Query 019459
Match_columns 340
No_of_seqs 78 out of 80
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 16:25:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019459.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019459hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ld7_B Paired amphipathic heli 98.0 1.6E-05 5.4E-10 62.1 8.0 67 270-337 5-72 (75)
2 2cr7_A Paired amphipathic heli 97.5 0.00051 1.8E-08 53.9 8.8 65 272-337 9-75 (80)
3 2czy_A Paired amphipathic heli 97.2 0.001 3.5E-08 51.8 7.2 62 275-337 6-69 (77)
4 1c1g_A Tropomyosin; contractIl 96.9 0.027 9.2E-07 47.9 14.1 79 42-120 3-81 (284)
5 3u1c_A Tropomyosin alpha-1 cha 96.5 0.054 1.9E-06 43.9 12.8 80 42-121 20-99 (101)
6 3a7p_A Autophagy protein 16; c 96.2 0.046 1.6E-06 48.1 11.3 76 45-120 68-144 (152)
7 3hnw_A Uncharacterized protein 96.1 0.066 2.3E-06 45.9 11.4 70 38-114 61-130 (138)
8 3u59_A Tropomyosin beta chain; 96.0 0.098 3.3E-06 42.2 11.6 80 42-121 20-99 (101)
9 1g1e_B SIN3A; four-helix bundl 95.7 0.025 8.4E-07 45.2 6.5 63 272-335 9-86 (89)
10 1e91_A Paired amphipathic heli 95.3 0.058 2E-06 42.6 7.6 62 274-336 8-81 (85)
11 2dfs_A Myosin-5A; myosin-V, in 95.3 0.16 5.5E-06 55.7 13.3 24 98-121 1027-1050(1080)
12 2dfs_A Myosin-5A; myosin-V, in 95.2 0.023 8E-07 62.2 6.6 74 47-120 923-996 (1080)
13 3cvf_A Homer-3, homer protein 95.0 0.13 4.6E-06 40.7 8.8 73 48-120 2-74 (79)
14 2fxo_A Myosin heavy chain, car 94.8 0.54 1.8E-05 39.3 12.6 62 61-122 64-125 (129)
15 3bas_A Myosin heavy chain, str 94.2 0.73 2.5E-05 36.4 11.3 72 46-117 15-86 (89)
16 2f05_A Paired amphipathic heli 94.1 0.15 5.2E-06 42.0 7.3 63 274-337 8-82 (105)
17 3a7p_A Autophagy protein 16; c 94.1 0.31 1E-05 42.9 9.6 61 41-101 71-131 (152)
18 2b9c_A Striated-muscle alpha t 93.8 0.85 2.9E-05 39.4 11.9 76 40-115 47-122 (147)
19 3hnw_A Uncharacterized protein 93.5 0.6 2.1E-05 39.9 10.3 63 60-122 69-131 (138)
20 3i00_A HIP-I, huntingtin-inter 93.4 0.58 2E-05 39.4 9.8 61 43-106 20-80 (120)
21 2efr_A General control protein 93.3 2.2 7.4E-05 37.4 13.6 83 39-121 64-146 (155)
22 4emc_A Monopolin complex subun 93.2 0.25 8.4E-06 44.8 7.7 43 47-89 22-64 (190)
23 3oja_B Anopheles plasmodium-re 93.1 0.43 1.5E-05 47.1 10.0 69 66-134 509-584 (597)
24 2fxo_A Myosin heavy chain, car 93.0 2 6.7E-05 35.8 12.6 74 47-120 15-95 (129)
25 3na7_A HP0958; flagellar bioge 92.8 1.7 5.8E-05 39.6 12.9 51 44-94 31-81 (256)
26 2v4h_A NF-kappa-B essential mo 92.8 1.1 3.7E-05 37.6 10.5 35 87-121 76-110 (110)
27 1i84_S Smooth muscle myosin he 92.7 0.83 2.8E-05 50.1 12.5 77 46-122 858-941 (1184)
28 3oja_B Anopheles plasmodium-re 92.6 2.2 7.6E-05 42.0 14.4 46 77-122 506-551 (597)
29 4fm3_A Uncharacterized hypothe 92.5 1.3 4.6E-05 36.2 10.5 89 28-116 5-93 (98)
30 2v71_A Nuclear distribution pr 92.3 2.1 7.2E-05 38.6 12.5 73 61-133 51-134 (189)
31 3na7_A HP0958; flagellar bioge 91.6 2.5 8.7E-05 38.5 12.6 57 32-90 93-149 (256)
32 3a7o_A Autophagy protein 16; c 91.4 1.1 3.6E-05 35.1 8.3 61 46-113 12-72 (75)
33 2v66_B Nuclear distribution pr 91.3 3.6 0.00012 34.3 12.0 74 43-133 8-81 (111)
34 3vkg_A Dynein heavy chain, cyt 91.0 1.3 4.4E-05 53.9 12.4 87 45-131 2014-2132(3245)
35 3cve_A Homer protein homolog 1 90.6 3.6 0.00012 32.0 10.6 64 57-120 5-68 (72)
36 3m9b_A Proteasome-associated A 90.5 0.19 6.4E-06 47.3 3.9 69 44-120 23-94 (251)
37 2xnx_M M protein, M1-BC1; cell 90.4 0.57 1.9E-05 40.9 6.6 50 78-127 85-134 (146)
38 3tnu_B Keratin, type II cytosk 90.3 5.5 0.00019 33.0 12.4 40 52-91 36-75 (129)
39 1ic2_A Tropomyosin alpha chain 90.3 1.8 6.1E-05 33.4 8.8 48 44-91 19-66 (81)
40 3s4r_A Vimentin; alpha-helix, 90.0 4.9 0.00017 32.0 11.4 69 42-113 20-89 (93)
41 1cii_A Colicin IA; bacteriocin 89.8 2.1 7.1E-05 43.9 10.9 67 52-118 349-415 (602)
42 2jee_A YIIU; FTSZ, septum, coi 89.7 4.8 0.00016 32.0 10.8 68 47-114 8-75 (81)
43 2xdj_A Uncharacterized protein 89.5 1.9 6.4E-05 34.1 8.4 47 43-89 4-50 (83)
44 3nmd_A CGMP dependent protein 89.1 1.2 4.2E-05 34.7 6.9 37 47-83 21-57 (72)
45 1l8d_A DNA double-strand break 89.0 5.5 0.00019 31.5 11.0 38 48-85 6-43 (112)
46 2akf_A Coronin-1A; coiled coil 88.8 0.59 2E-05 31.0 4.2 30 47-83 1-30 (32)
47 3tnu_A Keratin, type I cytoske 88.7 5.5 0.00019 33.1 11.2 14 46-59 46-59 (131)
48 2e7s_A RAB guanine nucleotide 88.6 0.92 3.2E-05 39.1 6.4 50 26-76 4-56 (135)
49 1ic2_A Tropomyosin alpha chain 88.5 7.1 0.00024 30.0 11.2 58 42-99 3-60 (81)
50 1go4_E MAD1 (mitotic arrest de 88.3 2.4 8.4E-05 34.8 8.5 23 91-113 72-94 (100)
51 3o0z_A RHO-associated protein 88.2 7.7 0.00026 34.5 12.3 59 49-107 66-131 (168)
52 3s9g_A Protein hexim1; cyclin 87.5 2.3 8E-05 35.1 7.9 51 41-105 40-90 (104)
53 1gk4_A Vimentin; intermediate 87.5 8.5 0.00029 29.8 11.1 62 42-106 5-66 (84)
54 3mq7_A Bone marrow stromal ant 87.4 3.3 0.00011 35.1 8.9 54 54-110 55-108 (121)
55 1gd2_E Transcription factor PA 87.3 0.98 3.3E-05 34.8 5.3 44 62-119 25-68 (70)
56 4dci_A Uncharacterized protein 86.6 4.5 0.00015 35.3 9.7 69 64-132 27-101 (150)
57 2ocy_A RAB guanine nucleotide 86.6 16 0.00054 32.0 13.5 29 29-58 19-47 (154)
58 3ol1_A Vimentin; structural ge 86.6 9.1 0.00031 31.6 11.2 62 50-118 18-79 (119)
59 2v71_A Nuclear distribution pr 86.6 6.2 0.00021 35.6 10.9 67 44-110 62-132 (189)
60 3tnu_A Keratin, type I cytoske 86.4 13 0.00043 30.9 12.1 80 48-127 34-117 (131)
61 3nmd_A CGMP dependent protein 86.4 2.6 8.9E-05 32.8 7.2 38 54-91 21-58 (72)
62 2oqq_A Transcription factor HY 86.3 2.4 8.1E-05 30.0 6.2 36 69-111 6-41 (42)
63 3tnu_B Keratin, type II cytosk 86.1 13 0.00045 30.6 12.1 55 42-96 40-105 (129)
64 3etw_A Adhesin A; antiparallel 85.9 15 0.0005 31.0 13.0 85 40-124 4-105 (119)
65 3mov_A Lamin-B1; LMNB1, B-type 85.1 4.6 0.00016 32.5 8.5 55 48-102 15-73 (95)
66 2q6q_A Spindle POLE BODY compo 84.9 6.4 0.00022 30.6 8.7 57 55-118 6-62 (74)
67 2eqb_B RAB guanine nucleotide 84.0 6.8 0.00023 32.0 9.0 45 45-89 19-63 (97)
68 3k29_A Putative uncharacterize 83.9 19 0.00065 32.1 12.5 76 54-129 80-157 (169)
69 3jsv_C NF-kappa-B essential mo 83.3 10 0.00035 30.9 9.7 68 51-122 22-89 (94)
70 1m1j_B Fibrinogen beta chain; 82.2 24 0.00081 35.7 14.1 89 44-132 99-199 (464)
71 3o0z_A RHO-associated protein 82.2 27 0.00091 31.0 13.6 80 47-126 43-122 (168)
72 2qyw_A Vesicle transport throu 82.2 15 0.00052 29.4 10.4 81 41-121 11-98 (102)
73 1x79_B RAB GTPase binding effe 82.2 4.4 0.00015 33.9 7.4 88 47-137 8-102 (112)
74 4etp_A Kinesin-like protein KA 80.9 3.6 0.00012 40.3 7.5 32 45-76 3-34 (403)
75 4dyl_A Tyrosine-protein kinase 80.9 9.6 0.00033 36.8 10.4 93 38-136 302-394 (406)
76 2eqb_B RAB guanine nucleotide 80.8 22 0.00074 29.1 11.1 54 55-108 8-61 (97)
77 3u59_A Tropomyosin beta chain; 79.2 22 0.00075 28.2 11.7 40 72-111 22-61 (101)
78 3mq9_A Bone marrow stromal ant 78.9 32 0.0011 33.0 13.4 73 49-122 381-464 (471)
79 1lwu_C Fibrinogen gamma chain; 78.9 5 0.00017 38.7 7.6 49 43-91 3-51 (323)
80 4ghu_A TNF receptor-associated 78.8 2.4 8.4E-05 37.3 5.0 33 48-80 3-35 (198)
81 1l8d_A DNA double-strand break 78.4 23 0.00078 27.9 10.9 34 46-79 11-44 (112)
82 2v66_B Nuclear distribution pr 78.1 28 0.00097 28.9 12.3 60 45-104 35-101 (111)
83 4etp_A Kinesin-like protein KA 77.9 2.7 9.3E-05 41.2 5.6 54 53-113 4-57 (403)
84 3swy_A Cyclic nucleotide-gated 77.8 11 0.00037 27.0 7.2 43 70-122 2-44 (46)
85 3oja_A Leucine-rich immune mol 77.6 13 0.00044 36.0 10.2 34 89-122 416-449 (487)
86 2xdj_A Uncharacterized protein 77.5 18 0.00061 28.5 9.1 36 41-76 23-58 (83)
87 1x8y_A Lamin A/C; structural p 77.4 14 0.00047 28.9 8.5 60 44-106 9-68 (86)
88 1yf2_A Type I restriction-modi 77.1 3.7 0.00013 37.5 5.9 39 93-131 378-416 (425)
89 3vkg_A Dynein heavy chain, cyt 76.5 26 0.00088 43.1 14.1 11 126-136 2077-2087(3245)
90 2jee_A YIIU; FTSZ, septum, coi 76.1 21 0.00071 28.3 9.1 53 69-121 9-61 (81)
91 2ocy_A RAB guanine nucleotide 75.7 25 0.00084 30.8 10.4 18 45-62 13-30 (154)
92 1yf2_A Type I restriction-modi 75.4 4.3 0.00015 37.0 5.9 39 93-131 168-206 (425)
93 3qh9_A Liprin-beta-2; coiled-c 74.8 5 0.00017 31.9 5.2 23 53-75 55-77 (81)
94 3q8t_A Beclin-1; autophagy, AT 73.8 32 0.0011 27.4 12.2 24 97-120 70-93 (96)
95 3efg_A Protein SLYX homolog; x 73.4 14 0.00047 28.7 7.4 32 104-135 31-62 (78)
96 3m91_A Proteasome-associated A 72.5 13 0.00044 27.0 6.6 40 59-98 9-48 (51)
97 2lw1_A ABC transporter ATP-bin 72.4 9.1 0.00031 29.8 6.3 47 43-89 27-79 (89)
98 3he5_A Synzip1; heterodimeric 71.9 8.2 0.00028 27.5 5.2 36 45-80 10-45 (49)
99 3u06_A Protein claret segregat 71.8 10 0.00036 37.3 8.0 29 48-76 6-34 (412)
100 3swf_A CGMP-gated cation chann 71.6 16 0.00054 28.6 7.3 51 69-129 3-53 (74)
101 1x8y_A Lamin A/C; structural p 71.0 18 0.0006 28.3 7.6 63 52-114 3-69 (86)
102 4aj5_1 SKA3, spindle and kinet 70.5 38 0.0013 27.9 9.7 69 48-123 16-96 (101)
103 3mtu_E Head morphogenesis prot 70.5 25 0.00085 27.7 8.2 50 62-114 26-75 (77)
104 1t2k_D Cyclic-AMP-dependent tr 69.6 16 0.00056 26.5 6.7 23 99-121 34-56 (61)
105 1ydx_A Type I restriction enzy 69.6 6.9 0.00024 36.3 5.9 40 92-131 353-392 (406)
106 4b6x_A AVRRPS4, avirulence pro 69.6 42 0.0014 26.9 9.7 60 55-114 25-89 (90)
107 3u1c_A Tropomyosin alpha-1 cha 69.4 42 0.0014 26.8 12.9 56 42-97 6-61 (101)
108 3oja_A Leucine-rich immune mol 69.3 57 0.0019 31.4 12.5 47 68-114 423-469 (487)
109 3q8t_A Beclin-1; autophagy, AT 68.4 43 0.0015 26.6 12.8 69 49-117 8-76 (96)
110 2efr_A General control protein 68.1 32 0.0011 30.0 9.4 35 78-112 26-60 (155)
111 4afl_A P29ING4, inhibitor of g 67.8 43 0.0015 26.3 11.1 78 44-121 10-100 (104)
112 2wt7_A Proto-oncogene protein 67.8 13 0.00043 27.4 5.8 26 98-123 34-59 (63)
113 2w6a_A ARF GTPase-activating p 67.7 22 0.00074 27.0 7.0 41 75-122 15-55 (63)
114 2gkw_A TNF receptor-associated 67.3 7.6 0.00026 33.6 5.3 34 47-80 2-35 (192)
115 3htk_A Structural maintenance 67.1 31 0.0011 24.5 8.0 18 74-91 20-37 (60)
116 1ydx_A Type I restriction enzy 67.0 8.5 0.00029 35.7 5.9 39 93-131 166-204 (406)
117 1zhc_A Hypothetical protein HP 65.9 11 0.00038 28.9 5.4 65 56-121 7-71 (76)
118 2oqq_A Transcription factor HY 65.1 23 0.00077 25.0 6.3 28 59-86 10-37 (42)
119 2k48_A Nucleoprotein; viral pr 65.0 33 0.0011 28.5 8.3 30 67-96 36-65 (107)
120 3bas_A Myosin heavy chain, str 64.3 49 0.0017 25.8 10.0 60 60-126 15-74 (89)
121 1ztm_A Fusion glycoprotein; fu 64.3 20 0.00069 36.6 8.4 77 32-121 102-180 (490)
122 3m0d_C TNF receptor-associated 63.9 24 0.00082 26.2 6.8 48 33-81 16-63 (65)
123 1ik9_A DNA repair protein XRCC 63.6 85 0.0029 28.3 12.6 72 47-134 134-205 (213)
124 1t2k_D Cyclic-AMP-dependent tr 63.1 18 0.00061 26.3 5.8 39 63-108 19-57 (61)
125 2hy6_A General control protein 63.0 8.4 0.00029 26.1 3.6 28 88-115 2-29 (34)
126 1x79_B RAB GTPase binding effe 62.9 32 0.0011 28.7 8.0 58 62-119 41-102 (112)
127 3u06_A Protein claret segregat 62.8 22 0.00076 34.9 8.2 37 53-89 4-40 (412)
128 3efg_A Protein SLYX homolog; x 62.7 14 0.00047 28.7 5.4 49 66-121 14-62 (78)
129 2lw1_A ABC transporter ATP-bin 62.7 46 0.0016 25.7 8.5 25 60-84 23-47 (89)
130 3he4_A Synzip6; heterodimeric 62.5 8.7 0.0003 28.0 3.9 26 93-118 30-55 (56)
131 1hjb_A Ccaat/enhancer binding 62.5 18 0.00062 28.8 6.1 27 36-62 34-60 (87)
132 4fla_A Regulation of nuclear P 62.1 57 0.002 28.1 9.8 57 52-119 86-142 (152)
133 2q13_A DCC-interacting protein 61.9 34 0.0012 32.2 9.1 83 45-131 21-107 (385)
134 2avr_X Adhesion A; antiparalle 61.9 72 0.0025 26.9 12.0 25 42-66 6-30 (119)
135 3swk_A Vimentin; cytoskeleton, 61.9 55 0.0019 25.5 9.5 18 103-120 44-61 (86)
136 3m9b_A Proteasome-associated A 61.7 6.9 0.00024 36.8 4.2 37 86-122 53-89 (251)
137 3m0a_A TNF receptor-associated 61.2 36 0.0012 24.8 7.3 35 45-79 26-60 (66)
138 3m91_A Proteasome-associated A 60.7 32 0.0011 24.9 6.7 25 96-120 25-49 (51)
139 3ghg_A Fibrinogen alpha chain; 60.6 60 0.002 33.7 11.0 17 120-136 178-194 (562)
140 4h8s_A DCC-interacting protein 60.3 36 0.0012 32.3 9.0 19 45-63 44-62 (407)
141 2xzr_A Immunoglobulin-binding 60.1 73 0.0025 26.3 13.1 73 41-113 16-88 (114)
142 2fcw_A Alpha-2-macroglobulin r 60.0 74 0.0025 26.5 11.9 75 51-129 23-103 (109)
143 4dk0_A Putative MACA; alpha-ha 59.9 27 0.00092 32.1 7.8 14 48-61 73-86 (369)
144 1ci6_A Transcription factor AT 59.7 22 0.00075 26.3 5.8 24 97-120 33-56 (63)
145 2no2_A HIP-I, huntingtin-inter 59.3 71 0.0024 26.0 13.0 13 116-128 90-102 (107)
146 3htk_A Structural maintenance 59.1 45 0.0015 23.6 8.8 35 67-101 20-54 (60)
147 3qne_A Seryl-tRNA synthetase, 58.0 33 0.0011 34.7 8.6 39 94-132 71-109 (485)
148 2dnx_A Syntaxin-12; snare, HAB 57.3 80 0.0027 26.0 12.5 90 32-121 13-118 (130)
149 2r2v_A GCN4 leucine zipper; co 57.2 12 0.0004 25.4 3.5 28 88-115 2-29 (34)
150 2akf_A Coronin-1A; coiled coil 57.1 14 0.00049 24.4 3.8 25 98-122 3-27 (32)
151 2xv5_A Lamin-A/C; structural p 56.9 38 0.0013 26.1 6.9 35 66-100 5-39 (74)
152 2ic6_A Nucleocapsid protein; h 56.8 64 0.0022 25.4 8.3 30 67-96 6-35 (78)
153 2yko_A LINE-1 ORF1P; RNA-bindi 56.8 22 0.00076 33.0 6.6 50 42-91 3-52 (233)
154 4fi5_A Nucleoprotein; structur 56.5 56 0.0019 27.4 8.3 59 67-131 23-89 (113)
155 1m1j_B Fibrinogen beta chain; 56.4 1.2E+02 0.0042 30.5 12.4 67 56-122 125-196 (464)
156 3mov_A Lamin-B1; LMNB1, B-type 56.3 25 0.00084 28.2 6.0 23 67-89 13-35 (95)
157 1kd8_A GABH AIV, GCN4 acid bas 56.0 12 0.0004 25.7 3.4 31 88-118 2-32 (36)
158 1d7m_A Cortexillin I; coiled-c 55.7 72 0.0025 26.0 8.6 42 37-78 17-58 (101)
159 3viq_B Mating-type switching p 55.2 37 0.0013 27.1 6.8 52 69-120 11-67 (85)
160 1jnm_A Proto-oncogene C-JUN; B 55.2 18 0.00061 26.4 4.7 22 99-120 34-55 (62)
161 2e7s_A RAB guanine nucleotide 54.9 57 0.0019 28.0 8.4 48 42-89 36-83 (135)
162 2ic9_A Nucleocapsid protein; h 54.7 66 0.0023 26.2 8.3 59 68-132 7-73 (96)
163 2yy0_A C-MYC-binding protein; 54.6 24 0.00083 25.5 5.2 32 52-90 19-50 (53)
164 1fmh_A General control protein 54.6 19 0.00066 23.7 4.2 28 54-81 3-30 (33)
165 1gd2_E Transcription factor PA 54.5 21 0.00073 27.3 5.1 38 45-82 29-66 (70)
166 1ci6_A Transcription factor AT 54.4 42 0.0014 24.7 6.6 37 63-106 20-56 (63)
167 2i1j_A Moesin; FERM, coiled-co 54.3 6.9 0.00024 40.0 3.1 62 68-129 337-398 (575)
168 1zxa_A CGMP-dependent protein 54.2 17 0.00059 27.8 4.5 26 54-79 27-52 (67)
169 3c3f_A Alpha/beta peptide with 54.0 14 0.00049 25.0 3.5 27 88-114 2-28 (34)
170 1ez3_A Syntaxin-1A; three heli 53.8 58 0.002 25.7 8.0 29 99-127 48-77 (127)
171 2w83_C C-JUN-amino-terminal ki 53.5 29 0.001 27.3 5.8 49 35-83 27-75 (77)
172 2zdi_C Prefoldin subunit alpha 53.3 79 0.0027 26.3 9.0 37 97-133 101-137 (151)
173 2b5u_A Colicin E3; high resolu 53.2 62 0.0021 33.4 9.7 43 45-87 314-356 (551)
174 3kqg_A Langerin, C-type lectin 52.8 15 0.0005 30.5 4.4 33 48-84 2-34 (182)
175 3ghg_A Fibrinogen alpha chain; 52.5 37 0.0013 35.2 7.9 19 104-122 134-152 (562)
176 4fla_A Regulation of nuclear P 52.4 1.1E+02 0.0039 26.2 12.7 34 68-101 70-103 (152)
177 1no4_A Late, head morphogenesi 52.1 77 0.0026 25.4 8.1 50 62-118 22-71 (97)
178 1jcd_A Major outer membrane li 52.0 66 0.0022 23.4 7.3 44 46-89 5-48 (52)
179 1gk4_A Vimentin; intermediate 51.8 79 0.0027 24.3 10.0 20 89-108 42-61 (84)
180 3m48_A General control protein 51.6 17 0.00058 24.5 3.6 27 88-114 1-27 (33)
181 3fpp_A Macrolide-specific effl 51.5 46 0.0016 30.2 7.9 13 49-61 73-85 (341)
182 1gu4_A CAAT/enhancer binding p 51.3 19 0.00064 28.1 4.4 28 36-63 34-61 (78)
183 1ykh_B RNA polymerase II holoe 51.3 56 0.0019 27.4 7.7 73 30-106 53-125 (132)
184 3rrk_A V-type ATPase 116 kDa s 51.0 64 0.0022 29.9 8.9 53 66-125 226-279 (357)
185 3oa7_A Head morphogenesis prot 50.9 26 0.0009 32.0 5.9 56 62-124 26-81 (206)
186 1yke_B RNA polymerase II holoe 50.7 46 0.0016 28.6 7.3 69 30-102 53-121 (151)
187 2dgc_A Protein (GCN4); basic d 50.6 27 0.00091 25.9 5.0 18 62-79 26-43 (63)
188 2dq0_A Seryl-tRNA synthetase; 50.6 55 0.0019 32.5 8.8 40 94-133 69-108 (455)
189 3bbp_D GRIP and coiled-coil do 50.6 13 0.00044 28.9 3.3 49 70-118 19-67 (71)
190 3s9g_A Protein hexim1; cyclin 50.6 98 0.0033 25.5 8.7 49 81-129 38-86 (104)
191 2oxj_A Hybrid alpha/beta pepti 50.2 18 0.00061 24.5 3.5 27 88-114 2-28 (34)
192 1hjb_A Ccaat/enhancer binding 49.9 39 0.0013 26.8 6.2 28 94-121 43-70 (87)
193 1kd8_B GABH BLL, GCN4 acid bas 49.8 31 0.0011 23.6 4.7 28 46-73 2-29 (36)
194 1f5n_A Interferon-induced guan 49.8 1E+02 0.0035 31.7 10.9 38 82-121 543-580 (592)
195 1wle_A Seryl-tRNA synthetase; 49.8 1.3E+02 0.0045 30.3 11.5 39 95-133 117-155 (501)
196 2xnx_M M protein, M1-BC1; cell 49.8 1.3E+02 0.0045 26.2 10.3 23 99-121 85-107 (146)
197 2dq0_A Seryl-tRNA synthetase; 49.6 49 0.0017 32.8 8.2 36 102-137 70-105 (455)
198 1s94_A S-syntaxin; three helix 49.4 68 0.0023 27.2 8.1 65 52-127 43-108 (180)
199 3haj_A Human pacsin2 F-BAR; pa 49.2 1.5E+02 0.0051 29.1 11.6 30 50-79 134-163 (486)
200 3kpe_A Fusion glycoprotein F0; 49.2 67 0.0023 23.4 6.8 42 49-90 1-42 (51)
201 3c3g_A Alpha/beta peptide with 49.1 19 0.00065 24.2 3.5 27 88-114 1-27 (33)
202 2c5k_T Syntaxin TLG1, T-snare 49.1 68 0.0023 25.5 7.5 28 66-93 36-63 (95)
203 1jnm_A Proto-oncogene C-JUN; B 49.0 33 0.0011 24.9 5.3 29 63-91 19-47 (62)
204 3ghg_C Fibrinogen gamma chain; 48.6 48 0.0016 33.0 7.9 75 44-118 37-115 (411)
205 3c9i_A Tail needle protein GP2 48.2 1.5E+02 0.0051 27.5 10.5 76 21-98 28-109 (242)
206 1ca9_A TRAF2, protein (TNF rec 47.8 25 0.00085 30.0 5.1 33 47-79 5-37 (192)
207 1pul_A Hypothetical protein C3 47.8 20 0.00069 30.3 4.4 40 277-316 69-112 (125)
208 1deb_A APC protein, adenomatou 47.7 67 0.0023 23.6 6.5 34 45-78 10-43 (54)
209 1vcs_A Vesicle transport throu 47.6 68 0.0023 25.5 7.4 55 62-122 34-88 (102)
210 2q12_A DIP13 alpha, DCC-intera 47.6 1.3E+02 0.0045 26.6 10.1 85 45-133 21-109 (265)
211 1deq_A Fibrinogen (alpha chain 47.3 1.3E+02 0.0045 29.9 10.6 17 41-57 63-79 (390)
212 3e98_A GAF domain of unknown f 47.1 63 0.0022 29.5 8.0 40 97-136 92-134 (252)
