Query 019459
Match_columns 340
No_of_seqs 78 out of 80
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 09:38:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019459.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019459hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02671 PAH: Paired amphipath 97.1 0.0019 4.2E-08 46.1 6.0 46 289-335 1-46 (47)
2 PF06637 PV-1: PV-1 protein (P 97.0 0.0074 1.6E-07 61.2 12.0 72 49-120 282-375 (442)
3 PRK10884 SH3 domain-containing 96.7 0.026 5.5E-07 52.7 11.5 68 43-113 91-158 (206)
4 PF08614 ATG16: Autophagy prot 96.6 0.045 9.7E-07 49.7 12.3 79 42-120 113-192 (194)
5 PRK11637 AmiB activator; Provi 96.5 0.039 8.5E-07 55.4 12.6 87 47-133 49-135 (428)
6 PRK11637 AmiB activator; Provi 96.2 0.11 2.3E-06 52.3 13.5 71 49-119 44-114 (428)
7 PF11559 ADIP: Afadin- and alp 95.9 0.16 3.5E-06 44.0 11.8 72 49-120 70-145 (151)
8 PF12718 Tropomyosin_1: Tropom 95.8 0.21 4.6E-06 44.0 12.2 95 37-131 6-103 (143)
9 PF10473 CENP-F_leu_zip: Leuci 95.7 0.33 7.2E-06 43.2 12.9 91 42-132 21-111 (140)
10 PF12329 TMF_DNA_bd: TATA elem 95.6 0.18 3.8E-06 40.1 10.0 63 56-121 2-67 (74)
11 PF08614 ATG16: Autophagy prot 95.4 0.2 4.3E-06 45.5 10.7 89 43-131 93-181 (194)
12 PF10186 Atg14: UV radiation r 95.3 0.45 9.8E-06 44.1 13.3 92 42-133 60-155 (302)
13 PRK09039 hypothetical protein; 95.3 0.32 7E-06 48.3 12.8 91 42-132 113-204 (343)
14 PF08647 BRE1: BRE1 E3 ubiquit 94.8 0.96 2.1E-05 37.3 12.3 87 47-133 5-91 (96)
15 KOG0977 Nuclear envelope prote 94.8 0.52 1.1E-05 50.0 13.3 86 33-118 95-193 (546)
16 COG1579 Zn-ribbon protein, pos 94.7 0.71 1.5E-05 44.4 12.9 45 48-92 34-78 (239)
17 PF11559 ADIP: Afadin- and alp 94.7 0.55 1.2E-05 40.8 11.1 68 48-122 55-122 (151)
18 COG1579 Zn-ribbon protein, pos 94.6 0.68 1.5E-05 44.5 12.4 88 34-121 48-137 (239)
19 KOG0994 Extracellular matrix g 94.4 0.21 4.5E-06 57.0 9.7 93 42-134 1198-1316(1758)
20 COG2433 Uncharacterized conser 94.4 0.63 1.4E-05 50.0 12.9 88 41-128 425-515 (652)
21 TIGR03185 DNA_S_dndD DNA sulfu 94.2 0.95 2.1E-05 48.1 13.8 72 40-111 393-466 (650)
22 PF04156 IncA: IncA protein; 94.2 1.6 3.4E-05 38.9 13.2 86 42-127 85-170 (191)
23 PRK02224 chromosome segregatio 94.0 1.4 3E-05 47.7 14.9 18 46-63 181-198 (880)
24 PF10205 KLRAQ: Predicted coil 94.0 0.84 1.8E-05 38.9 10.4 72 49-120 2-73 (102)
25 PF11180 DUF2968: Protein of u 94.0 1.1 2.3E-05 42.1 11.9 78 45-122 105-182 (192)
26 PF14197 Cep57_CLD_2: Centroso 93.9 0.93 2E-05 35.8 9.9 61 49-109 2-62 (69)
27 PHA02562 46 endonuclease subun 93.9 0.74 1.6E-05 46.9 11.8 10 293-302 516-525 (562)
28 PRK03918 chromosome segregatio 93.7 2.1 4.6E-05 46.1 15.4 32 23-54 154-185 (880)
29 PF04111 APG6: Autophagy prote 93.6 1.2 2.5E-05 43.9 12.2 80 42-121 47-133 (314)
30 PF12718 Tropomyosin_1: Tropom 93.6 1.6 3.5E-05 38.5 11.9 79 42-120 39-127 (143)
31 PF05911 DUF869: Plant protein 93.5 1 2.2E-05 49.7 12.7 61 37-98 10-70 (769)
32 PF10224 DUF2205: Predicted co 93.4 0.43 9.4E-06 38.9 7.4 47 69-115 19-65 (80)
33 TIGR02169 SMC_prok_A chromosom 93.3 1.4 3.1E-05 48.2 13.5 61 61-121 863-923 (1164)
34 KOG0995 Centromere-associated 92.9 1.6 3.5E-05 46.6 12.6 92 45-136 259-367 (581)
35 COG4026 Uncharacterized protei 92.7 2.4 5.3E-05 41.1 12.5 90 31-120 104-203 (290)
36 TIGR02168 SMC_prok_B chromosom 92.5 2.1 4.6E-05 46.5 13.3 9 313-321 1155-1163(1179)
37 TIGR02169 SMC_prok_A chromosom 92.4 2.1 4.6E-05 46.8 13.3 11 311-321 1138-1148(1164)
38 KOG3990 Uncharacterized conser 92.4 0.51 1.1E-05 46.2 7.6 35 47-81 227-261 (305)
39 PF13870 DUF4201: Domain of un 92.4 4.8 0.0001 35.9 13.4 52 29-84 44-95 (177)
40 PF08317 Spc7: Spc7 kinetochor 92.4 1.7 3.7E-05 42.6 11.4 20 43-62 182-201 (325)
41 KOG0804 Cytoplasmic Zn-finger 92.4 3.2 6.8E-05 43.6 13.6 101 29-133 327-442 (493)
42 PF00769 ERM: Ezrin/radixin/mo 92.2 2.5 5.4E-05 40.3 11.9 82 42-123 9-97 (246)
43 PF03962 Mnd1: Mnd1 family; I 92.2 1.9 4.1E-05 39.6 10.8 76 49-125 66-142 (188)
44 PRK10884 SH3 domain-containing 92.2 1.5 3.3E-05 41.0 10.3 73 42-117 97-169 (206)
45 PF13863 DUF4200: Domain of un 92.1 6.1 0.00013 32.9 13.9 67 65-131 38-104 (126)
46 PF11932 DUF3450: Protein of u 92.1 4.2 9.2E-05 38.2 13.3 46 46-91 43-88 (251)
47 PF00261 Tropomyosin: Tropomyo 91.9 3.2 7E-05 38.9 12.2 79 41-119 88-166 (237)
48 PF04156 IncA: IncA protein; 91.7 3.4 7.4E-05 36.7 11.7 72 50-121 79-150 (191)
49 PF08317 Spc7: Spc7 kinetochor 91.7 3.7 8.1E-05 40.2 12.9 34 56-89 213-246 (325)
50 smart00787 Spc7 Spc7 kinetocho 91.7 3.1 6.7E-05 41.2 12.3 56 53-108 205-260 (312)
51 PRK02224 chromosome segregatio 91.5 4.2 9.2E-05 44.1 14.1 41 47-87 518-558 (880)
52 KOG1103 Predicted coiled-coil 91.5 7.8 0.00017 40.0 15.0 79 44-125 219-300 (561)
53 KOG0994 Extracellular matrix g 91.2 5.7 0.00012 46.1 14.9 114 16-129 1497-1637(1758)
54 PHA02562 46 endonuclease subun 91.2 3.7 7.9E-05 42.0 12.7 35 44-78 336-370 (562)
55 PF10186 Atg14: UV radiation r 91.0 8 0.00017 35.9 13.8 88 42-129 67-154 (302)
56 PF03148 Tektin: Tektin family 90.8 9.7 0.00021 38.4 15.1 101 31-131 237-354 (384)
57 PF00038 Filament: Intermediat 90.7 3.9 8.5E-05 38.9 11.7 42 50-91 52-93 (312)
58 PRK09039 hypothetical protein; 90.7 2.3 4.9E-05 42.4 10.4 48 46-93 138-185 (343)
59 PF09726 Macoilin: Transmembra 90.7 2.1 4.6E-05 46.7 10.9 43 38-80 538-580 (697)
60 PF08172 CASP_C: CASP C termin 90.6 2.5 5.5E-05 40.6 10.2 34 48-81 2-35 (248)
61 COG4942 Membrane-bound metallo 90.5 2.6 5.7E-05 43.6 10.9 64 49-115 63-126 (420)
62 PF00261 Tropomyosin: Tropomyo 90.5 6.9 0.00015 36.7 12.9 73 43-115 139-218 (237)
63 TIGR02231 conserved hypothetic 90.4 3 6.5E-05 43.1 11.3 81 42-122 68-166 (525)
64 PRK10698 phage shock protein P 90.2 5.6 0.00012 37.3 12.0 94 27-131 24-143 (222)
65 PF04899 MbeD_MobD: MbeD/MobD 90.1 3 6.4E-05 33.3 8.6 53 69-121 17-69 (70)
66 KOG0250 DNA repair protein RAD 89.9 3.7 8E-05 46.8 12.1 34 98-131 391-424 (1074)
67 PF06156 DUF972: Protein of un 89.8 1.8 4E-05 36.8 7.7 49 67-115 9-57 (107)
68 PF04012 PspA_IM30: PspA/IM30 89.8 9.4 0.0002 34.9 12.9 94 27-131 23-128 (221)
69 KOG0963 Transcription factor/C 89.7 4.4 9.6E-05 43.8 12.1 86 31-119 227-328 (629)
70 KOG0161 Myosin class II heavy 89.7 4.1 8.8E-05 49.2 12.9 92 30-121 1696-1792(1930)
71 TIGR01843 type_I_hlyD type I s 89.6 20 0.00044 34.7 15.8 33 43-75 142-174 (423)
72 PF09726 Macoilin: Transmembra 89.4 2.7 5.8E-05 45.9 10.5 87 49-135 422-515 (697)
73 COG1196 Smc Chromosome segrega 89.3 5.3 0.00012 45.5 13.1 37 289-325 969-1005(1163)
74 PF13851 GAS: Growth-arrest sp 89.3 16 0.00035 33.9 14.2 82 40-121 43-127 (201)
75 PF11594 Med28: Mediator compl 89.2 3.1 6.7E-05 35.8 8.6 57 32-88 14-78 (106)
76 TIGR03752 conj_TIGR03752 integ 89.2 3.8 8.3E-05 43.0 11.0 63 53-115 67-130 (472)
77 PF12329 TMF_DNA_bd: TATA elem 89.2 1.8 4E-05 34.3 6.8 51 42-92 23-73 (74)
78 PF00038 Filament: Intermediat 89.2 17 0.00037 34.6 14.6 79 49-127 213-295 (312)
79 smart00787 Spc7 Spc7 kinetocho 89.0 8.6 0.00019 38.1 12.9 49 85-133 209-257 (312)
80 TIGR03007 pepcterm_ChnLen poly 88.6 5.2 0.00011 40.6 11.3 41 42-82 251-291 (498)
81 TIGR01843 type_I_hlyD type I s 88.5 16 0.00035 35.4 14.2 48 43-90 135-182 (423)
82 TIGR03017 EpsF chain length de 88.3 6 0.00013 39.4 11.4 93 42-134 258-368 (444)
83 PF05911 DUF869: Plant protein 88.3 5.3 0.00011 44.3 11.8 64 44-107 98-161 (769)
84 KOG0980 Actin-binding protein 88.2 12 0.00027 42.1 14.5 37 82-118 447-483 (980)
85 TIGR03185 DNA_S_dndD DNA sulfu 88.2 11 0.00024 40.2 13.9 75 16-90 171-254 (650)
86 TIGR02977 phageshock_pspA phag 88.2 10 0.00022 35.3 12.0 24 97-120 102-125 (219)
87 KOG4204 Histone deacetylase co 88.2 1.9 4.1E-05 41.0 7.4 65 271-336 17-83 (231)
88 KOG0288 WD40 repeat protein Ti 88.1 5.3 0.00012 41.6 11.0 69 46-114 35-103 (459)
89 TIGR03007 pepcterm_ChnLen poly 88.1 6.2 0.00013 40.1 11.5 91 45-135 275-382 (498)
90 PF11068 YlqD: YlqD protein; 88.1 4.3 9.4E-05 35.7 9.1 67 64-132 18-84 (131)
91 PF10473 CENP-F_leu_zip: Leuci 88.0 9.3 0.0002 34.1 11.2 73 43-118 64-136 (140)
92 PF07888 CALCOCO1: Calcium bin 87.9 9.2 0.0002 40.9 12.9 80 41-120 367-457 (546)
93 PF03962 Mnd1: Mnd1 family; I 87.9 4.1 8.8E-05 37.5 9.2 97 37-134 26-143 (188)
94 KOG0933 Structural maintenance 87.8 4 8.7E-05 46.5 10.5 86 43-128 841-926 (1174)
95 PF15070 GOLGA2L5: Putative go 87.7 6.9 0.00015 42.3 12.0 20 43-62 48-67 (617)
96 COG4942 Membrane-bound metallo 87.6 6 0.00013 41.1 11.0 70 45-114 38-107 (420)
97 KOG0161 Myosin class II heavy 87.5 6.4 0.00014 47.6 12.6 75 45-119 929-1003(1930)
98 PF04111 APG6: Autophagy prote 87.3 14 0.00031 36.4 13.1 83 44-126 42-124 (314)
99 COG5602 SIN3 Histone deacetyla 87.1 6.1 0.00013 44.7 11.3 61 277-338 273-335 (1163)
100 PF07888 CALCOCO1: Calcium bin 87.0 8.9 0.00019 41.0 12.2 46 76-121 209-257 (546)
101 COG1196 Smc Chromosome segrega 87.0 13 0.00029 42.4 14.4 32 98-129 450-481 (1163)
102 TIGR03752 conj_TIGR03752 integ 87.0 6.8 0.00015 41.2 11.1 76 43-118 64-140 (472)
103 KOG0249 LAR-interacting protei 87.0 5.5 0.00012 44.1 10.7 52 79-130 201-252 (916)
104 PF05700 BCAS2: Breast carcino 86.8 27 0.00059 32.6 14.3 87 32-121 123-209 (221)
105 PF15619 Lebercilin: Ciliary p 86.8 12 0.00026 34.8 11.6 81 41-121 57-145 (194)
106 PF09755 DUF2046: Uncharacteri 86.5 5.5 0.00012 39.8 9.8 69 41-129 225-293 (310)
107 KOG4010 Coiled-coil protein TP 86.4 3.4 7.5E-05 38.9 7.8 35 42-76 48-82 (208)
108 KOG2129 Uncharacterized conser 86.4 29 0.00063 36.6 15.1 77 40-136 248-327 (552)
109 PF13870 DUF4201: Domain of un 86.3 19 0.00042 32.0 12.4 84 48-131 45-128 (177)
110 PF12325 TMF_TATA_bd: TATA ele 86.3 18 0.00038 31.5 11.6 33 57-89 21-53 (120)
111 KOG4398 Predicted coiled-coil 86.2 4.5 9.8E-05 40.4 8.9 84 41-131 1-88 (359)
112 KOG0250 DNA repair protein RAD 86.1 7.2 0.00016 44.6 11.4 88 42-129 658-745 (1074)
113 PF09789 DUF2353: Uncharacteri 86.1 11 0.00023 37.9 11.6 42 78-119 138-179 (319)
114 PF13851 GAS: Growth-arrest sp 85.7 23 0.00049 32.9 12.9 83 46-128 63-148 (201)
115 PF02050 FliJ: Flagellar FliJ 85.4 16 0.00035 28.7 11.3 80 43-129 17-101 (123)
116 PF14662 CCDC155: Coiled-coil 85.4 12 0.00027 35.2 10.9 65 49-113 64-128 (193)
117 KOG1962 B-cell receptor-associ 85.4 3.8 8.3E-05 39.0 7.7 71 43-120 119-198 (216)
118 PF08647 BRE1: BRE1 E3 ubiquit 85.4 14 0.00031 30.4 10.2 68 52-119 3-70 (96)
119 PF09755 DUF2046: Uncharacteri 85.0 18 0.0004 36.3 12.5 94 39-132 78-202 (310)
120 PRK04863 mukB cell division pr 84.9 22 0.00048 42.2 15.0 78 41-118 317-400 (1486)
121 PF05667 DUF812: Protein of un 84.9 13 0.00029 40.0 12.4 83 49-131 325-410 (594)
122 TIGR03495 phage_LysB phage lys 84.7 9.3 0.0002 34.0 9.4 54 51-104 18-71 (135)
123 PF05278 PEARLI-4: Arabidopsis 84.6 15 0.00032 36.2 11.5 70 51-120 192-261 (269)
124 PF06005 DUF904: Protein of un 84.5 19 0.00041 28.7 10.3 20 94-113 46-65 (72)
125 PRK13169 DNA replication intia 84.5 5.5 0.00012 34.2 7.6 46 68-113 10-55 (110)
126 PF10146 zf-C4H2: Zinc finger- 84.5 13 0.00029 35.4 11.0 91 43-137 20-111 (230)
127 PF05266 DUF724: Protein of un 84.5 20 0.00043 33.2 11.9 73 49-121 107-179 (190)
128 PF04849 HAP1_N: HAP1 N-termin 84.4 17 0.00036 36.5 12.0 98 31-128 153-254 (306)
129 KOG1853 LIS1-interacting prote 84.1 11 0.00023 37.4 10.3 68 47-114 93-170 (333)
130 TIGR00606 rad50 rad50. This fa 84.1 23 0.00051 41.0 14.7 62 33-94 875-937 (1311)
131 KOG0963 Transcription factor/C 84.1 14 0.0003 40.2 12.0 72 55-126 281-352 (629)
132 PRK10803 tol-pal system protei 84.1 5.3 0.00011 38.3 8.2 65 42-120 37-101 (263)
133 PRK13729 conjugal transfer pil 83.9 4.7 0.0001 42.4 8.3 51 59-109 69-119 (475)
134 PF04100 Vps53_N: Vps53-like, 83.9 12 0.00027 37.8 11.1 25 107-131 84-108 (383)
135 TIGR01005 eps_transp_fam exopo 83.6 11 0.00024 40.5 11.3 30 107-136 375-404 (754)
136 PF14932 HAUS-augmin3: HAUS au 83.6 20 0.00043 34.3 11.8 45 45-89 68-112 (256)
137 KOG0288 WD40 repeat protein Ti 83.6 20 0.00043 37.6 12.4 46 88-133 56-101 (459)
138 PF15290 Syntaphilin: Golgi-lo 83.5 25 0.00055 35.1 12.6 37 27-63 61-100 (305)
139 PF11932 DUF3450: Protein of u 83.5 31 0.00066 32.5 12.9 8 279-286 228-235 (251)
140 PF05278 PEARLI-4: Arabidopsis 83.4 19 0.00041 35.5 11.7 85 22-114 169-262 (269)
141 PF10146 zf-C4H2: Zinc finger- 83.3 36 0.00079 32.5 13.4 65 55-123 4-68 (230)
142 PF07926 TPR_MLP1_2: TPR/MLP1/ 83.1 29 0.00063 29.8 12.6 81 46-126 4-84 (132)
143 PF09789 DUF2353: Uncharacteri 82.7 6.6 0.00014 39.4 8.5 76 44-121 78-153 (319)
144 PRK04863 mukB cell division pr 82.7 18 0.0004 42.9 13.3 82 45-126 348-429 (1486)
145 PF06818 Fez1: Fez1; InterPro 82.3 11 0.00024 35.7 9.3 71 51-121 30-100 (202)
146 PLN03188 kinesin-12 family pro 82.3 15 0.00033 42.9 12.0 82 41-129 1158-1254(1320)
147 PF07106 TBPIP: Tat binding pr 82.2 21 0.00044 31.6 10.7 19 71-89 114-132 (169)
148 PF15070 GOLGA2L5: Putative go 82.1 36 0.00079 36.9 14.3 93 31-123 15-116 (617)
149 KOG3433 Protein involved in me 81.9 11 0.00025 35.5 9.2 79 42-134 78-156 (203)
150 PF04201 TPD52: Tumour protein 81.9 16 0.00034 33.6 9.9 34 42-75 33-66 (162)
151 PF11740 KfrA_N: Plasmid repli 81.8 9.4 0.0002 31.4 7.9 64 13-83 56-119 (120)
152 PF05377 FlaC_arch: Flagella a 81.7 5 0.00011 30.8 5.6 35 77-118 4-38 (55)
153 KOG0977 Nuclear envelope prote 81.6 28 0.00061 37.4 13.1 91 44-134 147-254 (546)
154 KOG3650 Predicted coiled-coil 81.5 7 0.00015 33.7 7.0 50 62-115 56-105 (120)
155 COG3883 Uncharacterized protei 81.4 14 0.00031 36.2 10.0 61 61-121 33-93 (265)
156 PF10168 Nup88: Nuclear pore c 81.3 13 0.00028 40.8 10.8 24 87-110 600-623 (717)
157 cd07638 BAR_ACAP2 The Bin/Amph 81.1 16 0.00035 34.3 10.0 84 46-133 3-86 (200)
158 COG1842 PspA Phage shock prote 80.8 46 0.00099 31.7 13.0 42 26-78 23-64 (225)
159 PF06120 Phage_HK97_TLTM: Tail 80.7 33 0.00073 34.2 12.5 79 49-127 71-164 (301)
160 TIGR03017 EpsF chain length de 80.6 27 0.00059 34.8 12.0 37 54-90 256-299 (444)
161 PRK01156 chromosome segregatio 80.4 30 0.00065 38.0 13.2 45 76-120 677-721 (895)
162 PF04102 SlyX: SlyX; InterPro 80.3 11 0.00024 29.3 7.3 31 105-135 22-52 (69)
163 PF14197 Cep57_CLD_2: Centroso 80.1 13 0.00028 29.4 7.6 56 65-127 4-63 (69)
164 PF14817 HAUS5: HAUS augmin-li 80.0 31 0.00068 37.6 13.0 80 46-125 80-166 (632)
165 PF04728 LPP: Lipoprotein leuc 80.0 12 0.00027 28.8 7.3 45 45-89 3-47 (56)
166 KOG2685 Cystoskeletal protein 80.0 48 0.001 34.7 13.7 102 29-130 262-380 (421)
167 PF09486 HrpB7: Bacterial type 79.8 14 0.0003 33.7 8.8 49 43-91 84-132 (158)
168 KOG0249 LAR-interacting protei 79.7 11 0.00024 41.9 9.4 111 18-133 111-238 (916)
169 KOG4552 Vitamin-D-receptor int 79.6 11 0.00025 36.3 8.6 46 46-91 68-117 (272)
170 PF02601 Exonuc_VII_L: Exonucl 79.6 55 0.0012 31.5 13.4 57 28-84 148-209 (319)
171 PRK12705 hypothetical protein; 79.4 25 0.00054 37.3 11.8 15 121-135 141-155 (508)
172 PF02183 HALZ: Homeobox associ 79.4 7.7 0.00017 28.3 5.8 39 78-116 3-41 (45)
173 PF06103 DUF948: Bacterial pro 79.3 30 0.00065 27.5 12.8 84 38-121 5-88 (90)
174 PF06156 DUF972: Protein of un 78.9 14 0.00031 31.4 8.1 53 70-122 5-57 (107)
175 PF06810 Phage_GP20: Phage min 78.9 18 0.00039 32.4 9.2 49 42-90 17-68 (155)
176 PF04977 DivIC: Septum formati 78.7 9.6 0.00021 28.9 6.5 30 96-125 33-62 (80)
177 PF05266 DUF724: Protein of un 78.5 57 0.0012 30.3 12.9 104 15-118 54-169 (190)
178 PF14362 DUF4407: Domain of un 78.2 60 0.0013 31.1 13.2 20 115-134 218-237 (301)
179 PF10168 Nup88: Nuclear pore c 78.1 18 0.0004 39.7 10.7 41 40-80 560-600 (717)
180 PRK00888 ftsB cell division pr 78.0 9.7 0.00021 32.1 6.8 51 82-132 29-79 (105)
181 PRK02793 phi X174 lysis protei 78.0 13 0.00029 29.3 7.2 43 66-115 8-50 (72)
182 PF10779 XhlA: Haemolysin XhlA 77.8 12 0.00026 29.1 6.9 47 69-122 2-48 (71)
183 PF10226 DUF2216: Uncharacteri 77.8 45 0.00098 31.5 11.7 58 51-108 19-76 (195)
184 PF00170 bZIP_1: bZIP transcri 77.7 28 0.0006 26.2 9.3 37 63-99 23-59 (64)
185 PF09730 BicD: Microtubule-ass 77.7 38 0.00083 37.5 12.9 83 42-124 31-127 (717)
186 COG1777 Predicted transcriptio 77.6 18 0.00039 34.6 9.2 73 54-128 120-192 (217)
187 PF12128 DUF3584: Protein of u 77.6 38 0.00082 39.1 13.4 55 45-99 607-661 (1201)
188 smart00502 BBC B-Box C-termina 77.4 35 0.00075 27.2 13.7 48 49-96 4-51 (127)
189 PF13374 TPR_10: Tetratricopep 77.4 1.4 3E-05 28.6 1.3 39 288-326 4-42 (42)
190 PF15619 Lebercilin: Ciliary p 77.2 26 0.00056 32.6 10.0 21 69-89 121-141 (194)
191 TIGR02680 conserved hypothetic 77.2 32 0.00069 40.3 12.8 48 44-91 275-322 (1353)
192 PRK02119 hypothetical protein; 77.0 18 0.0004 28.7 7.8 29 105-133 27-55 (73)
193 KOG0980 Actin-binding protein 77.0 29 0.00062 39.4 11.7 54 63-116 463-516 (980)
194 PF10211 Ax_dynein_light: Axon 76.7 24 0.00052 32.4 9.6 62 62-123 123-185 (189)
195 KOG4673 Transcription factor T 76.7 25 0.00054 39.2 10.9 35 46-80 496-530 (961)
196 TIGR02680 conserved hypothetic 76.6 26 0.00057 41.0 12.0 38 44-81 741-778 (1353)
197 PF11471 Sugarporin_N: Maltopo 76.6 5.3 0.00011 30.9 4.5 29 70-98 29-57 (60)
198 PF01540 Lipoprotein_7: Adhesi 76.5 28 0.0006 34.9 10.4 64 68-131 106-173 (353)
199 COG5493 Uncharacterized conser 76.5 59 0.0013 31.3 12.2 96 15-121 2-101 (231)
200 PF10174 Cast: RIM-binding pro 76.5 35 0.00077 38.1 12.3 50 35-91 277-326 (775)
201 KOG0999 Microtubule-associated 76.3 27 0.00058 38.1 10.9 71 43-113 105-189 (772)
202 KOG0996 Structural maintenance 76.3 20 0.00044 41.7 10.6 43 23-65 772-819 (1293)
203 PF15456 Uds1: Up-regulated Du 76.2 36 0.00079 29.7 10.1 70 52-122 22-102 (124)
204 KOG0244 Kinesin-like protein [ 76.2 16 0.00034 41.4 9.5 97 41-137 512-608 (913)
205 cd00176 SPEC Spectrin repeats, 76.2 24 0.00053 29.8 8.9 42 41-82 75-116 (213)
206 PRK13169 DNA replication intia 76.1 18 0.0004 31.1 8.1 53 69-121 4-56 (110)
207 TIGR00606 rad50 rad50. This fa 76.1 36 0.00078 39.5 12.8 33 96-128 890-922 (1311)
208 PF04102 SlyX: SlyX; InterPro 75.8 15 0.00033 28.5 6.9 26 66-91 4-29 (69)
209 PF07106 TBPIP: Tat binding pr 75.8 19 0.00042 31.8 8.5 26 51-76 78-103 (169)
210 PF10805 DUF2730: Protein of u 75.8 33 0.00072 28.7 9.4 8 106-113 84-91 (106)
211 PF06548 Kinesin-related: Kine 75.7 21 0.00045 37.7 9.8 66 41-106 388-467 (488)
212 KOG0406 Glutathione S-transfer 75.7 11 0.00024 36.2 7.3 104 21-130 87-225 (231)
213 PRK04778 septation ring format 75.6 28 0.0006 36.8 10.9 61 47-107 350-410 (569)
214 PF10234 Cluap1: Clusterin-ass 75.5 37 0.0008 33.4 10.9 85 32-119 123-208 (267)
215 PRK02793 phi X174 lysis protei 75.5 19 0.00042 28.4 7.5 54 69-136 4-57 (72)
216 PF12325 TMF_TATA_bd: TATA ele 75.4 55 0.0012 28.5 13.4 54 69-129 64-117 (120)
217 PF10211 Ax_dynein_light: Axon 75.4 68 0.0015 29.5 14.3 39 68-106 122-160 (189)
218 PRK02119 hypothetical protein; 75.3 18 0.0004 28.7 7.3 46 64-116 7-52 (73)
219 TIGR00634 recN DNA repair prot 75.3 22 0.00048 37.3 10.1 40 94-133 346-390 (563)
220 KOG4674 Uncharacterized conser 75.2 33 0.00071 41.6 12.3 55 74-128 725-779 (1822)
221 PF14661 HAUS6_N: HAUS augmin- 75.2 53 0.0012 31.1 11.8 69 28-96 140-208 (247)
222 PF06476 DUF1090: Protein of u 75.0 28 0.00061 30.0 9.0 58 31-91 32-95 (115)
223 COG1340 Uncharacterized archae 75.0 26 0.00056 35.0 9.9 90 42-131 38-130 (294)
224 PRK15422 septal ring assembly 74.9 46 0.001 27.4 10.0 65 49-113 8-72 (79)
225 TIGR01554 major_cap_HK97 phage 74.9 19 0.0004 35.6 9.0 18 56-73 3-20 (378)
226 PRK10803 tol-pal system protei 74.9 23 0.00049 34.0 9.3 60 72-131 39-98 (263)
227 PF04582 Reo_sigmaC: Reovirus 74.6 6.4 0.00014 39.6 5.7 66 56-121 88-153 (326)
228 PRK04406 hypothetical protein; 74.6 28 0.0006 27.9 8.2 40 67-113 12-51 (75)
229 TIGR02559 HrpB7 type III secre 74.5 27 0.00059 32.0 9.1 51 41-91 82-132 (158)
230 PRK00295 hypothetical protein; 74.5 25 0.00054 27.5 7.8 22 68-89 7-28 (68)
231 COG3883 Uncharacterized protei 74.3 44 0.00095 32.9 11.1 68 47-114 33-100 (265)
232 PF10158 LOH1CR12: Tumour supp 74.2 44 0.00096 29.4 10.2 60 19-78 19-89 (131)
233 PF15035 Rootletin: Ciliary ro 74.1 41 0.0009 31.0 10.4 22 99-120 93-114 (182)
234 TIGR00634 recN DNA repair prot 73.9 13 0.00028 39.0 8.0 61 27-87 142-203 (563)
235 PRK10807 paraquat-inducible pr 73.7 60 0.0013 34.6 12.8 98 22-121 406-517 (547)
236 COG1322 Predicted nuclease of 73.4 97 0.0021 32.6 14.0 26 109-134 121-155 (448)
237 KOG1962 B-cell receptor-associ 73.2 24 0.00053 33.7 8.9 54 48-101 154-207 (216)
238 PF05377 FlaC_arch: Flagella a 73.2 12 0.00027 28.7 5.7 37 46-82 1-37 (55)
239 PRK00286 xseA exodeoxyribonucl 73.2 72 0.0016 32.3 12.8 32 30-61 267-298 (438)
240 PRK04325 hypothetical protein; 73.1 23 0.00051 28.1 7.5 40 68-114 11-50 (74)
241 PF05384 DegS: Sensor protein 73.0 65 0.0014 29.3 11.2 74 44-124 47-128 (159)
242 PRK10361 DNA recombination pro 72.8 1.4E+02 0.0029 31.9 15.4 30 289-318 379-408 (475)
243 PRK13922 rod shape-determining 72.8 77 0.0017 30.0 12.3 39 88-126 70-108 (276)
244 KOG0612 Rho-associated, coiled 72.7 40 0.00086 39.5 11.8 43 93-135 622-664 (1317)
245 TIGR02132 phaR_Bmeg polyhydrox 72.5 29 0.00063 32.6 8.9 70 42-111 76-152 (189)
246 smart00502 BBC B-Box C-termina 72.4 48 0.001 26.4 12.2 91 43-133 5-104 (127)
247 PF06005 DUF904: Protein of un 72.2 48 0.001 26.4 9.0 7 70-76 8-14 (72)
248 PF12128 DUF3584: Protein of u 72.2 1.3E+02 0.0028 34.9 15.9 94 43-136 440-539 (1201)
249 KOG0972 Huntingtin interacting 72.1 18 0.00038 36.7 7.9 62 43-104 264-325 (384)
250 PRK00409 recombination and DNA 72.0 70 0.0015 35.5 13.3 57 32-89 504-560 (782)
251 PF09787 Golgin_A5: Golgin sub 71.9 29 0.00062 36.3 9.9 23 42-64 113-135 (511)
252 COG2433 Uncharacterized conser 71.7 80 0.0017 34.7 13.2 86 42-131 419-508 (652)
253 smart00338 BRLZ basic region l 71.4 18 0.0004 27.2 6.3 29 63-91 23-51 (65)
254 PF10174 Cast: RIM-binding pro 71.3 81 0.0018 35.3 13.6 81 33-113 295-383 (775)
255 PF09730 BicD: Microtubule-ass 71.2 53 0.0012 36.5 12.0 18 303-320 614-631 (717)
256 KOG0962 DNA repair protein RAD 71.1 42 0.00092 39.5 11.6 69 41-118 1011-1079(1294)
257 TIGR01000 bacteriocin_acc bact 71.1 27 0.00059 35.5 9.3 7 74-80 244-250 (457)
258 PF09728 Taxilin: Myosin-like 70.9 1.1E+02 0.0025 30.2 13.3 57 71-127 249-305 (309)
259 PF12777 MT: Microtubule-bindi 70.8 24 0.00051 35.0 8.6 62 26-88 180-264 (344)
260 PF02050 FliJ: Flagellar FliJ 70.8 49 0.0011 25.9 10.6 70 50-121 3-72 (123)
261 PF05008 V-SNARE: Vesicle tran 70.7 32 0.00069 26.5 7.6 54 62-121 21-74 (79)
262 PF07321 YscO: Type III secret 70.7 81 0.0018 28.4 11.4 71 47-117 69-139 (152)
263 PF13094 CENP-Q: CENP-Q, a CEN 70.7 55 0.0012 28.7 10.1 73 47-133 22-94 (160)
264 PF06698 DUF1192: Protein of u 70.3 6.6 0.00014 30.5 3.7 27 43-69 26-52 (59)
265 COG3334 Uncharacterized conser 70.3 55 0.0012 30.9 10.3 86 22-116 44-134 (192)
266 PF13935 Ead_Ea22: Ead/Ea22-li 70.2 46 0.001 29.1 9.3 72 44-121 66-139 (139)
267 PRK00736 hypothetical protein; 69.9 33 0.00071 26.9 7.5 22 68-89 7-28 (68)
268 PRK12704 phosphodiesterase; Pr 69.9 90 0.0019 33.1 13.0 14 121-134 153-166 (520)
269 KOG0979 Structural maintenance 69.8 49 0.0011 38.1 11.5 79 41-126 625-703 (1072)
270 TIGR01010 BexC_CtrB_KpsE polys 69.8 14 0.00031 36.2 6.8 87 42-134 211-304 (362)
271 PRK15178 Vi polysaccharide exp 69.7 97 0.0021 32.5 13.0 52 39-90 280-338 (434)
272 cd07601 BAR_APPL The Bin/Amphi 69.7 48 0.001 31.5 10.0 86 45-134 2-91 (215)
273 TIGR00237 xseA exodeoxyribonuc 69.7 1E+02 0.0022 31.7 13.1 31 31-61 263-293 (432)
274 PF04899 MbeD_MobD: MbeD/MobD 69.5 56 0.0012 26.1 9.2 59 31-89 7-65 (70)
275 COG0419 SbcC ATPase involved i 69.4 45 0.00098 37.1 11.2 78 52-133 481-559 (908)
276 PRK00888 ftsB cell division pr 69.3 27 0.00058 29.4 7.4 35 46-80 28-62 (105)
277 KOG2991 Splicing regulator [RN 69.3 31 0.00068 34.3 8.8 74 38-111 229-309 (330)
278 PF01576 Myosin_tail_1: Myosin 69.1 1.6 3.4E-05 48.5 0.0 93 41-133 260-360 (859)
279 PF10046 BLOC1_2: Biogenesis o 69.0 65 0.0014 26.6 10.0 32 42-73 32-63 (99)
280 KOG4674 Uncharacterized conser 68.9 41 0.00088 40.9 11.1 69 43-114 803-871 (1822)
281 TIGR01000 bacteriocin_acc bact 68.8 73 0.0016 32.5 11.8 38 43-80 163-200 (457)
282 PF04977 DivIC: Septum formati 68.6 25 0.00055 26.6 6.6 33 46-78 18-50 (80)
283 PF04849 HAP1_N: HAP1 N-termin 68.5 55 0.0012 32.9 10.5 50 52-101 213-262 (306)
284 PF05781 MRVI1: MRVI1 protein; 68.4 1.1E+02 0.0024 33.0 13.3 102 28-129 196-324 (538)
285 COG3074 Uncharacterized protei 68.4 64 0.0014 26.3 9.7 50 64-113 23-72 (79)
286 KOG4673 Transcription factor T 68.3 50 0.0011 36.9 10.9 55 47-101 706-760 (961)
287 COG5570 Uncharacterized small 68.3 14 0.00031 28.5 5.0 48 66-113 5-52 (57)
288 PF12777 MT: Microtubule-bindi 68.2 46 0.00099 32.9 10.0 59 57-115 219-277 (344)
289 PF02388 FemAB: FemAB family; 67.9 31 0.00067 34.9 8.9 55 66-124 242-296 (406)
290 KOG4687 Uncharacterized coiled 67.9 23 0.0005 35.6 7.7 93 42-134 20-116 (389)
291 KOG0243 Kinesin-like protein [ 67.8 62 0.0013 37.4 11.9 20 70-89 480-499 (1041)
292 PF12761 End3: Actin cytoskele 67.7 76 0.0016 30.0 10.7 27 51-77 95-121 (195)
293 KOG0978 E3 ubiquitin ligase in 67.7 61 0.0013 35.9 11.5 83 42-127 535-617 (698)
294 KOG2417 Predicted G-protein co 67.6 19 0.00042 37.3 7.3 28 104-131 245-272 (462)
295 PF04888 SseC: Secretion syste 67.5 1.1E+02 0.0024 29.4 12.2 72 34-105 226-297 (306)
296 PF14932 HAUS-augmin3: HAUS au 67.4 1E+02 0.0023 29.4 11.9 24 71-94 101-124 (256)
297 PF14193 DUF4315: Domain of un 67.3 49 0.0011 27.2 8.3 61 46-129 2-62 (83)
298 PF06818 Fez1: Fez1; InterPro 67.1 66 0.0014 30.6 10.2 77 53-129 11-105 (202)
299 KOG0995 Centromere-associated 67.0 1.8E+02 0.004 31.7 14.6 80 17-96 404-483 (581)
300 KOG0239 Kinesin (KAR3 subfamil 67.0 94 0.002 34.2 12.8 71 65-135 240-313 (670)
301 COG4477 EzrA Negative regulato 67.0 64 0.0014 34.9 11.2 86 44-129 346-435 (570)
302 KOG1853 LIS1-interacting prote 67.0 75 0.0016 31.7 10.9 49 78-126 82-130 (333)
303 KOG4005 Transcription factor X 66.9 70 0.0015 31.6 10.6 79 44-131 58-145 (292)
304 COG1842 PspA Phage shock prote 66.7 71 0.0015 30.5 10.5 46 44-89 91-136 (225)
305 KOG0241 Kinesin-like protein [ 66.7 26 0.00057 40.5 8.6 55 33-87 346-407 (1714)
306 PRK12704 phosphodiesterase; Pr 66.4 1.8E+02 0.004 30.9 14.8 9 277-285 285-293 (520)
307 PF05529 Bap31: B-cell recepto 66.4 70 0.0015 28.8 10.0 25 44-68 117-141 (192)
308 KOG4593 Mitotic checkpoint pro 66.3 1.1E+02 0.0024 34.0 13.0 89 42-130 162-263 (716)
309 PF04859 DUF641: Plant protein 66.2 23 0.00049 31.4 6.6 44 48-91 76-119 (131)
310 PRK09841 cryptic autophosphory 66.0 67 0.0015 35.0 11.5 31 107-137 369-399 (726)
311 PF15254 CCDC14: Coiled-coil d 65.9 44 0.00094 37.6 10.0 73 41-115 385-476 (861)
312 PRK10698 phage shock protein P 65.9 55 0.0012 30.8 9.6 39 51-89 98-136 (222)
313 PRK09841 cryptic autophosphory 65.6 47 0.001 36.1 10.2 68 67-134 268-337 (726)
314 PF09304 Cortex-I_coil: Cortex 65.6 53 0.0011 28.4 8.5 53 42-94 55-107 (107)
315 PF14992 TMCO5: TMCO5 family 65.6 43 0.00093 33.3 9.0 60 69-128 87-171 (280)
316 PF08606 Prp19: Prp19/Pso4-lik 65.5 33 0.00072 27.6 6.8 46 68-113 24-69 (70)
317 KOG4687 Uncharacterized coiled 65.5 1E+02 0.0022 31.2 11.6 59 68-129 53-129 (389)
318 PRK00295 hypothetical protein; 65.4 34 0.00073 26.8 6.8 9 72-80 4-12 (68)
319 KOG4643 Uncharacterized coiled 65.3 50 0.0011 38.2 10.4 16 50-65 182-197 (1195)
320 TIGR03545 conserved hypothetic 65.2 43 0.00093 35.9 9.7 15 66-80 191-205 (555)
321 TIGR01069 mutS2 MutS2 family p 65.0 1.3E+02 0.0027 33.6 13.4 48 32-80 499-546 (771)
322 PF13863 DUF4200: Domain of un 64.8 81 0.0017 26.2 13.6 89 41-129 28-116 (126)
323 KOG1924 RhoA GTPase effector D 64.7 1.5E+02 0.0033 33.9 13.8 58 20-91 436-499 (1102)
324 COG2919 Septum formation initi 64.7 89 0.0019 26.6 10.8 40 91-130 61-100 (117)
325 TIGR02977 phageshock_pspA phag 64.6 1.2E+02 0.0026 28.1 12.4 53 33-90 85-137 (219)
326 PF05701 WEMBL: Weak chloropla 64.6 70 0.0015 33.7 11.0 73 45-117 309-381 (522)
327 PRK00106 hypothetical protein; 64.5 2.1E+02 0.0045 30.8 14.6 15 121-135 168-182 (535)
328 TIGR01005 eps_transp_fam exopo 64.5 63 0.0014 34.9 10.9 12 70-81 320-331 (754)
329 PF02994 Transposase_22: L1 tr 64.5 22 0.00047 35.9 7.0 80 43-122 103-186 (370)
330 KOG0612 Rho-associated, coiled 64.3 86 0.0019 37.0 12.2 41 271-317 616-656 (1317)
331 PRK00736 hypothetical protein; 64.3 35 0.00075 26.7 6.7 6 74-79 6-11 (68)
332 COG5602 SIN3 Histone deacetyla 64.2 71 0.0015 36.7 11.2 62 275-337 130-193 (1163)
333 PF02841 GBP_C: Guanylate-bind 64.2 79 0.0017 30.5 10.6 62 50-114 188-249 (297)
334 KOG0964 Structural maintenance 64.2 67 0.0015 37.2 11.1 71 44-114 410-480 (1200)
335 PRK04406 hypothetical protein; 64.1 45 0.00099 26.7 7.4 54 68-135 6-59 (75)
336 TIGR02231 conserved hypothetic 64.1 1E+02 0.0022 32.1 11.9 27 54-80 73-99 (525)
337 PRK04325 hypothetical protein; 64.1 53 0.0011 26.1 7.8 53 69-135 5-57 (74)
338 KOG1003 Actin filament-coating 63.9 1.4E+02 0.003 28.6 12.9 102 32-137 44-159 (205)
339 PF11418 Scaffolding_pro: Phi2 63.8 57 0.0012 27.6 8.1 49 62-117 22-70 (97)
340 PRK04778 septation ring format 63.7 69 0.0015 33.9 10.8 33 84-116 380-412 (569)
341 PHA00489 scaffolding protein 63.7 28 0.00061 29.5 6.3 49 62-117 23-71 (101)
342 PF04582 Reo_sigmaC: Reovirus 63.7 2.3 5E-05 42.7 0.0 56 76-131 94-149 (326)
343 PF04576 Zein-binding: Zein-bi 63.6 92 0.002 26.4 10.3 72 55-129 2-81 (94)
344 PF09738 DUF2051: Double stran 63.5 1.1E+02 0.0024 30.5 11.5 75 43-117 117-242 (302)
345 PF02994 Transposase_22: L1 tr 63.4 24 0.00052 35.6 7.1 50 42-91 141-190 (370)
346 PF12072 DUF3552: Domain of un 63.4 1.2E+02 0.0027 27.8 11.5 88 47-134 73-162 (201)
347 PF11802 CENP-K: Centromere-as 63.4 1.6E+02 0.0035 29.2 13.1 25 110-134 156-180 (268)
348 PF05622 HOOK: HOOK protein; 63.3 2.4 5.1E-05 45.8 0.0 91 45-136 239-342 (713)
349 PF09403 FadA: Adhesion protei 63.2 1.1E+02 0.0023 27.0 13.2 53 41-93 23-79 (126)
350 PF04201 TPD52: Tumour protein 63.1 32 0.0007 31.6 7.2 42 49-90 26-67 (162)
351 PF10475 DUF2450: Protein of u 63.1 1.5E+02 0.0032 28.6 13.5 94 13-113 12-121 (291)
352 PF05529 Bap31: B-cell recepto 63.1 66 0.0014 29.0 9.2 26 42-67 122-147 (192)
353 PF14662 CCDC155: Coiled-coil 63.1 1.4E+02 0.003 28.3 13.1 84 49-136 19-112 (193)
354 PF10498 IFT57: Intra-flagella 63.0 1.1E+02 0.0024 31.0 11.7 71 46-126 242-316 (359)
355 PF13805 Pil1: Eisosome compon 63.0 68 0.0015 31.7 9.8 59 43-101 101-159 (271)
356 PF14282 FlxA: FlxA-like prote 62.6 44 0.00096 28.0 7.5 64 65-131 18-81 (106)
357 PF04012 PspA_IM30: PspA/IM30 62.5 1.2E+02 0.0027 27.6 12.1 96 17-120 24-124 (221)
358 PF12240 Angiomotin_C: Angiomo 62.5 12 0.00027 35.4 4.6 30 45-74 136-165 (205)
359 PF03961 DUF342: Protein of un 62.1 58 0.0013 33.3 9.6 29 105-133 379-407 (451)
360 PF07200 Mod_r: Modifier of ru 61.8 1E+02 0.0023 26.5 11.3 91 39-130 42-136 (150)
361 PF03938 OmpH: Outer membrane 61.7 63 0.0014 27.7 8.5 46 32-77 22-68 (158)
362 COG3524 KpsE Capsule polysacch 61.7 28 0.0006 35.4 7.0 92 27-128 213-324 (372)
363 PRK06975 bifunctional uroporph 61.6 1.1E+02 0.0024 33.2 12.1 88 46-136 347-439 (656)
364 KOG0517 Beta-spectrin [Cytoske 61.3 1.2E+02 0.0025 37.7 12.7 101 34-137 939-1052(2473)
365 COG5374 Uncharacterized conser 61.1 26 0.00057 33.0 6.4 37 48-84 139-175 (192)
366 PF14915 CCDC144C: CCDC144C pr 61.0 1.5E+02 0.0033 29.9 11.9 83 40-122 216-299 (305)
367 KOG2896 UV radiation resistanc 60.7 2.1E+02 0.0046 29.7 13.1 28 45-72 80-107 (377)
368 PRK11415 hypothetical protein; 60.5 34 0.00073 27.2 6.1 61 55-115 6-67 (74)
369 PF14817 HAUS5: HAUS augmin-li 60.4 1.5E+02 0.0033 32.5 12.8 72 56-127 83-154 (632)
370 PF09177 Syntaxin-6_N: Syntaxi 60.4 91 0.002 25.3 10.0 59 62-120 35-96 (97)
371 PRK00846 hypothetical protein; 60.2 65 0.0014 26.2 7.7 26 66-91 13-38 (77)
372 PF08232 Striatin: Striatin fa 60.0 29 0.00063 30.4 6.2 41 43-90 30-70 (134)
373 PF05859 Mis12: Mis12 protein; 59.9 7.9 0.00017 33.8 2.7 56 13-73 86-143 (144)
374 PF15188 CCDC-167: Coiled-coil 59.9 38 0.00082 28.1 6.4 54 67-120 6-62 (85)
375 TIGR03319 YmdA_YtgF conserved 59.6 1.1E+02 0.0023 32.5 11.3 14 121-134 147-160 (514)
376 PF14193 DUF4315: Domain of un 59.6 26 0.00056 28.8 5.4 13 286-298 47-59 (83)
377 KOG4643 Uncharacterized coiled 59.4 66 0.0014 37.3 10.1 39 68-106 417-455 (1195)
378 PRK10869 recombination and rep 59.3 52 0.0011 34.9 9.0 57 26-82 137-194 (553)
379 PRK09737 EcoKI restriction-mod 59.2 21 0.00045 35.1 5.7 39 93-131 372-414 (461)
380 PF10205 KLRAQ: Predicted coil 59.0 48 0.001 28.4 7.1 37 55-91 29-65 (102)
381 KOG1899 LAR transmembrane tyro 59.0 3E+02 0.0065 30.9 17.0 88 42-129 228-319 (861)
382 PF05622 HOOK: HOOK protein; 59.0 3.1 6.8E-05 44.8 0.0 52 71-122 361-412 (713)
383 KOG2629 Peroxisomal membrane a 59.0 92 0.002 31.3 10.0 64 49-122 119-182 (300)
384 PF11221 Med21: Subunit 21 of 58.8 94 0.002 27.2 9.2 80 28-118 63-142 (144)
385 PF08898 DUF1843: Domain of un 58.7 20 0.00043 27.5 4.2 27 96-122 26-52 (53)
386 PF10226 DUF2216: Uncharacteri 58.6 27 0.00059 33.0 6.0 54 83-137 19-73 (195)
387 KOG3119 Basic region leucine z 58.4 46 0.00099 32.3 7.8 95 37-131 164-259 (269)
388 PF00523 Fusion_gly: Fusion gl 58.4 1.1E+02 0.0023 32.7 11.0 73 35-120 105-177 (490)
389 PF09798 LCD1: DNA damage chec 58.2 46 0.00099 36.6 8.5 31 277-307 176-211 (654)
390 PF12998 ING: Inhibitor of gro 58.2 72 0.0016 25.4 7.8 65 46-110 9-87 (105)
391 PF11544 Spc42p: Spindle pole 58.2 1E+02 0.0022 25.2 9.1 52 50-108 3-54 (76)
392 PF07989 Microtub_assoc: Micro 58.1 96 0.0021 24.8 8.6 55 67-121 15-70 (75)
393 COG1570 XseA Exonuclease VII, 57.7 2.4E+02 0.0051 29.9 13.2 71 12-82 236-322 (440)
394 PF08826 DMPK_coil: DMPK coile 57.7 89 0.0019 24.3 8.8 55 48-106 4-58 (61)
395 PF05769 DUF837: Protein of un 57.5 1.6E+02 0.0034 27.2 12.5 83 48-130 6-107 (181)
396 PF10481 CENP-F_N: Cenp-F N-te 57.4 84 0.0018 31.5 9.4 67 45-118 18-91 (307)
397 PRK11091 aerobic respiration c 57.1 2.7E+02 0.0059 29.8 14.3 44 55-98 81-124 (779)
398 PF13747 DUF4164: Domain of un 57.1 1.1E+02 0.0024 25.2 10.1 43 69-111 42-84 (89)
399 TIGR02971 heterocyst_DevB ABC 57.1 1.8E+02 0.0039 27.7 11.8 20 19-38 42-63 (327)
400 PF09744 Jnk-SapK_ap_N: JNK_SA 57.1 1.5E+02 0.0033 26.9 12.0 73 46-121 51-123 (158)
401 PF13166 AAA_13: AAA domain 57.0 2E+02 0.0043 30.6 12.9 15 326-340 671-685 (712)
402 TIGR02499 HrpE_YscL_not type I 57.0 1.3E+02 0.0027 25.9 11.5 66 22-96 2-67 (166)
403 PF07794 DUF1633: Protein of u 56.8 1.2E+02 0.0026 33.0 11.0 93 39-131 591-704 (790)
404 PF03961 DUF342: Protein of un 56.7 65 0.0014 32.9 9.0 33 95-127 376-408 (451)
405 PRK11448 hsdR type I restricti 56.5 87 0.0019 36.4 10.7 34 50-83 147-180 (1123)
406 TIGR03319 YmdA_YtgF conserved 56.5 2.7E+02 0.0059 29.6 14.8 8 278-285 280-287 (514)
407 cd07604 BAR_ASAPs The Bin/Amph 56.5 94 0.002 29.3 9.3 84 46-133 3-88 (215)
408 PF04871 Uso1_p115_C: Uso1 / p 56.5 1.4E+02 0.003 26.2 10.2 14 119-133 99-112 (136)
409 KOG0982 Centrosomal protein Nu 56.4 1.1E+02 0.0024 32.4 10.5 14 288-301 447-460 (502)
410 TIGR00020 prfB peptide chain r 56.3 1.4E+02 0.0031 30.5 11.2 88 33-121 11-112 (364)
411 PF09728 Taxilin: Myosin-like 56.1 1.1E+02 0.0024 30.3 10.1 43 42-84 26-68 (309)
412 PF04859 DUF641: Plant protein 55.9 33 0.00071 30.4 5.8 30 49-78 91-120 (131)
413 PF09787 Golgin_A5: Golgin sub 55.9 30 0.00066 36.2 6.5 72 39-117 356-429 (511)
414 KOG0933 Structural maintenance 55.7 80 0.0017 36.6 10.0 66 51-116 398-463 (1174)
415 PRK15178 Vi polysaccharide exp 55.7 2.5E+02 0.0055 29.5 13.0 63 75-137 244-315 (434)
416 KOG4360 Uncharacterized coiled 55.7 93 0.002 33.7 9.9 80 38-117 159-242 (596)
417 PRK11519 tyrosine kinase; Prov 55.6 96 0.0021 33.8 10.4 26 49-74 271-296 (719)
418 KOG4360 Uncharacterized coiled 55.6 2.2E+02 0.0048 31.0 12.7 72 47-118 228-299 (596)
419 cd07603 BAR_ACAPs The Bin/Amph 55.5 1.2E+02 0.0026 28.2 9.7 82 46-131 3-84 (200)
420 PF07246 Phlebovirus_NSM: Phle 55.4 82 0.0018 31.1 8.9 31 58-88 160-190 (264)
421 PRK09174 F0F1 ATP synthase sub 55.4 1.8E+02 0.0039 27.1 12.1 118 16-134 44-172 (204)
422 smart00503 SynN Syntaxin N-ter 55.4 1.1E+02 0.0023 24.6 10.9 21 43-63 6-26 (117)
423 KOG0243 Kinesin-like protein [ 55.1 1.8E+02 0.004 33.8 12.7 29 81-109 484-512 (1041)
424 PRK06569 F0F1 ATP synthase sub 55.0 1.5E+02 0.0033 26.9 10.0 48 48-95 37-84 (155)
425 COG3879 Uncharacterized protei 54.8 62 0.0013 31.6 8.0 8 119-126 97-104 (247)
426 KOG0996 Structural maintenance 54.7 1.1E+02 0.0024 36.1 10.9 71 46-116 779-849 (1293)
427 PF07111 HCR: Alpha helical co 54.7 2.7E+02 0.006 31.2 13.5 89 32-120 156-261 (739)
428 PF13815 Dzip-like_N: Iguana/D 54.6 46 0.00099 28.2 6.3 33 84-116 84-116 (118)
429 KOG2781 U3 small nucleolar rib 54.5 25 0.00055 34.7 5.3 47 57-105 2-48 (290)
430 PF05010 TACC: Transforming ac 54.3 1.8E+02 0.0039 27.6 10.7 68 50-117 21-92 (207)
431 PF10944 DUF2630: Protein of u 54.2 32 0.0007 28.4 5.1 51 41-91 4-54 (81)
432 PF12240 Angiomotin_C: Angiomo 54.2 2.1E+02 0.0045 27.5 12.0 83 54-136 59-171 (205)
433 TIGR01010 BexC_CtrB_KpsE polys 54.2 2.2E+02 0.0049 27.9 13.7 69 65-133 169-239 (362)
434 PF05667 DUF812: Protein of un 54.1 1.8E+02 0.0039 31.7 12.0 40 43-82 340-379 (594)
435 PRK13729 conjugal transfer pil 53.9 43 0.00093 35.5 7.2 49 66-128 69-117 (475)
436 KOG0976 Rho/Rac1-interacting s 53.6 1.3E+02 0.0028 34.6 10.9 85 43-127 268-356 (1265)
437 KOG0614 cGMP-dependent protein 53.3 42 0.0009 36.7 7.1 45 39-83 18-62 (732)
438 PF14362 DUF4407: Domain of un 53.1 2.1E+02 0.0047 27.4 14.4 28 53-80 136-163 (301)
439 PRK15396 murein lipoprotein; P 53.1 71 0.0015 26.0 6.9 44 46-89 26-69 (78)
440 PF01576 Myosin_tail_1: Myosin 53.0 4.5 9.8E-05 45.0 0.0 81 47-127 182-262 (859)
441 PF00769 ERM: Ezrin/radixin/mo 52.8 1.4E+02 0.0031 28.5 10.1 66 65-130 46-111 (246)
442 PF05761 5_nucleotid: 5' nucle 52.7 57 0.0012 34.1 7.9 38 47-85 324-361 (448)
443 PF10498 IFT57: Intra-flagella 52.7 1.9E+02 0.0042 29.4 11.4 63 42-104 256-318 (359)
444 PF11365 DUF3166: Protein of u 52.5 48 0.001 28.1 6.0 65 51-115 14-90 (96)
445 PF13747 DUF4164: Domain of un 52.4 1.3E+02 0.0028 24.7 11.0 40 69-108 35-74 (89)
446 KOG4421 Uncharacterized conser 52.4 59 0.0013 34.2 7.7 72 46-117 16-87 (637)
447 PRK11519 tyrosine kinase; Prov 52.3 1.2E+02 0.0026 33.0 10.5 29 108-136 370-398 (719)
448 PRK00846 hypothetical protein; 52.1 1.3E+02 0.0028 24.5 8.7 53 70-136 10-62 (77)
449 PRK00106 hypothetical protein; 52.1 1.7E+02 0.0037 31.5 11.3 10 277-286 300-309 (535)
450 PF04508 Pox_A_type_inc: Viral 51.9 18 0.0004 23.4 2.6 20 67-86 2-21 (23)
451 PF10359 Fmp27_WPPW: RNA pol I 51.8 75 0.0016 33.1 8.6 69 68-136 165-235 (475)
452 KOG1144 Translation initiation 51.7 82 0.0018 35.9 9.1 64 64-131 240-305 (1064)
453 PRK13411 molecular chaperone D 51.6 1.2E+02 0.0025 32.9 10.2 58 51-108 504-569 (653)
454 PF07798 DUF1640: Protein of u 51.6 1.8E+02 0.004 26.1 13.0 40 52-91 58-98 (177)
455 PF06008 Laminin_I: Laminin Do 51.5 2.2E+02 0.0047 27.0 11.3 78 45-122 17-101 (264)
456 PRK10636 putative ABC transpor 51.4 1.2E+02 0.0026 32.5 10.2 56 66-121 563-625 (638)
457 PF05700 BCAS2: Breast carcino 51.4 79 0.0017 29.5 7.9 80 35-121 133-216 (221)
458 KOG0946 ER-Golgi vesicle-tethe 51.4 1.6E+02 0.0035 33.7 11.2 29 300-328 931-960 (970)
459 PF03357 Snf7: Snf7; InterPro 51.1 1.6E+02 0.0034 25.2 9.4 21 41-61 11-31 (171)
460 cd07639 BAR_ACAP1 The Bin/Amph 51.1 1.3E+02 0.0027 28.4 9.2 84 46-133 3-86 (200)
461 PF05531 NPV_P10: Nucleopolyhe 50.9 52 0.0011 26.8 5.7 49 42-94 15-63 (75)
462 PF07989 Microtub_assoc: Micro 50.9 1.3E+02 0.0028 24.1 8.7 23 95-117 51-73 (75)
463 PF13514 AAA_27: AAA domain 50.8 2.2E+02 0.0047 32.7 12.6 35 97-131 936-970 (1111)
464 PF14915 CCDC144C: CCDC144C pr 50.8 2.4E+02 0.0051 28.6 11.4 78 43-120 61-142 (305)
465 PF10212 TTKRSYEDQ: Predicted 50.8 2.8E+02 0.0061 30.0 12.6 64 39-102 414-477 (518)
466 PF07926 TPR_MLP1_2: TPR/MLP1/ 50.4 1.6E+02 0.0035 25.2 12.5 31 45-75 17-47 (132)
467 cd07637 BAR_ACAP3 The Bin/Amph 50.4 1.8E+02 0.004 27.1 10.1 79 46-128 3-81 (200)
468 COG5185 HEC1 Protein involved 50.3 81 0.0018 33.9 8.5 76 46-124 474-549 (622)
469 PF07889 DUF1664: Protein of u 50.2 1.8E+02 0.0039 25.6 12.2 53 70-122 65-117 (126)
470 COG4717 Uncharacterized conser 50.2 1.8E+02 0.004 33.4 11.5 75 14-96 527-601 (984)
471 PRK06975 bifunctional uroporph 50.1 1.2E+02 0.0027 32.8 10.2 49 43-91 355-403 (656)
472 PF13874 Nup54: Nucleoporin co 49.9 1.3E+02 0.0027 26.3 8.5 34 41-74 33-66 (141)
473 PRK00409 recombination and DNA 49.6 1.4E+02 0.0031 33.1 10.7 63 71-133 532-595 (782)
474 PRK13410 molecular chaperone D 49.6 1.5E+02 0.0032 32.3 10.6 41 51-91 504-547 (668)
475 PRK00578 prfB peptide chain re 49.6 2.8E+02 0.0061 28.5 12.0 92 34-128 12-117 (367)
476 PTZ00421 coronin; Provisional 49.5 24 0.00052 36.8 4.6 36 41-76 456-491 (493)
477 PF02403 Seryl_tRNA_N: Seryl-t 49.4 1.4E+02 0.0031 24.2 8.8 24 99-122 72-95 (108)
478 PLN02678 seryl-tRNA synthetase 49.4 1.3E+02 0.0028 31.5 9.9 40 94-133 71-110 (448)
479 KOG0614 cGMP-dependent protein 49.4 55 0.0012 35.8 7.2 54 69-122 20-73 (732)
480 PF13514 AAA_27: AAA domain 48.9 4E+02 0.0087 30.6 14.3 24 309-332 978-1005(1111)
481 PF06160 EzrA: Septation ring 48.8 1.6E+02 0.0034 31.4 10.5 59 43-101 349-407 (560)
482 COG2900 SlyX Uncharacterized p 48.8 1.3E+02 0.0028 24.4 7.6 50 65-114 7-56 (72)
483 PF05308 Mito_fiss_reg: Mitoch 48.7 17 0.00036 35.3 3.1 25 38-62 115-139 (253)
484 PRK14143 heat shock protein Gr 48.7 1.4E+02 0.003 28.8 9.3 66 62-127 63-134 (238)
485 KOG0971 Microtubule-associated 48.5 1.4E+02 0.003 34.6 10.3 17 306-322 688-704 (1243)
486 PF04100 Vps53_N: Vps53-like, 48.4 3.1E+02 0.0068 27.9 12.9 100 12-115 2-113 (383)
487 PF02388 FemAB: FemAB family; 48.4 77 0.0017 32.1 7.9 45 43-87 247-294 (406)
488 PF05557 MAD: Mitotic checkpoi 48.2 19 0.00041 39.0 3.8 75 46-120 462-536 (722)
489 COG4372 Uncharacterized protei 48.1 3.7E+02 0.0079 28.6 14.2 43 72-114 136-178 (499)
490 PF09731 Mitofilin: Mitochondr 48.1 3.5E+02 0.0076 28.4 14.5 95 29-123 286-393 (582)
491 PF06637 PV-1: PV-1 protein (P 48.1 2.1E+02 0.0045 30.1 10.8 75 48-122 281-370 (442)
492 KOG0978 E3 ubiquitin ligase in 48.1 4.4E+02 0.0096 29.5 15.0 115 16-130 378-518 (698)
493 PF05103 DivIVA: DivIVA protei 47.9 20 0.00044 29.8 3.1 48 84-131 22-69 (131)
494 TIGR00998 8a0101 efflux pump m 47.7 1.6E+02 0.0035 27.9 9.6 65 48-112 76-140 (334)
495 KOG0976 Rho/Rac1-interacting s 47.7 1.7E+02 0.0036 33.7 10.6 76 47-122 325-400 (1265)
