YSSPLKRAQQTAEPLAEELGLP 76 (208)
T ss_pred CCCCCHHHHHHHHHHHHHHhhcCCCCCEE----EECchHHHHHHHHHHHHhcCCC
Confidence 46999999999999999998543222222 6777763 3444444 33544
No 54
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=41.97 E-value=1.5e+02 Score=28.28 Aligned_cols=52 Identities=23% Similarity=0.227 Sum_probs=32.6
Q ss_pred CceeEeeeeccCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHHHHH
Q 019457 189 PVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (340)
Q Consensus 189 ~~~V~~aMrY~~P~i~eal~~l~---~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~~~ 244 (340)
.++|..|- +...++++++..+ +.|+|-++++| |.|-..|-...++.+.+..+
T Consensus 67 ~~~vi~gv--~~~s~~~~i~~a~~a~~~Gad~v~v~p--P~y~~~~~~~i~~~~~~i~~ 121 (285)
T TIGR00674 67 RVPVIAGT--GSNATEEAISLTKFAEDVGADGFLVVT--PYYNKPTQEGLYQHFKAIAE 121 (285)
T ss_pred CCeEEEeC--CCccHHHHHHHHHHHHHcCCCEEEEcC--CcCCCCCHHHHHHHHHHHHh
Confidence 56777663 6677888887544 46999888876 55555454444454444433
No 55
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=41.79 E-value=1.7e+02 Score=25.68 Aligned_cols=97 Identities=10% Similarity=0.086 Sum_probs=56.4
Q ss_pred eccCCCH--HHHHHHHHHcCCCEEEEEecCCCcc-----ccchHHHHHHHHHHHHhhccCCCCCEEEe--cCCCCChHHH
Q 019457 197 RYWYPFT--EEAVQQIKRDRITRLVVLPLYPQFS-----ISTTGSSIRVLQNIFREDAYLSRLPVSII--RSWYQREGYV 267 (340)
Q Consensus 197 rY~~P~i--~eal~~l~~~G~~~IvvlPLyPqYS-----~sTtgS~~~~l~~~~~~~~~~~~~~v~~I--~~~~~~p~yI 267 (340)
+|-+|-. ..++++..+. +|+++++|-.-+.. ..|.+--++.+.+++... +.+.+..+ +....+|.--
T Consensus 7 ~F~P~H~GHl~li~~a~~~-~d~v~vi~~~~~~~~~~~~~~~~~~R~~mi~~a~~~~---~~~~v~~~~~~d~~~~~~~w 82 (158)
T cd02167 7 KFAPLHTGHVYLIYKALSQ-VDELLIIVGSDDTRDDARTGLPLEKRLRWLREIFPDQ---ENIVVHTLNEPDIPEYPNGW 82 (158)
T ss_pred ccCCCCHHHHHHHHHHHHH-CCEEEEEECCCCcccccCCCCCHHHHHHHHHHHhcCC---CCEEEEeCCCCCCCCCchhH
Confidence 4555544 3456665554 79999999754433 356666677777776542 22333333 3444455557
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEEEecCCch
Q 019457 268 NSMADLIQKELGKFQKPEEVMIFFSAHGVPV 298 (340)
Q Consensus 268 ~a~a~~I~~~L~~~~~~~~~~LlFSaHglP~ 298 (340)
+.|+..|+..+.+... .+..++||.|-...
T Consensus 83 ~~w~~~v~~~v~~~~~-~~~~~vf~~~~~~~ 112 (158)
T cd02167 83 DIWSNRVKTLIAENTR-CRPDIVFTAEEYEA 112 (158)
T ss_pred HHHHHHHHHHHhhhcC-CCCCEEEEccCcch
Confidence 7778889888864311 12246788776543
No 56
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=41.76 E-value=1.5e+02 Score=28.54 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=34.5
Q ss_pred CCceeEeeeeccCCCHHHHHHHHH---HcCCCEEEEEecCCCccccchHHHHHHHHHHHH
Q 019457 188 LPVNVYVGMRYWYPFTEEAVQQIK---RDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (340)
Q Consensus 188 ~~~~V~~aMrY~~P~i~eal~~l~---~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~~~ 244 (340)
.+++|..+-- . .++++++..+ +.|++-++++| |.|-..+-...++.+.+...
T Consensus 73 g~~pvi~gv~--~-~t~~ai~~a~~a~~~Gadav~~~p--P~y~~~s~~~i~~~f~~v~~ 127 (296)
T TIGR03249 73 GKVPVYTGVG--G-NTSDAIEIARLAEKAGADGYLLLP--PYLINGEQEGLYAHVEAVCE 127 (296)
T ss_pred CCCcEEEecC--c-cHHHHHHHHHHHHHhCCCEEEECC--CCCCCCCHHHHHHHHHHHHh
Confidence 3577887763 3 5899888654 46999887766 77766665555555555444
No 57
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=41.69 E-value=1.7e+02 Score=28.09 Aligned_cols=58 Identities=10% Similarity=-0.022 Sum_probs=36.6
Q ss_pred HHhcCCCceeEeeeeccCCCHHHHHHHH---HHcCCCEEEEEecCCCccccchHHHHHHHHHHHH
Q 019457 183 LEAKNLPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (340)
Q Consensus 183 L~~~g~~~~V~~aMrY~~P~i~eal~~l---~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~~~ 244 (340)
.+.....++|..|. +...++++++.. ++.|+|-++++| |.|...|-...++.+.+...
T Consensus 64 ~~~~~~~~pvi~gv--~~~~t~~~i~la~~a~~~Gad~v~v~~--P~y~~~~~~~i~~yf~~v~~ 124 (290)
T TIGR00683 64 KDEAKDQIALIAQV--GSVNLKEAVELGKYATELGYDCLSAVT--PFYYKFSFPEIKHYYDTIIA 124 (290)
T ss_pred HHHhCCCCcEEEec--CCCCHHHHHHHHHHHHHhCCCEEEEeC--CcCCCCCHHHHHHHHHHHHh
Confidence 33333356666653 355788887754 456999888866 77777776666666665544
No 58
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=41.23 E-value=52 Score=28.43 Aligned_cols=80 Identities=19% Similarity=0.217 Sum_probs=53.7
Q ss_pred CCcccCChhhhhhhhHHHHHHHhccchhhHHhhcccCCCCchhHHHHHHHHHHHHHHHhcCC-CceeEeeeeccCCCH--
Q 019457 127 PDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNL-PVNVYVGMRYWYPFT-- 203 (340)
Q Consensus 127 ~~VI~lP~~~~~~~~~L~~lI~~~R~~ksa~~Y~~IGggSPL~~~T~~Qa~~L~~~L~~~g~-~~~V~~aMrY~~P~i-- 203 (340)
=.||+++. .-+...++...+ .+.=..|| -|-|+..|......+.+.|.+.|. +++|.+| +.+.+
T Consensus 28 feVidLG~-----~v~~e~~v~aa~----~~~adiVg-lS~L~t~~~~~~~~~~~~l~~~gl~~v~vivG---G~~~i~~ 94 (128)
T cd02072 28 FNVVNLGV-----LSPQEEFIDAAI----ETDADAIL-VSSLYGHGEIDCKGLREKCDEAGLKDILLYVG---GNLVVGK 94 (128)
T ss_pred CEEEECCC-----CCCHHHHHHHHH----HcCCCEEE-EeccccCCHHHHHHHHHHHHHCCCCCCeEEEE---CCCCCCh
Confidence 36777753 124566655432 12223344 588888888888888889988875 7889998 55443
Q ss_pred ---HHHHHHHHHcCCCEEE
Q 019457 204 ---EEAVQQIKRDRITRLV 219 (340)
Q Consensus 204 ---~eal~~l~~~G~~~Iv 219 (340)
++..++|++.|++++.
T Consensus 95 ~d~~~~~~~L~~~Gv~~vf 113 (128)
T cd02072 95 QDFEDVEKRFKEMGFDRVF 113 (128)
T ss_pred hhhHHHHHHHHHcCCCEEE
Confidence 5566779999999763
No 59
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=41.00 E-value=2.1e+02 Score=27.32 Aligned_cols=65 Identities=11% Similarity=0.011 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCCceeEeeeeccCCCHHHHHHH---HHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHh
Q 019457 177 QALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQ---IKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRE 245 (340)
Q Consensus 177 ~~L~~~L~~~g~~~~V~~aMrY~~P~i~eal~~---l~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~~~~ 245 (340)
+.++...+.....++|..|- +...++|+++. .++.|++-++++| |.|...|-...++.+.+..+.
T Consensus 58 ~~~~~~~~~~~~~~~viagv--~~~~~~~ai~~a~~a~~~Gad~v~~~~--P~y~~~~~~~i~~~~~~v~~a 125 (288)
T cd00954 58 QIAEIVAEAAKGKVTLIAHV--GSLNLKESQELAKHAEELGYDAISAIT--PFYYKFSFEEIKDYYREIIAA 125 (288)
T ss_pred HHHHHHHHHhCCCCeEEecc--CCCCHHHHHHHHHHHHHcCCCEEEEeC--CCCCCCCHHHHHHHHHHHHHh
Confidence 33444444433356676653 45678888774 4567999888776 555555544455555555443
No 60
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=40.45 E-value=61 Score=32.05 Aligned_cols=54 Identities=22% Similarity=0.321 Sum_probs=32.8
Q ss_pred ccCCCCchh---HHHHHHHHHHHHHHH-hcCCCceeEeeeeccCC--CHHHHHHHHHHcCCCEEE
Q 019457 161 AIGGGSPLR---KITDEQAQALKTALE-AKNLPVNVYVGMRYWYP--FTEEAVQQIKRDRITRLV 219 (340)
Q Consensus 161 ~IGggSPL~---~~T~~Qa~~L~~~L~-~~g~~~~V~~aMrY~~P--~i~eal~~l~~~G~~~Iv 219 (340)
-+|||.|.. ..-++..+.|++.+. ..+.++.+. .+| ..++.++.|++.|+++|-
T Consensus 56 ~~GGGtPs~l~~~~l~~ll~~i~~~~~~~~~~eitie-----~np~~lt~e~l~~l~~~Gv~ris 115 (360)
T TIGR00539 56 FIGGGTPNTLSVEAFERLFESIYQHASLSDDCEITTE-----ANPELITAEWCKGLKGAGINRLS 115 (360)
T ss_pred EeCCCchhcCCHHHHHHHHHHHHHhCCCCCCCEEEEE-----eCCCCCCHHHHHHHHHcCCCEEE
Confidence 349999965 444455555555443 122222222 245 457899999999999773
No 61
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=38.95 E-value=1.5e+02 Score=30.48 Aligned_cols=120 Identities=14% Similarity=0.151 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEeeeec----cCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhh
Q 019457 171 ITDEQAQALKTALEAKNLPVNVYVGMRY----WYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFRED 246 (340)
Q Consensus 171 ~T~~Qa~~L~~~L~~~g~~~~V~~aMrY----~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~~~~~ 246 (340)
++++.+..+-+.--+.|+.+ |.-|+-| ++|++..+|.+-.+ +++.+-.-+|-+-.-.....-+.+++.+++.