213 1joc_A EEA1, early endosomal a 47.1 99 0.0034 25.4 8.5 24 42-65 8-31 (125)
214 3s4r_A Vimentin; alpha-helix, 46.4 63 0.0022 25.5 6.9 32 89-120 58-89 (93)
215 1ses_A Seryl-tRNA synthetase; 46.2 1.1E+02 0.0038 29.9 10.1 71 63-133 32-103 (421)
216 2bni_A General control protein 46.0 22 0.00075 24.1 3.5 27 88-114 2-28 (34)
217 4dac_A Computationally designe 45.9 15 0.00052 23.5 2.5 18 105-122 5-22 (28)
218 1fzc_C Fibrin; blood coagulati 45.9 17 0.00058 35.0 4.1 37 44-80 10-46 (319)
219 1uo4_A General control protein 45.8 24 0.00081 23.9 3.6 27 88-114 2-28 (34)
220 1zxa_A CGMP-dependent protein 45.1 35 0.0012 26.1 4.9 35 55-89 14-48 (67)
221 3m0d_C TNF receptor-associated 44.9 91 0.0031 23.0 9.4 17 64-80 4-20 (65)
222 3gp4_A Transcriptional regulat 44.8 1.2E+02 0.004 25.1 8.7 13 29-41 43-55 (142)
223 2aze_B Transcription factor E2 44.7 32 0.0011 28.0 5.0 29 44-72 5-33 (106)
224 1m1j_C Fibrinogen gamma chain; 44.6 2.4E+02 0.0083 27.8 12.2 31 43-73 36-66 (409)
225 2xus_A Breast cancer metastasi 44.5 29 0.001 25.1 4.2 32 46-86 14-45 (49)
226 3qh9_A Liprin-beta-2; coiled-c 44.2 1.2E+02 0.004 24.1 8.5 35 67-101 27-61 (81)
227 1nkp_B MAX protein, MYC proto- 44.0 37 0.0013 25.7 5.1 10 19-28 23-32 (83)
228 3okg_A Restriction endonucleas 43.9 36 0.0012 31.1 5.9 18 113-130 194-211 (412)
229 3ghg_B Fibrinogen beta chain; 43.4 2.2E+02 0.0074 28.9 11.8 89 43-131 93-193 (461)
230 3swk_A Vimentin; cytoskeleton, 43.3 40 0.0014 26.3 5.2 31 50-80 47-77 (86)
231 3mq9_A Bone marrow stromal ant 43.1 2.3E+02 0.0077 27.0 13.1 21 70-90 394-414 (471)
232 1kd8_A GABH AIV, GCN4 acid bas 43.0 46 0.0016 22.8 4.7 12 46-57 2-13 (36)
233 3ibp_A Chromosome partition pr 42.8 2.3E+02 0.0078 27.3 11.3 23 97-119 79-101 (302)
234 3okg_A Restriction endonucleas 42.4 39 0.0013 30.8 5.9 39 93-131 365-407 (412)
235 1x4t_A Hypothetical protein LO 42.4 68 0.0023 26.0 6.5 43 65-114 31-79 (92)
236 2yy0_A C-MYC-binding protein; 42.2 19 0.00065 26.1 3.0 32 45-76 19-50 (53)
237 1vcs_A Vesicle transport throu 42.2 1.3E+02 0.0043 23.9 8.2 27 59-85 38-64 (102)
238 1cii_A Colicin IA; bacteriocin 41.6 3.2E+02 0.011 28.3 12.8 46 54-99 358-403 (602)
239 1f5n_A Interferon-induced guan 41.5 70 0.0024 32.9 8.1 29 60-88 481-509 (592)
240 4emc_A Monopolin complex subun 41.4 74 0.0025 28.8 7.3 68 56-130 10-80 (190)
241 2wq1_A General control protein 41.3 30 0.001 23.3 3.5 27 88-114 1-27 (33)
242 1gk6_A Vimentin; intermediate 41.1 92 0.0031 22.6 6.6 27 69-95 3-29 (59)
243 2p22_A Suppressor protein STP2 41.0 1E+02 0.0035 27.3 8.1 32 272-305 141-172 (174)
244 2no2_A HIP-I, huntingtin-inter 40.7 1.5E+02 0.005 24.1 13.7 14 63-76 26-39 (107)
245 1m1j_A Fibrinogen alpha subuni 40.5 3.1E+02 0.011 28.0 12.3 14 121-134 180-193 (491)
246 1wlo_A SUFE protein; structura 40.3 20 0.00068 30.3 3.3 46 13-63 87-132 (136)
247 1t6f_A Geminin; coiled-coil, c 40.2 46 0.0016 22.8 4.4 26 53-78 8-33 (37)
248 1wlm_A Protein CGI-38; structu 40.2 18 0.00061 31.3 3.0 36 285-320 75-110 (151)
249 2jrf_A Tubulin polymerization- 39.4 25 0.00087 31.5 4.0 35 285-319 68-102 (184)
250 1lrz_A FEMA, factor essential 39.3 86 0.0029 30.0 8.0 52 66-118 247-298 (426)
251 1gk6_A Vimentin; intermediate 39.3 82 0.0028 22.8 6.1 39 43-81 5-43 (59)
252 3lss_A Seryl-tRNA synthetase; 39.2 1.9E+02 0.0065 29.1 10.7 89 44-133 36-143 (484)
253 3m48_A General control protein 39.0 39 0.0013 22.7 3.8 13 46-58 1-13 (33)
254 2d4y_A HAP1, flagellar HOOK-as 39.0 1.5E+02 0.005 28.9 9.7 69 41-112 74-147 (463)
255 3he4_A Synzip6; heterodimeric 39.0 39 0.0013 24.5 4.2 26 97-122 27-52 (56)
256 1wt6_A Myotonin-protein kinase 38.9 1.4E+02 0.0049 23.6 8.8 55 48-106 17-71 (81)
257 1nlw_A MAD protein, MAX dimeri 38.3 61 0.0021 24.9 5.5 35 84-118 44-78 (80)
258 1zme_C Proline utilization tra 37.3 36 0.0012 24.2 3.9 21 68-88 46-66 (70)
259 1kd8_B GABH BLL, GCN4 acid bas 37.3 47 0.0016 22.7 4.1 28 88-115 2-29 (36)
260 1ni7_A ER75, hypothetical prot 37.2 5.6 0.00019 34.6 -0.7 52 13-68 100-151 (155)
261 3lss_A Seryl-tRNA synthetase; 37.2 41 0.0014 34.0 5.5 34 103-136 101-139 (484)
262 1t6f_A Geminin; coiled-coil, c 37.1 54 0.0018 22.5 4.3 12 91-102 4-15 (37)
263 4gkw_A Spindle assembly abnorm 36.8 2.1E+02 0.0072 24.9 11.4 17 47-63 13-29 (167)
264 2v0o_A FCHO2, FCH domain only 36.8 2.1E+02 0.0073 24.9 14.6 35 100-134 173-207 (276)
265 1uix_A RHO-associated kinase; 36.8 1.4E+02 0.0049 22.9 9.5 32 71-102 2-33 (71)
266 2dq3_A Seryl-tRNA synthetase; 36.7 35 0.0012 33.5 4.8 74 60-133 31-107 (425)
267 1bg1_A Protein (transcription 36.7 1.2E+02 0.0041 31.6 9.0 44 43-86 11-54 (596)
268 2cly_A ATP synthase B chain, m 36.6 2.3E+02 0.0077 25.8 9.8 76 50-125 82-166 (214)
269 4hpq_C ATG17, KLTH0D15642P; au 36.6 2.2E+02 0.0077 28.2 10.6 75 57-131 240-321 (413)
270 1d7m_A Cortexillin I; coiled-c 36.5 1.7E+02 0.0059 23.8 13.2 22 68-89 34-55 (101)
271 3mud_A DNA repair protein XRCC 36.2 1.4E+02 0.0047 26.6 8.1 24 57-80 126-149 (175)
272 2i1j_A Moesin; FERM, coiled-co 35.6 33 0.0011 35.0 4.6 38 284-321 504-550 (575)
273 1gu4_A CAAT/enhancer binding p 35.5 62 0.0021 25.1 5.1 25 97-121 46-70 (78)
274 1nfn_A Apolipoprotein E3; lipi 35.3 1E+02 0.0036 27.0 7.3 54 79-132 105-164 (191)
275 2lyc_A Spindle and kinetochore 34.9 11 0.00037 32.1 0.8 19 282-300 21-39 (130)
276 4ani_A Protein GRPE; chaperone 34.7 1.2E+02 0.0039 27.7 7.6 35 57-91 64-98 (213)
277 1fxk_C Protein (prefoldin); ar 34.4 89 0.003 25.2 6.2 36 43-78 93-128 (133)
278 3v1a_A Computational design, M 34.3 54 0.0018 23.6 4.2 28 277-304 14-41 (48)
279 1zme_C Proline utilization tra 34.3 14 0.00047 26.4 1.2 22 42-63 48-69 (70)
280 3rkg_A Magnesium transporter M 34.0 1E+02 0.0034 28.7 7.2 75 36-136 125-199 (261)
281 3qne_A Seryl-tRNA synthetase, 33.9 2.8E+02 0.0094 28.0 10.9 34 103-136 73-106 (485)
282 2y7c_A Type-1 restriction enzy 33.8 65 0.0022 29.7 5.9 21 111-131 184-204 (464)
283 2vrs_A Sigma-C capsid protein; 33.7 48 0.0016 30.5 4.8 37 44-80 3-39 (211)
284 3mud_A DNA repair protein XRCC 33.7 1.5E+02 0.005 26.5 7.9 48 33-84 124-171 (175)
285 3ra3_B P2F; coiled coil domain 33.6 34 0.0012 21.9 2.7 26 54-79 2-27 (28)
286 3he5_B Synzip2; heterodimeric 33.4 1.3E+02 0.0044 21.5 6.0 28 95-122 18-45 (52)
287 1pcf_A P15, transcriptional co 33.1 26 0.00088 26.6 2.5 19 286-304 43-61 (66)
288 1joc_A EEA1, early endosomal a 33.0 2E+02 0.0069 23.5 9.0 37 53-89 5-41 (125)
289 4b4t_K 26S protease regulatory 33.0 66 0.0022 31.7 6.1 24 99-122 61-84 (428)
290 3cvf_A Homer-3, homer protein 32.9 1.8E+02 0.006 22.8 9.8 58 67-127 14-71 (79)
291 2oto_A M protein; helical coil 32.8 2.2E+02 0.0074 23.8 12.8 52 42-93 26-77 (155)
292 2wt7_A Proto-oncogene protein 32.8 1.4E+02 0.0048 21.7 9.6 41 63-110 20-60 (63)
293 2x3v_A Syndapin I, protein kin 32.7 2.8E+02 0.0097 25.1 10.9 12 119-130 238-249 (337)
294 1dh3_A Transcription factor CR 32.6 1.4E+02 0.0047 21.4 7.2 16 64-79 20-35 (55)
295 1a92_A Delta antigen; leucine 32.6 86 0.0029 22.8 5.0 26 71-96 12-37 (50)
296 3rrr_B Fusion glycoprotein F0; 32.3 2.3E+02 0.008 27.9 9.8 63 45-120 9-71 (374)
297 1wle_A Seryl-tRNA synthetase; 32.1 2.4E+02 0.0082 28.4 10.1 36 102-137 117-152 (501)
298 1uii_A Geminin; human, DNA rep 32.1 1.1E+02 0.0039 24.2 6.2 16 91-106 43-58 (83)
299 2dgc_A Protein (GCN4); basic d 31.8 75 0.0025 23.5 4.9 13 47-59 32-44 (63)
300 2xv5_A Lamin-A/C; structural p 31.7 1.4E+02 0.0049 22.8 6.6 25 50-74 3-27 (74)
301 1fzc_C Fibrin; blood coagulati 31.4 35 0.0012 32.8 3.7 33 46-78 5-37 (319)
302 2wq1_A General control protein 31.2 68 0.0023 21.5 4.0 13 46-58 1-13 (33)
303 2wvr_A Geminin; DNA replicatio 30.9 2.8E+02 0.0097 25.3 9.4 54 58-115 107-160 (209)
304 1ytz_T Troponin T; muscle, THI 30.6 78 0.0027 26.0 5.2 36 43-78 54-89 (107)
305 2wuj_A Septum site-determining 30.6 61 0.0021 23.4 4.1 31 86-116 26-56 (57)
306 2rr9_C Putative uncharacterize 30.5 1.1E+02 0.0037 21.8 5.1 8 30-37 5-12 (46)
307 1g5g_A Fusion protein; NDV, pa 30.3 53 0.0018 33.5 5.0 75 32-119 96-172 (481)
308 3ni0_A Bone marrow stromal ant 30.2 1.9E+02 0.0064 23.7 7.3 14 106-119 72-85 (99)
309 1y1u_A Signal transducer and a 30.0 3.4E+02 0.012 28.1 11.0 49 38-86 5-53 (585)
310 1u00_A HSC66, chaperone protei 30.0 2.8E+02 0.0097 24.4 9.3 28 62-89 132-159 (227)
311 3pwx_A Putative flagellar HOOK 29.7 3E+02 0.01 24.5 10.4 68 42-113 8-81 (239)
312 2ve7_A Kinetochore protein HEC 29.6 62 0.0021 30.5 5.1 52 34-85 146-204 (315)
313 3rki_A Fusion glycoprotein F0; 29.5 1E+02 0.0035 31.7 6.8 54 38-91 139-192 (528)
314 1hci_A Alpha-actinin 2; triple 29.5 1.5E+02 0.0052 27.9 7.8 36 290-325 406-441 (476)
315 3a5t_A Transcription factor MA 29.1 8.3 0.00028 31.9 -0.9 99 13-126 5-104 (107)
316 1nkp_B MAX protein, MYC proto- 29.1 80 0.0028 23.8 4.8 17 99-115 52-68 (83)
317 2w6b_A RHO guanine nucleotide 29.1 1.7E+02 0.0057 21.7 6.2 13 67-79 11-23 (56)
318 3m0a_A TNF receptor-associated 28.8 1.6E+02 0.0056 21.1 9.3 42 50-91 3-44 (66)
319 2j5u_A MREC protein; bacterial 28.8 33 0.0011 31.4 3.0 35 91-125 23-57 (255)
320 4i0x_B ESAT-6-like protein MAB 28.7 2E+02 0.0067 22.0 9.7 53 42-94 15-70 (103)
321 1wlq_A Geminin; coiled-coil; 2 28.3 1.3E+02 0.0043 24.0 5.9 53 57-113 29-81 (83)
322 2y7c_A Type-1 restriction enzy 28.3 89 0.0031 28.8 5.9 20 112-131 398-417 (464)
323 3i00_A HIP-I, huntingtin-inter 28.1 2.6E+02 0.0088 23.2 10.4 57 48-107 18-74 (120)
324 2kho_A Heat shock protein 70; 28.0 2.1E+02 0.0072 28.8 9.0 39 52-90 510-551 (605)
325 1fio_A SSO1 protein; four heli 28.0 2.7E+02 0.0091 23.4 10.7 15 306-320 164-178 (196)
326 2dq3_A Seryl-tRNA synthetase; 27.9 74 0.0025 31.1 5.5 30 105-134 72-101 (425)
327 2zdi_C Prefoldin subunit alpha 27.1 70 0.0024 26.6 4.5 37 43-79 103-139 (151)
328 2aze_A Transcription factor DP 27.0 1.9E+02 0.0064 25.3 7.3 35 45-79 5-39 (155)
329 1urq_A M-tomosyn isoform; tran 26.8 1.9E+02 0.0066 21.3 6.4 37 43-79 9-45 (63)
330 2yo3_A General control protein 26.6 1.3E+02 0.0044 28.5 6.6 40 45-84 216-255 (268)
331 1pl5_A Regulatory protein SIR4 26.5 73 0.0025 26.9 4.4 62 13-74 54-131 (142)
332 2efk_A CDC42-interacting prote 26.4 3.3E+02 0.011 23.9 12.2 8 126-133 209-216 (301)
333 2pms_C Pneumococcal surface pr 26.3 1.1E+02 0.0036 26.0 5.4 26 97-122 64-89 (125)
334 1gmj_A ATPase inhibitor; coile 26.2 2.5E+02 0.0084 22.3 9.1 16 38-53 17-32 (84)
335 2zvf_A Alanyl-tRNA synthetase; 26.1 1.6E+02 0.0056 24.3 6.6 25 97-121 35-59 (171)
336 2er8_A Regulatory protein Leu3 26.0 36 0.0012 24.4 2.2 15 68-82 51-65 (72)
337 1uo4_A General control protein 25.9 91 0.0031 21.1 3.9 12 46-57 2-13 (34)
338 3u0c_A Invasin IPAB, 62 kDa an 25.8 3.7E+02 0.013 24.2 11.0 46 46-91 69-114 (201)
339 3d5a_X RF1, peptide chain rele 25.7 4.2E+02 0.014 25.8 10.2 25 106-130 74-99 (354)
340 1sed_A APC1180, hypothetical p 25.7 1.1E+02 0.0038 25.7 5.3 57 275-340 27-86 (117)
341 1p9i_A Cortexillin I/GCN4 hybr 25.7 41 0.0014 21.9 2.1 28 290-317 2-30 (31)
342 1j1d_B Troponin T, TNT; THIN f 25.4 81 0.0028 25.8 4.4 43 49-91 46-88 (106)
343 3k29_A Putative uncharacterize 25.2 3.6E+02 0.012 23.9 15.8 102 24-125 2-130 (169)
344 1z0k_B FYVE-finger-containing 25.2 86 0.0029 24.1 4.2 30 276-305 32-61 (69)
345 1ses_A Seryl-tRNA synthetase; 25.1 4.5E+02 0.015 25.6 10.5 63 74-136 29-99 (421)
346 3a1q_C Ubiquitin interaction m 24.9 1.6E+02 0.0054 20.8 5.1 14 43-56 12-25 (45)
347 2d4x_A Flagellar HOOK-associat 24.9 3.5E+02 0.012 23.7 9.8 49 43-95 7-55 (248)
348 2bzb_A Conserved domain protei 24.8 60 0.002 24.2 3.2 51 71-121 6-56 (62)
349 3kz3_A Repressor protein CI; f 24.6 1.6E+02 0.0056 20.8 5.6 58 277-334 14-78 (80)
350 2inr_A DNA topoisomerase 4 sub 24.6 5.8E+02 0.02 26.1 12.1 43 92-134 452-494 (514)
351 1lrz_A FEMA, factor essential 24.5 1.4E+02 0.005 28.4 6.8 15 68-82 256-270 (426)
352 3mtu_A Tropomyosin alpha-1 cha 24.5 1.6E+02 0.0056 22.3 5.8 12 42-53 6-17 (75)
353 2xcs_B DNA gyrase subunit B, D 24.4 6.6E+02 0.022 26.7 12.5 43 92-134 635-677 (692)
354 3kin_B Kinesin heavy chain; mo 24.2 1.2E+02 0.0041 24.7 5.3 51 34-84 56-114 (117)
355 3tq2_A KE1; parallel three hel 24.2 1.6E+02 0.0055 19.7 4.9 30 47-76 3-32 (36)
356 1avy_A Fibritin, gpwac M; bact 24.1 1.3E+02 0.0046 23.4 5.1 36 44-79 7-42 (74)
357 1nyh_A Regulatory protein SIR4 24.0 87 0.003 27.0 4.5 62 13-74 78-155 (166)
358 3plt_A Sphingolipid long chain 23.9 4.3E+02 0.015 24.4 13.9 57 43-99 67-123 (234)
359 3ter_A Mammalian stromal inter 23.6 1.2E+02 0.004 26.1 5.2 37 79-115 51-87 (136)
360 3g0m_A Cysteine desulfuration 23.4 19 0.00064 30.6 0.3 45 14-62 94-138 (141)
361 1ez3_A Syntaxin-1A; three heli 23.4 2.7E+02 0.0091 21.8 9.1 20 43-62 10-29 (127)
362 3onj_A T-snare VTI1; helix, HA 23.3 2.7E+02 0.0092 21.7 11.9 46 77-122 38-87 (97)
363 3sjb_C Golgi to ER traffic pro 23.2 2.6E+02 0.0089 22.6 6.9 62 43-114 21-87 (93)
364 1hwt_C Protein (heme activator 23.1 32 0.0011 25.2 1.4 22 64-85 56-77 (81)
365 3c3f_A Alpha/beta peptide with 22.9 1.2E+02 0.004 20.5 4.0 12 46-57 2-13 (34)
366 3viq_A SWI5-dependent recombin 22.9 93 0.0032 26.0 4.4 23 70-92 4-26 (122)
367 2pms_C Pneumococcal surface pr 22.8 1.2E+02 0.004 25.8 5.0 22 69-90 64-85 (125)
368 2gd5_A Charged multivesicular 22.4 3.6E+02 0.012 22.9 8.9 63 65-127 13-80 (179)
369 1j1d_B Troponin T, TNT; THIN f 22.4 3.2E+02 0.011 22.3 8.3 20 70-89 53-72 (106)
370 1s1c_X RHO-associated, coiled- 22.4 2.7E+02 0.0092 21.4 8.8 31 70-100 3-33 (71)
371 4ani_A Protein GRPE; chaperone 22.4 4.3E+02 0.015 23.8 10.8 32 44-75 65-96 (213)
372 4eba_G RNA15, KLLA0F09383P; HA 22.3 1E+02 0.0035 27.3 4.8 55 279-339 46-100 (174)
373 2ke4_A CDC42-interacting prote 22.2 2.4E+02 0.0083 22.5 6.6 26 46-71 16-41 (98)
374 4fqn_A Malcavernin; helical do 22.1 1.9E+02 0.0065 23.6 5.9 53 277-330 19-71 (98)
375 3frt_A Charged multivesicular 21.9 1.2E+02 0.0042 27.4 5.4 57 70-128 18-74 (218)
376 1yzm_A FYVE-finger-containing 21.8 1.2E+02 0.0041 22.0 4.2 29 277-305 15-43 (51)
377 2wg5_A General control protein 21.8 81 0.0028 25.4 3.8 6 49-54 11-16 (109)
378 1bf5_A Signal transducer and a 21.8 4.8E+02 0.016 27.1 10.3 40 47-86 4-43 (575)
379 3k8w_A Flagellin homolog; flag 21.7 5.5E+02 0.019 24.7 11.4 86 29-118 9-104 (326)
380 2w6a_A ARF GTPase-activating p 21.6 2.6E+02 0.0091 21.1 8.0 46 55-107 16-61 (63)
381 2d4y_A HAP1, flagellar HOOK-as 21.4 2.7E+02 0.0094 27.0 8.1 70 56-132 64-146 (463)
382 1ud0_A HSC70, 70 kDa heat-shoc 21.3 2.4E+02 0.0081 21.8 6.4 15 48-62 7-21 (113)
383 3q0x_A Centriole protein; cent 21.1 3.9E+02 0.013 24.5 8.6 17 75-91 194-210 (228)
384 3q0x_A Centriole protein; cent 21.1 3.3E+02 0.011 25.0 8.1 45 70-121 168-212 (228)
385 3t97_B Nuclear pore complex pr 21.1 2.8E+02 0.0094 21.1 8.0 47 44-97 9-55 (65)
386 1wlq_A Geminin; coiled-coil; 2 20.6 3.2E+02 0.011 21.6 8.0 11 92-102 36-46 (83)
387 2ve7_C Kinetochore protein NUF 20.5 51 0.0018 30.3 2.6 13 41-53 91-103 (250)
388 1yvl_A Signal transducer and a 20.4 5.5E+02 0.019 27.1 10.6 44 43-86 135-178 (683)
389 2v4h_A NF-kappa-B essential mo 20.4 3.7E+02 0.013 22.3 11.8 16 95-110 91-106 (110)
390 2odv_A Plectin 1, HD1; plakin 20.3 4.7E+02 0.016 23.5 10.2 90 32-122 98-193 (235)
391 3i2w_A Syndapin, LD46328P; EFC 20.3 2.5E+02 0.0085 24.9 7.1 37 99-135 186-222 (290)
392 3viq_B Mating-type switching p 20.3 81 0.0028 25.1 3.3 22 50-71 6-27 (85)
393 3e3r_A Calcyphosin, calcyphosi 20.2 76 0.0026 25.5 3.3 25 276-300 154-183 (204)
394 3a7o_A Autophagy protein 16; c 20.2 3.1E+02 0.011 21.3 8.7 52 39-90 19-70 (75)
395 1vyk_A Oxygen-evolving enhance 20.1 3.7E+02 0.013 23.1 7.7 91 12-123 27-121 (149)
No 1
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=98.04 E-value=1.6e-05 Score=62.12 Aligned_cols=67 Identities=22% Similarity=0.387 Sum_probs=62.2
Q ss_pred CCCccchHHHHHHHHhcC-CHHHHHHHHHHHHHHhhccccHHHHHHHHHHhhCCCChhHHHHHHHhhcc
Q 019459 270 RTPRIDGKEFFRQARSRL-SYEQFSAFLASIKELNAQKQTREETLRKAEEIFGTDNKDLYLYFQGLLNR 337 (340)
Q Consensus 270 r~~rvDGKEFFRQARsRL-SYEQFsaFLANIKELNAhkQTREETL~KA~eIFG~eNkDLY~~FegLL~R 337 (340)
.....|.-.||.+||.|| +-+-|..||--++-+|.+.-+|.|.+..+..+|| .|+||+..|..+|..
T Consensus 5 k~~~~de~~Ff~kVK~~l~~~~~Y~eFLk~lnlf~q~~Id~~eLv~~V~~~lg-~~pdL~~~Fk~Fl~~ 72 (75)
T 2ld7_B 5 KHGVGTESLFFDKVRKALRSAEAYENFLRCLVIFNQEVISRAELVQLVSPFLG-KFPELFNWFKNFLGY 72 (75)
T ss_dssp TTTSSHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHT-TCHHHHHHHHHHHTC
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcCHHHHHHHHHHHHc-cCHHHHHHHHHHcCC
Confidence 346679999999999999 7899999999999999999999999999999999 699999999999864
No 2
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=97.49 E-value=0.00051 Score=53.90 Aligned_cols=65 Identities=22% Similarity=0.426 Sum_probs=59.6
Q ss_pred CccchHHHHHHHHhcCC--HHHHHHHHHHHHHHhhccccHHHHHHHHHHhhCCCChhHHHHHHHhhcc
Q 019459 272 PRIDGKEFFRQARSRLS--YEQFSAFLASIKELNAQKQTREETLRKAEEIFGTDNKDLYLYFQGLLNR 337 (340)
Q Consensus 272 ~rvDGKEFFRQARsRLS--YEQFsaFLANIKELNAhkQTREETL~KA~eIFG~eNkDLY~~FegLL~R 337 (340)
+--|...|.+++|.|+. .+-|..||.-+|.+-+++.+..+....+.++|. +|+||...|...|-.
T Consensus 9 ~~~dA~~yl~~VK~rF~~~p~~Y~~FL~im~~fk~~~~~~~~v~~rV~~Lf~-~hpdLi~gFn~FLP~ 75 (80)
T 2cr7_A 9 HVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFH-EHPDLIVGFNAFLPS 75 (80)
T ss_dssp CSCCSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHGG-GCHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc-CCHHHHHHHHHHCcC
Confidence 45589999999999997 699999999999999999999999999999998 689999999988743
No 3
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=97.19 E-value=0.001 Score=51.75 Aligned_cols=62 Identities=23% Similarity=0.466 Sum_probs=57.5
Q ss_pred chHHHHHHHHhcCC--HHHHHHHHHHHHHHhhccccHHHHHHHHHHhhCCCChhHHHHHHHhhcc
Q 019459 275 DGKEFFRQARSRLS--YEQFSAFLASIKELNAQKQTREETLRKAEEIFGTDNKDLYLYFQGLLNR 337 (340)
Q Consensus 275 DGKEFFRQARsRLS--YEQFsaFLANIKELNAhkQTREETL~KA~eIFG~eNkDLY~~FegLL~R 337 (340)
|...|.+++|.|+. .+-|..||.-+|.+-+++.+..+..+.+.++|. +|+||...|...|-.