496 PF11180 DUF2968: Protein of u 47.7 2.5E+02 0.0055 26.6 11.9 77 44-120 97-173 (192)
497 PF05557 MAD: Mitotic checkpoi 47.5 17 0.00038 39.3 3.4 75 47-121 456-530 (722)
498 PF06008 Laminin_I: Laminin Do 47.5 2.5E+02 0.0054 26.6 10.7 73 55-127 123-201 (264)
499 PF14523 Syntaxin_2: Syntaxin- 47.5 1.4E+02 0.0031 23.7 8.6 73 43-120 8-83 (102)
500 PF09302 XLF: XLF (XRCC4-like 47.4 24 0.00051 31.1 3.6 35 43-77 137-171 (171)
No 1
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=97.06 E-value=0.0019 Score=46.09 Aligned_cols=46 Identities=22% Similarity=0.420 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHhhCCCChhHHHHHHHhh
Q 019459 289 YEQFSAFLASIKELNAQKQTREETLRKAEEIFGTDNKDLYLYFQGLL 335 (340)
Q Consensus 289 YEQFsaFLANIKELNAhkQTREETL~KA~eIFG~eNkDLY~~FegLL 335 (340)
.|.|.+||..++.++.++.+++|...++.++|+. |+||...|...|
T Consensus 1 p~~Y~~FL~il~~y~~~~~~~~~v~~~v~~Ll~~-hpdLl~~F~~Fl 46 (47)
T PF02671_consen 1 PEVYNEFLKILNDYKKGRISRSEVIEEVSELLRG-HPDLLEEFNRFL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHCTCSCHHHHHHHHHHHTTT--HHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc-CHHHHHHHHhhC
Confidence 3789999999999999999999999999999985 889999998764
No 2
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=97.05 E-value=0.0074 Score=61.23 Aligned_cols=72 Identities=26% Similarity=0.353 Sum_probs=46.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHhHHHHHHHHHHHHHH
Q 019459 49 KLETETGTMRQMLYEKDRLICELEERLSHVQKVYQ----------------------EADSKLKIFIDDNAKLAKERDSL 106 (340)
Q Consensus 49 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~----------------------e~~~rl~~a~de~~kL~~E~~sL 106 (340)
+.|.=++.||..+.+..++..+||.+-..+|..|+ |..-.-..|++|++.|.||||+|
T Consensus 282 Kveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L 361 (442)
T PF06637_consen 282 KVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSL 361 (442)
T ss_pred HHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555554444432 22223346899999999999999
Q ss_pred HHHHHHHhhhHHHH
Q 019459 107 AMTARNLSRDLAKL 120 (340)
Q Consensus 107 a~TvKKL~RDvaKL 120 (340)
+..+-...|.++.|
T Consensus 362 ~keLeekkreleql 375 (442)
T PF06637_consen 362 AKELEEKKRELEQL 375 (442)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888888763
No 3
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.65 E-value=0.026 Score=52.68 Aligned_cols=68 Identities=21% Similarity=0.269 Sum_probs=40.3
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNL 113 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL 113 (340)
...|+-+||.|+..|+++|++-+.. +..+...++..+.+++.......++|.+|.+|...+.+.+..|
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~---~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNT---WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999886533 3445555555555544444444444444444444444443333
No 4
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.57 E-value=0.045 Score=49.72 Aligned_cols=79 Identities=15% Similarity=0.231 Sum_probs=48.0
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHhhhHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMT-ARNLSRDLAKL 120 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~T-vKKL~RDvaKL 120 (340)
+...++..|+.++..|+.++.+.+..|.++++-+..|..+|+-.+..++.+++...+|.+||+.|+.- +++-++|..+|
T Consensus 113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eAe~m 192 (194)
T PF08614_consen 113 EKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQEAERM 192 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666666666666666666666666666666666666666666666677777776543 34444444443
No 5
>PRK11637 AmiB activator; Provisional
Probab=96.51 E-value=0.039 Score=55.36 Aligned_cols=87 Identities=14% Similarity=0.189 Sum_probs=52.5
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019459 47 VSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQ 126 (340)
Q Consensus 47 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~ 126 (340)
...++.++..+.+++.+....+.++++++..++.+|..+..++.....+..++.+|-+.|...++.+..++++++.--+.
T Consensus 49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444455555556666666666666666666666777777777777777777777776665555
Q ss_pred HHhhccc
Q 019459 127 LMQSLND 133 (340)
Q Consensus 127 LmqSLqe 133 (340)
+|..+..
T Consensus 129 rlra~Y~ 135 (428)
T PRK11637 129 QLDAAFR 135 (428)
T ss_pred HHHHHHH
Confidence 6665544
No 6
>PRK11637 AmiB activator; Provisional
Probab=96.17 E-value=0.11 Score=52.31 Aligned_cols=71 Identities=8% Similarity=0.128 Sum_probs=31.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019459 49 KLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAK 119 (340)
Q Consensus 49 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaK 119 (340)
.++.++..+++++.+....|.+++.++..++.+|...+.+|..+.++...+.++-+.+-..+.+|+.++++
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~ 114 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAK 114 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444433
No 7
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=95.90 E-value=0.16 Score=44.03 Aligned_cols=72 Identities=24% Similarity=0.368 Sum_probs=41.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHhhhHHHH
Q 019459 49 KLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAK----ERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 49 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~----E~~sLa~TvKKL~RDvaKL 120 (340)
.|+..+.+|+.+++++++.+..++.+...++..+......++...||..||.. =+.....-+||-.+++.||
T Consensus 70 ~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kL 145 (151)
T PF11559_consen 70 RLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKL 145 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666666666666666666666666666666555432 2333444455555555554
No 8
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.82 E-value=0.21 Score=44.01 Aligned_cols=95 Identities=17% Similarity=0.246 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHH
Q 019459 37 KITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFI---DDNAKLAKERDSLAMTARNL 113 (340)
Q Consensus 37 kIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~---de~~kL~~E~~sLa~TvKKL 113 (340)
|+=.-+...|+..+|+.+..|-+...+++..|..|+.|+..||..|..+..+|..+. ++..+....+.+|---|.-|
T Consensus 6 k~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~L 85 (143)
T PF12718_consen 6 KLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLL 85 (143)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHH
Confidence 444456778999999999999999999999999999999999999999888886654 33344444444444444444
Q ss_pred hhhHHHHHHHHHHHHhhc
Q 019459 114 SRDLAKLETFKRQLMQSL 131 (340)
Q Consensus 114 ~RDvaKLE~FKk~LmqSL 131 (340)
-.+|...+.==+.....|
T Consensus 86 Eeele~ae~~L~e~~ekl 103 (143)
T PF12718_consen 86 EEELEEAEKKLKETTEKL 103 (143)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444433333333333
No 9
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.68 E-value=0.33 Score=43.16 Aligned_cols=91 Identities=15% Similarity=0.152 Sum_probs=71.7
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
-+.-+|-+||+|.......+..=-....--++-+..|+..+...+..++....|-..|.+||..|.....+.+.-|.-||
T Consensus 21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888887766655444444444566677788888888888988888999999999999999999999999999
Q ss_pred HHHHHHHhhcc
Q 019459 122 TFKRQLMQSLN 132 (340)
Q Consensus 122 ~FKk~LmqSLq 132 (340)
...-.+-.-|+
T Consensus 101 ~~~~~~~~~l~ 111 (140)
T PF10473_consen 101 SLNSSLENLLQ 111 (140)
T ss_pred HHhHHHHHHHH
Confidence 98776655554
No 10
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=95.64 E-value=0.18 Score=40.08 Aligned_cols=63 Identities=27% Similarity=0.359 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 56 TMRQMLYEKDRLICELEERLSHV---QKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 56 ~LR~~laEKd~~i~~Lq~r~~~l---e~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
.|-..|+|||..|++|++....| +..+..+--+|+....+ +.++.+.|...+.++..++..|+
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e---~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKE---LEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999655544 44444444444443333 33444444444444444444443
No 11
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.36 E-value=0.2 Score=45.55 Aligned_cols=89 Identities=27% Similarity=0.386 Sum_probs=51.9
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
++.||..+..++..|+.++.++...|.+|+..+..|+..+.+....|.--...++.|..|-.+|-.+..-|..-+.+|+.
T Consensus 93 l~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 93 LAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888999999999988888888888888888888777777777777777777777777777777777777776
Q ss_pred HHHHHHhhc
Q 019459 123 FKRQLMQSL 131 (340)
Q Consensus 123 FKk~LmqSL 131 (340)
=-+.|++-+
T Consensus 173 En~~Lv~Rw 181 (194)
T PF08614_consen 173 ENRELVERW 181 (194)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
No 12
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=95.34 E-value=0.45 Score=44.13 Aligned_cols=92 Identities=18% Similarity=0.268 Sum_probs=64.0
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHH--
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAK-- 119 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaK-- 119 (340)
.....+..++..+..||..+.+....|.++++++..+..+|..-...|....+...++.+....+.+.++.+.+.+.+
T Consensus 60 ~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 139 (302)
T PF10186_consen 60 QLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQ 139 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777788888888888888888888888888888888777754555555556666666666666666555
Q ss_pred --HHHHHHHHHhhccc
Q 019459 120 --LETFKRQLMQSLND 133 (340)
Q Consensus 120 --LE~FKk~LmqSLqe 133 (340)
|..=++.|++.|..
T Consensus 140 ~~l~~~r~~l~~~l~~ 155 (302)
T PF10186_consen 140 SQLARRRRQLIQELSE 155 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 55566777776643
No 13
>PRK09039 hypothetical protein; Validated
Probab=95.31 E-value=0.32 Score=48.30 Aligned_cols=91 Identities=11% Similarity=0.164 Sum_probs=71.8
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-hhHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLS-RDLAKL 120 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~-RDvaKL 120 (340)
....|+..|+.+...++...+|....|.-|+.+++.|..+|....+.|..+++........-+.|..-+.++- +.+..|
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l 192 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQEL 192 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888888888888888888888888888888888888888877777777777777766666654 448889
Q ss_pred HHHHHHHHhhcc
Q 019459 121 ETFKRQLMQSLN 132 (340)
Q Consensus 121 E~FKk~LmqSLq 132 (340)
+.||..+..-|.
T Consensus 193 ~~~~~~~~~~l~ 204 (343)
T PRK09039 193 NRYRSEFFGRLR 204 (343)
T ss_pred HHhHHHHHHHHH
Confidence 999999977775
No 14
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=94.81 E-value=0.96 Score=37.27 Aligned_cols=87 Identities=15% Similarity=0.196 Sum_probs=76.4
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019459 47 VSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQ 126 (340)
Q Consensus 47 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~ 126 (340)
+-+||.+...++..+..|-..+..|++++..|+.....++.+...|.-....|..|+..|-..+.|=+.-+.+|...=+.
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~~ 84 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETEKE 84 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55789999999999999999999999999999999999999999988888888888888888888888888888877777
Q ss_pred HHhhccc
Q 019459 127 LMQSLND 133 (340)
Q Consensus 127 LmqSLqe 133 (340)
+++.|.+
T Consensus 85 ~~~~l~~ 91 (96)
T PF08647_consen 85 FVRKLKN 91 (96)
T ss_pred HHHHHHH
Confidence 7766643
No 15
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.81 E-value=0.52 Score=50.03 Aligned_cols=86 Identities=21% Similarity=0.298 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHH------hhhhHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 019459 33 DLARKITSMAIASR------VSKLETETGTMRQMLYEKDRL-------ICELEERLSHVQKVYQEADSKLKIFIDDNAKL 99 (340)
Q Consensus 33 dlArkIts~A~atR------Vs~LE~E~~~LR~~laEKd~~-------i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL 99 (340)
-=||+|+.-+-+.| +.+|+.|+..||.++.++... +.+...+++.++.++.-+..+.+..+||...|
T Consensus 95 ~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~L 174 (546)
T KOG0977|consen 95 ATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRL 174 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34677777765544 567888888888888888443 44556777888888888999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHH
Q 019459 100 AKERDSLAMTARNLSRDLA 118 (340)
Q Consensus 100 ~~E~~sLa~TvKKL~RDva 118 (340)
.+||..|-..+..+..+++
T Consensus 175 k~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 175 KAENSRLREELARARKQLD 193 (546)
T ss_pred HHHhhhhHHHHHHHHHHHH
Confidence 9999999888877765444
No 16
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.74 E-value=0.71 Score=44.37 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=22.1
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019459 48 SKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIF 92 (340)
Q Consensus 48 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a 92 (340)
.++++|..+++..+.+++-.+.+|+.+|..++..+++.+.|+..+
T Consensus 34 ~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~ 78 (239)
T COG1579 34 KKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRA 78 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555555555544444443
No 17
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.66 E-value=0.55 Score=40.77 Aligned_cols=68 Identities=21% Similarity=0.286 Sum_probs=50.4
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 48 SKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 48 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
..|+..+.+|+..+..-...+..|+++++.+++.+..+..+.++ |.++...+..++|.+..||.||..
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~-------l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQ-------LQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666677777777777777777777777766 888888888888888888888764
No 18
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.60 E-value=0.68 Score=44.52 Aligned_cols=88 Identities=24% Similarity=0.311 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019459 34 LARKITSMAIASRVSKLETETGTMRQMLYEKDRLIC--ELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTAR 111 (340)
Q Consensus 34 lArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~--~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvK 111 (340)
++..|.=-.|-.-|+++|.|+..+|.++..=...+. --+..++.|+.+++.+..|...+.+|...|.++...|...++
T Consensus 48 ~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~ 127 (239)
T COG1579 48 EALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIE 127 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677889999999999999998764333221 123445555555555555555555555555544444444444
Q ss_pred HHhhhHHHHH
Q 019459 112 NLSRDLAKLE 121 (340)
Q Consensus 112 KL~RDvaKLE 121 (340)
-|...+.++|
T Consensus 128 ~l~~~~~~~e 137 (239)
T COG1579 128 DLKERLERLE 137 (239)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 19
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.45 E-value=0.21 Score=57.04 Aligned_cols=93 Identities=24% Similarity=0.305 Sum_probs=68.3
Q ss_pred HHHHHhhhhHhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019459 42 AIASRVSKLETETGTMRQML-----------------YEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERD 104 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~l-----------------aEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~ 104 (340)
||.+++..+|..+...|..| .+-.+.|.++++++.++|..|.+....+..|--|.+-|++|.+
T Consensus 1198 ay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~ 1277 (1758)
T KOG0994|consen 1198 AYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFN 1277 (1758)
T ss_pred hhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHH
Confidence 78888888888777777655 3344555566666677777777777777777788899999999
Q ss_pred HHHHHHHHHhhhHHHHH---------HHHHHHHhhcccc
Q 019459 105 SLAMTARNLSRDLAKLE---------TFKRQLMQSLNDD 134 (340)
Q Consensus 105 sLa~TvKKL~RDvaKLE---------~FKk~LmqSLqeD 134 (340)
.|-.|+|.|.-.+.||. ..+..--||++-+
T Consensus 1278 ~l~~~~keL~e~~~~ik~sdi~GA~~~~r~a~~~s~ea~ 1316 (1758)
T KOG0994|consen 1278 GLLTTYKELREQLEKIKESDILGAFNSTRHAYEQSAEAE 1316 (1758)
T ss_pred HHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHH
Confidence 99999999999888864 3445555565433
No 20
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.44 E-value=0.63 Score=50.03 Aligned_cols=88 Identities=22% Similarity=0.306 Sum_probs=69.7
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019459 41 MAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEAD---SKLKIFIDDNAKLAKERDSLAMTARNLSRDL 117 (340)
Q Consensus 41 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~---~rl~~a~de~~kL~~E~~sLa~TvKKL~RDv 117 (340)
+++-.+|.+||.|+..|+..+-|.++.|+.|+.+++.+...+.+-- -.+.+-..+..+|.++-..=...|.-|.|.+
T Consensus 425 ~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 425 KKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778889999999999999999999999999999999888766322 1233344566778777777788889999999
Q ss_pred HHHHHHHHHHH
Q 019459 118 AKLETFKRQLM 128 (340)
Q Consensus 118 aKLE~FKk~Lm 128 (340)
++|+..++-..
T Consensus 505 ~~l~k~~~lE~ 515 (652)
T COG2433 505 AELRKMRKLEL 515 (652)
T ss_pred HHHHHHHhhhh
Confidence 99888877433
No 21
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.21 E-value=0.95 Score=48.06 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=49.8
Q ss_pred HHHHHHHhhhhHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019459 40 SMAIASRVSKLETETGTMRQMLYE--KDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTAR 111 (340)
Q Consensus 40 s~A~atRVs~LE~E~~~LR~~laE--Kd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvK 111 (340)
-.++..++..||.|+..|.++|.. .+..+..|++++..++..+.++...+....++...|.++...|...++
T Consensus 393 ~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (650)
T TIGR03185 393 KSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLD 466 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778889999999999999975 346777777777777777777766666555555555444444444443
No 22
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.20 E-value=1.6 Score=38.90 Aligned_cols=86 Identities=15% Similarity=0.297 Sum_probs=51.3
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
..-.+...|+.|...+...+.+....+..+++-...+...+.+..+++....++..++.+|-..|-+.++.+.+.+.+++
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~ 164 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELR 164 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666666666666666666666666666666666666666644444445554444
Q ss_pred HHHHHH
Q 019459 122 TFKRQL 127 (340)
Q Consensus 122 ~FKk~L 127 (340)
...+.+
T Consensus 165 ~~~~~~ 170 (191)
T PF04156_consen 165 SQLERL 170 (191)
T ss_pred HHHHHH
Confidence 444443
No 23
>PRK02224 chromosome segregation protein; Provisional
Probab=94.05 E-value=1.4 Score=47.74 Aligned_cols=18 Identities=11% Similarity=0.135 Sum_probs=7.3
Q ss_pred HhhhhHhHHHHHHHHHHH
Q 019459 46 RVSKLETETGTMRQMLYE 63 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laE 63 (340)
-...++..+..|+..|.+
T Consensus 181 ~~~~~~~~~~~~~~~l~~ 198 (880)
T PRK02224 181 VLSDQRGSLDQLKAQIEE 198 (880)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 24
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=94.03 E-value=0.84 Score=38.90 Aligned_cols=72 Identities=17% Similarity=0.237 Sum_probs=60.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019459 49 KLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 49 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKL 120 (340)
+|=.|-.+||++..--...+-+=|.+...|...|..-++.|+..++|+.-|.=-|+.|..-|--|+-++...
T Consensus 2 kla~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 2 KLAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466788999999998888888889999999999999999999988888888888888877777777776633
No 25
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=93.97 E-value=1.1 Score=42.08 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=68.8
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
.|--+||++..-+...+++-+.....|+.-+.-...+=++..++-.++.+|-..|..|+..+-..+.+|+|.|.-|+.
T Consensus 105 irR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 105 IRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888888888888888888888888888999999999999999999999999999999998874
No 26
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=93.93 E-value=0.93 Score=35.77 Aligned_cols=61 Identities=26% Similarity=0.279 Sum_probs=36.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019459 49 KLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMT 109 (340)
Q Consensus 49 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~T 109 (340)
+||+++..||..|.--.+.+.-.+.-...|-.+=..+-.+|..|-+++.+|..|++.|..-
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888887777555555555444444444444445555666666666666666666544
No 27
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.87 E-value=0.74 Score=46.91 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 019459 293 SAFLASIKEL 302 (340)
Q Consensus 293 saFLANIKEL 302 (340)
..|+.-|+++
T Consensus 516 ~~~~~~l~~~ 525 (562)
T PHA02562 516 KALLSILDSL 525 (562)
T ss_pred HHHHHHHHhC
Confidence 3344444444
No 28
>PRK03918 chromosome segregation protein; Provisional
Probab=93.66 E-value=2.1 Score=46.12 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=16.3
Q ss_pred cCCCCchhhhHHHHHHHHHHHHHHhhhhHhHH
Q 019459 23 VIPTDPYDQLDLARKITSMAIASRVSKLETET 54 (340)
Q Consensus 23 vLP~DPyEQLdlArkIts~A~atRVs~LE~E~ 54 (340)
++-.|-|+++.-.-+-....+..++..|+..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 185 (880)
T PRK03918 154 ILGLDDYENAYKNLGEVIKEIKRRIERLEKFI 185 (880)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555554444444445555555555544
No 29
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=93.62 E-value=1.2 Score=43.94 Aligned_cols=80 Identities=25% Similarity=0.334 Sum_probs=39.3
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHh
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDN-------AKLAKERDSLAMTARNLS 114 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~-------~kL~~E~~sLa~TvKKL~ 114 (340)
++-..+..||.|...|.+.|.+-+....+|.+.+..|+.++.+.+..-.....+. ..+.+|+++|-+.+.-+.
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~ 126 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYAS 126 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666655555555555555555555554444433332222222 233355555555555555
Q ss_pred hhHHHHH
Q 019459 115 RDLAKLE 121 (340)
Q Consensus 115 RDvaKLE 121 (340)
..|+||+
T Consensus 127 ~~L~~L~ 133 (314)
T PF04111_consen 127 NQLDRLR 133 (314)
T ss_dssp HHHHCHH
T ss_pred HHHHHHH
Confidence 5544443
No 30
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=93.56 E-value=1.6 Score=38.51 Aligned_cols=79 Identities=16% Similarity=0.260 Sum_probs=51.4
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRL----------ICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTAR 111 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~----------i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvK 111 (340)
++-.|+..||.++..+..+|.+-... ...|..||..||..|..+..+|..+.+........-+-+-..|+
T Consensus 39 sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~ 118 (143)
T PF12718_consen 39 SLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVK 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 46677888888877777766543322 34577788888888888888887766665555555555555555
Q ss_pred HHhhhHHHH
Q 019459 112 NLSRDLAKL 120 (340)
Q Consensus 112 KL~RDvaKL 120 (340)
.|......+
T Consensus 119 ~le~~~~~~ 127 (143)
T PF12718_consen 119 ALEQERDQW 127 (143)
T ss_pred HHHhhHHHH
Confidence 555444433
No 31
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.52 E-value=1 Score=49.71 Aligned_cols=61 Identities=23% Similarity=0.374 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 019459 37 KITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAK 98 (340)
Q Consensus 37 kIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~k 98 (340)
|++--||+.. -+-|+|+..|+++|..--..-..+++||+.||.+|-++-..|+.+.||++.
T Consensus 10 kvaeeav~gw-ekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq 70 (769)
T PF05911_consen 10 KVAEEAVSGW-EKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQ 70 (769)
T ss_pred HHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHH
Confidence 6677777654 467999999999999999999999999999999999999999999999843
No 32
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=93.39 E-value=0.43 Score=38.87 Aligned_cols=47 Identities=21% Similarity=0.272 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 019459 69 CELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSR 115 (340)
Q Consensus 69 ~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~R 115 (340)
.+|..++-.|+..|.+.-+|.....+|+.||..||.-|..-|..|..
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666888899999999999999999999999999999999988865
No 33
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=93.33 E-value=1.4 Score=48.17 Aligned_cols=61 Identities=15% Similarity=0.178 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 61 LYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 61 laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
+.+.+..+.++++++..++..+.+....+.....+...|.++.+.|...+..+...+.+++
T Consensus 863 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~ 923 (1164)
T TIGR02169 863 KEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELK 923 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444444444444444444444444433
No 34
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.87 E-value=1.6 Score=46.60 Aligned_cols=92 Identities=16% Similarity=0.256 Sum_probs=63.2
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------------
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTAR------------- 111 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvK------------- 111 (340)
+|...|+-..++|+..+..=..-..++..+-..++..|.....-+..-++|.++|+++++.|-+.|.
T Consensus 259 ~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn 338 (581)
T KOG0995|consen 259 GKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMN 338 (581)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 3444444444444444444444455555555666677777777788888999999999999988875
Q ss_pred ----HHhhhHHHHHHHHHHHHhhccccCC
Q 019459 112 ----NLSRDLAKLETFKRQLMQSLNDDNS 136 (340)
Q Consensus 112 ----KL~RDvaKLE~FKk~LmqSLqeD~~ 136 (340)
+|.|+|.|++.=+-.|++.+-+.+.
T Consensus 339 ~Er~~l~r~l~~i~~~~d~l~k~vw~~~l 367 (581)
T KOG0995|consen 339 LERNKLKRELNKIQSELDRLSKEVWELKL 367 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4677888888777888887766655
No 35
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=92.73 E-value=2.4 Score=41.13 Aligned_cols=90 Identities=23% Similarity=0.331 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHHHH-------Hhh---hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019459 31 QLDLARKITSMAIAS-------RVS---KLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLA 100 (340)
Q Consensus 31 QLdlArkIts~A~at-------RVs---~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~ 100 (340)
-++|.||=.-+|+.. ||- -|-.....+|.+|.|-...-.+|.+++..||..+.+.+.||+...-||..|.
T Consensus 104 D~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~Le 183 (290)
T COG4026 104 DVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLE 183 (290)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888753 221 2334455667777777788888999999999999999999999666666666
Q ss_pred HHHHHHHHHHHHHhhhHHHH
Q 019459 101 KERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 101 ~E~~sLa~TvKKL~RDvaKL 120 (340)
++.+.|-.-|-+|..-.+.|
T Consensus 184 E~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 184 EMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHhchhHHHHHHHHHHHh
Confidence 66666666666665555444
No 36
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=92.52 E-value=2.1 Score=46.53 Aligned_cols=9 Identities=22% Similarity=0.844 Sum_probs=4.3
Q ss_pred HHHHHHhhC
Q 019459 313 LRKAEEIFG 321 (340)
Q Consensus 313 L~KA~eIFG 321 (340)
+..|+.|||
T Consensus 1155 ~~~~d~~~~ 1163 (1179)
T TIGR02168 1155 MEVADQLYG 1163 (1179)
T ss_pred HHHhhhHee
Confidence 344555554
No 37
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=92.42 E-value=2.1 Score=46.84 Aligned_cols=11 Identities=18% Similarity=0.374 Sum_probs=6.4
Q ss_pred HHHHHHHHhhC
Q 019459 311 ETLRKAEEIFG 321 (340)
Q Consensus 311 ETL~KA~eIFG 321 (340)
.++..|+.++|
T Consensus 1138 ~~~~~~d~~~~ 1148 (1164)
T TIGR02169 1138 PMIEYADRAIG 1148 (1164)
T ss_pred HHHHhcceeEe
Confidence 45556666665
No 38
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.41 E-value=0.51 Score=46.17 Aligned_cols=35 Identities=29% Similarity=0.545 Sum_probs=31.9
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 47 VSKLETETGTMRQMLYEKDRLICELEERLSHVQKV 81 (340)
Q Consensus 47 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~ 81 (340)
+.+|+.||++|+..|++||.+|-+-.++++.|-..
T Consensus 227 i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad 261 (305)
T KOG3990|consen 227 IQKLKEEIARLKKLLHQKDQLILEKDKQISNLKAD 261 (305)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcc
Confidence 56899999999999999999999999999987663
No 39
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=92.40 E-value=4.8 Score=35.87 Aligned_cols=52 Identities=13% Similarity=0.349 Sum_probs=24.8
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 29 YDQLDLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQE 84 (340)
Q Consensus 29 yEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e 84 (340)
|||| +|-...+..++..=..|+.+||.....-=+.+...++++..+...+..
T Consensus 44 FeqL----kien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~ 95 (177)
T PF13870_consen 44 FEQL----KIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELER 95 (177)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666 444555555555555555555554444444444444444433333333
No 40
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.38 E-value=1.7 Score=42.60 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=10.2
Q ss_pred HHHHhhhhHhHHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLY 62 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~la 62 (340)
+..|-..|+.|+..||+...
T Consensus 182 l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 182 LRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555443
No 41
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.36 E-value=3.2 Score=43.56 Aligned_cols=101 Identities=22% Similarity=0.167 Sum_probs=59.1
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHh-HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-------HHhH
Q 019459 29 YDQLDLARKITSMAIASRVSKLET-ETGTMRQMLYEKDRLICE-------LEERLSHVQKVYQEADSKL-------KIFI 93 (340)
Q Consensus 29 yEQLdlArkIts~A~atRVs~LE~-E~~~LR~~laEKd~~i~~-------Lq~r~~~le~~L~e~~~rl-------~~a~ 93 (340)
..||+=-|+--. .+++++|- ++..+|+.+.++-....+ ++...-.+|.-|++.+.|+ ..-.
T Consensus 327 ~sqleSqr~y~e----~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 327 TSQLESQRKYYE----QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred hhhhhHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777776655 66666666 777777776666554444 3333333444444444444 4445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019459 94 DDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSLND 133 (340)
Q Consensus 94 de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 133 (340)
|+|++|.++.+....++||+++...+.-.=|.--++-|||
T Consensus 403 E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqE 442 (493)
T KOG0804|consen 403 EENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQE 442 (493)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677777777777777776665554444444444444
No 42
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=92.21 E-value=2.5 Score=40.30 Aligned_cols=82 Identities=23% Similarity=0.368 Sum_probs=60.8
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHh
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKL-------AKERDSLAMTARNLS 114 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL-------~~E~~sLa~TvKKL~ 114 (340)
-|.-|+-.+|.|..+.+..|.+..+-|..|.++.-.++.+-.....+-..+.+++..| .+|+..|..-+..+.
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~ 88 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAE 88 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999998888777777666666666666555 457778888888888
Q ss_pred hhHHHHHHH
Q 019459 115 RDLAKLETF 123 (340)
Q Consensus 115 RDvaKLE~F 123 (340)
..+++|+.=
T Consensus 89 ~~i~~l~ee 97 (246)
T PF00769_consen 89 AEIARLEEE 97 (246)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
No 43
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=92.20 E-value=1.9 Score=39.62 Aligned_cols=76 Identities=24% Similarity=0.365 Sum_probs=37.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHH
Q 019459 49 KLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSR-DLAKLETFKR 125 (340)
Q Consensus 49 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~R-DvaKLE~FKk 125 (340)
.++..+.+|..++.+....|.+|++++..+...-.++..|-. .+++...|.+|+..|...+.++.+ |-.+++..|+
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~-~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~ 142 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREE-LLEELEELKKELKELKKELEKYSENDPEKIEKLKE 142 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 445555666666666666666666666655444444433332 234444444444444444443322 3334444444
No 44
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.18 E-value=1.5 Score=41.01 Aligned_cols=73 Identities=10% Similarity=0.188 Sum_probs=47.2
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDL 117 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDv 117 (340)
++-..+..|+.+...+++... ...++|++++..++....+...+..+..++.+++.+|++.|......+.+++
T Consensus 97 ~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777665543 4555666666666666666666666666666667777777766666666554
No 45
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=92.14 E-value=6.1 Score=32.88 Aligned_cols=67 Identities=19% Similarity=0.250 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019459 65 DRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSL 131 (340)
Q Consensus 65 d~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 131 (340)
...-..|++.+..++.-|.+.+++...|+..-..=.+.+......+++|..++..|...+..+..-|
T Consensus 38 ~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l 104 (126)
T PF13863_consen 38 EKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKL 104 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567777788888888888888888887777777777777777777777777777666665544
No 46
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.13 E-value=4.2 Score=38.20 Aligned_cols=46 Identities=15% Similarity=0.210 Sum_probs=21.2
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
|+.++..|...|.+.+..-.+.+..|+.....++..+.....++..
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~ 88 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELAS 88 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444433
No 47
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=91.95 E-value=3.2 Score=38.88 Aligned_cols=79 Identities=18% Similarity=0.224 Sum_probs=70.7
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019459 41 MAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAK 119 (340)
Q Consensus 41 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaK 119 (340)
+..-.|+..||..+...+..+.+-++...+...|+..++..|..+..|+..+......|..+-..+.+.+|.|.--..+
T Consensus 88 ~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~ 166 (237)
T PF00261_consen 88 QSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEK 166 (237)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4567899999999999999999999999999999999999999999999999999999999999998888877654443
No 48
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.75 E-value=3.4 Score=36.75 Aligned_cols=72 Identities=18% Similarity=0.314 Sum_probs=47.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 50 LETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 50 LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
++.|+..+.+.+.+-.+.+.++++++..++..+.....-.....++......+-+++...++.+.+++..|.
T Consensus 79 ~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 79 LQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666666666666666666666666666666666666555556666666666666677777777666666
No 49
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.73 E-value=3.7 Score=40.25 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 56 TMRQMLYEKDRLICELEERLSHVQKVYQEADSKL 89 (340)
Q Consensus 56 ~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl 89 (340)
.||+.|++-+..|.++++.+..++.+|.+.++++
T Consensus 213 ~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i 246 (325)
T PF08317_consen 213 ALRQELAEQKEEIEAKKKELAELQEELEELEEKI 246 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333333333333333333
No 50
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.71 E-value=3.1 Score=41.21 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019459 53 ETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAM 108 (340)
Q Consensus 53 E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~ 108 (340)
|..++|.+|++-+..|...+.+++.++.+|++.++++....+++..+..+-+.+-.
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888888888888888888888888888887777777777766666655
No 51
>PRK02224 chromosome segregation protein; Provisional
Probab=91.46 E-value=4.2 Score=44.12 Aligned_cols=41 Identities=24% Similarity=0.235 Sum_probs=19.7
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 47 VSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADS 87 (340)
Q Consensus 47 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~ 87 (340)
+..|+..+..++..+.++.+.+.+|++++..|+..+.+...
T Consensus 518 ~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~ 558 (880)
T PRK02224 518 REDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKRE 558 (880)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455555555555555555555544443
No 52
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=91.46 E-value=7.8 Score=40.02 Aligned_cols=79 Identities=22% Similarity=0.200 Sum_probs=60.1
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHH---
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKL--- 120 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKL--- 120 (340)
.+||+++|.|+..-|..-.+- .++.++.+++++-+.....+.|..-+.-+.-|.+|+.+|-.+||.|.-|...|
T Consensus 219 ksr~~k~eee~aaERerglqt---eaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~pN 295 (561)
T KOG1103|consen 219 KSRTKKGEEEAAAERERGLQT---EAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRPN 295 (561)
T ss_pred ccccCCChHHHHHHHhhccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcc
Confidence 478888888887666544333 34556667777777777788888877777889999999999999999888765
Q ss_pred HHHHH
Q 019459 121 ETFKR 125 (340)
Q Consensus 121 E~FKk 125 (340)
|.+|+
T Consensus 296 eqLk~ 300 (561)
T KOG1103|consen 296 EQLKG 300 (561)
T ss_pred ccccC
Confidence 56666
No 53
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.21 E-value=5.7 Score=46.13 Aligned_cols=114 Identities=22% Similarity=0.269 Sum_probs=75.9
Q ss_pred CchhHHh-cCCCCchhhhHHHHHHHHH---------------HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 16 LPDEVLA-VIPTDPYDQLDLARKITSM---------------AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQ 79 (340)
Q Consensus 16 Lp~eils-vLP~DPyEQLdlArkIts~---------------A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le 79 (340)
|-+|||. +||.+|.+=.+|+-+|-.. +=..|+..|++|+.+-|....+-.....+.++-+...|
T Consensus 1497 vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad 1576 (1758)
T KOG0994|consen 1497 VAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEAD 1576 (1758)
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4456665 6999999888888777543 23578999999999999887777666777777777666
Q ss_pred HHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHh
Q 019459 80 KVYQEADS-------KLKIFIDDNAKLAKERDSLAMTARNLSRDLAKL----ETFKRQLMQ 129 (340)
Q Consensus 80 ~~L~e~~~-------rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKL----E~FKk~Lmq 129 (340)
+++..+.. -+..|.+...|..+|-..--.++...+..|++| |.+|...||
T Consensus 1577 ~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~q 1637 (1758)
T KOG0994|consen 1577 VAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQ 1637 (1758)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66555544 445555555666666655444444444555544 456666665
No 54
>PHA02562 46 endonuclease subunit; Provisional
Probab=91.17 E-value=3.7 Score=41.96 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=14.2
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRLICELEERLSHV 78 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~l 78 (340)
..|+..|+.++..+|..+.+..+.+..|+.++..|
T Consensus 336 ~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l 370 (562)
T PHA02562 336 SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEEL 370 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333333333333333
No 55
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.03 E-value=8 Score=35.88 Aligned_cols=88 Identities=16% Similarity=0.191 Sum_probs=46.9
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
....|+..|+.++..+|..+.++.+.+.++++.+......|...........+...++.++-..+-..+.+|.+.+.+--
T Consensus 67 ~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r 146 (302)
T PF10186_consen 67 ELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRR 146 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777777777777777777777666666522222222222233333333333333444444444433
Q ss_pred HHHHHHHh
Q 019459 122 TFKRQLMQ 129 (340)
Q Consensus 122 ~FKk~Lmq 129 (340)
...=..+.