T Consensus 31 id~~~~~~~i~~aie~GiNy-idTA~~Yh~g~sE~~lgkaL~~~~R---ekv~LaTKlp~~~~~~~edm~r~fneqLekl 106 (391)
T COG1453 31 IDEENANETIDYAIEHGINY-IDTAWPYHGGESEEFLGKALKDGYR---EKVKLATKLPSWPVKDREDMERIFNEQLEKL 106 (391)
T ss_pred ccHHHHHHHHHHHHHcCCce-EeecccccCCCchHHHHHHhhhccc---ceEEEEeecCCccccCHHHHHHHHHHHHHHh
Confidence 45555554443322345432 4556666 56666666655432 3444433355322222222233344555543
Q ss_pred ccCCCCCEEEecCCCCC----hHHHHHHHHHHHHHHhhcCCCCce-EEEEEecCCchhh
Q 019457 247 AYLSRLPVSIIRSWYQR----EGYVNSMADLIQKELGKFQKPEEV-MIFFSAHGVPVSY 300 (340)
Q Consensus 247 ~~~~~~~v~~I~~~~~~----p~yI~a~a~~I~~~L~~~~~~~~~-~LlFSaHglP~~~ 300 (340)
. +..++-|--| ..|-....--..+++++.....++ .+=||+||-+.-+
T Consensus 107 ~------~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eGkIr~~GFSfHgs~e~~ 159 (391)
T COG1453 107 G------TDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEGKIRNAGFSFHGSTEVF 159 (391)
T ss_pred C------CchhhhhhhccccHHHHHHHHccChHHHHHHHHhcCcEEEeeecCCCCHHHH
Confidence 2 2222222111 222222222234455443222333 3449999977544
No 62
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=38.33 E-value=1.8e+02 Score=27.96 Aligned_cols=52 Identities=17% Similarity=0.274 Sum_probs=32.7
Q ss_pred CCceeEeeeeccCCCHHHHHHHH---HHcCCCEEEEEecCCCccccchHHHHHHHHHHHH
Q 019457 188 LPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (340)
Q Consensus 188 ~~~~V~~aMrY~~P~i~eal~~l---~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~~~ 244 (340)
.+++|..+-- . .++++++.. .+.|++-++++| |.|...+-...++.+.+...
T Consensus 68 ~~~pvi~gv~--~-~t~~~i~~a~~a~~~Gad~v~~~p--P~y~~~~~~~i~~~f~~v~~ 122 (289)
T cd00951 68 GRVPVLAGAG--Y-GTATAIAYAQAAEKAGADGILLLP--PYLTEAPQEGLYAHVEAVCK 122 (289)
T ss_pred CCCCEEEecC--C-CHHHHHHHHHHHHHhCCCEEEECC--CCCCCCCHHHHHHHHHHHHh
Confidence 3577777753 3 788887744 457999888876 55655554444444444433
No 63
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=37.93 E-value=3.2e+02 Score=25.04 Aligned_cols=103 Identities=11% Similarity=0.150 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCCCEEEEEecCCC--ccc----cchHHHHHHHHHHHHhhccCC-CCCEEEecCCC--CChHHHHHHHHHH
Q 019457 204 EEAVQQIKRDRITRLVVLPLYPQ--FSI----STTGSSIRVLQNIFREDAYLS-RLPVSIIRSWY--QREGYVNSMADLI 274 (340)
Q Consensus 204 ~eal~~l~~~G~~~IvvlPLyPq--YS~----sTtgS~~~~l~~~~~~~~~~~-~~~v~~I~~~~--~~p~yI~a~a~~I 274 (340)
++.++.+.+.|++.+-+ ++... +.. .+....++.+.+.++...... .+.+.+..-+- .++.|+..+++.+
T Consensus 77 ~~~i~~a~~~g~~~i~i-~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~ 155 (265)
T cd03174 77 EKGIERALEAGVDEVRI-FDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKAL 155 (265)
T ss_pred hhhHHHHHhCCcCEEEE-EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHH
Confidence 77788888889876544 33222 110 111123444444433222111 12344445565 8889988777766
Q ss_pred HHHHhhcCCCCceEEEEEecCCchhhhccCCCchHHHHHHHHHHHHHHh
Q 019457 275 QKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRL 323 (340)
Q Consensus 275 ~~~L~~~~~~~~~~LlFSaHglP~~~ie~~GDpY~~q~~~T~~~Iae~L 323 (340)
.+. + .+. +- + .+..|-.+++++.+..+.+.+.+
T Consensus 156 ~~~----g-~~~--i~-----l----~Dt~G~~~P~~v~~li~~l~~~~ 188 (265)
T cd03174 156 EEA----G-ADE--IS-----L----KDTVGLATPEEVAELVKALREAL 188 (265)
T ss_pred HHc----C-CCE--EE-----e----chhcCCcCHHHHHHHHHHHHHhC
Confidence 543 1 121 11 1 12247889999999999998876
No 64
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=36.34 E-value=34 Score=28.52 Aligned_cols=25 Identities=36% Similarity=0.364 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhhccCCCCC-eEE
Q 019457 310 DQMEECIYLIMQRLKDRGINND-HTL 334 (340)
Q Consensus 310 ~q~~~T~~~Iae~L~~~gl~~~-~~l 334 (340)
-||.++|.+|++.|...|++.+ |+|
T Consensus 19 ~qC~~cA~Al~~~L~~~gI~Gk~i~l 44 (100)
T PF15643_consen 19 FQCVECASALKQFLKQAGIPGKIIRL 44 (100)
T ss_pred eehHHHHHHHHHHHHHCCCCceEEEE
Confidence 6899999999999998899754 554
No 65
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=35.52 E-value=2.4e+02 Score=24.21 Aligned_cols=65 Identities=23% Similarity=0.242 Sum_probs=43.6
Q ss_pred eeccCCCHHHHHHHHHHcCCCEEEE-EecCCCccccchHHHHHHHHHHHHhhccCCCCCEEEecCCCC
Q 019457 196 MRYWYPFTEEAVQQIKRDRITRLVV-LPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQ 262 (340)
Q Consensus 196 MrY~~P~i~eal~~l~~~G~~~Ivv-lPLyPqYS~sTtgS~~~~l~~~~~~~~~~~~~~v~~I~~~~~ 262 (340)
.......+++..+-+.+.+++.+|+ +|+...-+.+.....++.+.+.+.+.- +++++.+++..+.
T Consensus 33 ~~~~~~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~--~~ipV~~~DEr~T 98 (135)
T PF03652_consen 33 RRNREKDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRF--PGIPVILVDERLT 98 (135)
T ss_dssp ECCCCCCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH---TSEEEEEECSCS
T ss_pred CCCCchHHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhc--CCCcEEEECCChh
Confidence 4444677777766677788988776 999886666655555666666665532 4578999887775
No 66
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=34.73 E-value=4.6e+02 Score=25.87 Aligned_cols=55 Identities=31% Similarity=0.443 Sum_probs=31.3
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhcCCCceeEeeeeccCC--CHHHHHHHHHHcCCCEE
Q 019457 162 IGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYP--FTEEAVQQIKRDRITRL 218 (340)
Q Consensus 162 IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~aMrY~~P--~i~eal~~l~~~G~~~I 218 (340)
+|||.|..- ...+.+.|.+.+...+....+.+.+- .+| ..+|.++.|++.|++++
T Consensus 57 ~gGGtps~l-~~~~l~~L~~~i~~~~~~~~~eitie-~~p~~~t~e~l~~l~~~G~~rv 113 (374)
T PRK05799 57 IGGGTPTYL-SLEALEILKETIKKLNKKEDLEFTVE-GNPGTFTEEKLKILKSMGVNRL 113 (374)
T ss_pred ECCCcccCC-CHHHHHHHHHHHHhCCCCCCCEEEEE-eCCCcCCHHHHHHHHHcCCCEE
Confidence 589988752 22333344444433222222233332 345 56889999999999986
No 67
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=34.25 E-value=1.7e+02 Score=28.47 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=34.8
Q ss_pred HHHhcCCCceeEeeeeccCCCHHHHHHHH---HHcCCCEEEEEecCCCccccchHHHHHHHHHHHH
Q 019457 182 ALEAKNLPVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (340)
Q Consensus 182 ~L~~~g~~~~V~~aMrY~~P~i~eal~~l---~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~~~ 244 (340)
..+..+.+++|..|- +...++++++.. .+.|+|-++++| |.|-..|....++.+.+..+
T Consensus 70 ~~~~~~grvpvi~Gv--~~~~t~~ai~~a~~A~~~Gad~vlv~~--P~y~~~~~~~l~~yf~~va~ 131 (309)
T cd00952 70 VVETVAGRVPVFVGA--TTLNTRDTIARTRALLDLGADGTMLGR--PMWLPLDVDTAVQFYRDVAE 131 (309)
T ss_pred HHHHhCCCCCEEEEe--ccCCHHHHHHHHHHHHHhCCCEEEECC--CcCCCCCHHHHHHHHHHHHH
Confidence 344334457777653 455677777644 456999888877 44544455555555555444
No 68
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=33.88 E-value=1.3e+02 Score=27.94 Aligned_cols=118 Identities=20% Similarity=0.322 Sum_probs=73.7
Q ss_pred CCCCc-hhHHHHHHHHHHHHHHHhcCCCceeEeeeeccCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHH
Q 019457 163 GGGSP-LRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQN 241 (340)
Q Consensus 163 GggSP-L~~~T~~Qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~ 241 (340)
+|.+| -.+.|-++.++|+++ ++-|+.|+-+- +++++.++. ..-..+.++++.+....
T Consensus 28 ~~~dpH~~~~~p~d~~~l~~A------dlvv~~G~~~e-~~l~~~~~~---~~~~~~~~i~~~~~~~~------------ 85 (256)
T PF01297_consen 28 PGADPHDYEPTPSDIKKLQKA------DLVVYNGLGLE-PWLEKLLES---SQNPKVKVIDLSEGIDL------------ 85 (256)
T ss_dssp TTSCTTT----HHHHHHHHHS------SEEEES-TTTS-CCHHHHHHT---TTTTTTEEEETTTTS-G------------
T ss_pred CCCccccccCChHHHHHHHhC------CEEEEeCCccc-hhhhhhhhc---ccccccceEEeeccccc------------
Confidence 34555 445677788877643 67888886665 888888832 33445667777665411
Q ss_pred HHHhhccCCCCCEEEecCCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEEecCCchhhhccCCCchHHHHHHHHHHHHH
Q 019457 242 IFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQ 321 (340)
Q Consensus 242 ~~~~~~~~~~~~v~~I~~~~~~p~yI~a~a~~I~~~L~~~~~~~~~~LlFSaHglP~~~ie~~GDpY~~q~~~T~~~Iae 321 (340)
.... -=+++|-+|.....+++.|.+.|.+.. |+.. .+.+++-..|..++.+..+.+.+
T Consensus 86 --~~~~--------~npH~Wldp~~~~~~~~~Ia~~L~~~~-P~~~-----------~~y~~N~~~~~~~L~~l~~~~~~ 143 (256)
T PF01297_consen 86 --DHHG--------HNPHVWLDPENAKKMAEAIADALSELD-PANK-----------DYYEKNAEKYLKELDELDAEIKE 143 (256)
T ss_dssp --STTC--------BESTGGGSHHHHHHHHHHHHHHHHHHT-GGGH-----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccCC--------CCCchHHHHHHHHHHHHHHHHHHHHhC-ccch-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1000 134799999999999999999998752 2211 11223455688888888888888
Q ss_pred Hhh
Q 019457 322 RLK 324 (340)
Q Consensus 322 ~L~ 324 (340)
.+.
T Consensus 144 ~~~ 146 (256)
T PF01297_consen 144 KLA 146 (256)
T ss_dssp HHT
T ss_pred Hhh
Confidence 774
No 69
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=33.62 E-value=4.3e+02 Score=25.20 Aligned_cols=107 Identities=9% Similarity=0.014 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHcCCCEEEE-EecCCCccccchH----HHHHHHHHHHHhhccC-CCCCEEEecCCCCChHHHHHHHHH
Q 019457 200 YPFTEEAVQQIKRDRITRLVV-LPLYPQFSISTTG----SSIRVLQNIFREDAYL-SRLPVSIIRSWYQREGYVNSMADL 273 (340)
Q Consensus 200 ~P~i~eal~~l~~~G~~~Ivv-lPLyPqYS~sTtg----S~~~~l~~~~~~~~~~-~~~~v~~I~~~~~~p~yI~a~a~~ 273 (340)
.|..++ ++...+.|++.|.+ +|..+.+.....+ -+++.+.+..+..... -.+.+.....|..++.++..+++.