T Consensus 6 dA~~yl~~VK~~F~~~p~~Y~~FL~im~~~k~~~~~~~~v~~rv~~Lf~-~hpdLi~gFn~FLP~ 69 (77)
T 2czy_A 6 DALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFH-EHPDLIVGFNAFLPL 69 (77)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTT-TCHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHc-CCHHHHHHHHHHCCC
Confidence 67899999999996 689999999999999999999999999999999 689999999988754
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.89 E-value=0.027 Score=47.86 Aligned_cols=79 Identities=14% Similarity=0.090 Sum_probs=44.0
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKL 120 (340)
+|..+|..|+.++..+...+.+-...+..++.++..++..+.+....+..+.++...+..+...+...+..+...+.++
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (284)
T 1c1g_A 3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDA 81 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666666666666666655555555555554444444444444444444444333
No 5
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=96.54 E-value=0.054 Score=43.91 Aligned_cols=80 Identities=14% Similarity=0.121 Sum_probs=65.1
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
.+.-|+..+|.++..+.+...+++..|..|+.|+..+|..|..+..+|..+.+....-.+-...--..|..|||-|.=||
T Consensus 20 ~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 20 NALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35678888999999999999999999999999999999999999999987755444444444444568999999887776
No 6
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.046 Score=48.07 Aligned_cols=76 Identities=11% Similarity=0.151 Sum_probs=56.4
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHhhhHHHH
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAM-TARNLSRDLAKL 120 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~-TvKKL~RDvaKL 120 (340)
-.+..|+.|...|+.++.+.+..+.+-.+-+..+..+++-.+..++.+++...+|.+||+.|.. -+++-++|.++|
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~M 144 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETEAM 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777777777777777777777788888888889999988875 356666666554
No 7
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=96.08 E-value=0.066 Score=45.86 Aligned_cols=70 Identities=19% Similarity=0.179 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019459 38 ITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLS 114 (340)
Q Consensus 38 Its~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~ 114 (340)
++++=|+.-.-++..+...|++++.+++..+++|...+.+++. ++..+..++.+|.+|++.|-..+++|.
T Consensus 61 LaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~-------k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 61 MMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQI-------KAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777888888899999999988888888887665544 555656666778888887777777775
No 8
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=96.03 E-value=0.098 Score=42.16 Aligned_cols=80 Identities=11% Similarity=0.125 Sum_probs=65.4
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
...-|+..+|.++..+.....+++..|..|+.|+..++..|-.+..+|..+.+....-.+....--..|..|||-+.=||
T Consensus 20 ~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 20 NAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34568888899999999999999999999999999999999999999988765554444445555568999999887665
No 9
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=95.66 E-value=0.025 Score=45.16 Aligned_cols=63 Identities=16% Similarity=0.361 Sum_probs=53.5
Q ss_pred CccchHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcccc-------------HHHHHHHHHHhhCCCChhHHHHHHHhh
Q 019459 272 PRIDGKEFFRQARSRL--SYEQFSAFLASIKELNAQKQT-------------REETLRKAEEIFGTDNKDLYLYFQGLL 335 (340)
Q Consensus 272 ~rvDGKEFFRQARsRL--SYEQFsaFLANIKELNAhkQT-------------REETL~KA~eIFG~eNkDLY~~FegLL 335 (340)
+--|...|.+.+|+|. -.|-|.+||.-.+.+-.++.+ .+|....+.++|. +|.||-..|...|
T Consensus 9 ~~~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~~y~~~~~~~~~~~~~~~~~~~~~~V~~~V~~LF~-~h~DLl~~F~~FL 86 (89)
T 1g1e_B 9 EFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFK-NQEDLLSEFGQFL 86 (89)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCSCCHHHHHHHHHHHTT-TCHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHc-cCHHHHHHHHHHC
Confidence 3447899999999999 588999999999988665433 4899999999999 6899999998776
No 10
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=95.35 E-value=0.058 Score=42.61 Aligned_cols=62 Identities=18% Similarity=0.384 Sum_probs=54.8
Q ss_pred cchHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcc----------ccHHHHHHHHHHhhCCCChhHHHHHHHhhc
Q 019459 274 IDGKEFFRQARSRL--SYEQFSAFLASIKELNAQK----------QTREETLRKAEEIFGTDNKDLYLYFQGLLN 336 (340)
Q Consensus 274 vDGKEFFRQARsRL--SYEQFsaFLANIKELNAhk----------QTREETL~KA~eIFG~eNkDLY~~FegLL~ 336 (340)
-|...|.+.+|+|+ -.+-|.+||.-++.+=+++ .|..|....+.++|.. |.||...|...|-
T Consensus 8 ~~A~~yv~kVK~rF~~~p~~Y~~FL~il~~yk~~~~d~~~~~~~~~s~~eV~~~V~~Lf~~-hpDLl~~F~~FLP 81 (85)
T 1e91_A 8 NNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRG-QEDLLSEFGQFLP 81 (85)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTCSSSCCCSSCCCHHHHHHHHHHHTSS-CHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHccccccccccccCcHHHHHHHHHHHHcc-CHHHHHHHHHHCc
Confidence 36789999999999 5699999999999998877 4789999999999986 7899999988774
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.26 E-value=0.16 Score=55.67 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 98 KLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 98 kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
.|.+||..|-.++-.|+.++.+.+
T Consensus 1027 ~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A 1027 ELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555554
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.20 E-value=0.023 Score=62.20 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=25.9
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019459 47 VSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 47 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKL 120 (340)
..+||.++..|..+|.++.+...+|++++..++..+++--+.|...+++.+++.+|+..+.+.|+.|..++++|
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l 996 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKL 996 (1080)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777766666666666666665555555555555555555555555555555555555444
No 13
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=95.05 E-value=0.13 Score=40.67 Aligned_cols=73 Identities=21% Similarity=0.240 Sum_probs=48.2
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019459 48 SKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 48 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKL 120 (340)
+.||+|...+-++|.+-.....+|++||..|+..|.++..+=.++..|-.+|.+--|.=+.-+--|.+-++||
T Consensus 2 ~~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 2 SHMAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3588898999999999999999999999999998888887776655555555555555555555555555554
No 14
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.85 E-value=0.54 Score=39.27 Aligned_cols=62 Identities=21% Similarity=0.254 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 61 LYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 61 laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
+++.+.....|..+-..|+..|.++..|+..-.+.|..|..++..|-..+..|..|+.-||.
T Consensus 64 l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 64 LADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666677788888888888888888888888888888888888888877763
No 15
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=94.20 E-value=0.73 Score=36.41 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=63.7
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDL 117 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDv 117 (340)
-+..++.|+..|+..+..-.....+|+.++..|.....+....|.-|.+...+|.+.+.-|-..++.|+-.|
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355789999999999999999999999999999998888888888889999999999999999999887655
No 16
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=94.09 E-value=0.15 Score=41.96 Aligned_cols=63 Identities=17% Similarity=0.377 Sum_probs=54.3
Q ss_pred cchHHHHHHHHhcC--CHHHHHHHHHHHHHHhhccc----------cHHHHHHHHHHhhCCCChhHHHHHHHhhcc
Q 019459 274 IDGKEFFRQARSRL--SYEQFSAFLASIKELNAQKQ----------TREETLRKAEEIFGTDNKDLYLYFQGLLNR 337 (340)
Q Consensus 274 vDGKEFFRQARsRL--SYEQFsaFLANIKELNAhkQ----------TREETL~KA~eIFG~eNkDLY~~FegLL~R 337 (340)
-|...|.+.+|+|. -++-|..||.-.+.+=+++. |-.|....+.++|.. |.||...|...|-.
T Consensus 8 ~dA~~YvnkVK~rF~d~p~vY~~FL~IL~~yk~~~~d~~g~~~~~~s~~eV~~~V~~LF~~-hpDLl~eFn~FLP~ 82 (105)
T 2f05_A 8 NNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRG-QEDLLSEFGQFLPE 82 (105)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTT-CHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhccccccccccccCcHHHHHHHHHHHHcc-CHHHHHHHHHHCCC
Confidence 36789999999999 56999999999999977763 568999999999986 78999999887743
No 17
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=94.06 E-value=0.31 Score=42.86 Aligned_cols=61 Identities=13% Similarity=0.143 Sum_probs=49.9
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019459 41 MAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAK 101 (340)
Q Consensus 41 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~ 101 (340)
..+.+-...|+.++..|...+.+|...+..|++-+..|.-++..+.+++....+||.+|.+
T Consensus 71 ~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 71 AILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888888888888888888888888888888888888888888888877764
No 18
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=93.84 E-value=0.85 Score=39.39 Aligned_cols=76 Identities=13% Similarity=0.193 Sum_probs=71.9
Q ss_pred HHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 019459 40 SMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSR 115 (340)
Q Consensus 40 s~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~R 115 (340)
+++.--|+..||.++...+....+.|+...+...|+.-++..|..+..|+..+......|..|-+.+.+.+|.|.-
T Consensus 47 ~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 47 AQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLED 122 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 5677789999999999999999999999999999999999999999999999999999999999999999999864
No 19
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.48 E-value=0.6 Score=39.91 Aligned_cols=63 Identities=17% Similarity=0.182 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 60 MLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 60 ~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
.+.+..+.+..|+..+..++.++.+....|..+..+...+.+|+..|-.-+..|.+.+.|||+
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667788888888888888999999999999999999999999999999999999985
No 20
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=93.36 E-value=0.58 Score=39.40 Aligned_cols=61 Identities=23% Similarity=0.269 Sum_probs=49.0
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSL 106 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sL 106 (340)
+..-|..|=.|+..| ..|-.+.|.+|+.||+.||.+|.+...-...|++|+..|-.|...|
T Consensus 20 Lkreie~lk~ele~l---~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 20 LYREISGLKAQLENM---KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555 5688999999999999999999999988888999999998877754
No 21
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=93.25 E-value=2.2 Score=37.40 Aligned_cols=83 Identities=16% Similarity=0.136 Sum_probs=64.9
Q ss_pred HHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019459 39 TSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLA 118 (340)
Q Consensus 39 ts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDva 118 (340)
...-+.-|...+|.+|..|..+|.|-+.-...-+..|..|+..+.+...+|....+.+..+..|-+...+.+.-+.-++-
T Consensus 64 seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~ 143 (155)
T 2efr_A 64 QAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNY 143 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Confidence 34456678899999999999999999988888889999999999999999988888888888887765555554444444
Q ss_pred HHH
Q 019459 119 KLE 121 (340)
Q Consensus 119 KLE 121 (340)
.|+
T Consensus 144 ~~~ 146 (155)
T 2efr_A 144 HLE 146 (155)
T ss_dssp HHH
T ss_pred HHH
Confidence 343
No 22
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=93.20 E-value=0.25 Score=44.84 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=38.2
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 47 VSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKL 89 (340)
Q Consensus 47 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl 89 (340)
|++|-+|...|+++|..|+..|..|++++.+++.........+
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQT 64 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 6789999999999999999999999999999998886555555
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.05 E-value=0.43 Score=47.08 Aligned_cols=69 Identities=16% Similarity=0.176 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019459 66 RLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLA-------MTARNLSRDLAKLETFKRQLMQSLNDD 134 (340)
Q Consensus 66 ~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa-------~TvKKL~RDvaKLE~FKk~LmqSLqeD 134 (340)
+.+..++++...++..++........-.++..+|.+|+..|- ..++.|.++++++..=.|+|++-+++.
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~ 584 (597)
T 3oja_B 509 KVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRN 584 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344455555555555555554444433344444445554444 466777777777766666677655543
No 24
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=93.05 E-value=2 Score=35.85 Aligned_cols=74 Identities=18% Similarity=0.237 Sum_probs=39.1
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019459 47 VSKLETETGTMRQMLYEKDRLICELEERLSHV-------QKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAK 119 (340)
Q Consensus 47 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~l-------e~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaK 119 (340)
|..++.++..|+.+|..-.....+|+.+...| ..+|+.-...|.-+.+-..+|...+..|-..++-|..++..
T Consensus 15 ~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rlee 94 (129)
T 2fxo_A 15 MASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLED 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566666666666654444444444433333 33333344444555555556666666666666666655554
Q ss_pred H
Q 019459 120 L 120 (340)
Q Consensus 120 L 120 (340)
.
T Consensus 95 e 95 (129)
T 2fxo_A 95 E 95 (129)
T ss_dssp H
T ss_pred H
Confidence 3
No 25
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=92.82 E-value=1.7 Score=39.64 Aligned_cols=51 Identities=10% Similarity=0.159 Sum_probs=36.0
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFID 94 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~d 94 (340)
-..|..||.++..|+..+......+.+++..+..++..+.+..+|+....+
T Consensus 31 p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~ 81 (256)
T 3na7_A 31 RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQK 81 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777777777777777777777766655443
No 26
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=92.81 E-value=1.1 Score=37.56 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=27.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 87 SKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 87 ~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
.....=..+-+||+.|+..|...+..|+|.+.+|+
T Consensus 76 ~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l~ 110 (110)
T 2v4h_A 76 ADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLK 110 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhcC
Confidence 33334445668999999999999999999998873
No 27
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=92.74 E-value=0.83 Score=50.13 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=46.7
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHhhhHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFID-------DNAKLAKERDSLAMTARNLSRDLA 118 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~d-------e~~kL~~E~~sLa~TvKKL~RDva 118 (340)
++..|+.|+..|+.+|..-+..+.+|++++..|+.++.++...|....+ +...|..++..|...++.|..+++
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~ele 937 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIE 937 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777777777777777666666655554444 445555555555555555555554
Q ss_pred HHHH
Q 019459 119 KLET 122 (340)
Q Consensus 119 KLE~ 122 (340)
.++.
T Consensus 938 e~ee 941 (1184)
T 1i84_S 938 EEEE 941 (1184)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.62 E-value=2.2 Score=42.00 Aligned_cols=46 Identities=15% Similarity=0.264 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 77 HVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 77 ~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
.++...+...++....+.++.++.++-+.+....++|.+++.+||.
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 551 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEK 551 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHH
Confidence 3344444444444444445555554444444444544455554443
No 29
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=92.47 E-value=1.3 Score=36.21 Aligned_cols=89 Identities=13% Similarity=0.080 Sum_probs=61.8
Q ss_pred chhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019459 28 PYDQLDLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLA 107 (340)
Q Consensus 28 PyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa 107 (340)
|-|||.++..-+..|....++....|...-|.+|.+-...+.+=.=+....-.+-.+.++||..|.-...|=.+..+.|-
T Consensus 5 P~eql~~te~Ai~~A~~aga~~~apEl~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe~DArLAeAka~~~Ka~~~~~el~ 84 (98)
T 4fm3_A 5 PLEQMRLTEQALEQAKAVGATDDVAELKLAQDKYAAAQIAMTAESYKKARLLAEQAELDARLAESKVLTQKSKDQLGELD 84 (98)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999888888888887766555443333333333444556666666656666666666666
Q ss_pred HHHHHHhhh
Q 019459 108 MTARNLSRD 116 (340)
Q Consensus 108 ~TvKKL~RD 116 (340)
..|..|...
T Consensus 85 ~~I~~LrqE 93 (98)
T 4fm3_A 85 KSLKRLRKQ 93 (98)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
No 30
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=92.26 E-value=2.1 Score=38.62 Aligned_cols=73 Identities=22% Similarity=0.251 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 019459 61 LYEKDRLICELEERLSHVQKVYQEADSKLKI-----------FIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQ 129 (340)
Q Consensus 61 laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~-----------a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~Lmq 129 (340)
|..-+..+.+|+.++..|...+.....|+.. ..+|...|.+++..|...+++|--.-+-||.=.|.+.-
T Consensus 51 L~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~ 130 (189)
T 2v71_A 51 LVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIM 130 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 3333444444444444444444444433333 34445555666666666666666666666666666666
Q ss_pred hccc
Q 019459 130 SLND 133 (340)
Q Consensus 130 SLqe 133 (340)
||.|
T Consensus 131 SleD 134 (189)
T 2v71_A 131 SLED 134 (189)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 6543
No 31
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=91.64 E-value=2.5 Score=38.47 Aligned_cols=57 Identities=14% Similarity=0.173 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 32 LDLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLK 90 (340)
Q Consensus 32 LdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~ 90 (340)
=+|-..|. .+..|++.||.++..+-.++.++...+.++++++..++..|.+..+.+.
T Consensus 93 ~aL~kEie--~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 149 (256)
T 3na7_A 93 RSLNIEED--IAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVE 149 (256)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 2335555555555555555555555555555555555555544444433
No 32
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=91.45 E-value=1.1 Score=35.13 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=43.6
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNL 113 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL 113 (340)
--+.|+.-+..||..|.+||..|..|++.+. --+.-....-||..-|.=||+-|-.-..+|
T Consensus 12 ~~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~-------lk~kd~ErLNDEiislNIENNlL~~rl~~l 72 (75)
T 3a7o_A 12 HDDALLNTLAILQKELKSKEQEIRRLKEVIA-------LKNKNTERLNDELISGTIENNVLQQKLSDL 72 (75)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhcccHHHhhHHHHHhHHHHHHHHHHHHHH
Confidence 3445666789999999999999999999876 333334444567777888888887655444
No 33
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=91.35 E-value=3.6 Score=34.31 Aligned_cols=74 Identities=22% Similarity=0.341 Sum_probs=42.7
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
+..++.+|+.|+..+|.|+..- ..+++...+...+|..+|..+|+.|..-+++|-..-+-||.
T Consensus 8 L~~~~~~L~~E~e~~k~K~~~~-----------------~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER 70 (111)
T 2v66_B 8 LQADNQRLKYEVEALKEKLEHQ-----------------YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 4556666677766666655443 23444444444555555666666666666666666666666
Q ss_pred HHHHHHhhccc
Q 019459 123 FKRQLMQSLND 133 (340)
Q Consensus 123 FKk~LmqSLqe 133 (340)
=.|...-||.|
T Consensus 71 ~~R~t~~SLeD 81 (111)
T 2v66_B 71 AKRATIVSLED 81 (111)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhHHH
Confidence 66666555543
No 34
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=91.02 E-value=1.3 Score=53.88 Aligned_cols=87 Identities=20% Similarity=0.301 Sum_probs=63.7
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQE--------------ADSKLKIFIDDNAKLAKERDSLAMTA 110 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e--------------~~~rl~~a~de~~kL~~E~~sLa~Tv 110 (340)
.++..+|.+....+++|.++...+.+|++++..|+.++.+ +..||.+|..=...|..|+..=..++
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~ 2093 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQS 2093 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHH
Confidence 4667777777777788888888777777777776666554 45566666666677888998888888
Q ss_pred HHHhhhHHHH------------------HHHHHHHHhhc
Q 019459 111 RNLSRDLAKL------------------ETFKRQLMQSL 131 (340)
Q Consensus 111 KKL~RDvaKL------------------E~FKk~LmqSL 131 (340)
+.|......| +.||+.||+..
T Consensus 2094 ~~l~~~~~~L~GD~LLaaafisY~G~f~~~~R~~l~~~W 2132 (3245)
T 3vkg_A 2094 ENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDLMRKW 2132 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 8888777765 45777777654
No 35
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=90.64 E-value=3.6 Score=32.00 Aligned_cols=64 Identities=23% Similarity=0.241 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019459 57 MRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 57 LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKL 120 (340)
+-++|.+-.....+|++||..|+..|.++..+=.+...|-.+|.+--|.=+.-+.-|.+-++||
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3455666666677788888877777777766655544454444444444444444455555543
No 36
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=90.53 E-value=0.19 Score=47.30 Aligned_cols=69 Identities=13% Similarity=0.203 Sum_probs=21.2
Q ss_pred HHHhhhhHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019459 44 ASRVSKLETETGTMRQMLYEK---DRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEK---d~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKL 120 (340)
+..|..|+.|+..||.+|.+- .+.... ++|+..|+.++....+|. ++|..+.+.|-..+.+|..+|++|
T Consensus 23 ~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~-~~~l~eL~~ql~~L~arN-------e~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 23 AAELEQLRREAAVLREQLENAVGSHAPTRS-ARDIHQLEARIDSLAARN-------SKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp -----------------------------C-CHHHHHHHHHHHHHTTTH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhhcccCcccchh-hhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666777888888888888654 333333 445554444444333333 345555555555555555555554
No 37
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=90.44 E-value=0.57 Score=40.93 Aligned_cols=50 Identities=22% Similarity=0.271 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019459 78 VQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQL 127 (340)
Q Consensus 78 le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~L 127 (340)
++..|+...+.+.....|..||..|+.-+-+.-+.|.||+.-...-||+|
T Consensus 85 ~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeASReAKKql 134 (146)
T 2xnx_M 85 AKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQV 134 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGTTTC---------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444556666676666666666677777777766666655
No 38
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=90.35 E-value=5.5 Score=32.99 Aligned_cols=40 Identities=15% Similarity=0.269 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 52 TETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 52 ~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
.|+..||..+..-...|..|+.+...||.+|.++..+...
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~ 75 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGEL 75 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4444555555544455555555555555555555544443
No 39
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=90.34 E-value=1.8 Score=33.44 Aligned_cols=48 Identities=13% Similarity=0.178 Sum_probs=26.6
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
..|+..+|.++......+...+..|..|+.|+..||..|..+..+|..
T Consensus 19 ~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 19 LDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555555544
No 40
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=90.03 E-value=4.9 Score=32.04 Aligned_cols=69 Identities=22% Similarity=0.278 Sum_probs=43.3
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLS-HVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNL 113 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~-~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL 113 (340)
.|--||-.||.+-..|-.++.+-... . ..++. -.|..+.+....+..+.-|+.+|.-|.++|...+..+
T Consensus 20 syIdKVR~LEqqN~~Le~~i~~l~~~--~-~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~ 89 (93)
T 3s4r_A 20 NLIDKVRFLEQQNKILLAELEQLKGQ--G-KSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRL 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc--c-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46679999999988887766433211 0 11122 2467777777777776666666666666666555444
No 41
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=89.76 E-value=2.1 Score=43.86 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019459 52 TETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLA 118 (340)
Q Consensus 52 ~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDva 118 (340)
+|-.+|||.+.++...|..++.-++++...+...+.+..+|.+....+.+|+..+-+.+-.++.+++
T Consensus 349 ae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiA 415 (602)
T 1cii_A 349 AEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIA 415 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 5678899999999999999999999999999999999999999999999999999777766666544
No 42
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=89.74 E-value=4.8 Score=31.96 Aligned_cols=68 Identities=18% Similarity=0.176 Sum_probs=50.1
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019459 47 VSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLS 114 (340)
Q Consensus 47 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~ 114 (340)
..+||+-|..+=..++-=.-.|.+|.++-..|..+.+++...-..-.+||.+|..|..+-..-+.+|-
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667666666666666666777888888888888888777777777788888888887777666664
No 43
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=89.50 E-value=1.9 Score=34.15 Aligned_cols=47 Identities=19% Similarity=0.329 Sum_probs=21.1
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKL 89 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl 89 (340)
+..||.+||.-....++.+.+--..|.+|+..|..|-..+.+..-.|
T Consensus 4 ~e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l 50 (83)
T 2xdj_A 4 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQL 50 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 35567777664444444444444444444444443333333333333
No 44
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=89.14 E-value=1.2 Score=34.69 Aligned_cols=37 Identities=27% Similarity=0.304 Sum_probs=16.7
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 47 VSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQ 83 (340)
Q Consensus 47 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 83 (340)
|-.|+..+.+-..+|.+||..|.+|++++...|..++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~ 57 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQ 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444333
No 45
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=89.03 E-value=5.5 Score=31.53 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=18.9
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 48 SKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEA 85 (340)
Q Consensus 48 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~ 85 (340)
..++.+...++.+|.+-...+.+++.++..++..+...
T Consensus 6 ~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 6 EELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555555554455555555555555554443
No 46
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=88.83 E-value=0.59 Score=30.97 Aligned_cols=30 Identities=30% Similarity=0.567 Sum_probs=23.1
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 47 VSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQ 83 (340)
Q Consensus 47 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 83 (340)
||+||.|++.|-. .+.+||+|+..||...|
T Consensus 1 isrlee~~r~l~~-------ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 1 VSRLEEDVRNLNA-------IVQKLQERLDRLEETVQ 30 (32)
T ss_dssp CCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Confidence 5788988888754 56678999988887654
No 47
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=88.66 E-value=5.5 Score=33.10 Aligned_cols=14 Identities=21% Similarity=0.221 Sum_probs=6.7
Q ss_pred HhhhhHhHHHHHHH
Q 019459 46 RVSKLETETGTMRQ 59 (340)
Q Consensus 46 RVs~LE~E~~~LR~ 59 (340)
.|+.|+.|+..|+.
T Consensus 46 ~iq~L~~el~~l~~ 59 (131)
T 3tnu_A 46 TMQNLEIELQSQLS 59 (131)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 44455555544443
No 48
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.55 E-value=0.92 Score=39.11 Aligned_cols=50 Identities=16% Similarity=0.254 Sum_probs=32.2
Q ss_pred CCchhhhHHHHHHHHHHHHHHhhhhHh---HHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 26 TDPYDQLDLARKITSMAIASRVSKLET---ETGTMRQMLYEKDRLICELEERLS 76 (340)
Q Consensus 26 ~DPyEQLdlArkIts~A~atRVs~LE~---E~~~LR~~laEKd~~i~~Lq~r~~ 76 (340)
+|=-++|.++|++.+. ...||..||. +...|...+...+..+..|+.++.
T Consensus 4 s~LEd~L~~~r~~l~~-~~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~ 56 (135)
T 2e7s_A 4 GSLEEQLNKSLKTIAS-QKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIA 56 (135)
T ss_dssp --CCSTTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHH
T ss_pred chHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3456789999997654 4788888887 455555555556666666666443
No 49
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=88.49 E-value=7.1 Score=30.02 Aligned_cols=58 Identities=19% Similarity=0.123 Sum_probs=37.7
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKL 99 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL 99 (340)
||..++..|+.|......++.+-...+.+.+.+...+|..+....-|+...++|..+.
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ 60 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKY 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777766666666666666666666666666666666666654444443
No 50
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=88.34 E-value=2.4 Score=34.78 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=13.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 019459 91 IFIDDNAKLAKERDSLAMTARNL 113 (340)
Q Consensus 91 ~a~de~~kL~~E~~sLa~TvKKL 113 (340)
++.++.++|+.|...|-..|++|
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666655555544
No 51
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=88.19 E-value=7.7 Score=34.49 Aligned_cols=59 Identities=10% Similarity=0.199 Sum_probs=41.5
Q ss_pred hhHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019459 49 KLETETGTMRQMLYE-------KDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLA 107 (340)
Q Consensus 49 ~LE~E~~~LR~~laE-------Kd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa 107 (340)
.||.|+..|..+|.+ ....|.+|+.|+..|+..|.....++..+..|+.+|++.-..|-
T Consensus 66 ~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lE 131 (168)
T 3o0z_A 66 QTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSE 131 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555543 34678899999999999999999999887777777665444443
No 52
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=87.55 E-value=2.3 Score=35.10 Aligned_cols=51 Identities=24% Similarity=0.316 Sum_probs=32.8
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019459 41 MAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDS 105 (340)
Q Consensus 41 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~s 105 (340)
|-+-.|+++||.|..+||..-.+=+..|.+|+..|. +...||..|..||..
T Consensus 40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~eve--------------rL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 40 LELEKSLSRMEDENNRLRLESKRLDARVRELELELD--------------RLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH--------------HHHHHHHHHHHHHHh
Confidence 345678999999999999885555455555554444 323356666666543
No 53
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=87.50 E-value=8.5 Score=29.85 Aligned_cols=62 Identities=13% Similarity=0.206 Sum_probs=41.5
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSL 106 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sL 106 (340)
++.+....||..++.+.+.. ...+.+++.++..+|.+|+++.+.+.+-+.|-..|.+=|-.|
T Consensus 5 ~l~~~~~sLE~~l~e~e~~~---~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~L 66 (84)
T 1gk4_A 5 ALKGTNESLERQMREMEENF---AVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMAL 66 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666777666666555 345678899999999999998888877555554444444333
No 54
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=87.43 E-value=3.3 Score=35.10 Aligned_cols=54 Identities=11% Similarity=0.129 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019459 54 TGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTA 110 (340)
Q Consensus 54 ~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~Tv 110 (340)
+-.|+..|.++.... +++|..|+.++...+++|.-+..|-+.|-+++..|..-+
T Consensus 55 V~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 55 VMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 345666666655544 666666777777777777777777777777777665433
No 55
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=87.32 E-value=0.98 Score=34.79 Aligned_cols=44 Identities=20% Similarity=0.294 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019459 62 YEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAK 119 (340)
Q Consensus 62 aEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaK 119 (340)
.-|+.+|.+|+.+|..|+..... |..||..|-..|..|.-.+..