T Consensus 147 ~~l~~~l~ 154 (302)
T PF10186_consen 147 RQLIQELS 154 (302)
T ss_pred HHHHHHHH
Confidence 33333333
No 56
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=90.84 E-value=9.7 Score=38.42 Aligned_cols=101 Identities=17% Similarity=0.235 Sum_probs=71.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----------------
Q 019459 31 QLDLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFI----------------- 93 (340)
Q Consensus 31 QLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~----------------- 93 (340)
.|.-...-|..|+..||...+.--..|--++.+-...|++++.-+..|+.++.+-..-|+.|.
T Consensus 237 dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD 316 (384)
T PF03148_consen 237 DLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRD 316 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHh
Confidence 344445667889999998666666666666666666666666666666666665555544433
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019459 94 DDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSL 131 (340)
Q Consensus 94 de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 131 (340)
.-+..|.+|-..|..++.+|+.-|...+..-+.|....
T Consensus 317 ~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~ 354 (384)
T PF03148_consen 317 PPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTR 354 (384)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22478999999999999999999999998888887653
No 57
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=90.74 E-value=3.9 Score=38.91 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=19.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 50 LETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 50 LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
+|.|+..||.+|.+=-...+.|+-.+..+..++.+...|+..
T Consensus 52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~ 93 (312)
T PF00038_consen 52 YEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEE 93 (312)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444
No 58
>PRK09039 hypothetical protein; Validated
Probab=90.71 E-value=2.3 Score=42.39 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=24.6
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFI 93 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~ 93 (340)
.|..|-.||..||.+|+.=+..|.+++++....+..+.+...+|..|+
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555555555555555544444444433
No 59
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.67 E-value=2.1 Score=46.67 Aligned_cols=43 Identities=30% Similarity=0.388 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 38 ITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQK 80 (340)
Q Consensus 38 Its~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~ 80 (340)
-...+...|+..||.|+.+||..|..|++.+..|++.+.+|-.
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455788999999999999999999999999999998864443
No 60
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=90.59 E-value=2.5 Score=40.62 Aligned_cols=34 Identities=29% Similarity=0.395 Sum_probs=30.9
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 48 SKLETETGTMRQMLYEKDRLICELEERLSHVQKV 81 (340)
Q Consensus 48 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~ 81 (340)
..|+.++..|.+++.|-..+|..|+.-+..++..
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5789999999999999999999999999998854
No 61
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=90.54 E-value=2.6 Score=43.59 Aligned_cols=64 Identities=19% Similarity=0.287 Sum_probs=27.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 019459 49 KLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSR 115 (340)
Q Consensus 49 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~R 115 (340)
+||.++..|...+..=++.+.+.+..+..++..+.+.+.+|...+.+. .+.+..|+..+..++|
T Consensus 63 kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~---r~qr~~La~~L~A~~r 126 (420)
T COG4942 63 KLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE---REQRRRLAEQLAALQR 126 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 333333333333333333333333333333333344444443322222 3445566666666665
No 62
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=90.53 E-value=6.9 Score=36.67 Aligned_cols=73 Identities=22% Similarity=0.236 Sum_probs=39.4
Q ss_pred HHHHhhhhHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 019459 43 IASRVSKLETETGTMRQMLYEK-------DRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSR 115 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEK-------d~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~R 115 (340)
+-+|+..||.++..+...|..- ......+++++..|+..|.++..|.-.|.....+|.++.+.|-..+.+...
T Consensus 139 ~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~ 218 (237)
T PF00261_consen 139 AESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKE 218 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555321 122344555566666666666666666666666666666666555544443
No 63
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=90.36 E-value=3 Score=43.09 Aligned_cols=81 Identities=14% Similarity=0.157 Sum_probs=58.5
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHhHHHHHHHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVY------------------QEADSKLKIFIDDNAKLAKER 103 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L------------------~e~~~rl~~a~de~~kL~~E~ 103 (340)
+...+|..|+.++..|+.++++-...+..++.++.-|+.-- .+..+-+....++..+|..+.
T Consensus 68 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (525)
T TIGR02231 68 PDPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTED 147 (525)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35558888888888888888888888888888887776643 222333333445667777888
Q ss_pred HHHHHHHHHHhhhHHHHHH
Q 019459 104 DSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 104 ~sLa~TvKKL~RDvaKLE~ 122 (340)
..|...+++|.+.+++|+.
T Consensus 148 ~~~~~~~~~~~~~l~~l~~ 166 (525)
T TIGR02231 148 REAERRIRELEKQLSELQN 166 (525)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888754
No 64
>PRK10698 phage shock protein PspA; Provisional
Probab=90.18 E-value=5.6 Score=37.35 Aligned_cols=94 Identities=17% Similarity=0.182 Sum_probs=44.3
Q ss_pred CchhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------------
Q 019459 27 DPYDQLDLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFID------------ 94 (340)
Q Consensus 27 DPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~d------------ 94 (340)
||..-|++. +..+|.++..+|+.++.=-..-..++.++..++....+-..+-..|++
T Consensus 24 DP~k~l~q~-----------i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~ 92 (222)
T PRK10698 24 DPQKLVRLM-----------IQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALI 92 (222)
T ss_pred CHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666555554 334455555555555443333334444444444444333333333332
Q ss_pred -------HHHHHHHHHHHHHHHHHHHhhhHHHH-------HHHHHHHHhhc
Q 019459 95 -------DNAKLAKERDSLAMTARNLSRDLAKL-------ETFKRQLMQSL 131 (340)
Q Consensus 95 -------e~~kL~~E~~sLa~TvKKL~RDvaKL-------E~FKk~LmqSL 131 (340)
....|..+.+....+|.+|..++.+| ++=|.+|+.-.
T Consensus 93 ~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~ 143 (222)
T PRK10698 93 EKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRH 143 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333444555555665555555544 44455565443
No 65
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=90.08 E-value=3 Score=33.26 Aligned_cols=53 Identities=21% Similarity=0.322 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 69 CELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 69 ~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
.+-.++....+.++.+....+..+..+++.|..-.+.|...|..|+..|.+|.
T Consensus 17 ~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 17 QSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455666777778888888888888889999999999999999999999884
No 66
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.86 E-value=3.7 Score=46.82 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019459 98 KLAKERDSLAMTARNLSRDLAKLETFKRQLMQSL 131 (340)
Q Consensus 98 kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 131 (340)
.+..++....+-.+-|.+.|.|||..-..|-..+
T Consensus 391 ~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~ 424 (1074)
T KOG0250|consen 391 ELGSELEERENKLEQLKKEVEKLEEQINSLREEL 424 (1074)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666777777777777444444333
No 67
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=89.84 E-value=1.8 Score=36.76 Aligned_cols=49 Identities=22% Similarity=0.394 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 019459 67 LICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSR 115 (340)
Q Consensus 67 ~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~R 115 (340)
.+.+|++++..+-.++.+....+...++||+.|.-||..|-..+.++..
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666777777777777777778888888888888877766666554
No 68
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=89.80 E-value=9.4 Score=34.89 Aligned_cols=94 Identities=19% Similarity=0.224 Sum_probs=47.3
Q ss_pred CchhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhHH
Q 019459 27 DPYDQLDLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLK------------IFID 94 (340)
Q Consensus 27 DPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~------------~a~d 94 (340)
||...|+.+.+ .+|.++..+|..++.--.....|+.++..++....+-..+.. .|+.
T Consensus 23 DP~~~l~q~ir-----------d~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~ 91 (221)
T PF04012_consen 23 DPEKMLEQAIR-----------DMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQ 91 (221)
T ss_pred CHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 67766666543 444444444444444444444444444444444433333333 3444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019459 95 DNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSL 131 (340)
Q Consensus 95 e~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 131 (340)
++..+..+...|..++..+...+.+|+..-+.|-..|
T Consensus 92 ~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl 128 (221)
T PF04012_consen 92 RKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKL 128 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666666666666555555544444
No 69
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=89.72 E-value=4.4 Score=43.81 Aligned_cols=86 Identities=20% Similarity=0.265 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHH--------HHhhhhHhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 019459 31 QLDLARKITSMAIA--------SRVSKLETETGTMRQMLYEKD--------RLICELEERLSHVQKVYQEADSKLKIFID 94 (340)
Q Consensus 31 QLdlArkIts~A~a--------tRVs~LE~E~~~LR~~laEKd--------~~i~~Lq~r~~~le~~L~e~~~rl~~a~d 94 (340)
+.+++-|+.-+-+. +||--||.|+..||.+++.-. ..|+.+...+.+.|...++...-+.+
T Consensus 227 dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~--- 303 (629)
T KOG0963|consen 227 DEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIER--- 303 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHH---
Confidence 45566666554332 688899999999998875311 22333333333333333333322221
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHH
Q 019459 95 DNAKLAKERDSLAMTARNLSRDLAK 119 (340)
Q Consensus 95 e~~kL~~E~~sLa~TvKKL~RDvaK 119 (340)
.++-|++|+...+++|.+|.+.+..
T Consensus 304 ~~~S~~~e~e~~~~qI~~le~~l~~ 328 (629)
T KOG0963|consen 304 LEASLVEEREKHKAQISALEKELKA 328 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555544
No 70
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=89.70 E-value=4.1 Score=49.17 Aligned_cols=92 Identities=22% Similarity=0.286 Sum_probs=78.1
Q ss_pred hhhHHHHHHHH-----HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019459 30 DQLDLARKITS-----MAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERD 104 (340)
Q Consensus 30 EQLdlArkIts-----~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~ 104 (340)
|.++++-.|.. -+..+.=.+||+++..|...|+|......-..+|+-.+...+......|+...+.+.+|-..|.
T Consensus 1696 e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~ 1775 (1930)
T KOG0161|consen 1696 ELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETSQKLERLKK 1775 (1930)
T ss_pred HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44455555544 4566777899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHH
Q 019459 105 SLAMTARNLSRDLAKLE 121 (340)
Q Consensus 105 sLa~TvKKL~RDvaKLE 121 (340)
+|-.+||-|.--+..+|
T Consensus 1776 ~LE~~~kdLq~rL~e~E 1792 (1930)
T KOG0161|consen 1776 SLERQVKDLQLRLDEAE 1792 (1930)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998875544444
No 71
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.59 E-value=20 Score=34.73 Aligned_cols=33 Identities=9% Similarity=0.163 Sum_probs=14.6
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERL 75 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~ 75 (340)
+..++..|+.++..++.++..-...+..+++++
T Consensus 142 ~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l 174 (423)
T TIGR01843 142 LRAQLELILAQIKQLEAELAGLQAQLQALRQQL 174 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455544444444444444333333333
No 72
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=89.42 E-value=2.7 Score=45.89 Aligned_cols=87 Identities=20% Similarity=0.301 Sum_probs=55.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHhhhHHHHH
Q 019459 49 KLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAM-------TARNLSRDLAKLE 121 (340)
Q Consensus 49 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~-------TvKKL~RDvaKLE 121 (340)
+||+|+.+||..|.-......||+.+++.|+..=..+..-|.+...||+-|+.....|.. ++.-|.|-|+-..
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999998888775445555566655555555554333332 2222333333333
Q ss_pred HHHHHHHhhccccC
Q 019459 122 TFKRQLMQSLNDDN 135 (340)
Q Consensus 122 ~FKk~LmqSLqeD~ 135 (340)
.-|..|=+.|++|-
T Consensus 502 ~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 502 RQRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444445555554
No 73
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=89.29 E-value=5.3 Score=45.49 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHhhCCCCh
Q 019459 289 YEQFSAFLASIKELNAQKQTREETLRKAEEIFGTDNK 325 (340)
Q Consensus 289 YEQFsaFLANIKELNAhkQTREETL~KA~eIFG~eNk 325 (340)
.|+|.....-..+|+.+++.-++.+.+..+.+..-++
T Consensus 969 iee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~ 1005 (1163)
T COG1196 969 IEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDK 1005 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555544444444444433333
No 74
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.29 E-value=16 Score=33.85 Aligned_cols=82 Identities=17% Similarity=0.218 Sum_probs=62.0
Q ss_pred HHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 019459 40 SMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQK---VYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRD 116 (340)
Q Consensus 40 s~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~---~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RD 116 (340)
.......|..+..|..+|+.-|..-...+.+|++++...+. .|..+.+|+....++...|.-|...|-.-+.+|.++
T Consensus 43 e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~E 122 (201)
T PF13851_consen 43 EERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQE 122 (201)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677788888888888888888888888887776654 566788888888888877777777777777777777
Q ss_pred HHHHH
Q 019459 117 LAKLE 121 (340)
Q Consensus 117 vaKLE 121 (340)
-.-|.
T Consensus 123 rdeL~ 127 (201)
T PF13851_consen 123 RDELY 127 (201)
T ss_pred HHHHH
Confidence 66554
No 75
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=89.24 E-value=3.1 Score=35.75 Aligned_cols=57 Identities=23% Similarity=0.426 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHHh--------hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 32 LDLARKITSMAIASRV--------SKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSK 88 (340)
Q Consensus 32 LdlArkIts~A~atRV--------s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~r 88 (340)
|||||..=+--+-.|. ..|+-|+..||..|+-|+.++..+.+++...+.-|.|++..
T Consensus 14 lD~aRq~e~~FlqKr~~LS~~kpe~~lkEEi~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL~d~~~~ 78 (106)
T PF11594_consen 14 LDVARQMEAFFLQKRFELSAYKPEQVLKEEINELKEELQRKEQLLQKHYEKIDYWEKLLSDAQNQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999998887777665 46889999999999999999999999999999988887653
No 76
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=89.23 E-value=3.8 Score=43.02 Aligned_cols=63 Identities=21% Similarity=0.214 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHhh
Q 019459 53 ETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFID-DNAKLAKERDSLAMTARNLSR 115 (340)
Q Consensus 53 E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~d-e~~kL~~E~~sLa~TvKKL~R 115 (340)
++..||.++++-......|.++-+.|....+..+.|+.+|++ +...|.+|+..|...+-+|..
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~ 130 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQG 130 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555566655542 233444444444444333333
No 77
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=89.18 E-value=1.8 Score=34.32 Aligned_cols=51 Identities=22% Similarity=0.349 Sum_probs=41.7
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIF 92 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a 92 (340)
.++...-++..-|.+||+++.+-+..|.+|..+++.++..+.....++..+
T Consensus 23 kLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~~ 73 (74)
T PF12329_consen 23 KLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKRA 73 (74)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 456666777778888999998888889999988888888888888888653
No 78
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.15 E-value=17 Score=34.58 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=50.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 019459 49 KLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDD----NAKLAKERDSLAMTARNLSRDLAKLETFK 124 (340)
Q Consensus 49 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de----~~kL~~E~~sLa~TvKKL~RDvaKLE~FK 124 (340)
.+-.|+..+|.++..-...+..|+.+...|+..+.+...++..-.++ ...|..|...|-..+....++...|-..|
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K 292 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVK 292 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667777777777777777777777777776666543332 34555666666666666666666666666
Q ss_pred HHH
Q 019459 125 RQL 127 (340)
Q Consensus 125 k~L 127 (340)
-.|
T Consensus 293 ~~L 295 (312)
T PF00038_consen 293 LAL 295 (312)
T ss_dssp HHH
T ss_pred HhH
Confidence 544
No 79
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=89.02 E-value=8.6 Score=38.11 Aligned_cols=49 Identities=20% Similarity=0.282 Sum_probs=23.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019459 85 ADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSLND 133 (340)
Q Consensus 85 ~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 133 (340)
+..+|.....+.+...++-..+-.++..|+-+|...+.=|..+...|++
T Consensus 209 lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ 257 (312)
T smart00787 209 AKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAE 257 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444445555555555555555555555554443
No 80
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=88.60 E-value=5.2 Score=40.63 Aligned_cols=41 Identities=12% Similarity=0.261 Sum_probs=27.0
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVY 82 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L 82 (340)
.+..++..||.+...|+....++.-.+.+|++++..++..+
T Consensus 251 ~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l 291 (498)
T TIGR03007 251 ELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQK 291 (498)
T ss_pred chHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH
Confidence 34566777777777777766666666666666666666554
No 81
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=88.45 E-value=16 Score=35.40 Aligned_cols=48 Identities=15% Similarity=0.231 Sum_probs=26.8
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLK 90 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~ 90 (340)
+..+...+++++..++.+++.-...+..++.++..++..+..+..++.
T Consensus 135 ~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~ 182 (423)
T TIGR01843 135 FESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELE 182 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555666666655555666666666655555554444443
No 82
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=88.35 E-value=6 Score=39.40 Aligned_cols=93 Identities=12% Similarity=0.153 Sum_probs=57.0
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHH--------------
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFID-DNAKLAKERDSL-------------- 106 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~d-e~~kL~~E~~sL-------------- 106 (340)
.+.+++..||.+...|+....++.-.+-+|+.+++.++..|.+.-.++....+ +...+....+.|
T Consensus 258 ~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l 337 (444)
T TIGR03017 258 NLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVLEL 337 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888888888888888888888888877654444332221 111111222222
Q ss_pred ---HHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019459 107 ---AMTARNLSRDLAKLETFKRQLMQSLNDD 134 (340)
Q Consensus 107 ---a~TvKKL~RDvaKLE~FKk~LmqSLqeD 134 (340)
......|.||++--+..=..|++.+++-
T Consensus 338 ~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~ 368 (444)
T TIGR03017 338 NRQRDEMSVLQRDVENAQRAYDAAMQRYTQT 368 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344566666666666666666666543
No 83
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=88.26 E-value=5.3 Score=44.27 Aligned_cols=64 Identities=25% Similarity=0.366 Sum_probs=55.2
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLA 107 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa 107 (340)
..++..+-+|...|...|.+|++.|.+|.+.-+.+|..+.+...||..++-||.-|.=|-..|.
T Consensus 98 ~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~ 161 (769)
T PF05911_consen 98 SKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLS 161 (769)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888999999999999999999999999999999999999998888877766555543
No 84
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=88.24 E-value=12 Score=42.15 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019459 82 YQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLA 118 (340)
Q Consensus 82 L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDva 118 (340)
+.+....+..++..+.++.++|.+|..+|-++.|...
T Consensus 447 ~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~ 483 (980)
T KOG0980|consen 447 YDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAG 483 (980)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555556666666666666666655443
No 85
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.22 E-value=11 Score=40.18 Aligned_cols=75 Identities=19% Similarity=0.238 Sum_probs=39.6
Q ss_pred CchhHHhcCCCCchhhhHHHHH---------HHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 16 LPDEVLAVIPTDPYDQLDLARK---------ITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEAD 86 (340)
Q Consensus 16 Lp~eilsvLP~DPyEQLdlArk---------Its~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~ 86 (340)
|-+.|-.+|=-|++++|.-=-+ +....+..++..||.++..+..++.+....+..++.++..++..+.+..
T Consensus 171 l~~Ai~~LlGl~~~~~L~~dl~~~~~~~~~~~~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~ 250 (650)
T TIGR03185 171 LKEAIEVLLGLDLIDRLAGDLTNVLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLE 250 (650)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566666632111 1122344556666666666666666666666666666666666555555
Q ss_pred HHHH
Q 019459 87 SKLK 90 (340)
Q Consensus 87 ~rl~ 90 (340)
.++.
T Consensus 251 ~~~~ 254 (650)
T TIGR03185 251 KKFR 254 (650)
T ss_pred HHHH
Confidence 5443
No 86
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=88.20 E-value=10 Score=35.26 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHH
Q 019459 97 AKLAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 97 ~kL~~E~~sLa~TvKKL~RDvaKL 120 (340)
..|..+-+.+..+|.+|.+.|.+|
T Consensus 102 ~~l~~~~~~~~~~v~~l~~~l~~L 125 (219)
T TIGR02977 102 EALERELAAVEETLAKLQEDIAKL 125 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555544
No 87
>KOG4204 consensus Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=88.19 E-value=1.9 Score=41.04 Aligned_cols=65 Identities=20% Similarity=0.390 Sum_probs=58.4
Q ss_pred CCccchHHHHHHHHhcCC--HHHHHHHHHHHHHHhhccccHHHHHHHHHHhhCCCChhHHHHHHHhhc
Q 019459 271 TPRIDGKEFFRQARSRLS--YEQFSAFLASIKELNAQKQTREETLRKAEEIFGTDNKDLYLYFQGLLN 336 (340)
Q Consensus 271 ~~rvDGKEFFRQARsRLS--YEQFsaFLANIKELNAhkQTREETL~KA~eIFG~eNkDLY~~FegLL~ 336 (340)
-+--|..-|.+.++.++. .|-|..||.-.|++=||+-.+.+...+..|+|-. |.||...|...|=
T Consensus 17 ~t~~DAlsYl~~VK~~f~d~p~kY~~FL~im~d~ka~~iD~~~vi~rv~eLfK~-h~~Ll~gfN~fLP 83 (231)
T KOG4204|consen 17 LTLDDALAYLKAVKEAFQDEPEKYDEFLEIMKDFKAQRIDTPGVIARVKELLKG-HPDLLLGFNTFLP 83 (231)
T ss_pred CChHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHcc-CHHHHHHHHhhCc
Confidence 367789999999999886 5679999999999999999999999999999964 7899999988764
No 88
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=88.15 E-value=5.3 Score=41.57 Aligned_cols=69 Identities=17% Similarity=0.156 Sum_probs=38.9
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLS 114 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~ 114 (340)
-.-.|++|...+++++.+|+.++.+||+...+|-..+....+-.+.-..+...+-+++-.+.+-+++|+
T Consensus 35 q~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~ 103 (459)
T KOG0288|consen 35 QLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELR 103 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567777777777777777777777777666655555444444333333333333333444444443
No 89
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=88.14 E-value=6.2 Score=40.08 Aligned_cols=91 Identities=12% Similarity=0.135 Sum_probs=62.1
Q ss_pred HHhhhhHhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHH
Q 019459 45 SRVSKLETETGTMRQMLYEKD--------------RLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERD---SLA 107 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd--------------~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~---sLa 107 (340)
-+|-.|..++..|++++.+.- ..+.+|+.++..++.++.....++....++.+++..+-. .+.
T Consensus 275 P~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 354 (498)
T TIGR03007 275 PDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVE 354 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 456777888888888776531 234556667777777776666666665555555555544 345
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhccccC
Q 019459 108 MTARNLSRDLAKLETFKRQLMQSLNDDN 135 (340)
Q Consensus 108 ~TvKKL~RDvaKLE~FKk~LmqSLqeD~ 135 (340)
.+...|.||+.-.+..=..|++.+++-.
T Consensus 355 ~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 355 AELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999988888888888776643
No 90
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=88.11 E-value=4.3 Score=35.70 Aligned_cols=67 Identities=21% Similarity=0.306 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019459 64 KDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSLN 132 (340)
Q Consensus 64 Kd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLq 132 (340)
|+.+..+|++++..+|.+|++..-.+++++.|+.+-.- ..+.+--...+...++++..|+.|.+-|+
T Consensus 18 K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~--~~~~~i~~q~~~e~~~r~e~k~~l~~ql~ 84 (131)
T PF11068_consen 18 KEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNA--QQIQSIQQQFEQEKQERLEQKNQLLQQLE 84 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999887777543211 24444445667777788888888776663
No 91
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=88.05 E-value=9.3 Score=34.12 Aligned_cols=73 Identities=19% Similarity=0.275 Sum_probs=48.8
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLA 118 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDva 118 (340)
+.+....|+.|...||..-..=+......++||+.||....+...-|...++++.++.++ +...|-.|..++.
T Consensus 64 lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~---~~~~ve~L~~ql~ 136 (140)
T PF10473_consen 64 LTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEE---SKSAVEMLQKQLK 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 445566678888888755444455555666679999998888888888888886555544 4445555555443
No 92
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=87.93 E-value=9.2 Score=40.95 Aligned_cols=80 Identities=25% Similarity=0.301 Sum_probs=60.0
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019459 41 MAIASRVSKLETETGTMRQMLYEKDRLICELEER-----------LSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMT 109 (340)
Q Consensus 41 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r-----------~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~T 109 (340)
-+..-||.+|..|+..+-.-|.|+...-.-|+.+ ++...+.|+|..+.|+.+..|+++|..||.-|..-
T Consensus 367 e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~y 446 (546)
T PF07888_consen 367 EADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEY 446 (546)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444578888888877766666655555455443 45566777788888999999999999999999999
Q ss_pred HHHHhhhHHHH
Q 019459 110 ARNLSRDLAKL 120 (340)
Q Consensus 110 vKKL~RDvaKL 120 (340)
|++|..-+.++
T Consensus 447 i~~Le~r~~~~ 457 (546)
T PF07888_consen 447 IERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHh
Confidence 99888877776
No 93
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=87.89 E-value=4.1 Score=37.46 Aligned_cols=97 Identities=20% Similarity=0.304 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhhhhHhH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 019459 37 KITSMAIASRVSKLETE---------------------TGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDD 95 (340)
Q Consensus 37 kIts~A~atRVs~LE~E---------------------~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de 95 (340)
.|++|.|+-=|..|=.| ...++.++.+=...+..+++++..|+..|.++ ...+...++
T Consensus 26 gI~~~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~-~~~r~~~~e 104 (188)
T PF03962_consen 26 GIVSMSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA-KKGREESEE 104 (188)
T ss_pred CCchhhHHHHHHHHhccccchhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccHH
Confidence 46677777766666554 44566666666666677777777777766666 333444466
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019459 96 NAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSLNDD 134 (340)
Q Consensus 96 ~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD 134 (340)
-.+|.++...|...++.|...++++...=-..++-+.++
T Consensus 105 R~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~ 143 (188)
T PF03962_consen 105 REELLEELEELKKELKELKKELEKYSENDPEKIEKLKEE 143 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 677777777777777777777766554444445544443
No 94
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.75 E-value=4 Score=46.45 Aligned_cols=86 Identities=15% Similarity=0.286 Sum_probs=71.9
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
+-.-.+.|++|++.|+.++..-......+++.+.....-+.+.+.++.-.+-+.+++..|+....-.+|||..+|.|++.
T Consensus 841 ~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~ 920 (1174)
T KOG0933|consen 841 LEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLES 920 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhh
Confidence 34556778888888888888777777888888888888888888888888889999999999999999999999999998
Q ss_pred HHHHHH
Q 019459 123 FKRQLM 128 (340)
Q Consensus 123 FKk~Lm 128 (340)
=++..-
T Consensus 921 e~~~~~ 926 (1174)
T KOG0933|consen 921 EKANAR 926 (1174)
T ss_pred hHHHHH
Confidence 776543
No 95
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=87.72 E-value=6.9 Score=42.29 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=14.4
Q ss_pred HHHHhhhhHhHHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLY 62 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~la 62 (340)
...||..||..+..|+.+++
T Consensus 48 ~~~~V~eLE~sL~eLk~q~~ 67 (617)
T PF15070_consen 48 DISRVQELERSLSELKNQMA 67 (617)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 45677777777777777766
No 96
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=87.56 E-value=6 Score=41.08 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=44.5
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLS 114 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~ 114 (340)
-|..+...|+.++..++.+.+..-..|++.+.++|..+...+..|....++..++.+..+.+-..+++|.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 5566667777777777777666666666666666666666666666655555555555555555555443
No 97
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=87.51 E-value=6.4 Score=47.62 Aligned_cols=75 Identities=23% Similarity=0.328 Sum_probs=59.7
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAK 119 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaK 119 (340)
....++|.|+..|+.++.+.+..+..++.....++..+......+..-.|.+.||.+|+..|-..++.|.-||+.
T Consensus 929 ~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~ 1003 (1930)
T KOG0161|consen 929 RKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQA 1003 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677778888888888888888888888888888888888888888888888888888888887777754
No 98
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=87.26 E-value=14 Score=36.41 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=44.5
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETF 123 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~F 123 (340)
..-+..++.|+..|.+.-.+....+.+|++....++.++.+....+....++.++.-++.+.+....-.+..+..-|++-
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q 121 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQ 121 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666566666666666666666665555555555555555555555555544444444444444
Q ss_pred HHH
Q 019459 124 KRQ 126 (340)
Q Consensus 124 Kk~ 126 (340)
...
T Consensus 122 ~~~ 124 (314)
T PF04111_consen 122 YEY 124 (314)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 99
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=87.10 E-value=6.1 Score=44.65 Aligned_cols=61 Identities=20% Similarity=0.408 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCC--HHHHHHHHHHHHHHhhccccHHHHHHHHHHhhCCCChhHHHHHHHhhccc
Q 019459 277 KEFFRQARSRLS--YEQFSAFLASIKELNAQKQTREETLRKAEEIFGTDNKDLYLYFQGLLNRN 338 (340)
Q Consensus 277 KEFFRQARsRLS--YEQFsaFLANIKELNAhkQTREETL~KA~eIFG~eNkDLY~~FegLL~R~ 338 (340)
--|.-.+|.|+. .|+|-.||-..+-.---..+=.|....+.++|. +++|||.+|..+|--|
T Consensus 273 I~~vnkVK~r~~~~pe~y~~fl~~Lrtyq~~qr~i~ev~~~Vt~lfa-~~PdLleeFk~FLPd~ 335 (1163)
T COG5602 273 IIFVNKVKVRFQNNPEMYYDFLDSLRTYQMKQRSIQEVYARVTKLFA-EAPDLLEEFKEFLPDS 335 (1163)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhccHHHHHHHHHHHHh-hChHHHHHHHHhCccc
Confidence 457777899987 599999999998876666677889999999997 5899999999998544
No 100
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=87.01 E-value=8.9 Score=41.05 Aligned_cols=46 Identities=22% Similarity=0.351 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHhhhHHHHH
Q 019459 76 SHVQKVYQEADSKLKIFIDDNAKLA---KERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 76 ~~le~~L~e~~~rl~~a~de~~kL~---~E~~sLa~TvKKL~RDvaKLE 121 (340)
..|..++.++.+|+..-.++...|. .|++.+...+|+++.++..++
T Consensus 209 ~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~ 257 (546)
T PF07888_consen 209 ESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLE 257 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554442 344555555566665555555
No 101
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=87.00 E-value=13 Score=42.36 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 019459 98 KLAKERDSLAMTARNLSRDLAKLETFKRQLMQ 129 (340)
Q Consensus 98 kL~~E~~sLa~TvKKL~RDvaKLE~FKk~Lmq 129 (340)
.|......+...++++.+++.++..=...+.+
T Consensus 450 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1163)
T COG1196 450 ELEEQLEELRDRLKELERELAELQEELQRLEK 481 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666666666665554444443
No 102
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=86.96 E-value=6.8 Score=41.22 Aligned_cols=76 Identities=18% Similarity=0.163 Sum_probs=58.6
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLK-IFIDDNAKLAKERDSLAMTARNLSRDLA 118 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~-~a~de~~kL~~E~~sLa~TvKKL~RDva 118 (340)
+..+|..|+.|+..|..+=..=..+...|++|-..++..++.+-+.-+ ...+|+..|.+|+..|...+-.|.+.|.
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777777777776666666777899999999988888775544 4455889999999999998888877553
No 103
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=86.95 E-value=5.5 Score=44.09 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 019459 79 QKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQS 130 (340)
Q Consensus 79 e~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqS 130 (340)
|.-|+.+-..+-+|+|+++.|..|-+++.+.+-.+++|=.||-+|+-.|-+-
T Consensus 201 dErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e 252 (916)
T KOG0249|consen 201 DERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGE 252 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3445555666678999999999999999999999999988888888766553
No 104
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=86.78 E-value=27 Score=32.61 Aligned_cols=87 Identities=18% Similarity=0.231 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019459 32 LDLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTAR 111 (340)
Q Consensus 32 LdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvK 111 (340)
|+|..+...+||......||+....|...|.+..+.|.++..+=-..+. ++..+|...+..-..|...|-.+-..+.
T Consensus 123 LeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~---~~~~~L~~Le~~W~~~v~kn~eie~a~~ 199 (221)
T PF05700_consen 123 LELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQE---EAGEELRYLEQRWKELVSKNLEIEVACE 199 (221)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888899999999999999999999999999999998764332222 2333444433333445555555555555
Q ss_pred HHhhhHHHHH
Q 019459 112 NLSRDLAKLE 121 (340)
Q Consensus 112 KL~RDvaKLE 121 (340)
+|.++|..|.
T Consensus 200 ~Le~ei~~l~ 209 (221)
T PF05700_consen 200 ELEQEIEQLK 209 (221)
T ss_pred HHHHHHHHHH
Confidence 5554444443
No 105
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=86.75 E-value=12 Score=34.77 Aligned_cols=81 Identities=16% Similarity=0.265 Sum_probs=55.2
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHH
Q 019459 41 MAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFI--------DDNAKLAKERDSLAMTARN 112 (340)
Q Consensus 41 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~--------de~~kL~~E~~sLa~TvKK 112 (340)
.-+.--+.+...|++.||.+|-.....+.+++.++-..|.+|.-+.+.+.+-. .|-.+|+.+-+.+...+..
T Consensus 57 ~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~ 136 (194)
T PF15619_consen 57 AELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQE 136 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH
Confidence 34555677888999999999999888999999999988888888887776622 2334444444444444444
Q ss_pred HhhhHHHHH
Q 019459 113 LSRDLAKLE 121 (340)
Q Consensus 113 L~RDvaKLE 121 (340)
-.+.+..||
T Consensus 137 ~~~ki~~Le 145 (194)
T PF15619_consen 137 KEKKIQELE 145 (194)
T ss_pred HHHHHHHHH
Confidence 444444443
No 106
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=86.48 E-value=5.5 Score=39.84 Aligned_cols=69 Identities=22% Similarity=0.331 Sum_probs=46.2
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019459 41 MAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 41 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKL 120 (340)
.-+.+.|..|=.|+.+||++|+.-.+....-+..+..=+ ..+..||..|- +||.+++++-
T Consensus 225 e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~ee-----------------k~ireEN~rLq---r~L~~E~err 284 (310)
T PF09755_consen 225 ERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEE-----------------KEIREENRRLQ---RKLQREVERR 284 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHH---HHHHHHHHHH
Confidence 446777889999999999998855444444444443333 33444444443 4788999999
Q ss_pred HHHHHHHHh
Q 019459 121 ETFKRQLMQ 129 (340)
Q Consensus 121 E~FKk~Lmq 129 (340)
|++=|+|--
T Consensus 285 eal~R~lse 293 (310)
T PF09755_consen 285 EALCRHLSE 293 (310)
T ss_pred HHHHHHHHH
Confidence 999888754
No 107
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=86.45 E-value=3.4 Score=38.93 Aligned_cols=35 Identities=34% Similarity=0.534 Sum_probs=31.6
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLS 76 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~ 76 (340)
-+.+-+.++|.||..||+-|+-|++|..||..|+-
T Consensus 48 elr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLG 82 (208)
T KOG4010|consen 48 ELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLG 82 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46778899999999999999999999999999875
No 108
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=86.39 E-value=29 Score=36.59 Aligned_cols=77 Identities=26% Similarity=0.353 Sum_probs=43.5
Q ss_pred HHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019459 40 SMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAK 119 (340)
Q Consensus 40 s~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaK 119 (340)
.-|.+--+..|.+||.+||..|+--.....+ ++-+-.+|....-+||..| -+||.+.|.|
T Consensus 248 a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~e-----------------k~~qy~~Ee~~~reen~rl---QrkL~~e~er 307 (552)
T KOG2129|consen 248 AAAEKLHIDKLQAEVERLRTYLSRAQKSYQE-----------------KLMQYRAEEVDHREENERL---QRKLINELER 307 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHhhHHHHHHHH---HHHHHHHHHH
Confidence 3456666778888999888887533222222 2222222333333333333 2578888888
Q ss_pred HHHHHHHHHh---hccccCC
Q 019459 120 LETFKRQLMQ---SLNDDNS 136 (340)
Q Consensus 120 LE~FKk~Lmq---SLqeD~~ 136 (340)
=|++-|+|-. ||+-|++
T Consensus 308 Realcr~lsEsesslemdee 327 (552)
T KOG2129|consen 308 REALCRMLSESESSLEMDEE 327 (552)
T ss_pred HHHHHHHhhhhhHHHHHHHH
Confidence 8888888754 3444444
No 109
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=86.35 E-value=19 Score=32.03 Aligned_cols=84 Identities=13% Similarity=0.290 Sum_probs=70.2
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019459 48 SKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQL 127 (340)
Q Consensus 48 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~L 127 (340)
-.|.-|...|..++.||...+..|+.++..-=..|.-...+|.....+...|..+-...-..+.++..++.++..=+..+
T Consensus 45 eqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~ 124 (177)
T PF13870_consen 45 EQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKL 124 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777889999999999999999999999888889999999999999998888888888888888888887776655555
Q ss_pred Hhhc
Q 019459 128 MQSL 131 (340)
Q Consensus 128 mqSL 131 (340)
-..+
T Consensus 125 ~~~~ 128 (177)
T PF13870_consen 125 RKQN 128 (177)
T ss_pred HHHH
Confidence 4433
No 110
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=86.26 E-value=18 Score=31.49 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 57 MRQMLYEKDRLICELEERLSHVQKVYQEADSKL 89 (340)
Q Consensus 57 LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl 89 (340)
|-..|..++-.+..|+.+++.|+.+-..+++-+
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Ei 53 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEI 53 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444555555554444444444333
No 111
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=86.18 E-value=4.5 Score=40.40 Aligned_cols=84 Identities=18% Similarity=0.230 Sum_probs=65.9
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhH---
Q 019459 41 MAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDL--- 117 (340)
Q Consensus 41 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDv--- 117 (340)
|..++|..+||.-|.+= -.|+...+..|.+..+.++.-+. |+..-.|.++||+.-|.-|-.-|+|+.-||
T Consensus 1 ~~~k~~~~~~~~~i~k~---nee~~~~~~~~~k~~e~~qkl~s----r~~~~~ekke~i~r~n~k~~d~v~~~~~~~~~~ 73 (359)
T KOG4398|consen 1 MSCKMRIEQLKQTICKG---NEEMEKNSEGLLKTKEKNQKLYS----RAQRHQEKKEKIQRHNRKLGDLVEKKTIDLRSH 73 (359)
T ss_pred CchhHHHHHHHHHHhcC---cHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHH
Confidence 34567777887766644 45666777788877776555443 888888899999999999999999998775
Q ss_pred -HHHHHHHHHHHhhc
Q 019459 118 -AKLETFKRQLMQSL 131 (340)
Q Consensus 118 -aKLE~FKk~LmqSL 131 (340)
.||+.++++-++-|
T Consensus 74 ~erl~~lr~shi~el 88 (359)
T KOG4398|consen 74 YERLANLRRSHILEL 88 (359)
T ss_pred HHHHHHHHHHHHHHH
Confidence 79999999988876
No 112
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=86.10 E-value=7.2 Score=44.61 Aligned_cols=88 Identities=22% Similarity=0.300 Sum_probs=46.8
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
.+...+..||.|+.+|..++-+=..+..+.++.+..++..+.+...++.+..-.+.++--|-..|.+|.--..-|+.+|+
T Consensus 658 s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~ 737 (1074)
T KOG0250|consen 658 SFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLE 737 (1074)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhH
Confidence 34455566666666666655555555555555555555555555555555555555555555555554223333444444
Q ss_pred HHHHHHHh
Q 019459 122 TFKRQLMQ 129 (340)
Q Consensus 122 ~FKk~Lmq 129 (340)
...+.+|.
T Consensus 738 ~l~~ei~~ 745 (1074)
T KOG0250|consen 738 DLAREIKK 745 (1074)
T ss_pred HHHHHHHH
Confidence 44443333
No 113
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=86.05 E-value=11 Score=37.94 Aligned_cols=42 Identities=21% Similarity=0.442 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019459 78 VQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAK 119 (340)
Q Consensus 78 le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaK 119 (340)
+.....+..--+...+||++.|..|||....-|-+||..+.-
T Consensus 138 ~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~ 179 (319)
T PF09789_consen 138 LREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNY 179 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445566778899999999999999999999988754
No 114
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=85.72 E-value=23 Score=32.93 Aligned_cols=83 Identities=20% Similarity=0.296 Sum_probs=51.9
Q ss_pred HhhhhHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRL---ICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~---i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
=+.+++.|+..|+.+|..=+.. ...+..|+..++..|.+..-.-..-.+.-.+|.+||+.|-......-.||..==.
T Consensus 63 pL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~ 142 (201)
T PF13851_consen 63 PLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTG 142 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777777643322 2234555555555555555555555555566888888888777777777776666
Q ss_pred HHHHHH
Q 019459 123 FKRQLM 128 (340)
Q Consensus 123 FKk~Lm 128 (340)
||-.|+
T Consensus 143 ~kn~lL 148 (201)
T PF13851_consen 143 LKNLLL 148 (201)
T ss_pred HHHHHH
Confidence 666554
No 115
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=85.45 E-value=16 Score=28.68 Aligned_cols=80 Identities=18% Similarity=0.289 Sum_probs=43.3
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019459 43 IASRVSKLETETGTMRQMLYEKD-----RLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDL 117 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd-----~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDv 117 (340)
+..++..|+.+...+...+.... ..+...+.-+..|+..+......+ ..+.++-..+-..+....+++
T Consensus 17 ~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~-------~~~~~~~~~~r~~l~~a~~~~ 89 (123)
T PF02050_consen 17 AEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQEL-------ERLEQEVEQAREELQEARRER 89 (123)
T ss_dssp HHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666665555555555 444444455555555444444444 346666666666777777777
Q ss_pred HHHHHHHHHHHh
Q 019459 118 AKLETFKRQLMQ 129 (340)
Q Consensus 118 aKLE~FKk~Lmq 129 (340)
.++|.++..-..
T Consensus 90 k~~e~L~e~~~~ 101 (123)
T PF02050_consen 90 KKLEKLKERRRE 101 (123)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777776654433
No 116
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=85.39 E-value=12 Score=35.18 Aligned_cols=65 Identities=22% Similarity=0.293 Sum_probs=33.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019459 49 KLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNL 113 (340)
Q Consensus 49 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL 113 (340)
.|+.|+..||.-+..=.+....|..+...+|.+-+-..+++..-.++|.||.-|.+-|....+-|
T Consensus 64 ~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 64 ALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555554444444433
No 117
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=85.38 E-value=3.8 Score=39.05 Aligned_cols=71 Identities=18% Similarity=0.315 Sum_probs=39.7
Q ss_pred HHHHhhhhHh------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019459 43 IASRVSKLET------ETGTMRQMLYEK---DRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNL 113 (340)
Q Consensus 43 ~atRVs~LE~------E~~~LR~~laEK---d~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL 113 (340)
|..+.-.|++ +...+|.++.-. .+....+.+....|+.+|+.-...| +++++.++.|-.++..+
T Consensus 119 ll~~l~~l~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~L-------e~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 119 LLRELATLRANEKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKL-------EKAQKKVDALKKQSEGL 191 (216)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHc
Confidence 3444455555 555555555431 2334444455555555555555555 44667777777777777
Q ss_pred hhhHHHH
Q 019459 114 SRDLAKL 120 (340)
Q Consensus 114 ~RDvaKL 120 (340)
++..++|
T Consensus 192 ~~EydrL 198 (216)
T KOG1962|consen 192 QDEYDRL 198 (216)
T ss_pred ccHHHHH
Confidence 7777665
No 118
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=85.36 E-value=14 Score=30.36 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019459 52 TETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAK 119 (340)
Q Consensus 52 ~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaK 119 (340)
.|+.++-+.-.+-...+..+...+..+|.-..-.......|..+.-.+-+-+++|.+-+|+|+.-+.|
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~K 70 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSK 70 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444445555555555555555555555555555555555555555555544
No 119
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=84.98 E-value=18 Score=36.26 Aligned_cols=94 Identities=23% Similarity=0.349 Sum_probs=54.1
Q ss_pred HHHHHHHHhhhhHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------hHHH
Q 019459 39 TSMAIASRVSKLETETGTMR-QMLYEKDRLICELEERLSHVQKVYQEADSKLKI----------------------FIDD 95 (340)
Q Consensus 39 ts~A~atRVs~LE~E~~~LR-~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~----------------------a~de 95 (340)
+++.+..|+..|..|-..|= .--.|-..+...|+.|+.+|-.+-.+....|.+ -..+
T Consensus 78 isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~ 157 (310)
T PF09755_consen 78 ISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEE 157 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 56777777777766665552 333334444455555544444333333222221 1112
Q ss_pred HHHHHHHHHHHHHH--------HHHHhhhHHHHHHHHHHHHhhcc
Q 019459 96 NAKLAKERDSLAMT--------ARNLSRDLAKLETFKRQLMQSLN 132 (340)
Q Consensus 96 ~~kL~~E~~sLa~T--------vKKL~RDvaKLE~FKk~LmqSLq 132 (340)
.++|.+|+--|-+| |.+|.+.++||++=||.|=..|.
T Consensus 158 le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 158 LERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 23566666666555 67899999999999998877653
No 120
>PRK04863 mukB cell division protein MukB; Provisional
Probab=84.87 E-value=22 Score=42.23 Aligned_cols=78 Identities=13% Similarity=0.130 Sum_probs=39.3
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019459 41 MAIASRVSKLETETGTMRQMLYEKDR------LICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLS 114 (340)
Q Consensus 41 ~A~atRVs~LE~E~~~LR~~laEKd~------~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~ 114 (340)
.-|..++.+||.++...+..+..+.+ .+..+...+..|+..+.+...++..+.++...+.+|...+...++.|.
T Consensus 317 ~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLq 396 (1486)
T PRK04863 317 AELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELK 396 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777787777777666554433 233334444444444444444444444444444444444444444443
Q ss_pred hhHH
Q 019459 115 RDLA 118 (340)
Q Consensus 115 RDva 118 (340)
..++
T Consensus 397 eqLa 400 (1486)
T PRK04863 397 SQLA 400 (1486)
T ss_pred HHHH
Confidence 3333
No 121
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=84.85 E-value=13 Score=39.97 Aligned_cols=83 Identities=23% Similarity=0.265 Sum_probs=48.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHH
Q 019459 49 KLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLS---RDLAKLETFKR 125 (340)
Q Consensus 49 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~---RDvaKLE~FKk 125 (340)
.-|.|+..|..+|.+=...|.+++..+..+...+.+....+.....++..|.++......++.=|. ..|+||+.+-.
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~ 404 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVE 404 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 334555666666666666666666666666666666666666666666666666655444443332 45677777666
Q ss_pred HHHhhc
Q 019459 126 QLMQSL 131 (340)
Q Consensus 126 ~LmqSL 131 (340)
.-++.|
T Consensus 405 ~s~~rl 410 (594)
T PF05667_consen 405 ASEQRL 410 (594)
T ss_pred HHHHHH
Confidence 555544
No 122
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=84.66 E-value=9.3 Score=33.97 Aligned_cols=54 Identities=13% Similarity=0.048 Sum_probs=35.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019459 51 ETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERD 104 (340)
Q Consensus 51 E~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~ 104 (340)
-.+...||..+......+...+..+..+..+|..+.+....-...++.|-.+..
T Consensus 18 ~~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~ 71 (135)
T TIGR03495 18 SQRLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLA 71 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777777777777777666655554455555544433
No 123
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=84.59 E-value=15 Score=36.21 Aligned_cols=70 Identities=23% Similarity=0.268 Sum_probs=39.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019459 51 ETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 51 E~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKL 120 (340)
|.|....+.+|..+..+...+++.+...|..+.++..|+...-+....|..|+..|..+|..+.--|.|+
T Consensus 192 e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 192 EEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444445555555555555555555555555555555555555556677777777777666555443
No 124
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=84.55 E-value=19 Score=28.73 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019459 94 DDNAKLAKERDSLAMTARNL 113 (340)
Q Consensus 94 de~~kL~~E~~sLa~TvKKL 113 (340)
++|.+|..|+.....-++.|
T Consensus 46 ~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 46 EENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555444444443
No 125
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=84.54 E-value=5.5 Score=34.25 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019459 68 ICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNL 113 (340)
Q Consensus 68 i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL 113 (340)
+.+|++++..+-.++.+....+...++||..|.-||+.|-.-+.++
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555666666667777777777777766555443
No 126
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=84.48 E-value=13 Score=35.44 Aligned_cols=91 Identities=15% Similarity=0.168 Sum_probs=63.1
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
|..-|..+|.|...|..=-.|++.+..|=... ..+|++.++-++..+.....+..||+.....+.+|..++.+|..
T Consensus 20 i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h----~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~ 95 (230)
T PF10146_consen 20 ILQEVESLENEEKCLEEYRKEMEELLQERMAH----VEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKD 95 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666655555555555444333333 33566777777777777778888999999999999999999998
Q ss_pred HHHHHHhh-ccccCCC
Q 019459 123 FKRQLMQS-LNDDNSS 137 (340)
Q Consensus 123 FKk~LmqS-LqeD~~~ 137 (340)
+=-.+..+ |.-+...