T Consensus 71 r~~~~d-i~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~ 149 (262)
T cd07948 71 RCHMDD-ARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRA 149 (262)
T ss_pred cCCHHH-HHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHH
Confidence 444554 55556679997655 5666654443333 3344444443322211 123456677888888888777666
Q ss_pred HHHHHhhcCCCCceEEEEEecCCchhhhccCCCchHHHHHHHHHHHHHHh
Q 019457 274 IQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRL 323 (340)
Q Consensus 274 I~~~L~~~~~~~~~~LlFSaHglP~~~ie~~GDpY~~q~~~T~~~Iae~L 323 (340)
+.+. + .+.+ .+.+.-|--++.++.+.++.|.+.+
T Consensus 150 ~~~~----g-~~~i-----------~l~Dt~G~~~P~~v~~~~~~~~~~~ 183 (262)
T cd07948 150 VDKL----G-VNRV-----------GIADTVGIATPRQVYELVRTLRGVV 183 (262)
T ss_pred HHHc----C-CCEE-----------EECCcCCCCCHHHHHHHHHHHHHhc
Confidence 6543 1 2221 1223457778999999999998875
No 70
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=33.33 E-value=4.4e+02 Score=25.23 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCCCceeEeeeeccCCC--------HHHHHHHHHHcCCCEEEEE
Q 019457 175 QAQALKTALEAKNLPVNVYVGMRYWYPF--------TEEAVQQIKRDRITRLVVL 221 (340)
Q Consensus 175 Qa~~L~~~L~~~g~~~~V~~aMrY~~P~--------i~eal~~l~~~G~~~Ivvl 221 (340)
++...-+...+.|..+.+.+.|.++.|+ +.+.++++.+.|+++|.+-
T Consensus 115 ~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~ 169 (274)
T cd07938 115 RFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDEISLG 169 (274)
T ss_pred HHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 3333334445567777777887776554 4466778888899976554
No 71
>PLN03194 putative disease resistance protein; Provisional
Probab=33.07 E-value=1.9e+02 Score=26.72 Aligned_cols=64 Identities=17% Similarity=0.193 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcCCCceeEe---eeeccCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHH
Q 019457 174 EQAQALKTALEAKNLPVNVYV---GMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (340)
Q Consensus 174 ~Qa~~L~~~L~~~g~~~~V~~---aMrY~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~~~ 244 (340)
..+.-|.++|...| +.|++ -|+-|.....+.++++.+ .++.++.+.|.|..++- +++++..+++
T Consensus 41 ~FvshL~~aL~~~G--I~vF~D~~el~~G~~i~~~L~~AIee---Sri~IvVfS~~Ya~S~W--CLdEL~~I~e 107 (187)
T PLN03194 41 TIATLLYDHLSRLN--LRPFLDNKNMKPGDKLFDKINSAIRN---CKVGVAVFSPRYCESYF--CLHELALIME 107 (187)
T ss_pred cHHHHHHHHHHHCC--CEEEEcCccccCCCcHHHHHHHHHHh---CeEEEEEECCCcccchh--HHHHHHHHHH
Confidence 35777788888877 44443 367788877888888765 57889999999986554 6788887765
No 72
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=32.83 E-value=3.8e+02 Score=29.08 Aligned_cols=49 Identities=18% Similarity=0.089 Sum_probs=31.8
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHhcCCCceeEeeeeccCCCHH--HHHHHHHH
Q 019457 161 AIGGGSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTE--EAVQQIKR 212 (340)
Q Consensus 161 ~IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~--eal~~l~~ 212 (340)
.++|.|||.+.-++||++|.+.|.... .+. .-.-|..|... ++.+-+.+
T Consensus 437 r~~Gd~pLt~~G~~qA~~l~~~l~~~~-~~~--~~~V~sSpl~Ra~~TA~~i~~ 487 (664)
T PTZ00322 437 RIGGNSRLTERGRAYSRALFEYFQKEI-STT--SFTVMSSCAKRCTETVHYFAE 487 (664)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHhcc-CCC--CcEEEcCCcHHHHHHHHHHHh
Confidence 356789999999999999999997531 111 11224677743 45555543
No 73
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=32.57 E-value=2.5e+02 Score=26.79 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=25.8
Q ss_pred CceeEeeeeccCCCHHHHHHHH---HHcCCCEEEEEecCCCccccchHHHHHHHHHH
Q 019457 189 PVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNI 242 (340)
Q Consensus 189 ~~~V~~aMrY~~P~i~eal~~l---~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~ 242 (340)
+++|..|- +...++++++.. ++.|++-++++| |.|...+-...++.+.+.
T Consensus 70 ~~~vi~gv--~~~~~~~~i~~a~~a~~~G~d~v~~~p--P~~~~~~~~~i~~~~~~i 122 (292)
T PRK03170 70 RVPVIAGT--GSNSTAEAIELTKFAEKAGADGALVVT--PYYNKPTQEGLYQHFKAI 122 (292)
T ss_pred CCcEEeec--CCchHHHHHHHHHHHHHcCCCEEEECC--CcCCCCCHHHHHHHHHHH
Confidence 35555442 344567776643 345777666655 445444444444444443
No 74
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=31.20 E-value=4.1e+02 Score=25.10 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=23.9
Q ss_pred CceeEeeeeccCCCHHHHHHHH---HHcCCCEEEEEecCCCccccchHHHHHHHHHH
Q 019457 189 PVNVYVGMRYWYPFTEEAVQQI---KRDRITRLVVLPLYPQFSISTTGSSIRVLQNI 242 (340)
Q Consensus 189 ~~~V~~aMrY~~P~i~eal~~l---~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~ 242 (340)
+++|..|- +.+.++++++.. ++.|++.++++| |.|-..|-...++.+.+.
T Consensus 69 ~~~vi~gv--~~~~~~~~~~~a~~a~~~G~d~v~~~~--P~~~~~~~~~l~~~~~~i 121 (284)
T cd00950 69 RVPVIAGT--GSNNTAEAIELTKRAEKAGADAALVVT--PYYNKPSQEGLYAHFKAI 121 (284)
T ss_pred CCcEEecc--CCccHHHHHHHHHHHHHcCCCEEEEcc--cccCCCCHHHHHHHHHHH
Confidence 34444442 345666666543 345777666554 444333333334433333
No 75
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=30.70 E-value=85 Score=30.94 Aligned_cols=13 Identities=38% Similarity=0.774 Sum_probs=6.2
Q ss_pred CEEEEEecCCCcc
Q 019457 216 TRLVVLPLYPQFS 228 (340)
Q Consensus 216 ~~IvvlPLyPqYS 228 (340)
++++.||++|.++
T Consensus 347 ~~~l~lP~~~~l~ 359 (375)
T PRK11706 347 ERLLRLPLFYNLT 359 (375)
T ss_pred hCcEeccCCCCCC
Confidence 3445555555444
No 76
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=30.60 E-value=81 Score=31.23 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=8.5
Q ss_pred ChHHHHHHHHHHHHHH
Q 019457 263 REGYVNSMADLIQKEL 278 (340)
Q Consensus 263 ~p~yI~a~a~~I~~~L 278 (340)
.+.-++.+++.|++.+
T Consensus 362 ~~~~~~~i~~~i~~~~ 377 (379)
T PRK11658 362 TDADVDRVITALQQIA 377 (379)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3444555566665543
No 77
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=30.51 E-value=2.9e+02 Score=26.67 Aligned_cols=87 Identities=11% Similarity=0.159 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCCCEEEEEecC--CC--------ccccchHHHHHHHHHHHHhhccCCCCCEEEecCC---CCChHHHHH
Q 019457 203 TEEAVQQIKRDRITRLVVLPLY--PQ--------FSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSW---YQREGYVNS 269 (340)
Q Consensus 203 i~eal~~l~~~G~~~IvvlPLy--Pq--------YS~sTtgS~~~~l~~~~~~~~~~~~~~v~~I~~~---~~~p~yI~a 269 (340)
++..|+++.+.|+. +.++|+. |. ....+.....+.+.-+.+.....+++-+.+-.++ ..+..+.++
T Consensus 90 ~d~~i~~a~~~Gi~-~~lv~~wg~~~~~~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~~~~~~~~~~w~~ 168 (289)
T PF13204_consen 90 LDRRIEKANELGIE-AALVPFWGCPYVPGTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDYFDTEKTRADWDA 168 (289)
T ss_dssp HHHHHHHHHHTT-E-EEEESS-HHHHH-------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS--TTSSHHHHHH
T ss_pred HHHHHHHHHHCCCe-EEEEEEECCccccccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCccCCCCcCHHHHHH
Confidence 56677788888876 3466666 32 0233333332222222333333333335555666 667788888
Q ss_pred HHHHHHHHHhhcCCCCceEEEEEecCCch
Q 019457 270 MADLIQKELGKFQKPEEVMIFFSAHGVPV 298 (340)
Q Consensus 270 ~a~~I~~~L~~~~~~~~~~LlFSaHglP~ 298 (340)
+++.|++. +|.. |.|+|.-+.
T Consensus 169 ~~~~i~~~-----dp~~---L~T~H~~~~ 189 (289)
T PF13204_consen 169 MARGIKEN-----DPYQ---LITIHPCGR 189 (289)
T ss_dssp HHHHHHHH-------SS----EEEEE-BT
T ss_pred HHHHHHhh-----CCCC---cEEEeCCCC
Confidence 88888765 2222 789998764
No 78
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=30.34 E-value=3.1e+02 Score=22.48 Aligned_cols=28 Identities=7% Similarity=0.124 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhhcc-CCC-CCeEEEEe
Q 019457 310 DQMEECIYLIMQRLKDR-GIN-NDHTLAYQ 337 (340)
Q Consensus 310 ~q~~~T~~~Iae~L~~~-gl~-~~~~layQ 337 (340)
+|.++.++.|.+.|.+. |++ +++.+.|+
T Consensus 72 e~k~~l~~~i~~~l~~~lgi~~~rv~I~f~ 101 (116)
T PTZ00397 72 SNNSSIAAAITKILASHLKVKSERVYIEFK 101 (116)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcccEEEEEE
Confidence 45555555555555322 775 45667665
No 79
>PLN00061 photosystem II protein Psb27; Provisional
Probab=30.12 E-value=1.4e+02 Score=26.67 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=40.5
Q ss_pred CcHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhccchhhHHhhcccCCCCchhHHHHHHHHHHHHHHH
Q 019457 114 HDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALE 184 (340)
Q Consensus 114 ~dV~~FL~~~l~D~~VI~lP~~~~~~~~~L~~lI~~~R~~ksa~~Y~~IGggSPL~~~T~~Qa~~L~~~L~ 184 (340)
+.|..|+.++..++.|-.+..+ --++.-|+.+ +.+|..-|...||-+-. -+.|.+.|.
T Consensus 90 e~IndYisryR~~~~V~gl~Sf-ttMqtALnsL---------AghYssyGpnrPLPe~l---K~Rll~EL~ 147 (150)
T PLN00061 90 ESIREYLGNWRGQKTVAEEESY-VELEKAIRSL---------ASFYSKAGPSAPLPEDV---KSEILDDLN 147 (150)
T ss_pred HHHHHHHHHhcCCccccccchH-HHHHHHHHHH---------HHHHHhcCCCCCCCHHH---HHHHHHHHh
Confidence 4799999999999998776542 3344445544 78999999889987433 344444443
No 80
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=29.97 E-value=1.2e+02 Score=27.24 Aligned_cols=13 Identities=8% Similarity=0.222 Sum_probs=7.6
Q ss_pred HHHHHHHHHcCCC
Q 019457 204 EEAVQQIKRDRIT 216 (340)
Q Consensus 204 ~eal~~l~~~G~~ 216 (340)
.+.++.+.+.|+-
T Consensus 70 ~~~~~~~~~~~ip 82 (270)
T cd01545 70 PELLDLLDEAGVP 82 (270)
T ss_pred cHHHHHHHhcCCC
Confidence 4556666666654
No 81
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=29.60 E-value=1.8e+02 Score=27.81 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEeeeeccCCCHHHHHHHHHHcCCCEEEEEe
Q 019457 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLP 222 (340)
Q Consensus 171 ~T~~Qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eal~~l~~~G~~~IvvlP 222 (340)
+.+.+++.+++.|.+.|.++.....+..........++++++.|.+-|++..