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~~--------------l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHSS--------------TTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999888764443 556666666666666655443
No 56
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=86.65 E-value=4.5 Score=35.28 Aligned_cols=69 Identities=14% Similarity=0.264 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH------HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019459 64 KDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLA------KERDSLAMTARNLSRDLAKLETFKRQLMQSLN 132 (340)
Q Consensus 64 Kd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~------~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLq 132 (340)
|+++..+|++++..+|.+|++..-.+++++.|+.+-. .-...+.+--...+...++++..|+.|.+-|+
T Consensus 27 Ke~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~ 101 (150)
T 4dci_A 27 KEEAEREISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQA 101 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999999999999998887622 11122333335667778888888988887774
No 57
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.65 E-value=16 Score=32.01 Aligned_cols=29 Identities=10% Similarity=0.114 Sum_probs=16.0
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHhHHHHHH
Q 019459 29 YDQLDLARKITSMAIASRVSKLETETGTMR 58 (340)
Q Consensus 29 yEQLdlArkIts~A~atRVs~LE~E~~~LR 58 (340)
.+.|-.+|+... ....|+..||.+-..++
T Consensus 19 eD~L~~~R~el~-~~~~ri~~lE~~r~~~~ 47 (154)
T 2ocy_A 19 EEQLNKSLKTIA-SQKAAIENYNQLKEDYN 47 (154)
T ss_dssp HHHHHHHHHHHH-HHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 455666666654 33556666665444333
No 58
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=86.64 E-value=9.1 Score=31.55 Aligned_cols=62 Identities=15% Similarity=0.149 Sum_probs=39.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019459 50 LETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLA 118 (340)
Q Consensus 50 LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDva 118 (340)
.|+++..||.++.+-...-+.|+-.+..+..++.+-..|... -...|.++-+.+..|.+||+
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~-------E~~~r~~~E~di~~lrK~lD 79 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE-------EMLQREEAENTLQSFRQDVD 79 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHhhhccc
Confidence 478888999988877777777777777777776666665532 11223444444555555554
No 59
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=86.60 E-value=6.2 Score=35.56 Aligned_cols=67 Identities=15% Similarity=0.259 Sum_probs=28.0
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRL----ICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTA 110 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~----i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~Tv 110 (340)
.+++.+|..|+..+|.++..=... |..|++.+..|.........+|+-.+..|-.|-.....+..++
T Consensus 62 ~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~Sl 132 (189)
T 2v71_A 62 QADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSL 132 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhH
Confidence 334444444444444444333222 4444444444444444444444444444444444433333333
No 60
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=86.40 E-value=13 Score=30.89 Aligned_cols=80 Identities=9% Similarity=0.120 Sum_probs=46.8
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 019459 48 SKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDN----AKLAKERDSLAMTARNLSRDLAKLETF 123 (340)
Q Consensus 48 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~----~kL~~E~~sLa~TvKKL~RDvaKLE~F 123 (340)
..-..|+..||..+..-...|..|+.+...||.+|.++..+....+++- ..|-.|-..+-..+-...++...|=..
T Consensus 34 ~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~v 113 (131)
T 3tnu_A 34 QSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDV 113 (131)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677788888888888888888888888888888888776655432 233334444444444455555555555
Q ss_pred HHHH
Q 019459 124 KRQL 127 (340)
Q Consensus 124 Kk~L 127 (340)
|-.|
T Consensus 114 Kl~L 117 (131)
T 3tnu_A 114 KTRL 117 (131)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 61
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=86.36 E-value=2.6 Score=32.85 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 54 TGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 54 ~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
+..|...|.+|++.|...++++..||..|++-++-+..
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~ 58 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQM 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999888877776665543
No 62
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=86.26 E-value=2.4 Score=30.03 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019459 69 CELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTAR 111 (340)
Q Consensus 69 ~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvK 111 (340)
.+|+.|+..||.-..|...|++. |+.||.-|-+-+|
T Consensus 6 ~eLE~r~k~le~~naeLEervst-------Lq~EN~mLRqvl~ 41 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLST-------LQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHhc
Confidence 34555555555555555556655 6666666655443
No 63
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=86.11 E-value=13 Score=30.64 Aligned_cols=55 Identities=11% Similarity=0.295 Sum_probs=32.9
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICEL-----------EERLSHVQKVYQEADSKLKIFIDDN 96 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~L-----------q~r~~~le~~L~e~~~rl~~a~de~ 96 (340)
-+-..|+.|+.|+..|+.+-+-=...|.++ +.++..||.+|+++.+.+.+-+.|-
T Consensus 40 elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EY 105 (129)
T 3tnu_B 40 EMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREY 105 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345678888888888877655555555444 4445555555555555555433333
No 64
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=85.92 E-value=15 Score=30.99 Aligned_cols=85 Identities=11% Similarity=0.183 Sum_probs=52.5
Q ss_pred HHHHHHHhhhhHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------------HHHHHH
Q 019459 40 SMAIASRVSKLETETGTMRQMLYE----KDRLICELEERLSHVQKVYQEADSKLKIFIDDN-------------AKLAKE 102 (340)
Q Consensus 40 s~A~atRVs~LE~E~~~LR~~laE----Kd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~-------------~kL~~E 102 (340)
...|-++...||.|...|.++=.+ .......-+.++...........+|+..+...- .++.+.
T Consensus 4 a~~i~~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~ 83 (119)
T 3etw_A 4 AASLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDA 83 (119)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence 356788999999999988764332 233333336667777777777777776655432 345555
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH
Q 019459 103 RDSLAMTARNLSRDLAKLETFK 124 (340)
Q Consensus 103 ~~sLa~TvKKL~RDvaKLE~FK 124 (340)
+..|-.-+|+...=|+-+|.+|
T Consensus 84 ~keLd~~ik~qekiIdnFE~ik 105 (119)
T 3etw_A 84 LKKLEAEMEQQKAVISDFEKIQ 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555444
No 65
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=85.14 E-value=4.6 Score=32.46 Aligned_cols=55 Identities=11% Similarity=0.107 Sum_probs=31.7
Q ss_pred hhhHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019459 48 SKLETETGTMRQMLYEKD----RLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKE 102 (340)
Q Consensus 48 s~LE~E~~~LR~~laEKd----~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E 102 (340)
+.|+.....|-..|.|-+ ..+.+++..+..||.+|+++.+.+..-+.|-..|..=
T Consensus 15 ~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Llnv 73 (95)
T 3mov_A 15 FQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDV 73 (95)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333 3567788888889998888888876644444434333
No 66
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=84.91 E-value=6.4 Score=30.64 Aligned_cols=57 Identities=26% Similarity=0.367 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019459 55 GTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLA 118 (340)
Q Consensus 55 ~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDva 118 (340)
..|-.+|.+|+++|..|..=|.+|- ++|-.-.+-|.||..+...+..-+..|++|+.
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR-------~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~ 62 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLR-------SKLEKYVDITKKLEDQNLNLQIKISDLEKKLS 62 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcc
Confidence 4678899999999999988887554 47777778888899998888888888887753
No 67
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.01 E-value=6.8 Score=32.05 Aligned_cols=45 Identities=18% Similarity=0.291 Sum_probs=29.8
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKL 89 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl 89 (340)
.+++..+.|+.+|+..|.+....-.+.+.....++.+|-+.++-|
T Consensus 19 ~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 19 RELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556667777777777766666666666666666666666554
No 68
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=83.91 E-value=19 Score=32.09 Aligned_cols=76 Identities=13% Similarity=0.111 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHh
Q 019459 54 TGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLA--KLETFKRQLMQ 129 (340)
Q Consensus 54 ~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDva--KLE~FKk~Lmq 129 (340)
|.-||.++++.+..+++..++|.....+|.++..-+.+|..+.+|+..-+.--....+++.--.. -+|-|+..+-+
T Consensus 80 I~llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~eKfelHrqiwqaE~kre~E~qEElEqEEf~s~~~~ 157 (169)
T 3k29_A 80 IKVVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEKTRLHKEEWMKEALKEEARQEEKEQDEMGQLLHQ 157 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34477777777777777777777777777777777777777777776666655555566555454 35567666554
No 69
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=83.30 E-value=10 Score=30.92 Aligned_cols=68 Identities=12% Similarity=0.192 Sum_probs=38.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 51 ETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 51 E~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
..+|..|++.++.+...+ +++.-|..+..-=..-...=..+-+||..|+..|...+..|.|.+.+|..
T Consensus 22 q~~id~lke~~~q~~~~~----E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~~ 89 (94)
T 3jsv_C 22 QELIDKLKEEAEQHKIVM----ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKV 89 (94)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555544444211 33333333333333333344456689999999999999999999988854
No 70
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=82.23 E-value=24 Score=35.69 Aligned_cols=89 Identities=12% Similarity=0.139 Sum_probs=45.4
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH------------HHHHHHHHHHHHH
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAK------------LAKERDSLAMTAR 111 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~k------------L~~E~~sLa~TvK 111 (340)
...+..||..+..|=++-.+-...|..|+..+...|.++.+....++...++.++ ....-..|...+.
T Consensus 99 ~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~ 178 (464)
T 1m1j_B 99 KPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVID 178 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 3444555555544444333333344444444444444444433333222222211 1222344566777
Q ss_pred HHhhhHHHHHHHHHHHHhhcc
Q 019459 112 NLSRDLAKLETFKRQLMQSLN 132 (340)
Q Consensus 112 KL~RDvaKLE~FKk~LmqSLq 132 (340)
+|...|.+||..-.+++..+.
T Consensus 179 ~l~~ki~~l~~~~~~~~~~~~ 199 (464)
T 1m1j_B 179 SLHKKIQKLENAIATQTDYCR 199 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 888888899988888887654
No 71
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=82.22 E-value=27 Score=31.04 Aligned_cols=80 Identities=14% Similarity=0.149 Sum_probs=34.2
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019459 47 VSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQ 126 (340)
Q Consensus 47 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~ 126 (340)
++.+|.-++.|+.++.-=...-..|++.+..|+.+|.+=..-..+..+....|..-..+|-.-++.+.--+.|++.=+|+
T Consensus 43 ~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~ 122 (168)
T 3o0z_A 43 ISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKE 122 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444445555555555554443333333333333333333333333333333333333333333
No 72
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=82.22 E-value=15 Score=29.42 Aligned_cols=81 Identities=20% Similarity=0.169 Sum_probs=53.5
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHH
Q 019459 41 MAIASRVSKLETETGTMRQMLYEKDRLICEL------EERLSHVQKVYQEADSKLKIFIDDNAKL-AKERDSLAMTARNL 113 (340)
Q Consensus 41 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~L------q~r~~~le~~L~e~~~rl~~a~de~~kL-~~E~~sLa~TvKKL 113 (340)
++-+.-....|.|...|...+..|=..|..+ ...+..+|..|.||..=|.+-.-|...+ ...|..+.+.|+.-
T Consensus 11 ~~mSelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Y 90 (102)
T 2qyw_A 11 AASSEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNY 90 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3345666777777777777776666665333 3456667777777777776654444333 35678888888888
Q ss_pred hhhHHHHH
Q 019459 114 SRDLAKLE 121 (340)
Q Consensus 114 ~RDvaKLE 121 (340)
.+||++|.
T Consensus 91 k~dL~~lk 98 (102)
T 2qyw_A 91 RKDLAKLH 98 (102)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
No 73
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=82.20 E-value=4.4 Score=33.86 Aligned_cols=88 Identities=18% Similarity=0.150 Sum_probs=35.8
Q ss_pred hhhhHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 47 VSKLETETGTMRQMLY----EKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 47 Vs~LE~E~~~LR~~la----EKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
|.+|..+.+.|+.+|. +|+.+...+.++.+.-..+.++...+...++.....|. .....+....+..|++|-.
T Consensus 8 ~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lq---q~fsq~q~~vq~qL~~Lt~ 84 (112)
T 1x79_B 8 VKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQ---QGLSQAKRDVQEQMAVLMQ 84 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555543 34444444444444444444444444443333322232 2344444444555555544
Q ss_pred HHHHH---HhhccccCCC
Q 019459 123 FKRQL---MQSLNDDNSS 137 (340)
Q Consensus 123 FKk~L---mqSLqeD~~~ 137 (340)
=++.| +.-||.||+.
T Consensus 85 ~Re~V~~eL~rLQ~eNd~ 102 (112)
T 1x79_B 85 SREQVSEELVRLQKDNDS 102 (112)
T ss_dssp HHHHHHTC----------
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 44444 3445666665
No 74
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=80.91 E-value=3.6 Score=40.30 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=14.2
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEERLS 76 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~ 76 (340)
+.+..|+.|+..|++++.+.++.|++++.++.
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 34 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMK 34 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555554444444444444433
No 75
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=80.86 E-value=9.6 Score=36.81 Aligned_cols=93 Identities=12% Similarity=0.220 Sum_probs=59.0
Q ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019459 38 ITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDL 117 (340)
Q Consensus 38 Its~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDv 117 (340)
+|-..|-+|+++|+.++..+++.+..|.+.+.+|+..+..-...... ..++ ..+-....|++ +..+|--|...-
T Consensus 302 ~~~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~e----~~~~~~~~~~~~ 375 (406)
T 4dyl_A 302 LTVESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEEENTHP-RERV-QLLGKRQVLQE----ALQGLQVALCSQ 375 (406)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT-TCGG-GGHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-chHH-HHHhHHhhHHH----HHHHHHHHHhHH
Confidence 34567889999999999999999999999999988876543210000 0000 00001111121 234566677778
Q ss_pred HHHHHHHHHHHhhccccCC
Q 019459 118 AKLETFKRQLMQSLNDDNS 136 (340)
Q Consensus 118 aKLE~FKk~LmqSLqeD~~ 136 (340)
+||++=|-.|-+.|++=..
T Consensus 376 ~~~~~q~~~~~~~~~~~~~ 394 (406)
T 4dyl_A 376 AKLQAQQELLQTKLEHLGP 394 (406)
T ss_dssp HHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 8888888888777766443
No 76
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.82 E-value=22 Score=29.07 Aligned_cols=54 Identities=11% Similarity=0.198 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019459 55 GTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAM 108 (340)
Q Consensus 55 ~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~ 108 (340)
..||.++..=.....+....+..|-..|.+-..+-..|+.++.++..|-..|..
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444555555555566666555555555543
No 77
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=79.25 E-value=22 Score=28.24 Aligned_cols=40 Identities=13% Similarity=0.166 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019459 72 EERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTAR 111 (340)
Q Consensus 72 q~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvK 111 (340)
.+|+..++..+-++..+..++.++..-|.+-...|-+.+-
T Consensus 22 ~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld 61 (101)
T 3u59_A 22 IDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVE 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554444444444444444433333
No 78
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=78.91 E-value=32 Score=32.96 Aligned_cols=73 Identities=18% Similarity=0.282 Sum_probs=35.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHH-------HHHHHHHHHHHHHhhhH
Q 019459 49 KLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDD----NAKLA-------KERDSLAMTARNLSRDL 117 (340)
Q Consensus 49 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de----~~kL~-------~E~~sLa~TvKKL~RDv 117 (340)
+++..+.+++... |-......||+++..++.-+.++....+.+--- ++-|- +.-..|-+.|++||..|
T Consensus 381 ~i~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (471)
T 3mq9_A 381 RITAARDGLRAVM-EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKL 459 (471)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHH-HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433 333455566666666666666655543322111 11111 22345666677777666
Q ss_pred HHHHH
Q 019459 118 AKLET 122 (340)
Q Consensus 118 aKLE~ 122 (340)
..+++
T Consensus 460 ~~~~~ 464 (471)
T 3mq9_A 460 QDASA 464 (471)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 79
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=78.88 E-value=5 Score=38.72 Aligned_cols=49 Identities=22% Similarity=0.137 Sum_probs=37.6
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
+.-++++|..|+.+|...+...+..|..|++.+.+++..+++...++..
T Consensus 3 ~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~ 51 (323)
T 1lwu_C 3 GQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVD 51 (323)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557888888998888888888888888888888877777766655544
No 80
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=78.76 E-value=2.4 Score=37.27 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=26.3
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 48 SKLETETGTMRQMLYEKDRLICELEERLSHVQK 80 (340)
Q Consensus 48 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~ 80 (340)
..||..+..|...|..|+..|.+|++|+..+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 35 (198)
T 4ghu_A 3 GLLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 367888888888888888888888888776654
No 81
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=78.38 E-value=23 Score=27.90 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=21.1
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQ 79 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le 79 (340)
....++.++..|+....+-...|.+|++.+..++
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455566666666666666666666666666654
No 82
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=78.10 E-value=28 Score=28.88 Aligned_cols=60 Identities=25% Similarity=0.353 Sum_probs=43.9
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHH
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEERLSHVQK-------VYQEADSKLKIFIDDNAKLAKERD 104 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~-------~L~e~~~rl~~a~de~~kL~~E~~ 104 (340)
+-++.|+.|+..||..-..-...|.+|+-.-..||+ .|.|...|+++|++.|+=|..|-+
T Consensus 35 ~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 35 KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347778888888887666666666666655555554 578888999999999988876644
No 83
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=77.93 E-value=2.7 Score=41.17 Aligned_cols=54 Identities=15% Similarity=0.197 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019459 53 ETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNL 113 (340)
Q Consensus 53 E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL 113 (340)
++..|+.++.+-.+...+|++++..++..+.+..++|.. ...+|..|-|++..|
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~rr~l~n~~~el 57 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIK-------EETVRRTLHNELQEL 57 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHc
Confidence 344555555555555555555555555555555544433 444555555554444
No 84
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=77.81 E-value=11 Score=26.97 Aligned_cols=43 Identities=21% Similarity=0.372 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 70 ELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 70 ~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
+|+++|..||..|.-...|+.+ |.-|-. .+-.||.+-|.+||.
T Consensus 2 dlEekv~~Le~~ld~LqTr~Ar-------Llae~~---ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFAR-------LLAEYN---ATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHH---HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH-------HHHHHH---HHHHHHHHHHHHHHh
Confidence 6899999999999999999876 555443 456788888888886
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=77.59 E-value=13 Score=35.95 Aligned_cols=34 Identities=6% Similarity=0.006 Sum_probs=20.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 89 LKIFIDDNAKLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 89 l~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
..+-++..+++++|++.....+++..+++.+|+.
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (487)
T 3oja_A 416 VKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAE 449 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHH
Confidence 3334445566666666666666666666666554
No 86
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=77.47 E-value=18 Score=28.48 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=20.3
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 41 MAIASRVSKLETETGTMRQMLYEKDRLICELEERLS 76 (340)
Q Consensus 41 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~ 76 (340)
.-+..++..|..|+++||-++.+-...+..|++|-.
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334555555666666666666555555555555544
No 87
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=77.39 E-value=14 Score=28.87 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=35.8
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSL 106 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sL 106 (340)
.+.+..||.-++.+.... ...+.+++..+..+|.+|+++.+.+..-+.|-..|.+=|-.|
T Consensus 9 ~~q~~~Le~~l~e~E~~~---~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~L 68 (86)
T 1x8y_A 9 QCQLAAKEAKLRDLEDSL---ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLAL 68 (86)
T ss_dssp ---CTTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455665555555543 345677888888888888888887776555544444444333
No 88
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=77.13 E-value=3.7 Score=37.54 Aligned_cols=39 Identities=21% Similarity=0.349 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019459 93 IDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSL 131 (340)
Q Consensus 93 ~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 131 (340)
++||.+.++--+.|-..+..+.+.+.+|+..|+.||+.|
T Consensus 378 l~eQ~~I~~~l~~ld~~i~~~~~~~~~l~~~k~~Ll~~l 416 (425)
T 1yf2_A 378 LEEQKQIAKILSSVDKSIELKKQKKEKLQRMKKKIMELL 416 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666766666777777888889999999999999976
No 89
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=76.46 E-value=26 Score=43.11 Aligned_cols=11 Identities=27% Similarity=0.610 Sum_probs=6.0
Q ss_pred HHHhhccccCC
Q 019459 126 QLMQSLNDDNS 136 (340)
Q Consensus 126 ~LmqSLqeD~~ 136 (340)
.|+.+|..|..
T Consensus 2077 ~Li~gL~~Ek~ 2087 (3245)
T 3vkg_A 2077 ALLDNLNSERG 2087 (3245)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhhhhccc
Confidence 35666655544
No 90
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=76.11 E-value=21 Score=28.31 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 69 CELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 69 ~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
..|+.||..+=..+.-..-.+..-.++|..|..|+..+.+....|.++..+|.
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk 61 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLK 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34444444333333333333333444555555555555555555666666554
No 91
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.69 E-value=25 Score=30.79 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=13.2
Q ss_pred HHhhhhHhHHHHHHHHHH
Q 019459 45 SRVSKLETETGTMRQMLY 62 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~la 62 (340)
.|.+.||.+...+|..|.
T Consensus 13 n~qs~LeD~L~~~R~el~ 30 (154)
T 2ocy_A 13 DKQSHLEEQLNKSLKTIA 30 (154)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHH
Confidence 466777777777777775
No 92
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=75.41 E-value=4.3 Score=37.04 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019459 93 IDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSL 131 (340)
Q Consensus 93 ~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 131 (340)
++||.+.++--+.|-..+.++.+-+++|+..|++||+.+
T Consensus 168 l~EQ~~I~~~l~~ld~~i~~~~~~i~~l~~~k~~l~~~~ 206 (425)
T 1yf2_A 168 LEEQKQIAKILTKIDEGIEIIEKSINKLERIKKGLMHKL 206 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777888888888999999999999999987
No 93
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=74.76 E-value=5 Score=31.94 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019459 53 ETGTMRQMLYEKDRLICELEERL 75 (340)
Q Consensus 53 E~~~LR~~laEKd~~i~~Lq~r~ 75 (340)
|+..|+++|.+||..|.-|+.++
T Consensus 55 El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 55 EVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 45556666666666655555554
No 94
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=73.80 E-value=32 Score=27.40 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHH
Q 019459 97 AKLAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 97 ~kL~~E~~sLa~TvKKL~RDvaKL 120 (340)
.-+.+|+++|-+...--...|.||
T Consensus 70 ~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 70 LELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666555555555554
No 95
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=73.36 E-value=14 Score=28.72 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhccccC
Q 019459 104 DSLAMTARNLSRDLAKLETFKRQLMQSLNDDN 135 (340)
Q Consensus 104 ~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~ 135 (340)
+.|..+|-+.++.+++|+.-=+.|++-|.+-.
T Consensus 31 eeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 31 TELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666677777777777777777666544
No 96
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=72.55 E-value=13 Score=27.03 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 019459 59 QMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAK 98 (340)
Q Consensus 59 ~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~k 98 (340)
.++.+-.+.+..|.+|-..|...|.++.++|...-++..+
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666777777777788888877777653333333
No 97
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=72.44 E-value=9.1 Score=29.77 Aligned_cols=47 Identities=6% Similarity=0.142 Sum_probs=25.0
Q ss_pred HHHHhhhhHhHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEK-----D-RLICELEERLSHVQKVYQEADSKL 89 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEK-----d-~~i~~Lq~r~~~le~~L~e~~~rl 89 (340)
|=.++..||.++..|-.+|++= | ..+.+|..++..++..|.++-.|-
T Consensus 27 le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erW 79 (89)
T 2lw1_A 27 LPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERW 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666541 1 244555555555555555555554
No 98
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=71.92 E-value=8.2 Score=27.46 Aligned_cols=36 Identities=31% Similarity=0.490 Sum_probs=30.0
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEERLSHVQK 80 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~ 80 (340)
.-|..||.|-..|+.+-.-|..+|+-|++.+..|-.
T Consensus 10 nevaslenenetlkkknlhkkdliaylekeianlrk 45 (49)
T 3he5_A 10 NEVASLENENETLKKKNLHKKDLIAYLEKEIANLRK 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 457789999999999988999999999988876644
No 99
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=71.82 E-value=10 Score=37.26 Aligned_cols=29 Identities=28% Similarity=0.134 Sum_probs=14.0
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 48 SKLETETGTMRQMLYEKDRLICELEERLS 76 (340)
Q Consensus 48 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~ 76 (340)
..||.|+..||+++.+-++.|.++++.+.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~ 34 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELE 34 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555444444444444433
No 100
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=71.59 E-value=16 Score=28.60 Aligned_cols=51 Identities=20% Similarity=0.361 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 019459 69 CELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQ 129 (340)
Q Consensus 69 ~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~Lmq 129 (340)
.+|++||..||..|.-...|+.+ |.-|- ..+-.||.+-|.+||.+=+.+.-
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfAR-------LLaEy---~ssQ~KLKqRit~LE~~~~~~~~ 53 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFAR-------ILAEY---ESMQQKLKQRLTKVEKFLKPLID 53 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH-------HHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-------HHHHH---HHHHHHHHHHHHHHHHHhcccCC
Confidence 46899999999999999999977 55543 34667899999999997666443
No 101
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=70.98 E-value=18 Score=28.27 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019459 52 TETGTMRQMLYEKDRLICELEERLSH----VQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLS 114 (340)
Q Consensus 52 ~E~~~LR~~laEKd~~i~~Lq~r~~~----le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~ 114 (340)
+|+..|+.+.+.....+++++.++.. +...+....+.|.++..|-+....|-..|.+.=-+|-
T Consensus 3 ~eie~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le 69 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALD 69 (86)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 45666666666666666676665532 2333333334444444444444445455544433443
No 102
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=70.47 E-value=38 Score=27.89 Aligned_cols=69 Identities=17% Similarity=0.303 Sum_probs=39.9
Q ss_pred hhhHhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHhh
Q 019459 48 SKLETETGTMRQMLYEKD--------RLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTAR----NLSR 115 (340)
Q Consensus 48 s~LE~E~~~LR~~laEKd--------~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvK----KL~R 115 (340)
..||.|+++|.+.|...| ++.++|..-|..|-...+..=++-+. =..|....+...| +..-
T Consensus 16 ~tLe~Eta~L~~al~~edsd~E~~~~rilhdl~seV~~LK~dv~~~L~k~~~-------e~qe~~~FIKa~kvL~~rns~ 88 (101)
T 4aj5_1 16 STLDCETARLQRALDGEESDFEDYPMRILYDLHSEVQTLKDDINILLDKARL-------ENQEGIDFIKATKVLMEKNSM 88 (101)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHhHH
Confidence 469999999999998443 45667777777665544433333322 2233333333333 4445
Q ss_pred hHHHHHHH
Q 019459 116 DLAKLETF 123 (340)
Q Consensus 116 DvaKLE~F 123 (340)
|+.||..|
T Consensus 89 DI~~ire~ 96 (101)
T 4aj5_1 89 DIMKIREY 96 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777654
No 103
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=70.46 E-value=25 Score=27.69 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019459 62 YEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLS 114 (340)
Q Consensus 62 aEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~ 114 (340)
.|+.+++.+|+.-|...|..+-+..++|..+-+++..+..| |-.|..-|+
T Consensus 26 ~~~~~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~ee---LDqTL~ELn 75 (77)
T 3mtu_E 26 SERTEALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQM---LDQTLLELN 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---HHHHHHHhh
Confidence 47788889999999999999999999999888888888777 556665554
No 104
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=69.61 E-value=16 Score=26.48 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHH
Q 019459 99 LAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 99 L~~E~~sLa~TvKKL~RDvaKLE 121 (340)
|..||..|...|..|...++.|.
T Consensus 34 L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 34 LSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666554
No 105
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=69.61 E-value=6.9 Score=36.28 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019459 92 FIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSL 131 (340)
Q Consensus 92 a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 131 (340)
-++||.+..+--+.|-..+..+.+.+++|+.+|+.||+.|
T Consensus 353 pl~eQ~~I~~~l~~id~~i~~~~~~i~~L~~lk~~LL~~l 392 (406)
T 1ydx_A 353 SFQLQRKAGKIVFLLDQKLDQYKKELSSLTVIRDTLLKKL 392 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777888888999999999999999977
No 106
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=69.59 E-value=42 Score=26.90 Aligned_cols=60 Identities=18% Similarity=0.258 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019459 55 GTMRQMLYEKDRLICELEERLSHVQK-----VYQEADSKLKIFIDDNAKLAKERDSLAMTARNLS 114 (340)
Q Consensus 55 ~~LR~~laEKd~~i~~Lq~r~~~le~-----~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~ 114 (340)
..||+.+.+|.-.|..|.+.+..+.. .+.....-|.+|..|...|...-..|.+--++.|
T Consensus 25 ~~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~~av~g~E~RRIN 89 (90)
T 4b6x_A 25 AALRQEIEDKQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQRRFAVLRNEDRRIN 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 57899999998888877766554432 2333344455555555555554444444444433
No 107
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=69.36 E-value=42 Score=26.81 Aligned_cols=56 Identities=14% Similarity=0.158 Sum_probs=31.3
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNA 97 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~ 97 (340)
||+-+|..|-.|....-.+..+-...+.+++.+...+|..+...+-|+.+..+|..