T Consensus 96 ~in~~R~e~lgl~~Lp 111 (230)
T PF10146_consen 96 EINELRKEYLGLEPLP 111 (230)
T ss_pred HHHHHHHHHcCCCCCC
Confidence 88888888 7666554
No 127
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=84.46 E-value=20 Score=33.25 Aligned_cols=73 Identities=21% Similarity=0.248 Sum_probs=34.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 49 KLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 49 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
++-.+..+|-.++.++......+...+..||.-+.+....+...-.+++..-+|...|..-+.+|+.++...|
T Consensus 107 ~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 107 KLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555566655333333333333333333333333333333344444555556566666666665554
No 128
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=84.41 E-value=17 Score=36.46 Aligned_cols=98 Identities=18% Similarity=0.210 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019459 31 QLDLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHV----QKVYQEADSKLKIFIDDNAKLAKERDSL 106 (340)
Q Consensus 31 QLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~l----e~~L~e~~~rl~~a~de~~kL~~E~~sL 106 (340)
.+.+-..|.--++-.|+..||.|-..||.....=+.....++++-..| =.+|.+|+..+...-+|.++-.+|+...
T Consensus 153 ~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQ 232 (306)
T PF04849_consen 153 SLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQ 232 (306)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHH
Confidence 334445567778899999999999999988776665544554443333 2456677777766666666666666666
Q ss_pred HHHHHHHhhhHHHHHHHHHHHH
Q 019459 107 AMTARNLSRDLAKLETFKRQLM 128 (340)
Q Consensus 107 a~TvKKL~RDvaKLE~FKk~Lm 128 (340)
-..|-.|...|.+|+.=-|++|
T Consensus 233 QEEIt~LlsqivdlQ~r~k~~~ 254 (306)
T PF04849_consen 233 QEEITSLLSQIVDLQQRCKQLA 254 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666665555554
No 129
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=84.09 E-value=11 Score=37.41 Aligned_cols=68 Identities=22% Similarity=0.325 Sum_probs=41.4
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHh
Q 019459 47 VSKLETETGTMRQMLYEKDRLICELEERLSHVQK-------VYQEADSKLKIFIDDNAKLAK---ERDSLAMTARNLS 114 (340)
Q Consensus 47 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~-------~L~e~~~rl~~a~de~~kL~~---E~~sLa~TvKKL~ 114 (340)
++.||.+.+.+++.-..-..-|.+|+.+-..||+ .|.+-.+||++|++-|+=|.. |+.+|..-|.+|.
T Consensus 93 ~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLk 170 (333)
T KOG1853|consen 93 ESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLK 170 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4455555554444433333444444444444443 367788999999999988865 5667777766663
No 130
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.08 E-value=23 Score=40.98 Aligned_cols=62 Identities=15% Similarity=0.121 Sum_probs=39.3
Q ss_pred HHHHHHHH-HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 019459 33 DLARKITS-MAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFID 94 (340)
Q Consensus 33 dlArkIts-~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~d 94 (340)
.++.+|.. -.|..++..|..++..++..+.+.+..+..|+.++..+...+.+...+....++
T Consensus 875 kl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 937 (1311)
T TIGR00606 875 QIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNK 937 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333 345666667777777777777777777777777777777777665555544443
No 131
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=84.06 E-value=14 Score=40.16 Aligned_cols=72 Identities=19% Similarity=0.198 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019459 55 GTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQ 126 (340)
Q Consensus 55 ~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~ 126 (340)
..+-..|..||++|..|-.-|..++.++++........+..-++..+.++.-..++|+.-..-+--|..|+-
T Consensus 281 ~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~E 352 (629)
T KOG0963|consen 281 DALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKE 352 (629)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHH
Confidence 344455666666666666666666666666666666655555555555555555555444333444555554
No 132
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=84.06 E-value=5.3 Score=38.30 Aligned_cols=65 Identities=15% Similarity=0.280 Sum_probs=33.5
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKL 120 (340)
+.-.||.+||..+. -+.....+|+.++..|+.++.+.+..+.. +..|-+.|..--|.|..||+++
T Consensus 37 ~~~~r~~~le~~~~-------~~~~~~~~l~~ql~~lq~ev~~LrG~~E~-------~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 37 SVEDRVTQLERISN-------AHSQLLTQLQQQLSDNQSDIDSLRGQIQE-------NQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred chHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555544 44444555555555555555555444432 4444444555555566666653
No 133
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=83.94 E-value=4.7 Score=42.41 Aligned_cols=51 Identities=10% Similarity=0.092 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019459 59 QMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMT 109 (340)
Q Consensus 59 ~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~T 109 (340)
.+|+|-.....+|+++++.|..++++....+...++..++|..|+..|..+
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666665544444444433333333344444444333
No 134
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=83.92 E-value=12 Score=37.81 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=17.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhc
Q 019459 107 AMTARNLSRDLAKLETFKRQLMQSL 131 (340)
Q Consensus 107 a~TvKKL~RDvaKLE~FKk~LmqSL 131 (340)
-.+|+.+-+|+.+|..=||+|-+|+
T Consensus 84 E~~V~~it~dIk~LD~AKrNLT~SI 108 (383)
T PF04100_consen 84 EQMVQEITRDIKQLDNAKRNLTQSI 108 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777776665
No 135
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=83.64 E-value=11 Score=40.54 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=20.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhccccCC
Q 019459 107 AMTARNLSRDLAKLETFKRQLMQSLNDDNS 136 (340)
Q Consensus 107 a~TvKKL~RDvaKLE~FKk~LmqSLqeD~~ 136 (340)
......|.||++-.+..=..|++.+++-.-
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~ 404 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYRQAAS 404 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778887777777777877766543
No 136
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=83.62 E-value=20 Score=34.27 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=29.3
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKL 89 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl 89 (340)
..|..||.|+..|+.....+...+..|+.....+-..+.....+.
T Consensus 68 ~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~ 112 (256)
T PF14932_consen 68 EDLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKE 112 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 556788888888877777777777776665555554444444443
No 137
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=83.61 E-value=20 Score=37.56 Aligned_cols=46 Identities=20% Similarity=0.350 Sum_probs=32.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019459 88 KLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSLND 133 (340)
Q Consensus 88 rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 133 (340)
-|+...+||..|.+|+-.+..|+|-|.+|+-.+|+.+=.+.+-+.+
T Consensus 56 ~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~ 101 (459)
T KOG0288|consen 56 ELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRE 101 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666677777777788888888888888877666665543
No 138
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=83.52 E-value=25 Score=35.11 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=20.3
Q ss_pred CchhhhHHHHHHHHHHHHHHhhhh---HhHHHHHHHHHHH
Q 019459 27 DPYDQLDLARKITSMAIASRVSKL---ETETGTMRQMLYE 63 (340)
Q Consensus 27 DPyEQLdlArkIts~A~atRVs~L---E~E~~~LR~~laE 63 (340)
-|..|=+|+.|=.-.=++--+.+| |.||..||.+|+-
T Consensus 61 TPLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~R 100 (305)
T PF15290_consen 61 TPLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLAR 100 (305)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 367788888776554444333333 4455555555544
No 139
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=83.49 E-value=31 Score=32.48 Aligned_cols=8 Identities=38% Similarity=0.426 Sum_probs=3.5
Q ss_pred HHHHHHhc
Q 019459 279 FFRQARSR 286 (340)
Q Consensus 279 FFRQARsR 286 (340)
-|+.|+..
T Consensus 228 ai~ia~kq 235 (251)
T PF11932_consen 228 AIRIARKQ 235 (251)
T ss_pred HHHHHhCC
Confidence 34444443
No 140
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=83.43 E-value=19 Score=35.48 Aligned_cols=85 Identities=15% Similarity=0.245 Sum_probs=52.9
Q ss_pred hcCCCCchhhhHHHHHHHHH---H------HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019459 22 AVIPTDPYDQLDLARKITSM---A------IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIF 92 (340)
Q Consensus 22 svLP~DPyEQLdlArkIts~---A------~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a 92 (340)
.||=+ ..+.+--|+++... + .-.+|...+.|...+...|.++...+.++++|+ -++.+||..+
T Consensus 169 ~WLR~-~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i-------~e~~~rl~~l 240 (269)
T PF05278_consen 169 DWLRS-KLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERI-------TEMKGRLGEL 240 (269)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 44433 45555556555432 1 122334444455555555555555555555555 4888889998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 019459 93 IDDNAKLAKERDSLAMTARNLS 114 (340)
Q Consensus 93 ~de~~kL~~E~~sLa~TvKKL~ 114 (340)
..+-.+|.+.-..+...|+|..
T Consensus 241 ~~~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 241 EMESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 8888999998888888888874
No 141
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=83.34 E-value=36 Score=32.53 Aligned_cols=65 Identities=18% Similarity=0.324 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 019459 55 GTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETF 123 (340)
Q Consensus 55 ~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~F 123 (340)
+.||.++.+=..+..+|.+.++.+|. -...|..-..|...|..||.+++.-++-.+-|+..||+.
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~----ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~i 68 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLEN----EEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENI 68 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555444444444444443333 223444444555555555555555555555555555543
No 142
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=83.12 E-value=29 Score=29.83 Aligned_cols=81 Identities=21% Similarity=0.260 Sum_probs=42.2
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKR 125 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk 125 (340)
.+..|++|+.+++..+.+-...+..+++-+...-....++..+..+-+--.+...++-..|-..+..+...+..|+.-..
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~ 83 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAE 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666566655554443333333333333333333444444444433333
Q ss_pred H
Q 019459 126 Q 126 (340)
Q Consensus 126 ~ 126 (340)
+
T Consensus 84 ~ 84 (132)
T PF07926_consen 84 S 84 (132)
T ss_pred H
Confidence 3
No 143
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=82.74 E-value=6.6 Score=39.38 Aligned_cols=76 Identities=25% Similarity=0.291 Sum_probs=56.6
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
.-+..+|..|+..||++|.|=.--|.-|+++++...........+. ..+|.++|..+-..+-.+.+-|.|||.-+-
T Consensus 78 re~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~--~~~ere~lV~qLEk~~~q~~qLe~d~qs~l 153 (319)
T PF09789_consen 78 REQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARH--FPHEREDLVEQLEKLREQIEQLERDLQSLL 153 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999999999999999999998877666555443 226666666666666666666666665443
No 144
>PRK04863 mukB cell division protein MukB; Provisional
Probab=82.73 E-value=18 Score=42.87 Aligned_cols=82 Identities=13% Similarity=0.208 Sum_probs=44.4
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFK 124 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FK 124 (340)
..+..++.++..|..++.+....+.++++++..++..+.++..++.....+...+..+.+.+...+..+...+++|+.-|
T Consensus 348 ~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~ 427 (1486)
T PRK04863 348 EKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAK 427 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555444445555555555555666666666666554
Q ss_pred HH
Q 019459 125 RQ 126 (340)
Q Consensus 125 k~ 126 (340)
..
T Consensus 428 ~~ 429 (1486)
T PRK04863 428 QL 429 (1486)
T ss_pred HH
Confidence 43
No 145
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=82.30 E-value=11 Score=35.70 Aligned_cols=71 Identities=18% Similarity=0.256 Sum_probs=49.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 51 ETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 51 E~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
.+||-.||.+|.+-.........++..|..++..-+..|.....|......|...|-..|-+|..++++|.
T Consensus 30 ~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr 100 (202)
T PF06818_consen 30 DSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELR 100 (202)
T ss_pred HhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHH
Confidence 45667777777766666666666666666666666666666666666777777777777777777777664
No 146
>PLN03188 kinesin-12 family protein; Provisional
Probab=82.25 E-value=15 Score=42.91 Aligned_cols=82 Identities=20% Similarity=0.255 Sum_probs=53.3
Q ss_pred HHHHHHhhhhHhH-----------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019459 41 MAIASRVSKLETE-----------TGTMRQMLYEKD---RLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSL 106 (340)
Q Consensus 41 ~A~atRVs~LE~E-----------~~~LR~~laEKd---~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sL 106 (340)
+|+|.-++.|-.| -..|+.||-+-. +...||==|+-++|.++..+..|...|++|++||-|+
T Consensus 1158 ~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~---- 1233 (1320)
T PLN03188 1158 NALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQ---- 1233 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 5666666666555 556666664433 3445677777777777777777777777777776654
Q ss_pred HHHHHHHhhhH-HHHHHHHHHHHh
Q 019459 107 AMTARNLSRDL-AKLETFKRQLMQ 129 (340)
Q Consensus 107 a~TvKKL~RDv-aKLE~FKk~Lmq 129 (340)
+.||.|.- --+.++|..|-.
T Consensus 1234 ---~~klkrkh~~e~~t~~q~~ae 1254 (1320)
T PLN03188 1234 ---IDKLKRKHENEISTLNQLVAE 1254 (1320)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhh
Confidence 45566665 567777776644
No 147
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=82.20 E-value=21 Score=31.64 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019459 71 LEERLSHVQKVYQEADSKL 89 (340)
Q Consensus 71 Lq~r~~~le~~L~e~~~rl 89 (340)
|...+..|+.++....+||
T Consensus 114 l~~~i~~l~~e~~~l~~kL 132 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKL 132 (169)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344
No 148
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=82.07 E-value=36 Score=36.92 Aligned_cols=93 Identities=19% Similarity=0.185 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHhHHHHHHHHH
Q 019459 31 QLDLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEAD---------SKLKIFIDDNAKLAK 101 (340)
Q Consensus 31 QLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~---------~rl~~a~de~~kL~~ 101 (340)
|....-|=.+.-|.-||..|-.++..|+.....--+.|.+|+..+..|..++.... ..-.+..++.+.|.+
T Consensus 15 ~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~k 94 (617)
T PF15070_consen 15 QYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRK 94 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHH
Confidence 34444444445578899999999999988776666777777777777766655211 011122335566888
Q ss_pred HHHHHHHHHHHHhhhHHHHHHH
Q 019459 102 ERDSLAMTARNLSRDLAKLETF 123 (340)
Q Consensus 102 E~~sLa~TvKKL~RDvaKLE~F 123 (340)
|...|...++...+|..-|..+
T Consensus 95 ElE~L~~qlqaqv~~ne~Ls~L 116 (617)
T PF15070_consen 95 ELESLEEQLQAQVENNEQLSRL 116 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777776665554443
No 149
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=81.94 E-value=11 Score=35.49 Aligned_cols=79 Identities=20% Similarity=0.172 Sum_probs=54.7
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
+.+++...||+++.+++++.+...+-|+- ...-+.++..| +..|.++.++|....+-|.-+|+|++
T Consensus 78 ~~ks~~qeLe~~L~~~~qk~~tl~e~~en-------~K~~~e~tEer-------~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 78 DRKSVLQELESQLATGSQKKATLGESIEN-------RKAGREETEER-------TDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred HHHHHHHHHHHHHHHhhhhHhHHHHHHHH-------HHhhhhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67889999999999999998877664433 22222233333 33588888999888888888999987
Q ss_pred HHHHHHHhhcccc
Q 019459 122 TFKRQLMQSLNDD 134 (340)
Q Consensus 122 ~FKk~LmqSLqeD 134 (340)
--+-++..-+..+
T Consensus 144 e~dpqv~~k~~~~ 156 (203)
T KOG3433|consen 144 ETDPQVFEKKVHL 156 (203)
T ss_pred hcCHHHHHHHHHH
Confidence 6555554444333
No 150
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=81.88 E-value=16 Score=33.61 Aligned_cols=34 Identities=38% Similarity=0.572 Sum_probs=30.3
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERL 75 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~ 75 (340)
.+..-+.++|.||..||+-|+-|.++..+|+.|+
T Consensus 33 eLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 33 ELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3555678899999999999999999999999996
No 151
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=81.76 E-value=9.4 Score=31.42 Aligned_cols=64 Identities=14% Similarity=0.193 Sum_probs=46.3
Q ss_pred CCCCchhHHhcCCCCchhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 13 DFHLPDEVLAVIPTDPYDQLDLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQ 83 (340)
Q Consensus 13 ~f~Lp~eilsvLP~DPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 83 (340)
..+||++|...+ .++...+...|..--...|+.+...+.+.+.+-+....++.+++..|+.++.
T Consensus 56 ~~~lP~~l~~~~-------~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~ 119 (120)
T PF11740_consen 56 APDLPEALQDAL-------AELMARLWEAAQEEAEEELEAARAELEQERAAAEAELAEAEAQAEELEAELA 119 (120)
T ss_pred ccCCChhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566554422 4677788888888888888888888888888888888888887777776654
No 152
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=81.65 E-value=5 Score=30.85 Aligned_cols=35 Identities=9% Similarity=0.319 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019459 77 HVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLA 118 (340)
Q Consensus 77 ~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDva 118 (340)
.||..+......+.. +.+|+..|..+|-++++.|.
T Consensus 4 elEn~~~~~~~~i~t-------vk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 4 ELENELPRIESSINT-------VKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 333333344444555 44444444444444444443
No 153
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=81.65 E-value=28 Score=37.41 Aligned_cols=91 Identities=22% Similarity=0.282 Sum_probs=55.1
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------HHHHHHHHHHH-HHHHH
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIF--------------IDDNAKLAKER-DSLAM 108 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a--------------~de~~kL~~E~-~sLa~ 108 (340)
-.|.+.||+|+.-++.....-+..+..|......|..+|..+...|-+. ++|..-+.... ..+-.
T Consensus 147 ~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e 226 (546)
T KOG0977|consen 147 LSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEE 226 (546)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 3455666666666666666666666666666666666665555444332 22222222221 23446
Q ss_pred HHHHHhhhH--HHHHHHHHHHHhhcccc
Q 019459 109 TARNLSRDL--AKLETFKRQLMQSLNDD 134 (340)
Q Consensus 109 TvKKL~RDv--aKLE~FKk~LmqSLqeD 134 (340)
+.++..||. ..=+-||..|.++|+|=
T Consensus 227 ~~~~~~rd~t~~~r~~F~~eL~~Ai~ei 254 (546)
T KOG0977|consen 227 ERRKARRDTTADNREYFKNELALAIREI 254 (546)
T ss_pred HHHHHhhcccccchHHHHHHHHHHHHHH
Confidence 677888898 77899999999999653
No 154
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=81.51 E-value=7 Score=33.74 Aligned_cols=50 Identities=26% Similarity=0.355 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 019459 62 YEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSR 115 (340)
Q Consensus 62 aEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~R 115 (340)
.||.++|. +|-+|+..|.+..+|.....+||-||..||..|-+-+..|+-
T Consensus 56 EEKaRlIt----QVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMS 105 (120)
T KOG3650|consen 56 EEKARLIT----QVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMS 105 (120)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Confidence 56666664 577788889999999999999999999999999998887764
No 155
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.39 E-value=14 Score=36.25 Aligned_cols=61 Identities=20% Similarity=0.351 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 61 LYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 61 laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
+...|..|-++++.+..++.+|...+..+.-+......+.+|++.+-.-+|+|+.+++.|+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~ 93 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELK 93 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666665555555555555555555555555566666666666666666665553
No 156
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=81.34 E-value=13 Score=40.84 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=10.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Q 019459 87 SKLKIFIDDNAKLAKERDSLAMTA 110 (340)
Q Consensus 87 ~rl~~a~de~~kL~~E~~sLa~Tv 110 (340)
.|+..|.|.|++|.+-=+.+.+.+
T Consensus 600 eR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 600 ERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 157
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=81.12 E-value=16 Score=34.25 Aligned_cols=84 Identities=13% Similarity=0.179 Sum_probs=67.8
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKR 125 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk 125 (340)
+|..+|.++..|+.++..=- .+-.++-....++.-|.......+.|-.+...+-+..+.+++|...-|..++.++.
T Consensus 3 ~i~~~E~d~~~Le~~l~Kl~----K~~~~~~dag~~~~~a~~~F~~~l~d~~~~~~~De~i~~~l~kF~~~l~ei~~~~~ 78 (200)
T cd07638 3 ALEDVEGDVAELELKLDKLV----KLCIGMIDAGKAFCQANKQFMNGIRDLAQYSSKDAVIETSLTKFSDTLQEMINYHT 78 (200)
T ss_pred hHHHHHhhHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 57889999999998875433 33344555788888899999999999888877888899999999999999999998
Q ss_pred HHHhhccc
Q 019459 126 QLMQSLND 133 (340)
Q Consensus 126 ~LmqSLqe 133 (340)
.|+.-.+.
T Consensus 79 ~L~~q~~~ 86 (200)
T cd07638 79 ILFDQAQR 86 (200)
T ss_pred HHHHHHHH
Confidence 88875543
No 158
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=80.80 E-value=46 Score=31.73 Aligned_cols=42 Identities=29% Similarity=0.320 Sum_probs=20.4
Q ss_pred CCchhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 26 TDPYDQLDLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHV 78 (340)
Q Consensus 26 ~DPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~l 78 (340)
.||..+|+-+. -.++.+...+|+.+++=-.....|+.++..+
T Consensus 23 EDp~~~l~Q~i-----------rd~~~~l~~ar~~~A~~~a~~k~~e~~~~~~ 64 (225)
T COG1842 23 EDPEKMLEQAI-----------RDMESELAKARQALAQAIARQKQLERKLEEA 64 (225)
T ss_pred cCHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37776666653 3444555555554444433333333333333
No 159
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=80.68 E-value=33 Score=34.19 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=50.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH----HhHHHHHHHHHHHHHHHHHHHHH
Q 019459 49 KLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADS-----------KLK----IFIDDNAKLAKERDSLAMTARNL 113 (340)
Q Consensus 49 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~-----------rl~----~a~de~~kL~~E~~sLa~TvKKL 113 (340)
.|-+.+++++..|.+-.+.|.+|+++|..|..++..-.. .+. ...+-..+|++=.+.|+..-.+|
T Consensus 71 ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l 150 (301)
T PF06120_consen 71 QLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERL 150 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888888877732111 111 11222344444445577777777
Q ss_pred hhhHHHHHHHHHHH
Q 019459 114 SRDLAKLETFKRQL 127 (340)
Q Consensus 114 ~RDvaKLE~FKk~L 127 (340)
++.+.|+..--++|
T Consensus 151 ~q~~~k~~~~q~~l 164 (301)
T PF06120_consen 151 EQMQSKASETQATL 164 (301)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776655544
No 160
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=80.56 E-value=27 Score=34.81 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 019459 54 TGTMRQMLYEKDRLICELEER-------LSHVQKVYQEADSKLK 90 (340)
Q Consensus 54 ~~~LR~~laEKd~~i~~Lq~r-------~~~le~~L~e~~~rl~ 90 (340)
+..||++|.+....+++|..+ +-.++.++.+....|.
T Consensus 256 i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~ 299 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLN 299 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 344555555555555555443 3344444444444443
No 161
>PRK01156 chromosome segregation protein; Provisional
Probab=80.36 E-value=30 Score=38.02 Aligned_cols=45 Identities=13% Similarity=0.210 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019459 76 SHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 76 ~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKL 120 (340)
..++..+.....++.....+...|..+...|..+|.+|.+.+.++
T Consensus 677 ~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~ 721 (895)
T PRK01156 677 NDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDI 721 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333333333444444444444445555555555444444444433
No 162
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=80.31 E-value=11 Score=29.33 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhccccC
Q 019459 105 SLAMTARNLSRDLAKLETFKRQLMQSLNDDN 135 (340)
Q Consensus 105 sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~ 135 (340)
.|..+|-+.++++++|+.--+.|..-|.+-.
T Consensus 22 ~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 22 ELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3555666666667777666666666665543
No 163
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=80.06 E-value=13 Score=29.40 Aligned_cols=56 Identities=27% Similarity=0.404 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHH
Q 019459 65 DRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKL----ETFKRQL 127 (340)
Q Consensus 65 d~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKL----E~FKk~L 127 (340)
+..|..||.|+..+++ ++.....++..|..||+..+..+--...+..+| |++|+.|
T Consensus 4 ea~~~~Lr~rLd~~~r-------k~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTR-------KNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777666555 555556677779999999988888777776654 5666653
No 164
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=80.05 E-value=31 Score=37.58 Aligned_cols=80 Identities=21% Similarity=0.248 Sum_probs=57.8
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHHHHhhhHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLA-------KERDSLAMTARNLSRDLA 118 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~-------~E~~sLa~TvKKL~RDva 118 (340)
|=..|+.||.+||..+.+-|..|..++..++.-|.++..+-+++......+.=|. .+...|..-.|+|+.-|.
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~ 159 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVE 159 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678999999999999999999999999999999888888777666555544333 444555555555555555
Q ss_pred HHHHHHH
Q 019459 119 KLETFKR 125 (340)
Q Consensus 119 KLE~FKk 125 (340)
.|+...|
T Consensus 160 ~~q~~~R 166 (632)
T PF14817_consen 160 QLQDIQR 166 (632)
T ss_pred HHHHHHh
Confidence 5544433
No 165
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=80.03 E-value=12 Score=28.81 Aligned_cols=45 Identities=11% Similarity=0.243 Sum_probs=33.0
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKL 89 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl 89 (340)
.+|.+|.+++..|-.++..=...|..|+.-+..+..+-..++.||
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888887777777777777777766666666667666
No 166
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=79.96 E-value=48 Score=34.65 Aligned_cols=102 Identities=16% Similarity=0.230 Sum_probs=80.7
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------------
Q 019459 29 YDQLDLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFID-------------- 94 (340)
Q Consensus 29 yEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~d-------------- 94 (340)
-.||--=+-.+..|+..|+...+.=..+|--+|+.+.+.|++.+..|..++.+|.+=.+-|+.|.-
T Consensus 262 an~lr~Q~~~ve~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRle~Rt~RPnvELC 341 (421)
T KOG2685|consen 262 ANDLRTQADAVELAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRLENRTYRPNVELC 341 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHHHHcccCCchHHH
Confidence 345555566678899999999999999999999999999999999999999988766655554432
Q ss_pred ---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 019459 95 ---DNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQS 130 (340)
Q Consensus 95 ---e~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqS 130 (340)
-|-.|..|--.|-.||..|.-.|++=|.=++-|...
T Consensus 342 rD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~ 380 (421)
T KOG2685|consen 342 RDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVNH 380 (421)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 236788888888888888888888877766666653
No 167
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=79.77 E-value=14 Score=33.67 Aligned_cols=49 Identities=16% Similarity=0.235 Sum_probs=44.9
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
+.-|+..+|.+...|++.|..|.+.|...+..|..++..+.-+..|+.+
T Consensus 84 l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~ 132 (158)
T PF09486_consen 84 LEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDR 132 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999888887765
No 168
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=79.72 E-value=11 Score=41.90 Aligned_cols=111 Identities=22% Similarity=0.222 Sum_probs=66.7
Q ss_pred hhHHhcCCCCchhhhHHHHHHH--HHHHHHHhhhhHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 18 DEVLAVIPTDPYDQLDLARKIT--SMAIASRVSKLETETGT-------MRQMLYEKDRLICELEERLSHVQKVYQEADSK 88 (340)
Q Consensus 18 ~eilsvLP~DPyEQLdlArkIt--s~A~atRVs~LE~E~~~-------LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~r 88 (340)
.|.+.+ +-|||+||-.=. +++ +...-.+|+|.+. -++...+..+.+..|...+..+-.+|+.+++|
T Consensus 111 eekn~s----lqerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqr 185 (916)
T KOG0249|consen 111 EEKNRS----LQERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQR 185 (916)
T ss_pred HHhhhh----hhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445544 468999997754 444 4455555555432 12223334444455555555555667777777
Q ss_pred HHHhHHHHHHH--------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019459 89 LKIFIDDNAKL--------AKERDSLAMTARNLSRDLAKLETFKRQLMQSLND 133 (340)
Q Consensus 89 l~~a~de~~kL--------~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 133 (340)
++.-++-+..| +--..-+.++..+-||=..-|+.|||+|.+...+
T Consensus 186 eemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~ 238 (916)
T KOG0249|consen 186 EKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHD 238 (916)
T ss_pred HHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76665555433 3334445667777777788899999999876543
No 169
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=79.64 E-value=11 Score=36.29 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=33.5
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQ----EADSKLKI 91 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~----e~~~rl~~ 91 (340)
--.+.|.+++.|+..+..+|+.|.+||+.+-..|..|. .|+++|+.
T Consensus 68 eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta~fqA~qKLks 117 (272)
T KOG4552|consen 68 EQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTTACFQANQKLKS 117 (272)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888888888888888888777664 34455544
No 170
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=79.62 E-value=55 Score=31.53 Aligned_cols=57 Identities=16% Similarity=0.258 Sum_probs=37.4
Q ss_pred chhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 019459 28 PYDQLDLARKITSMAIASRVSKLETETGTMRQMLYEKD-----RLICELEERLSHVQKVYQE 84 (340)
Q Consensus 28 PyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd-----~~i~~Lq~r~~~le~~L~e 84 (340)
-.++|+-...-...++..++...+..+..|...+.... +.+...+.++..+...|..
T Consensus 148 ~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~~p~~~l~~~~~~Ld~l~~rL~~ 209 (319)
T PF02601_consen 148 LLQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRRLPERKLEQQQQRLDELKQRLKQ 209 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666777777888887777777777777655 3455555555555555444
No 171
>PRK12705 hypothetical protein; Provisional
Probab=79.43 E-value=25 Score=37.34 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=10.0
Q ss_pred HHHHHHHHhhccccC
Q 019459 121 ETFKRQLMQSLNDDN 135 (340)
Q Consensus 121 E~FKk~LmqSLqeD~ 135 (340)
|..|+.||..+.++-
T Consensus 141 ~eak~~l~~~~~~~~ 155 (508)
T PRK12705 141 EQARKLLLKLLDAEL 155 (508)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345888888776553
No 172
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=79.36 E-value=7.7 Score=28.34 Aligned_cols=39 Identities=15% Similarity=0.305 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 019459 78 VQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRD 116 (340)
Q Consensus 78 le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RD 116 (340)
||..+.-..+.......++..|.+||+.|.+.|..|..-
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444445555555667788899999998888888654
No 173
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=79.34 E-value=30 Score=27.52 Aligned_cols=84 Identities=18% Similarity=0.234 Sum_probs=59.0
Q ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019459 38 ITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDL 117 (340)
Q Consensus 38 Its~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDv 117 (340)
|.++|++==|--|=-=..+|+.-+.+=.+.+..+++++..+-.+..+.-...+..++|-..-.+.=+.+...|+.+..-|
T Consensus 5 I~Aiaf~vLvi~l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v 84 (90)
T PF06103_consen 5 IAAIAFAVLVIFLIKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESV 84 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44444444444444445666777777788888888888888887777777777777777777777777777777777777
Q ss_pred HHHH
Q 019459 118 AKLE 121 (340)
Q Consensus 118 aKLE 121 (340)
..|.
T Consensus 85 ~~l~ 88 (90)
T PF06103_consen 85 SELN 88 (90)
T ss_pred HHHh
Confidence 6653
No 174
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=78.86 E-value=14 Score=31.40 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 70 ELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 70 ~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
+|=+++..+|.++.+..+.+....+.-..|.+||..|..--.+|.+-|.+++.
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788999999999999999999999999999999999999999888888877
No 175
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=78.86 E-value=18 Score=32.41 Aligned_cols=49 Identities=27% Similarity=0.369 Sum_probs=38.0
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEE---RLSHVQKVYQEADSKLK 90 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~---r~~~le~~L~e~~~rl~ 90 (340)
+...+|..++.|...|+.+|.+++..|.+|++ -++.|..++.+......
T Consensus 17 ~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 17 APKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 47789999999999999999999999999998 44555554444444443
No 176
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=78.69 E-value=9.6 Score=28.89 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019459 96 NAKLAKERDSLAMTARNLSRDLAKLETFKR 125 (340)
Q Consensus 96 ~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk 125 (340)
.++|.+|++.|...+++|..|-+-+|.+=|
T Consensus 33 i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 33 IEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 344777777777777777667777777766
No 177
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=78.46 E-value=57 Score=30.28 Aligned_cols=104 Identities=20% Similarity=0.270 Sum_probs=47.9
Q ss_pred CCchhHHhcCCCCchhhhHHHHHHHHH---------HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 019459 15 HLPDEVLAVIPTDPYDQLDLARKITSM---------AIASRVSKLETETGTMRQMLYEKDRLICELEER---LSHVQKVY 82 (340)
Q Consensus 15 ~Lp~eilsvLP~DPyEQLdlArkIts~---------A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r---~~~le~~L 82 (340)
+|-++|...==+||-..|+.=.+..+. ++-+|+.+|=+=-.+.+..+.+++..-..+.++ ...+|..+
T Consensus 54 ~l~e~v~~l~idd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i 133 (190)
T PF05266_consen 54 NLAEKVKKLQIDDSRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEI 133 (190)
T ss_pred HHHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 344555555556776666655444432 445555554443333333333333333333322 23345555
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019459 83 QEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLA 118 (340)
Q Consensus 83 ~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDva 118 (340)
.+...++....++.+++.+++..-...+-+|.-++.
T Consensus 134 ~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~ 169 (190)
T PF05266_consen 134 KELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAE 169 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555444444444444444444433333333
No 178
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=78.24 E-value=60 Score=31.15 Aligned_cols=20 Identities=10% Similarity=0.144 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHhhcccc
Q 019459 115 RDLAKLETFKRQLMQSLNDD 134 (340)
Q Consensus 115 RDvaKLE~FKk~LmqSLqeD 134 (340)
...+.|...+.......+.+
T Consensus 218 ~~~~~l~~~~~~~~a~~~~~ 237 (301)
T PF14362_consen 218 ARKARLDEARQAKVAEFQAI 237 (301)
T ss_pred HHHHHHHHHHHHHHHHHhHh
Confidence 55556666666655544443
No 179
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=78.15 E-value=18 Score=39.72 Aligned_cols=41 Identities=20% Similarity=0.144 Sum_probs=20.0
Q ss_pred HHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 40 SMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQK 80 (340)
Q Consensus 40 s~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~ 80 (340)
-.+|..||..|..+......+|.+-.+.+..|+++...|..
T Consensus 560 r~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~Lae 600 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAE 600 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666665555444444444444444433333333
No 180
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=78.03 E-value=9.7 Score=32.05 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019459 82 YQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSLN 132 (340)
Q Consensus 82 L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLq 132 (340)
+.+..+++..+..++.+|..+|+.|...|+.|+.|-+=+|..=|.-+.=..
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk 79 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMVK 79 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCC
Confidence 334444555566666778888888888898888877777766665554333
No 181
>PRK02793 phi X174 lysis protein; Provisional
Probab=77.95 E-value=13 Score=29.32 Aligned_cols=43 Identities=23% Similarity=0.237 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 019459 66 RLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSR 115 (340)
Q Consensus 66 ~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~R 115 (340)
.-|.+|+.|++-.|..+.+.|.-+.. .+++-+.|...++.|..
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~-------Qq~~I~~L~~~l~~L~~ 50 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTA-------HEMEMAKLRDHLRLLTE 50 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 45566666666666666666555544 44555555555555544
No 182
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=77.78 E-value=12 Score=29.10 Aligned_cols=47 Identities=17% Similarity=0.410 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 69 CELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 69 ~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
.++++|+..+|..+-+-..++.. |-+-...+...++.++.++.+++.
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~-------lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDK-------LEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555544443333333 333333344446667777777665
No 183
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=77.77 E-value=45 Score=31.55 Aligned_cols=58 Identities=21% Similarity=0.225 Sum_probs=40.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019459 51 ETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAM 108 (340)
Q Consensus 51 E~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~ 108 (340)
|.=+.+||..=+||-.++-+--.-+....+.||..-.-++...|.|.||++||.-|-.
T Consensus 19 eel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446777777777776666655556666666667777777777888888888887753
No 184
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=77.68 E-value=28 Score=26.22 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 019459 63 EKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKL 99 (340)
Q Consensus 63 EKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL 99 (340)
-|...+.+|+.+|..|+.........+....++...|
T Consensus 23 RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 23 RKKQYIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888877776666555555533333333
No 185
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=77.67 E-value=38 Score=37.53 Aligned_cols=83 Identities=22% Similarity=0.227 Sum_probs=53.4
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICE--------------LEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLA 107 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~--------------Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa 107 (340)
-|..||-.||.|+..+|+.+.--...+.. |+.....|-.++.|...|=.+-+.|...|-+||=+|.
T Consensus 31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQ 110 (717)
T PF09730_consen 31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQ 110 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 46788889999998888887644433333 3333334444555555565666777778888888888
Q ss_pred HHHHHHhhhHHHHHHHH
Q 019459 108 MTARNLSRDLAKLETFK 124 (340)
Q Consensus 108 ~TvKKL~RDvaKLE~FK 124 (340)
.+|--|..-=--+|.+|
T Consensus 111 Kqvs~Lk~sQvefE~~K 127 (717)
T PF09730_consen 111 KQVSVLKQSQVEFEGLK 127 (717)
T ss_pred HHHHHHHHhHHHHHHHH
Confidence 77766655544555554
No 186
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=77.60 E-value=18 Score=34.64 Aligned_cols=73 Identities=27% Similarity=0.282 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 019459 54 TGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLM 128 (340)
Q Consensus 54 ~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~Lm 128 (340)
+..+-.+|.+..+++.+|..+-.+|+..+.+..+|++-..+|..-.-.++.-|.--.+...+||+ |+++++.+
T Consensus 120 ~~~l~srl~~~~~~~e~l~~~~~~L~~~~~el~~rik~~ied~~~~~~~~~vl~~l~~n~~~~v~--E~~r~~~~ 192 (217)
T COG1777 120 ISELISRLLEINREIEELSRAQTELQKQLNELMDRIKEEIEDKDGDMTERIVLEYLLKNGAADVE--ETSRRTVL 192 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhHHH--HHHhccch
Confidence 46667778899999999999999999999999999999999999888888888888888888887 56666554
No 187
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=77.60 E-value=38 Score=39.10 Aligned_cols=55 Identities=15% Similarity=0.281 Sum_probs=21.7
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKL 99 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL 99 (340)
.|+..++..+..+.....+-+..+...+++|..+..++..+...+.++.++...|
T Consensus 607 ~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 661 (1201)
T PF12128_consen 607 ERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRL 661 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3333333333334333333333434444444444444444444443333333333
No 188
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=77.44 E-value=35 Score=27.24 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=27.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 019459 49 KLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDN 96 (340)
Q Consensus 49 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~ 96 (340)
.|..-+..|+.+..+..+.+..|++.+..++.....+...+...-++.
T Consensus 4 ~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l 51 (127)
T smart00502 4 ALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDEL 51 (127)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666666665555555555444443
No 189
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.37 E-value=1.4 Score=28.64 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHHhhccccHHHHHHHHHHhhCCCChh
Q 019459 288 SYEQFSAFLASIKELNAQKQTREETLRKAEEIFGTDNKD 326 (340)
Q Consensus 288 SYEQFsaFLANIKELNAhkQTREETL~KA~eIFG~eNkD 326 (340)
++...+.++....++..=++--++.|.-.+++||++|+|
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 345666777777777777777889999999999999987
No 190
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=77.24 E-value=26 Score=32.59 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019459 69 CELEERLSHVQKVYQEADSKL 89 (340)
Q Consensus 69 ~~Lq~r~~~le~~L~e~~~rl 89 (340)
.+|+.+++.++..+++.+.++
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki 141 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKI 141 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554
No 191
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=77.23 E-value=32 Score=40.32 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=30.1
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
..++..+..++..+++.+......+..+++++..++.++.+...++..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~ 322 (1353)
T TIGR02680 275 QTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEA 322 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666666666666666666655544
No 192
>PRK02119 hypothetical protein; Provisional
Probab=77.02 E-value=18 Score=28.67 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019459 105 SLAMTARNLSRDLAKLETFKRQLMQSLND 133 (340)
Q Consensus 105 sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 133 (340)
.|..+|-+.++++++|+.--+.|.+.|.+
T Consensus 27 ~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 27 ELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555666666666555555555544
No 193
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=76.96 E-value=29 Score=39.42 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 019459 63 EKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRD 116 (340)
Q Consensus 63 EKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RD 116 (340)
+.++.+.+|.+.+..++++...++.+..--.+-.++|-.|...|.-.+++|.|.
T Consensus 463 ~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 463 DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666655555555555555555555555555555555
No 194
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=76.69 E-value=24 Score=32.44 Aligned_cols=62 Identities=21% Similarity=0.157 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHH
Q 019459 62 YEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNA-KLAKERDSLAMTARNLSRDLAKLETF 123 (340)
Q Consensus 62 aEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~-kL~~E~~sLa~TvKKL~RDvaKLE~F 123 (340)
.+....|.+|++....|+..+.+...++..+....+ .++.++......|..|.+.-..|..+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~ 185 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQ 185 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777777777666555443 35556666677777777766666543
No 195
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=76.67 E-value=25 Score=39.19 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=26.8
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQK 80 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~ 80 (340)
.|+.|++|..+|++-|+.|.+....+++-|..+..
T Consensus 496 ~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~a 530 (961)
T KOG4673|consen 496 LITKLQSEENKLKSILRDKEETEKLLQETIEKHQA 530 (961)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 68899999999999999988776666655554443
No 196
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=76.63 E-value=26 Score=40.98 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=32.9
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKV 81 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~ 81 (340)
..|+..|+.++..|+.++++.++.+..|..++..|+.+
T Consensus 741 ~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e 778 (1353)
T TIGR02680 741 LRRIAELDARLAAVDDELAELARELRALGARQRALADE 778 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999888887665
No 197
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=76.59 E-value=5.3 Score=30.86 Aligned_cols=29 Identities=17% Similarity=0.294 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 019459 70 ELEERLSHVQKVYQEADSKLKIFIDDNAK 98 (340)
Q Consensus 70 ~Lq~r~~~le~~L~e~~~rl~~a~de~~k 98 (340)
.++.|++.||..|+++.+|+..++.+-.+
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888889999999999888887665443
No 198
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=76.49 E-value=28 Score=34.91 Aligned_cols=64 Identities=22% Similarity=0.251 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHhhc
Q 019459 68 ICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAK----LETFKRQLMQSL 131 (340)
Q Consensus 68 i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaK----LE~FKk~LmqSL 131 (340)
-..+-+.-.+.+..|.|-++++..-.+|..||.+|+-.|+.||.+---.|.| =+.||.+|..-.
T Consensus 106 ~~~id~~na~i~k~lAeeNqKIq~gi~EL~Kl~~e~~~l~kTi~~TIa~lEKKFqI~~~FKekLesfa 173 (353)
T PF01540_consen 106 KKAIDDKNAQIDKKLAEENQKIQNGIEELKKLSNEAFELSKTINKTIAKLEKKFQIDKDFKEKLESFA 173 (353)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 3344445555677788999999999999999999999999998654333322 135666665443
No 199
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=76.48 E-value=59 Score=31.25 Aligned_cols=96 Identities=21% Similarity=0.244 Sum_probs=52.2
Q ss_pred CCchhHHhcCCCCchhhhHHHHHHHHHHHHHHhhhhHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 019459 15 HLPDEVLAVIPTDPYDQLDLARKITSMAIASRVSKLETETGTM--RQMLYEKDRLICELEERLSHVQKVYQE--ADSKLK 90 (340)
Q Consensus 15 ~Lp~eilsvLP~DPyEQLdlArkIts~A~atRVs~LE~E~~~L--R~~laEKd~~i~~Lq~r~~~le~~L~e--~~~rl~ 90 (340)
.|-+||-.||=..|.+=.| ++..|-.-|+.-..+| +++|++| +.+.+|.+.+++.+..|.+ ...|-.
T Consensus 2 sL~Eeikrvl~enpeilvd--------vL~~Rpeilye~l~kL~pwq~latk-~dve~l~~e~E~~~k~l~de~~E~r~~ 72 (231)
T COG5493 2 SLAEEIKRVLLENPEILVD--------VLTQRPEILYEVLAKLTPWQQLATK-QDVEELRKETEQRQKELADEKLEVRKQ 72 (231)
T ss_pred CHHHHHHHHHHhCcHHHHH--------HHHhChHHHHHHHHhhchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777743333 3455555555555555 5667776 5666676666666666653 122333
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 91 IFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 91 ~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
.|..+-.||.++.- ..--..+.+|+-+||
T Consensus 73 ~~tke~lk~l~~~~--~~~f~a~~edi~rlE 101 (231)
T COG5493 73 KATKEDLKLLQRFQ--EEEFRATKEDIKRLE 101 (231)
T ss_pred HhhHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 34444444333332 333344556666666
No 200
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=76.47 E-value=35 Score=38.05 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 35 ARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 35 ArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
+.+.-+++.++| +.+++.+|..|+..|..|+.++..++.+..+...++..
T Consensus 277 ~~~s~~~~mK~k-------~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~ 326 (775)
T PF10174_consen 277 VYKSHSLAMKSK-------MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEV 326 (775)
T ss_pred HHHhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 456666776666 45555566666666666666666666666665555443
No 201
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.29 E-value=27 Score=38.06 Aligned_cols=71 Identities=23% Similarity=0.230 Sum_probs=45.5
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHV--------------QKVYQEADSKLKIFIDDNAKLAKERDSLAM 108 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~l--------------e~~L~e~~~rl~~a~de~~kL~~E~~sLa~ 108 (340)
|-.||-.||.|...+|+.|+++.....-|...++.+ -.+|-|..-|=.+.+.|-..|-+||=+|..
T Consensus 105 yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQK 184 (772)
T KOG0999|consen 105 YLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQK 184 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 567888999999999999999888877776666543 223333333333444455555555555555
Q ss_pred HHHHH
Q 019459 109 TARNL 113 (340)
Q Consensus 109 TvKKL 113 (340)
+|-.|
T Consensus 185 qVs~L 189 (772)
T KOG0999|consen 185 QVSNL 189 (772)
T ss_pred HHHHH
Confidence 55444
No 202
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=76.26 E-value=20 Score=41.66 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=21.2
Q ss_pred cCCCCchhhhHHHHHH-----HHHHHHHHhhhhHhHHHHHHHHHHHHH
Q 019459 23 VIPTDPYDQLDLARKI-----TSMAIASRVSKLETETGTMRQMLYEKD 65 (340)
Q Consensus 23 vLP~DPyEQLdlArkI-----ts~A~atRVs~LE~E~~~LR~~laEKd 65 (340)
|.+-+|.+==.+.+.. -.+++..++..||..++.||....+-.
T Consensus 772 ~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~ 819 (1293)
T KOG0996|consen 772 VTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELE 819 (1293)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 6666666544444332 233444445555555555555444433
No 203
>PF15456 Uds1: Up-regulated During Septation
Probab=76.23 E-value=36 Score=29.67 Aligned_cols=70 Identities=20% Similarity=0.271 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019459 52 TETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFI-----------DDNAKLAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 52 ~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~-----------de~~kL~~E~~sLa~TvKKL~RDvaKL 120 (340)
.|+..|+.++.-=+..|..++.++. ||.-+.++...|.... +...+=..|...+-.-|..+..++.++
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~l 100 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKL 100 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4788899998888999999999998 9999999888887752 223333444555555556666677666
Q ss_pred HH
Q 019459 121 ET 122 (340)
Q Consensus 121 E~ 122 (340)
|.
T Consensus 101 e~ 102 (124)
T PF15456_consen 101 EN 102 (124)
T ss_pred HH
Confidence 64
No 204
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=76.16 E-value=16 Score=41.40 Aligned_cols=97 Identities=23% Similarity=0.229 Sum_probs=74.0
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019459 41 MAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 41 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKL 120 (340)
.-+--+++-||.|..+||..|..-+...+.|-+-..+....|----+.|+.-+.++.+|.+-+..-..+++||.-.+-.+
T Consensus 512 ~~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~ 591 (913)
T KOG0244|consen 512 GTLEAEKSPLESERSRLRNELNVFNRLAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIA 591 (913)
T ss_pred hhHHHHhcccccccHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 44556777788888999999888777555554433333333333334566666789999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCC
Q 019459 121 ETFKRQLMQSLNDDNSS 137 (340)
Q Consensus 121 E~FKk~LmqSLqeD~~~ 137 (340)
|.-|.+||+-..+|.+.
T Consensus 592 k~~kv~l~~~~~~d~ek 608 (913)
T KOG0244|consen 592 KGQKVQLLRVMKEDAEK 608 (913)
T ss_pred HHHHHHHHHHHhhhHHH
Confidence 99999999999888874
No 205
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=76.15 E-value=24 Score=29.77 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=31.4
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 41 MAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVY 82 (340)
Q Consensus 41 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L 82 (340)
-.|..+|..|+..-..|.+.+.++...+....+....++..+
T Consensus 75 ~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~~ 116 (213)
T cd00176 75 EEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDAD 116 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788888888888888888888888777766666555433
No 206
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=76.13 E-value=18 Score=31.06 Aligned_cols=53 Identities=21% Similarity=0.245 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 69 CELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 69 ~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
.+|=+++..||.++.+....+....++-..|.+||..|..--.+|.+-|++++
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667888888888888888888888888888888888888888877777664
No 207
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.07 E-value=36 Score=39.51 Aligned_cols=33 Identities=24% Similarity=0.227 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 019459 96 NAKLAKERDSLAMTARNLSRDLAKLETFKRQLM 128 (340)
Q Consensus 96 ~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~Lm 128 (340)
...|.+|...|...++.+..++.-|......+.
T Consensus 890 L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~ 922 (1311)
T TIGR00606 890 LVELSTEVQSLIREIKDAKEQDSPLETFLEKDQ 922 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 344444444444444444444444444433333
No 208
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=75.80 E-value=15 Score=28.53 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 66 RLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 66 ~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
..|.+|+.|++-+|..+.+.+.-+..
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~ 29 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTE 29 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666555555555544
No 209
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=75.77 E-value=19 Score=31.80 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=10.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 51 ETETGTMRQMLYEKDRLICELEERLS 76 (340)
Q Consensus 51 E~E~~~LR~~laEKd~~i~~Lq~r~~ 76 (340)
..|+..|+.++.+-...+..|+..+.