T Consensus 150 ~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~s~~i~~i~~~~~d~v~~~~ 201 (347)
T cd06335 150 WGRSNRKDLTAALAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIVG 201 (347)
T ss_pred hhhhHHHHHHHHHHHcCCeeEEEeeecCCCccHHHHHHHHHhCCCCEEEEEe
Confidence 5677888888888887755443344445677888999999999998666654
No 82
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=29.40 E-value=46 Score=30.38 Aligned_cols=87 Identities=16% Similarity=0.152 Sum_probs=52.6
Q ss_pred CCchhHHHHHHHHHHHHHHHhcCCCceeEeeeeccCCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHH
Q 019457 165 GSPLRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFR 244 (340)
Q Consensus 165 gSPL~~~T~~Qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~~~ 244 (340)
.+|-..|+...+.++.-.+-.. =+-|.-+.+|.+.+.|.++.. .+++|-+.|-++.-+...-+..+-+.++
T Consensus 18 srpg~~~~~~~aR~l~~~~iNL-----GfsG~~~le~~~a~~ia~~~a----~~~~ld~~~N~~~~~~~~~~~~fv~~iR 88 (178)
T PF14606_consen 18 SRPGMAYPAILARRLGLDVINL-----GFSGNGKLEPEVADLIAEIDA----DLIVLDCGPNMSPEEFRERLDGFVKTIR 88 (178)
T ss_dssp SSGGGSHHHHHHHHHT-EEEEE-----E-TCCCS--HHHHHHHHHS------SEEEEEESHHCCTTTHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHcCCCeEee-----eecCccccCHHHHHHHhcCCC----CEEEEEeecCCCHHHHHHHHHHHHHHHH
Confidence 3699999988877763221111 134567888999999888842 5888888888777776666666666666
Q ss_pred hhccCCCCCEEEecCCCC
Q 019457 245 EDAYLSRLPVSIIRSWYQ 262 (340)
Q Consensus 245 ~~~~~~~~~v~~I~~~~~ 262 (340)
+.. |+.|+-+|.+.+.
T Consensus 89 ~~h--P~tPIllv~~~~~ 104 (178)
T PF14606_consen 89 EAH--PDTPILLVSPIPY 104 (178)
T ss_dssp TT---SSS-EEEEE----
T ss_pred HhC--CCCCEEEEecCCc
Confidence 543 5667888874443
No 83
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=29.17 E-value=53 Score=25.77 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEec
Q 019457 200 YPFTEEAVQQIKRDRITRLVVLPL 223 (340)
Q Consensus 200 ~P~i~eal~~l~~~G~~~IvvlPL 223 (340)
.--+.+++.+|++.|.+.|+++|+
T Consensus 49 ~~~~~~~~~~Lk~~GA~~Ilv~pi 72 (75)
T PF08029_consen 49 EKQVWDLMDKLKAAGASDILVLPI 72 (75)
T ss_dssp CCCHHHHHHHHHCTT-EEEEEEE-
T ss_pred HHHHHHHHHHHHHcCCCEEEEEec
Confidence 566889999999999999999997
No 84
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=29.14 E-value=1.9e+02 Score=27.46 Aligned_cols=59 Identities=15% Similarity=0.252 Sum_probs=33.1
Q ss_pred cCCCHHHH---HHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhhccCCCCCEEEecCCCCChH
Q 019457 199 WYPFTEEA---VQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREG 265 (340)
Q Consensus 199 ~~P~i~ea---l~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~~~~~~~~~~~~v~~I~~~~~~p~ 265 (340)
+.|...+. .+++..+|+++|+++++....|.| . .....+.+.+ ++.++++|++...-.+
T Consensus 61 S~ps~~~~~~~f~~~~~~gyd~ii~i~iSs~LSgt-y-~~a~~aa~~~------~~~~i~ViDS~~~s~g 122 (280)
T PF02645_consen 61 SQPSPGEFEEAFEKLLEEGYDEIIVITISSGLSGT-Y-NSARLAAKML------PDIKIHVIDSKSVSAG 122 (280)
T ss_dssp E---HHHHHHHHHHHHHTTTSEEEEEES-TTT-TH-H-HHHHHHHHHH------TTTEEEEEE-SS-HHH
T ss_pred cCCCHHHHHHHHHHHHHCCCCeEEEEeCCcchhhH-H-HHHHHHHhhc------CcCEEEEEeCCCcchh
Confidence 68888765 456666899999999997776532 1 1122222222 3457999999876544
No 85
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=28.80 E-value=99 Score=32.86 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCCCceeEeeeeccCCCHHHHHHHHHHcCCCEEEEEecC
Q 019457 177 QALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLY 224 (340)
Q Consensus 177 ~~L~~~L~~~g~~~~V~~aMrY~~P~i~eal~~l~~~G~~~IvvlPLy 224 (340)
+.+.+.+.+.|.++.|. |=.=.+|+++|.++.+.+-+.++|++||==
T Consensus 324 ~g~~~~f~~~Ga~~vi~-ggqt~nPS~~dll~ai~~~~a~~V~iLPNn 370 (530)
T TIGR03599 324 EGIAELFKSLGADVVIE-GGQTMNPSTEDILKAIEKVNAKNVFVLPNN 370 (530)
T ss_pred chHHHHHHHCCCCEEEe-CCCCCCCCHHHHHHHHHhCCCCeEEEecCC
Confidence 44666777777665554 323448999999999999999999999964
No 86
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=27.84 E-value=1.3e+02 Score=26.40 Aligned_cols=16 Identities=13% Similarity=0.131 Sum_probs=10.3
Q ss_pred HHHHHHcCCCEEEEEe
Q 019457 207 VQQIKRDRITRLVVLP 222 (340)
Q Consensus 207 l~~l~~~G~~~IvvlP 222 (340)
++.+.+.|+--|.+-.
T Consensus 71 ~~~~~~~~ipvv~~~~ 86 (264)
T cd06267 71 LEELAALGIPVVLVDR 86 (264)
T ss_pred HHHHHHcCCCEEEecc
Confidence 7777777777444433
No 87
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=27.68 E-value=3.7e+02 Score=22.55 Aligned_cols=21 Identities=24% Similarity=0.242 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhcCCCce
Q 019457 171 ITDEQAQALKTALEAKNLPVN 191 (340)
Q Consensus 171 ~T~~Qa~~L~~~L~~~g~~~~ 191 (340)
.|++.|++|++.|...|.++.
T Consensus 13 nTe~iA~~ia~~l~~~g~~v~ 33 (140)
T TIGR01754 13 NTEEVAFMIQDYLQKDGHEVD 33 (140)
T ss_pred hHHHHHHHHHHHHhhCCeeEE
Confidence 799999999999987665443
No 88
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=27.55 E-value=1.1e+02 Score=25.67 Aligned_cols=30 Identities=33% Similarity=0.349 Sum_probs=23.5
Q ss_pred CCc-hhHHHHHHHHHHHHHHHhcCCCceeEe
Q 019457 165 GSP-LRKITDEQAQALKTALEAKNLPVNVYV 194 (340)
Q Consensus 165 gSP-L~~~T~~Qa~~L~~~L~~~g~~~~V~~ 194 (340)
||| -...|+..++.+.+.|.+.|.++++.-
T Consensus 8 gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~ 38 (152)
T PF03358_consen 8 GSPRKNSNTRKLAEAVAEQLEEAGAEVEVID 38 (152)
T ss_dssp SSSSTTSHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CcCCCCCHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 466 778999999999999988765555553
No 89
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=27.45 E-value=1.5e+02 Score=28.34 Aligned_cols=107 Identities=23% Similarity=0.317 Sum_probs=56.0
Q ss_pred eEEEEEccCCCCCcCcHHHHHHhhc-CCCCcccCChhhhhhhhHHH--HHHHhccchhhHHhhcccCCCCchhHHHHHHH
Q 019457 100 VGVLLLNLGGPDTLHDVQPFLFNLF-ADPDIIRLPRLFRFLQWPLA--KLISVVRAPKSKEGYAAIGGGSPLRKITDEQA 176 (340)
Q Consensus 100 ~aVLLlNlG~P~s~~dV~~FL~~~l-~D~~VI~lP~~~~~~~~~L~--~lI~~~R~~ksa~~Y~~IGggSPL~~~T~~Qa 176 (340)
.=|.-+..|-|+-.. -.+++..+- .+=++|++.-+| ..|++ ..|.. ...+.+.+|--+. ..-++.
T Consensus 13 ~li~yi~aG~P~~~~-~~~~~~~l~~~Gad~iElGiPf---SDP~aDGpvIq~-------a~~~AL~~G~~~~-~~~~~~ 80 (258)
T PRK13111 13 ALIPYITAGDPDLET-SLEIIKALVEAGADIIELGIPF---SDPVADGPVIQA-------ASLRALAAGVTLA-DVFELV 80 (258)
T ss_pred cEEEEEeCCCCCHHH-HHHHHHHHHHCCCCEEEECCCC---CCCcccCHHHHH-------HHHHHHHcCCCHH-HHHHHH
Confidence 345566677776321 122333321 344666653221 22443 34443 2445553332222 222333
Q ss_pred HHHHHHHHhcCCCceeEeeeeccCC----CHHHHHHHHHHcCCCEEEEEec
Q 019457 177 QALKTALEAKNLPVNVYVGMRYWYP----FTEEAVQQIKRDRITRLVVLPL 223 (340)
Q Consensus 177 ~~L~~~L~~~g~~~~V~~aMrY~~P----~i~eal~~l~~~G~~~IvvlPL 223 (340)
++++ +...+.++ +.|.|++| .+++-++++++.|++-+++--|
T Consensus 81 ~~~r----~~~~~~p~-vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDL 126 (258)
T PRK13111 81 REIR----EKDPTIPI-VLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDL 126 (258)
T ss_pred HHHH----hcCCCCCE-EEEecccHHhhcCHHHHHHHHHHcCCcEEEECCC
Confidence 3333 22335565 48999999 5567899999999998888444
No 90
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=27.41 E-value=1.5e+02 Score=28.94 Aligned_cols=37 Identities=14% Similarity=0.344 Sum_probs=26.4
Q ss_pred ceEEEEEecCCchhhhc---cCC-------CchHHHHHHHHHHHHHH
Q 019457 286 EVMIFFSAHGVPVSYVE---KAG-------DPYRDQMEECIYLIMQR 322 (340)
Q Consensus 286 ~~~LlFSaHglP~~~ie---~~G-------DpY~~q~~~T~~~Iae~ 322 (340)
+..+||+|||+|....+ ++| -||...++..++...++
T Consensus 69 ~~~ViirAHGv~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~~~~~~ 115 (281)
T PRK12360 69 GDVVIIRSHGVSKKVYKDLKDKGLEIIDATCPFVKKIQNIVEEYYNK 115 (281)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCeEEeCCCccchHHHHHHHHHHhC
Confidence 34799999999987642 234 37888888877766654
No 91
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=26.66 E-value=1.5e+02 Score=28.15 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=27.5
Q ss_pred CceeEeeeeccCC----CHHHHHHHHHHcCCCEEEEEec
Q 019457 189 PVNVYVGMRYWYP----FTEEAVQQIKRDRITRLVVLPL 223 (340)
Q Consensus 189 ~~~V~~aMrY~~P----~i~eal~~l~~~G~~~IvvlPL 223 (340)
+.++. .|-|++| -+++-++++++.|++.+++--|
T Consensus 87 ~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDl 124 (256)
T TIGR00262 87 NIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADL 124 (256)
T ss_pred CCCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEECCC
Confidence 56665 9999999 5567788999999998777666
No 92
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=26.57 E-value=1.6e+02 Score=26.56 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=26.7
Q ss_pred EEEEEecCCCccccchHHHHHHHHHHHHhhccCCCCC--EEEecCCCCChHHHHHH
Q 019457 217 RLVVLPLYPQFSISTTGSSIRVLQNIFREDAYLSRLP--VSIIRSWYQREGYVNSM 270 (340)
Q Consensus 217 ~IvvlPLyPqYS~sTtgS~~~~l~~~~~~~~~~~~~~--v~~I~~~~~~p~yI~a~ 270 (340)
|+|++.|..||+.+-. +...+ +... ..+++. +.-...|.++|.=.+.+
T Consensus 2 r~V~vtld~~~~~al~----~aa~~-l~~~-~~p~l~l~~~~~~el~~~~~~~~~~ 51 (164)
T PF11965_consen 2 RFVIVTLDEHYNSALY----RAAAR-LNRD-HCPGLELSVFAAAELERDPEALEEC 51 (164)
T ss_pred EEEEEeCchhhhHHHH----HHHHH-Hhhc-cCCCeEEEEEeHHHhhcChHHHHHH
Confidence 6899999999964322 22333 3222 124444 44566787887433333
No 93
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=26.54 E-value=60 Score=21.19 Aligned_cols=23 Identities=9% Similarity=0.319 Sum_probs=17.2
Q ss_pred eccCCCHHHHHHHHHHcCCCEEE
Q 019457 197 RYWYPFTEEAVQQIKRDRITRLV 219 (340)
Q Consensus 197 rY~~P~i~eal~~l~~~G~~~Iv 219 (340)
+||.|--++..+++.+.|+|.|.