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld 61 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRD 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 66666666666555555555555555555555555555555555555555444433
No 108
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=69.35 E-value=57 Score=31.38 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019459 68 ICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLS 114 (340)
Q Consensus 68 i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~ 114 (340)
..++|.....+.+.......+..+-.+|+++|.+|...+-..+.+-+
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
T 3oja_A 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASAN 469 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcc
Confidence 33333333333333344444444445566666666555555554433
No 109
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=68.41 E-value=43 Score=26.65 Aligned_cols=69 Identities=12% Similarity=0.131 Sum_probs=34.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019459 49 KLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDL 117 (340)
Q Consensus 49 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDv 117 (340)
.|+.++..|...=++--..+.+|++.-..++.+|......+.+-.++-.+.-+|.+.+..++--+..++
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~ 76 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDEL 76 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444455555555555555555555544555555566655555544444333
No 110
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=68.13 E-value=32 Score=29.99 Aligned_cols=35 Identities=14% Similarity=0.311 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019459 78 VQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARN 112 (340)
Q Consensus 78 le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKK 112 (340)
++..|..+..|+..+..-...|..|-..+.+.+|-
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKs 60 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKS 60 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33333344444443333333344433333333333
No 111
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=67.80 E-value=43 Score=26.35 Aligned_cols=78 Identities=13% Similarity=0.234 Sum_probs=53.2
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQE------------ADSKLKIFIDDNAKLAKERDSLAMTAR 111 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e------------~~~rl~~a~de~~kL~~E~~sLa~TvK 111 (340)
.-.|..|=.|+.++=..+.|+|....++..++..+=..+.. .-.++.....+-..|.+|+=.||+++-
T Consensus 10 ld~ie~LP~El~r~~~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~l~~I~~~~~~~~~l~dEKv~lA~~~~ 89 (104)
T 4afl_A 10 LDSIENLPFELQRNFQLMRDLDQRTEDLKAEIDKLATEYMSSARSLSSEEKLALLKQIQEAYGKCKEFGDDKVQLAMQTY 89 (104)
T ss_dssp HHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888899999999999998888888877665444432 224555666667778888888887653
Q ss_pred H-HhhhHHHHH
Q 019459 112 N-LSRDLAKLE 121 (340)
Q Consensus 112 K-L~RDvaKLE 121 (340)
- +.|-+.+|+
T Consensus 90 dlvdkhirrLD 100 (104)
T 4afl_A 90 EMVDKHIRRLD 100 (104)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 3 234444444
No 112
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=67.76 E-value=13 Score=27.42 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHH
Q 019459 98 KLAKERDSLAMTARNLSRDLAKLETF 123 (340)
Q Consensus 98 kL~~E~~sLa~TvKKL~RDvaKLE~F 123 (340)
.|.+||..|...|..|...++.|..+
T Consensus 34 ~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 34 QLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777766543
No 113
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=67.72 E-value=22 Score=26.98 Aligned_cols=41 Identities=27% Similarity=0.417 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 75 LSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 75 ~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
+-++-.+|.-+.+|+-+ |-|-|++|..-++.|++.+.+|-+
T Consensus 15 ylevK~ALaaSeAkiQQ-------LmkVN~~ls~Elr~mQ~~lq~LQs 55 (63)
T 2w6a_A 15 YLELKKALATSEAKVQQ-------LMKVNSSLSDELRKLQREIHKLQA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHH-------HHHHhHhhhHHHHHHHHHHHHHHh
Confidence 33456677777788877 777788888888888887777754
No 114
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=67.29 E-value=7.6 Score=33.59 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=26.4
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 47 VSKLETETGTMRQMLYEKDRLICELEERLSHVQK 80 (340)
Q Consensus 47 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~ 80 (340)
+..||..+.++..+++.++..|++|+.|+..+|.
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 2 TGLLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3467888888888888888888888888776664
No 115
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=67.10 E-value=31 Score=24.48 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019459 74 RLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 74 r~~~le~~L~e~~~rl~~ 91 (340)
++......+.++..++..
T Consensus 20 ~~~~~~~~~~~~k~~~~~ 37 (60)
T 3htk_A 20 KCSLKTDEFLKAKEKINE 37 (60)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 116
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=66.97 E-value=8.5 Score=35.69 Aligned_cols=39 Identities=10% Similarity=0.154 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019459 93 IDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSL 131 (340)
Q Consensus 93 ~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 131 (340)
++||.+.++--+.+-..+.++.+-+++|+.+|+.||+.+
T Consensus 166 l~eQ~~I~~~l~~~d~~i~~~~~~~~~l~~~k~~l~~~~ 204 (406)
T 1ydx_A 166 KNEQHAIANTLSVFDERLENLASLIEINRKLRDEYAHKL 204 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666677777778888889999999999876
No 117
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=65.87 E-value=11 Score=28.94 Aligned_cols=65 Identities=8% Similarity=0.065 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 56 TMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 56 ~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
.+=.+|...|.+++.|.+++..||.++.....+..... +-..|-++|=.|-..+-.+-+...+-+
T Consensus 7 d~I~~Lk~~d~~f~~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~lL~~~~~~~ 71 (76)
T 1zhc_A 7 DEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSMIIEYREKQ 71 (76)
T ss_dssp HHHHHSTTTSTTHHHHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 33455667788999999999999999988877655444 777788888777776666655544433
No 118
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=65.07 E-value=23 Score=25.03 Aligned_cols=28 Identities=32% Similarity=0.289 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 59 QMLYEKDRLICELEERLSHVQKVYQEAD 86 (340)
Q Consensus 59 ~~laEKd~~i~~Lq~r~~~le~~L~e~~ 86 (340)
++..+.+..+++|++||+.|+.+=+-..
T Consensus 10 ~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 10 NRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3445667778899999998887654433
No 119
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=64.96 E-value=33 Score=28.51 Aligned_cols=30 Identities=23% Similarity=0.178 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 019459 67 LICELEERLSHVQKVYQEADSKLKIFIDDN 96 (340)
Q Consensus 67 ~i~~Lq~r~~~le~~L~e~~~rl~~a~de~ 96 (340)
-|.+||+.+...|.+|..|.+||..|.+.-
T Consensus 36 ~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~ 65 (107)
T 2k48_A 36 TLQELQENITAHEQQLVTARQKLKDAEKAV 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478899999999999999999999988654
No 120
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=64.28 E-value=49 Score=25.79 Aligned_cols=60 Identities=13% Similarity=0.242 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019459 60 MLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQ 126 (340)
Q Consensus 60 ~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~ 126 (340)
.+..++..+..|++.+...+....+...+... |..|++.|..++.-..--+++|..=|..
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~~~~-------l~~ek~~L~~ql~eaEe~~~~L~~~K~e 74 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVT-------LLEQKNDLFGSMKQLEDKVEELLSKNYH 74 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34556666777777776666666666665555 6666666655533333333444444433
No 121
>1ztm_A Fusion glycoprotein; fusion protein, 6-helix bundle,trimer, post-fusion, viral PR; HET: NAG; 3.05A {Human parainfluenza virus 3}
Probab=64.27 E-value=20 Score=36.56 Aligned_cols=77 Identities=9% Similarity=0.233 Sum_probs=46.8
Q ss_pred hHHH--HHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019459 32 LDLA--RKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMT 109 (340)
Q Consensus 32 LdlA--rkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~T 109 (340)
|.|| ..||+-+--.+....++++.+||..+..-.+.+.+|+.-+..+=.+++...+-+ |+.|.-+
T Consensus 102 LGVataaqiTAavAl~qa~~na~~I~~lk~si~~tn~Av~~l~~g~~~l~~av~~lQd~I-------------N~~i~Pa 168 (490)
T 1ztm_A 102 LGVATSAQITAAVALVEAKQARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIKSVQDYV-------------NKEIVPS 168 (490)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHhhhh
Confidence 6677 889998888999999999999999999999999999999998888887766665 5567777
Q ss_pred HHHHhhhHHHHH
Q 019459 110 ARNLSRDLAKLE 121 (340)
Q Consensus 110 vKKL~RDvaKLE 121 (340)
+.+|..+++-+.
T Consensus 169 In~l~C~v~~~~ 180 (490)
T 1ztm_A 169 IARLGCEAAGLQ 180 (490)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhcccHhHHHH
Confidence 888888777543
No 122
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=63.90 E-value=24 Score=26.20 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 33 DLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKV 81 (340)
Q Consensus 33 dlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~ 81 (340)
....+|++. ...-|..+..+++.+-++...-.+.|.-|+.|++.+|..
T Consensus 16 ~~lEnIv~~-l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~~~ 63 (65)
T 3m0d_C 16 RVFENIVAV-LNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQQT 63 (65)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-HhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Confidence 344566664 555566666666666333333356666677777766654
No 123
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=63.63 E-value=85 Score=28.31 Aligned_cols=72 Identities=14% Similarity=0.155 Sum_probs=40.7
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019459 47 VSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQ 126 (340)
Q Consensus 47 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~ 126 (340)
+..|+.+...|..+.......+.+|.+++. .... +|-..|.+-+..=|-=||--=+|+..+++.
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE--------------~~v~--~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~ 197 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFE--------------KAVS--AKEALETDLYKRFILVLNEKKTKIRSLHNK 197 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 345666666665554444444444443333 2221 334446666666666666666777778777
Q ss_pred HHhhcccc
Q 019459 127 LMQSLNDD 134 (340)
Q Consensus 127 LmqSLqeD 134 (340)
|.+..|+.
T Consensus 198 Ll~~~~~~ 205 (213)
T 1ik9_A 198 LLNAAQER 205 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77766654
No 124
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=63.12 E-value=18 Score=26.27 Aligned_cols=39 Identities=15% Similarity=0.282 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019459 63 EKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAM 108 (340)
Q Consensus 63 EKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~ 108 (340)
-|...+.+|+.++..|+..-.+....+.. |..|...|-+
T Consensus 19 rKk~~~~~Le~~~~~L~~~n~~L~~~i~~-------L~~e~~~Lk~ 57 (61)
T 1t2k_D 19 KRKVWVQSLEKKAEDLSSLNGQLQSEVTL-------LRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 45667889999999888877777766655 5555555543
No 125
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=63.00 E-value=8.4 Score=26.11 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=22.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 019459 88 KLKIFIDDNAKLAKERDSLAMTARNLSR 115 (340)
Q Consensus 88 rl~~a~de~~kL~~E~~sLa~TvKKL~R 115 (340)
|++|.+|--+.|..+|.-|.+.|.+|..
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5677777778899999999998888754
No 126
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=62.92 E-value=32 Score=28.65 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019459 62 YEKDRLICELEERLSHVQKVYQEADSKLKIFI----DDNAKLAKERDSLAMTARNLSRDLAK 119 (340)
Q Consensus 62 aEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~----de~~kL~~E~~sLa~TvKKL~RDvaK 119 (340)
.+=...+..|.+++...|..|.+......++. +.-.+|+..|..+..-+.+|++|-.-
T Consensus 41 E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~ 102 (112)
T 1x79_B 41 EDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDS 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 33345677788888888877777776665543 34467777777777777777776543
No 127
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=62.77 E-value=22 Score=34.94 Aligned_cols=37 Identities=8% Similarity=-0.002 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 53 ETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKL 89 (340)
Q Consensus 53 E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl 89 (340)
|...|+..|.+..+.+.+|++++..+..++.+..++|
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555554444444444443
No 128
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=62.75 E-value=14 Score=28.68 Aligned_cols=49 Identities=29% Similarity=0.266 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 66 RLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 66 ~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
..|.+|+.|++-.|..+.+.++-+.. .+++-+.|...++.|...+..++
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~-------Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALAD-------ARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566666666666666666666644 55555555555555555554444
No 129
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=62.68 E-value=46 Score=25.71 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 60 MLYEKDRLICELEERLSHVQKVYQE 84 (340)
Q Consensus 60 ~laEKd~~i~~Lq~r~~~le~~L~e 84 (340)
.|..=...|..|+.++..|+..|.+
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344444455555555555554443
No 130
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=62.51 E-value=8.7 Score=27.96 Aligned_cols=26 Identities=42% Similarity=0.540 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019459 93 IDDNAKLAKERDSLAMTARNLSRDLA 118 (340)
Q Consensus 93 ~de~~kL~~E~~sLa~TvKKL~RDva 118 (340)
+.+|++|.++-.+|..-+-.|.|||+
T Consensus 30 endnanlekdianlekdianlerdva 55 (56)
T 3he4_A 30 ENDNANLEKDIANLEKDIANLERDVA 55 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccchHHHHHHHHHHHHHHHHHhhc
Confidence 34666677766666666666666665
No 131
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=62.48 E-value=18 Score=28.76 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhhhHhHHHHHHHHHH
Q 019459 36 RKITSMAIASRVSKLETETGTMRQMLY 62 (340)
Q Consensus 36 rkIts~A~atRVs~LE~E~~~LR~~la 62 (340)
+|.-.+.+..||..||.|-..||.++.
T Consensus 34 rk~r~~e~~~r~~~Le~EN~~Lr~~v~ 60 (87)
T 1hjb_A 34 AKMRNLETQHKVLELTAENERLQKKVE 60 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555544444
No 132
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=62.14 E-value=57 Score=28.07 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 019459 52 TETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAK 119 (340)
Q Consensus 52 ~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaK 119 (340)
.=+++|.+.+.++..++..|+ ++..-....+.+.++..+|...-.+.|+.+.++|..
T Consensus 86 eYn~rL~~E~~dR~~L~~~L~-----------~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~ 142 (152)
T 4fla_A 86 EYNGRLAAELEDRRQLARMLV-----------EYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKS 142 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444 444444444555555566677777777777766644
No 133
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=61.95 E-value=34 Score=32.20 Aligned_cols=83 Identities=14% Similarity=0.232 Sum_probs=42.0
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHhhhHHHH
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAK----LAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~k----L~~E~~sLa~TvKKL~RDvaKL 120 (340)
..|..+|.++..|+..|..=-.... ++...-.++..+...+..++.+... +......+..++++...-+..|
T Consensus 21 ~~l~~~E~~~~~l~~~l~kl~k~~~----~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~v~~~l~~f~~~~~ei 96 (385)
T 2q13_A 21 SLLGVFEEDATAISNYMNQLYQAMH----RIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDEL 96 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTTTTSCCCC---CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHHHHHH
Confidence 4567778888887777654332222 2222223333444444444444332 1222233445566666666666
Q ss_pred HHHHHHHHhhc
Q 019459 121 ETFKRQLMQSL 131 (340)
Q Consensus 121 E~FKk~LmqSL 131 (340)
+.+++.|++.+
T Consensus 97 ~~~~~~l~~~~ 107 (385)
T 2q13_A 97 SSCHAVLSTQL 107 (385)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665554
No 134
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=61.92 E-value=72 Score=26.88 Aligned_cols=25 Identities=8% Similarity=0.133 Sum_probs=20.3
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDR 66 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~ 66 (340)
.|.+++..||+|...|.++=.++-.
T Consensus 6 ~V~s~l~~LEaeyq~L~~kE~qryn 30 (119)
T 2avr_X 6 SLVGELQALDAEYQNLANQEEARFN 30 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999887665533
No 135
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=61.87 E-value=55 Score=25.54 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhhhHHHH
Q 019459 103 RDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 103 ~~sLa~TvKKL~RDvaKL 120 (340)
|..+-+.+..|.+||.-+
T Consensus 44 R~~~E~d~~~LrkdvD~a 61 (86)
T 3swk_A 44 REEAENTLQSFRQDVDNA 61 (86)
T ss_dssp HHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHhhHHHH
Confidence 445555556666666543
No 136
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=61.68 E-value=6.9 Score=36.76 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=26.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 86 DSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 86 ~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
..|++....+...|...|.-|..+.|.+.++|.+|..
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~Lke 89 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALRE 89 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666667777777788888888887777644
No 137
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=61.17 E-value=36 Score=24.75 Aligned_cols=35 Identities=9% Similarity=0.142 Sum_probs=13.9
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEERLSHVQ 79 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le 79 (340)
.-|..+..+++.+.++...-...|+.|+.++..||
T Consensus 26 ~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~ 60 (66)
T 3m0a_A 26 REVERVAMTAEACSRQHRLDQDKIEALSSKVQQLE 60 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHH
Confidence 33333334444333333333334444444444444
No 138
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=60.73 E-value=32 Score=24.90 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHH
Q 019459 96 NAKLAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 96 ~~kL~~E~~sLa~TvKKL~RDvaKL 120 (340)
|.+|++--..--..+.+|.-+|+||
T Consensus 25 N~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 25 NSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444334444444444444443
No 139
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=60.59 E-value=60 Score=33.65 Aligned_cols=17 Identities=29% Similarity=0.280 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhccccCC
Q 019459 120 LETFKRQLMQSLNDDNS 136 (340)
Q Consensus 120 LE~FKk~LmqSLqeD~~ 136 (340)
-|..-|+|.|-.--|-.
T Consensus 178 Y~~~QKQLeQv~a~dL~ 194 (562)
T 3ghg_A 178 YEDQQKQLEQVIAKDLL 194 (562)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhhcccC
Confidence 46677888887655543
No 140
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=60.26 E-value=36 Score=32.33 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=11.2
Q ss_pred HHhhhhHhHHHHHHHHHHH
Q 019459 45 SRVSKLETETGTMRQMLYE 63 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laE 63 (340)
..|..+|.++..|+..|..
T Consensus 44 a~l~~~E~~~~~l~~~l~k 62 (407)
T 4h8s_A 44 SLLSVFEEDAGTLTDYTNQ 62 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456666666666655543
No 141
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=60.06 E-value=73 Score=26.35 Aligned_cols=73 Identities=10% Similarity=0.151 Sum_probs=46.8
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019459 41 MAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNL 113 (340)
Q Consensus 41 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL 113 (340)
.|+..|..+...-++.+-..++--...|.-=-.++....++||+.++||+--......=-+|-..+++.+-.|
T Consensus 16 ~~~~~~~~ri~~aig~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaL 88 (114)
T 2xzr_A 16 YHIENEIARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEI 88 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHhhhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777777777777777777777777777778888888888888653322222233334444444443
No 142
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=60.03 E-value=74 Score=26.45 Aligned_cols=75 Identities=20% Similarity=0.250 Sum_probs=45.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHhhhHHH-HHHHH
Q 019459 51 ETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFID-----DNAKLAKERDSLAMTARNLSRDLAK-LETFK 124 (340)
Q Consensus 51 E~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~d-----e~~kL~~E~~sLa~TvKKL~RDvaK-LE~FK 124 (340)
+.|...||..|-==+..| .++.-++.+|.-+.+++..... +..+...++..|...+||+.|-|.| ++.++
T Consensus 23 ~~ELeSlK~EL~HfE~rl----~K~rH~~~el~l~~~k~~~~~~~g~~e~~s~~~ek~~~le~k~Kk~~~kV~Kl~~dl~ 98 (109)
T 2fcw_A 23 DKELEAFREELKHFEAKI----EKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDLS 98 (109)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666887775333332 3444555555555455544332 2334455678888888888888888 45666
Q ss_pred HHHHh
Q 019459 125 RQLMQ 129 (340)
Q Consensus 125 k~Lmq 129 (340)
..+|+
T Consensus 99 ~rI~~ 103 (109)
T 2fcw_A 99 GRISR 103 (109)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66665
No 143
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=59.95 E-value=27 Score=32.06 Aligned_cols=14 Identities=7% Similarity=0.131 Sum_probs=5.6
Q ss_pred hhhHhHHHHHHHHH
Q 019459 48 SKLETETGTMRQML 61 (340)
Q Consensus 48 s~LE~E~~~LR~~l 61 (340)
..+++++..++.+|
T Consensus 73 ~~~~a~l~~~~a~l 86 (369)
T 4dk0_A 73 NTRKAALASYQAQL 86 (369)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 144
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=59.66 E-value=22 Score=26.26 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHH
Q 019459 97 AKLAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 97 ~kL~~E~~sLa~TvKKL~RDvaKL 120 (340)
..|.+||+.|-..|..|.+.+.-|
T Consensus 33 ~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 33 KELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666666666666665
No 145
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=59.30 E-value=71 Score=25.99 Aligned_cols=13 Identities=31% Similarity=0.521 Sum_probs=5.2
Q ss_pred hHHHHHHHHHHHH
Q 019459 116 DLAKLETFKRQLM 128 (340)
Q Consensus 116 DvaKLE~FKk~Lm 128 (340)
.++-|+.=|..||
T Consensus 90 ~~~~l~~Ek~~L~ 102 (107)
T 2no2_A 90 EFAELEKERDSLV 102 (107)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444443
No 146
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=59.06 E-value=45 Score=23.62 Aligned_cols=35 Identities=14% Similarity=0.069 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019459 67 LICELEERLSHVQKVYQEADSKLKIFIDDNAKLAK 101 (340)
Q Consensus 67 ~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~ 101 (340)
.+..+..++..+...|-.+...|+.+.++..+|..
T Consensus 20 ~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~ 54 (60)
T 3htk_A 20 KCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444445444444444433
No 147
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=58.01 E-value=33 Score=34.73 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019459 94 DDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSLN 132 (340)
Q Consensus 94 de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLq 132 (340)
++...|..|-..|...+|.|...+..+|.=-..++.+|-
T Consensus 71 ~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iP 109 (485)
T 3qne_A 71 EDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVG 109 (485)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 445567777778888888888888888777777777773
No 148
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.34 E-value=80 Score=25.99 Aligned_cols=90 Identities=9% Similarity=0.114 Sum_probs=51.4
Q ss_pred hHHHHHHHHH--HHHHHhhhhHhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----H
Q 019459 32 LDLARKITSM--AIASRVSKLETET---------GTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFID-----D 95 (340)
Q Consensus 32 LdlArkIts~--A~atRVs~LE~E~---------~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~d-----e 95 (340)
-+|...|.++ -|-+-|+.|+.-+ ..||.+|.+..+.+.+|=+..+..=..|.....-.....+ .
T Consensus 13 ~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~~r~~k~q 92 (130)
T 2dnx_A 13 SSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRLQ 92 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 3455555543 2445588888765 6678888777777777766666554444442100000011 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 96 NAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 96 ~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
.+||.+|=....+.-.+++|.++.-|
T Consensus 93 ~~KL~~dF~~~L~~FQ~~Qr~~aeke 118 (130)
T 2dnx_A 93 KERLMNDFSAALNNFQAVQRRVSEKE 118 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666777666555
No 149
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=57.24 E-value=12 Score=25.41 Aligned_cols=28 Identities=21% Similarity=0.153 Sum_probs=22.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 019459 88 KLKIFIDDNAKLAKERDSLAMTARNLSR 115 (340)
Q Consensus 88 rl~~a~de~~kL~~E~~sLa~TvKKL~R 115 (340)
|++|.+|.-+.|.+++.-|++.|.+|..
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5677777778899999999988877753
No 150
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=57.08 E-value=14 Score=24.41 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 98 KLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 98 kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
.|.+|-..|..-|.||+.-|++||.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777888888999998988885
No 151
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=56.86 E-value=38 Score=26.06 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019459 66 RLICELEERLSHVQKVYQEADSKLKIFIDDNAKLA 100 (340)
Q Consensus 66 ~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~ 100 (340)
+...+++..+..||.+|+++.+.+..-+.|-..|.
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~Ll 39 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELL 39 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888888887777766444433333
No 152
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=56.83 E-value=64 Score=25.38 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 019459 67 LICELEERLSHVQKVYQEADSKLKIFIDDN 96 (340)
Q Consensus 67 ~i~~Lq~r~~~le~~L~e~~~rl~~a~de~ 96 (340)
-|.+||+-+...|.+|..|.+||..|.+.-
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~ 35 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAV 35 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999999988654
No 153
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=56.81 E-value=22 Score=33.02 Aligned_cols=50 Identities=22% Similarity=0.175 Sum_probs=32.2
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
++-+||..+|.-+..|-..+.|=.......++|+-.++..|.|..++.++
T Consensus 3 ~lnsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iRr 52 (233)
T 2yko_A 3 SLRSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVKR 52 (233)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34567777777777777777776666666777777777777776666654
No 154
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=56.48 E-value=56 Score=27.35 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 019459 67 LICELEERLSHVQKVYQEADSKLKIFIDDNA--------KLAKERDSLAMTARNLSRDLAKLETFKRQLMQSL 131 (340)
Q Consensus 67 ~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~--------kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSL 131 (340)
-|.+||+-+...|.+|..|.+||..|.+.-+ .-..-|..-+.++ . +||--|||+|--..
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~l---q---~KiaeLKrqLAd~v 89 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSI---Q---AKIDELKRQLADRI 89 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHH
Confidence 4789999999999999999999999886542 2223333333322 2 46666777765443
No 155
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=56.41 E-value=1.2e+02 Score=30.52 Aligned_cols=67 Identities=15% Similarity=0.075 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHH-HHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 56 TMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFI----DDN-AKLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 56 ~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~----de~-~kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
.|..++.+++..+-++...|......|.+....+.... ..+ ..|...-+.|...|.+|...|..+..
T Consensus 125 ~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~ 196 (464)
T 1m1j_B 125 MIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQTD 196 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666655555554444444333333222 222 23344555666777777777665543
No 156
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=56.29 E-value=25 Score=28.17 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019459 67 LICELEERLSHVQKVYQEADSKL 89 (340)
Q Consensus 67 ~i~~Lq~r~~~le~~L~e~~~rl 89 (340)
.|..|+.+...||..|.++.+++
T Consensus 13 ~~~~Lq~~~~~LE~~l~e~E~~~ 35 (95)
T 3mov_A 13 LYFQGQKESRACLERIQELEDLL 35 (95)
T ss_dssp -----CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 157
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=56.04 E-value=12 Score=25.67 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=23.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019459 88 KLKIFIDDNAKLAKERDSLAMTARNLSRDLA 118 (340)
Q Consensus 88 rl~~a~de~~kL~~E~~sLa~TvKKL~RDva 118 (340)
|++|.++.-+.|..||.-|.+.|.+|..-|.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 5667777778888899888888888765544
No 158
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=55.72 E-value=72 Score=25.98 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 37 KITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHV 78 (340)
Q Consensus 37 kIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~l 78 (340)
|...--++.....||+-...||.+-+++...|.+||.|+...
T Consensus 17 K~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~ 58 (101)
T 1d7m_A 17 KVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDET 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445666778888999999999999999999999997643
No 159
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=55.21 E-value=37 Score=27.09 Aligned_cols=52 Identities=19% Similarity=0.209 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019459 69 CELEERLSHVQKVYQEADSKLK-----IFIDDNAKLAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 69 ~~Lq~r~~~le~~L~e~~~rl~-----~a~de~~kL~~E~~sLa~TvKKL~RDvaKL 120 (340)
+.|++++..|+.+++++.+.|+ ....+.++|..|-+-+-...-.|-.-+|-+
T Consensus 11 ~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~ 67 (85)
T 3viq_B 11 HLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVAEH 67 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433 346677788888877776666665555544
No 160
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=55.16 E-value=18 Score=26.39 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHH
Q 019459 99 LAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 99 L~~E~~sLa~TvKKL~RDvaKL 120 (340)
|..||+.|...|..|...++.|
T Consensus 34 L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 34 LKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666777776666655
No 161
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.93 E-value=57 Score=28.01 Aligned_cols=48 Identities=17% Similarity=0.293 Sum_probs=35.9
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKL 89 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl 89 (340)
++.+.++..+.|+.+|...|.+-...-.+.+.+...++.+|-+.++-|
T Consensus 36 ~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 36 TLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp HHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334667778888888888888877777777777777777777776665
No 162
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=54.68 E-value=66 Score=26.24 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 019459 68 ICELEERLSHVQKVYQEADSKLKIFIDDNAK--------LAKERDSLAMTARNLSRDLAKLETFKRQLMQSLN 132 (340)
Q Consensus 68 i~~Lq~r~~~le~~L~e~~~rl~~a~de~~k--------L~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLq 132 (340)
|.+||+-+...|.+|..|.+||..|.+.-++ -..-|..- |+.|. +||--|||+|--...