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444443333333333333333
No 210
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=75.77 E-value=33 Score=28.75 Aligned_cols=8 Identities=13% Similarity=0.281 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 019459 106 LAMTARNL 113 (340)
Q Consensus 106 La~TvKKL 113 (340)
|..+++-+
T Consensus 84 l~~~l~~v 91 (106)
T PF10805_consen 84 LSARLQGV 91 (106)
T ss_pred HHHHHHHH
Confidence 33333333
No 211
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=75.67 E-value=21 Score=37.72 Aligned_cols=66 Identities=21% Similarity=0.224 Sum_probs=44.1
Q ss_pred HHHHHHhhhhHh-----------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019459 41 MAIASRVSKLET-----------ETGTMRQMLYEKDRL---ICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSL 106 (340)
Q Consensus 41 ~A~atRVs~LE~-----------E~~~LR~~laEKd~~---i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sL 106 (340)
+|++.-+|.|-. |-..|+.+|-+-.+. ..+|==|+..+|.+...+..|...+++|++||-++-+.|
T Consensus 388 ~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekL 467 (488)
T PF06548_consen 388 NSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKL 467 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555544 556666666544443 567777888888888888888888777777777665544
No 212
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=75.65 E-value=11 Score=36.25 Aligned_cols=104 Identities=18% Similarity=0.214 Sum_probs=62.7
Q ss_pred HhcCCCCchhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH--------------
Q 019459 21 LAVIPTDPYDQLDLARKITSMAIASRVSKLETETGTMRQML---YEKDRLICELEERLSHVQKVYQ-------------- 83 (340)
Q Consensus 21 lsvLP~DPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~l---aEKd~~i~~Lq~r~~~le~~L~-------------- 83 (340)
-..||+|||+. --+.=++.+|...-..+...--.+ .+++..+.++.+.+..||.+|.
T Consensus 87 ~~iLP~DPy~R------a~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k~k~~fgG~~~G~v 160 (231)
T KOG0406|consen 87 PPILPSDPYER------AQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELGKGKDFFGGETIGFV 160 (231)
T ss_pred CCCCCCCHHHH------HHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCHh
Confidence 35899999984 222334555554444444443333 5677788889999999999888
Q ss_pred -----HHHHHHHHhHHHHH-----------HHHHHHHHH--HHHHHHHhhhHHHHHHHHHHHHhh
Q 019459 84 -----EADSKLKIFIDDNA-----------KLAKERDSL--AMTARNLSRDLAKLETFKRQLMQS 130 (340)
Q Consensus 84 -----e~~~rl~~a~de~~-----------kL~~E~~sL--a~TvKKL~RDvaKLE~FKk~LmqS 130 (340)
-.=.|+..+.++-. ||.+=-+.+ ..+|++..-|..|+=.|=+..++.
T Consensus 161 Di~~~p~~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~~e~~~e~~~~~~~~ 225 (231)
T KOG0406|consen 161 DIAIGPSFERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPDSEKVVEFMKKYRQG 225 (231)
T ss_pred hhhHHhhHHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCCHHHHHHHHHHHHHh
Confidence 34556666555532 121111111 235666667777777777776664
No 213
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=75.63 E-value=28 Score=36.83 Aligned_cols=61 Identities=23% Similarity=0.243 Sum_probs=31.3
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019459 47 VSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLA 107 (340)
Q Consensus 47 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa 107 (340)
+..++.++..|...+.+-...+.+....++.++..+.+...+|.....++.++.+.-..|-
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lr 410 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLR 410 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554444444444444555555555555555555555555544444443
No 214
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=75.52 E-value=37 Score=33.40 Aligned_cols=85 Identities=19% Similarity=0.209 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHH-HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019459 32 LDLARKITSMAIA-SRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTA 110 (340)
Q Consensus 32 LdlArkIts~A~a-tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~Tv 110 (340)
=.||..||+.+-+ --.-+-|-+.+..|++..-+.-.+.++++.+. .++....+.+....+...+|..+-.+|-..+
T Consensus 123 R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~---~ai~~~~~~~~~~~~~l~~l~~de~~Le~KI 199 (267)
T PF10234_consen 123 RQLASEITQRGASLYDLLGKEVELREERQRALARPLELNEIEKALK---EAIKAVQQQLQQTQQQLNNLASDEANLEAKI 199 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCCcCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556655421 11223355566666666666555555555433 3344444455555555566777777887777
Q ss_pred HHHhhhHHH
Q 019459 111 RNLSRDLAK 119 (340)
Q Consensus 111 KKL~RDvaK 119 (340)
+|-..++.+
T Consensus 200 ekkk~ELER 208 (267)
T PF10234_consen 200 EKKKQELER 208 (267)
T ss_pred HHHHHHHHH
Confidence 776666654
No 215
>PRK02793 phi X174 lysis protein; Provisional
Probab=75.48 E-value=19 Score=28.45 Aligned_cols=54 Identities=24% Similarity=0.356 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCC
Q 019459 69 CELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSLNDDNS 136 (340)
Q Consensus 69 ~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~~ 136 (340)
.++++|+..||. |+.. +.+=-+.|...|-+.++++++|+.--+.|...|.+-.+
T Consensus 4 ~~~e~Ri~~LE~-------~laf-------Qe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 4 SSLEARLAELES-------RLAF-------QEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred hhHHHHHHHHHH-------HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 346677776666 4444 22223456677788888888888777777777765443
No 216
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=75.39 E-value=55 Score=28.48 Aligned_cols=54 Identities=15% Similarity=0.367 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 019459 69 CELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQ 129 (340)
Q Consensus 69 ~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~Lmq 129 (340)
..+.+++..|+..|.+.+.|...+++ |..||.- .|-.|.-||+-|..+=|..++
T Consensus 64 ~~~~~~~~~L~~el~~l~~ry~t~Le----llGEK~E---~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 64 RALKKEVEELEQELEELQQRYQTLLE----LLGEKSE---EVEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 33345555666666666666666555 3333322 344555666666665555554
No 217
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=75.36 E-value=68 Score=29.53 Aligned_cols=39 Identities=21% Similarity=0.352 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019459 68 ICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSL 106 (340)
Q Consensus 68 i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sL 106 (340)
..+|+.++..|+..+.+...++.......+.+.+....+
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~ 160 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL 160 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666665555555555555443
No 218
>PRK02119 hypothetical protein; Provisional
Probab=75.29 E-value=18 Score=28.69 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 019459 64 KDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRD 116 (340)
Q Consensus 64 Kd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RD 116 (340)
-+.-|.+|+.|++-.|..+.+.|.-+.. .+++-+.|...++.|...
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~-------Qq~~id~L~~ql~~L~~r 52 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIE-------QQFVIDKMQVQLRYMANK 52 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777776655 555666666666666443
No 219
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=75.29 E-value=22 Score=37.31 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH-----HHHHHHHHhhccc
Q 019459 94 DDNAKLAKERDSLAMTARNLSRDLAKL-----ETFKRQLMQSLND 133 (340)
Q Consensus 94 de~~kL~~E~~sLa~TvKKL~RDvaKL-----E~FKk~LmqSLqe 133 (340)
++.++|.+|.+.+...++++...|.+. +.|.+.+..-|++
T Consensus 346 ~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~~ 390 (563)
T TIGR00634 346 ESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVEQELKA 390 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677777777777777777777776 7777777777765
No 220
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=75.25 E-value=33 Score=41.63 Aligned_cols=55 Identities=24% Similarity=0.285 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 019459 74 RLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLM 128 (340)
Q Consensus 74 r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~Lm 128 (340)
++..+=.+|.-++.++..+.-+-.+|.+|+..|..|-++|.+++.+|..-+.-|+
T Consensus 725 ~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~ 779 (1822)
T KOG4674|consen 725 TVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQ 779 (1822)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444666777788888889999999999999999999999999998888776
No 221
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=75.20 E-value=53 Score=31.08 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=56.3
Q ss_pred chhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 019459 28 PYDQLDLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDN 96 (340)
Q Consensus 28 PyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~ 96 (340)
+.-.+.++.+.....+..-+........++.+.+.+++..+..+++....|+..+.+...+........
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~a~~~~~r~~~~~~~~~~~~~~~~~~~~aq~L~~k~r~l~~~~~~~~~~~ 208 (247)
T PF14661_consen 140 SALRLAEAFRLKPQDLHELLARILAHRNSFLQILQEKDAARQKYQEFAQLLRKKYRELSAECAELQAQL 208 (247)
T ss_pred hhhhhhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445688888888888888888888889999999999999999999998888888888777776544443
No 222
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=75.04 E-value=28 Score=29.96 Aligned_cols=58 Identities=21% Similarity=0.298 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhHhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 31 QLDLARKITSMAIASRVSKLETETGTMRQ------MLYEKDRLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 31 QLdlArkIts~A~atRVs~LE~E~~~LR~------~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
||+.|++ ..-..||.+||.-...++. -+.|+...|.+.+.+|...+.+|.++.+....
T Consensus 32 qI~~Ak~---~gN~~rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~ 95 (115)
T PF06476_consen 32 QIEYAKA---HGNQHRVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAKGDS 95 (115)
T ss_pred HHHHHHH---cCCHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 4555543 2234699999999998875 47788889999999999999999999888765
No 223
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=75.01 E-value=26 Score=34.96 Aligned_cols=90 Identities=17% Similarity=0.269 Sum_probs=54.0
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHhhhHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERD---SLAMTARNLSRDLA 118 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~---sLa~TvKKL~RDva 118 (340)
+|+.+--.|=.++..||.++.+.-..-.+|-++|..+-...-+.++++.....+-.+|.+.++ ..---+++|.|.+.
T Consensus 38 ~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~ 117 (294)
T COG1340 38 ELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIE 117 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHH
Confidence 455555555556666666666555555566666666666666666666665555566655555 33344667777777
Q ss_pred HHHHHHHHHHhhc
Q 019459 119 KLETFKRQLMQSL 131 (340)
Q Consensus 119 KLE~FKk~LmqSL 131 (340)
+||-+=.|..-++
T Consensus 118 ~Le~~~~T~~L~~ 130 (294)
T COG1340 118 RLEKKQQTSVLTP 130 (294)
T ss_pred HHHHHHHhcCCCh
Confidence 7776655544333
No 224
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=74.92 E-value=46 Score=27.42 Aligned_cols=65 Identities=18% Similarity=0.193 Sum_probs=36.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019459 49 KLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNL 113 (340)
Q Consensus 49 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL 113 (340)
+||+-|...=.-++==.-.|.+|.++-..|..+.+.+..-=....++|.+|..|..+-..-++.|
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433333333333455566666666666555555554455667778888877766666555
No 225
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=74.87 E-value=19 Score=35.64 Aligned_cols=18 Identities=17% Similarity=0.045 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019459 56 TMRQMLYEKDRLICELEE 73 (340)
Q Consensus 56 ~LR~~laEKd~~i~~Lq~ 73 (340)
.||+++.++...+..|.+
T Consensus 3 el~~~~~~~~~~~r~l~~ 20 (378)
T TIGR01554 3 ELKEQREEIVAEIRSLLD 20 (378)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 345555555555555544
No 226
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=74.87 E-value=23 Score=34.03 Aligned_cols=60 Identities=13% Similarity=0.217 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019459 72 EERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSL 131 (340)
Q Consensus 72 q~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 131 (340)
+.|+..||+.+.--+.-+.........|+.|-+.|-..|-.++.+|.+|..=-|.|-+-|
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dl 98 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQI 98 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666665554444333343444455788888888888888888887766555555433
No 227
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=74.60 E-value=6.4 Score=39.62 Aligned_cols=66 Identities=17% Similarity=0.246 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 56 TMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 56 ~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
.|+..|.+=..-|.+|...+...+..|......+....-|-.+|...-.+++-+|..|.+-|+.||
T Consensus 88 ~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 88 SLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALE 153 (326)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHh
Confidence 333333333333333333333333344444444444444444455555555555555555555555
No 228
>PRK04406 hypothetical protein; Provisional
Probab=74.58 E-value=28 Score=27.91 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019459 67 LICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNL 113 (340)
Q Consensus 67 ~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL 113 (340)
-|.+|+.|++-.|..+.+.|.-+.. .+++-+.|...++.|
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~-------Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQ-------QQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 4455555555555555555544433 455555555555555
No 229
>TIGR02559 HrpB7 type III secretion protein HrpB7. This family of genes is found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=74.50 E-value=27 Score=32.02 Aligned_cols=51 Identities=6% Similarity=0.104 Sum_probs=45.2
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 41 MAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 41 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
-.+.-+|..+|.++..|++-|..|...|+..+..|..++..+.-...|+..
T Consensus 82 ~vl~~~~~~aE~~~aaa~~al~~~~~~laa~~r~iaRn~a~id~c~eR~~~ 132 (158)
T TIGR02559 82 DVLEAHLGAAEQAEAAARAALQALAAALAAKKREIARLDAQIDVCRERAER 132 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999999998887776644
No 230
>PRK00295 hypothetical protein; Provisional
Probab=74.49 E-value=25 Score=27.51 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019459 68 ICELEERLSHVQKVYQEADSKL 89 (340)
Q Consensus 68 i~~Lq~r~~~le~~L~e~~~rl 89 (340)
|.+|+.|++-.|..+.+.|.-+
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v 28 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVL 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666665555555444444
No 231
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.35 E-value=44 Score=32.93 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=36.8
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019459 47 VSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLS 114 (340)
Q Consensus 47 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~ 114 (340)
...-++++..+-..+.+=...|..|..+|..+.....+...+..+...|-.+|.+|-+.|-+.++..+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555556666555555554433
No 232
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=74.21 E-value=44 Score=29.41 Aligned_cols=60 Identities=25% Similarity=0.384 Sum_probs=42.3
Q ss_pred hHHhcCCCCchhhhHH-----------HHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 19 EVLAVIPTDPYDQLDL-----------ARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHV 78 (340)
Q Consensus 19 eilsvLP~DPyEQLdl-----------ArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~l 78 (340)
|++.-|=+.|+-.|-. +-.-..++|..|+...|.++.++-..+.|+....+...+.++.+
T Consensus 19 ~~leklds~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv 89 (131)
T PF10158_consen 19 EVLEKLDSRPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKV 89 (131)
T ss_pred HHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777776666655421 11123578888999999999999999998888777666665543
No 233
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=74.10 E-value=41 Score=30.99 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHH
Q 019459 99 LAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 99 L~~E~~sLa~TvKKL~RDvaKL 120 (340)
....|+.|..-+.||..|+.+|
T Consensus 93 ~~~~N~~L~~dl~klt~~~~~l 114 (182)
T PF15035_consen 93 ARKANEALQEDLQKLTQDWERL 114 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777763
No 234
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=73.86 E-value=13 Score=39.00 Aligned_cols=61 Identities=21% Similarity=0.202 Sum_probs=46.1
Q ss_pred CchhhhHHHHHHHHH-HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 27 DPYDQLDLARKITSM-AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADS 87 (340)
Q Consensus 27 DPyEQLdlArkIts~-A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~ 87 (340)
+|.+|+++=-.+... .+...+..+..+...++++|.+......++++++..|+.+|.|..+
T Consensus 142 ~~~~~~~lLD~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~ 203 (563)
T TIGR00634 142 RPDEQRQLLDTFAGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEE 203 (563)
T ss_pred CHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 888998777776653 4777788888888888888888777777777777777777666543
No 235
>PRK10807 paraquat-inducible protein B; Provisional
Probab=73.72 E-value=60 Score=34.60 Aligned_cols=98 Identities=16% Similarity=0.272 Sum_probs=49.0
Q ss_pred hcCCCCchhhhHHHHHHHHHHHHHHhhhh--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhHH
Q 019459 22 AVIPTDPYDQLDLARKITSMAIASRVSKL--ETETGTMRQMLYEKDRLICELEERLSHVQKVY-----QEADSKLKIFID 94 (340)
Q Consensus 22 svLP~DPyEQLdlArkIts~A~atRVs~L--E~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L-----~e~~~rl~~a~d 94 (340)
-|||+.|=.==+|..+|.. +..|+.+| |.=+..|..-|.+=++.+.+|+.-+..++..+ +...+.|+++++
T Consensus 406 pvIPt~ps~l~~l~~~~~~--il~kin~lple~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~TL~ 483 (547)
T PRK10807 406 PIIPTVSGGLAQIQQKLME--ALDKINNLPLNPMIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADMQKTLR 483 (547)
T ss_pred ceeecCCCCHHHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHH
Confidence 6888877542233344432 33444444 33345556666666666666666555444222 222244555555
Q ss_pred HHHHHHHH-------HHHHHHHHHHHhhhHHHHH
Q 019459 95 DNAKLAKE-------RDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 95 e~~kL~~E-------~~sLa~TvKKL~RDvaKLE 121 (340)
+-.++.++ ...|.+|++.|+|=+.-|.
T Consensus 484 ~l~~~l~~~~~~s~~~~~l~~tl~~l~~~~r~lr 517 (547)
T PRK10807 484 ELNRSMQGFQPGSPAYNKMVADMQRLDQVLRELQ 517 (547)
T ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 55555544 3344555555555544443
No 236
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=73.39 E-value=97 Score=32.59 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=16.4
Q ss_pred HHHHHhhhHHH---------HHHHHHHHHhhcccc
Q 019459 109 TARNLSRDLAK---------LETFKRQLMQSLNDD 134 (340)
Q Consensus 109 TvKKL~RDvaK---------LE~FKk~LmqSLqeD 134 (340)
..+.|+++..| +|.|+++|-+++.+.
T Consensus 121 ~~~el~~~~~~~Ll~~~~~~~e~f~e~l~~~~~~s 155 (448)
T COG1322 121 RLAELNQQNLKQLLKPLREVLEKFREQLEQRIHES 155 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666554 788888877766443
No 237
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=73.23 E-value=24 Score=33.71 Aligned_cols=54 Identities=13% Similarity=0.292 Sum_probs=25.9
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019459 48 SKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAK 101 (340)
Q Consensus 48 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~ 101 (340)
..+.+|..+|+.++.+|+.....+++++..|..+..+-+.-..+.+||+.+|++
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555555444444444444444444433
No 238
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=73.23 E-value=12 Score=28.70 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=21.1
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVY 82 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L 82 (340)
||..||.+++++-..+.-=...+.+|.+.+..++...
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666665555555555555555444433
No 239
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=73.17 E-value=72 Score=32.35 Aligned_cols=32 Identities=13% Similarity=0.200 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Q 019459 30 DQLDLARKITSMAIASRVSKLETETGTMRQML 61 (340)
Q Consensus 30 EQLdlArkIts~A~atRVs~LE~E~~~LR~~l 61 (340)
++||-...=...++..++..-+..+..|+..|
T Consensus 267 q~Ld~l~~rL~~a~~~~L~~~~~~L~~L~~rL 298 (438)
T PRK00286 267 QRLQQLQQRLARAMRRRLEQKRQRLDQLARRL 298 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555555556666777766666666666555
No 240
>PRK04325 hypothetical protein; Provisional
Probab=73.11 E-value=23 Score=28.10 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019459 68 ICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLS 114 (340)
Q Consensus 68 i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~ 114 (340)
|.+|+.|++-.|..+.+.|.-+.. .+++-+.|...++.|.
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~-------Qq~~I~~L~~ql~~L~ 50 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVAR-------QQQTLDLLQAQLRLLY 50 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 777777777777777777666654 4445555555555553
No 241
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=72.97 E-value=65 Score=29.35 Aligned_cols=74 Identities=28% Similarity=0.291 Sum_probs=43.0
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRL--------ICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSR 115 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~--------i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~R 115 (340)
...|-+||......|.+|+|=.+. |.+-=+++..+...|+-...+- ..|...||.|-..+++|..
T Consensus 47 I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E-------~qLr~rRD~LErrl~~l~~ 119 (159)
T PF05384_consen 47 IEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLRERE-------KQLRERRDELERRLRNLEE 119 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666553322 2222233333333333333333 4488889999999999988
Q ss_pred hHHHHHHHH
Q 019459 116 DLAKLETFK 124 (340)
Q Consensus 116 DvaKLE~FK 124 (340)
=|.|-|.+=
T Consensus 120 tierAE~l~ 128 (159)
T PF05384_consen 120 TIERAENLV 128 (159)
T ss_pred HHHHHHHHH
Confidence 888877653
No 242
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=72.85 E-value=1.4e+02 Score=31.85 Aligned_cols=30 Identities=13% Similarity=0.423 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHH
Q 019459 289 YEQFSAFLASIKELNAQKQTREETLRKAEE 318 (340)
Q Consensus 289 YEQFsaFLANIKELNAhkQTREETL~KA~e 318 (340)
|+.|..|...+-++-.+..+-.....+|-.
T Consensus 379 ydkl~~f~~~~~klG~~L~~a~~~y~~A~~ 408 (475)
T PRK10361 379 YDKMRLFVDDMSAIGQSLDKAQDNYRQAMK 408 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665555555555544443
No 243
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=72.80 E-value=77 Score=29.99 Aligned_cols=39 Identities=21% Similarity=0.154 Sum_probs=24.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019459 88 KLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQ 126 (340)
Q Consensus 88 rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~ 126 (340)
.+....+||++|.+|+..|...+-.|+.--+..+.+|+.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~l 108 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLREL 108 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777776666665555555566553
No 244
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=72.73 E-value=40 Score=39.53 Aligned_cols=43 Identities=28% Similarity=0.339 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccC
Q 019459 93 IDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSLNDDN 135 (340)
Q Consensus 93 ~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~ 135 (340)
.++...|.++..+|.++.+.++.++.|++-.||..+..+++-+
T Consensus 622 ~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~e 664 (1317)
T KOG0612|consen 622 SEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSE 664 (1317)
T ss_pred HHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444667777778888888888888888888888777665433
No 245
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=72.48 E-value=29 Score=32.62 Aligned_cols=70 Identities=20% Similarity=0.247 Sum_probs=39.8
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLIC-------ELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTAR 111 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~-------~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvK 111 (340)
.++.+|-.||-.+..|-.++.++-+... .|.++|..++..|.-.+.++-+.++=.+.-.+-.|.|-.|+.
T Consensus 76 rvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~~~~ 152 (189)
T TIGR02132 76 NVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDELKETIQ 152 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHH
Confidence 3677888888888888877777666655 344555555555555444444433333322233334444443
No 246
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=72.40 E-value=48 Score=26.44 Aligned_cols=91 Identities=20% Similarity=0.268 Sum_probs=57.0
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHH----HHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAK-----LAKER----DSLAMTARNL 113 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~k-----L~~E~----~sLa~TvKKL 113 (340)
+...+..|......+...+.+-+..+..+++++......+...-.+|..++++-++ |.++. ..|-...+.|
T Consensus 5 L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l 84 (127)
T smart00502 5 LEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESL 84 (127)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666667777777777777777777777777777777776665422 22222 3456666666
Q ss_pred hhhHHHHHHHHHHHHhhccc
Q 019459 114 SRDLAKLETFKRQLMQSLND 133 (340)
Q Consensus 114 ~RDvaKLE~FKk~LmqSLqe 133 (340)
..++++|...-.-+-+-|+.
T Consensus 85 ~~~l~~l~~~~~~~e~~l~~ 104 (127)
T smart00502 85 TQKQEKLSHAINFTEEALNS 104 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 66666666655555555544
No 247
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=72.19 E-value=48 Score=26.41 Aligned_cols=7 Identities=43% Similarity=0.885 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 019459 70 ELEERLS 76 (340)
Q Consensus 70 ~Lq~r~~ 76 (340)
.|+.||.
T Consensus 8 ~LE~ki~ 14 (72)
T PF06005_consen 8 QLEEKIQ 14 (72)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344433
No 248
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=72.18 E-value=1.3e+02 Score=34.88 Aligned_cols=94 Identities=21% Similarity=0.347 Sum_probs=64.9
Q ss_pred HHHHhhhhHhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 019459 43 IASRVSKLETETGTMRQMLY------EKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRD 116 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~la------EKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RD 116 (340)
+......+..++++|+.++. |-...+..++.+++.++.....+.+.+..+..+-.++.++++....+++++.+.
T Consensus 440 ~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~ 519 (1201)
T PF12128_consen 440 LQEQREQLKSELAELKQQLKNPQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRE 519 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555443 233445556667777777777777777788888888888999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCC
Q 019459 117 LAKLETFKRQLMQSLNDDNS 136 (340)
Q Consensus 117 vaKLE~FKk~LmqSLqeD~~ 136 (340)
+.+|+.=-..|..-|.-..+
T Consensus 520 ~~~~~~~~~~l~~~L~p~~g 539 (1201)
T PF12128_consen 520 LEELRAQIAELQRQLDPQKG 539 (1201)
T ss_pred HHHHHHHHHHHHHhhCCCCC
Confidence 99988777777776654433
No 249
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=72.06 E-value=18 Score=36.65 Aligned_cols=62 Identities=21% Similarity=0.289 Sum_probs=56.2
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERD 104 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~ 104 (340)
|++|-..|-.+...|-++..+-.....++++++.++..-...-+.-|....+|++++.+|-.
T Consensus 264 I~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemE 325 (384)
T KOG0972|consen 264 IASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEME 325 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999887754
No 250
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=71.99 E-value=70 Score=35.51 Aligned_cols=57 Identities=16% Similarity=0.213 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 32 LDLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKL 89 (340)
Q Consensus 32 LdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl 89 (340)
++-|+++..-.- .++..|=.++...|.++.++.+.++.+.+++..+..+|.+-..+|
T Consensus 504 i~~A~~~~~~~~-~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l 560 (782)
T PRK00409 504 IEEAKKLIGEDK-EKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKL 560 (782)
T ss_pred HHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666654422 255555555555556666665555555555555555554444444
No 251
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=71.93 E-value=29 Score=36.33 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=14.9
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEK 64 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEK 64 (340)
+++.++..++.|+..||.+|.+-
T Consensus 113 ~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 113 VLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777776664
No 252
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=71.73 E-value=80 Score=34.70 Aligned_cols=86 Identities=17% Similarity=0.296 Sum_probs=61.7
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhH----
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDL---- 117 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDv---- 117 (340)
.+-.++.+||.-+.+|.....+=++.+.+|++.++.|+..|.+...++. .....-+|-..+-..+-+|++.|
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~----~~~~~~rei~~~~~~I~~L~~~L~e~~ 494 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR----DKVRKDREIRARDRRIERLEKELEEKK 494 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888888888888888888887777775 34444455555666666666655
Q ss_pred HHHHHHHHHHHhhc
Q 019459 118 AKLETFKRQLMQSL 131 (340)
Q Consensus 118 aKLE~FKk~LmqSL 131 (340)
.+.|-+|+.|-+-.
T Consensus 495 ~~ve~L~~~l~~l~ 508 (652)
T COG2433 495 KRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHH
Confidence 35667777776544
No 253
>smart00338 BRLZ basic region leucin zipper.
Probab=71.40 E-value=18 Score=27.20 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 63 EKDRLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 63 EKd~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
-|...+.+|+.++..|+.+-.+...++..
T Consensus 23 rKk~~~~~Le~~~~~L~~en~~L~~~~~~ 51 (65)
T smart00338 23 RKKAEIEELERKVEQLEAENERLKKEIER 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888877777666665555555
No 254
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=71.34 E-value=81 Score=35.32 Aligned_cols=81 Identities=22% Similarity=0.294 Sum_probs=51.6
Q ss_pred HHHHHHH-HHHHHHHhhhhHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019459 33 DLARKIT-SMAIASRVSKLETE-------TGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERD 104 (340)
Q Consensus 33 dlArkIt-s~A~atRVs~LE~E-------~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~ 104 (340)
+|++|-+ =+|+.||+..++.. +..|+..|.-|+.+..-||.-|..|-..|-+.+.-|.....-..+++.|+.
T Consensus 295 eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~ 374 (775)
T PF10174_consen 295 ELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKS 374 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555552 34666666666554 455666677777777777777777777777777777666666666666666
Q ss_pred HHHHHHHHH
Q 019459 105 SLAMTARNL 113 (340)
Q Consensus 105 sLa~TvKKL 113 (340)
.+..-|.+|
T Consensus 375 ~~~~Ei~~l 383 (775)
T PF10174_consen 375 RLQGEIEDL 383 (775)
T ss_pred HHHHHHHHH
Confidence 655544443
No 255
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=71.18 E-value=53 Score=36.46 Aligned_cols=18 Identities=33% Similarity=0.398 Sum_probs=11.9
Q ss_pred hhccccHHHHHHHHHHhh
Q 019459 303 NAQKQTREETLRKAEEIF 320 (340)
Q Consensus 303 NAhkQTREETL~KA~eIF 320 (340)
=|-|||-|-+|..-+.=|
T Consensus 614 KANKqTAEvALanLKsKY 631 (717)
T PF09730_consen 614 KANKQTAEVALANLKSKY 631 (717)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356778888887665443
No 256
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=71.14 E-value=42 Score=39.49 Aligned_cols=69 Identities=17% Similarity=0.298 Sum_probs=40.3
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019459 41 MAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLA 118 (340)
Q Consensus 41 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDva 118 (340)
+.+..++..||.|+.+|+-++.+-+ ++.-+++...|+..++-.+...+. +..+...+.+.|+++.+.|.
T Consensus 1011 ~~l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~~l~se~~~-------~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1011 RNLERKLKELERELSELDKQILEAD--IKSVKEERVKLEEEREKLSSEKNL-------LLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHhhhHhhH-------HHHHHHHHHHHHHHHHHHhh
Confidence 4556666666666666666666555 555555555555544444444333 55555556666666666665
No 257
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=71.07 E-value=27 Score=35.54 Aligned_cols=7 Identities=29% Similarity=0.653 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 019459 74 RLSHVQK 80 (340)
Q Consensus 74 r~~~le~ 80 (340)
.+..++.
T Consensus 244 ~i~~l~~ 250 (457)
T TIGR01000 244 QIDQLQK 250 (457)
T ss_pred HHHHHHH
Confidence 3333333
No 258
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=70.92 E-value=1.1e+02 Score=30.20 Aligned_cols=57 Identities=25% Similarity=0.329 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019459 71 LEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQL 127 (340)
Q Consensus 71 Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~L 127 (340)
+-+++-.||.+-.....|...+-.-...++.||..+...+.++.+.+.|||.+-|+|
T Consensus 249 m~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaL 305 (309)
T PF09728_consen 249 MSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRAL 305 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555544444556788888888899999999999999998876
No 259
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=70.81 E-value=24 Score=34.95 Aligned_cols=62 Identities=32% Similarity=0.404 Sum_probs=36.3
Q ss_pred CCchhhhHHHHHHHHHH-----------------------HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 26 TDPYDQLDLARKITSMA-----------------------IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVY 82 (340)
Q Consensus 26 ~DPyEQLdlArkIts~A-----------------------~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L 82 (340)
.||.-+-+.++++ |.| ...++..+|.+....+.+|.++...+.++++++..|+.++
T Consensus 180 ~~p~F~~e~v~~~-S~Aa~~Lc~WV~A~~~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~ 258 (344)
T PF12777_consen 180 KNPDFNPEKVRKA-SKAAGSLCKWVRAMVKYYEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEY 258 (344)
T ss_dssp TSTTSSHHHHHHH--TTHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHH-hhcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677677777766 444 1234555566666666666666666666666666666555
Q ss_pred HHHHHH
Q 019459 83 QEADSK 88 (340)
Q Consensus 83 ~e~~~r 88 (340)
.++...
T Consensus 259 ~~~~~e 264 (344)
T PF12777_consen 259 EEAQKE 264 (344)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 260
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=70.78 E-value=49 Score=25.89 Aligned_cols=70 Identities=17% Similarity=0.245 Sum_probs=37.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 50 LETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 50 LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
.+.+++..++.+.+....+..|+..+..+...+.... . .....+-.....-...|...++.+...|..++
T Consensus 3 a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~-~-~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 72 (123)
T PF02050_consen 3 AEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQ-Q-GVSVAQLRNYQRYISALEQAIQQQQQELERLE 72 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------S-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666655555555 1 22224444455555666666666666555544
No 261
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=70.73 E-value=32 Score=26.52 Aligned_cols=54 Identities=20% Similarity=0.386 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 62 YEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 62 aEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
.+|...|.+++..+.+++..|.+..--++.+ =..+|..+...|+....++.+|+
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~------p~s~r~~~~~kl~~yr~~l~~lk 74 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVRSL------PPSERNQYKSKLRSYRSELKKLK 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888888877777777766666553 12788888888888888888764
No 262
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=70.73 E-value=81 Score=28.44 Aligned_cols=71 Identities=20% Similarity=0.252 Sum_probs=54.3
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019459 47 VSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDL 117 (340)
Q Consensus 47 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDv 117 (340)
+..+-.+++.||.+-++....++++.+++......|..+...+..|.-..+|+.+=..-.-.-.+.+.--.
T Consensus 69 le~~~~qv~~Lr~~e~~le~~~~~a~~~~~~e~~~l~~a~~~~~~a~r~~eKf~eL~~~~~~e~~~~~e~~ 139 (152)
T PF07321_consen 69 LEKWQQQVASLREREAELEQQLAEAEEQLEQERQALEEARKQLQQARRQQEKFAELAEQEQAEARQQREYQ 139 (152)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455778888888888888888888888888888888888888888888887776666655555554433
No 263
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=70.69 E-value=55 Score=28.75 Aligned_cols=73 Identities=15% Similarity=0.165 Sum_probs=49.7
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019459 47 VSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQ 126 (340)
Q Consensus 47 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~ 126 (340)
|.+|-.....|-++|+--.+.|..|++.+...+..|......|. .|-.+++.+.+.+.+++.=.+.
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~--------------~Le~~~~~~~~e~~~~~~~~~~ 87 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQ--------------ELEKNAKALEREREEEEKKAHP 87 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhccch
Confidence 34444555666667777777788888888888887777666664 4666777777777777665567
Q ss_pred HHhhccc
Q 019459 127 LMQSLND 133 (340)
Q Consensus 127 LmqSLqe 133 (340)
+++-...
T Consensus 88 vL~~~~~ 94 (160)
T PF13094_consen 88 VLQLDDS 94 (160)
T ss_pred hhccccc
Confidence 7765433
No 264
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=70.31 E-value=6.6 Score=30.46 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=22.6
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLIC 69 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~ 69 (340)
+..|+.-||+||.++++.++.|..+-.
T Consensus 26 L~~RIa~L~aEI~R~~~~~~~K~a~r~ 52 (59)
T PF06698_consen 26 LEERIALLEAEIARLEAAIAKKSASRA 52 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999877643
No 265
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=70.26 E-value=55 Score=30.87 Aligned_cols=86 Identities=20% Similarity=0.235 Sum_probs=58.5
Q ss_pred hcCCCCc-hhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019459 22 AVIPTDP-YDQLDLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLA 100 (340)
Q Consensus 22 svLP~DP-yEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~ 100 (340)
.-+|..+ +.|..+.+.-+.++=+.+... ..++.++.+|.+.|+++.+++..||.. .+++..-+++++++.
T Consensus 44 ~~~~~~~~~~~~e~~k~~~~i~da~~dq~-----~~~q~e~~~~lk~~a~~~E~lk~lE~~----kae~k~~~e~re~~l 114 (192)
T COG3334 44 AELAEKKAAAQSEIEKFCANIADAAADQL-----YALQKELLEKLKDLAEVNERLKALEKK----KAELKDLEEEREGIL 114 (192)
T ss_pred hhcccccchhhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 4445544 377777777777766666655 778888888888888888888887763 667777777777766
Q ss_pred ----HHHHHHHHHHHHHhhh
Q 019459 101 ----KERDSLAMTARNLSRD 116 (340)
Q Consensus 101 ----~E~~sLa~TvKKL~RD 116 (340)
.|.+-|+.+++++-=|
T Consensus 115 ~~~qae~~klv~iY~~Mkp~ 134 (192)
T COG3334 115 RSKQAEDGKLVKIYSKMKPD 134 (192)
T ss_pred HHHHhhhhHHHHHHHcCChh
Confidence 3333455565555443
No 266
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=70.16 E-value=46 Score=29.06 Aligned_cols=72 Identities=17% Similarity=0.241 Sum_probs=54.1
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRL--ICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~--i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
..=|-.|=.|..++.+...+.+.. ..++..++..|...|..+..++ ..++..+++.....+..+.+-+|-||
T Consensus 66 P~tvLALLDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~------~~~~~~~~~~~e~~~~~~~~riaEle 139 (139)
T PF13935_consen 66 PATVLALLDELERAQQRIAELEQECENEDIALDVQKLRVELEAAEKRI------AAELAEQAEAYEGEIADYAKRIAELE 139 (139)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhHHHHHHHHHHHHHHHHHHhcC
Confidence 555667777777777777777766 8888888888888888877777 34577778888888888877777765
No 267
>PRK00736 hypothetical protein; Provisional
Probab=69.92 E-value=33 Score=26.85 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019459 68 ICELEERLSHVQKVYQEADSKL 89 (340)
Q Consensus 68 i~~Lq~r~~~le~~L~e~~~rl 89 (340)
|.+|+.|++-.|..+.+.|.-+
T Consensus 7 i~~LE~klafqe~tie~Ln~~v 28 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQL 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666665555444444
No 268
>PRK12704 phosphodiesterase; Provisional
Probab=69.92 E-value=90 Score=33.13 Aligned_cols=14 Identities=21% Similarity=0.468 Sum_probs=8.9
Q ss_pred HHHHHHHHhhcccc
Q 019459 121 ETFKRQLMQSLNDD 134 (340)
Q Consensus 121 E~FKk~LmqSLqeD 134 (340)
|..|+.||..+.++
T Consensus 153 ~ea~~~l~~~~~~~ 166 (520)
T PRK12704 153 EEAKEILLEKVEEE 166 (520)
T ss_pred HHHHHHHHHHHHHH
Confidence 44577777777554
No 269
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=69.85 E-value=49 Score=38.13 Aligned_cols=79 Identities=20% Similarity=0.316 Sum_probs=61.2
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019459 41 MAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 41 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKL 120 (340)
.-+.-++...|.++..|+..+..+...+.+|++++......|.+.+..+.. |-+|+.-|-..+++.++-.+|+
T Consensus 625 ~~l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~-------~~~er~~~~~~~~~~~~r~~~i 697 (1072)
T KOG0979|consen 625 PVLEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKL-------LKRERTKLNSELKSYQQRKERI 697 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHHHHHH
Confidence 334456667788888999999999999999999998888888888877765 7777777777777777777777
Q ss_pred HHHHHH
Q 019459 121 ETFKRQ 126 (340)
Q Consensus 121 E~FKk~ 126 (340)
|+.+.-
T Consensus 698 e~~~~~ 703 (1072)
T KOG0979|consen 698 ENLVVD 703 (1072)
T ss_pred HHHHHH
Confidence 776443
No 270
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=69.80 E-value=14 Score=36.18 Aligned_cols=87 Identities=17% Similarity=0.141 Sum_probs=50.0
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019459 42 AIASRVSKLETETGTMRQMLYEK-------DRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLS 114 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEK-------d~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~ 114 (340)
+...-++.|+.+...++.+|++- --.+..|+.++..|+.++.+-..++..... ..-+.+......|.
T Consensus 211 ~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~------~~l~~~~~~~~~L~ 284 (362)
T TIGR01010 211 AQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGGLG------DSLNEQTADYQRLV 284 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCC------ccHHHHHHHHHHHH
Confidence 34444555555555555555543 334566777777777777776666643221 12234444667788
Q ss_pred hhHHHHHHHHHHHHhhcccc
Q 019459 115 RDLAKLETFKRQLMQSLNDD 134 (340)
Q Consensus 115 RDvaKLE~FKk~LmqSLqeD 134 (340)
||++=-+..=..+++.+++-
T Consensus 285 re~~~a~~~y~~~l~r~~~a 304 (362)
T TIGR01010 285 LQNELAQQQLKAALTSLQQT 304 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88776655555566655443
No 271
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=69.69 E-value=97 Score=32.50 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=42.5
Q ss_pred HHHHHHHHhhhhHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 39 TSMAIASRVSKLETETGTMRQMLYEK-------DRLICELEERLSHVQKVYQEADSKLK 90 (340)
Q Consensus 39 ts~A~atRVs~LE~E~~~LR~~laEK-------d~~i~~Lq~r~~~le~~L~e~~~rl~ 90 (340)
++.++.+-|++||.|...++.+|+.- .-.|..|+.|+..||.++.+-.+|+.
T Consensus 280 ~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 280 TITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLS 338 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Confidence 45567788889999988888887755 44689999999999999999888885
No 272
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=69.68 E-value=48 Score=31.46 Aligned_cols=86 Identities=17% Similarity=0.261 Sum_probs=63.4
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHhhhHHHH
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKL----AKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL----~~E~~sLa~TvKKL~RDvaKL 120 (340)
+.|+.+|.++..|...+.+ +..+-.++-....+|..|+..+...+.|-.+. -.+-.-..++++|...-+..|
T Consensus 2 ~~l~~~E~d~~~L~~~~~k----L~K~c~~~~~a~~~~~~A~~~F~~~L~ef~~~~f~~~~dDe~~~~~l~kFs~~l~El 77 (215)
T cd07601 2 SLLNVFEEDALQLSSYMNQ----LLQACKRVYDAQNELKSATQALSKKLGEYEKQKFELGRDDEILVSTLKQFSKVVDEL 77 (215)
T ss_pred chHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHH
Confidence 4578889999988877643 44445566667777888888888888887655 444444557889999999999
Q ss_pred HHHHHHHHhhcccc
Q 019459 121 ETFKRQLMQSLNDD 134 (340)
Q Consensus 121 E~FKk~LmqSLqeD 134 (340)
++++..|+..+++-
T Consensus 78 ~~~~~~L~~q~~~~ 91 (215)
T cd07601 78 STMHSTLSSQLADT 91 (215)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888877543
No 273
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=69.65 E-value=1e+02 Score=31.74 Aligned_cols=31 Identities=13% Similarity=0.037 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Q 019459 31 QLDLARKITSMAIASRVSKLETETGTMRQML 61 (340)
Q Consensus 31 QLdlArkIts~A~atRVs~LE~E~~~LR~~l 61 (340)
+||-...=...|+..++...+..+..|+..|
T Consensus 263 rLd~l~~RL~~am~~~L~~~r~rL~~L~~RL 293 (432)
T TIGR00237 263 RLDGFNVRLHRAFDTLLHQKKARLEQLVASL 293 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555566677777777777777766655
No 274
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=69.52 E-value=56 Score=26.08 Aligned_cols=59 Identities=14% Similarity=0.174 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 31 QLDLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKL 89 (340)
Q Consensus 31 QLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl 89 (340)
||--|.--..-.|..+-...+.....|+..+..-.+..+.|.++|..|...+...+..+
T Consensus 7 qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql 65 (70)
T PF04899_consen 7 QLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQL 65 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555666666666666666766666666666666666666666665555544
No 275
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=69.42 E-value=45 Score=37.09 Aligned_cols=78 Identities=23% Similarity=0.322 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-Hhh
Q 019459 52 TETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQL-MQS 130 (340)
Q Consensus 52 ~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~L-mqS 130 (340)
.++..|+.++.. +.++.+|...+..++..|+.....+ ..-........+.+...++++...+++++..+..| .+.
T Consensus 481 ~el~~l~~~i~~-~~~~~~l~~e~~~l~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~e~l~~~~e~~~~~~~~~~~~~ 556 (908)
T COG0419 481 LELEELEEELSR-EKEEAELREEIEELEKELRELEEEL---IELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQ 556 (908)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 356666666662 6666666666666666666655555 22223344445566666666666666666666665 444
Q ss_pred ccc
Q 019459 131 LND 133 (340)
Q Consensus 131 Lqe 133 (340)
|++
T Consensus 557 l~~ 559 (908)
T COG0419 557 LKE 559 (908)
T ss_pred HHH
Confidence 433
No 276
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=69.32 E-value=27 Score=29.39 Aligned_cols=35 Identities=6% Similarity=0.001 Sum_probs=25.5
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQK 80 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~ 80 (340)
+...|+.++..+++++++.++...+|++++..|..
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 56777777777777777777777777777776643
No 277
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=69.29 E-value=31 Score=34.35 Aligned_cols=74 Identities=20% Similarity=0.223 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhhhHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019459 38 ITSMAIASRVSKLETETG-------TMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTA 110 (340)
Q Consensus 38 Its~A~atRVs~LE~E~~-------~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~Tv 110 (340)
|--+|--.|+..||.|.+ .||..-.|-+.++.+|-+-|+-....+.-..++|+...++...|.+++..+...|
T Consensus 229 lG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav 308 (330)
T KOG2991|consen 229 LGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAV 308 (330)
T ss_pred HHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344667788999998865 5667777777777777777777777777777777776666666766666655544
Q ss_pred H
Q 019459 111 R 111 (340)
Q Consensus 111 K 111 (340)
+
T Consensus 309 ~ 309 (330)
T KOG2991|consen 309 G 309 (330)
T ss_pred c
Confidence 3
No 278
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=69.11 E-value=1.6 Score=48.48 Aligned_cols=93 Identities=24% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHHHHH
Q 019459 41 MAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKI--------FIDDNAKLAKERDSLAMTARN 112 (340)
Q Consensus 41 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~--------a~de~~kL~~E~~sLa~TvKK 112 (340)
.++..++..||.|+..||.++.|-.....+|+.+++.+..+|.+...++.. ..+-+.||..+-..|-..+..
T Consensus 260 ~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~ 339 (859)
T PF01576_consen 260 QALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEE 339 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999999999999999999999999999999999988877755 234556888888888888999
Q ss_pred HhhhHHHHHHHHHHHHhhccc
Q 019459 113 LSRDLAKLETFKRQLMQSLND 133 (340)
Q Consensus 113 L~RDvaKLE~FKk~LmqSLqe 133 (340)
++.-+++||.-|+.|..=+.|
T Consensus 340 ~~~~~~~LeK~k~rL~~EleD 360 (859)
T PF01576_consen 340 ANAKVSSLEKTKKRLQGELED 360 (859)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998887665543
No 279
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=69.01 E-value=65 Score=26.60 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=14.5
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEE 73 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~ 73 (340)
+.+.|..+|...+..|+..+.+.+....+|+.
T Consensus 32 ~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~ 63 (99)
T PF10046_consen 32 ATSLKYKKMKDIAAGLEKNLEDLNQKYEELQP 63 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555444444443333333
No 280
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=68.90 E-value=41 Score=40.91 Aligned_cols=69 Identities=23% Similarity=0.300 Sum_probs=47.7
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLS 114 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~ 114 (340)
+-+|+-.|+.+++.||.++.+|...+++|... ++..|..+.-.+....-+..++..+.+++...+-+|.
T Consensus 803 ~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~---~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le 871 (1822)
T KOG4674|consen 803 CESRIKELERELQKLKKKLQEKSSDLRELTNS---LEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLE 871 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778889999999999999999999988764 5567777777776644444444444444444444443
No 281
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=68.81 E-value=73 Score=32.47 Aligned_cols=38 Identities=8% Similarity=0.149 Sum_probs=22.8
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQK 80 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~ 80 (340)
+.+|...+++++..+.+++...+..+..++..+..++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 200 (457)
T TIGR01000 163 SQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISN 200 (457)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556666666666666666666666666555554433
No 282
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=68.60 E-value=25 Score=26.56 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=16.1
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHV 78 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~l 78 (340)
++..+..|+..|..++++-...+.+|++++..|
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555555554444433
No 283
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=68.50 E-value=55 Score=32.85 Aligned_cols=50 Identities=12% Similarity=0.186 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019459 52 TETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAK 101 (340)
Q Consensus 52 ~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~ 101 (340)
..++.|...|+.|.+.....|+.|.+|-.++.+...|+++---||++|..
T Consensus 213 ~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q 262 (306)
T PF04849_consen 213 QQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQ 262 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34677888888888888889999999999999999999887777766654
No 284
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=68.43 E-value=1.1e+02 Score=33.04 Aligned_cols=102 Identities=22% Similarity=0.276 Sum_probs=57.9
Q ss_pred chhhhHHHHHHHHHHHHHHhhh-----------hHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHHHHH
Q 019459 28 PYDQLDLARKITSMAIASRVSK-----------LETETGTMRQMLYEKDRL---ICELEERLSHVQKV---YQEADSKLK 90 (340)
Q Consensus 28 PyEQLdlArkIts~A~atRVs~-----------LE~E~~~LR~~laEKd~~---i~~Lq~r~~~le~~---L~e~~~rl~ 90 (340)
-|-||-||+|+=..-+-.||.. |+.|+..++..|..=..+ -.+-++.|..|+.. |..+..|+.
T Consensus 196 ~F~~lsL~f~~D~~TLe~R~~~~eR~RdlaEeNl~kEi~~~~~~l~~l~~lc~~d~e~~e~~~kl~~~l~~l~~~~~rvs 275 (538)
T PF05781_consen 196 EFLRLSLGFKCDRFTLEKRLKLEERSRDLAEENLKKEIENCLKLLESLAPLCWEDNESREIIQKLQKSLDVLHQCATRVS 275 (538)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778999999999999999864 455566665554322111 01222223333222 334444443
Q ss_pred HhHHHH------HHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHh
Q 019459 91 IFIDDN------AKLAKERDSLAMTARNLSRD----LAKLETFKRQLMQ 129 (340)
Q Consensus 91 ~a~de~------~kL~~E~~sLa~TvKKL~RD----vaKLE~FKk~Lmq 129 (340)
-.-|.- .++.+--...++-|-.|.|- -+.|+-|||.|+|
T Consensus 276 s~AE~lGAv~QE~R~SkAvevM~qhvenLkr~~~kehaeL~E~k~~l~q 324 (538)
T PF05781_consen 276 SRAEMLGAVHQESRVSKAVEVMIQHVENLKRMYEKEHAELEELKKLLLQ 324 (538)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 322222 33444445566667777664 4559999999887
No 285
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.41 E-value=64 Score=26.35 Aligned_cols=50 Identities=22% Similarity=0.259 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019459 64 KDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNL 113 (340)
Q Consensus 64 Kd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL 113 (340)
-.-.|.+|.++-.+|..+.+++...-.....||+.|..|-..-..-++.|
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777776666665555566666666666655555544
No 286
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=68.33 E-value=50 Score=36.91 Aligned_cols=55 Identities=15% Similarity=0.168 Sum_probs=48.2
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019459 47 VSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAK 101 (340)
Q Consensus 47 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~ 101 (340)
.+=|++|.++|++.|.+.....+++++.+..+..+++....|.++.+++-.++-.