T Consensus 3 ~~WT~d~~~~~~~~l~~GVDgI~ 25 (30)
T PF13653_consen 3 YFWTPDKPASWRELLDLGVDGIM 25 (30)
T ss_dssp EEET--SHHHHHHHHHHT-SEEE
T ss_pred EEecCCCHHHHHHHHHcCCCEee
Confidence 56888889999999999999875
No 94
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=26.51 E-value=3.8e+02 Score=26.13 Aligned_cols=52 Identities=13% Similarity=0.154 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCceeEeeeeccCCCH-HHHHHHHHHcCCCEEEEEec
Q 019457 170 KITDEQAQALKTALEAKNLPVNVYVGMRYWYPFT-EEAVQQIKRDRITRLVVLPL 223 (340)
Q Consensus 170 ~~T~~Qa~~L~~~L~~~g~~~~V~~aMrY~~P~i-~eal~~l~~~G~~~IvvlPL 223 (340)
.+.-+..+.+++.+.+.| +.+.+++....|-- ++.++.+.+.++|-||++|.
T Consensus 71 ~~~~~i~~gi~~~~~~~g--y~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~~ 123 (333)
T COG1609 71 PFFAEILKGIEEAAREAG--YSLLLANTDDDPEKEREYLETLLQKRVDGLILLGE 123 (333)
T ss_pred chHHHHHHHHHHHHHHcC--CEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 466678888888888775 67777766665554 45678888999999999993
No 95
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=26.39 E-value=4.1e+02 Score=25.27 Aligned_cols=38 Identities=13% Similarity=0.044 Sum_probs=23.0
Q ss_pred HHhcCCCceeEeee------eccCCCHHHHHHHHHHcCCCEEEEEe
Q 019457 183 LEAKNLPVNVYVGM------RYWYPFTEEAVQQIKRDRITRLVVLP 222 (340)
Q Consensus 183 L~~~g~~~~V~~aM------rY~~P~i~eal~~l~~~G~~~IvvlP 222 (340)
..+.|..+.+. +| +...-++.+.++++.+.|+++|. |+
T Consensus 128 ak~~G~~v~~~-~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~-l~ 171 (273)
T cd07941 128 LKSHGREVIFD-AEHFFDGYKANPEYALATLKAAAEAGADWLV-LC 171 (273)
T ss_pred HHHcCCeEEEe-EEeccccCCCCHHHHHHHHHHHHhCCCCEEE-Ee
Confidence 34456444443 55 33344556777888889999765 44
No 96
>TIGR02017 hutG_amidohyd N-formylglutamate amidohydrolase. In some species, histidine is converted to via urocanate and then formimino-L-glutamate to glutamate in four steps, where the fourth step is conversion of N-formimino-L-glutamate to L-glutamate and formamide. In others, that pathway from formimino-L-glutamate may differ, with the next enzyme being formiminoglutamate hydrolase (HutF) yielding N-formyl-L-glutamate. This model represents the enzyme N-formylglutamate deformylase, also called N-formylglutamate amidohydrolase, which then produces glutamate.
Probab=26.15 E-value=91 Score=29.93 Aligned_cols=30 Identities=13% Similarity=0.309 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEEEEEecCCch
Q 019457 265 GYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPV 298 (340)
Q Consensus 265 ~yI~a~a~~I~~~L~~~~~~~~~~LlFSaHglP~ 298 (340)
-|.+++++.|.+..++++ ..+++..||+|-
T Consensus 122 PYH~al~~~L~~~~~~~g----~~~liD~HSm~s 151 (263)
T TIGR02017 122 PYHAALQAEIERLRAQHG----YAVLYDAHSIRS 151 (263)
T ss_pred HHHHHHHHHHHHHHHhCC----CEEEEEeccCCc
Confidence 488999999888877764 369999999885
No 97
>COG3636 Predicted transcriptional regulator [Transcription]
Probab=26.12 E-value=1.6e+02 Score=24.52 Aligned_cols=73 Identities=16% Similarity=0.213 Sum_probs=42.3
Q ss_pred CcCcHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhccchhhHHhhcccCCCCchhHHHHHHHHHHHHHHHhcCCCce
Q 019457 112 TLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNLPVN 191 (340)
Q Consensus 112 s~~dV~~FL~~~l~D~~VI~lP~~~~~~~~~L~~lI~~~R~~ksa~~Y~~IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~ 191 (340)
++++|..||.+.|-|.+ |.++ . -+-+.|+..| |=|-+-+-+--=-+.|=+.|...
T Consensus 19 ~ee~ia~yL~~~le~~d----~a~i---~-~alg~var~~------------GMsqvA~~aGlsRe~LYkaLS~~----- 73 (100)
T COG3636 19 DEEAIAAYLNAALEEGD----PALI---A-AALGVVARSR------------GMSQVARKAGLSREGLYKALSPG----- 73 (100)
T ss_pred CHHHHHHHHHHHHHcCC----HHHH---H-HHHHHHHHhc------------CHHHHHHHhCccHHHHHHHhCCC-----
Confidence 56799999999999876 5432 1 1335666554 21222221111223344445432
Q ss_pred eEeeeeccCCCHHHHHHHHHHcCCC
Q 019457 192 VYVGMRYWYPFTEEAVQQIKRDRIT 216 (340)
Q Consensus 192 V~~aMrY~~P~i~eal~~l~~~G~~ 216 (340)
++|.+..+++=++.-|++
T Consensus 74 -------GNPtf~Til~V~kAlG~r 91 (100)
T COG3636 74 -------GNPTFDTILAVLKALGLR 91 (100)
T ss_pred -------CCCcHHHHHHHHHHcCce
Confidence 578888888777777764
No 98
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=26.06 E-value=5.4e+02 Score=23.98 Aligned_cols=50 Identities=14% Similarity=0.029 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEeeeeccCCCHHHHHHHHHHcCCCEEEE
Q 019457 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVV 220 (340)
Q Consensus 171 ~T~~Qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eal~~l~~~G~~~Ivv 220 (340)
+.++..+.+++.|.+.|.++.-..............+.++++.+.|-|++
T Consensus 146 ~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~~~~~~pd~v~~ 195 (336)
T cd06360 146 FGYEVVEGFKEAFTEAGGKIVKELWVPFGTSDFASYLAQIPDDVPDAVFV 195 (336)
T ss_pred hhHHHHHHHHHHHHHcCCEEEEEEecCCCCcchHHHHHHHHhcCCCEEEE
Confidence 66777788888888777544322223334677788999999999987664
No 99
>PF07799 DUF1643: Protein of unknown function (DUF1643); InterPro: IPR012441 This entry is represented by Bacteriophage D3, Orf41.6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are all sequences found within hypothetical proteins expressed by various bacteria, archaea and phage. The region concerned is approximately 150 residues long.
Probab=25.88 E-value=4e+02 Score=22.38 Aligned_cols=59 Identities=14% Similarity=0.270 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEecCCCccccchHHH----------HHHHHHHHHhhccCCCCCEEEecCCCCChH
Q 019457 200 YPFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSS----------IRVLQNIFREDAYLSRLPVSIIRSWYQREG 265 (340)
Q Consensus 200 ~P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~----------~~~l~~~~~~~~~~~~~~v~~I~~~~~~p~ 265 (340)
.|.+.-+++-+...|++.++++-|||+++.....-. .+.+.+.+++ .-.+|-.|.++..
T Consensus 31 D~T~~~~~~~a~~~gyg~~~i~NLf~~~~t~p~~l~~~~~~~~~~N~~~i~~~~~~-------~~~vv~AWG~~~~ 99 (136)
T PF07799_consen 31 DPTIRRCINFARRWGYGGVIIVNLFPQRSTDPKDLKKAPDPIGPENDEHIREALKE-------ADDVVLAWGNHGK 99 (136)
T ss_pred CHHHHHHHHHHhhcCCCeEEEEEecccccCCHHHHHhccCcccHhHHHHHHHHHhc-------cCcEEEEeCCCcc
Confidence 344555555566779999999999999985333211 1223333332 1457888888666
No 100
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=25.78 E-value=61 Score=31.83 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=7.3
Q ss_pred HHHHHHHHHHcCCC
Q 019457 203 TEEAVQQIKRDRIT 216 (340)
Q Consensus 203 i~eal~~l~~~G~~ 216 (340)
-++.++.|.+.|+.
T Consensus 309 r~~l~~~L~~~gI~ 322 (380)
T TIGR03588 309 RKEVFEALRAAGIG 322 (380)
T ss_pred HHHHHHHHHHCCCC
Confidence 34455555555553
No 101
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=25.73 E-value=2.5e+02 Score=27.01 Aligned_cols=61 Identities=25% Similarity=0.373 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEeeeec---cCCCHHH-HHHHHHHcCCCEEEEEec---CCCccccchHH
Q 019457 171 ITDEQAQALKTALEAKNLPVNVYVGMRY---WYPFTEE-AVQQIKRDRITRLVVLPL---YPQFSISTTGS 234 (340)
Q Consensus 171 ~T~~Qa~~L~~~L~~~g~~~~V~~aMrY---~~P~i~e-al~~l~~~G~~~IvvlPL---yPqYS~sTtgS 234 (340)
-|.--|.+|+..|+..+.+..|.-+..+ .+|++.+ +++.|.+ .+|+++-- -|.||.-|++.
T Consensus 79 aTvmNal~L~~aL~~~~~~~~v~sai~~~~~~e~~~~~~A~~~l~~---grVvIf~gGtg~P~fTTDt~AA 146 (238)
T COG0528 79 ATVMNALALQDALERLGVDTRVQSAIAMPQVAEPYSRREAIRHLEK---GRVVIFGGGTGNPGFTTDTAAA 146 (238)
T ss_pred HHHHHHHHHHHHHHhcCCcceecccccCccccCccCHHHHHHHHHc---CCEEEEeCCCCCCCCchHHHHH
Confidence 3555577889999888888888877666 6888855 6666643 46777775 89887666654
No 102
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=25.30 E-value=2.8e+02 Score=23.52 Aligned_cols=53 Identities=21% Similarity=0.301 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhcCCCceeEeeeeccCC-----CHHHHHHHHHHcCCCEEEEEecCCCc
Q 019457 173 DEQAQALKTALEAKNLPVNVYVGMRYWYP-----FTEEAVQQIKRDRITRLVVLPLYPQF 227 (340)
Q Consensus 173 ~~Qa~~L~~~L~~~g~~~~V~~aMrY~~P-----~i~eal~~l~~~G~~~IvvlPLyPqY 227 (340)
++..++++. +.+.|. +.|...+-.+-| .+++.++.+.+.|++++.+.|+.|..