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~---V~~lq---~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAA---VSALE---TKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH---HHHHH---HHHHHHHHHHHHHHh
Confidence 7889999999999999999999998865422 22222222 22232 466667777655443
No 163
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=54.59 E-value=24 Score=25.49 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 52 TETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLK 90 (340)
Q Consensus 52 ~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~ 90 (340)
+|+..||+.++ +|+.|+..|..++++..++|.
T Consensus 19 ~d~eaLk~E~~-------eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELA-------EMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHh
Confidence 56667776554 455555555555556666654
No 164
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=54.56 E-value=19 Score=23.73 Aligned_cols=28 Identities=7% Similarity=0.214 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 54 TGTMRQMLYEKDRLICELEERLSHVQKV 81 (340)
Q Consensus 54 ~~~LR~~laEKd~~i~~Lq~r~~~le~~ 81 (340)
++.|-..+++-+...++|+..|.+||.+
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4444445566667777888887777764
No 165
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=54.50 E-value=21 Score=27.25 Aligned_cols=38 Identities=13% Similarity=0.223 Sum_probs=20.8
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVY 82 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L 82 (340)
.+|..||.++..|......-...+..|+..+..|..+|
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666555544455555555555554444
No 166
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=54.42 E-value=42 Score=24.69 Aligned_cols=37 Identities=22% Similarity=0.156 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019459 63 EKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSL 106 (340)
Q Consensus 63 EKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sL 106 (340)
-|...+.+|+.++..|+..-.+...++.. |.+|+..|
T Consensus 20 KKk~~~~~le~~~~~L~~~N~~L~~~i~~-------L~~E~~~L 56 (63)
T 1ci6_A 20 KKRAEQEALTGECKELEKKNEALKERADS-------LAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 35556777777777777776666666655 66666555
No 167
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=54.28 E-value=6.9 Score=39.99 Aligned_cols=62 Identities=18% Similarity=0.245 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 019459 68 ICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQ 129 (340)
Q Consensus 68 i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~Lmq 129 (340)
-.+|++|+-+++.+...++..|..+.+-...|.+++...-.-.+.|.+....+|.-++.|..
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~ 398 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEE 398 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666655555555555555555555555555555555554444
No 168
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=54.21 E-value=17 Score=27.79 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 54 TGTMRQMLYEKDRLICELEERLSHVQ 79 (340)
Q Consensus 54 ~~~LR~~laEKd~~i~~Lq~r~~~le 79 (340)
++.|...|.+||+.|.+|+.++-.+.
T Consensus 27 I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 27 IKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555554444333
No 169
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=54.04 E-value=14 Score=24.97 Aligned_cols=27 Identities=0% Similarity=-0.055 Sum_probs=20.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019459 88 KLKIFIDDNAKLAKERDSLAMTARNLS 114 (340)
Q Consensus 88 rl~~a~de~~kL~~E~~sLa~TvKKL~ 114 (340)
|++|.+|.-+.|..||..|.+.|.+|.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 566666677788888888888877764
No 170
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=53.83 E-value=58 Score=25.72 Aligned_cols=29 Identities=14% Similarity=0.329 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhhhH-HHHHHHHHHH
Q 019459 99 LAKERDSLAMTARNLSRDL-AKLETFKRQL 127 (340)
Q Consensus 99 L~~E~~sLa~TvKKL~RDv-aKLE~FKk~L 127 (340)
+.++-+.|+..++++.+.+ .||+.+++..
T Consensus 48 ~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~ 77 (127)
T 1ez3_A 48 TKEELEELMSDIKKTANKVRSKLKSIEQSI 77 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555554 2455555443
No 171
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=53.54 E-value=29 Score=27.31 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 35 ARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQ 83 (340)
Q Consensus 35 ArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~ 83 (340)
|-.|+-+.+-.||-.|=.|-.-|+..+.--......++.|+..+|.+|.
T Consensus 27 aLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 27 ALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667777777777777777777777666667777777776666553
No 172
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=53.33 E-value=79 Score=26.31 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019459 97 AKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSLND 133 (340)
Q Consensus 97 ~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 133 (340)
.-|.+-.+.|...+++|..++++++.--+++...|++
T Consensus 101 ~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~ 137 (151)
T 2zdi_C 101 SFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQE 137 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555677788888888888888777777666543
No 173
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=53.23 E-value=62 Score=33.38 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=33.8
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADS 87 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~ 87 (340)
.=+...|.|..++|+.|.+-+..++.+|+|+...+..|++...
T Consensus 314 hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~ 356 (551)
T 2b5u_A 314 HPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKS 356 (551)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3467788899999999999999999999997755555544333
No 174
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=52.84 E-value=15 Score=30.47 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=12.5
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 48 SKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQE 84 (340)
Q Consensus 48 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e 84 (340)
++|.+|+..|++.+. .+..|+.+|..|+..|..
T Consensus 2 ~~l~~~~~~l~~~~~----~~~~l~~~~~~l~~~l~~ 34 (182)
T 3kqg_A 2 STLNAQIPELKSDLE----KASALNTKIRALQGSLEN 34 (182)
T ss_dssp -----------CHHH----HHHHHHHHHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 567788888888776 445555565555555543
No 175
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=52.49 E-value=37 Score=35.17 Aligned_cols=19 Identities=26% Similarity=0.316 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhhHHHHHH
Q 019459 104 DSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 104 ~sLa~TvKKL~RDvaKLE~ 122 (340)
+.|-+.|+.|--++.|||+
T Consensus 134 rvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 134 QLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666665
No 176
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=52.44 E-value=1.1e+02 Score=26.22 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019459 68 ICELEERLSHVQKVYQEADSKLKIFIDDNAKLAK 101 (340)
Q Consensus 68 i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~ 101 (340)
...|.+.|+..-.-|.+=+.||..-+++-.+|.+
T Consensus 70 ~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~ 103 (152)
T 4fla_A 70 AERLSKTVDEACLLLAEYNGRLAAELEDRRQLAR 103 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777665555555443
No 177
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=52.11 E-value=77 Score=25.38 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019459 62 YEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLA 118 (340)
Q Consensus 62 aEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDva 118 (340)
.|+.+++.+|+.-+...=.++.+.+.-- +||.-||+-|+-.--||-|+|-
T Consensus 22 serte~lqqlr~~y~s~~se~~dlt~s~-------ekl~ae~~dlivsnsklfrqig 71 (97)
T 1no4_A 22 SERTEALQQLRVNYGSFVSEYNDLTKSH-------EKLAAEKDDLIVSNSKLFRQIG 71 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHH-------HHHHhccCCeeeecHHHHHHhc
Confidence 4677888888888888877777766544 6799999999999899988875
No 178
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=52.00 E-value=66 Score=23.37 Aligned_cols=44 Identities=5% Similarity=0.006 Sum_probs=19.8
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKL 89 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl 89 (340)
+|..|.+++..|-.++..=...+..|+..+...-.+-..++.||
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444433344444444444444444455554
No 179
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=51.85 E-value=79 Score=24.28 Aligned_cols=20 Identities=15% Similarity=0.214 Sum_probs=7.8
Q ss_pred HHHhHHHHHHHHHHHHHHHH
Q 019459 89 LKIFIDDNAKLAKERDSLAM 108 (340)
Q Consensus 89 l~~a~de~~kL~~E~~sLa~ 108 (340)
|.++..|-+....|-..|.+
T Consensus 42 L~~~r~e~~~q~~EYq~Lln 61 (84)
T 1gk4_A 42 IQNMKEEMARHLREYQDLLN 61 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444443
No 180
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=51.60 E-value=17 Score=24.50 Aligned_cols=27 Identities=11% Similarity=0.094 Sum_probs=18.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019459 88 KLKIFIDDNAKLAKERDSLAMTARNLS 114 (340)
Q Consensus 88 rl~~a~de~~kL~~E~~sLa~TvKKL~ 114 (340)
|++|.++.-+.|..||..|.+-|.+|.
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345556666778888888888877764
No 181
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=51.48 E-value=46 Score=30.18 Aligned_cols=13 Identities=15% Similarity=0.164 Sum_probs=5.0
Q ss_pred hhHhHHHHHHHHH
Q 019459 49 KLETETGTMRQML 61 (340)
Q Consensus 49 ~LE~E~~~LR~~l 61 (340)
.+|+++..++.++
T Consensus 73 ~~~a~l~~~~a~l 85 (341)
T 3fpp_A 73 EVEATLMELRAQR 85 (341)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334433333333
No 182
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=51.32 E-value=19 Score=28.09 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhhhhHhHHHHHHHHHHH
Q 019459 36 RKITSMAIASRVSKLETETGTMRQMLYE 63 (340)
Q Consensus 36 rkIts~A~atRVs~LE~E~~~LR~~laE 63 (340)
+|.-.+.+..||..||.|-..||.++..
T Consensus 34 rk~r~~e~~~r~~~L~~eN~~L~~~v~~ 61 (78)
T 1gu4_A 34 AKMRNLETQHKVLELTAENERLQKKVEQ 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555544443
No 183
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=51.25 E-value=56 Score=27.35 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=40.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019459 30 DQLDLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSL 106 (340)
Q Consensus 30 EQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sL 106 (340)
+.+.-..+=++-.|..+....|.=|..|= +-+.-.++-.+|+..|+.++.++...+..+..+.++|.+.-+.+
T Consensus 53 ~~f~~~~~ela~dli~k~kqIe~LIdsLP----~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 125 (132)
T 1ykh_B 53 EEFSNTIDELSTDIILKTRQINKLIDSLP----GVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSM 125 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHST----TTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444344445555555554444433 22333344567788888888888888877555555555544433
No 184
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=51.04 E-value=64 Score=29.90 Aligned_cols=53 Identities=11% Similarity=0.179 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHH
Q 019459 66 RLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKE-RDSLAMTARNLSRDLAKLETFKR 125 (340)
Q Consensus 66 ~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E-~~sLa~TvKKL~RDvaKLE~FKk 125 (340)
+.+.+|++|+..++..+.+....|.. +.++ ...|..--..|....++.++..+
T Consensus 226 ~~l~~l~~~i~~l~~~l~~~~~~l~~-------~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 279 (357)
T 3rrk_A 226 KAAARMKERARLAPEELVGIREEVAR-------LSRESGEALIALWTRAKDEVARYKAVAD 279 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566666666666666666666654 5555 56676667777777777777654
No 185
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=50.95 E-value=26 Score=32.02 Aligned_cols=56 Identities=21% Similarity=0.236 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 019459 62 YEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFK 124 (340)
Q Consensus 62 aEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FK 124 (340)
.|+.++..+|+.-+.+.=.+++|.+... .+|+.|++.|-.-++||..|.+..=+|+
T Consensus 26 ~~~~~~~~~~~a~~~s~~s~~~dl~~s~-------~~l~ae~~~L~~~l~kLeGn~se~ITfe 81 (206)
T 3oa7_A 26 SERTEALQQLRVNYGSFVSEYNDLTKSH-------NTLSKELDNLRSRFGNLEGNTSERITIK 81 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCGGGCCCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHccCCHHhccCHH
Confidence 4777888888888888888888888777 4499999999999999999999866664
No 186
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=50.68 E-value=46 Score=28.63 Aligned_cols=69 Identities=14% Similarity=0.127 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019459 30 DQLDLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKE 102 (340)
Q Consensus 30 EQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E 102 (340)
+.+.-..+=++-.|..+....|.=|..|= +-+.-.++-.+|+..|+.++.++...+..+..+.++|.+.
T Consensus 53 ~~f~~~~~ela~dli~kakqIe~LIdsLP----g~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~ 121 (151)
T 1yke_B 53 EEFSNTIDELSTDIILKTRQINKLIDSLP----GVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRH 121 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCT----TSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433333333335555444444444332 2222334445677777777777777776655444444443
No 187
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=50.65 E-value=27 Score=25.93 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019459 62 YEKDRLICELEERLSHVQ 79 (340)
Q Consensus 62 aEKd~~i~~Lq~r~~~le 79 (340)
.-|..++.+|+.+|..|+
T Consensus 26 ~RK~~~~~~Le~~v~~L~ 43 (63)
T 2dgc_A 26 ARKLQRMKQLEDKVEELL 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346677888888887653
No 188
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=50.62 E-value=55 Score=32.46 Aligned_cols=40 Identities=10% Similarity=0.150 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019459 94 DDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSLND 133 (340)
Q Consensus 94 de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 133 (340)
++...|..|-..|...+|.|...+..+|.=-..+|.+|-+
T Consensus 69 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN 108 (455)
T 2dq0_A 69 EPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPN 108 (455)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4455677777778888888888888888777778877743
No 189
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=50.57 E-value=13 Score=28.92 Aligned_cols=49 Identities=27% Similarity=0.258 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019459 70 ELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLA 118 (340)
Q Consensus 70 ~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDva 118 (340)
+|.++++.+...+.-.++=|+-++..|++|.+.++-|-.-|++|.|+-.
T Consensus 19 el~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlERnqe 67 (71)
T 3bbp_D 19 ELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERNQE 67 (71)
T ss_dssp ----------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhHh
Confidence 4555666666666666667777777778888889889899999988743
No 190
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=50.56 E-value=98 Score=25.53 Aligned_cols=49 Identities=29% Similarity=0.393 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 019459 81 VYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQ 129 (340)
Q Consensus 81 ~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~Lmq 129 (340)
.+.+...++.++++|+..|.......-..|..|...|.+|-+=-..|.+
T Consensus 38 EYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 38 EYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445556777777788888877777777888888777777654444443
No 191
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=50.18 E-value=18 Score=24.51 Aligned_cols=27 Identities=11% Similarity=0.142 Sum_probs=18.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019459 88 KLKIFIDDNAKLAKERDSLAMTARNLS 114 (340)
Q Consensus 88 rl~~a~de~~kL~~E~~sLa~TvKKL~ 114 (340)
|++|.++--+.|..||..|.+.|.+|.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 455555666678888888887777664
No 192
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=49.85 E-value=39 Score=26.78 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 94 DDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 94 de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
..-..|.+||..|-..|..|..+|..|.
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345688888888888998988887664
No 193
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=49.83 E-value=31 Score=23.61 Aligned_cols=28 Identities=14% Similarity=0.401 Sum_probs=15.6
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEE 73 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~ 73 (340)
||++||.-+..|-.+..+=...++-|++
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 6777777776666555444333333333
No 194
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=49.79 E-value=1e+02 Score=31.67 Aligned_cols=38 Identities=18% Similarity=0.403 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 82 YQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 82 L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
++|.+--|.+-+.|+++|.+|- ..+.+++|+..+..|.
T Consensus 543 ~~e~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~ei~~l~ 580 (592)
T 1f5n_A 543 LKEQERTLALKLQEQEQLLKEG--FQKESRIMKNEIQDLQ 580 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 3444444444455555554443 4455666666655543
No 195
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=49.76 E-value=1.3e+02 Score=30.34 Aligned_cols=39 Identities=15% Similarity=-0.000 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019459 95 DNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSLND 133 (340)
Q Consensus 95 e~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 133 (340)
+...|..|-..|...+|.|...+..+|.=-..++.+|-+
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN 155 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPN 155 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344566677777777777777777777766677777743
No 196
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=49.75 E-value=1.3e+02 Score=26.16 Aligned_cols=23 Identities=35% Similarity=0.346 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHH
Q 019459 99 LAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 99 L~~E~~sLa~TvKKL~RDvaKLE 121 (340)
+..+-+.|..+.+.|.-+.+|||
T Consensus 85 ~ea~la~l~~~~~~LeAE~aKLe 107 (146)
T 2xnx_M 85 AKLELDQLSSEKEQLTIEKAKLE 107 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333334444444444444444
No 197
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=49.64 E-value=49 Score=32.84 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCC
Q 019459 102 ERDSLAMTARNLSRDLAKLETFKRQLMQSLNDDNSS 137 (340)
Q Consensus 102 E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~~~ 137 (340)
+...|...+|.|..++..||.--+.+-..|++--..
T Consensus 70 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (455)
T 2dq0_A 70 PVDELLAKSREIVKRIGELENEVEELKKKIDYYLWR 105 (455)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346777888888888888888877777777665443
No 198
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=49.45 E-value=68 Score=27.22 Aligned_cols=65 Identities=12% Similarity=0.229 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHH
Q 019459 52 TETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDL-AKLETFKRQL 127 (340)
Q Consensus 52 ~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDv-aKLE~FKk~L 127 (340)
.++..+|..|..=...+.+|++... ++..+-.+...+..+-+.|...++++.+.+ .+|+.+++..
T Consensus 43 ~~v~~I~~~i~~i~~~v~~l~~~~~-----------~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~ 108 (180)
T 1s94_A 43 EQVEEIRAMIDKISDNVDAVKKKHS-----------DILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNI 108 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 199
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=49.21 E-value=1.5e+02 Score=29.06 Aligned_cols=30 Identities=7% Similarity=-0.094 Sum_probs=12.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 50 LETETGTMRQMLYEKDRLICELEERLSHVQ 79 (340)
Q Consensus 50 LE~E~~~LR~~laEKd~~i~~Lq~r~~~le 79 (340)
++.++.++.+.+.+.-..+...+++|...-
T Consensus 134 ~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~c 163 (486)
T 3haj_A 134 AEDGFRKAQKPWAKKLKEVEAAKKAHHAAC 163 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444333
No 200
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=49.18 E-value=67 Score=23.37 Aligned_cols=42 Identities=14% Similarity=0.279 Sum_probs=32.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 49 KLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLK 90 (340)
Q Consensus 49 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~ 90 (340)
.||.|+.+|+..+.+=.+.+.+|-.=+..|-.+++.....++
T Consensus 1 ~le~~I~~Lk~ai~~TNeAV~~L~~g~~~la~Av~~iQ~~IN 42 (51)
T 3kpe_A 1 HLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYID 42 (51)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999988888888888877777776666555443
No 201
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=49.10 E-value=19 Score=24.21 Aligned_cols=27 Identities=4% Similarity=0.000 Sum_probs=19.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019459 88 KLKIFIDDNAKLAKERDSLAMTARNLS 114 (340)
Q Consensus 88 rl~~a~de~~kL~~E~~sLa~TvKKL~ 114 (340)
|++|.+|.-+.|..+|..|.+.|-+|.
T Consensus 1 RMnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 1 RMKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 345666666778888888888777664
No 202
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=49.09 E-value=68 Score=25.49 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019459 66 RLICELEERLSHVQKVYQEADSKLKIFI 93 (340)
Q Consensus 66 ~~i~~Lq~r~~~le~~L~e~~~rl~~a~ 93 (340)
....+|++-+..|+..|.|...-+..++
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i~e 63 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIVMK 63 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666665543
No 203
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=48.96 E-value=33 Score=24.93 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 63 EKDRLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 63 EKd~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
-|...+.+|+.+|..|+.+-.+....+..
T Consensus 19 rKk~~~~~Le~~v~~L~~~n~~L~~~v~~ 47 (62)
T 1jnm_A 19 RKLERIARLEEKVKTLKAQNSELASTANM 47 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888888888887766666666655
No 204
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=48.61 E-value=48 Score=33.02 Aligned_cols=75 Identities=13% Similarity=0.070 Sum_probs=33.4
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQ----EADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLA 118 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~----e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDva 118 (340)
...|..||..+..|-+.-.+-.+.|..|+.-+..-+.... .++++-+..+||+.+|..-......++..|..-+.
T Consensus 37 ~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~ 115 (411)
T 3ghg_C 37 DKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYN 115 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3445555555555554444444455544444333322211 13333334555665554444333444444444433
No 205
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=48.18 E-value=1.5e+02 Score=27.46 Aligned_cols=76 Identities=12% Similarity=0.193 Sum_probs=37.4
Q ss_pred HhcCCCCchhhhHHHHHHH------HHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 019459 21 LAVIPTDPYDQLDLARKIT------SMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFID 94 (340)
Q Consensus 21 lsvLP~DPyEQLdlArkIt------s~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~d 94 (340)
-++||..-|-|==+-.-|. .+|-+.--..-++=-+.+|. .|-|-.+++-+.|+.+++..|.+-..|+..++.
T Consensus 28 ~sILPrNiFS~sYllyVi~qgtDvG~VA~KANeAGqgAYdAQVrN--DEQDViL~dHe~rI~a~~a~l~dHE~RIt~~~~ 105 (242)
T 3c9i_A 28 ASILPRNVFSKSYLLYVIAQGTDVGAIAGKANEAGQGAYDAQVKN--DEQDVELADHEARIKQLRIDVDDHESRITANTK 105 (242)
T ss_dssp SSSSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhHHHHHHhcccchHHHHhhhhhhhhhhhhHHHhcC--cccceeeecchhhhhhhhcccccHHHHhhhhhh
Confidence 4688988777744333222 23322222233333333333 344555555556666666666655555555444
Q ss_pred HHHH
Q 019459 95 DNAK 98 (340)
Q Consensus 95 e~~k 98 (340)
....
T Consensus 106 ~ia~ 109 (242)
T 3c9i_A 106 AITA 109 (242)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 4433
No 206
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=47.76 E-value=25 Score=30.02 Aligned_cols=33 Identities=15% Similarity=0.342 Sum_probs=23.0
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 47 VSKLETETGTMRQMLYEKDRLICELEERLSHVQ 79 (340)
Q Consensus 47 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le 79 (340)
+..|+..+..|.+.|+.++..|.+|++++..+|
T Consensus 5 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (192)
T 1ca9_A 5 IEALSSKVQQLERSIGLKDLAMADLEQKVLEME 37 (192)
T ss_dssp THHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345666666677777777777777777777554
No 207
>1pul_A Hypothetical protein C32E8.3 in chromosome I; alpha helical, northeast structural genomics consortium, PSI, protein structure initiative; NMR {Caenorhabditis elegans} SCOP: a.39.1.11
Probab=47.76 E-value=20 Score=30.30 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=27.7
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHHHHHhh--ccccHHHHHHHH
Q 019459 277 KEFFRQAR--SRLSYEQFSAFLASIKELNA--QKQTREETLRKA 316 (340)
Q Consensus 277 KEFFRQAR--sRLSYEQFsaFLANIKELNA--hkQTREETL~KA 316 (340)
=-|.|-++ .||.|+||-.||.-|-+-.. .+-+.||-|...
T Consensus 69 IiF~Kv~k~~r~I~f~qF~~aL~~lA~~k~~g~~~~~~e~l~~i 112 (125)
T 1pul_A 69 IAFSKVTGPKKKATFDETKKVLAFVAEDRARQSKKPIQDELDAI 112 (125)
T ss_dssp HHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred eeehcccCCcceecHHHHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 34555544 57999999999988776653 337887766543
No 208
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=47.72 E-value=67 Score=23.59 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=21.3
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEERLSHV 78 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~l 78 (340)
.-|.-|-.|-..||+.|.+-..++..|+...+.+
T Consensus 10 ~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~m 43 (54)
T 1deb_A 10 KQVEALKMENSNLRQELEDNSNHLTKLETEASNM 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhH
Confidence 3456666777777777777666665555544433
No 209
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=47.65 E-value=68 Score=25.47 Aligned_cols=55 Identities=20% Similarity=0.410 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 62 YEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 62 aEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
.+|...|.+.+..+.+++.-|.+.+--++.+ =...|..+.+.|+.-.+||++|..
T Consensus 34 eerk~~i~~ie~~l~EA~ell~qMelE~r~~------p~~~R~~~~~klr~Yk~dL~~lk~ 88 (102)
T 1vcs_A 34 DEKKQMVANVEKQLEEARELLEQMDLEVREI------PPQSRGMYSNRMRSYKQEMGKLET 88 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTS------CTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666555555554444433332 135688899999999999988754
No 210
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=47.62 E-value=1.3e+02 Score=26.64 Aligned_cols=85 Identities=15% Similarity=0.250 Sum_probs=54.7
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHhhhHHHH
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAK----LAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~k----L~~E~~sLa~TvKKL~RDvaKL 120 (340)
..|..+|.++..|+..|..=-... +++...-.++..+...+..++.+-.. +...-..+...+++...-+..+
T Consensus 21 ~~l~~~E~~~~~l~~~l~kl~k~~----~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~~~~~L~~f~~~l~ei 96 (265)
T 2q12_A 21 SLLGVFEEDATAISNYMNQLYQAM----HRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDEL 96 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHGGGGSCCC-----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 567788888888888775543333 23333444556666677776666432 1222334567889999999999
Q ss_pred HHHHHHHHhhccc
Q 019459 121 ETFKRQLMQSLND 133 (340)
Q Consensus 121 E~FKk~LmqSLqe 133 (340)
+.++..|++.++.
T Consensus 97 ~~~~~~l~~~~~~ 109 (265)
T 2q12_A 97 SSCHAVLSTQLAD 109 (265)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987753
No 211
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=47.30 E-value=1.3e+02 Score=29.91 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=10.0
Q ss_pred HHHHHHhhhhHhHHHHH
Q 019459 41 MAIASRVSKLETETGTM 57 (340)
Q Consensus 41 ~A~atRVs~LE~E~~~L 57 (340)
.=|..||..|-.++..|
T Consensus 63 r~~~~rIe~L~~~L~~~ 79 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNY 79 (390)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 44566666666665555
No 212
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=47.08 E-value=63 Score=29.51 Aligned_cols=40 Identities=30% Similarity=0.344 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHhhccccCC
Q 019459 97 AKLAKERDSLAMTARNLSRDLA---KLETFKRQLMQSLNDDNS 136 (340)
Q Consensus 97 ~kL~~E~~sLa~TvKKL~RDva---KLE~FKk~LmqSLqeD~~ 136 (340)
+..++||+.+.+.+..|...|- -|+.|-+.|...|+++-.
T Consensus 92 i~~A~~Ne~l~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~F~ 134 (252)
T 3e98_A 92 MDVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLRHEFQ 134 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCC
Confidence 3477899999999999999888 588899999999988875
No 213
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=47.06 E-value=99 Score=25.36 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=15.8
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKD 65 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd 65 (340)
|+.-|..+.|.|+..||.+++|..
T Consensus 8 ~~~~~~~~~e~e~~~l~~~~~el~ 31 (125)
T 1joc_A 8 ALLERCLKGEGEIEKLQTKVLELQ 31 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 556666777777777776665543
No 214
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=46.39 E-value=63 Score=25.55 Aligned_cols=32 Identities=16% Similarity=0.392 Sum_probs=17.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019459 89 LKIFIDDNAKLAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 89 l~~a~de~~kL~~E~~sLa~TvKKL~RDvaKL 120 (340)
+.........+..||..|...+..|..|+..|
T Consensus 58 i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~ 89 (93)
T 3s4r_A 58 MRELRRQVDQLTNDKARVEVERDNLAEDIMRL 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444456666666666666666655443
No 215
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=46.16 E-value=1.1e+02 Score=29.91 Aligned_cols=71 Identities=21% Similarity=0.238 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019459 63 EKDRLICELEERLSHVQKVYQEADSKLKI-FIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSLND 133 (340)
Q Consensus 63 EKd~~i~~Lq~r~~~le~~L~e~~~rl~~-a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 133 (340)
+-|+.-.+++.++..|...-......+.+ .-++...|..|-..|...+|.|...+..+|.=-..+|.+|-+
T Consensus 32 ~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN 103 (421)
T 1ses_A 32 ALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPL 103 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33334444444444444444444333332 224455677777777777777777777777766777777743
No 216
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=46.05 E-value=22 Score=24.07 Aligned_cols=27 Identities=7% Similarity=0.163 Sum_probs=20.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019459 88 KLKIFIDDNAKLAKERDSLAMTARNLS 114 (340)
Q Consensus 88 rl~~a~de~~kL~~E~~sLa~TvKKL~ 114 (340)
|++|.+|--+.|..+|..|.+.|-+|.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 566777777888889988888877664
No 217
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=45.90 E-value=15 Score=23.47 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=14.4
Q ss_pred HHHHHHHHHhhhHHHHHH
Q 019459 105 SLAMTARNLSRDLAKLET 122 (340)
Q Consensus 105 sLa~TvKKL~RDvaKLE~ 122 (340)
.|-+.||+|.++|-|||.
T Consensus 5 kldanvkrlekevgkleg 22 (28)
T 4dac_A 5 KLDANVKRLEKEVGKLEG 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eccccHHHHHHHHhhhhh
Confidence 466788899999988884
No 218
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=45.90 E-value=17 Score=34.99 Aligned_cols=37 Identities=8% Similarity=0.311 Sum_probs=21.9
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQK 80 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~ 80 (340)
-.+|..+|+++..|+..|.+.+..|.+|+.+|..|+.