T Consensus 706 ~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~ 760 (961)
T KOG4673|consen 706 LSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKR 760 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999998877666543
No 287
>COG5570 Uncharacterized small protein [Function unknown]
Probab=68.30 E-value=14 Score=28.49 Aligned_cols=48 Identities=19% Similarity=0.131 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019459 66 RLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNL 113 (340)
Q Consensus 66 ~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL 113 (340)
.++++|++|...||++++|+..+=.---.....|..-+=.|-..+.||
T Consensus 5 shl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkL 52 (57)
T COG5570 5 SHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKL 52 (57)
T ss_pred HHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888999888887654332223333444443444444443
No 288
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=68.15 E-value=46 Score=32.95 Aligned_cols=59 Identities=27% Similarity=0.300 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 019459 57 MRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSR 115 (340)
Q Consensus 57 LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~R 115 (340)
+|.+|.+-.+.+.+.++++...+..|.+.+++|.....+..+..+|+..|...++...+
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~ 277 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETER 277 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555555555555555555444445555555555555444443
No 289
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=67.93 E-value=31 Score=34.92 Aligned_cols=55 Identities=20% Similarity=0.313 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 019459 66 RLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFK 124 (340)
Q Consensus 66 ~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FK 124 (340)
+.+..|+++++.++..+.+...+|.. +.|..+-+..|..++.++.+.++.++.|.
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~----~~k~~~k~~~~~~q~~~~~k~~~~~~~~~ 296 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEK----NPKKKNKLKELEEQLASLEKRIEEAEELI 296 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----CcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777766666666543 22666666777777777777777777764
No 290
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=67.86 E-value=23 Score=35.64 Aligned_cols=93 Identities=17% Similarity=0.180 Sum_probs=58.1
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hH--HHHHHHHHHHHHHHHHHHHHhhhH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKI--FI--DDNAKLAKERDSLAMTARNLSRDL 117 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~--a~--de~~kL~~E~~sLa~TvKKL~RDv 117 (340)
|+-.+...-=.-++.|+|.|..=...-.+|..|++.||..|.-....+.. |- +.+.+---||..|+.-+-+-.+.-
T Consensus 20 AlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdLaa~i~etkeeN 99 (389)
T KOG4687|consen 20 ALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTERQDLAADIEETKEEN 99 (389)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHHHHHHHHHHHHh
Confidence 33333333333456677777666666667777777777766544333322 11 233444457788888888888888
Q ss_pred HHHHHHHHHHHhhcccc
Q 019459 118 AKLETFKRQLMQSLNDD 134 (340)
Q Consensus 118 aKLE~FKk~LmqSLqeD 134 (340)
-||-+=+..|++.+.|=
T Consensus 100 lkLrTd~eaL~dq~adL 116 (389)
T KOG4687|consen 100 LKLRTDREALLDQKADL 116 (389)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 88888888888776543
No 291
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=67.82 E-value=62 Score=37.40 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019459 70 ELEERLSHVQKVYQEADSKL 89 (340)
Q Consensus 70 ~Lq~r~~~le~~L~e~~~rl 89 (340)
.|.++...++..|+..+.-|
T Consensus 480 ~l~~~~~~~k~~L~~~~~el 499 (1041)
T KOG0243|consen 480 LLKEEKEKLKSKLQNKNKEL 499 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444
No 292
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=67.73 E-value=76 Score=30.03 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=21.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 51 ETETGTMRQMLYEKDRLICELEERLSH 77 (340)
Q Consensus 51 E~E~~~LR~~laEKd~~i~~Lq~r~~~ 77 (340)
+-|..+||.+|++=|..+...++..+.
T Consensus 95 dwEevrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 95 DWEEVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 348889999998888887777777664
No 293
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=67.68 E-value=61 Score=35.92 Aligned_cols=83 Identities=27% Similarity=0.317 Sum_probs=64.4
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
++...+++|+.|...+-+.+..=...+.++-..+..|...+-...++|.++...-..+..|.+-+....++|.-+ +|
T Consensus 535 ~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE---~e 611 (698)
T KOG0978|consen 535 GLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEE---LE 611 (698)
T ss_pred HhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 566788888889888888888888888888888888888888888888888777777777777776666666544 44
Q ss_pred HHHHHH
Q 019459 122 TFKRQL 127 (340)
Q Consensus 122 ~FKk~L 127 (340)
.||+.|
T Consensus 612 ~L~~kl 617 (698)
T KOG0978|consen 612 RLKRKL 617 (698)
T ss_pred HHHHHH
Confidence 445554
No 294
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=67.55 E-value=19 Score=37.27 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019459 104 DSLAMTARNLSRDLAKLETFKRQLMQSL 131 (340)
Q Consensus 104 ~sLa~TvKKL~RDvaKLE~FKk~LmqSL 131 (340)
++++..+|+|+.+|.-||.+-|+|.--|
T Consensus 245 ~~~~~~i~~lq~EV~~LEeLsrqLFLE~ 272 (462)
T KOG2417|consen 245 NTLSSDIKLLQQEVEPLEELSRQLFLEL 272 (462)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999999987544
No 295
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=67.54 E-value=1.1e+02 Score=29.38 Aligned_cols=72 Identities=10% Similarity=0.211 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019459 34 LARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDS 105 (340)
Q Consensus 34 lArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~s 105 (340)
++.-|++-++..-+..+..|+..++.++.+-+..+..|++-+..+-..+.+..+.+.+..+.-....+.+..
T Consensus 226 ~~~~v~~g~~~i~~A~~~~~~~~~~A~~~~~~a~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~ 297 (306)
T PF04888_consen 226 VANSVAQGGIQIASADLQKEAEKLQADQMELQAMMEQLQSIMDQAIKQFKKLMESFQQIMKSISQIIQQSGD 297 (306)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455666666677777777777766666666666666655555555555555544444444443333
No 296
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=67.38 E-value=1e+02 Score=29.39 Aligned_cols=24 Identities=33% Similarity=0.338 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Q 019459 71 LEERLSHVQKVYQEADSKLKIFID 94 (340)
Q Consensus 71 Lq~r~~~le~~L~e~~~rl~~a~d 94 (340)
+...+..|+..+.++...+..+..
T Consensus 101 ~~~~~~~l~~~~~~~~~~l~~~~~ 124 (256)
T PF14932_consen 101 LSQELSELEGKEEEAQKKLKKAQK 124 (256)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Confidence 444555555555555555554443
No 297
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=67.31 E-value=49 Score=27.17 Aligned_cols=61 Identities=21% Similarity=0.356 Sum_probs=43.3
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKR 125 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk 125 (340)
++.++.+|+.+.|.+ |+++|.|+-.||.++.+ -||.-....|+.++=+.+.|-.|-+
T Consensus 2 KleKi~~eieK~k~K-------iae~Q~rlK~Le~qk~E----------------~EN~EIv~~VR~~~mtp~eL~~~L~ 58 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEK-------IAELQARLKELEAQKTE----------------AENLEIVQMVRSMKMTPEELAAFLR 58 (83)
T ss_pred hHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 455666777766654 55666666666654443 3677788899999999999999988
Q ss_pred HHHh
Q 019459 126 QLMQ 129 (340)
Q Consensus 126 ~Lmq 129 (340)
....
T Consensus 59 ~~~~ 62 (83)
T PF14193_consen 59 AMKS 62 (83)
T ss_pred HHHh
Confidence 7644
No 298
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=67.13 E-value=66 Score=30.57 Aligned_cols=77 Identities=23% Similarity=0.305 Sum_probs=38.7
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHhhhHH
Q 019459 53 ETGTMRQMLYE-------KDRLICELEERLSHVQKVYQEADSKLKIFID-------DNAKLAKERDSLAMTARNLSRDLA 118 (340)
Q Consensus 53 E~~~LR~~laE-------Kd~~i~~Lq~r~~~le~~L~e~~~rl~~a~d-------e~~kL~~E~~sLa~TvKKL~RDva 118 (340)
||+-|+++|-| |+..|-.|+..+..+-..+...+.++....+ |.+...+|-...-+-+.-|...|.
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~ 90 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLG 90 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhh
Confidence 45555555443 6666665655555554444444444433322 444445555555555555555566
Q ss_pred HHH----HHHHHHHh
Q 019459 119 KLE----TFKRQLMQ 129 (340)
Q Consensus 119 KLE----~FKk~Lmq 129 (340)
+|| .+|..+..
T Consensus 91 ~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 91 QLEAELAELREELAC 105 (202)
T ss_pred hhHHHHHHHHHHHHh
Confidence 655 44444444
No 299
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=67.04 E-value=1.8e+02 Score=31.68 Aligned_cols=80 Identities=19% Similarity=0.130 Sum_probs=66.1
Q ss_pred chhHHhcCCCCchhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 019459 17 PDEVLAVIPTDPYDQLDLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDN 96 (340)
Q Consensus 17 p~eilsvLP~DPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~ 96 (340)
-.+=+++.=.|=-++.-+..++.-.-+.-+...-|-+.-.|-..+.++...|.+++..+..++-+|..+.++.....++.
T Consensus 404 ~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~ 483 (581)
T KOG0995|consen 404 NPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEA 483 (581)
T ss_pred CCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556667788888999999999999999999999999999999999999999999999999999987755544
No 300
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=67.03 E-value=94 Score=34.18 Aligned_cols=71 Identities=15% Similarity=0.287 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHhhccccC
Q 019459 65 DRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE---TFKRQLMQSLNDDN 135 (340)
Q Consensus 65 d~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE---~FKk~LmqSLqeD~ 135 (340)
++.|..|+.++..|...+.+++..+....++.....++...+..-++.++.+|-.-+ .-+|.|-+-++|=-
T Consensus 240 ~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLk 313 (670)
T KOG0239|consen 240 KKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELK 313 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333777777777777777777777777777777777777777666666666666555 66666666665543
No 301
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=67.02 E-value=64 Score=34.88 Aligned_cols=86 Identities=27% Similarity=0.256 Sum_probs=69.7
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHhhhHHH
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLA----MTARNLSRDLAK 119 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa----~TvKKL~RDvaK 119 (340)
+.-|.++|.|+..|++.+.+=...+..=.-.++.|+..|.+....|....++++++++.-.+|- +.=-+|.|=+.|
T Consensus 346 ~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~ 425 (570)
T COG4477 346 LGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSK 425 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999888889999999999999999999999988887766553 333456666777
Q ss_pred HHHHHHHHHh
Q 019459 120 LETFKRQLMQ 129 (340)
Q Consensus 120 LE~FKk~Lmq 129 (340)
|.+.||-+-.
T Consensus 426 l~eikR~mek 435 (570)
T COG4477 426 LHEIKRYMEK 435 (570)
T ss_pred HHHHHHHHHH
Confidence 8888776655
No 302
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=66.98 E-value=75 Score=31.72 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019459 78 VQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQ 126 (340)
Q Consensus 78 le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~ 126 (340)
+|.+..+.-....+.++|+..+-.-++.|-.-|++|..--.-||+-||+
T Consensus 82 ~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRa 130 (333)
T KOG1853|consen 82 QEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRA 130 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhh
Confidence 3334444444444444444444444455555555554444444444443
No 303
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=66.86 E-value=70 Score=31.58 Aligned_cols=79 Identities=22% Similarity=0.294 Sum_probs=50.9
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----h
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRLICEL-----EERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNL----S 114 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~i~~L-----q~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL----~ 114 (340)
..|+.-|--|-.-+|.||-- ++.++- .+|.+++|.+.. -..|||.+|+.||++|-..-+.| +
T Consensus 58 r~RL~HLS~EEK~~RrKLKN--RVAAQtaRDrKKaRm~eme~~i~-------dL~een~~L~~en~~Lr~~n~~L~~~n~ 128 (292)
T KOG4005|consen 58 RRRLDHLSWEEKVQRRKLKN--RVAAQTARDRKKARMEEMEYEIK-------DLTEENEILQNENDSLRAINESLLAKNH 128 (292)
T ss_pred HHhhcccCHHHHHHHHHHHH--HHHHhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 45677777777777887743 333332 346665655444 44567777888888877665555 3
Q ss_pred hhHHHHHHHHHHHHhhc
Q 019459 115 RDLAKLETFKRQLMQSL 131 (340)
Q Consensus 115 RDvaKLE~FKk~LmqSL 131 (340)
.=+..||-++..||.+=
T Consensus 129 el~~~le~~~~~l~~~~ 145 (292)
T KOG4005|consen 129 ELDSELELLRQELAELK 145 (292)
T ss_pred HHHHHHHHHHHHHHhhH
Confidence 34567888888888764
No 304
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=66.70 E-value=71 Score=30.46 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=22.7
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKL 89 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl 89 (340)
..|+..||..+..+++.+.+=......|+..+..|+..+.+..++.
T Consensus 91 l~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~ 136 (225)
T COG1842 91 LEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKK 136 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555554444444444444
No 305
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=66.66 E-value=26 Score=40.49 Aligned_cols=55 Identities=25% Similarity=0.408 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHH------HHhhhhHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 019459 33 DLARKITSMAIA------SRVSKLETETGTMRQMLYEKDR-LICELEERLSHVQKVYQEADS 87 (340)
Q Consensus 33 dlArkIts~A~a------tRVs~LE~E~~~LR~~laEKd~-~i~~Lq~r~~~le~~L~e~~~ 87 (340)
|-|+||..+|+. .-+..|-.|+..||.+|..+++ ...+|++|+.++|.-+.|.+.
T Consensus 346 drAkrIvN~avvNedpnarvirElReEve~lr~qL~~ae~~~~~el~e~l~esekli~ei~~ 407 (1714)
T KOG0241|consen 346 DRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIKEITV 407 (1714)
T ss_pred HHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHh
Confidence 789999999983 4456677899999999999654 567899999988887777654
No 306
>PRK12704 phosphodiesterase; Provisional
Probab=66.44 E-value=1.8e+02 Score=30.86 Aligned_cols=9 Identities=33% Similarity=0.578 Sum_probs=4.7
Q ss_pred HHHHHHHHh
Q 019459 277 KEFFRQARS 285 (340)
Q Consensus 277 KEFFRQARs 285 (340)
-|....++.
T Consensus 285 ee~~~~~~~ 293 (520)
T PRK12704 285 EEMVEKARK 293 (520)
T ss_pred HHHHHHHHH
Confidence 455555553
No 307
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=66.42 E-value=70 Score=28.82 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=12.4
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHH
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRLI 68 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~i 68 (340)
--||..|-.+...++.++.+.....
T Consensus 117 I~r~~~li~~l~~~~~~~~~~~kq~ 141 (192)
T PF05529_consen 117 IRRVHSLIKELIKLEEKLEALKKQA 141 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544443333
No 308
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=66.29 E-value=1.1e+02 Score=34.02 Aligned_cols=89 Identities=21% Similarity=0.233 Sum_probs=42.8
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------------HHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKER-------------DSLAM 108 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~-------------~sLa~ 108 (340)
++-++.++++.|+--+...+...+-.+..+++++..--..|++....+...++....+..++ ..|..
T Consensus 162 k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~ 241 (716)
T KOG4593|consen 162 KLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEELEA 241 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHH
Confidence 45555566655555555555444444444444443333333333333333333333333333 23444
Q ss_pred HHHHHhhhHHHHHHHHHHHHhh
Q 019459 109 TARNLSRDLAKLETFKRQLMQS 130 (340)
Q Consensus 109 TvKKL~RDvaKLE~FKk~LmqS 130 (340)
.+|+..-.|..||-+++.+|+-
T Consensus 242 i~~~~~dqlqel~~l~~a~~q~ 263 (716)
T KOG4593|consen 242 INKNMKDQLQELEELERALSQL 263 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455567777777777763
No 309
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=66.21 E-value=23 Score=31.42 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=21.5
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 48 SKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 48 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
..|++++..+|..+...+-.+..|+..+..=|.++.....+|.-
T Consensus 76 ~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~ 119 (131)
T PF04859_consen 76 ARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDE 119 (131)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555554444444444444443
No 310
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=65.96 E-value=67 Score=34.97 Aligned_cols=31 Identities=23% Similarity=0.168 Sum_probs=22.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhccccCCC
Q 019459 107 AMTARNLSRDLAKLETFKRQLMQSLNDDNSS 137 (340)
Q Consensus 107 a~TvKKL~RDvaKLE~FKk~LmqSLqeD~~~ 137 (340)
......|.||++-.+..=..|++..+|-.-.
T Consensus 369 e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~ 399 (726)
T PRK09841 369 QQEVLRLSRDVEAGRAVYLQLLNRQQELSIS 399 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678899888888888888888765443
No 311
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=65.93 E-value=44 Score=37.59 Aligned_cols=73 Identities=21% Similarity=0.306 Sum_probs=48.3
Q ss_pred HHHHHHhhhhHhHHHHHHHHH-------HHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019459 41 MAIASRVSKLETETGTMRQML-------YEKDR------------LICELEERLSHVQKVYQEADSKLKIFIDDNAKLAK 101 (340)
Q Consensus 41 ~A~atRVs~LE~E~~~LR~~l-------aEKd~------------~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~ 101 (340)
+|+| |.-|-+|.+.||.+| .|+++ ++..||..--.|+.+|+|+.--+.....-|+.|.|
T Consensus 385 IALA--~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk 462 (861)
T PF15254_consen 385 IALA--MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLK 462 (861)
T ss_pred hHhh--hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHH
Confidence 3444 888888888887654 44433 35667777788888888887777766656666666
Q ss_pred HHHHHHHHHHHHhh
Q 019459 102 ERDSLAMTARNLSR 115 (340)
Q Consensus 102 E~~sLa~TvKKL~R 115 (340)
..+++..--|+|..
T Consensus 463 ~~e~q~~Enk~~~~ 476 (861)
T PF15254_consen 463 VIENQKEENKRLRK 476 (861)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555443
No 312
>PRK10698 phage shock protein PspA; Provisional
Probab=65.88 E-value=55 Score=30.80 Aligned_cols=39 Identities=8% Similarity=0.198 Sum_probs=18.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 51 ETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKL 89 (340)
Q Consensus 51 E~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl 89 (340)
+..+..|+.++..-...+..|+.++..|+..|.++..|-
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~ 136 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQ 136 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555555555555555544443
No 313
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=65.60 E-value=47 Score=36.14 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019459 67 LICELEERLSHVQKVYQEADSKLKIFIDDN--AKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSLNDD 134 (340)
Q Consensus 67 ~i~~Lq~r~~~le~~L~e~~~rl~~a~de~--~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD 134 (340)
.+.-|++|+..+..+|.++..+|..-..++ ..+..|-..+...+..|+.+++.|+.-...|.+-+.++
T Consensus 268 a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~ 337 (726)
T PRK09841 268 SLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKD 337 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344444454444444444444444433333 12223333444445555555555544444444433333
No 314
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=65.57 E-value=53 Score=28.45 Aligned_cols=53 Identities=26% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFID 94 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~d 94 (340)
++-.||..|++++..+|..|..+.-+-.+|+.|+...+..-....-||.-+.+
T Consensus 55 s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~dka~lel~l~e~~~ 107 (107)
T PF09304_consen 55 SRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQKDKAILELKLAEAKD 107 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcC
No 315
>PF14992 TMCO5: TMCO5 family
Probab=65.57 E-value=43 Score=33.25 Aligned_cols=60 Identities=23% Similarity=0.332 Sum_probs=42.1
Q ss_pred HHHHHHHH-----------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------------HHHHHHHhhhHHHHHHH
Q 019459 69 CELEERLS-----------HVQKVYQEADSKLKIFIDDNAKLAKERDSL--------------AMTARNLSRDLAKLETF 123 (340)
Q Consensus 69 ~~Lq~r~~-----------~le~~L~e~~~rl~~a~de~~kL~~E~~sL--------------a~TvKKL~RDvaKLE~F 123 (340)
.+||.++. ++...|+++..++.+++++-+++-++-..+ ++-+|||...+.|+|.-
T Consensus 87 ~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~e 166 (280)
T PF14992_consen 87 QELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEE 166 (280)
T ss_pred hhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67877765 455667788888888888877777776666 34567777777777776
Q ss_pred HHHHH
Q 019459 124 KRQLM 128 (340)
Q Consensus 124 Kk~Lm 128 (340)
|-.++
T Consensus 167 kE~~l 171 (280)
T PF14992_consen 167 KEMLL 171 (280)
T ss_pred HHHHH
Confidence 65543
No 316
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=65.55 E-value=33 Score=27.63 Aligned_cols=46 Identities=22% Similarity=0.157 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019459 68 ICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNL 113 (340)
Q Consensus 68 i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL 113 (340)
...|++++.....+|..+=-+--+|---.++|.+|||.+...+.+|
T Consensus 24 ~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l 69 (70)
T PF08606_consen 24 NFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAEL 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhc
Confidence 4556666665555555554444444555689999999988777665
No 317
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=65.54 E-value=1e+02 Score=31.24 Aligned_cols=59 Identities=24% Similarity=0.317 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHH------------------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 019459 68 ICELEERLSHVQKVY------------------QEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQ 129 (340)
Q Consensus 68 i~~Lq~r~~~le~~L------------------~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~Lmq 129 (340)
..-|+-+++.+++.| |+..+-+....++|-||.-++..|-.+.-.|..|. |.|+.|.-|
T Consensus 53 aETLeln~ealere~eLlaa~gc~a~~e~gterqdLaa~i~etkeeNlkLrTd~eaL~dq~adLhgD~---elfReTeAq 129 (389)
T KOG4687|consen 53 AETLELNLEALERELELLAACGCDAKIEFGTERQDLAADIEETKEENLKLRTDREALLDQKADLHGDC---ELFRETEAQ 129 (389)
T ss_pred HHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhchH---HHHHHHHHH
Confidence 445666666666655 34445556667889999999999999999999885 667766554
No 318
>PRK00295 hypothetical protein; Provisional
Probab=65.44 E-value=34 Score=26.80 Aligned_cols=9 Identities=33% Similarity=0.711 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 019459 72 EERLSHVQK 80 (340)
Q Consensus 72 q~r~~~le~ 80 (340)
++|+..||.
T Consensus 4 e~Ri~~LE~ 12 (68)
T PRK00295 4 EERVTELES 12 (68)
T ss_pred HHHHHHHHH
Confidence 334443333
No 319
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=65.26 E-value=50 Score=38.23 Aligned_cols=16 Identities=50% Similarity=0.451 Sum_probs=5.9
Q ss_pred hHhHHHHHHHHHHHHH
Q 019459 50 LETETGTMRQMLYEKD 65 (340)
Q Consensus 50 LE~E~~~LR~~laEKd 65 (340)
||+-+++||+.|.||-
T Consensus 182 le~kir~LrqElEEK~ 197 (1195)
T KOG4643|consen 182 LEKKIRTLRQELEEKF 197 (1195)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 320
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=65.19 E-value=43 Score=35.88 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 019459 66 RLICELEERLSHVQK 80 (340)
Q Consensus 66 ~~i~~Lq~r~~~le~ 80 (340)
..+.++++||..++.
T Consensus 191 ~~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 191 QDLEEYKKRLEAIKK 205 (555)
T ss_pred hhHHHHHHHHHHHHh
Confidence 344555555555544
No 321
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=65.03 E-value=1.3e+02 Score=33.56 Aligned_cols=48 Identities=13% Similarity=0.219 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 32 LDLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQK 80 (340)
Q Consensus 32 LdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~ 80 (340)
++-|++|..- ...++..|=.++.+.|.++.++.+.+..+++.+..+..
T Consensus 499 i~~A~~~~~~-~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~ 546 (771)
T TIGR01069 499 IEQAKTFYGE-FKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKK 546 (771)
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666542 34455444444444444444444444444433333333
No 322
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=64.76 E-value=81 Score=26.16 Aligned_cols=89 Identities=18% Similarity=0.224 Sum_probs=69.4
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019459 41 MAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 41 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKL 120 (340)
..+..|-..|+..-..|+..+..=+..+.+-..+...+.....+.......-..|..+|..+-..|-.-+.+|...|.++
T Consensus 28 ~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 28 EQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777778888888888888888887777776666666666777777888888888888888888888888
Q ss_pred HHHHHHHHh
Q 019459 121 ETFKRQLMQ 129 (340)
Q Consensus 121 E~FKk~Lmq 129 (340)
..|+.=|.+
T Consensus 108 ~~Y~~fL~~ 116 (126)
T PF13863_consen 108 KKYEEFLEK 116 (126)
T ss_pred HHHHHHHHH
Confidence 888887765
No 323
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=64.73 E-value=1.5e+02 Score=33.86 Aligned_cols=58 Identities=28% Similarity=0.322 Sum_probs=37.0
Q ss_pred HHhcCCCCch------hhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 20 VLAVIPTDPY------DQLDLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 20 ilsvLP~DPy------EQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
||--=+-||+ -++||+--|-.|-=..+|.+-|. ..+++++++.+..-+-||+.+.|..
T Consensus 436 vlHr~~~DPdf~yr~~l~id~~~liD~~vdkak~eeseq--------------kA~e~~kk~~ke~ta~qe~qael~k 499 (1102)
T KOG1924|consen 436 VLHRTGMDPDFKYRFRLDIDLTELIDKMVDKAKAEESEQ--------------KAAELEKKFDKELTARQEAQAELQK 499 (1102)
T ss_pred HHhcCCCCCCcchhhcccCcHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4444466774 35677766666655444433332 5567888888888888888777755
No 324
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=64.71 E-value=89 Score=26.61 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=33.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 019459 91 IFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQS 130 (340)
Q Consensus 91 ~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqS 130 (340)
....++++|..++..|...|++|+-+.+.+|..-|.-...
T Consensus 61 ~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR~~l~~ 100 (117)
T COG2919 61 AQQAELEKLSARNTALEAEIKDLKDGRDYIEERARSELGM 100 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhCC
Confidence 5566778899999999999999999988888888877763
No 325
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=64.61 E-value=1.2e+02 Score=28.13 Aligned_cols=53 Identities=23% Similarity=0.300 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 33 DLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLK 90 (340)
Q Consensus 33 dlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~ 90 (340)
||||.... |....+..+..|..++..-...+..|+.++..|+..+.++..+-.
T Consensus 85 dLAr~Al~-----~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 85 DLARAALI-----EKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45655443 666666666667777777677777777777777777776666543
No 326
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=64.56 E-value=70 Score=33.69 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=37.5
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDL 117 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDv 117 (340)
.-|..|..|+.+.+..+..=..-.......|..|+..|..+..+|..+..+..+.-++-..|..++.+|..+.
T Consensus 309 ~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Ea 381 (522)
T PF05701_consen 309 ASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEA 381 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444445555555555555555555555554455555666666666554
No 327
>PRK00106 hypothetical protein; Provisional
Probab=64.51 E-value=2.1e+02 Score=30.83 Aligned_cols=15 Identities=0% Similarity=0.085 Sum_probs=9.9
Q ss_pred HHHHHHHHhhccccC
Q 019459 121 ETFKRQLMQSLNDDN 135 (340)
Q Consensus 121 E~FKk~LmqSLqeD~ 135 (340)
|..|..||+.+.++-
T Consensus 168 ~eak~~l~~~~~~~~ 182 (535)
T PRK00106 168 AEAREIILAETENKL 182 (535)
T ss_pred HHHHHHHHHHHHHHH
Confidence 346777777776553
No 328
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=64.50 E-value=63 Score=34.93 Aligned_cols=12 Identities=8% Similarity=0.177 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 019459 70 ELEERLSHVQKV 81 (340)
Q Consensus 70 ~Lq~r~~~le~~ 81 (340)
+|+.++..|+.+
T Consensus 320 ~l~~qi~~l~~~ 331 (754)
T TIGR01005 320 AAKSSLADLDAQ 331 (754)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 329
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=64.48 E-value=22 Score=35.88 Aligned_cols=80 Identities=18% Similarity=0.288 Sum_probs=18.6
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLS----HVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLA 118 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~----~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDva 118 (340)
+..++..|..|+..++....+....|..+..+.. .|...+.++..|+..+++....+...-..+...+++|...|.
T Consensus 103 l~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~ 182 (370)
T PF02994_consen 103 LKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLD 182 (370)
T ss_dssp ---------------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4566677788888888666555444444433332 222333344444444333333344433334444444444444
Q ss_pred HHHH
Q 019459 119 KLET 122 (340)
Q Consensus 119 KLE~ 122 (340)
.||.
T Consensus 183 DlEn 186 (370)
T PF02994_consen 183 DLEN 186 (370)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 330
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=64.32 E-value=86 Score=36.98 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=28.4
Q ss_pred CCccchHHHHHHHHhcCCHHHHHHHHHHHHHHhhccccHHHHHHHHH
Q 019459 271 TPRIDGKEFFRQARSRLSYEQFSAFLASIKELNAQKQTREETLRKAE 317 (340)
Q Consensus 271 ~~rvDGKEFFRQARsRLSYEQFsaFLANIKELNAhkQTREETL~KA~ 317 (340)
+.+-+++|-+..++++ |...-+.+|+++...+-.+| |+++.
T Consensus 616 ~~~~~~~e~~~~l~~~-----i~sL~~~~~~~~~~l~k~~e-l~r~~ 656 (1317)
T KOG0612|consen 616 RQRTEISEIIAELKEE-----ISSLEETLKAGKKELLKVEE-LKREN 656 (1317)
T ss_pred HHHHHHHHHHHHHHhH-----HHHHHHHHHhhhhHHHHHHH-HHHHH
Confidence 4666778888888864 45566677777777777777 66653
No 331
>PRK00736 hypothetical protein; Provisional
Probab=64.26 E-value=35 Score=26.73 Aligned_cols=6 Identities=33% Similarity=0.783 Sum_probs=2.2
Q ss_pred HHHHHH
Q 019459 74 RLSHVQ 79 (340)
Q Consensus 74 r~~~le 79 (340)
|+..||
T Consensus 6 Ri~~LE 11 (68)
T PRK00736 6 RLTELE 11 (68)
T ss_pred HHHHHH
Confidence 333333
No 332
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=64.25 E-value=71 Score=36.71 Aligned_cols=62 Identities=18% Similarity=0.344 Sum_probs=55.9
Q ss_pred chHHHHHHHHhcCC--HHHHHHHHHHHHHHhhccccHHHHHHHHHHhhCCCChhHHHHHHHhhcc
Q 019459 275 DGKEFFRQARSRLS--YEQFSAFLASIKELNAQKQTREETLRKAEEIFGTDNKDLYLYFQGLLNR 337 (340)
Q Consensus 275 DGKEFFRQARsRLS--YEQFsaFLANIKELNAhkQTREETL~KA~eIFG~eNkDLY~~FegLL~R 337 (340)
|-+.|..+++-+++ .|-|+.||.-+|+|-.|.-.-.+.+..+-.||-. .++|.+-|--.|=.
T Consensus 130 DAlsyLe~vK~~f~~rp~iYn~FLdiMkdFKsqaiDtpgVI~RVS~LFrg-YP~LIegFNtFLPs 193 (1163)
T COG5602 130 DALSYLEKVKEQFSNRPEIYNNFLDIMKDFKSQAIDTPGVIERVSVLFRG-YPHLIEGFNTFLPS 193 (1163)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHcC-ChHHHHHHhhhCCC
Confidence 89999999999988 4789999999999999999999999999999953 68999999877643
No 333
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=64.24 E-value=79 Score=30.54 Aligned_cols=62 Identities=21% Similarity=0.249 Sum_probs=33.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019459 50 LETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLS 114 (340)
Q Consensus 50 LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~ 114 (340)
+|.-+-.+-+.|.+++..+.+.+.|...++.++........ +....|..+..++-..++.|.
T Consensus 188 ~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~---~~~~~le~~~~~~ee~~~~L~ 249 (297)
T PF02841_consen 188 MENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQK---EQEQMLEQQERSYEEHIKQLK 249 (297)
T ss_dssp HHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 44445555667777777777777777777666655554432 233334445555555555444
No 334
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=64.17 E-value=67 Score=37.20 Aligned_cols=71 Identities=21% Similarity=0.218 Sum_probs=41.8
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLS 114 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~ 114 (340)
.-+...|..|+..|+..+.+|+++|.+|..-+......+.+..+.....-.+...|+..|..|.--=++|.
T Consensus 410 ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~ 480 (1200)
T KOG0964|consen 410 KEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLR 480 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888888888888777666655554444444444433333334444443333333333
No 335
>PRK04406 hypothetical protein; Provisional
Probab=64.14 E-value=45 Score=26.67 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccC
Q 019459 68 ICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSLNDDN 135 (340)
Q Consensus 68 i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~ 135 (340)
+..+++|+..||. |+.. +..--+.|..+|-+.++++++|+.==+.|.+.|.+-.
T Consensus 6 ~~~le~Ri~~LE~-------~lAf-------QE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 6 IEQLEERINDLEC-------QLAF-------QEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHH-------HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4467778777776 4444 2223355677788888888888777777777665543
No 336
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=64.11 E-value=1e+02 Score=32.07 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 54 TGTMRQMLYEKDRLICELEERLSHVQK 80 (340)
Q Consensus 54 ~~~LR~~laEKd~~i~~Lq~r~~~le~ 80 (340)
+..|+++|.+-.+.++.++.++..++.
T Consensus 73 ~~~l~~~l~~l~~~~~~~~~~~~~~~~ 99 (525)
T TIGR02231 73 LAELRKQIRELEAELRDLEDRGDALKA 99 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333333
No 337
>PRK04325 hypothetical protein; Provisional
Probab=64.05 E-value=53 Score=26.11 Aligned_cols=53 Identities=26% Similarity=0.352 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccC
Q 019459 69 CELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSLNDDN 135 (340)
Q Consensus 69 ~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~ 135 (340)
..+++|+..||. |+.. +..--+.|...|-+.++++++|+.=-+.|...|.+-.
T Consensus 5 ~~~e~Ri~~LE~-------klAf-------QE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 5 QEMEDRITELEI-------QLAF-------QEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred hhHHHHHHHHHH-------HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346677776665 4444 2233355677788888888888877777777775544
No 338
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=63.88 E-value=1.4e+02 Score=28.58 Aligned_cols=102 Identities=21% Similarity=0.252 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHH
Q 019459 32 LDLARKITSMAIASRVSKLETETGTMRQMLYEK-------DRLICELEERLSHVQKVYQEADSKLK-------IFIDDNA 97 (340)
Q Consensus 32 LdlArkIts~A~atRVs~LE~E~~~LR~~laEK-------d~~i~~Lq~r~~~le~~L~e~~~rl~-------~a~de~~ 97 (340)
=+.++|+..+ |..++|..+..+..+|.|- |+...+--.++.=.+..|-.+..|.. ...+|-.
T Consensus 44 ~er~~Kv~en----r~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~ 119 (205)
T KOG1003|consen 44 SERGMKVIEN----RAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLR 119 (205)
T ss_pred HHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777654 4556666666665555554 44444444455555555555555544 4445555
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCC
Q 019459 98 KLAKERDSLAMTARNLSRDLAKLETFKRQLMQSLNDDNSS 137 (340)
Q Consensus 98 kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~~~ 137 (340)
.+.....+|..-.-++..++.+.|.-=|.|+--|.+-+-.
T Consensus 120 ~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~r 159 (205)
T KOG1003|consen 120 ILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETR 159 (205)
T ss_pred HhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhh
Confidence 5666667777777777778888888888888877765543
No 339
>PF11418 Scaffolding_pro: Phi29 scaffolding protein; InterPro: IPR024374 This protein is also referred to as Gp7. The protein contains a DNA-binding function and may have a role in mediating the structural transition from prohead to mature virus and also scaffold release [].Gp7 is arranged within the capsid as a series of concentric shells [].; PDB: 1NOH_C 1NO4_C 3MTU_E 3OA7_A.
Probab=63.76 E-value=57 Score=27.57 Aligned_cols=49 Identities=22% Similarity=0.392 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019459 62 YEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDL 117 (340)
Q Consensus 62 aEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDv 117 (340)
.||.+++..||.-|.+.-.++.+.+.-+ +||.+||+-|+..-.||-|.+
T Consensus 22 sErTeaLqqlr~~~~sf~sEy~dlT~~~-------eKl~aek~DL~vsNskLFrQ~ 70 (97)
T PF11418_consen 22 SERTEALQQLRESYTSFHSEYEDLTEAL-------EKLTAEKEDLIVSNSKLFRQH 70 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhhhhhhHHHHHHh
Confidence 5788999999999999999999988887 668888888887777776554
No 340
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=63.69 E-value=69 Score=33.94 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=15.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 019459 84 EADSKLKIFIDDNAKLAKERDSLAMTARNLSRD 116 (340)
Q Consensus 84 e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RD 116 (340)
+...++....++...+.++...+...+..|..+
T Consensus 380 el~e~leel~e~leeie~eq~ei~e~l~~Lrk~ 412 (569)
T PRK04778 380 ELQEELEEILKQLEEIEKEQEKLSEMLQGLRKD 412 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444555555555444444
No 341
>PHA00489 scaffolding protein
Probab=63.69 E-value=28 Score=29.54 Aligned_cols=49 Identities=27% Similarity=0.431 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019459 62 YEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDL 117 (340)
Q Consensus 62 aEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDv 117 (340)
.||.+++..||+-|.+.-.++.|.+..+ +||.+||+-|+..-.||-|.|
T Consensus 23 sErTeaLqqlr~~ygSf~sEy~elT~a~-------eKl~aek~DLivsNskLFrql 71 (101)
T PHA00489 23 SERTEALQQLRESYGSFHSEYEELTEAL-------EKLTAEKEDLIVSNSKLFRQL 71 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhhhhhhHHHHHHc
Confidence 5788899999999999999999988887 568888888887777776554
No 342
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=63.67 E-value=2.3 Score=42.71 Aligned_cols=56 Identities=16% Similarity=0.134 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019459 76 SHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSL 131 (340)
Q Consensus 76 ~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 131 (340)
..++..+.+....+.........|+..-+.|.-.|-.|.+||+-+.-==.-|=+.+
T Consensus 94 ~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV 149 (326)
T PF04582_consen 94 SSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRV 149 (326)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHH
Confidence 33333333333444444455567778888888888888888876554333333333
No 343
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=63.61 E-value=92 Score=26.40 Aligned_cols=72 Identities=19% Similarity=0.286 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHH
Q 019459 55 GTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSR--------DLAKLETFKRQ 126 (340)
Q Consensus 55 ~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~R--------DvaKLE~FKk~ 126 (340)
..||..+..-...+..|. ..||.+-.-+..--+.|.....+|++||.++-.-.+-..| |-.-|+.++-.
T Consensus 2 ~~Lr~~v~~er~~~~~L~---~ELEeER~AaAsAA~EAMaMI~RLQ~EKAa~~mEA~Qy~Rm~EEk~~yD~e~ie~L~~~ 78 (94)
T PF04576_consen 2 ERLRRAVEAERKALAALY---AELEEERSAAASAASEAMAMILRLQEEKAAVEMEARQYQRMAEEKAEYDQEAIESLKDI 78 (94)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456666666555555553 3445555555566667777778899999999877765544 55566766666
Q ss_pred HHh
Q 019459 127 LMQ 129 (340)
Q Consensus 127 Lmq 129 (340)
|++
T Consensus 79 l~~ 81 (94)
T PF04576_consen 79 LYK 81 (94)
T ss_pred HHH
Confidence 654
No 344
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=63.49 E-value=1.1e+02 Score=30.55 Aligned_cols=75 Identities=21% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------------------------
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDN-------------------------- 96 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~-------------------------- 96 (340)
++-++--||-.+..|+..+-||-+.+.-+..-...|..++.+..+.|.+-.+-.
T Consensus 117 Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~~~ngd~~~~~~~~~~~ 196 (302)
T PF09738_consen 117 LKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVPDATNGDTSDEPNNVGHP 196 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCCCCCCccccCccccCCC
Q ss_pred -------------------------HHHHHHHHHHHHHHHHHhhhH
Q 019459 97 -------------------------AKLAKERDSLAMTARNLSRDL 117 (340)
Q Consensus 97 -------------------------~kL~~E~~sLa~TvKKL~RDv 117 (340)
.||..||..|..+|+||.-+|
T Consensus 197 ~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~klk~qL 242 (302)
T PF09738_consen 197 KRALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRKLKLQL 242 (302)
T ss_pred cccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
No 345
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=63.44 E-value=24 Score=35.58 Aligned_cols=50 Identities=20% Similarity=0.407 Sum_probs=31.0
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
.+.+||..+|..++.|-..+.+-...+.++++++..++..|.|...|.++
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRR 190 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRR 190 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 45666666666666666666666666666666666666666666665544
No 346
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=63.41 E-value=1.2e+02 Score=27.81 Aligned_cols=88 Identities=15% Similarity=0.230 Sum_probs=0.0
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHH--HHHH
Q 019459 47 VSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKL--ETFK 124 (340)
Q Consensus 47 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKL--E~FK 124 (340)
+..-..|+..+...|..|...+..-.+++...+..|.+-...|..-.+...++.++-+.|.....+---.++.| |--|
T Consensus 73 ~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~iAglT~eEAk 152 (201)
T PF12072_consen 73 LKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQQELEEIAGLTAEEAK 152 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q ss_pred HHHHhhcccc
Q 019459 125 RQLMQSLNDD 134 (340)
Q Consensus 125 k~LmqSLqeD 134 (340)
..||..|.+|
T Consensus 153 ~~Ll~~le~e 162 (201)
T PF12072_consen 153 EILLEKLEEE 162 (201)
T ss_pred HHHHHHHHHH
No 347
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=63.37 E-value=1.6e+02 Score=29.17 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=21.9
Q ss_pred HHHHhhhHHHHHHHHHHHHhhcccc
Q 019459 110 ARNLSRDLAKLETFKRQLMQSLNDD 134 (340)
Q Consensus 110 vKKL~RDvaKLE~FKk~LmqSLqeD 134 (340)
++.|.+-+.|++.||+.||..|.+=
T Consensus 156 ~~el~~K~~~~k~~~e~Ll~~LgeF 180 (268)
T PF11802_consen 156 FQELKTKIEKIKEYKEKLLSFLGEF 180 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888999999999999999664
No 348
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=63.35 E-value=2.4 Score=45.76 Aligned_cols=91 Identities=23% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHhh------
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKL---KIFIDDNAKLAKERDSLAMTARNLSR------ 115 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl---~~a~de~~kL~~E~~sLa~TvKKL~R------ 115 (340)
.+...|-+++.+||+.+.+++....+++.++..++..+.+...+. ...-++...|..|-|.|-..+.|+.|
T Consensus 239 ~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve 318 (713)
T PF05622_consen 239 VELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVE 318 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 445567777888888888888888888888888877765544443 33334556666666666444433333
Q ss_pred ----hHHHHHHHHHHHHhhccccCC
Q 019459 116 ----DLAKLETFKRQLMQSLNDDNS 136 (340)
Q Consensus 116 ----DvaKLE~FKk~LmqSLqeD~~ 136 (340)
-|.-++-||+.+ +.|.+++.
T Consensus 319 ~YKkKLed~~~lk~qv-k~Lee~N~ 342 (713)
T PF05622_consen 319 KYKKKLEDLEDLKRQV-KELEEDNA 342 (713)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 333344455554 77777764
No 349
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=63.22 E-value=1.1e+02 Score=27.02 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=32.6
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019459 41 MAIASRVSKLETETGTMRQMLYEKDR----LICELEERLSHVQKVYQEADSKLKIFI 93 (340)
Q Consensus 41 ~A~atRVs~LE~E~~~LR~~laEKd~----~i~~Lq~r~~~le~~L~e~~~rl~~a~ 93 (340)
-.|.+++..||+|...|-++=.++.+ ....++.++..+-........++..+.
T Consensus 23 ~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~ 79 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLK 79 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45788899999999998776555443 333444455555555555555554443
No 350
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=63.14 E-value=32 Score=31.64 Aligned_cols=42 Identities=24% Similarity=0.223 Sum_probs=35.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 49 KLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLK 90 (340)
Q Consensus 49 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~ 90 (340)
=-|.|-..||..|++-+++|.-|+.=+..-|+.+.|...+|-
T Consensus 26 LsEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLG 67 (162)
T PF04201_consen 26 LSEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLG 67 (162)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHC
Confidence 347888999999999999999999888888888888777763
No 351
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=63.12 E-value=1.5e+02 Score=28.62 Aligned_cols=94 Identities=16% Similarity=0.223 Sum_probs=48.8
Q ss_pred CCCCchhHHhcCCCCc--hhh-------hHHHHHHHHHHHHHHhhh----hH---hHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 13 DFHLPDEVLAVIPTDP--YDQ-------LDLARKITSMAIASRVSK----LE---TETGTMRQMLYEKDRLICELEERLS 76 (340)
Q Consensus 13 ~f~Lp~eilsvLP~DP--yEQ-------LdlArkIts~A~atRVs~----LE---~E~~~LR~~laEKd~~i~~Lq~r~~ 76 (340)
+|++-+-+|.-||.+. .++ |.-.-.+++.-++..|++ .- .++..|+.+|.+=-..+..+++++.
T Consensus 12 ~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~ 91 (291)
T PF10475_consen 12 DFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLK 91 (291)
T ss_pred CCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8998888888899883 323 223333333333333322 11 1244455555555555555666655
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019459 77 HVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNL 113 (340)
Q Consensus 77 ~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL 113 (340)
.++..+....-++.+ +.+.|.+|.....+|
T Consensus 92 ~~~~~~~~~~L~Il~-------~~rkr~~l~~ll~~L 121 (291)
T PF10475_consen 92 SADENLTKSGLEILR-------LQRKRQNLKKLLEKL 121 (291)
T ss_pred HHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 555555554444433 555555554444443
No 352
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=63.10 E-value=66 Score=28.98 Aligned_cols=26 Identities=12% Similarity=0.202 Sum_probs=16.0
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRL 67 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~ 67 (340)
.+..++-++|.+...++.+.......
T Consensus 122 ~li~~l~~~~~~~~~~~kq~~~~~~~ 147 (192)
T PF05529_consen 122 SLIKELIKLEEKLEALKKQAESASEA 147 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 55666677777766666665544433
No 353
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=63.07 E-value=1.4e+02 Score=28.32 Aligned_cols=84 Identities=20% Similarity=0.323 Sum_probs=39.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHH-------HHHHHHHHHHHHHHHHHhhhHH
Q 019459 49 KLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIF---IDDN-------AKLAKERDSLAMTARNLSRDLA 118 (340)
Q Consensus 49 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a---~de~-------~kL~~E~~sLa~TvKKL~RDva 118 (340)
+|..|..+|...+.--++..+.|.+.+..|...+..+..-+..| .+|. ..|.++++.|.+..|-|.|.-.
T Consensus 19 ~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q 98 (193)
T PF14662_consen 19 KLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQ 98 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555545444444444444433333322 2332 2344555555555555555544
Q ss_pred HHHHHHHHHHhhccccCC
Q 019459 119 KLETFKRQLMQSLNDDNS 136 (340)
Q Consensus 119 KLE~FKk~LmqSLqeD~~ 136 (340)
.|.+ =|+.||+++.
T Consensus 99 ~L~~----~i~~Lqeen~ 112 (193)
T PF14662_consen 99 SLVA----EIETLQEENG 112 (193)
T ss_pred HHHH----HHHHHHHHHh
Confidence 4432 2445555544
No 354
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=63.05 E-value=1.1e+02 Score=31.05 Aligned_cols=71 Identities=18% Similarity=0.345 Sum_probs=34.7
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHH----HH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAK----LE 121 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaK----LE 121 (340)
-+.+|-.|+.+-..++.-|+..|.. ++..+=.+|..+.++|.. .+++-+.+...|..+.+.|++ ||
T Consensus 242 ~L~kl~~~i~~~lekI~sREk~iN~---qle~l~~eYr~~~~~ls~-------~~~~y~~~s~~V~~~t~~L~~IseeLe 311 (359)
T PF10498_consen 242 QLDKLQQDISKTLEKIESREKYINN---QLEPLIQEYRSAQDELSE-------VQEKYKQASEGVSERTRELAEISEELE 311 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544432 334444444444444444 555555555555555555543 45
Q ss_pred HHHHH
Q 019459 122 TFKRQ 126 (340)
Q Consensus 122 ~FKk~ 126 (340)
..|..
T Consensus 312 ~vK~e 316 (359)
T PF10498_consen 312 QVKQE 316 (359)
T ss_pred HHHHH
Confidence 44443
No 355
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=62.96 E-value=68 Score=31.73 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=47.8
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAK 101 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~ 101 (340)
|..||+-|=.|++.+=...+.+-+....--+.|-..|..|+....+-....++..||..
T Consensus 101 IsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~ 159 (271)
T PF13805_consen 101 ISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKLKY 159 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHh
Confidence 34688888888888888888888888888888888888888888888887777777653
No 356
>PF14282 FlxA: FlxA-like protein
Probab=62.58 E-value=44 Score=28.00 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019459 65 DRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSL 131 (340)
Q Consensus 65 d~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 131 (340)
+..|+.|++++..|+..|.+..+--....++ -.+-...|-..+.-|...|+.|..=+..-.+.-
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~---k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~~ 81 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQ---KQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQK 81 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5667777777777777666555431111111 134455666677777777777766555554433
No 357
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=62.52 E-value=1.2e+02 Score=27.57 Aligned_cols=96 Identities=19% Similarity=0.238 Sum_probs=43.8
Q ss_pred chhHHhcCCCCchhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-HHHHHHHHH
Q 019459 17 PDEVLAVIPTDPYDQLDLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHV----QKVY-QEADSKLKI 91 (340)
Q Consensus 17 p~eilsvLP~DPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~l----e~~L-~e~~~rl~~ 91 (340)
|..+|--.=-|--++|.=+++-+..+++.+ ..|..++.+-.+.+.++++++..+ +..| .++-.+...
T Consensus 24 P~~~l~q~ird~e~~l~~a~~~~a~~~a~~--------~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~ 95 (221)
T PF04012_consen 24 PEKMLEQAIRDMEEQLRKARQALARVMANQ--------KRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKAD 95 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444455566666665555544433 334444444444444444444332 1112 233334444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019459 92 FIDDNAKLAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 92 a~de~~kL~~E~~sLa~TvKKL~RDvaKL 120 (340)
..+.-..|...-+.+..+|.+|..++.+|
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l 124 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEEL 124 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555554444444433
No 358
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=62.49 E-value=12 Score=35.45 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=17.0
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEER 74 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r 74 (340)
.|+.-||.-+..|=.+|+|||..|.-||.|
T Consensus 136 ~K~qemE~RIK~LhaqI~EKDAmIkVLQqr 165 (205)
T PF12240_consen 136 RKCQEMENRIKALHAQIAEKDAMIKVLQQR 165 (205)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555555555555555555555554
No 359
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=62.09 E-value=58 Score=33.31 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=12.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019459 105 SLAMTARNLSRDLAKLETFKRQLMQSLND 133 (340)
Q Consensus 105 sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 133 (340)
.|..+.++|.+.+.+|+.=.+.|...|..