T Consensus 136 ~~~~~~i~~-~~~~g~-~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 193 (216)
T smart00729 136 EDVLEAVEK-LREAGP-IKVSTDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRP 193 (216)
T ss_pred HHHHHHHHH-HHHhCC-cceEEeEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeCC
Confidence 344444443 334452 445555555555 34445666677899999999998874
No 103
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=25.22 E-value=2.1e+02 Score=28.25 Aligned_cols=37 Identities=24% Similarity=0.422 Sum_probs=26.4
Q ss_pred ceEEEEEecCCchhhhc---cCC-------CchHHHHHHHHHHHHHH
Q 019457 286 EVMIFFSAHGVPVSYVE---KAG-------DPYRDQMEECIYLIMQR 322 (340)
Q Consensus 286 ~~~LlFSaHglP~~~ie---~~G-------DpY~~q~~~T~~~Iae~ 322 (340)
+..+||+|||+|....+ ++| -||...++..++...++
T Consensus 66 ~~~ViirAHGv~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~~~~~~ 112 (298)
T PRK01045 66 GAIVIFSAHGVSPAVREEAKERGLTVIDATCPLVTKVHKEVARMSRE 112 (298)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCeEEeCCCccchHHHHHHHHHHhC
Confidence 34799999999987642 234 37888888877766553
No 104
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=25.02 E-value=2.4e+02 Score=26.50 Aligned_cols=55 Identities=22% Similarity=0.078 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEeeeeccCCCHHHHHHHHHHcCCCEEEEEecCCC
Q 019457 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQ 226 (340)
Q Consensus 171 ~T~~Qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eal~~l~~~G~~~IvvlPLyPq 226 (340)
+.+..++.+++.+.+.|..+.-...+..........+.++++.+.|-| ++.+++.
T Consensus 149 ~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v-~~~~~~~ 203 (312)
T cd06346 149 YGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPDAL-VVIGYPE 203 (312)
T ss_pred hhhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEE-EEecccc
Confidence 667778888888888775544444455566778889999999998854 5556665
No 105
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=24.86 E-value=5.9e+02 Score=24.62 Aligned_cols=38 Identities=11% Similarity=0.076 Sum_probs=26.9
Q ss_pred HhcCCCceeEeeeeccCC--------CHHHHHHHHHHcCCCEEEEE
Q 019457 184 EAKNLPVNVYVGMRYWYP--------FTEEAVQQIKRDRITRLVVL 221 (340)
Q Consensus 184 ~~~g~~~~V~~aMrY~~P--------~i~eal~~l~~~G~~~Ivvl 221 (340)
.+.|..+.+++.|-++.| ++.+.++++.+.|+++|.+-
T Consensus 130 k~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~ 175 (287)
T PRK05692 130 KQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEISLG 175 (287)
T ss_pred HHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 345666777777777665 45677888889999976553
No 106
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=24.81 E-value=2.6e+02 Score=26.71 Aligned_cols=57 Identities=19% Similarity=0.179 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCceeEeeeeccCCCHHHHHHHHHHcCCCEEEEEecCC
Q 019457 168 LRKITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYP 225 (340)
Q Consensus 168 L~~~T~~Qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eal~~l~~~G~~~IvvlPLyP 225 (340)
-..+.+..++.+++.+.+.|.++.....+..........+.++++.+++- |++.+++
T Consensus 153 ~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~i~~~~~d~-v~~~~~~ 209 (362)
T cd06343 153 NDDFGKDYLKGLKDGLGDAGLEIVAETSYEVTEPDFDSQVAKLKAAGADV-VVLATTP 209 (362)
T ss_pred ccHHHHHHHHHHHHHHHHcCCeEEEEeeecCCCccHHHHHHHHHhcCCCE-EEEEcCc
Confidence 34567788889999998877655544555556667888899999999984 4455555
No 107
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=24.78 E-value=5.7e+02 Score=24.27 Aligned_cols=54 Identities=15% Similarity=-0.018 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHh--cCCCceeEeeeeccC-CCHHHHHHHHHHcCCCEEEEEe
Q 019457 169 RKITDEQAQALKTALEA--KNLPVNVYVGMRYWY-PFTEEAVQQIKRDRITRLVVLP 222 (340)
Q Consensus 169 ~~~T~~Qa~~L~~~L~~--~g~~~~V~~aMrY~~-P~i~eal~~l~~~G~~~IvvlP 222 (340)
..+.+...+.+++.|.+ .|.++.-...+.... +.....+.+|++.++|-|++..
T Consensus 153 ~~~g~~~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~ 209 (342)
T cd06329 153 YSWGQDVAAAFKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKASGADTVITGN 209 (342)
T ss_pred hHHHHHHHHHHHHHHHhhcCCcEEeceeccCCCCCCchHHHHHHHHHcCCCEEEEcc
Confidence 35777888889989987 554333233334445 6777889999999998555533
No 108
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=24.69 E-value=1.7e+02 Score=26.04 Aligned_cols=11 Identities=27% Similarity=0.353 Sum_probs=5.4
Q ss_pred HHHHHHHHcCC
Q 019457 205 EAVQQIKRDRI 215 (340)
Q Consensus 205 eal~~l~~~G~ 215 (340)
+.++.+.+.|+
T Consensus 69 ~~~~~~~~~~i 79 (259)
T cd01542 69 EHREAIKKLNV 79 (259)
T ss_pred HHHHHHhcCCC
Confidence 44455555454
No 109
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=24.56 E-value=1.7e+02 Score=26.16 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=9.2
Q ss_pred HHHHHHHHcCCCEEEEEec
Q 019457 205 EAVQQIKRDRITRLVVLPL 223 (340)
Q Consensus 205 eal~~l~~~G~~~IvvlPL 223 (340)
+.++.+...+++-+|+.|.
T Consensus 46 ~~i~~l~~~~vdgiii~~~ 64 (260)
T cd06286 46 EYLELLKTKQVDGLILCSR 64 (260)
T ss_pred HHHHHHHHcCCCEEEEeCC
Confidence 3444444555555555443
No 110
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=24.53 E-value=2e+02 Score=20.74 Aligned_cols=47 Identities=26% Similarity=0.211 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhcCCC------------ceeEeeeeccCCCHHHHHHHHH-HcCCCEEE
Q 019457 173 DEQAQALKTALEAKNLP------------VNVYVGMRYWYPFTEEAVQQIK-RDRITRLV 219 (340)
Q Consensus 173 ~~Qa~~L~~~L~~~g~~------------~~V~~aMrY~~P~i~eal~~l~-~~G~~~Iv 219 (340)
++.|+++.+.|...|.+ +.|.+|-.-..--.++++++|+ ..|.+-.|
T Consensus 15 ~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~~~~~~~~~v 74 (76)
T PF05036_consen 15 EENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLKKAAGPDAFV 74 (76)
T ss_dssp HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHHHHHTS--EE
T ss_pred HHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHhHhhCCCCEE
Confidence 44555555555544422 3555554444444555666666 55665544
No 111
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=24.47 E-value=4.5e+02 Score=22.48 Aligned_cols=71 Identities=21% Similarity=0.265 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhcCCCceeEeeeeccCC-----------------CHHHHHHHHHHcCCCEEEEEec-CCCccccchHH
Q 019457 173 DEQAQALKTALEAKNLPVNVYVGMRYWYP-----------------FTEEAVQQIKRDRITRLVVLPL-YPQFSISTTGS 234 (340)
Q Consensus 173 ~~Qa~~L~~~L~~~g~~~~V~~aMrY~~P-----------------~i~eal~~l~~~G~~~IvvlPL-yPqYS~sTtgS 234 (340)
..-++++++.+++.|..+.....+.++.. .+.++++..+.-|++.+++-+- ++.....+...
T Consensus 26 ~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~ 105 (213)
T PF01261_consen 26 DDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEE 105 (213)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHH
T ss_pred hHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHH
Confidence 35567778888888766444434333333 2344555556669887655533 24555555555
Q ss_pred HHHHHHHHH
Q 019457 235 SIRVLQNIF 243 (340)
Q Consensus 235 ~~~~l~~~~ 243 (340)
..+.+.+.+
T Consensus 106 ~~~~~~~~l 114 (213)
T PF01261_consen 106 NWERLAENL 114 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 554444443
No 112
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=24.27 E-value=1.3e+02 Score=27.86 Aligned_cols=49 Identities=18% Similarity=0.301 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEeeeeccC-------C------------CHHHHHHHHHHcCCCEEEEEec
Q 019457 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWY-------P------------FTEEAVQQIKRDRITRLVVLPL 223 (340)
Q Consensus 171 ~T~~Qa~~L~~~L~~~g~~~~V~~aMrY~~-------P------------~i~eal~~l~~~G~~~IvvlPL 223 (340)
+.+..|+++.+.+.+ ..|...+.|+. | .+.|+++.|.+.|++++|++.=
T Consensus 41 ia~~~a~~~a~~~~~----~lv~P~i~yG~s~~h~~fpGTisl~~~t~~~~l~di~~sl~~~Gf~~ivivng 108 (237)
T PF02633_consen 41 IAEAVAERAAERLGE----ALVLPPIPYGCSPHHMGFPGTISLSPETLIALLRDILRSLARHGFRRIVIVNG 108 (237)
T ss_dssp HHHHHHHHHHHHHTH----EEE---B--BB-GCCTTSTT-BBB-HHHHHHHHHHHHHHHHHHT--EEEEEES
T ss_pred HHHHHHHHHHHHCCc----EEEeCCCccccCcccCCCCCeEEeCHHHHHHHHHHHHHHHHHcCCCEEEEEEC
Confidence 344566666666642 44444444443 3 4567777788889998888864
No 113
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.00 E-value=7.4e+02 Score=24.80 Aligned_cols=147 Identities=18% Similarity=0.250 Sum_probs=75.4
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhcCCC---ceeEeeeeccCCCHHHHHHHHHHcCCCEEEEEec-----------CCCc
Q 019457 162 IGGGSPLRKITDEQAQALKTALEAKNLP---VNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPL-----------YPQF 227 (340)
Q Consensus 162 IGggSPL~~~T~~Qa~~L~~~L~~~g~~---~~V~~aMrY~~P~i~eal~~l~~~G~~~IvvlPL-----------yPqY 227 (340)
.|+|=||..+ +...+.++..-+..|.. -.+.+- ..+ +.+.+++|.+.|.. .+.+.| .|--
T Consensus 162 mGmGEPLln~-~~v~~~l~~l~~~~Gl~~~~r~itvs-T~G---~~~~i~~L~~~~l~-~L~iSLha~~~e~r~~i~p~~ 235 (354)
T PRK14460 162 MGMGEPLLNL-DEVMRSLRTLNNEKGLNFSPRRITVS-TCG---IEKGLRELGESGLA-FLAVSLHAPNQELRERIMPKA 235 (354)
T ss_pred ecCCcccCCH-HHHHHHHHHHhhhhccCCCCCeEEEE-CCC---ChHHHHHHHhCCCc-EEEEeCCCCCHHHHHHhcCcc
Confidence 3778899853 45556665433333422 122221 122 24677888887774 344443 2221
Q ss_pred cccchHHHHHHHHHHHHhhccCCCCCEEEecCCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEEecCCchhhhccCCCc
Q 019457 228 SISTTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDP 307 (340)
Q Consensus 228 S~sTtgS~~~~l~~~~~~~~~~~~~~v~~I~~~~~~p~yI~a~a~~I~~~L~~~~~~~~~~LlFSaHglP~~~ie~~GDp 307 (340)
........++.+.+...+....-.+++-+|+.+-+.+.-++++++.+++. + ..+ =|+-+|-++ |-+
T Consensus 236 ~~~~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~~----~--~~V-nLIpyn~~~-------g~~ 301 (354)
T PRK14460 236 ARWPLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSRT----K--CKL-NLIVYNPAE-------GLP 301 (354)
T ss_pred ccCCHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhcC----C--CcE-EEEcCCCCC-------CCC
Confidence 11122333333333222221111234668999999999999999887642 1 223 345777542 445
Q ss_pred hHHHHHHHHHHHHHHhhccCC
Q 019457 308 YRDQMEECIYLIMQRLKDRGI 328 (340)
Q Consensus 308 Y~~q~~~T~~~Iae~L~~~gl 328 (340)
|..-..+.++.+.+.|...|+
T Consensus 302 y~~p~~e~v~~f~~~l~~~Gi 322 (354)
T PRK14460 302 YSAPTEERILAFEKYLWSKGI 322 (354)
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 554444455555555654465
No 114
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=23.84 E-value=2.4e+02 Score=26.70 Aligned_cols=55 Identities=7% Similarity=0.090 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhcCCCceeEeeeeccCCCHHHHHHHHHHcCCCEEEEEecCCC
Q 019457 171 ITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLPLYPQ 226 (340)
Q Consensus 171 ~T~~Qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eal~~l~~~G~~~IvvlPLyPq 226 (340)
+.+..++.+++.+.+.|.++.-..-+.-..+.+...+.++++.|.+- |++..++.