T Consensus 10 E~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~ 46 (319)
T 1fzc_C 10 EASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 46 (319)
T ss_dssp CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666555555544
No 219
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=45.84 E-value=24 Score=23.92 Aligned_cols=27 Identities=7% Similarity=0.144 Sum_probs=20.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019459 88 KLKIFIDDNAKLAKERDSLAMTARNLS 114 (340)
Q Consensus 88 rl~~a~de~~kL~~E~~sLa~TvKKL~ 114 (340)
|++|.+|.-+.|..+|..|.+-|.+|.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 566777777788888888888877764
No 220
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=45.14 E-value=35 Score=26.11 Aligned_cols=35 Identities=37% Similarity=0.433 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 55 GTMRQMLYEKDRLICELEERLSHVQKVYQEADSKL 89 (340)
Q Consensus 55 ~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl 89 (340)
..|...+..||..|.+|+..+..-|..+++....|
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~L 48 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKL 48 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888887776666555555443
No 221
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=44.94 E-value=91 Score=22.99 Aligned_cols=17 Identities=35% Similarity=0.655 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019459 64 KDRLICELEERLSHVQK 80 (340)
Q Consensus 64 Kd~~i~~Lq~r~~~le~ 80 (340)
|+.++++|+.++..+|.
T Consensus 4 ~~~~~~~le~kl~~lEn 20 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFEN 20 (65)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555444
No 222
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=44.81 E-value=1.2e+02 Score=25.12 Aligned_cols=13 Identities=15% Similarity=0.049 Sum_probs=7.5
Q ss_pred hhhhHHHHHHHHH
Q 019459 29 YDQLDLARKITSM 41 (340)
Q Consensus 29 yEQLdlArkIts~ 41 (340)
.++++..+.|...
T Consensus 43 ~~dl~~l~~I~~l 55 (142)
T 3gp4_A 43 AEDLRWILFTRQM 55 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4566666666543
No 223
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=44.67 E-value=32 Score=28.02 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=13.4
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHHHHH
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRLICELE 72 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~i~~Lq 72 (340)
..|+..|..|+..|.++=.+=|++|..++
T Consensus 5 ~~~~~~Lk~El~~L~~~E~~LD~~i~~~~ 33 (106)
T 2aze_B 5 GGRLEGLTQDLRQLQESEQQLDHLMNICT 33 (106)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555444443344433333
No 224
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=44.64 E-value=2.4e+02 Score=27.84 Aligned_cols=31 Identities=10% Similarity=0.035 Sum_probs=15.1
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEE 73 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~ 73 (340)
|.+.|..||.-+..|-..-.+-..++..++.
T Consensus 36 V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~ 66 (409)
T 1m1j_C 36 TDGELLEIEGLLQQATNSTGSIEYLIQHIKT 66 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666655555444444444444444433
No 225
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=44.54 E-value=29 Score=25.11 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=24.3
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEAD 86 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~ 86 (340)
=+..||.+-..||.+|. ++|+++++.+|++..
T Consensus 14 ~l~~LEkqF~~LkEqlY---------~ERl~ql~~~Leel~ 45 (49)
T 2xus_A 14 EMLDLEKQFSELKEKLF---------RERLSQLRLRLEEVG 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Confidence 46778888888888875 577788887777654
No 226
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=44.15 E-value=1.2e+02 Score=24.07 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019459 67 LICELEERLSHVQKVYQEADSKLKIFIDDNAKLAK 101 (340)
Q Consensus 67 ~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~ 101 (340)
.|.+|+-||+.+|.+-.+..-+|+..-+|.+-|++
T Consensus 27 Ei~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~ 61 (81)
T 3qh9_A 27 ELRHLKIKVEELENERNQYEWKLKATKAEVAQLQE 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45566666666666666666666665555544443
No 227
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=44.05 E-value=37 Score=25.72 Aligned_cols=10 Identities=10% Similarity=0.219 Sum_probs=5.7
Q ss_pred hHHhcCCCCc
Q 019459 19 EVLAVIPTDP 28 (340)
Q Consensus 19 eilsvLP~DP 28 (340)
++-.+||.-|
T Consensus 23 ~Lr~lvP~~~ 32 (83)
T 1nkp_B 23 SLRDSVPSLQ 32 (83)
T ss_dssp HHHTTSGGGT
T ss_pred HHHHHCCCCC
Confidence 4556666544
No 228
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=43.87 E-value=36 Score=31.08 Aligned_cols=18 Identities=28% Similarity=0.209 Sum_probs=6.9
Q ss_pred HhhhHHHHHHHHHHHHhh
Q 019459 113 LSRDLAKLETFKRQLMQS 130 (340)
Q Consensus 113 L~RDvaKLE~FKk~LmqS 130 (340)
|.+-.++|+..++.|||+
T Consensus 194 ~~~~~~~~~~~~~~l~q~ 211 (412)
T 3okg_A 194 VRRLRAEAQKDTELLMQT 211 (412)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333334444443
No 229
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=43.38 E-value=2.2e+02 Score=28.89 Aligned_cols=89 Identities=17% Similarity=0.167 Sum_probs=63.4
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHH---------HHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEAD---SKLKIFIDDNAKLAKE---------RDSLAMTA 110 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~---~rl~~a~de~~kL~~E---------~~sLa~Tv 110 (340)
|..-|..||..+..|-+.-.+-.+.|..|+.-+...+....+.+ .+-+..+||+.+..+| -+.|.+.+
T Consensus 93 V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~~~~~~~i~~l~~~~ 172 (461)
T 3ghg_B 93 IRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVNSNIPTNLRVLRSIL 172 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHTHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHH
Confidence 56677788888888888888888888888888887777666542 2333456666555553 24677788
Q ss_pred HHHhhhHHHHHHHHHHHHhhc
Q 019459 111 RNLSRDLAKLETFKRQLMQSL 131 (340)
Q Consensus 111 KKL~RDvaKLE~FKk~LmqSL 131 (340)
.++++.|.+||.--.+++.--
T Consensus 173 ~~~~~~i~~l~~~~~~~~~~c 193 (461)
T 3ghg_B 173 ENLRSKIQKLESDVSAQMEYC 193 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhhhc
Confidence 888888888888777776654
No 230
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=43.26 E-value=40 Score=26.35 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=13.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 50 LETETGTMRQMLYEKDRLICELEERLSHVQK 80 (340)
Q Consensus 50 LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~ 80 (340)
+|+|+..||..+.+-.-.-.+|+.+|.+|..
T Consensus 47 ~E~d~~~LrkdvD~a~l~r~dLE~kvesL~e 77 (86)
T 3swk_A 47 AENTLQSFRQDVDNASLARLDLERKVESLQE 77 (86)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333
No 231
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=43.09 E-value=2.3e+02 Score=27.02 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019459 70 ELEERLSHVQKVYQEADSKLK 90 (340)
Q Consensus 70 ~Lq~r~~~le~~L~e~~~rl~ 90 (340)
+.+.....|++.|.++...+.
T Consensus 394 e~~~~~~~~~~~~~~~~~~~~ 414 (471)
T 3mq9_A 394 EARNVTHLLQQELTEAQKGFQ 414 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhhhHH
Confidence 333334444444444444443
No 232
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=43.03 E-value=46 Score=22.77 Aligned_cols=12 Identities=33% Similarity=0.523 Sum_probs=6.9
Q ss_pred HhhhhHhHHHHH
Q 019459 46 RVSKLETETGTM 57 (340)
Q Consensus 46 RVs~LE~E~~~L 57 (340)
||++||..+..|
T Consensus 2 RMnQLE~kVEeL 13 (36)
T 1kd8_A 2 EVKQLEAEVEEI 13 (36)
T ss_dssp CCHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 556666655544
No 233
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=42.85 E-value=2.3e+02 Score=27.28 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHH
Q 019459 97 AKLAKERDSLAMTARNLSRDLAK 119 (340)
Q Consensus 97 ~kL~~E~~sLa~TvKKL~RDvaK 119 (340)
-++..+|+.++..-+.|.+++.+
T Consensus 79 re~~~~Rd~~a~~k~~Le~~ier 101 (302)
T 3ibp_A 79 REAIVERDEVGARKNAVDEEIER 101 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777776666666655
No 234
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=42.42 E-value=39 Score=30.83 Aligned_cols=39 Identities=13% Similarity=0.333 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHhhc
Q 019459 93 IDDNAKLAKERDSLAMTARNLSR----DLAKLETFKRQLMQSL 131 (340)
Q Consensus 93 ~de~~kL~~E~~sLa~TvKKL~R----DvaKLE~FKk~LmqSL 131 (340)
++||.+.++--+.+-..+..|.+ -+++|+.+|+.||+.+
T Consensus 365 l~eQ~~I~~~l~~~d~~i~~l~~~~~~~~~~L~~lk~~LL~k~ 407 (412)
T 3okg_A 365 LEEQRRIVAYLDQIQQQVAALKRAQAETEAELKRLEQAILDKA 407 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555544444444333333332 5778888888888754
No 235
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=42.41 E-value=68 Score=25.97 Aligned_cols=43 Identities=14% Similarity=0.410 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019459 65 DRLICELEERLSHV------QKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLS 114 (340)
Q Consensus 65 d~~i~~Lq~r~~~l------e~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~ 114 (340)
..++.|+-++|+.+ |.++.|.|+.++ ||.+|+..--..++.|.
T Consensus 31 ~qvikEIs~Kv~~Iqn~~L~E~~IRdLNDEIN-------kL~rEK~~WE~rI~eLG 79 (92)
T 1x4t_A 31 RQIIGEISKKVAQIQNAGLGEFRIRDLNDEIN-------KLLREKGHWEVRIKELG 79 (92)
T ss_dssp HHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhC
Confidence 44577777888776 345666666554 49999988888887764
No 236
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=42.22 E-value=19 Score=26.06 Aligned_cols=32 Identities=16% Similarity=0.144 Sum_probs=23.7
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEERLS 76 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~ 76 (340)
.=|..|-.|...||+++.+=...+.+|+.|+.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667778888888888777777777777765
No 237
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=42.17 E-value=1.3e+02 Score=23.87 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 59 QMLYEKDRLICELEERLSHVQKVYQEA 85 (340)
Q Consensus 59 ~~laEKd~~i~~Lq~r~~~le~~L~e~ 85 (340)
+.+.+=++.+.+.++=|.++|-+++..
T Consensus 38 ~~i~~ie~~l~EA~ell~qMelE~r~~ 64 (102)
T 1vcs_A 38 QMVANVEKQLEEARELLEQMDLEVREI 64 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444555555555555555554443
No 238
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=41.55 E-value=3.2e+02 Score=28.27 Aligned_cols=46 Identities=11% Similarity=0.184 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 019459 54 TGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKL 99 (340)
Q Consensus 54 ~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL 99 (340)
+..-|.+++.-...|..+|..++.+-.+.+.+.+.|.+++.|++++
T Consensus 358 lddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~ 403 (602)
T 1cii_A 358 LLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENI 403 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677776677777777777777777777777777777777666
No 239
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=41.48 E-value=70 Score=32.87 Aligned_cols=29 Identities=17% Similarity=0.047 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 60 MLYEKDRLICELEERLSHVQKVYQEADSK 88 (340)
Q Consensus 60 ~laEKd~~i~~Lq~r~~~le~~L~e~~~r 88 (340)
.|.+|+..|++=+.|-+.+|.+.....++
T Consensus 481 ~l~~~~k~~~~~~~~~e~~~~~~~~l~~~ 509 (592)
T 1f5n_A 481 TLTEKEKEIEVERVKAESAQASAKMLHEM 509 (592)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666555544444433
No 240
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=41.44 E-value=74 Score=28.77 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHhh
Q 019459 56 TMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE---TFKRQLMQS 130 (340)
Q Consensus 56 ~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE---~FKk~LmqS 130 (340)
.+.++|...|.+|..|+.....|-.+|. ...+|...|.++-++|-+.++.+.-.++|-+ -++.-|+.-
T Consensus 10 ~~q~ql~~ad~LV~~L~~En~~L~~ql~-------~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~ 80 (190)
T 4emc_A 10 SVKQQIDSADLLVANLVNENFVLSEKLD-------TKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEY 80 (190)
T ss_dssp ----------CHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHH
Confidence 3456677777788888877776655555 4445555588888888888877666665532 244444443
No 241
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=41.33 E-value=30 Score=23.28 Aligned_cols=27 Identities=7% Similarity=-0.048 Sum_probs=19.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019459 88 KLKIFIDDNAKLAKERDSLAMTARNLS 114 (340)
Q Consensus 88 rl~~a~de~~kL~~E~~sLa~TvKKL~ 114 (340)
|++|.+|.-+.|..+|.-|.+.|.+|.
T Consensus 1 RMnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 1 RMKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345656666778888888888777664
No 242
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=41.15 E-value=92 Score=22.58 Aligned_cols=27 Identities=7% Similarity=0.116 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 019459 69 CELEERLSHVQKVYQEADSKLKIFIDD 95 (340)
Q Consensus 69 ~~Lq~r~~~le~~L~e~~~rl~~a~de 95 (340)
.+++.++..||.+|+++.+.+.+-+.|
T Consensus 3 ~~~q~~i~~le~el~~~r~e~~~q~~e 29 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYHLENEVARLKKL 29 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666777666666666553333
No 243
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=41.02 E-value=1e+02 Score=27.27 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=22.1
Q ss_pred CccchHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 019459 272 PRIDGKEFFRQARSRLSYEQFSAFLASIKELNAQ 305 (340)
Q Consensus 272 ~rvDGKEFFRQARsRLSYEQFsaFLANIKELNAh 305 (340)
.+||=-.|.|++|. |+=|||-. -|-|++.+++
T Consensus 141 g~I~ld~ylK~vR~-LaReQF~~-ral~~Ki~~~ 172 (174)
T 2p22_A 141 GTIPLDTFVKQGRE-LARQQFLV-RWHIQRITSP 172 (174)
T ss_dssp TSSCHHHHHHHHHH-HHHHHHHH-HHHHHHHHSS
T ss_pred CCCCHHHHHHHHHH-HHHHHHHH-HHHHHHHHhh
Confidence 56788889999885 78888854 3445555443
No 244
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=40.66 E-value=1.5e+02 Score=24.11 Aligned_cols=14 Identities=36% Similarity=0.435 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 019459 63 EKDRLICELEERLS 76 (340)
Q Consensus 63 EKd~~i~~Lq~r~~ 76 (340)
|..+.+.+|+.++.
T Consensus 26 e~e~~k~eL~~~~~ 39 (107)
T 2no2_A 26 DLEREKKELEDSLE 39 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 245
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=40.47 E-value=3.1e+02 Score=28.03 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=7.7
Q ss_pred HHHHHHHHhhcccc
Q 019459 121 ETFKRQLMQSLNDD 134 (340)
Q Consensus 121 E~FKk~LmqSLqeD 134 (340)
|..-|+|-|=.--|
T Consensus 180 e~~QKqLeQv~a~d 193 (491)
T 1m1j_A 180 DNIQKHLTQASSID 193 (491)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhccc
Confidence 45666666654433
No 246
>1wlo_A SUFE protein; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; NMR {Thermus thermophilus}
Probab=40.33 E-value=20 Score=30.27 Aligned_cols=46 Identities=24% Similarity=0.287 Sum_probs=38.6
Q ss_pred CCCCchhHHhcCCCCchhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHH
Q 019459 13 DFHLPDEVLAVIPTDPYDQLDLARKITSMAIASRVSKLETETGTMRQMLYE 63 (340)
Q Consensus 13 ~f~Lp~eilsvLP~DPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laE 63 (340)
+-.=|+||+++=| |=|++|.|..-++ .+|.+.|.+=+.++|....+
T Consensus 87 ~G~tp~eIl~~d~-~~~~~lGL~~~LS----psR~nGl~am~~~ik~~a~~ 132 (136)
T 1wlo_A 87 EGESPEAVLEVPP-GFYRGYGLEEFFT----PLRLRGLEAALLRLQAQVRK 132 (136)
T ss_dssp TTCCTTTTTSSCT-TTTTTTTSHHHHT----HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHhCCH-HHHHHcCchhhcC----chHHHHHHHHHHHHHHHHHH
Confidence 4556899999988 7899999998777 68999999999888877654
No 247
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=40.23 E-value=46 Score=22.82 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 53 ETGTMRQMLYEKDRLICELEERLSHV 78 (340)
Q Consensus 53 E~~~LR~~laEKd~~i~~Lq~r~~~l 78 (340)
|-.+|-..+.+||..|+.|+++-.+|
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44567777788888888777765543
No 248
>1wlm_A Protein CGI-38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.39.1.11
Probab=40.16 E-value=18 Score=31.35 Aligned_cols=36 Identities=17% Similarity=0.356 Sum_probs=27.2
Q ss_pred hcCCHHHHHHHHHHHHHHhhccccHHHHHHHHHHhh
Q 019459 285 SRLSYEQFSAFLASIKELNAQKQTREETLRKAEEIF 320 (340)
Q Consensus 285 sRLSYEQFsaFLANIKELNAhkQTREETL~KA~eIF 320 (340)
.||.||||-.+|+.|=+-.....+.||.|.....|-
T Consensus 75 rkI~f~qF~~aL~~lA~kr~kg~~~~e~~~~i~kl~ 110 (151)
T 1wlm_A 75 RVINYEEFKKALEELATKRFKGKSKEEAFDAICQLI 110 (151)
T ss_dssp SEEEHHHHHHHHHHTHHHHSSSCCHHHHHHHHHHHH
T ss_pred ceecHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 369999999999988776666799999886433343
No 249
>2jrf_A Tubulin polymerization-promoting protein family member 3; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=39.39 E-value=25 Score=31.47 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=27.1
Q ss_pred hcCCHHHHHHHHHHHHHHhhccccHHHHHHHHHHh
Q 019459 285 SRLSYEQFSAFLASIKELNAQKQTREETLRKAEEI 319 (340)
Q Consensus 285 sRLSYEQFsaFLANIKELNAhkQTREETL~KA~eI 319 (340)
.||.||||-.+|+.|=+-....-+.||.|.....|
T Consensus 68 rkI~feqF~~aL~~lA~kk~~g~s~eE~~~~i~kL 102 (184)
T 2jrf_A 68 RVINYEEFKKALEELATKRFKGKSKEEAFDAICQL 102 (184)
T ss_dssp SEEEHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHT
T ss_pred eeecHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 57999999999988877776668999887743333
No 250
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=39.35 E-value=86 Score=29.98 Aligned_cols=52 Identities=21% Similarity=0.228 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019459 66 RLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLA 118 (340)
Q Consensus 66 ~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDva 118 (340)
..+..|++++..|+..+.++..+|.. ..+..|..+..+.|.+++..+.+.+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~~~~~~~~~~~~~~~~~~ 298 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKDIEK-RPENKKAHNKRDNLQQQLDANEQKIE 298 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-CcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666655555555521 11123333444444444444444333
No 251
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=39.28 E-value=82 Score=22.84 Aligned_cols=39 Identities=10% Similarity=0.141 Sum_probs=24.9
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKV 81 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~ 81 (340)
+-..++.||+++..+|+.++.--+...+|-.=-..||.+
T Consensus 5 ~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~E 43 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIE 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 345677888888888888776655555555444444443
No 252
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=39.21 E-value=1.9e+02 Score=29.15 Aligned_cols=89 Identities=15% Similarity=0.165 Sum_probs=46.4
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH-hHHHHHHH----HHH-HH
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQK-------------VYQEADSKLKI-FIDDNAKL----AKE-RD 104 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~-------------~L~e~~~rl~~-a~de~~kL----~~E-~~ 104 (340)
.-+|-.|..+-+.+..++.+-.+....+.+++..+-. .+.+. ..+.. +-++...| .+| -.
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~ 114 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEA-YENGTLKGEQVEQLCVLQLKQLSK 114 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccc-ccccccchhhHHHhhHHHHHHHHH
Confidence 4455556666666666665555555555555543322 00000 00000 11333445 556 77
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019459 105 SLAMTARNLSRDLAKLETFKRQLMQSLND 133 (340)
Q Consensus 105 sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 133 (340)
.|...+|.|...+..+|.=-..++.+|-+
T Consensus 115 ~l~~~i~~le~~~~~~~~~~~~~l~~iPN 143 (484)
T 3lss_A 115 DLSDQVAGLAKEAQQLEEERDKLMLNVGN 143 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88888888888888888777778887743
No 253
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=39.04 E-value=39 Score=22.74 Aligned_cols=13 Identities=23% Similarity=0.463 Sum_probs=5.5
Q ss_pred HhhhhHhHHHHHH
Q 019459 46 RVSKLETETGTMR 58 (340)
Q Consensus 46 RVs~LE~E~~~LR 58 (340)
||++||..+..|.
T Consensus 1 RM~QLE~kVEeLl 13 (33)
T 3m48_A 1 RMAQLEAKVEELL 13 (33)
T ss_dssp --CHHHHHHHHHH
T ss_pred CccHHHHHHHHHH
Confidence 4455555554443
No 254
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=39.03 E-value=1.5e+02 Score=28.92 Aligned_cols=69 Identities=9% Similarity=0.111 Sum_probs=31.7
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHH
Q 019459 41 MAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFI-----DDNAKLAKERDSLAMTARN 112 (340)
Q Consensus 41 ~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~-----de~~kL~~E~~sLa~TvKK 112 (340)
.+++.++..+-..+..+|..+. ..|..-=++|+.|=.++.+.+.++..+. ..-..|..+||.|...+-+
T Consensus 74 ~~La~~~n~~~~~L~~~~~~~n---~~i~~~V~~iN~l~~qIa~LN~qI~~~~~~~~g~~~ndLlDqRD~ll~eLS~ 147 (463)
T 2d4y_A 74 EGLVNQFKTTDQYLRDQDKQVN---IAIGSSVAQINNYAKQIANLNDQISRMTGVGAGASPNDLLDQRDQLVSELNK 147 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHhHHHHHHHHHHHHh
Confidence 4455555555555555554443 2344444444444444555555544331 1222355555555544333
No 255
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=39.00 E-value=39 Score=24.50 Aligned_cols=26 Identities=35% Similarity=0.558 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 97 AKLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 97 ~kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
+.|.++|.+|..-+-.|.+|++.||.
T Consensus 27 arlendnanlekdianlekdianler 52 (56)
T 3he4_A 27 ARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777764
No 256
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=38.90 E-value=1.4e+02 Score=23.56 Aligned_cols=55 Identities=20% Similarity=0.176 Sum_probs=0.0
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019459 48 SKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSL 106 (340)
Q Consensus 48 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sL 106 (340)
+.||+||.. ++-+.|+= ...+.-.-.++..|+|+..|..-.+.|..+|.++-..|
T Consensus 17 SALeaEIqA-KQ~i~EEL---s~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 17 EALEEEVLT-RQSLSREM---EAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 257
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=38.33 E-value=61 Score=24.92 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=15.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 019459 84 EADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLA 118 (340)
Q Consensus 84 e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDva 118 (340)
.|.+=+....+++.+|..|++.|...+.-|.+.|+
T Consensus 44 kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 44 KAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444555555544444444443
No 258
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=37.33 E-value=36 Score=24.15 Aligned_cols=21 Identities=10% Similarity=0.154 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019459 68 ICELEERLSHVQKVYQEADSK 88 (340)
Q Consensus 68 i~~Lq~r~~~le~~L~e~~~r 88 (340)
|.+|++|+..||..|....+.
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455556666555555554443
No 259
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=37.33 E-value=47 Score=22.71 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=20.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 019459 88 KLKIFIDDNAKLAKERDSLAMTARNLSR 115 (340)
Q Consensus 88 rl~~a~de~~kL~~E~~sLa~TvKKL~R 115 (340)
|++|.++--+.|..+|.-|.+.|.+|..
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4556666667788888888888777654
No 260
>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1
Probab=37.21 E-value=5.6 Score=34.58 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=41.8
Q ss_pred CCCCchhHHhcCCCCchhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHH
Q 019459 13 DFHLPDEVLAVIPTDPYDQLDLARKITSMAIASRVSKLETETGTMRQMLYEKDRLI 68 (340)
Q Consensus 13 ~f~Lp~eilsvLP~DPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i 68 (340)
+-.=|+||+++=|.|=|++|.|..-++. +|.+.|.+=+.++|....+.-++.
T Consensus 100 ~G~tp~eIl~~d~~~f~~~lGL~~~LSp----sR~NGl~am~~~ik~~a~~~~~~~ 151 (155)
T 1ni7_A 100 EGKTAAELQAQSPLALFDELGLRAQLSA----SRSQGLNALSEAIIAATKQVLEHH 151 (155)
T ss_dssp TTCCHHHHHHSCTHHHHHHHTSSSSSCH----HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cCCCHHHHHhCCHHHHHHHcCchhhcCc----hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456999999988788899999987764 899999999999998887765443
No 261
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=37.20 E-value=41 Score=34.04 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=23.0
Q ss_pred HHHH----HHH-HHHHhhhHHHHHHHHHHHHhhccccCC
Q 019459 103 RDSL----AMT-ARNLSRDLAKLETFKRQLMQSLNDDNS 136 (340)
Q Consensus 103 ~~sL----a~T-vKKL~RDvaKLE~FKk~LmqSLqeD~~ 136 (340)
...| ... ++.|..++..||.--+.|-..|++--.
T Consensus 101 ~~~l~~~~~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 139 (484)
T 3lss_A 101 VEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLML 139 (484)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456 666 888888888888888888777765544
No 262
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=37.06 E-value=54 Score=22.49 Aligned_cols=12 Identities=42% Similarity=0.501 Sum_probs=6.6
Q ss_pred HhHHHHHHHHHH
Q 019459 91 IFIDDNAKLAKE 102 (340)
Q Consensus 91 ~a~de~~kL~~E 102 (340)
-|+.||+||-+|
T Consensus 4 ~~L~ENekLhk~ 15 (37)
T 1t6f_A 4 EALKENEKLHKE 15 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 355566666554
No 263
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=36.78 E-value=2.1e+02 Score=24.86 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=8.6
Q ss_pred hhhhHhHHHHHHHHHHH
Q 019459 47 VSKLETETGTMRQMLYE 63 (340)
Q Consensus 47 Vs~LE~E~~~LR~~laE 63 (340)
|+.||.++..|-..|.|
T Consensus 13 ia~L~~D~~s~~~eleE 29 (167)
T 4gkw_A 13 VADLKQDTESLQKQLEE 29 (167)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555544443
No 264
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=36.76 E-value=2.1e+02 Score=24.88 Aligned_cols=35 Identities=17% Similarity=0.162 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019459 100 AKERDSLAMTARNLSRDLAKLETFKRQLMQSLNDD 134 (340)
Q Consensus 100 ~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD 134 (340)
.+=++.....|.++|+--.+++.-...++..||+=
T Consensus 173 ~ka~~~Y~~~v~~~n~~~~~~~~~~~~~~~~lQ~l 207 (276)
T 2v0o_A 173 KKATDTYKLYVEKYALAKADFEQKMTETAQKFQDI 207 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555566666665555555455555555443
No 265
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=36.75 E-value=1.4e+02 Score=22.95 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019459 71 LEERLSHVQKVYQEADSKLKIFIDDNAKLAKE 102 (340)
Q Consensus 71 Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E 102 (340)
|...|..|..++.|.+.+|..+.+|..++..|
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~ee 33 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDE 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555554433
No 266
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=36.72 E-value=35 Score=33.48 Aligned_cols=74 Identities=15% Similarity=0.195 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 019459 60 MLYEKDRLICELEERLSHVQKVYQEADSKLKIF---IDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSLND 133 (340)
Q Consensus 60 ~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a---~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqe 133 (340)
++.+-|+.-.+++.++..|...-......+.++ -++...|..|-..|...+|.|...+..+|.=-..+|.+|-+
T Consensus 31 ~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN 107 (425)
T 2dq3_A 31 KVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPN 107 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 333444444444444444444444444443321 23445667777788888888888888888777778887744
No 267
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=36.71 E-value=1.2e+02 Score=31.60 Aligned_cols=44 Identities=11% Similarity=0.181 Sum_probs=31.8
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEAD 86 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~ 86 (340)
+..+-..+|..+..||..+.+.++.|..|+..-+.++-.+++..