T Consensus 379 ~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 379 KLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444433
No 360
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=61.82 E-value=1e+02 Score=26.46 Aligned_cols=91 Identities=19% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHH--HHHh
Q 019459 39 TSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLK--IFIDDNAKLAKERDSLAMTA--RNLS 114 (340)
Q Consensus 39 ts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~--~a~de~~kL~~E~~sLa~Tv--KKL~ 114 (340)
....+|.+.-.+|.++..+|.++.++-..+..|+.++..++..+.+...+.. .+..--.....|-+.-+..+ +-|.
T Consensus 42 ~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~~~e~eeeSe~lae~fl~ 121 (150)
T PF07200_consen 42 ENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARLQAAASEAEEESEELAEEFLD 121 (150)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC-S-SS
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q ss_pred hhHHHHHHHHHHHHhh
Q 019459 115 RDLAKLETFKRQLMQS 130 (340)
Q Consensus 115 RDvaKLE~FKk~LmqS 130 (340)
.++. ++.|-++-|..
T Consensus 122 g~~d-~~~Fl~~f~~~ 136 (150)
T PF07200_consen 122 GEID-VDDFLKQFKEK 136 (150)
T ss_dssp SHHH-HHHHHHHHHHH
T ss_pred CCCC-HHHHHHHHHHH
No 361
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=61.72 E-value=63 Score=27.69 Aligned_cols=46 Identities=17% Similarity=0.284 Sum_probs=27.9
Q ss_pred hHHHHHHHHH-HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 32 LDLARKITSM-AIASRVSKLETETGTMRQMLYEKDRLICELEERLSH 77 (340)
Q Consensus 32 LdlArkIts~-A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~ 77 (340)
.|+-+=|..+ ++..-...|+.+...++.++..+...+..+++++..
T Consensus 22 Vd~~~v~~~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~ 68 (158)
T PF03938_consen 22 VDVDKVFQESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQS 68 (158)
T ss_dssp E-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eeHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554 445555677777777777777776666666655543
No 362
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=61.68 E-value=28 Score=35.44 Aligned_cols=92 Identities=25% Similarity=0.268 Sum_probs=63.1
Q ss_pred CchhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh-------
Q 019459 27 DPYDQLDLARKITSMAIASRVSKLETETGTMRQMLYEKDR-------LICELEERLSHVQKVYQEADSKLKIF------- 92 (340)
Q Consensus 27 DPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~-------~i~~Lq~r~~~le~~L~e~~~rl~~a------- 92 (340)
||-+|-+|+ ++=|++||.|.-.+-.+|+.-.. .|-.|..|+++|+.+|..-.+++..-
T Consensus 213 dp~~qaevq--------~~Lvs~Le~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~qe~q~isag~~~~sl~ 284 (372)
T COG3524 213 DPKAQAEVQ--------MSLVSKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQEKQAISAGGSSQSLS 284 (372)
T ss_pred ChhhhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCccchh
Confidence 788888887 56689999999999888876554 35789999999999998877776431
Q ss_pred --HHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHHH
Q 019459 93 --IDDNAKLAKER----DSLAMTARNLSRDLAKLETFKRQLM 128 (340)
Q Consensus 93 --~de~~kL~~E~----~sLa~TvKKL~RDvaKLE~FKk~Lm 128 (340)
..|-..|.-|| ..|++.++.|. -||.|+-++++-
T Consensus 285 ~qaAefq~l~lE~~fAekay~AAl~SlE--sArieAdrqq~y 324 (372)
T COG3524 285 NQAAEFQRLYLENTFAEKAYAAALTSLE--SARIEADRQQLY 324 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhhhhe
Confidence 12223343343 24455555553 366677666653
No 363
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=61.57 E-value=1.1e+02 Score=33.18 Aligned_cols=88 Identities=22% Similarity=0.274 Sum_probs=53.8
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh-----HHHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRD-----LAKL 120 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RD-----vaKL 120 (340)
++..|+.|+.++-+ +-+....+++....+++..+++..+|+.+.+.+.+.+++...+|...+..|.|+ |+.-
T Consensus 347 ~~~~~~~~l~~~~~---~~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~laEa 423 (656)
T PRK06975 347 KVDRLDQELVQRQQ---ANDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWMIAEV 423 (656)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHH
Confidence 56666666554333 344445555556666667777777777777777777777777777777666554 4455
Q ss_pred HHHHHHHHhhccccCC
Q 019459 121 ETFKRQLMQSLNDDNS 136 (340)
Q Consensus 121 E~FKk~LmqSLqeD~~ 136 (340)
|-+=+.=.|.|+-+.+
T Consensus 424 e~Ll~lA~q~L~l~~d 439 (656)
T PRK06975 424 EQMLSSASQQLQLTGN 439 (656)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 5555555555555544
No 364
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=61.29 E-value=1.2e+02 Score=37.75 Aligned_cols=101 Identities=21% Similarity=0.336 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019459 34 LARKITSMAIASRVSKLETETGTMRQMLYEKDRLIC-------------ELEERLSHVQKVYQEADSKLKIFIDDNAKLA 100 (340)
Q Consensus 34 lArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~-------------~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~ 100 (340)
+..|-.++.-+.||...--|+..-|..+.||...+. .||.|+..+|+.|.-..+|+...+.+-.++.
T Consensus 939 ~~qk~~~L~~a~~V~~f~~eC~et~~wi~dK~~~~e~t~~~~~Dl~gv~alqrrL~~lErdl~aie~kv~~L~~ea~~v~ 1018 (2473)
T KOG0517|consen 939 VDQKKVALESALRVETFHLECEETRVWIRDKTRVLESTDRLGNDLAGVMALQRRLQGLERDLAAIEAKVAALEKEANKVE 1018 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccCcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 456777888899999999999999999999988776 7899999999999999999988444444443
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCC
Q 019459 101 KERDSLAMTARNLSRDLAKLETFKRQLMQSLNDDNSS 137 (340)
Q Consensus 101 ~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~~~ 137 (340)
++-= .....++..++.|+..=..|-+.+++-...
T Consensus 1019 ~~~P---aea~~i~~r~~el~~~w~~l~~~~~~~~~~ 1052 (2473)
T KOG0517|consen 1019 EEHP---AEAQAINARIAELQALWEQLQQRLQEREER 1052 (2473)
T ss_pred hcCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 356678888899998888888888877665
No 365
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=61.15 E-value=26 Score=32.95 Aligned_cols=37 Identities=16% Similarity=0.311 Sum_probs=22.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 48 SKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQE 84 (340)
Q Consensus 48 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e 84 (340)
.++|++.-.|.+.+..++..+++||++.+.++..+..
T Consensus 139 D~~eA~~t~lk~~~~~~~~~le~Lqkn~~~~~k~~d~ 175 (192)
T COG5374 139 DKMEADSTDLKARLRKAQILLEGLQKNQEELFKLLDK 175 (192)
T ss_pred hhhhcchHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666554433
No 366
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=60.99 E-value=1.5e+02 Score=29.87 Aligned_cols=83 Identities=23% Similarity=0.304 Sum_probs=55.8
Q ss_pred HHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHhhhHH
Q 019459 40 SMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDS-LAMTARNLSRDLA 118 (340)
Q Consensus 40 s~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~s-La~TvKKL~RDva 118 (340)
..++--|++.|++|---||++|.+--....--++-|..++..+++.-.+|..--+.+.-|.+||+- |++-..-|.--+-
T Consensus 216 qes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~ 295 (305)
T PF14915_consen 216 QESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLY 295 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 356678999999999999999987655544445567777777777777766555555555555543 6665555555555
Q ss_pred HHHH
Q 019459 119 KLET 122 (340)
Q Consensus 119 KLE~ 122 (340)
+.|.
T Consensus 296 qyEk 299 (305)
T PF14915_consen 296 QYEK 299 (305)
T ss_pred HHHH
Confidence 5543
No 367
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=60.68 E-value=2.1e+02 Score=29.66 Aligned_cols=28 Identities=18% Similarity=0.109 Sum_probs=18.2
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHH
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELE 72 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq 72 (340)
-++..+-+++..+|.+..+....+..|+
T Consensus 80 ~~~q~~~~q~~~~~~~~~~v~~ek~rl~ 107 (377)
T KOG2896|consen 80 HVEQCLSAQVQSMRVEMKEVSEEKLRLQ 107 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667777777777776666666
No 368
>PRK11415 hypothetical protein; Provisional
Probab=60.54 E-value=34 Score=27.17 Aligned_cols=61 Identities=7% Similarity=0.071 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHhh
Q 019459 55 GTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLK-IFIDDNAKLAKERDSLAMTARNLSR 115 (340)
Q Consensus 55 ~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~-~a~de~~kL~~E~~sLa~TvKKL~R 115 (340)
+.+=.+|...|.+.+.|.+++..||.++......-. ...++-..|-++|=.|-..+-++-+
T Consensus 6 ~d~I~~Lk~~D~~F~~L~~~h~~Ld~~I~~lE~~~~~~~d~~i~~LKk~KL~LKDeI~~~L~ 67 (74)
T PRK11415 6 RDLISRLKNENPRFMSLFDKHNKLDHEIARKEGSDGRGYNAEVVRMKKQKLQLKDEMLKILQ 67 (74)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344467888999999999999999999988887654 2456667788887777665555443
No 369
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=60.39 E-value=1.5e+02 Score=32.55 Aligned_cols=72 Identities=10% Similarity=0.159 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019459 56 TMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQL 127 (340)
Q Consensus 56 ~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~L 127 (340)
.|-+++.+=...|..|+..+..++.++...+..+.++.++...+....--|.+.-.+-.++-..|-..-+.|
T Consensus 83 ~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl 154 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRL 154 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666666666666666666667777776666666666666555544444444443333333
No 370
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=60.39 E-value=91 Score=25.31 Aligned_cols=59 Identities=14% Similarity=0.197 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHhhhHHHH
Q 019459 62 YEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKL---AKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 62 aEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL---~~E~~sLa~TvKKL~RDvaKL 120 (340)
.|-+....+|+.-+..++..|.|...-+..++....|- ..|-..=-.-|..+.+.|..+
T Consensus 35 ~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~~~~i~~~ 96 (97)
T PF09177_consen 35 EELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRRQFVSAIRNQIKQM 96 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 35567788888888888888888888888877776552 334444444455555555444
No 371
>PRK00846 hypothetical protein; Provisional
Probab=60.15 E-value=65 Score=26.22 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 66 RLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 66 ~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
.-|.+|+.|++-.|..+.+.|.-+..
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~ 38 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALAD 38 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666555555544
No 372
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=59.99 E-value=29 Score=30.36 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=0.0
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLK 90 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~ 90 (340)
+..|+..||.|..++ +.+..+|..||.-||.+|.+-.++..
T Consensus 30 mkarIa~LEGE~r~~-------e~l~~dL~rrIkMLE~aLkqER~k~~ 70 (134)
T PF08232_consen 30 MKARIAFLEGERRGQ-------ENLKKDLKRRIKMLEYALKQERAKYK 70 (134)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhh
No 373
>PF05859 Mis12: Mis12 protein; InterPro: IPR008685 Kinetochores are the chromosomal sites for spindle interaction and play a vital role for chromosome segregation. Fission Saccharomyces cerevisiae kinetochore protein Mis12, is required for correct spindle morphogenesis, determining metaphase spindle length []. Thirty-five to sixty percent extension of metaphase spindle length takes place in Mis12 mutants []. It has been shown that Mis12 might genetically interact with Mal2p [].; GO: 0007049 cell cycle, 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=59.91 E-value=7.9 Score=33.83 Aligned_cols=56 Identities=27% Similarity=0.383 Sum_probs=40.9
Q ss_pred CCCCchhHH--hcCCCCchhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 019459 13 DFHLPDEVL--AVIPTDPYDQLDLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEE 73 (340)
Q Consensus 13 ~f~Lp~eil--svLP~DPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~ 73 (340)
=|.+|.++| .|+.-.+|+=+++.. .-...-..|+.|+..||.+|.+.-.+-+.|++
T Consensus 86 if~IP~~llp~~~~~l~~~~~~~~~~-----~~~~~~~~ld~el~~lr~kL~~~~~~~~~L~~ 143 (144)
T PF05859_consen 86 IFSIPEDLLPEDWIRLYHHEGLDFSS-----NQLEEDYELDAELEQLRRKLEEQRKLNAELEQ 143 (144)
T ss_pred cccCChhhcchhhhcccccccccccc-----ccccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 478896665 366677777777765 44455678889999999999888777777653
No 374
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=59.89 E-value=38 Score=28.09 Aligned_cols=54 Identities=26% Similarity=0.332 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019459 67 LICELEERLSHVQKVYQEADSKLKIF---IDDNAKLAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 67 ~i~~Lq~r~~~le~~L~e~~~rl~~a---~de~~kL~~E~~sLa~TvKKL~RDvaKL 120 (340)
.|..|++++++.-..|...+.||... -++-..|.+|...|...+++....|.+|
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~L 62 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLL 62 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 45556666666666666666666543 3455667777777777777766666655
No 375
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=59.64 E-value=1.1e+02 Score=32.53 Aligned_cols=14 Identities=21% Similarity=0.470 Sum_probs=8.4
Q ss_pred HHHHHHHHhhcccc
Q 019459 121 ETFKRQLMQSLNDD 134 (340)
Q Consensus 121 E~FKk~LmqSLqeD 134 (340)
|..|..||..+.++
T Consensus 147 ~eak~~l~~~~~~~ 160 (514)
T TIGR03319 147 EEAKEILLEEVEEE 160 (514)
T ss_pred HHHHHHHHHHHHHH
Confidence 34566777666554
No 376
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=59.63 E-value=26 Score=28.81 Aligned_cols=13 Identities=31% Similarity=0.672 Sum_probs=5.2
Q ss_pred cCCHHHHHHHHHH
Q 019459 286 RLSYEQFSAFLAS 298 (340)
Q Consensus 286 RLSYEQFsaFLAN 298 (340)
+||.+|+.+||.-
T Consensus 47 ~mtp~eL~~~L~~ 59 (83)
T PF14193_consen 47 KMTPEELAAFLRA 59 (83)
T ss_pred CCCHHHHHHHHHH
Confidence 3344444444433
No 377
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=59.43 E-value=66 Score=37.31 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019459 68 ICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSL 106 (340)
Q Consensus 68 i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sL 106 (340)
+..|++|+.++...++++...-+.+..|++||++|.+.+
T Consensus 417 ~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~ 455 (1195)
T KOG4643|consen 417 HEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTV 455 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777777777777766544
No 378
>PRK10869 recombination and repair protein; Provisional
Probab=59.31 E-value=52 Score=34.88 Aligned_cols=57 Identities=12% Similarity=-0.004 Sum_probs=30.6
Q ss_pred CCchhhhHHHHHHHH-HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 26 TDPYDQLDLARKITS-MAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVY 82 (340)
Q Consensus 26 ~DPyEQLdlArkIts-~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L 82 (340)
-||..||++=-.+.. -.+...+..+-.+...++.+|.+......+.++++.-|+.++
T Consensus 137 l~~~~~~~lLD~~~~~~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql 194 (553)
T PRK10869 137 LKPEHQKTLLDAYANETSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQL 194 (553)
T ss_pred cCHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 489999987776655 345555555555555555544444444444444444443333
No 379
>PRK09737 EcoKI restriction-modification system protein HsdS; Provisional
Probab=59.16 E-value=21 Score=35.12 Aligned_cols=39 Identities=15% Similarity=0.418 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHH---HHHHHH-HhhhHHHHHHHHHHHHhhc
Q 019459 93 IDDNAKLAKERDSL---AMTARN-LSRDLAKLETFKRQLMQSL 131 (340)
Q Consensus 93 ~de~~kL~~E~~sL---a~TvKK-L~RDvaKLE~FKk~LmqSL 131 (340)
++||.+..+.-+.| ...+.+ +++-+++|+.+|+.|||-+
T Consensus 372 l~EQ~kI~~~l~~l~~~~d~i~~~~~~~l~~L~~lKqslLqk~ 414 (461)
T PRK09737 372 LEEQAEIVRRVEQLFAYADTIEKQVNNALARVNNLTQSILAKA 414 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57787777655554 444544 5778999999999999976
No 380
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=59.03 E-value=48 Score=28.42 Aligned_cols=37 Identities=16% Similarity=0.311 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 55 GTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 55 ~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
..|+.+|.+|+..|.-++..+.+|..--+...-|...
T Consensus 29 ~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~ 65 (102)
T PF10205_consen 29 AELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEV 65 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544444444433
No 381
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=59.02 E-value=3e+02 Score=30.87 Aligned_cols=88 Identities=17% Similarity=0.171 Sum_probs=65.8
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHV---QKV-YQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDL 117 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~l---e~~-L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDv 117 (340)
+|-++...--.|++.||.+++||+..++-|++++..- |.. ..+-+.+|+.|+|+.+.-.++++..+.-.+.+-...
T Consensus 228 qye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~e~~~~rd~~lk~a~eslm~ane~kdr~ie~lr~~ln~y 307 (861)
T KOG1899|consen 228 QYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLMADGEHKSLRDNTLKNALESLMRANEQKDRFIESLRNYLNNY 307 (861)
T ss_pred HHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhhh
Confidence 4445555555679999999999999999999887642 221 233455999999999999999999888888887777
Q ss_pred HHHHHHHHHHHh
Q 019459 118 AKLETFKRQLMQ 129 (340)
Q Consensus 118 aKLE~FKk~Lmq 129 (340)
.|..-..+-+|.
T Consensus 308 ~k~~~iv~i~qg 319 (861)
T KOG1899|consen 308 DKNAQIVRILQG 319 (861)
T ss_pred hhhhhhhhhhcC
Confidence 776655555543
No 382
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=58.98 E-value=3.1 Score=44.84 Aligned_cols=52 Identities=25% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 71 LEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 71 Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
++.++..+..++.+...++.....+..+|..|+..|...++.|.++.++|..
T Consensus 361 ~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~ 412 (713)
T PF05622_consen 361 LKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQE 412 (713)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444555555555555555555555543
No 383
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.97 E-value=92 Score=31.29 Aligned_cols=64 Identities=23% Similarity=0.331 Sum_probs=31.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 49 KLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 49 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
+||++...|-.+..+-+..+..|++.+. +..+++..-. .+|..+-+.|.+|.--|.|++.|||.
T Consensus 119 k~e~~k~~Ld~~~~~~~~~~~~l~~~va-------~v~q~~~~qq---~Els~~L~~l~~~~~~~s~~~~k~es 182 (300)
T KOG2629|consen 119 KLEADKRQLDDQFDKAAKSLNALMDEVA-------QVSQLLATQQ---SELSRALASLKNTLVQLSRNIEKLES 182 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4555555554444444444444444433 4444433322 24555556666665566677766664
No 384
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=58.77 E-value=94 Score=27.23 Aligned_cols=80 Identities=16% Similarity=0.260 Sum_probs=43.7
Q ss_pred chhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019459 28 PYDQLDLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLA 107 (340)
Q Consensus 28 PyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa 107 (340)
|-++++=..+-.+-.|..+....|.-|..|=-- +.-..+-.+|+..|+.++.++...+..+++|..+|.
T Consensus 63 ~~~~~~~~~~elA~dIi~kakqIe~LIdsLPg~----~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll------- 131 (144)
T PF11221_consen 63 PPEEFEENIKELATDIIRKAKQIEYLIDSLPGI----EVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELL------- 131 (144)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTS----SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 445555555555555666666666555555331 111122336777777777788888877555554444
Q ss_pred HHHHHHhhhHH
Q 019459 108 MTARNLSRDLA 118 (340)
Q Consensus 108 ~TvKKL~RDva 118 (340)
..|..+-++|+
T Consensus 132 ~~v~~~i~~ia 142 (144)
T PF11221_consen 132 KQVQELIREIA 142 (144)
T ss_dssp HHHHHHHHTT-
T ss_pred HHHHHHHHHHh
Confidence 44555545443
No 385
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=58.71 E-value=20 Score=27.52 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 96 NAKLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 96 ~~kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
-+.-..+...|...+.+|+-+++|||.
T Consensus 26 aeq~L~~~~~i~~al~~Lk~EIaklE~ 52 (53)
T PF08898_consen 26 AEQQLAEAGDIAAALEKLKAEIAKLEA 52 (53)
T ss_pred HHHHHccchHHHHHHHHHHHHHHHHhc
Confidence 344556788899999999999999984
No 386
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=58.61 E-value=27 Score=32.99 Aligned_cols=54 Identities=22% Similarity=0.326 Sum_probs=46.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHhhccccCCC
Q 019459 83 QEADSKLKIFIDDNAKLAKERDSLAMTAR-NLSRDLAKLETFKRQLMQSLNDDNSS 137 (340)
Q Consensus 83 ~e~~~rl~~a~de~~kL~~E~~sLa~TvK-KL~RDvaKLE~FKk~LmqSLqeD~~~ 137 (340)
.+.-.||+.++.|+++|--+...|+.-|. +|+--|.-+..+| .++|-||+||..
T Consensus 19 eel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LK-e~NqkLqedNqE 73 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLK-EVNQKLQEDNQE 73 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 35566999999999999999999998886 8888888888886 579999999864
No 387
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=58.45 E-value=46 Score=32.28 Aligned_cols=95 Identities=20% Similarity=0.174 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 019459 37 KITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHV-QKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSR 115 (340)
Q Consensus 37 kIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~l-e~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~R 115 (340)
+........++..+-.....++.-...|+....+.++|-+.+ .........+......-..-|.+||+.|...|..|.+
T Consensus 164 ~~~~s~~~~~~~~~~~K~~~~~~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~ 243 (269)
T KOG3119|consen 164 KPKSSGAKLKPQSTARKKSKLSSPVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKK 243 (269)
T ss_pred CCCCcccccCCccchhhhccCCCchhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555545556666666777777777775532 2222222233333333335599999999999999999
Q ss_pred hHHHHHHHHHHHHhhc
Q 019459 116 DLAKLETFKRQLMQSL 131 (340)
Q Consensus 116 DvaKLE~FKk~LmqSL 131 (340)
.+++|-.++.+.++-.
T Consensus 244 el~~~~~~~~~~~~~~ 259 (269)
T KOG3119|consen 244 ELATLRRLFLQLPKPG 259 (269)
T ss_pred HHHHHHHHHHhhcccc
Confidence 9999988888877643
No 388
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=58.38 E-value=1.1e+02 Score=32.69 Aligned_cols=73 Identities=15% Similarity=0.192 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019459 35 ARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLS 114 (340)
Q Consensus 35 ArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~ 114 (340)
|-.||+-.--.+...+++++.+||..+..=.+.+.+|+.=+..+=.+++...+-+ |+.|.-.+.+|.
T Consensus 105 aaqitA~vAl~~a~~na~~I~~lk~si~~tN~AV~~l~~g~~~~~~av~~lQd~I-------------N~~i~Pain~l~ 171 (490)
T PF00523_consen 105 AAQITAAVALHQAQQNAANILRLKESIQSTNEAVQELTNGLSQLAVAVQALQDFI-------------NNEIIPAINQLS 171 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHTHHHHHHHHH
T ss_pred hhhhhhhhhhHhhHHhHHHHHHHhhhhhcccccceecchHHHHHHHHHHHHHHHH-------------HHHhhhhhhhcc
Confidence 5678888888899999999999999999999999999999998888887776666 456777777777
Q ss_pred hhHHHH
Q 019459 115 RDLAKL 120 (340)
Q Consensus 115 RDvaKL 120 (340)
.+++.+
T Consensus 172 C~v~~~ 177 (490)
T PF00523_consen 172 CEVADN 177 (490)
T ss_dssp HHHHHH
T ss_pred hhhHHH
Confidence 777653
No 389
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=58.25 E-value=46 Score=36.58 Aligned_cols=31 Identities=16% Similarity=0.364 Sum_probs=18.3
Q ss_pred HHHHHHHHhcCCHHHHHH-HH----HHHHHHhhccc
Q 019459 277 KEFFRQARSRLSYEQFSA-FL----ASIKELNAQKQ 307 (340)
Q Consensus 277 KEFFRQARsRLSYEQFsa-FL----ANIKELNAhkQ 307 (340)
.+|.-..|.-+.-++|=. || .=||+.=+|++
T Consensus 176 ~~~Lm~~kk~~rLD~lId~~le~la~LIk~i~~~~k 211 (654)
T PF09798_consen 176 VELLMRSKKNMRLDKLIDTLLENLADLIKEIILHEK 211 (654)
T ss_pred HHHHHhccccccHHHHHHHHHHHHHHHHHHHhhccc
Confidence 366666777777777743 22 33676444443
No 390
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=58.19 E-value=72 Score=25.40 Aligned_cols=65 Identities=20% Similarity=0.206 Sum_probs=34.5
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVY--------------QEADSKLKIFIDDNAKLAKERDSLAMTA 110 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L--------------~e~~~rl~~a~de~~kL~~E~~sLa~Tv 110 (340)
.+..|=.|+.+.=..+.|.|..+.++...+...=..+ ...-.++....++-..|.+||-.||.++
T Consensus 9 ~~~~LP~el~r~l~~irelD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~deKv~lA~~~ 87 (105)
T PF12998_consen 9 SLENLPAELQRNLTLIRELDAKSQDLLEELDQQIQKFIKNHGSPSLSPEKRRELLKEIQEEYERALELSDEKVALAQQA 87 (105)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555556666655555544443332222 2233344445555566777777777654
No 391
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=58.18 E-value=1e+02 Score=25.23 Aligned_cols=52 Identities=17% Similarity=0.177 Sum_probs=35.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019459 50 LETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAM 108 (340)
Q Consensus 50 LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~ 108 (340)
|=.+...|+.+|.+|++.|..|..-+.+|...|+ .-.+.+.||..+...+..
T Consensus 3 Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLi-------KYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLI-------KYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 3346678999999999999999998887776444 334445555555554443
No 392
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=58.09 E-value=96 Score=24.83 Aligned_cols=55 Identities=18% Similarity=0.232 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 67 LICELEERLSHVQKVYQE-ADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 67 ~i~~Lq~r~~~le~~L~e-~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
....|.=||--|+..|+. +......+..+|..|.-|..+|-..++.+.+-|.+++
T Consensus 15 ENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~ 70 (75)
T PF07989_consen 15 ENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAE 70 (75)
T ss_pred hhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666665653 4555666666777777777777666666666666554
No 393
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=57.70 E-value=2.4e+02 Score=29.87 Aligned_cols=71 Identities=24% Similarity=0.326 Sum_probs=45.1
Q ss_pred CCCCCchhHHhc---CCCC-----------chhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHH--HHHHHHHHHHHHH
Q 019459 12 PDFHLPDEVLAV---IPTD-----------PYDQLDLARKITSMAIASRVSKLETETGTMRQMLY--EKDRLICELEERL 75 (340)
Q Consensus 12 ~~f~Lp~eilsv---LP~D-----------PyEQLdlArkIts~A~atRVs~LE~E~~~LR~~la--EKd~~i~~Lq~r~ 75 (340)
.||-|.|-|.-| -||. =-+||+=-++...+|+..++..-+..+..|+..+. .-++.+..-+.++
T Consensus 236 tD~tL~DfVAD~RApTPTaAAE~~vP~~~el~~~l~~~~~rL~~~~~~~l~~~~~~l~~l~~~l~~~~p~~~l~~~~q~l 315 (440)
T COG1570 236 TDFTLADFVADLRAPTPTAAAELVVPDSAELLQQLDQLQRRLHRALRRLLDQKKQRLEHLARRLQFRSPERLLSEQQQRL 315 (440)
T ss_pred CCccHHHhhhhccCCCchHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 477777766543 3332 23466666777778888888887777777777776 5555555555555
Q ss_pred HHHHHHH
Q 019459 76 SHVQKVY 82 (340)
Q Consensus 76 ~~le~~L 82 (340)
..++..|
T Consensus 316 d~~~~rL 322 (440)
T COG1570 316 DELAIRL 322 (440)
T ss_pred HHHHHHH
Confidence 5444433
No 394
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=57.66 E-value=89 Score=24.35 Aligned_cols=55 Identities=24% Similarity=0.265 Sum_probs=0.0
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019459 48 SKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSL 106 (340)
Q Consensus 48 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sL 106 (340)
+.||+||+. ++.+.|.=.. .+.-.-.++..|+++..|-....++...|.+|-.-|
T Consensus 4 saL~~Eira-kQ~~~eEL~k---vk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 4 SALEAEIRA-KQAIQEELTK---VKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHH-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 395
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=57.54 E-value=1.6e+02 Score=27.19 Aligned_cols=83 Identities=13% Similarity=0.163 Sum_probs=51.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH------------hHHHHHHHHHHHHHHHHH
Q 019459 48 SKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEAD------SKLKI------------FIDDNAKLAKERDSLAMT 109 (340)
Q Consensus 48 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~------~rl~~------------a~de~~kL~~E~~sLa~T 109 (340)
.+|=.++.+|-..|.+-|..+..|.++...+...+.... +.|+- =-.++..|+.||..|-.+
T Consensus 6 ~~il~dak~L~~rL~~~d~~ad~Ll~qa~~l~~~i~sm~~y~eei~~l~~~~~~~~~~~l~~En~qi~~Lq~EN~eL~~~ 85 (181)
T PF05769_consen 6 EQILADAKRLVERLKDHDNAADSLLSQAEALNKQIESMRQYQEEIQELNELSKNRPRAGLQQENRQIRQLQQENRELRQS 85 (181)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHhhHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666555554221 22221 122347899999999999
Q ss_pred HHHHhhhHHH-HHHHHHHHHhh
Q 019459 110 ARNLSRDLAK-LETFKRQLMQS 130 (340)
Q Consensus 110 vKKL~RDvaK-LE~FKk~LmqS 130 (340)
++.-..=|.. +.-||++..+=
T Consensus 86 leEhq~alelIM~KyReq~~~l 107 (181)
T PF05769_consen 86 LEEHQSALELIMSKYREQMSQL 107 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888776 45666654443
No 396
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=57.38 E-value=84 Score=31.54 Aligned_cols=67 Identities=19% Similarity=0.318 Sum_probs=42.3
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHhhhH
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIF-------IDDNAKLAKERDSLAMTARNLSRDL 117 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a-------~de~~kL~~E~~sLa~TvKKL~RDv 117 (340)
.+|..||..+.+|+..-..|.= ++.+||++|+-...+.... .-||..|.+..++|..+-.||..|+
T Consensus 18 qKIqelE~QldkLkKE~qQrQf-------QleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdl 90 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQF-------QLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDL 90 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHH
Confidence 5678899999999865555533 3556666666555544333 3455556666666666777777766
Q ss_pred H
Q 019459 118 A 118 (340)
Q Consensus 118 a 118 (340)
.
T Consensus 91 q 91 (307)
T PF10481_consen 91 Q 91 (307)
T ss_pred h
Confidence 4
No 397
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=57.14 E-value=2.7e+02 Score=29.75 Aligned_cols=44 Identities=20% Similarity=0.141 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 019459 55 GTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAK 98 (340)
Q Consensus 55 ~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~k 98 (340)
...++.|..--+.+..++++...+...|++..++|.....+..+
T Consensus 81 ~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 124 (779)
T PRK11091 81 EESRQRLSRLVAKLEEMRERDLELNVQLKDNIAQLNQEIAEREK 124 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444454445555555555555555555555555555444433
No 398
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=57.12 E-value=1.1e+02 Score=25.16 Aligned_cols=43 Identities=19% Similarity=0.266 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019459 69 CELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTAR 111 (340)
Q Consensus 69 ~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvK 111 (340)
..|...-+.|+.+|-.+.+|+.....-|..+...-+....+|+
T Consensus 42 ~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir 84 (89)
T PF13747_consen 42 QRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIR 84 (89)
T ss_pred HHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555554444444444444444444443
No 399
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=57.11 E-value=1.8e+02 Score=27.73 Aligned_cols=20 Identities=40% Similarity=0.584 Sum_probs=10.4
Q ss_pred hHHhcCCCCchh--hhHHHHHH
Q 019459 19 EVLAVIPTDPYD--QLDLARKI 38 (340)
Q Consensus 19 eilsvLP~DPyE--QLdlArkI 38 (340)
++|..|=++++. ++..|+.-
T Consensus 42 ~~L~~ld~~~~~~~~~~~a~a~ 63 (327)
T TIGR02971 42 QVLAELDSRPERTAELDVARTQ 63 (327)
T ss_pred cEEEEecCcHHHHHHHHHHHHH
Confidence 567777555542 34444433
No 400
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=57.10 E-value=1.5e+02 Score=26.87 Aligned_cols=73 Identities=19% Similarity=0.314 Sum_probs=31.4
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
.+-.|..+..+|..+...+...-...+.++..+|..+..-...| ......|..|+..|...+|.+.-.+.+|+
T Consensus 51 e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L---~~~v~~Le~e~r~L~~~~~~~~~q~~rle 123 (158)
T PF09744_consen 51 ELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDL---QSQVEQLEEENRQLELKLKNLSDQSSRLE 123 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhhccccc
Confidence 33444444444444444444444444445544443332222211 11223355555555555555554444444
No 401
>PF13166 AAA_13: AAA domain
Probab=57.02 E-value=2e+02 Score=30.61 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=7.1
Q ss_pred hHHHHHHHhhcccCC
Q 019459 326 DLYLYFQGLLNRNVH 340 (340)
Q Consensus 326 DLY~~FegLL~R~~~ 340 (340)
..+..|-.++|++-|
T Consensus 671 ~~~~~~~r~~n~~SH 685 (712)
T PF13166_consen 671 EEFNSLYRLINDESH 685 (712)
T ss_pred hHHHHHHHHHhhcCC
Confidence 334445555555443
No 402
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=56.99 E-value=1.3e+02 Score=25.88 Aligned_cols=66 Identities=15% Similarity=0.129 Sum_probs=39.6
Q ss_pred hcCCCCchhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 019459 22 AVIPTDPYDQLDLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDN 96 (340)
Q Consensus 22 svLP~DPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~ 96 (340)
.|||...|.++.-|..|..-|- .++.++++...++-+.+. .+..-.-++..++++.+.+.....+.
T Consensus 2 ~~l~~~~~~~~~~A~~il~~A~--------~~a~~i~~~A~~~~e~~~-~~g~~~G~~~g~~e~~~~~~~~~~~~ 67 (166)
T TIGR02499 2 PVLRAEDLAALAQAQAILAAAR--------QRAEAILADAEEEAEASR-QLGYEQGLEQFWQEAAAQLAEWQQEA 67 (166)
T ss_pred ccCCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999998775 344555555544433322 12223345555556666555544443
No 403
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=56.81 E-value=1.2e+02 Score=33.01 Aligned_cols=93 Identities=20% Similarity=0.193 Sum_probs=63.8
Q ss_pred HHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHhHHHHH
Q 019459 39 TSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEA---------------------DSKLKIFIDDNA 97 (340)
Q Consensus 39 ts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~---------------------~~rl~~a~de~~ 97 (340)
.-..|+.|+.-+|-|++.|.....-+.+.|+.|+.+-..|+....|. -.||..-..|+=
T Consensus 591 lekG~Aeki~~me~Ei~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQgakKAVhdaK~ElA~~Y~klLagiKEKw 670 (790)
T PF07794_consen 591 LEKGYAEKIGFMEMEIGGLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQGAKKAVHDAKVELAAAYSKLLAGIKEKW 670 (790)
T ss_pred hhhhhHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999988877776554433 333333333433
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019459 98 KLAKERDSLAMTARNLSRDLAKLETFKRQLMQSL 131 (340)
Q Consensus 98 kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 131 (340)
--.||--.|-.+.-.+.-+++-|.-.-|.-+++-
T Consensus 671 v~KKe~t~le~qAaEvesNlaLidqi~kaaIdlt 704 (790)
T PF07794_consen 671 VAKKEYTVLEGQAAEVESNLALIDQITKAAIDLT 704 (790)
T ss_pred hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3345555666666666666666666666666654
No 404
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=56.75 E-value=65 Score=32.92 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019459 95 DNAKLAKERDSLAMTARNLSRDLAKLETFKRQL 127 (340)
Q Consensus 95 e~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~L 127 (340)
...+|.+....|...+++|...+..|+..-+..
T Consensus 376 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 376 QLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566666666666666666666555444333
No 405
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=56.54 E-value=87 Score=36.38 Aligned_cols=34 Identities=21% Similarity=0.112 Sum_probs=17.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 50 LETETGTMRQMLYEKDRLICELEERLSHVQKVYQ 83 (340)
Q Consensus 50 LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 83 (340)
+-.|+..|+++|.+..+..+++++++.+.+..++
T Consensus 147 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1123)
T PRK11448 147 LQQEVLTLKQQLELQAREKAQSQALAEAQQQELV 180 (1123)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Confidence 3444555556655445555555555555444444
No 406
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=56.52 E-value=2.7e+02 Score=29.57 Aligned_cols=8 Identities=25% Similarity=0.397 Sum_probs=3.7
Q ss_pred HHHHHHHh
Q 019459 278 EFFRQARS 285 (340)
Q Consensus 278 EFFRQARs 285 (340)
|.+..||.
T Consensus 280 e~~~~~~~ 287 (514)
T TIGR03319 280 EMVEKATK 287 (514)
T ss_pred HHHHHHHH
Confidence 44444443
No 407
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=56.51 E-value=94 Score=29.33 Aligned_cols=84 Identities=19% Similarity=0.173 Sum_probs=54.3
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHhhhHHHHHHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERD--SLAMTARNLSRDLAKLETF 123 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~--sLa~TvKKL~RDvaKLE~F 123 (340)
.|..||-.+..+|..|..=-..+..+- ..=.++..+......++++-..-.-+.+ .++..+.|+..=+.-|+++
T Consensus 3 ~v~~lee~l~~~~~~l~Kl~K~~k~~~----~~g~~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~~l~El~~~ 78 (215)
T cd07604 3 TVGALEESLEGDRVGLQKLKKAVKAIH----NSGLAHVENELQFAEALEKLGSKALSREEEDLGAAFLKFSVFTKELAAL 78 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888888876555554444 2223344444444444444332222222 5788899999999999999
Q ss_pred HHHHHhhccc
Q 019459 124 KRQLMQSLND 133 (340)
Q Consensus 124 Kk~LmqSLqe 133 (340)
++.||+.++.
T Consensus 79 ~~~L~~~~~~ 88 (215)
T cd07604 79 FKNLMQNLNN 88 (215)
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 408
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=56.46 E-value=1.4e+02 Score=26.23 Aligned_cols=14 Identities=21% Similarity=0.574 Sum_probs=6.2
Q ss_pred HHHHHHHHHHhhccc
Q 019459 119 KLETFKRQLMQSLND 133 (340)
Q Consensus 119 KLE~FKk~LmqSLqe 133 (340)
|...+|+. |..|..
T Consensus 99 K~~kyk~r-Lk~LG~ 112 (136)
T PF04871_consen 99 KRKKYKER-LKELGE 112 (136)
T ss_pred HHHHHHHH-HHHcCC
Confidence 44444443 344533
No 409
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=56.40 E-value=1.1e+02 Score=32.43 Aligned_cols=14 Identities=29% Similarity=0.525 Sum_probs=8.5
Q ss_pred CHHHHHHHHHHHHH
Q 019459 288 SYEQFSAFLASIKE 301 (340)
Q Consensus 288 SYEQFsaFLANIKE 301 (340)
++--|..|+|-|-+
T Consensus 447 ~~~~~~Slaaeid~ 460 (502)
T KOG0982|consen 447 TFSLFFSLAAEIDE 460 (502)
T ss_pred HHHHHHHHHHHHHH
Confidence 34456667777764
No 410
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=56.35 E-value=1.4e+02 Score=30.52 Aligned_cols=88 Identities=18% Similarity=0.244 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHH---
Q 019459 33 DLARKITSMAIASRVSKLETETGTMRQMLYEKD-----RLICELEERLSHVQKVYQEADSKLKIFIDDNA---KLAK--- 101 (340)
Q Consensus 33 dlArkIts~A~atRVs~LE~E~~~LR~~laEKd-----~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~---kL~~--- 101 (340)
+++.+|-..+-...+..++.+...|.+.+.+-+ .....+.++++.|...+..... +...++|.. +|.+
T Consensus 11 ~~~~~~~~~~~~~~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~-~~~~~~d~~~l~el~~~e~ 89 (364)
T TIGR00020 11 DLTSRLDTVRGSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEE-LKNSLEDLSELLELAVEED 89 (364)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcC
Confidence 466677666655666667777777776665422 2233333444444333222221 222222222 2221
Q ss_pred ---HHHHHHHHHHHHhhhHHHHH
Q 019459 102 ---ERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 102 ---E~~sLa~TvKKL~RDvaKLE 121 (340)
-+.-+...++.|.+++.+||
T Consensus 90 D~e~~~~a~~e~~~l~~~l~~le 112 (364)
T TIGR00020 90 DEETFNELDAELKALEKKLAELE 112 (364)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 13345577888999999999
No 411
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=56.12 E-value=1.1e+02 Score=30.30 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=30.9
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQE 84 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e 84 (340)
+|..|...|+.|.+++-.++..-+.....|+.....+..++.-
T Consensus 26 ~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k 68 (309)
T PF09728_consen 26 ALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSK 68 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777888888887777777777777777777766666653
No 412
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=55.94 E-value=33 Score=30.44 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=15.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 49 KLETETGTMRQMLYEKDRLICELEERLSHV 78 (340)
Q Consensus 49 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~l 78 (340)
..|.-+.+|..++..||..|..|++++..+
T Consensus 91 ~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~ 120 (131)
T PF04859_consen 91 TYEIVVKKLEAELRAKDSEIDRLREKLDEL 120 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555433
No 413
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=55.90 E-value=30 Score=36.15 Aligned_cols=72 Identities=21% Similarity=0.359 Sum_probs=50.3
Q ss_pred HHHHHHHHhhhhHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 019459 39 TSMAIASRVSKLETETGTMRQMLYEKD--RLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRD 116 (340)
Q Consensus 39 ts~A~atRVs~LE~E~~~LR~~laEKd--~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RD 116 (340)
....+..|+..-|.|+.+||.+|..+- ..-.||+.|+..|-..|++-...| +.|..||++|.-...+|.+.
T Consensus 356 ~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~l-------E~l~~ek~al~lqlErl~~~ 428 (511)
T PF09787_consen 356 QKSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQKQTQL-------ESLGSEKNALRLQLERLETQ 428 (511)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHHHHHH-------HHHHhhhhhccccHHHHHHH
Confidence 345566777777888888888888776 234567777666666666554444 56999999998887776654
Q ss_pred H
Q 019459 117 L 117 (340)
Q Consensus 117 v 117 (340)
+
T Consensus 429 l 429 (511)
T PF09787_consen 429 L 429 (511)
T ss_pred H
Confidence 4
No 414
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=55.72 E-value=80 Score=36.64 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=28.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 019459 51 ETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRD 116 (340)
Q Consensus 51 E~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RD 116 (340)
|.++..-+..+.+-.-.|...+-++..+..+|-.....+..+.++..+..++-+.+.+.|.+|.+.
T Consensus 398 ~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~ 463 (1174)
T KOG0933|consen 398 EDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKR 463 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444444444444444444444444444444444444444443
No 415
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=55.71 E-value=2.5e+02 Score=29.51 Aligned_cols=63 Identities=16% Similarity=0.085 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH---------HHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCC
Q 019459 75 LSHVQKVYQEADSKLKIFIDDNAKLAK---------ERDSLAMTARNLSRDLAKLETFKRQLMQSLNDDNSS 137 (340)
Q Consensus 75 ~~~le~~L~e~~~rl~~a~de~~kL~~---------E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~~~ 137 (340)
+.-++.++.++..|+..|.+....+.+ +-..+...|-+|..+++++++=..+|+..+.+++..
T Consensus 244 v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPq 315 (434)
T PRK15178 244 ILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPL 315 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Confidence 334444444555555554444444443 446788899999999999999888888888887765
No 416
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=55.68 E-value=93 Score=33.68 Aligned_cols=80 Identities=16% Similarity=0.178 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhhhHhHHHHHHHHHH--HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019459 38 ITSMAIASRVSKLETETGTMRQMLY--EKDRLICELEER--LSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNL 113 (340)
Q Consensus 38 Its~A~atRVs~LE~E~~~LR~~la--EKd~~i~~Lq~r--~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL 113 (340)
..--|+--|+..||.|.-.||.+.- .-+.++++-++. |..+..+|.++|.+.....++..++.+|+..+..-.-||
T Consensus 159 ~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skL 238 (596)
T KOG4360|consen 159 ELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKL 238 (596)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445788889999999999998742 233344444333 345666777777777776666666666655555544444
Q ss_pred hhhH
Q 019459 114 SRDL 117 (340)
Q Consensus 114 ~RDv 117 (340)
.-.+
T Consensus 239 lsql 242 (596)
T KOG4360|consen 239 LSQL 242 (596)
T ss_pred HHHH
Confidence 4433
No 417
>PRK11519 tyrosine kinase; Provisional
Probab=55.61 E-value=96 Score=33.77 Aligned_cols=26 Identities=12% Similarity=0.115 Sum_probs=13.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHH
Q 019459 49 KLETETGTMRQMLYEKDRLICELEER 74 (340)
Q Consensus 49 ~LE~E~~~LR~~laEKd~~i~~Lq~r 74 (340)
=|+.++..||++|.+.++.+.+.+.+
T Consensus 271 fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 271 FLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555444
No 418
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=55.59 E-value=2.2e+02 Score=30.95 Aligned_cols=72 Identities=11% Similarity=0.134 Sum_probs=52.5
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019459 47 VSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLA 118 (340)
Q Consensus 47 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDva 118 (340)
.+++-.|+++|-.+|+++++.|..+.=..+.++.-||...++=.+-.+|-..|..-..-+..-.-.-.-||.
T Consensus 228 l~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk 299 (596)
T KOG4360|consen 228 LSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELK 299 (596)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677899999999999999999999999999988888888777776666665555554444333333333
No 419
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=55.47 E-value=1.2e+02 Score=28.20 Aligned_cols=82 Identities=13% Similarity=0.228 Sum_probs=56.1
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKR 125 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk 125 (340)
+|...|.++..|+.+|..=-.....+-+ +=..+..+......++++-..--.+-..++..++|...-+..+++++.
T Consensus 3 ~l~~~E~~~~~l~~~l~kl~K~~~~~~~----ag~~~~~a~~~F~~~L~~~~~~~~~d~~i~~~l~kF~~~l~el~~~~~ 78 (200)
T cd07603 3 SLEQVEADVSELETRLEKLLKLCNGMVD----SGKTYVNANSLFVNSLNDLSDYFRDDSLVQNCLNKFIQALQEMNNFHT 78 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999888654443333322 334555566666666666555444555778889999999999999999
Q ss_pred HHHhhc
Q 019459 126 QLMQSL 131 (340)
Q Consensus 126 ~LmqSL 131 (340)
.|++-+
T Consensus 79 ~L~~q~ 84 (200)
T cd07603 79 ILLDQA 84 (200)
T ss_pred HHHHHH
Confidence 888543
No 420
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=55.44 E-value=82 Score=31.15 Aligned_cols=31 Identities=16% Similarity=0.149 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 58 RQMLYEKDRLICELEERLSHVQKVYQEADSK 88 (340)
Q Consensus 58 R~~laEKd~~i~~Lq~r~~~le~~L~e~~~r 88 (340)
|.+.-|.|+.+.-|+.|+..++..+...+.-
T Consensus 160 ~~~~~e~d~rnq~l~~~i~~l~~~l~~~~~~ 190 (264)
T PF07246_consen 160 KTQERENDRRNQILSHEISNLTNELSNLRND 190 (264)
T ss_pred HhhchhhhhHHHHHHHHHHHhhhhHHHhhch
Confidence 5555555666667777777777777665553
No 421
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=55.39 E-value=1.8e+02 Score=27.14 Aligned_cols=118 Identities=13% Similarity=0.116 Sum_probs=63.8
Q ss_pred CchhHHhcCCCCchhhhHHHHHH----HH-HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 16 LPDEVLAVIPTDPYDQLDLARKI----TS-MAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLK 90 (340)
Q Consensus 16 Lp~eilsvLP~DPyEQLdlArkI----ts-~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~ 90 (340)
+|+=-...+|+.-+-|+ |.+=| .+ .+|.-=..-||..-.++...|.+=++.-.+.++.+...|..|.++..+..
T Consensus 44 ~p~~~~~~~~~~l~w~~-I~FliL~~lL~k~~~~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~ 122 (204)
T PRK09174 44 FPPFDSTHYASQLLWLA-ITFGLFYLFMSRVILPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAH 122 (204)
T ss_pred CCCCcchhccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655555665544443 22222 21 12222224467777777778887777777888888888888888777776
Q ss_pred HhHHHHHHH-HHHHHHHHHH-----HHHHhhhHHHHHHHHHHHHhhcccc
Q 019459 91 IFIDDNAKL-AKERDSLAMT-----ARNLSRDLAKLETFKRQLMQSLNDD 134 (340)
Q Consensus 91 ~a~de~~kL-~~E~~sLa~T-----vKKL~RDvaKLE~FKk~LmqSLqeD 134 (340)
..+++-.+- .++....... -+++..=-.+++.-|...|+.|...