T Consensus 149 ~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~i~~~~~d~-vi~~~~~~ 203 (344)
T cd06348 149 FSVSETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAVLNSKPDL-IVISALAA 203 (344)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCE-EEECCcch
Confidence 66788888888888877555433444456778889999999999885 44555554
No 115
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=23.61 E-value=19 Score=33.00 Aligned_cols=58 Identities=28% Similarity=0.562 Sum_probs=43.0
Q ss_pred EEEecCCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEEecCCchhhhccCCCchHHHHHHHH
Q 019457 254 VSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECI 316 (340)
Q Consensus 254 v~~I~~~~~~p~yI~a~a~~I~~~L~~~~~~~~~~LlFSaHglP~~~ie~~GDpY~~q~~~T~ 316 (340)
+..|..|.++++.++.|+..+++.|.-| +.+.=++-.-|+|..-+ ..|||..++...+
T Consensus 38 ~~L~~rY~~~~~Lv~~m~~LarEEL~HF---eqV~~im~~Rgi~l~~~--~~~~Ya~~L~k~v 95 (180)
T cd07910 38 MSLIFRYPEKPELVEAMSDLAREELQHF---EQVLKIMKKRGIPLGPD--SKDPYASGLRKLV 95 (180)
T ss_pred HHHHHHcCCcHhHHHHHHHHHHHHHHHH---HHHHHHHHHcCCCCCCC--CCCHHHHHHHHHc
Confidence 6778899999999999999999998755 22323345567777665 3688987776544
No 116
>KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=23.61 E-value=85 Score=33.43 Aligned_cols=61 Identities=26% Similarity=0.305 Sum_probs=39.4
Q ss_pred CChHHHHHHHHHHHHHHhhcCCCCceEEEEEecCCchhhhccCCCchHHHHHHHHHHHHHHhhccCC---CCCeEEEEec
Q 019457 262 QREGYVNSMADLIQKELGKFQKPEEVMIFFSAHGVPVSYVEKAGDPYRDQMEECIYLIMQRLKDRGI---NNDHTLAYQV 338 (340)
Q Consensus 262 ~~p~yI~a~a~~I~~~L~~~~~~~~~~LlFSaHglP~~~ie~~GDpY~~q~~~T~~~Iae~L~~~gl---~~~~~layQS 338 (340)
..+.|.+.+-+.|.+.+.-. ++..|=.-.||=|.|. | .++-..|+|. |+ .+.|..+|=|
T Consensus 460 S~edY~k~I~~Ei~kVvkfQ---EelgiDVLVHGEpERN-----D--------MVeyFGEql~--GfaFTvNGWVQSYGS 521 (765)
T KOG2263|consen 460 SEEDYVKFIKEEIEKVVKFQ---EELGIDVLVHGEPERN-----D--------MVEYFGEQLS--GFAFTVNGWVQSYGS 521 (765)
T ss_pred CHHHHHHHHHHHHHHHHhHH---HHhCccEEecCCcccc-----c--------HHHHHHhhcc--ceEEEecchhHhhcC
Confidence 46788888888887766432 2223334569999764 1 4455566764 55 2569999988
Q ss_pred CC
Q 019457 339 WF 340 (340)
Q Consensus 339 rf 340 (340)
|.
T Consensus 522 Rc 523 (765)
T KOG2263|consen 522 RC 523 (765)
T ss_pred cc
Confidence 84
No 117
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=23.20 E-value=2.5e+02 Score=26.53 Aligned_cols=52 Identities=8% Similarity=-0.042 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCceeEeeeeccCCCHHHHHHHHHHcCCCEEEEE
Q 019457 170 KITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVL 221 (340)
Q Consensus 170 ~~T~~Qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eal~~l~~~G~~~Ivvl 221 (340)
.+.+.+++.+++.|.+.|.++.....+....+.....+.++++.+.+-|++.
T Consensus 146 ~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~ 197 (340)
T cd06349 146 DWGRTSADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRDANPDAIILI 197 (340)
T ss_pred hHhHHHHHHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHHhcCCCEEEEc
Confidence 4778888999999988775544333344456778889999999999865553
No 118
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=22.80 E-value=5.6e+02 Score=23.01 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=6.8
Q ss_pred HHHHHHHHHHcCC
Q 019457 203 TEEAVQQIKRDRI 215 (340)
Q Consensus 203 i~eal~~l~~~G~ 215 (340)
+.+.++++.+.|+
T Consensus 71 ~~~~~~~~~~~~i 83 (275)
T cd06320 71 LVPAVERAKKKGI 83 (275)
T ss_pred hHHHHHHHHHCCC
Confidence 3445555555555
No 119
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.76 E-value=1.5e+02 Score=26.85 Aligned_cols=14 Identities=14% Similarity=0.218 Sum_probs=7.9
Q ss_pred HHHHHHHHHHcCCC
Q 019457 203 TEEAVQQIKRDRIT 216 (340)
Q Consensus 203 i~eal~~l~~~G~~ 216 (340)
+.+.++.+.+.|+-
T Consensus 71 ~~~~l~~~~~~~ip 84 (271)
T cd06312 71 LDPAIKRAVAAGIP 84 (271)
T ss_pred hHHHHHHHHHCCCe
Confidence 34556666666653
No 120
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=22.72 E-value=33 Score=30.60 Aligned_cols=27 Identities=30% Similarity=0.580 Sum_probs=23.5
Q ss_pred EEEccCCCC------C--cCcHHHHHHhhcCCCCc
Q 019457 103 LLLNLGGPD------T--LHDVQPFLFNLFADPDI 129 (340)
Q Consensus 103 LLlNlG~P~------s--~~dV~~FL~~~l~D~~V 129 (340)
++.|-|||+ + -+||++=|+.++.|+.|
T Consensus 22 ~~~n~~GpeFYl~~~S~sW~eVEdkLraIl~d~~V 56 (152)
T PF15186_consen 22 MLRNGGGPEFYLENRSLSWEEVEDKLRAILEDSQV 56 (152)
T ss_pred HHhcCCCchHHHHhccCCHHHHHHHHHHHHhCccC
Confidence 578999999 2 26999999999999987
No 121
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=22.50 E-value=2.8e+02 Score=27.10 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=26.6
Q ss_pred ceEEEEEecCCchhhhc---cCC-------CchHHHHHHHHHHHHHH
Q 019457 286 EVMIFFSAHGVPVSYVE---KAG-------DPYRDQMEECIYLIMQR 322 (340)
Q Consensus 286 ~~~LlFSaHglP~~~ie---~~G-------DpY~~q~~~T~~~Iae~ 322 (340)
...+||+|||+|....+ ++| -||...++..++...++
T Consensus 66 ~~~ViirAHGv~~~~~~~~~~~gl~viDaTCP~V~kv~~~v~~~~~~ 112 (280)
T TIGR00216 66 GDTVIIRAHGVPPEVREELEKKGLEVIDATCPLVTKVHNAVKKYAKE 112 (280)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCeEEeCCCcccHHHHHHHHHHHhC
Confidence 34799999999987642 234 37888888877766654
No 122
>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. The N-terminal domain of APOBEC-1 like proteins is the catalytic domain, while the C-terminal domain is a pseudocatalyitc domain. More specifically, the catalytic domain is a zinc dependent deaminases domain and is essential for cytidine deamination. APOBEC-3 like members contain two copies of this domain. This family also includes the functionally homologous activation induced deaminase, which is essential for the development of antibody diversity in B lymphocytes. RNA editing by APOBEC-1 requires homodimerisation and this complex interacts with RNA binding proteins to from the editosome [] (and references therein).; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 3IQS_A 3IR2_A 3V4J_B 2KEM_A 2KBO_A 3V4K_A 3E1U_A 2JYW_A 2RPZ_A.
Probab=22.40 E-value=88 Score=28.57 Aligned_cols=103 Identities=13% Similarity=0.184 Sum_probs=55.2
Q ss_pred HhhcccC--CCCchhHHHHHHHHHHHHHHHhc---CCCceeEee--eeccCCC---HHHHHHHHHHcCCCEEEEEecCCC
Q 019457 157 EGYAAIG--GGSPLRKITDEQAQALKTALEAK---NLPVNVYVG--MRYWYPF---TEEAVQQIKRDRITRLVVLPLYPQ 226 (340)
Q Consensus 157 ~~Y~~IG--ggSPL~~~T~~Qa~~L~~~L~~~---g~~~~V~~a--MrY~~P~---i~eal~~l~~~G~~~IvvlPLyPq 226 (340)
..|+-+. --||=...+..=|++|.+-|.+. ++.+.++++ +.++.|. ..++|+.|.++|++ |=+|-+
T Consensus 72 ~~y~ITwy~SwSPC~~~~~~Ca~~i~~FL~~~~~~~v~L~I~~arLY~~~~~~~~~~~eGLr~L~~aGv~---v~iM~~- 147 (188)
T PF08210_consen 72 QIYRITWYLSWSPCPESDHCCAEKIAEFLKKHLKPNVSLSIFAARLYYHWEPEPLWNQEGLRRLASAGVQ---VEIMSY- 147 (188)
T ss_dssp SEEEEEEEESSS--CC----HHHHHHHHHCCC--TTEEEEEEESS--STTSTT---HHHHHHHHHHCTEE---EEE-SH-
T ss_pred ceEEEEEEEecCCCcchhhHHHHHHHHHHHHhCCCCCeEEEEEEeeeeecCCcchhHHHHHHHHHHcCCE---EEEcCH-
Confidence 4555553 34888874444555666666554 567788888 5566888 89999999999875 333311
Q ss_pred ccccchHHHHHHHHHHHHhhccCCCCCE--EEecCCCCChHHHHHHHHHHHHH
Q 019457 227 FSISTTGSSIRVLQNIFREDAYLSRLPV--SIIRSWYQREGYVNSMADLIQKE 277 (340)
Q Consensus 227 YS~sTtgS~~~~l~~~~~~~~~~~~~~v--~~I~~~~~~p~yI~a~a~~I~~~ 277 (340)
.++...++.... .. +--.+|-+.+...+.+...+...
