BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019459
(340 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1L7A|A Chain A, Structural Genomics, Crystal Structure Of Cephalosporin C
Deacetylase
pdb|1L7A|B Chain B, Structural Genomics, Crystal Structure Of Cephalosporin C
Deacetylase
Length = 318
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 153 AYPDKDGGNNGYTAHHSFNGSTDMGNTVDEVSRNTAQRFSLTPYITPRLTPTGTPKVIST 212
A PDK+G + +H +N S D G + V+ ++L Y T + G + T
Sbjct: 74 AVPDKEGPHPAIVKYHGYNASYD-GEIHEMVN------WALHGYATFGMLVRGQQRSEDT 126
Query: 213 SVSPRGYSVAGSPK 226
S+SP G+++ K
Sbjct: 127 SISPHGHALGWMTK 140
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 156 DKDGGNNGYTAHHSFNGSTDMGNTVDEVSRNTAQRFSLTPYITPRLTPTGTPKVIS 211
++DG NN Y+ +H G +G ++D V R +R S+ +T L GTP +++
Sbjct: 465 NRDGTNNNYSNNH---GKEGLGGSLDLVER---RRDSIHALLTTLLLSQGTPMLLA 514
>pdb|1ODT|C Chain C, Cephalosporin C Deacetylase Mutated, In Complex With
Acetate
pdb|1ODT|H Chain H, Cephalosporin C Deacetylase Mutated, In Complex With
Acetate
Length = 318
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 153 AYPDKDGGNNGYTAHHSFNGSTDMGNTVDEVSRNTAQRFSLTPYITPRLTPTGTPKVIST 212
A PDK+G + +H +N S D G + V+ ++L Y T + G T
Sbjct: 74 AVPDKEGPHPAIVKYHGYNASYD-GEIHEMVN------WALHGYATFGMLVRGQQSSEDT 126
Query: 213 SVSPRGYSVAGSPK 226
S+SP G+++ K
Sbjct: 127 SISPHGHALGWMTK 140
>pdb|1ODS|A Chain A, Cephalosporin C Deacetylase From Bacillus Subtilis
pdb|1ODS|B Chain B, Cephalosporin C Deacetylase From Bacillus Subtilis
pdb|1ODS|C Chain C, Cephalosporin C Deacetylase From Bacillus Subtilis
pdb|1ODS|D Chain D, Cephalosporin C Deacetylase From Bacillus Subtilis
pdb|1ODS|E Chain E, Cephalosporin C Deacetylase From Bacillus Subtilis
pdb|1ODS|F Chain F, Cephalosporin C Deacetylase From Bacillus Subtilis
pdb|1ODS|G Chain G, Cephalosporin C Deacetylase From Bacillus Subtilis
pdb|1ODS|H Chain H, Cephalosporin C Deacetylase From Bacillus Subtilis
Length = 318
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 153 AYPDKDGGNNGYTAHHSFNGSTDMGNTVDEVSRNTAQRFSLTPYITPRLTPTGTPKVIST 212
A PDK+G + +H +N S D G + V+ ++L Y T + G T
Sbjct: 74 AVPDKEGPHPAIVKYHGYNASYD-GEIHEMVN------WALHGYATFGMLVRGQQSSEDT 126
Query: 213 SVSPRGYSVAGSPK 226
S+SP G+++ K
Sbjct: 127 SISPHGHALGWMTK 140
>pdb|3J21|W Chain W, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 72
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 11/53 (20%)
Query: 82 YQEADSKLKIFIDDNAKLAKERDSLAM--------TARNLSRDLAKLETFKRQ 126
+E D+K++ + +LAKER L M RNL RD+A+L T K++
Sbjct: 11 IEEIDAKIR---ELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKKE 60
>pdb|4G1T|A Chain A, Crystal Structure Of Interferon-Stimulated Gene 54
pdb|4G1T|B Chain B, Crystal Structure Of Interferon-Stimulated Gene 54
Length = 472
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 295 FLASIKELNAQKQTREETLRKAEEIFGTDNKD 326
LA +K L Q + E LRKAEE+ ++ D
Sbjct: 56 LLAYLKHLKGQNEAALECLRKAEELIQQEHAD 87
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVF|B Chain B, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVH|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
Length = 591
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 60 MLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAK 119
+L EKD L E+ R H+ V Q KLK F D+ ++ D + ++LS+ L K
Sbjct: 277 LLDEKDDLWVEM--RHQHIAVVSQNVTKKLKQFADEK-RMGTAADKAGI--KDLSQMLKK 331
Query: 120 LETFKRQL 127
+ ++++L
Sbjct: 332 MPQYQKEL 339
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,544,787
Number of Sequences: 62578
Number of extensions: 366690
Number of successful extensions: 759
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 756
Number of HSP's gapped (non-prelim): 13
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)