T Consensus 123 ~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A~~el~~~ 172 (204)
T PRK09174 123 SIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAKAMADVGSI 172 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665432211 1111111111 1123333345666777777766544
No 422
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=55.35 E-value=1.1e+02 Score=24.59 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=10.6
Q ss_pred HHHHhhhhHhHHHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYE 63 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laE 63 (340)
+-..|..+..++..++..+.+
T Consensus 6 F~~~v~~I~~~I~~i~~~v~~ 26 (117)
T smart00503 6 FFEKVEEIRANIQKISQNVAE 26 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555433
No 423
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=55.10 E-value=1.8e+02 Score=33.80 Aligned_cols=29 Identities=21% Similarity=0.094 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019459 81 VYQEADSKLKIFIDDNAKLAKERDSLAMT 109 (340)
Q Consensus 81 ~L~e~~~rl~~a~de~~kL~~E~~sLa~T 109 (340)
.+.....+|.....|-..+.+|...+-.+
T Consensus 484 ~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 484 EKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444333
No 424
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=54.98 E-value=1.5e+02 Score=26.92 Aligned_cols=48 Identities=8% Similarity=0.180 Sum_probs=34.5
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 019459 48 SKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDD 95 (340)
Q Consensus 48 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de 95 (340)
.-||..-.++...|.+-++.-.+.++-....+.+|.++..+.....+|
T Consensus 37 ~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 37 EIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777777777777777777777777877777776666
No 425
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.81 E-value=62 Score=31.63 Aligned_cols=8 Identities=25% Similarity=0.493 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 019459 119 KLETFKRQ 126 (340)
Q Consensus 119 KLE~FKk~ 126 (340)
+||.+|+.
T Consensus 97 ~l~~l~~~ 104 (247)
T COG3879 97 RLEKLRML 104 (247)
T ss_pred HHHHHHHH
Confidence 34445543
No 426
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=54.68 E-value=1.1e+02 Score=36.10 Aligned_cols=71 Identities=23% Similarity=0.296 Sum_probs=44.3
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRD 116 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RD 116 (340)
-|..||.++.+++..+.+.....+++++++..|.....+...+|....-+-..+..+-.-|..+|+.+-++
T Consensus 779 ~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~ 849 (1293)
T KOG0996|consen 779 SVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAA 849 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777666666666666666666666666555555555555444444455444444
No 427
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=54.68 E-value=2.7e+02 Score=31.22 Aligned_cols=89 Identities=16% Similarity=0.274 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhHHHHH----
Q 019459 32 LDLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSK----------LKIFIDDNA---- 97 (340)
Q Consensus 32 LdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~r----------l~~a~de~~---- 97 (340)
|-.|..-.-..+.+++..||-.+..|-.+.+.-...++..+.....|..+|..+.+. |+.-.-|+.
T Consensus 156 Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~ 235 (739)
T PF07111_consen 156 LTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEV 235 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCccc
Confidence 444555556667777777777655555444333344444444444444444433333 333332322
Q ss_pred ---HHHHHHHHHHHHHHHHhhhHHHH
Q 019459 98 ---KLAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 98 ---kL~~E~~sLa~TvKKL~RDvaKL 120 (340)
.-..||..|.+||++|..|=+-|
T Consensus 236 ~~~~we~Er~~L~~tVq~L~edR~~L 261 (739)
T PF07111_consen 236 HSQAWEPEREELLETVQHLQEDRDAL 261 (739)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12356777777777777765543
No 428
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=54.63 E-value=46 Score=28.19 Aligned_cols=33 Identities=12% Similarity=0.262 Sum_probs=16.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 019459 84 EADSKLKIFIDDNAKLAKERDSLAMTARNLSRD 116 (340)
Q Consensus 84 e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RD 116 (340)
....++..+.+++++|.++...+.+.+|+|.++
T Consensus 84 ~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 84 QLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444455555555555555555443
No 429
>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]
Probab=54.50 E-value=25 Score=34.68 Aligned_cols=47 Identities=23% Similarity=0.386 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019459 57 MRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDS 105 (340)
Q Consensus 57 LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~s 105 (340)
||.+.-||.+-| +++-.+..|..++|-..+|..|+++|.++-+|...
T Consensus 2 lRR~~R~RREyl--yrK~~E~~~k~~~ekk~~lr~ALe~nk~ip~elrk 48 (290)
T KOG2781|consen 2 LRRQARERREYL--YRKALEEQDKSLQEKKRRLREALEENKKIPKELRK 48 (290)
T ss_pred chHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHH
Confidence 355555554444 56777888899999999999999999999877543
No 430
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=54.27 E-value=1.8e+02 Score=27.59 Aligned_cols=68 Identities=18% Similarity=0.186 Sum_probs=35.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019459 50 LETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADS----KLKIFIDDNAKLAKERDSLAMTARNLSRDL 117 (340)
Q Consensus 50 LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~----rl~~a~de~~kL~~E~~sLa~TvKKL~RDv 117 (340)
-|.|+..|+.+..++...+.++..=+..+|..+++.-+ .-.....+..++..||+.+..-+..+.+-+
T Consensus 21 ~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sf 92 (207)
T PF05010_consen 21 KEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSF 92 (207)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhH
Confidence 34555556666665555555555555555544433221 222333445566777776666555554433
No 431
>PF10944 DUF2630: Protein of unknown function (DUF2630); InterPro: IPR020311 This entry contains proteins with no known function.
Probab=54.25 E-value=32 Score=28.41 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=42.6
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 41 MAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 41 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
.-|-.|+..|=+|-.+||.+++.-.-.-.+=.+|+..||.+|-++=+=|++
T Consensus 4 ~~Il~rI~~LV~EE~~LR~~~~~g~~~~~~e~~RL~~lE~~LDQCWDLLRq 54 (81)
T PF10944_consen 4 QDILARINELVAEEHELRSRLQAGEIDSDEEHARLRQLEVELDQCWDLLRQ 54 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357789999999999999999887766666678999999999888776655
No 432
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=54.23 E-value=2.1e+02 Score=27.48 Aligned_cols=83 Identities=20% Similarity=0.336 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------------------------------
Q 019459 54 TGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKER------------------------------ 103 (340)
Q Consensus 54 ~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~------------------------------ 103 (340)
+..|+.+|.||++.|-.|+.-+...|..+-|=..-=.-|.|.-++-+.++
T Consensus 59 ~~~L~~~LrEkEErILaLEad~~kWEqkYLEEs~mrq~a~dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~ 138 (205)
T PF12240_consen 59 ASNLKELLREKEERILALEADMTKWEQKYLEESAMRQFAMDAAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKC 138 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhH
Confidence 45578899999999999999988888766442221112222222222222
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhccccCC
Q 019459 104 DSLAMTARNLSRDLAKLETFKRQLMQSLNDDNS 136 (340)
Q Consensus 104 ~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~~ 136 (340)
.-|-+.||.|.-.|+.=++.=|.|=|-.+.|..
T Consensus 139 qemE~RIK~LhaqI~EKDAmIkVLQqrs~~~~~ 171 (205)
T PF12240_consen 139 QEMENRIKALHAQIAEKDAMIKVLQQRSRKDPG 171 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 234556777777777766666666665555543
No 433
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=54.22 E-value=2.2e+02 Score=27.90 Aligned_cols=69 Identities=12% Similarity=0.103 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019459 65 DRLICELEERLSHVQKVYQEADSKLKIFIDDNAK--LAKERDSLAMTARNLSRDLAKLETFKRQLMQSLND 133 (340)
Q Consensus 65 d~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~k--L~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 133 (340)
.....-|++++..++..|.++..+|..-.+++.- +..+-..+...+..|..+++.+|.=-..+.....+
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~ 239 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPE 239 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 3444556666666666666666666554444322 22333455666777777777776544444333333
No 434
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=54.12 E-value=1.8e+02 Score=31.66 Aligned_cols=40 Identities=18% Similarity=0.271 Sum_probs=18.1
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVY 82 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L 82 (340)
+.+.+..++.|+..|+..+.+-...+.+.+.....+|.++
T Consensus 340 l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~ 379 (594)
T PF05667_consen 340 LESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEEL 379 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444443
No 435
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=53.88 E-value=43 Score=35.50 Aligned_cols=49 Identities=24% Similarity=0.314 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 019459 66 RLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLM 128 (340)
Q Consensus 66 ~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~Lm 128 (340)
..+.+-|.+.++||.+|.. |.+|..-+....+++.+.|.+||..-+.|-
T Consensus 69 SALteqQ~kasELEKqLaa--------------LrqElq~~saq~~dle~KIkeLEaE~~~Lk 117 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEE--------------IRRELDVLNKQRGDDQRRIEKLGQDNAALA 117 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 3444555555555554444 334444444444444444445544444443
No 436
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=53.60 E-value=1.3e+02 Score=34.59 Aligned_cols=85 Identities=19% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHhhhHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFID----DNAKLAKERDSLAMTARNLSRDLA 118 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~d----e~~kL~~E~~sLa~TvKKL~RDva 118 (340)
|--.+..|++--..|-..+.+|+..+.+|++-+..+...-..+.++..+|.. +|+||..++..|-..++.-.|.+.
T Consensus 268 ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~e 347 (1265)
T KOG0976|consen 268 IEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAE 347 (1265)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q ss_pred HHHHHHHHH
Q 019459 119 KLETFKRQL 127 (340)
Q Consensus 119 KLE~FKk~L 127 (340)
-|..-+.-|
T Consensus 348 gfddk~~eL 356 (1265)
T KOG0976|consen 348 GFDDKLNEL 356 (1265)
T ss_pred chhHHHHHH
No 437
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=53.35 E-value=42 Score=36.67 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=26.7
Q ss_pred HHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 39 TSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQ 83 (340)
Q Consensus 39 ts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 83 (340)
|+.++-.-|..||.++.+.++.|.+++-++.+|.++++.++.+++
T Consensus 18 t~~~~~~~v~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~ 62 (732)
T KOG0614|consen 18 TARELQNLVPQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIA 62 (732)
T ss_pred chHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 444455556666666666666666666666666666655554433
No 438
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=53.13 E-value=2.1e+02 Score=27.37 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 53 ETGTMRQMLYEKDRLICELEERLSHVQK 80 (340)
Q Consensus 53 E~~~LR~~laEKd~~i~~Lq~r~~~le~ 80 (340)
++..+..+++..+..+.++++++..+..
T Consensus 136 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 163 (301)
T PF14362_consen 136 QIARLDAEIAALQAEIDQLEKEIDRAQQ 163 (301)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433
No 439
>PRK15396 murein lipoprotein; Provisional
Probab=53.10 E-value=71 Score=26.03 Aligned_cols=44 Identities=9% Similarity=0.221 Sum_probs=0.0
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKL 89 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl 89 (340)
+|.+|.+++..|..+...=...+..++..+.....+-..+++||
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~Rl 69 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRL 69 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 440
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=53.01 E-value=4.5 Score=44.96 Aligned_cols=81 Identities=25% Similarity=0.289 Sum_probs=0.0
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019459 47 VSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQ 126 (340)
Q Consensus 47 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~ 126 (340)
+..||.++..|+.++.+-++.+.+|......|+..+.+....|.-+......|.+.+.+|..++.-+.+.+.---.-|-.
T Consensus 182 ~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~ 261 (859)
T PF01576_consen 182 RKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQA 261 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhh
Confidence 45566666666666666666666666666666666666666655555555556666666665555555555444333333
Q ss_pred H
Q 019459 127 L 127 (340)
Q Consensus 127 L 127 (340)
|
T Consensus 262 L 262 (859)
T PF01576_consen 262 L 262 (859)
T ss_dssp -
T ss_pred h
Confidence 3
No 441
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=52.79 E-value=1.4e+02 Score=28.46 Aligned_cols=66 Identities=14% Similarity=0.184 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 019459 65 DRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQS 130 (340)
Q Consensus 65 d~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqS 130 (340)
......|+.+...++...+.....-....+++..|..+...+..-|.+|.-.+.+-+.=...|-+-
T Consensus 46 eeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~e 111 (246)
T PF00769_consen 46 EEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEE 111 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555554444444444566667777777777777777776666655544444443
No 442
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=52.71 E-value=57 Score=34.07 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=24.7
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 47 VSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEA 85 (340)
Q Consensus 47 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~ 85 (340)
|-.||.|+.-+...-....+ +..|+...+.++..+...
T Consensus 324 i~ELe~Ei~~~~~~~~~~~~-l~~L~~~~~~~~~~~~~~ 361 (448)
T PF05761_consen 324 IPELEQEIEIWNSKKYRFEE-LQELEELLEELQDHLDQL 361 (448)
T ss_dssp -TTHHHHHHHHHHTHHHHHH-HHHHHHHCHHHHCHHHHH
T ss_pred ehhhhhhhhhhhhcchhhhH-HHHHHHHHHHHHHHhccc
Confidence 56789998887766543333 777777777666665543
No 443
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=52.70 E-value=1.9e+02 Score=29.40 Aligned_cols=63 Identities=14% Similarity=0.202 Sum_probs=38.9
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERD 104 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~ 104 (340)
-|.+|-..|=.....|.++.....+.+.++++++.++.....+-+..|+..-++.++...|-+
T Consensus 256 kI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 256 KIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666666666666666666666666666665555555544433
No 444
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=52.54 E-value=48 Score=28.09 Aligned_cols=65 Identities=26% Similarity=0.334 Sum_probs=43.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH---------HhHHHHHHHHH-HHHHHHHHHHHHhh
Q 019459 51 ETETGTMRQMLYEKDRLICELEERLSHVQKVYQEAD--SKLK---------IFIDDNAKLAK-ERDSLAMTARNLSR 115 (340)
Q Consensus 51 E~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~--~rl~---------~a~de~~kL~~-E~~sLa~TvKKL~R 115 (340)
|-|+.-||.+|+|=+.+...|...++.+-..+-+.+ +.+. ..+++--|+++ +.+-|..-|.+|..
T Consensus 14 EEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls~kv~eLq~ 90 (96)
T PF11365_consen 14 EEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINELSGKVMELQY 90 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 889999999999999999999999988877664433 2211 23444444544 44455555555543
No 445
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=52.41 E-value=1.3e+02 Score=24.69 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019459 69 CELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAM 108 (340)
Q Consensus 69 ~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~ 108 (340)
.++++++..|+..-....++|-+++....+|..-+.-++.
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~ 74 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSR 74 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444433
No 446
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.39 E-value=59 Score=34.16 Aligned_cols=72 Identities=14% Similarity=0.218 Sum_probs=54.8
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDL 117 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDv 117 (340)
|-.+|-.|-.+||.+..=-...+-+-|.++..|-.+|..-.+-+++...||..|.=-|+.|..-|..++-.+
T Consensus 16 kyqklaqeysklraqakvlke~viee~gk~~kl~eelk~k~a~irrieaendsl~frndql~rrvenfqfe~ 87 (637)
T KOG4421|consen 16 KYQKLAQEYSKLRAQAKVLKEAVIEEQGKEAKLREELKQKAASIRRIEAENDSLGFRNDQLERRVENFQFEI 87 (637)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHhccCC
Confidence 567788888888888766556666678889999999999999999977777777777777766665554433
No 447
>PRK11519 tyrosine kinase; Provisional
Probab=52.34 E-value=1.2e+02 Score=33.04 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=21.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhccccCC
Q 019459 108 MTARNLSRDLAKLETFKRQLMQSLNDDNS 136 (340)
Q Consensus 108 ~TvKKL~RDvaKLE~FKk~LmqSLqeD~~ 136 (340)
.....|.||+.--+..=..|++.+++-.-
T Consensus 370 ~~~~~L~Re~~~~~~lY~~lL~r~~e~~i 398 (719)
T PRK11519 370 QEIVRLTRDVESGQQVYMQLLNKQQELKI 398 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34567788888877777788888877543
No 448
>PRK00846 hypothetical protein; Provisional
Probab=52.15 E-value=1.3e+02 Score=24.53 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCC
Q 019459 70 ELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSLNDDNS 136 (340)
Q Consensus 70 ~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~~ 136 (340)
++++|+..||..+.-...-+ +.|..+|-++++.+++|..=-+.|..-|.+-..
T Consensus 10 ~le~Ri~~LE~rlAfQe~tI--------------e~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 10 ALEARLVELETRLSFQEQAL--------------TELSEALADARLTGARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46677777766444333333 345566667777777777666666666665443
No 449
>PRK00106 hypothetical protein; Provisional
Probab=52.09 E-value=1.7e+02 Score=31.49 Aligned_cols=10 Identities=20% Similarity=0.385 Sum_probs=5.6
Q ss_pred HHHHHHHHhc
Q 019459 277 KEFFRQARSR 286 (340)
Q Consensus 277 KEFFRQARsR 286 (340)
-|++..||.-
T Consensus 300 Ee~v~k~~~e 309 (535)
T PRK00106 300 EELVEKNRLE 309 (535)
T ss_pred HHHHHHHHHH
Confidence 4666666543
No 450
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=51.87 E-value=18 Score=23.38 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019459 67 LICELEERLSHVQKVYQEAD 86 (340)
Q Consensus 67 ~i~~Lq~r~~~le~~L~e~~ 86 (340)
.+..|+.|+..||.+|.++.
T Consensus 2 E~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECR 21 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 45678888888888887764
No 451
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=51.81 E-value=75 Score=33.09 Aligned_cols=69 Identities=20% Similarity=0.300 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCC
Q 019459 68 ICELEERLSHVQKVYQEADSKLKIFI--DDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSLNDDNS 136 (340)
Q Consensus 68 i~~Lq~r~~~le~~L~e~~~rl~~a~--de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~~ 136 (340)
+.-+++|+..|+.++......|..+. .+...+..+...|...++.|.+-+..|+..-+.|-.+......
T Consensus 165 ~~L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~ 235 (475)
T PF10359_consen 165 IELIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDSESSSDQ 235 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Confidence 34455666666666666666655543 3455677888889999999999999998888877776644443
No 452
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=51.69 E-value=82 Score=35.86 Aligned_cols=64 Identities=27% Similarity=0.204 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHHHHHhhc
Q 019459 64 KDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMT--ARNLSRDLAKLETFKRQLMQSL 131 (340)
Q Consensus 64 Kd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~T--vKKL~RDvaKLE~FKk~LmqSL 131 (340)
+.+..++.+++....|++-.|+..+ .-|++++-+||.-+..+ .+|..++-++.|+|+++|+.|-
T Consensus 240 ~~r~eeEEer~~ee~E~~~eEak~k----kKekekek~er~KaeGklLTakQK~~~a~aea~l~~ll~sg 305 (1064)
T KOG1144|consen 240 RLRREEEEERRREEEEAQEEEAKEK----KKEKEKEKKERKKAEGKLLTAKQKEEAALAEAFLKQLLASG 305 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhcccchHhhHHHHHHHHHHHHHHHhcC
Confidence 3344445555555555554444333 24455566666655543 4788899999999999999886
No 453
>PRK13411 molecular chaperone DnaK; Provisional
Probab=51.58 E-value=1.2e+02 Score=32.87 Aligned_cols=58 Identities=22% Similarity=0.181 Sum_probs=38.2
Q ss_pred HhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHH
Q 019459 51 ETETGTMRQML---YEKDRLICELEERLSHVQKVYQEADSKLKI-----FIDDNAKLAKERDSLAM 108 (340)
Q Consensus 51 E~E~~~LR~~l---aEKd~~i~~Lq~r~~~le~~L~e~~~rl~~-----a~de~~kL~~E~~sLa~ 108 (340)
+.|+.++++++ .++|+...++.+..+.||.-+-.+..+|.. ..+|..++.+.-+.+..
T Consensus 504 ~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~~~~~~~~~er~~i~~~l~~~~~ 569 (653)
T PRK13411 504 SNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKENGELISEELKQRAEQKVEQLEA 569 (653)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 44566666655 677888888888888899988888888852 34444444444443333
No 454
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=51.56 E-value=1.8e+02 Score=26.11 Aligned_cols=40 Identities=15% Similarity=0.242 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 52 TETGTMRQMLYE-KDRLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 52 ~E~~~LR~~laE-Kd~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
+++..||..+.- .+..++.|+...+.|+..+....++|+.
T Consensus 58 a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ 98 (177)
T PF07798_consen 58 AAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELRE 98 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677766643 2344555566666666655555555544
No 455
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=51.53 E-value=2.2e+02 Score=26.96 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=40.1
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLIC-------ELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDL 117 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~-------~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDv 117 (340)
.+..+|+..+..++..|......+. .+++.+..|+........+...+...-.++...=.....-++-|..+|
T Consensus 17 ~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i 96 (264)
T PF06008_consen 17 PAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFI 96 (264)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777766666655444 344444444444444444444444444444444444444444444444
Q ss_pred HHHHH
Q 019459 118 AKLET 122 (340)
Q Consensus 118 aKLE~ 122 (340)
.+|..
T Consensus 97 ~~l~~ 101 (264)
T PF06008_consen 97 QNLQD 101 (264)
T ss_pred HHHHH
Confidence 44433
No 456
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=51.43 E-value=1.2e+02 Score=32.51 Aligned_cols=56 Identities=13% Similarity=0.115 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH---H----HHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 66 RLICELEERLSHVQKVYQEADSKLKIFI---D----DNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 66 ~~i~~Lq~r~~~le~~L~e~~~rl~~a~---d----e~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
+.+..|+++++.||..+.+.++.|.... + .-..|.+|.+.+...+..|.-.-..|+
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~ 625 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQ 625 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555553320 1 234455555555555555555544444
No 457
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=51.41 E-value=79 Score=29.55 Aligned_cols=80 Identities=23% Similarity=0.272 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019459 35 ARKITSMAIASRVSKLETETGTMRQMLYEKDR----LICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTA 110 (340)
Q Consensus 35 ArkIts~A~atRVs~LE~E~~~LR~~laEKd~----~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~Tv 110 (340)
|-+|-.-.+..-+..||.++..+|+++.+=.. .-.+...++..||....+.-.+- ..+..+...|-+.|
T Consensus 133 aW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn-------~eie~a~~~Le~ei 205 (221)
T PF05700_consen 133 AWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKN-------LEIEVACEELEQEI 205 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 34444555666678888888888888765222 22233344445555444444444 44555555555666
Q ss_pred HHHhhhHHHHH
Q 019459 111 RNLSRDLAKLE 121 (340)
Q Consensus 111 KKL~RDvaKLE 121 (340)
+.|.+.-++++
T Consensus 206 ~~l~~~~~~~~ 216 (221)
T PF05700_consen 206 EQLKRKAAELK 216 (221)
T ss_pred HHHHHHHHHHh
Confidence 66666655543
No 458
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.36 E-value=1.6e+02 Score=33.66 Aligned_cols=29 Identities=28% Similarity=0.268 Sum_probs=21.2
Q ss_pred HHHhhc-cccHHHHHHHHHHhhCCCChhHH
Q 019459 300 KELNAQ-KQTREETLRKAEEIFGTDNKDLY 328 (340)
Q Consensus 300 KELNAh-kQTREETL~KA~eIFG~eNkDLY 328 (340)
|+.|.- +|+-||.-++-+.|-|..+.++-
T Consensus 931 k~~l~dL~q~~eeie~e~~s~~~e~e~~~s 960 (970)
T KOG0946|consen 931 KEALEDLNQPVEEIEDEKVSIIGEQEASLS 960 (970)
T ss_pred HHHHHHhCCChhhHHhhhhcccchhhhhhh
Confidence 444443 68888888888888888877663
No 459
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=51.07 E-value=1.6e+02 Score=25.17 Aligned_cols=21 Identities=10% Similarity=0.278 Sum_probs=10.5
Q ss_pred HHHHHHhhhhHhHHHHHHHHH
Q 019459 41 MAIASRVSKLETETGTMRQML 61 (340)
Q Consensus 41 ~A~atRVs~LE~E~~~LR~~l 61 (340)
.-+-.++.+||.++..+..++
T Consensus 11 ~~L~~~~~~le~~i~~~~~~~ 31 (171)
T PF03357_consen 11 RRLEKQIKRLEKKIKKLEKKA 31 (171)
T ss_dssp HHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544443
No 460
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=51.07 E-value=1.3e+02 Score=28.39 Aligned_cols=84 Identities=14% Similarity=0.104 Sum_probs=54.0
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKR 125 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk 125 (340)
+|..+|.|+..|..+|.+=-.....+- ..=.++..+.......+.+-...-.+...++..++|...-+..++.+++
T Consensus 3 ~i~~~E~~~~~le~~l~kl~K~~k~~~----~agk~~~~a~~~F~~~L~~f~~~~~~D~~i~~~l~kFs~~l~ei~~~~~ 78 (200)
T cd07639 3 AIEEVEAEVSELETRLEKLVKLGSGML----EGGRHYCAASRAFVDGLCDLAHHGPKDPMMAECLEKFSDGLNHILDSHA 78 (200)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888765433333322 2222444555555555555544444555578888888888888888888
Q ss_pred HHHhhccc
Q 019459 126 QLMQSLND 133 (340)
Q Consensus 126 ~LmqSLqe 133 (340)
.||...+.
T Consensus 79 ~Ll~~~~~ 86 (200)
T cd07639 79 ELLEATQF 86 (200)
T ss_pred HHHHHHHH
Confidence 88876543
No 461
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=50.95 E-value=52 Score=26.78 Aligned_cols=49 Identities=20% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFID 94 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~d 94 (340)
|+..+|..|+..+..|+..+ .-+.+|.+|+..+..+|...+.++....+
T Consensus 15 ~vd~KVdaLq~~V~~l~~~~----~~v~~l~~klDa~~~~l~~l~~~V~~I~~ 63 (75)
T PF05531_consen 15 AVDDKVDALQTQVDDLESNL----PDVTELNKKLDAQSAQLTTLNTKVNEIQD 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHHHHHHHHHHHHHH
No 462
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=50.94 E-value=1.3e+02 Score=24.12 Aligned_cols=23 Identities=9% Similarity=0.159 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhH
Q 019459 95 DNAKLAKERDSLAMTARNLSRDL 117 (340)
Q Consensus 95 e~~kL~~E~~sLa~TvKKL~RDv 117 (340)
+.+.|.+|...+-..++++.+++
T Consensus 51 e~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 51 EVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445544444444444444
No 463
>PF13514 AAA_27: AAA domain
Probab=50.81 E-value=2.2e+02 Score=32.69 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019459 97 AKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSL 131 (340)
Q Consensus 97 ~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 131 (340)
..|..|+..+...++.+.+....+..-...|-+.+
T Consensus 936 a~l~~e~e~~~a~l~~~~~~~~~~~la~~lL~~a~ 970 (1111)
T PF13514_consen 936 AELEQEREEAEAELEELAEEWAALRLAAELLEEAI 970 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666555555555554444
No 464
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=50.80 E-value=2.4e+02 Score=28.58 Aligned_cols=78 Identities=21% Similarity=0.269 Sum_probs=42.6
Q ss_pred HHHHhhhhHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019459 43 IASRVSKLETETGTMRQMLY----EKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLA 118 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~la----EKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDva 118 (340)
|..-+.-|-+|-..|..+|. .|+++-.+++.=.+.|-.++++.+.....-.|-.-.++.++|--.--=-|++-||+
T Consensus 61 y~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S 140 (305)
T PF14915_consen 61 YNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVS 140 (305)
T ss_pred HhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHH
Confidence 55566777788888888872 34556666665555566666665554433333333344444433333344444444
Q ss_pred HH
Q 019459 119 KL 120 (340)
Q Consensus 119 KL 120 (340)
-|
T Consensus 141 ~l 142 (305)
T PF14915_consen 141 NL 142 (305)
T ss_pred hH
Confidence 33
No 465
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=50.76 E-value=2.8e+02 Score=29.96 Aligned_cols=64 Identities=17% Similarity=0.139 Sum_probs=38.1
Q ss_pred HHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019459 39 TSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKE 102 (340)
Q Consensus 39 ts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E 102 (340)
+-.-|..||..|=.+......|..-=......|+.|+...|.........|+.+.+....|++|
T Consensus 414 Ik~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDE 477 (518)
T PF10212_consen 414 IKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDE 477 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888887777666666665566666677777655544444444444444444444444
No 466
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=50.39 E-value=1.6e+02 Score=25.21 Aligned_cols=31 Identities=13% Similarity=0.253 Sum_probs=13.4
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEERL 75 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~ 75 (340)
.++...+..+..+|..|..-.....+.|.+|
T Consensus 17 ~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~Y 47 (132)
T PF07926_consen 17 EQEEDAEEQLQSLREDLESQAKIAQEAQQKY 47 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 467
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=50.35 E-value=1.8e+02 Score=27.11 Aligned_cols=79 Identities=15% Similarity=0.222 Sum_probs=55.8
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKR 125 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk 125 (340)
+|..+|.++..|..+|..=-..+.++-+- -.+|.-+......++.|-......-..+++++++...-+..+++++.
T Consensus 3 ~~~~~E~~~~~le~~l~kl~K~~~~~~d~----g~~~~~a~~~F~~~l~d~~~~~~gd~~i~~~L~kF~~~l~ei~~~~~ 78 (200)
T cd07637 3 TIDEVETDVVEIEAKLDKLVKLCSGMIEA----GKAYATTNKLFVSGIRDLSQQCKKDEMISECLDKFGDSLQEMVNYHM 78 (200)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999887655555555443 44555566666666777666666666677777777777777777777
Q ss_pred HHH
Q 019459 126 QLM 128 (340)
Q Consensus 126 ~Lm 128 (340)
.|+
T Consensus 79 ~l~ 81 (200)
T cd07637 79 ILF 81 (200)
T ss_pred HHH
Confidence 777
No 468
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=50.30 E-value=81 Score=33.95 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=54.0
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFK 124 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FK 124 (340)
||..-|...=+|-....++.+.|++|+.++..+|..|.++...+....++++.+ ...--.-+.||.|.+-+|.-.-
T Consensus 474 ~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e---~~a~~~E~eklE~el~~lnL~s 549 (622)
T COG5185 474 RIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERE---LVAQRIEIEKLEKELNDLNLLS 549 (622)
T ss_pred HHHHHhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHhhhhc
Confidence 444444444456777788899999999999999999999999998876666543 3344445667777776665433
No 469
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=50.23 E-value=1.8e+02 Score=25.64 Aligned_cols=53 Identities=15% Similarity=0.244 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 70 ELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 70 ~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
+|..|+..++..|.+..+--.+..+|-..+..+-..+-.-|+.+++-|.-||.
T Consensus 65 hLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ 117 (126)
T PF07889_consen 65 HLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEG 117 (126)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888888888888887777777777777777777777777776664
No 470
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=50.21 E-value=1.8e+02 Score=33.40 Aligned_cols=75 Identities=19% Similarity=0.272 Sum_probs=60.7
Q ss_pred CCCchhHHhcCCCCchhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019459 14 FHLPDEVLAVIPTDPYDQLDLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFI 93 (340)
Q Consensus 14 f~Lp~eilsvLP~DPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~ 93 (340)
-++|.+....+=.|-.+-|+|+-+.- ++++..-..+|..++.+++.+..|+.|.+..+.+-.+....+..++
T Consensus 527 ~~i~~~~a~l~~~de~~~l~~dl~~~--------~r~rq~~~~~r~~ld~leaa~e~lE~r~~~~e~~~~e~~se~e~~l 598 (984)
T COG4717 527 TDIPEELARLLITDELPELAVDLLVQ--------SRIRQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQSEWEEAL 598 (984)
T ss_pred CCCChHHHHHHHhhhhhhhhhhhhhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 46777777777777766677765543 4567788999999999999999999999999999988888888877
Q ss_pred HHH
Q 019459 94 DDN 96 (340)
Q Consensus 94 de~ 96 (340)
++-
T Consensus 599 ~~l 601 (984)
T COG4717 599 DEL 601 (984)
T ss_pred Hhc
Confidence 764
No 471
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=50.11 E-value=1.2e+02 Score=32.84 Aligned_cols=49 Identities=12% Similarity=0.232 Sum_probs=37.0
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
++.|...++.-...+|.+..+-.+.+.+++.|+..||..|.+.......
T Consensus 355 l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~ 403 (656)
T PRK06975 355 LVQRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQA 403 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777788888888888888877777665433
No 472
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=49.91 E-value=1.3e+02 Score=26.31 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=14.9
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 019459 41 MAIASRVSKLETETGTMRQMLYEKDRLICELEER 74 (340)
Q Consensus 41 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r 74 (340)
-.+..|+...+.++..++..|.+=...+.+|++.
T Consensus 33 ~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~ 66 (141)
T PF13874_consen 33 EDLKKRVEAQEEEIAQHRERLKEINDKLEELQKH 66 (141)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567888888888888888887666666666444
No 473
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=49.63 E-value=1.4e+02 Score=33.14 Aligned_cols=63 Identities=17% Similarity=0.303 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhhccc
Q 019459 71 LEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARN-LSRDLAKLETFKRQLMQSLND 133 (340)
Q Consensus 71 Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKK-L~RDvaKLE~FKk~LmqSLqe 133 (340)
++++...++..+.++........++.++|.++++.+....++ .++-+.+.+.-=+.++.-|++
T Consensus 532 ~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 532 LEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444445555555555555554443332 233333333333345555543
No 474
>PRK13410 molecular chaperone DnaK; Provisional
Probab=49.59 E-value=1.5e+02 Score=32.35 Aligned_cols=41 Identities=24% Similarity=0.238 Sum_probs=28.4
Q ss_pred HhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 51 ETETGTMRQML---YEKDRLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 51 E~E~~~LR~~l---aEKd~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
+.|+.++.+++ +++|+...++.++.+.+|.-+.++..+|..
T Consensus 504 ~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~ 547 (668)
T PRK13410 504 EQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRD 547 (668)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666444 567777777777778888888777777754
No 475
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=49.55 E-value=2.8e+02 Score=28.48 Aligned_cols=92 Identities=18% Similarity=0.258 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHH-----
Q 019459 34 LARKITSMAIASRVSKLETETGTMRQMLYEK-----DRLICELEERLSHVQKVYQEADSKLKIFIDDN---AKLA----- 100 (340)
Q Consensus 34 lArkIts~A~atRVs~LE~E~~~LR~~laEK-----d~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~---~kL~----- 100 (340)
|+++|....=.-.+..++.+...|..+|.+- ......|.++++.|...+.... ++...++|. .+|.
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~~-~l~~~~~e~~~~~ell~~e~D 90 (367)
T PRK00578 12 LDEKLENIRGVLDVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTLE-ELRQRLDDLEELLELAEEEDD 90 (367)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCC
Confidence 5666666655566667777777777666532 1224444445554444332222 233333332 2222
Q ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 019459 101 -KERDSLAMTARNLSRDLAKLETFKRQLM 128 (340)
Q Consensus 101 -~E~~sLa~TvKKL~RDvaKLE~FKk~Lm 128 (340)
+-+..+...++.|...+.+|| ++ .|+
T Consensus 91 ~el~~~a~~e~~~l~~~l~~le-~~-~ll 117 (367)
T PRK00578 91 EETLAEAEAELKALEKKLAALE-LE-RLL 117 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HH-Hhc
Confidence 122345577788888888888 44 444
No 476
>PTZ00421 coronin; Provisional
Probab=49.46 E-value=24 Score=36.80 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=30.9
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 41 MAIASRVSKLETETGTMRQMLYEKDRLICELEERLS 76 (340)
Q Consensus 41 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~ 76 (340)
.|++..|...+.|+.++|..|.+|+.+..+.-+++-
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (493)
T PTZ00421 456 QALSEKLRTQHEEIKRCREALQKKESIVMETLEKIQ 491 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 478889999999999999999999998887766653
No 477
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=49.42 E-value=1.4e+02 Score=24.24 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 99 LAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 99 L~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
|..|-..|...++.|.-++..+|.
T Consensus 72 l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 72 LKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444333
No 478
>PLN02678 seryl-tRNA synthetase
Probab=49.39 E-value=1.3e+02 Score=31.50 Aligned_cols=40 Identities=10% Similarity=0.215 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019459 94 DDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSLND 133 (340)
Q Consensus 94 de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 133 (340)
++...|.+|=..|...++.|..++..+|.=-..+|.+|-.
T Consensus 71 ~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPN 110 (448)
T PLN02678 71 EDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGN 110 (448)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3445566667777777788887777777777778887743
No 479
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=49.36 E-value=55 Score=35.79 Aligned_cols=54 Identities=24% Similarity=0.286 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 69 CELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 69 ~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
.+|+..+..||.+++.-++.|++-.-+...|-+|-+.|-.-+-||.+++.|+-+
T Consensus 20 ~~~~~~v~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~~ltnel~k~r~ 73 (732)
T KOG0614|consen 20 RELQNLVPQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIAKLTNELDKLRS 73 (732)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhc
Confidence 345666666666676766777766666677888888888888899998888765
No 480
>PF13514 AAA_27: AAA domain
Probab=48.95 E-value=4e+02 Score=30.60 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhh----CCCChhHHHHHH
Q 019459 309 REETLRKAEEIF----GTDNKDLYLYFQ 332 (340)
Q Consensus 309 REETL~KA~eIF----G~eNkDLY~~Fe 332 (340)
+...|.+|.+|| |....+|+..++
T Consensus 978 ~p~vl~~As~~f~~LT~G~Y~~l~~d~d 1005 (1111)
T PF13514_consen 978 QPPVLARASEYFSRLTGGRYSRLRVDED 1005 (1111)
T ss_pred hHHHHHHHHHHHHHHhCCCCceeeeccc
Confidence 356677787777 323345555443
No 481
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=48.85 E-value=1.6e+02 Score=31.36 Aligned_cols=59 Identities=15% Similarity=0.278 Sum_probs=28.8
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAK 101 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~ 101 (340)
+..++..|+.....+...+.++....-++++++..+...|.+.........+.-..|.+
T Consensus 349 l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~ 407 (560)
T PF06160_consen 349 LEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRK 407 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555554444444444333333333333333
No 482
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.77 E-value=1.3e+02 Score=24.44 Aligned_cols=50 Identities=24% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019459 65 DRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLS 114 (340)
Q Consensus 65 d~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~ 114 (340)
++-|.+|+.|++-=|..+.+.++-|..-.-.-.|++.--+.|.+-+|+++
T Consensus 7 E~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 7 EARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 483
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=48.69 E-value=17 Score=35.31 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhhhHhHHHHHHHHHH
Q 019459 38 ITSMAIASRVSKLETETGTMRQMLY 62 (340)
Q Consensus 38 Its~A~atRVs~LE~E~~~LR~~la 62 (340)
.+.-|-..|++.||.|..+||+|+|
T Consensus 115 ~~~~~AlqKIsALEdELs~LRaQIA 139 (253)
T PF05308_consen 115 PANEAALQKISALEDELSRLRAQIA 139 (253)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556788999999999999986
No 484
>PRK14143 heat shock protein GrpE; Provisional
Probab=48.68 E-value=1.4e+02 Score=28.83 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHhhhHHH-----HHHHHHHH
Q 019459 62 YEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDS-LAMTARNLSRDLAK-----LETFKRQL 127 (340)
Q Consensus 62 aEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~s-La~TvKKL~RDvaK-----LE~FKk~L 127 (340)
++.+..+.+|++++..|+.++.+...++.++..|.+++-+-... .....+.....+.+ +.+|.|.|
T Consensus 63 ~~~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl 134 (238)
T PRK14143 63 ADNAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERAR 134 (238)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
No 485
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=48.49 E-value=1.4e+02 Score=34.61 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=11.2
Q ss_pred cccHHHHHHHHHHhhCC
Q 019459 306 KQTREETLRKAEEIFGT 322 (340)
Q Consensus 306 kQTREETL~KA~eIFG~ 322 (340)
-|+-=|+|.||-+.+|.
T Consensus 688 ~~c~vdvl~ka~~~y~e 704 (1243)
T KOG0971|consen 688 SQCSVDVLKKAGSLYPE 704 (1243)
T ss_pred ccCCHHHHHHHhhccch
Confidence 35566777777776664
No 486
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=48.42 E-value=3.1e+02 Score=27.89 Aligned_cols=100 Identities=21% Similarity=0.331 Sum_probs=59.0
Q ss_pred CCCCCchhHHhcCCCCc-hhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
Q 019459 12 PDFHLPDEVLAVIPTDP-YDQLDLARKITSMAIASRVSKLETETGTMRQMLY-----------EKDRLICELEERLSHVQ 79 (340)
Q Consensus 12 ~~f~Lp~eilsvLP~DP-yEQLdlArkIts~A~atRVs~LE~E~~~LR~~la-----------EKd~~i~~Lq~r~~~le 79 (340)
+||+.-+-|=..+|+.- ..+||--. ..+..++..|+.|+..+-...+ +-...|.+|-.++....
T Consensus 2 ~dfdpv~~in~lfp~e~SL~~ld~~i----~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik 77 (383)
T PF04100_consen 2 PDFDPVDYINELFPDEQSLSNLDELI----AKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIK 77 (383)
T ss_pred CCCCHHHHHHHhCCChHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH
Confidence 47777777778888732 24444332 4555667777777765544332 33344555555555555
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 019459 80 KVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSR 115 (340)
Q Consensus 80 ~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~R 115 (340)
..=.++.+-+.....|..+|-.=|.+|..++.-|+|
T Consensus 78 ~kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT~Lkr 113 (383)
T PF04100_consen 78 SKAEESEQMVQEITRDIKQLDNAKRNLTQSITTLKR 113 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544455555555555556677777777777666655
No 487
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=48.37 E-value=77 Score=32.11 Aligned_cols=45 Identities=31% Similarity=0.478 Sum_probs=25.8
Q ss_pred HHHHhhhhHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYE---KDRLICELEERLSHVQKVYQEADS 87 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laE---Kd~~i~~Lq~r~~~le~~L~e~~~ 87 (340)
+..++.+||.++..|..+|.+ +...+.+|++++.+++..+.++..
T Consensus 247 l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~ 294 (406)
T PF02388_consen 247 LQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEE 294 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666655 344555555555555555555444
No 488
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=48.24 E-value=19 Score=38.99 Aligned_cols=75 Identities=21% Similarity=0.287 Sum_probs=0.0
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKL 120 (340)
+|..|+.++...+.....-...+..+.++....+..+.....++.....++..|..|+..|-..++-|...|.++
T Consensus 462 ~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~ 536 (722)
T PF05557_consen 462 QLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEKL 536 (722)
T ss_dssp --------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 489
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=48.14 E-value=3.7e+02 Score=28.58 Aligned_cols=43 Identities=21% Similarity=0.408 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019459 72 EERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLS 114 (340)
Q Consensus 72 q~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~ 114 (340)
+.-+..+..+.++...||...-++-.+|..+.++|-+.-|.|+
T Consensus 136 qQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 136 QQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666677777766666677777777666666666
No 490
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=48.10 E-value=3.5e+02 Score=28.39 Aligned_cols=95 Identities=20% Similarity=0.218 Sum_probs=0.0
Q ss_pred hhh-hHHHHHHHHHHHHHHhh----hhHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----
Q 019459 29 YDQ-LDLARKITSMAIASRVS----KLETETGTMRQMLYEK--DRLICELEERLSHVQKVYQEADSKLKIFIDDN----- 96 (340)
Q Consensus 29 yEQ-LdlArkIts~A~atRVs----~LE~E~~~LR~~laEK--d~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~----- 96 (340)
++. ++-.+.=..+.+...+. .+..|..+.|.+|.++ +++-.+|+.+-..++..|.+.-.....-++..
T Consensus 286 ~~e~~~~~~~~~~~~le~~~~~~~~~~~~e~~~~~~~l~~~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~~~~~i 365 (582)
T PF09731_consen 286 REELLSKLREELEQELEEKRAELEEELREEFEREREELEEKYEEELRQELKRQEEAHEEHLKNELREQAIELQREFEKEI 365 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -HHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 019459 97 -AKLAKERDSLAMTARNLSRDLAKLETF 123 (340)
Q Consensus 97 -~kL~~E~~sLa~TvKKL~RDvaKLE~F 123 (340)
.++.+||+.-...+..|+..|.-||.+
T Consensus 366 ~~~v~~Er~~~~~~l~~~~~~~~~le~~ 393 (582)
T PF09731_consen 366 KEKVEQERNGRLAKLAELNSRLKALEEA 393 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=48.10 E-value=2.1e+02 Score=30.08 Aligned_cols=75 Identities=13% Similarity=0.153 Sum_probs=0.0
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---------------HHHHHHHHHHHHHHHH
Q 019459 48 SKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDN---------------AKLAKERDSLAMTARN 112 (340)
Q Consensus 48 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~---------------~kL~~E~~sLa~TvKK 112 (340)
++.|.=++.||..+.+..++..+||.+-..+|..|+-+..-...+..|- .-..+|+..|-.-=+.
T Consensus 281 tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~ 360 (442)
T PF06637_consen 281 TKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDS 360 (442)
T ss_pred HHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhHHHHHH
Q 019459 113 LSRDLAKLET 122 (340)
Q Consensus 113 L~RDvaKLE~ 122 (340)
|.+.++..+.
T Consensus 361 L~keLeekkr 370 (442)
T PF06637_consen 361 LAKELEEKKR 370 (442)
T ss_pred HHHHHHHHHH
No 492
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=48.06 E-value=4.4e+02 Score=29.53 Aligned_cols=115 Identities=22% Similarity=0.228 Sum_probs=0.0
Q ss_pred CchhHHhcCCCCchhhhHHHHHHHHHHHHHHhhhhHhHHHHHHH---------HHHHHHHHHHHHHHHHHHHH-------
Q 019459 16 LPDEVLAVIPTDPYDQLDLARKITSMAIASRVSKLETETGTMRQ---------MLYEKDRLICELEERLSHVQ------- 79 (340)
Q Consensus 16 Lp~eilsvLP~DPyEQLdlArkIts~A~atRVs~LE~E~~~LR~---------~laEKd~~i~~Lq~r~~~le------- 79 (340)
++-|.+.-+|..-..=|++..+---+.+..|+-.+..+...=.. ++.+.+.++.+|+..+....
T Consensus 378 ~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~ 457 (698)
T KOG0978|consen 378 LRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEME 457 (698)
T ss_pred HHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 019459 80 ----------KVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQS 130 (340)
Q Consensus 80 ----------~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqS 130 (340)
.+.+..-..+.-+.|.|-||-.|+...-+.+|-|..+..+|+.-..+|-.+
T Consensus 458 t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~ 518 (698)
T KOG0978|consen 458 TIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKAS 518 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=47.91 E-value=20 Score=29.75 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019459 84 EADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSL 131 (340)
Q Consensus 84 e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 131 (340)
+-+.-|....++...|.+|++.|-..+..|+..+..++.-...|-+.|
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
No 494
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=47.71 E-value=1.6e+02 Score=27.94 Aligned_cols=65 Identities=12% Similarity=0.009 Sum_probs=0.0
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019459 48 SKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARN 112 (340)
Q Consensus 48 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKK 112 (340)
..++.++..++.++...+..+..++..+..++.++..+.+.+..+..+.....++-+....-.++
T Consensus 76 ~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~ 140 (334)
T TIGR00998 76 TNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFKK 140 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHC
No 495
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=47.68 E-value=1.7e+02 Score=33.74 Aligned_cols=76 Identities=17% Similarity=0.230 Sum_probs=0.0
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 47 VSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 47 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
+-+|-+++..||..|.|-.+....+-++++.||..-.++-.-.+...+-+++--.|..+|-.-.-++...++-|.+
T Consensus 325 nmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn 400 (1265)
T KOG0976|consen 325 NMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKN 400 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=47.67 E-value=2.5e+02 Score=26.61 Aligned_cols=77 Identities=21% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKL 120 (340)
+.+.+..|-.-.+|-.+-+--++.|++-++|+..|...|+-+...-..+.+.+....+|-..|...-...+..|.+|
T Consensus 97 t~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~l 173 (192)
T PF11180_consen 97 TARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQL 173 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=47.53 E-value=17 Score=39.27 Aligned_cols=75 Identities=23% Similarity=0.322 Sum_probs=0.0
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 47 VSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 47 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
...||.++..|...+.+....+..+...+..+...+......+....++..+|.+++..|...+.+|.+.++-||
T Consensus 456 ~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le 530 (722)
T PF05557_consen 456 KAELEAQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELE 530 (722)
T ss_dssp --------------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=47.50 E-value=2.5e+02 Score=26.59 Aligned_cols=73 Identities=23% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHHHHHH
Q 019459 55 GTMRQMLYEKDRLICELEER-----LSHVQKVYQEADSKLKIFIDDNAKLAKERDSL-AMTARNLSRDLAKLETFKRQL 127 (340)
Q Consensus 55 ~~LR~~laEKd~~i~~Lq~r-----~~~le~~L~e~~~rl~~a~de~~kL~~E~~sL-a~TvKKL~RDvaKLE~FKk~L 127 (340)
..|...|+|=++...++++| ...+|.++.+|..=|.++...-.+...|+..| ...-.+|+.=-+||.-.+..|
T Consensus 123 ~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l 201 (264)
T PF06008_consen 123 EDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLL 201 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=47.49 E-value=1.4e+02 Score=23.68 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHhhhHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKL---AKERDSLAMTARNLSRDLAK 119 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL---~~E~~sLa~TvKKL~RDvaK 119 (340)
|.+-|+.|+..+..|-.. +-..+|++++..+-....+.-......+.....+ .........+.-||.+|+..
T Consensus 8 in~~v~~l~k~~~~lGt~-----~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~ 82 (102)
T PF14523_consen 8 INQNVSQLEKLVNQLGTP-----RDSQELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKE 82 (102)
T ss_dssp HHHHHHHHHHHHHHH-SS-----S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q ss_pred H
Q 019459 120 L 120 (340)
Q Consensus 120 L 120 (340)
+
T Consensus 83 ~ 83 (102)
T PF14523_consen 83 A 83 (102)
T ss_dssp H
T ss_pred H
No 500
>PF09302 XLF: XLF (XRCC4-like factor); InterPro: IPR015381 XLF (also called Cernunnos) interacts with the XRCC4-DNA ligase IV complex to promote DNA non-homologous end-joining. It directly interacts with the XRCC4-Ligase IV complex and siRNA-mediated downregulation of XLF in human cell lines leads to radio-sensitivity and impaired DNA non-homologous end-joining []. XLF is homologous to the yeast non-homologous end-joining factor Nej1 []. ; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z56_A 3RWR_D 3Q4F_A 3SR2_H 2R9A_A 2QM4_C.
Probab=47.44 E-value=24 Score=31.12 Aligned_cols=35 Identities=26% Similarity=0.453 Sum_probs=0.0
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSH 77 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~ 77 (340)
+...+..|+.++..|...|.+||..|..|.++++.
T Consensus 137 ll~~~~~l~~~~~~L~~~l~~KD~~i~~l~~~~~~ 171 (171)
T PF09302_consen 137 LLRMSSALQRQVESLKDLLKEKDKEIEKLRDKLED 171 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Done!