T Consensus 148 ----------~df~~cw~~FV~----~~~~~~f~pW~~l~~~~~~~~~~l~~i 186 (188)
T PF08210_consen 148 ----------KDFEYCWDNFVH----NGENRPFQPWEKLEENSQRLQRQLQNI 186 (188)
T ss_dssp ----------HHHHHHHHCCET----TT-S-S----TTCCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHhccc----ccCCCCCCccchhhHHHHHHHHHHHHh
Confidence 133333332210 11 34557888888877777666543
No 123
>KOG3871 consensus Cell adhesion complex protein bystin [Extracellular structures]
Probab=21.95 E-value=1.7e+02 Score=29.92 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=51.5
Q ss_pred cCcHHHHHHhhcCCCCcccCChhhhhhhhHHHHHHHhccchhhHHhhcccCCCCchhHHHHHHHHHHHHHHHhcCCCcee
Q 019457 113 LHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNLPVNV 192 (340)
Q Consensus 113 ~~dV~~FL~~~l~D~~VI~lP~~~~~~~~~L~~lI~~~R~~ksa~~Y~~IGggSPL~~~T~~Qa~~L~~~L~~~g~~~~V 192 (340)
++++--+.-.|-.|.|++++ +|. |. ++.+ +.+|+ +.+|.+|-++|.+.|..+|
T Consensus 359 vD~~V~hFmrf~~d~R~lpV---lwH-qs-----lLtf-----~QRYK--------~di~~eqkdaLlellr~~~----- 411 (449)
T KOG3871|consen 359 VDALVFHFMRFRTDERVLPV---LWH-QS-----LLTF-----AQRYK--------NDITQEQKDALLELLRLQG----- 411 (449)
T ss_pred HHHHHHHHHHhhccccchhH---HHH-HH-----HHHH-----HHHHh--------hhcCHHHHHHHHHHHHhcC-----
Confidence 35666677778888887543 332 22 2222 47786 4689999999999998664
Q ss_pred EeeeeccCCCH-HHHHHHHHHcCCCEEEEEec
Q 019457 193 YVGMRYWYPFT-EEAVQQIKRDRITRLVVLPL 223 (340)
Q Consensus 193 ~~aMrY~~P~i-~eal~~l~~~G~~~IvvlPL 223 (340)
|+.| +|+.++|.....+.....+|
T Consensus 412 -------H~~i~PEIrREL~~~~~r~~~~~~~ 436 (449)
T KOG3871|consen 412 -------HYLIGPEIRRELLASASRDEEDPQM 436 (449)
T ss_pred -------CCcCCHHHHHHHHhccccCccccch
Confidence 4444 67888888766666655555
No 124
>PRK05660 HemN family oxidoreductase; Provisional
Probab=21.88 E-value=2e+02 Score=28.79 Aligned_cols=57 Identities=14% Similarity=0.234 Sum_probs=31.9
Q ss_pred cCCCCchh---HHHHHHHHHHHHHHHhcCCCceeEeeeeccCCCHHHHHHHHHHcCCCEEEE
Q 019457 162 IGGGSPLR---KITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVV 220 (340)
Q Consensus 162 IGggSPL~---~~T~~Qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eal~~l~~~G~~~Ivv 220 (340)
+|||.|.. ..-.+..+.+++.++-. .+..|.+-. ...-..++-++.|++.|+++|-+
T Consensus 64 ~GGGtPs~l~~~~l~~ll~~l~~~~~~~-~~~eit~e~-np~~l~~e~l~~Lk~~Gv~risi 123 (378)
T PRK05660 64 IGGGTPSLFSAEAIQRLLDGVRARLPFA-PDAEITMEA-NPGTVEADRFVGYQRAGVNRISI 123 (378)
T ss_pred eCCCccccCCHHHHHHHHHHHHHhCCCC-CCcEEEEEe-CcCcCCHHHHHHHHHcCCCEEEe
Confidence 39999986 34444444454443211 112222211 12223578899999999997755
No 125
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.81 E-value=7.1e+02 Score=23.84 Aligned_cols=74 Identities=15% Similarity=0.178 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHcCCCEEEEEecCCCccccchHHHHHHHHHHHHhhccC-CCCCEEEecCCCCChHHHHHHHHHHHHHHh
Q 019457 201 PFTEEAVQQIKRDRITRLVVLPLYPQFSISTTGSSIRVLQNIFREDAYL-SRLPVSIIRSWYQREGYVNSMADLIQKELG 279 (340)
Q Consensus 201 P~i~eal~~l~~~G~~~IvvlPLyPqYS~sTtgS~~~~l~~~~~~~~~~-~~~~v~~I~~~~~~p~yI~a~a~~I~~~L~ 279 (340)
|-.++-+++|++.|++ +++-+.|.-+........+.+.+ ..... ......++ + +.+|.+.+.|-+.+.+.+.
T Consensus 74 Pdp~~mi~~Lh~~G~k--~v~~v~P~~~~~~~~~~y~~~~~---~~~~~~~~~~~~~~-D-~tnp~a~~~w~~~~~~~~~ 146 (292)
T cd06595 74 PDPEKLLQDLHDRGLK--VTLNLHPADGIRAHEDQYPEMAK---ALGVDPATEGPILF-D-LTNPKFMDAYFDNVHRPLE 146 (292)
T ss_pred CCHHHHHHHHHHCCCE--EEEEeCCCcccCCCcHHHHHHHH---hcCCCcccCCeEEe-c-CCCHHHHHHHHHHHHHHHH
Confidence 8889999999999997 55666786432211111222221 11111 11112222 3 3579999988888877765
Q ss_pred hc
Q 019457 280 KF 281 (340)
Q Consensus 280 ~~ 281 (340)
..
T Consensus 147 ~~ 148 (292)
T cd06595 147 KQ 148 (292)
T ss_pred hc
Confidence 44
No 126
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=21.37 E-value=2.1e+02 Score=28.85 Aligned_cols=53 Identities=21% Similarity=0.379 Sum_probs=31.3
Q ss_pred CCCCchhHHHHHH---HHHHHHHHHhcC-CCceeEeeeeccCC--CHHHHHHHHHHcCCCEEEE
Q 019457 163 GGGSPLRKITDEQ---AQALKTALEAKN-LPVNVYVGMRYWYP--FTEEAVQQIKRDRITRLVV 220 (340)
Q Consensus 163 GggSPL~~~T~~Q---a~~L~~~L~~~g-~~~~V~~aMrY~~P--~i~eal~~l~~~G~~~Ivv 220 (340)
|||.|..--++.+ .+.|++.++-.. .++.++. +| ...|-++.|++.|+++|-+
T Consensus 80 GGGTPs~L~~~~L~~ll~~i~~~~~~~~~~eit~E~-----~p~~~~~e~L~~l~~~Gvnrisi 138 (394)
T PRK08898 80 GGGTPSLLSAAGLDRLLSDVRALLPLDPDAEITLEA-----NPGTFEAEKFAQFRASGVNRLSI 138 (394)
T ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEEE-----CCCCCCHHHHHHHHHcCCCeEEE
Confidence 9999987444433 334444332211 1233332 34 3468899999999998765
No 127
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=21.35 E-value=2.9e+02 Score=26.29 Aligned_cols=53 Identities=15% Similarity=-0.043 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCceeEeeeeccCCCHHHHHHHHHHcCCCEEEEEe
Q 019457 170 KITDEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLVVLP 222 (340)
Q Consensus 170 ~~T~~Qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eal~~l~~~G~~~IvvlP 222 (340)
.+.+..++.+++.+.+.|.++.-..-+....+.....+.+|++.+.+-|++..
T Consensus 155 ~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~ 207 (344)
T cd06345 155 AWGKGIDAGIKALLPEAGLEVVSVERFSPDTTDFTPILQQIKAADPDVIIAGF 207 (344)
T ss_pred hhhhHHHHHHHHHHHHcCCeEEEEEecCCCCCchHHHHHHHHhcCCCEEEEee
Confidence 45667788888888877755443344555567788999999999988555543
No 128
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=21.23 E-value=2.2e+02 Score=27.77 Aligned_cols=32 Identities=9% Similarity=0.086 Sum_probs=22.5
Q ss_pred ccCCCHHHHHHHHHHcCCCEEEEEecCCCccc
Q 019457 198 YWYPFTEEAVQQIKRDRITRLVVLPLYPQFSI 229 (340)
Q Consensus 198 Y~~P~i~eal~~l~~~G~~~IvvlPLyPqYS~ 229 (340)
++|-...++.+...+.++.+++++-..|+|..
T Consensus 219 ~gH~t~~eaa~~A~~a~vk~LiLtH~Ssry~~ 250 (277)
T TIGR02650 219 KKHAAADDEMEESKKAAGKKKIILHHISRRII 250 (277)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeecccccH
Confidence 56666777777677777777777777777653
No 129
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=21.05 E-value=2.2e+02 Score=28.71 Aligned_cols=152 Identities=14% Similarity=0.163 Sum_probs=72.8
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhc-C--CCceeEeeeeccCC--CHHHHHHHHHHcCCCEEEEEecCCCcc-------c
Q 019457 162 IGGGSPLRKITDEQAQALKTALEAK-N--LPVNVYVGMRYWYP--FTEEAVQQIKRDRITRLVVLPLYPQFS-------I 229 (340)
Q Consensus 162 IGggSPL~~~T~~Qa~~L~~~L~~~-g--~~~~V~~aMrY~~P--~i~eal~~l~~~G~~~IvvlPLyPqYS-------~ 229 (340)
+|||.|..--.+.+ +.|-+.+.+. . ....+.+ - .+| ..++.++.|++.|+++|-+=.-.-.-. .
T Consensus 68 ~GGGTPs~l~~~~l-~~ll~~i~~~~~~~~~~eiti--E-~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lgR~ 143 (390)
T PRK06582 68 FGGGTPSLMNPVIV-EGIINKISNLAIIDNQTEITL--E-TNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKLGRT 143 (390)
T ss_pred ECCCccccCCHHHH-HHHHHHHHHhCCCCCCCEEEE--E-eCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcCCC
Confidence 39999954333333 3322333321 1 1122222 1 245 448899999999999885432211100 1
Q ss_pred cchHHHHHHHHHHHHhhccCCCCCEEEecCCCCChHHHHHHHHHHHHHHhhcCCCCceEEEEEecC------Cchhhhcc
Q 019457 230 STTGSSIRVLQNIFREDAYLSRLPVSIIRSWYQREGYVNSMADLIQKELGKFQKPEEVMIFFSAHG------VPVSYVEK 303 (340)
Q Consensus 230 sTtgS~~~~l~~~~~~~~~~~~~~v~~I~~~~~~p~yI~a~a~~I~~~L~~~~~~~~~~LlFSaHg------lP~~~ie~ 303 (340)
-|...+.+.+..+ ++. ...+.+.+|-....+. .+.|.+.++..++-. ++ + +|+|+ .|..-..+
T Consensus 144 h~~~~~~~ai~~~-~~~--~~~v~~DlI~GlPgqt--~e~~~~~l~~~~~l~--p~--h--is~y~L~i~~gT~l~~~~~ 212 (390)
T PRK06582 144 HDCMQAIKTIEAA-NTI--FPRVSFDLIYARSGQT--LKDWQEELKQAMQLA--TS--H--ISLYQLTIEKGTPFYKLFK 212 (390)
T ss_pred CCHHHHHHHHHHH-HHh--CCcEEEEeecCCCCCC--HHHHHHHHHHHHhcC--CC--E--EEEecCEEccCChHHHHHh
Confidence 1222223333222 221 2345678887776653 345556666665432 33 2 24443 33321111
Q ss_pred CCC---chHHHHHHHHHHHHHHhhccCC
Q 019457 304 AGD---PYRDQMEECIYLIMQRLKDRGI 328 (340)
Q Consensus 304 ~GD---pY~~q~~~T~~~Iae~L~~~gl 328 (340)
+|. |=.++..+..+.+.+.|...|+
T Consensus 213 ~g~~~~p~~~~~~~~~~~~~~~L~~~Gy 240 (390)
T PRK06582 213 EGNLILPHSDAAAEMYEWTNHYLESKKY 240 (390)
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHHcCC
Confidence 232 2234555566667777766676
No 130
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.29 E-value=2e+02 Score=25.79 Aligned_cols=44 Identities=14% Similarity=0.119 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhcCCCceeEeeeeccCCCHHHHHHHHHHcCCCEEE
Q 019457 173 DEQAQALKTALEAKNLPVNVYVGMRYWYPFTEEAVQQIKRDRITRLV 219 (340)
Q Consensus 173 ~~Qa~~L~~~L~~~g~~~~V~~aMrY~~P~i~eal~~l~~~G~~~Iv 219 (340)
+.|.+.++..+. .+.+.-+..+. ..+...+.++++.+.|+.-|.
T Consensus 42 ~~~~~~~~~~~~-~~vdgiii~~~--~~~~~~~~~~~~~~~~ipvV~ 85 (267)
T cd06322 42 NKQLSDVEDFIT-KKVDAIVLSPV--DSKGIRAAIAKAKKAGIPVIT 85 (267)
T ss_pred HHHHHHHHHHHH-cCCCEEEEcCC--ChhhhHHHHHHHHHCCCCEEE
Confidence 345555655443 33343333321 123345677888777776333
Done!