T Consensus 11 ~~~k~~ei~~~v~~lr~~~q~~e~~ik~Le~~Qe~f~~~yk~~q 54 (596)
T 1bg1_A 11 VTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLK 54 (596)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44566677777788888888888877777777777776666555
No 268
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=36.60 E-value=2.3e+02 Score=25.77 Aligned_cols=76 Identities=13% Similarity=0.060 Sum_probs=43.3
Q ss_pred hHhHHHHHHHHHH-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHH------HHHHHHHHHHhhhHHHH
Q 019459 50 LETETGTMRQMLY-EKDRLICELEERLSHV--QKVYQEADSKLKIFIDDNAKLAKER------DSLAMTARNLSRDLAKL 120 (340)
Q Consensus 50 LE~E~~~LR~~la-EKd~~i~~Lq~r~~~l--e~~L~e~~~rl~~a~de~~kL~~E~------~sLa~TvKKL~RDvaKL 120 (340)
|+.++.+....|- =|+.+|..|+++++.- +....+...-|..+-.||.+|+-|- -.++..||+----.-..
T Consensus 82 ~D~~~~~i~~~ln~~r~~~i~~lk~~Ie~~k~~q~~~~~~~~Lf~~~kEn~al~lEa~yre~~~~v~~EvK~rLDy~v~~ 161 (214)
T 2cly_A 82 ADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDYHISV 161 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555444443 3677888888888763 3344556666666677777776542 34445555544333445
Q ss_pred HHHHH
Q 019459 121 ETFKR 125 (340)
Q Consensus 121 E~FKk 125 (340)
|+..|
T Consensus 162 e~~~r 166 (214)
T 2cly_A 162 QNMMR 166 (214)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 269
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=36.59 E-value=2.2e+02 Score=28.15 Aligned_cols=75 Identities=15% Similarity=0.125 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHh
Q 019459 57 MRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRD-------LAKLETFKRQLMQ 129 (340)
Q Consensus 57 LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RD-------vaKLE~FKk~Lmq 129 (340)
|.....|=+.++.+|++.+...+.-.......|.+...+...|...-+.|..+.+++.+= -..|+.||-++..
T Consensus 240 v~~Da~EL~~V~~eL~~~~~~i~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~e~l~i~~~i~e~l~~fk~~~~~ 319 (413)
T 4hpq_C 240 VERDDKDLAAINSLLQDAAIDVASFVRKVNMLLDERDADKAKMQATLSKLLTELRKHEEYISVFEGISALIQKFKASCLE 319 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555666677777777777666666666665555544444444444444432211 1235667766655
Q ss_pred hc
Q 019459 130 SL 131 (340)
Q Consensus 130 SL 131 (340)
-+
T Consensus 320 ~~ 321 (413)
T 4hpq_C 320 DI 321 (413)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 270
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=36.50 E-value=1.7e+02 Score=23.77 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019459 68 ICELEERLSHVQKVYQEADSKL 89 (340)
Q Consensus 68 i~~Lq~r~~~le~~L~e~~~rl 89 (340)
.+.|+..-+.-+.-+.+..+|+
T Consensus 34 l~~l~~e~~~R~~~i~el~aki 55 (101)
T 1d7m_A 34 LASLESEGAEREKRLRELEAKL 55 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 271
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=36.21 E-value=1.4e+02 Score=26.64 Aligned_cols=24 Identities=8% Similarity=0.196 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 57 MRQMLYEKDRLICELEERLSHVQK 80 (340)
Q Consensus 57 LR~~laEKd~~i~~Lq~r~~~le~ 80 (340)
.|+-+....+.+..||+.+..||.
T Consensus 126 ireli~~AertV~kLqkeiD~LED 149 (175)
T 3mud_A 126 IRELICYCLDTTAKNEKSIDDLEE 149 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 272
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=35.60 E-value=33 Score=34.99 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=18.8
Q ss_pred HhcCCHHHHH----HHHHHHH-HH----hhccccHHHHHHHHHHhhC
Q 019459 284 RSRLSYEQFS----AFLASIK-EL----NAQKQTREETLRKAEEIFG 321 (340)
Q Consensus 284 RsRLSYEQFs----aFLANIK-EL----NAhkQTREETL~KA~eIFG 321 (340)
+.|+.|-.=+ .=|.+.| || +.-|||.=|-|..-.--=|
T Consensus 504 ~eR~~~~ekn~~lq~qL~~L~~el~~~r~~~k~t~~D~lh~en~~~G 550 (575)
T 2i1j_A 504 ADRRTLAERNERLHNQLKALKQDLARSCDETKETAMDKIHRENVRQG 550 (575)
T ss_dssp GGCCCHHHHCHHHHHHHHHHHHHHHTTBCGGGCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHhhhcC
Confidence 5788886422 1122221 22 3346676666655444445
No 273
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=35.49 E-value=62 Score=25.11 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 97 AKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 97 ~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
..|.+||..|-..|..|...|..|.
T Consensus 46 ~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 46 LELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888888888877764
No 274
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=35.29 E-value=1e+02 Score=26.98 Aligned_cols=54 Identities=15% Similarity=0.165 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhHHHHH-H----HHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHhhcc
Q 019459 79 QKVYQEADSKLKIFIDDNA-K----LAKERDSLAMTARNLSRDLA-KLETFKRQLMQSLN 132 (340)
Q Consensus 79 e~~L~e~~~rl~~a~de~~-k----L~~E~~sLa~TvKKL~RDva-KLE~FKk~LmqSLq 132 (340)
...+.+...+|.--.+|-. + +.+=|..|.--+..|...|. ++|.||.+|.--.+
T Consensus 105 ~kdlEelr~kL~P~~eEL~~~l~~~~Eelr~~L~Py~eelr~kl~~~~eeLr~~l~P~~e 164 (191)
T 1nfn_A 105 GADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQA 164 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4444455555554444331 1 22345556656666655544 68888888764443
No 275
>2lyc_A Spindle and kinetochore-associated protein 1 HOMO; SKA1, microtubule, SKA1-MTBD, protein binding; NMR {Caenorhabditis elegans}
Probab=34.92 E-value=11 Score=32.08 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=15.7
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 019459 282 QARSRLSYEQFSAFLASIK 300 (340)
Q Consensus 282 QARsRLSYEQFsaFLANIK 300 (340)
--|.||+|||-++|+..|-
T Consensus 21 YmrGRlTle~lN~~i~~in 39 (130)
T 2lyc_A 21 YQLGRLTLEMMNEIVSKMD 39 (130)
T ss_dssp HHHSSCCHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHH
Confidence 4689999999999986553
No 276
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=34.73 E-value=1.2e+02 Score=27.65 Aligned_cols=35 Identities=11% Similarity=0.224 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 57 MRQMLYEKDRLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 57 LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
|..+|.+....+.+|++++-.+.+.+.-..-|...
T Consensus 64 l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~r 98 (213)
T 4ani_A 64 AKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQ 98 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444433
No 277
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=34.44 E-value=89 Score=25.21 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=21.4
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHV 78 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~l 78 (340)
+..|+..|+..+..|...+.++...|..+++.+.++
T Consensus 93 l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 93 IKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666665555543
No 278
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=34.26 E-value=54 Score=23.61 Aligned_cols=28 Identities=14% Similarity=0.302 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q 019459 277 KEFFRQARSRLSYEQFSAFLASIKELNA 304 (340)
Q Consensus 277 KEFFRQARsRLSYEQFsaFLANIKELNA 304 (340)
++|.+|||.--=||.-...=.|++||..
T Consensus 14 ~~~I~qAk~~rRfdEV~~L~~NL~EL~~ 41 (48)
T 3v1a_A 14 HSFIHQAKAAGRMDEVRTLQENLHQLMH 41 (48)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999975
No 279
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=34.25 E-value=14 Score=26.43 Aligned_cols=22 Identities=14% Similarity=0.351 Sum_probs=14.0
Q ss_pred HHHHHhhhhHhHHHHHHHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYE 63 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laE 63 (340)
.+-.||..||..+..|+..|+|
T Consensus 48 ~L~~ri~~Le~~l~~l~~~l~~ 69 (70)
T 1zme_C 48 QLQKDLNDKTEENNRLKALLLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666777777666665543
No 280
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=33.96 E-value=1e+02 Score=28.74 Aligned_cols=75 Identities=20% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 019459 36 RKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSR 115 (340)
Q Consensus 36 rkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~R 115 (340)
+|..-.++.+.++.||+|+..|+..... .+.+|..+++. .+|.. |-..-|+|..
T Consensus 125 fraLEa~L~~v~~~Le~e~~~l~~~~~~---~L~~L~~~i~~---------~~L~~--------------Ll~~~k~L~~ 178 (261)
T 3rkg_A 125 HRALESIFINVMSALETDFKLHSQICIQ---ILNDLENEVNR---------LKLRH--------------LLIKSKDLTL 178 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHSCCH---------HHHHH--------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCH---------HHHHH--------------HHHHhHHHHH
Q ss_pred hHHHHHHHHHHHHhhccccCC
Q 019459 116 DLAKLETFKRQLMQSLNDDNS 136 (340)
Q Consensus 116 DvaKLE~FKk~LmqSLqeD~~ 136 (340)
=..|...++..|..=|.+|++
T Consensus 179 ~~~kv~~vr~~leelLddDeD 199 (261)
T 3rkg_A 179 FYQKTLLIRDLLDELLENDDD 199 (261)
T ss_dssp HHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHH
No 281
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=33.93 E-value=2.8e+02 Score=28.03 Aligned_cols=34 Identities=12% Similarity=0.121 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCC
Q 019459 103 RDSLAMTARNLSRDLAKLETFKRQLMQSLNDDNS 136 (340)
Q Consensus 103 ~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~~ 136 (340)
...|...++.|..++..||.--+.|-..|++--.
T Consensus 73 ~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 73 AKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKIN 106 (485)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888988998888888888777765543
No 282
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=33.77 E-value=65 Score=29.73 Aligned_cols=21 Identities=10% Similarity=0.221 Sum_probs=15.4
Q ss_pred HHHhhhHHHHHHHHHHHHhhc
Q 019459 111 RNLSRDLAKLETFKRQLMQSL 131 (340)
Q Consensus 111 KKL~RDvaKLE~FKk~LmqSL 131 (340)
.++.+-.+.|+.+|+.||+-+
T Consensus 184 ~~~~~~~~~l~~~k~~ll~~~ 204 (464)
T 2y7c_A 184 ARFEQIPQILKRFRQAVLGGA 204 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455677888999999975
No 283
>2vrs_A Sigma-C capsid protein; alpha-helical coiled coil, receptor-binding, triple beta-spiral, viral protein, virion, coiled coil, beta-barrel; 1.75A {Avian reovirus} PDB: 2jjl_A 2bsf_A 2bt7_A 2bt8_A
Probab=33.75 E-value=48 Score=30.45 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=24.2
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQK 80 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~ 80 (340)
.+.|+.|+.++.-|+..+.----.|.+|+.||..||.
T Consensus 3 ~~~v~~~st~v~NlkssVS~~~l~ls~L~~Rv~~le~ 39 (211)
T 2vrs_A 3 QTTVDGNSTAISNLKSDISSNGLAITDLQDRVKSLES 39 (211)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eehhhhchhhhhhhhhhhhhhhhhhhhHHHHHHHHhc
Confidence 4567777777777777777777777777777776653
No 284
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=33.69 E-value=1.5e+02 Score=26.49 Aligned_cols=48 Identities=8% Similarity=0.185 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 33 DLARKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQE 84 (340)
Q Consensus 33 dlArkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e 84 (340)
+|-|.|+..|.. .|.+||.++..|..+|.-.......+++. ||..|.+
T Consensus 124 E~ireli~~Aer-tV~kLqkeiD~LEDeL~~eKek~k~i~~e---LDqTl~e 171 (175)
T 3mud_A 124 EVIRELICYCLD-TTAKNEKSIDDLEEKVAHAKEENLNMHQM---LDQTLLE 171 (175)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 466777777764 47888888888888775555555555444 4444444
No 285
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=33.65 E-value=34 Score=21.86 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 54 TGTMRQMLYEKDRLICELEERLSHVQ 79 (340)
Q Consensus 54 ~~~LR~~laEKd~~i~~Lq~r~~~le 79 (340)
+++|+++-+.-...|+.|+=.+..||
T Consensus 2 irrlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 34566655555555555555554443
No 286
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=33.37 E-value=1.3e+02 Score=21.54 Aligned_cols=28 Identities=32% Similarity=0.560 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 95 DNAKLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 95 e~~kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
||-.|..+-.+|...+-.|.-++++||.
T Consensus 18 dnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 18 DNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 3333444444555566666666666664
No 287
>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
Probab=33.11 E-value=26 Score=26.56 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=17.3
Q ss_pred cCCHHHHHHHHHHHHHHhh
Q 019459 286 RLSYEQFSAFLASIKELNA 304 (340)
Q Consensus 286 RLSYEQFsaFLANIKELNA 304 (340)
-|+.|||.+|.++|-+.++
T Consensus 43 sL~~~qw~~l~~~~~~I~~ 61 (66)
T 1pcf_A 43 SLNPEQWSQLKEQISDIDD 61 (66)
T ss_dssp EECHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHH
Confidence 4899999999999999875
No 288
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=33.02 E-value=2e+02 Score=23.47 Aligned_cols=37 Identities=11% Similarity=0.201 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 53 ETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKL 89 (340)
Q Consensus 53 E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl 89 (340)
|-..|=+....-+.++..|++++.+|-..|.++...+
T Consensus 5 e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~ 41 (125)
T 1joc_A 5 ERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAV 41 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555567777777777777666555444
No 289
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.01 E-value=66 Score=31.67 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 99 LAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 99 L~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
|.-|++-|-+..++|++++.+++.
T Consensus 61 L~~e~e~l~~~~~~~~~e~~~~~e 84 (428)
T 4b4t_K 61 LTLQEDYIKDEQRHLKRELKRAQE 84 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555566666666655543
No 290
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=32.87 E-value=1.8e+02 Score=22.78 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 019459 67 LICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQL 127 (340)
Q Consensus 67 ~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~L 127 (340)
.+.+++.|-..||..++.+..+|..+..++..+..|-..|..+. ---+..|--|+..|
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L---d~KI~eL~elRqgL 71 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL---DVSLFELSELREGL 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHH
Confidence 34555666666666666666666665555555555544444332 22333444554443
No 291
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=32.85 E-value=2.2e+02 Score=23.83 Aligned_cols=52 Identities=13% Similarity=0.120 Sum_probs=28.7
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFI 93 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~ 93 (340)
.+...-..|..+...|...+........+|+.++..|+..-.+...++.-..
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444545566666655555555455555666666666655555555554443
No 292
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=32.80 E-value=1.4e+02 Score=21.66 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019459 63 EKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTA 110 (340)
Q Consensus 63 EKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~Tv 110 (340)
-|...+.+|+.++..|+..-.+....+.. |..|...|-..+
T Consensus 20 rKk~~~~~Le~~v~~L~~~n~~L~~ei~~-------L~~e~~~Lk~~l 60 (63)
T 2wt7_A 20 RRRELTDTLQAETDQLEDEKSALQTEIAN-------LLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 45667888888888777655555555433 555555554443
No 293
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=32.73 E-value=2.8e+02 Score=25.14 Aligned_cols=12 Identities=25% Similarity=0.351 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhh
Q 019459 119 KLETFKRQLMQS 130 (340)
Q Consensus 119 KLE~FKk~LmqS 130 (340)
+|..||..|+.-
T Consensus 238 Rl~~lk~~l~~~ 249 (337)
T 2x3v_A 238 RLVFLKEVLLDI 249 (337)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455566665543
No 294
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=32.63 E-value=1.4e+02 Score=21.43 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 019459 64 KDRLICELEERLSHVQ 79 (340)
Q Consensus 64 Kd~~i~~Lq~r~~~le 79 (340)
|...+.+|+.+|..|+
T Consensus 20 Kk~~~~~LE~~v~~L~ 35 (55)
T 1dh3_A 20 KKEYVKSLENRVAVLE 35 (55)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4577788888776433
No 295
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=32.57 E-value=86 Score=22.78 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 019459 71 LEERLSHVQKVYQEADSKLKIFIDDN 96 (340)
Q Consensus 71 Lq~r~~~le~~L~e~~~rl~~a~de~ 96 (340)
-++++..||+.|..+.-+++..+|||
T Consensus 12 ~Rkk~eeler~lrk~kk~iKklEdeN 37 (50)
T 1a92_A 12 GRKKLEELERDLRKLKKKIKKLEEDN 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 37788888888888877776655554
No 296
>3rrr_B Fusion glycoprotein F0; six-helix bundle, membrane fusion, viral protein; HET: NAG; 2.82A {Human respiratory syncytial virus} PDB: 3rrt_B
Probab=32.33 E-value=2.3e+02 Score=27.95 Aligned_cols=63 Identities=16% Similarity=0.258 Sum_probs=48.5
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKL 120 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKL 120 (340)
.+....+.++.+||..+.+=.+.|.+|+.=+..+=.+++...+-+ |+.|.-++.+|..+++-+
T Consensus 9 ~~a~~Na~~I~~Lk~si~~TN~AV~~l~~~~~~~~~Av~~lQd~I-------------N~~i~Pain~l~C~v~~~ 71 (374)
T 3rrr_B 9 SKVLHLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYI-------------DKQLLPIVNKQSCSISNI 71 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHTHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHhhhhhhhhcchHhHHh
Confidence 356788999999999999999999999998888877777766655 445566666666666543
No 297
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=32.10 E-value=2.4e+02 Score=28.44 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCC
Q 019459 102 ERDSLAMTARNLSRDLAKLETFKRQLMQSLNDDNSS 137 (340)
Q Consensus 102 E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~~~ 137 (340)
+...|...+|.|..++..||.--+.+-..|++.-..
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~ 152 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALR 152 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556888999999999999988888887777766443
No 298
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=32.09 E-value=1.1e+02 Score=24.24 Aligned_cols=16 Identities=31% Similarity=0.343 Sum_probs=6.7
Q ss_pred HhHHHHHHHHHHHHHH
Q 019459 91 IFIDDNAKLAKERDSL 106 (340)
Q Consensus 91 ~a~de~~kL~~E~~sL 106 (340)
-|++||++|-++...|
T Consensus 43 eaL~EN~~Lh~~ie~l 58 (83)
T 1uii_A 43 EALKENEKLHKEIEQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444443333
No 299
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=31.83 E-value=75 Score=23.46 Aligned_cols=13 Identities=15% Similarity=0.307 Sum_probs=6.6
Q ss_pred hhhhHhHHHHHHH
Q 019459 47 VSKLETETGTMRQ 59 (340)
Q Consensus 47 Vs~LE~E~~~LR~ 59 (340)
+..||.++..|..
T Consensus 32 ~~~Le~~v~~L~~ 44 (63)
T 2dgc_A 32 MKQLEDKVEELLS 44 (63)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555543
No 300
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=31.69 E-value=1.4e+02 Score=22.77 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=10.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHH
Q 019459 50 LETETGTMRQMLYEKDRLICELEER 74 (340)
Q Consensus 50 LE~E~~~LR~~laEKd~~i~~Lq~r 74 (340)
|+.|...++..+.+.+..+.+++..
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e 27 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRAR 27 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 301
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=31.42 E-value=35 Score=32.81 Aligned_cols=33 Identities=9% Similarity=0.098 Sum_probs=12.5
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHV 78 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~l 78 (340)
+|.+||..|..+..++..-...+..++++|..|
T Consensus 5 ~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L 37 (319)
T 1fzc_C 5 EIMKYEASILTHDSSIRYLQEIYNSNNQKIVNL 37 (319)
T ss_dssp -----CTTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555444444334444444444433
No 302
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=31.22 E-value=68 Score=21.54 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=6.4
Q ss_pred HhhhhHhHHHHHH
Q 019459 46 RVSKLETETGTMR 58 (340)
Q Consensus 46 RVs~LE~E~~~LR 58 (340)
||++||..+..|=
T Consensus 1 RMnQLEdKVEell 13 (33)
T 2wq1_A 1 RMKQLEDKIEENT 13 (33)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHH
Confidence 4555555544443
No 303
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=30.91 E-value=2.8e+02 Score=25.34 Aligned_cols=54 Identities=20% Similarity=0.203 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 019459 58 RQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSR 115 (340)
Q Consensus 58 R~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~R 115 (340)
|..|.|-=..+..|.++|..++.++. +|+.-.++...|+.+-.-|+..+++|..
T Consensus 107 R~AL~eaLeEN~~Lh~~ie~l~eEi~----~LkeEn~eLkeLae~~q~la~vi~~l~~ 160 (209)
T 2wvr_A 107 RKALYEALKENEKLHKEIEQKDNEIA----RLKKENKELAEVAEHVQYMAELIERLNG 160 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444445556666666666554443 2222233344466666666666666643
No 304
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=30.59 E-value=78 Score=25.97 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHV 78 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~l 78 (340)
|-.|+-.||+|-=-|=.++...+-.|.+|..||..|
T Consensus 54 Lh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 54 LWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
No 305
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=30.56 E-value=61 Score=23.40 Aligned_cols=31 Identities=13% Similarity=0.184 Sum_probs=17.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 019459 86 DSKLKIFIDDNAKLAKERDSLAMTARNLSRD 116 (340)
Q Consensus 86 ~~rl~~a~de~~kL~~E~~sLa~TvKKL~RD 116 (340)
++=|.+..++-+.|.+||..|-..++.|...
T Consensus 26 D~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 26 NEFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555666777777777776666543
No 306
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=30.52 E-value=1.1e+02 Score=21.75 Aligned_cols=8 Identities=50% Similarity=0.605 Sum_probs=4.6
Q ss_pred hhhHHHHH
Q 019459 30 DQLDLARK 37 (340)
Q Consensus 30 EQLdlArk 37 (340)
|||.||-|
T Consensus 5 Eq~ALA~k 12 (46)
T 2rr9_C 5 EQFALALK 12 (46)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56665544
No 307
>1g5g_A Fusion protein; NDV, paramyxovirus; HET: NAG BMA; 3.30A {Newcastle disease virus} SCOP: f.12.1.1 h.3.2.1 PDB: 3maw_A*
Probab=30.30 E-value=53 Score=33.47 Aligned_cols=75 Identities=15% Similarity=0.178 Sum_probs=21.4
Q ss_pred hHHH--HHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019459 32 LDLA--RKITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMT 109 (340)
Q Consensus 32 LdlA--rkIts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~T 109 (340)
|.|| -.||+-+--.+..+.++++.+||..++.-.+.+.+|..-++.+=.+++...+-+ |+.|.-+
T Consensus 96 LGVATaAqiTAavAL~~a~~na~~I~~lk~si~~tn~Av~~l~~~~~~~~~av~~~q~~i-------------n~~i~p~ 162 (481)
T 1g5g_A 96 LGVATAAQITAASALIQANQNAANILRLKESIAATNEAVHEVTNGLSQLAVAVGKMQQFV-------------NDQFNKT 162 (481)
T ss_dssp --------------------------------------------CHHHHHHHHHHHHHHH-------------HHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHhhhh
Confidence 5565 678888888889999999999999999999999999999998888887776666 3345555
Q ss_pred HHHHhhhHHH
Q 019459 110 ARNLSRDLAK 119 (340)
Q Consensus 110 vKKL~RDvaK 119 (340)
+.+|..+++.
T Consensus 163 i~~l~C~v~~ 172 (481)
T 1g5g_A 163 AQELDCIKIT 172 (481)
T ss_dssp HHHHHHHHHH
T ss_pred hhhcchHHHH
Confidence 5555555544
No 308
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=30.21 E-value=1.9e+02 Score=23.67 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=5.8
Q ss_pred HHHHHHHHhhhHHH
Q 019459 106 LAMTARNLSRDLAK 119 (340)
Q Consensus 106 La~TvKKL~RDvaK 119 (340)
|..-|+.||..|..
T Consensus 72 lqgEI~~Lnq~Lqd 85 (99)
T 3ni0_A 72 LENEVTKLNQELEN 85 (99)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 309
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=30.00 E-value=3.4e+02 Score=28.11 Aligned_cols=49 Identities=12% Similarity=0.166 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 38 ITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEAD 86 (340)
Q Consensus 38 Its~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~ 86 (340)
|.+.++..+-..+|..+..||....+.++.+..|++.-+.++-.+++..
T Consensus 5 ~~~~~~~~~~~eI~~~v~~l~~~~q~~e~~~k~Le~~Qe~F~~~y~~~~ 53 (585)
T 1y1u_A 5 VLVDAMSQKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQESL 53 (585)
T ss_dssp ------CCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3445555666677777778887777777777777777776666665554
No 310
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=29.97 E-value=2.8e+02 Score=24.38 Aligned_cols=28 Identities=21% Similarity=0.192 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 62 YEKDRLICELEERLSHVQKVYQEADSKL 89 (340)
Q Consensus 62 aEKd~~i~~Lq~r~~~le~~L~e~~~rl 89 (340)
++.|+...++.+..+.||.-+-++...|
T Consensus 132 ~~~D~~~~e~~e~kn~le~~i~~~~~~l 159 (227)
T 1u00_A 132 AEQDVKARMLAEQKVEAARVLESLHGAL 159 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555554444444
No 311
>3pwx_A Putative flagellar HOOK-associated protein; structural genomics, structural protein, PSI-2, protein STRU initiative; 2.50A {Vibrio parahaemolyticus}
Probab=29.70 E-value=3e+02 Score=24.53 Aligned_cols=68 Identities=19% Similarity=0.197 Sum_probs=42.6
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH------HHHHHHHHHHHHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLA------KERDSLAMTARNL 113 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~------~E~~sLa~TvKKL 113 (340)
|.+.+..+|.+++..|.+-. +-+.+...++...|.+|.+...-|.++.+--..-. .+|.+++..++.|
T Consensus 8 ~~~a~~~~l~~~i~~l~q~~----~N~~~a~s~l~~ae~aL~~i~~~l~r~rel~vqa~ngt~s~~dr~ai~~E~~~l 81 (239)
T 3pwx_A 8 MASIKLLNLERENSAIAQYQ----SNIANLKTTLSSQETHLDSVSESLKSMRDIVLWGANGSLTDQDRSGMITELKSY 81 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 34566777788887777653 45666677778888888888887766554332221 3455555554444
No 312
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=29.62 E-value=62 Score=30.51 Aligned_cols=52 Identities=13% Similarity=0.069 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhhh---hHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 019459 34 LARKITSMAIASRVSK---LETETGTMRQMLYEK----DRLICELEERLSHVQKVYQEA 85 (340)
Q Consensus 34 lArkIts~A~atRVs~---LE~E~~~LR~~laEK----d~~i~~Lq~r~~~le~~L~e~ 85 (340)
+...-+.-+|..-+.. -|.+...+.+++.++ ...++.|+++...|+.++.+.
T Consensus 146 ~~~~y~~~~Y~~fl~~~d~~~~~~~e~~~~~~~~~n~~~~eie~L~~~~~~L~eEi~~L 204 (315)
T 2ve7_A 146 LFLDYTIKCYESFMSGADSFDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARL 204 (315)
T ss_dssp HHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556555544 223334444444432 334555555555555554444
No 313
>3rki_A Fusion glycoprotein F0; fusion protein, viral protein; HET: NAG; 3.20A {Human respiratory syncytial virus}
Probab=29.51 E-value=1e+02 Score=31.71 Aligned_cols=54 Identities=19% Similarity=0.259 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 38 ITSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 38 Its~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
||+-+--.++...++++.+|+..++.=.+.+.+|..-++.|=.+++...+-++.
T Consensus 139 ITAavAL~qA~qNA~nIlrLKeSI~~TNeAV~elt~gls~lavAV~~lQd~IN~ 192 (528)
T 3rki_A 139 IASGVAVSKVLHLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDK 192 (528)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444567889999999999999999999999999999998888887776643
No 314
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=29.47 E-value=1.5e+02 Score=27.89 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHhhCCCCh
Q 019459 290 EQFSAFLASIKELNAQKQTREETLRKAEEIFGTDNK 325 (340)
Q Consensus 290 EQFsaFLANIKELNAhkQTREETL~KA~eIFG~eNk 325 (340)
++|.+|-..|+..+.....=++.-....+....+|+
T Consensus 406 ~~~~~~~~el~~~~~~~~~l~~~~~~l~~~~~~~~~ 441 (476)
T 1hci_A 406 NQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNK 441 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCC
Confidence 456666666655555444444444444554444443
No 315
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=29.12 E-value=8.3 Score=31.89 Aligned_cols=99 Identities=22% Similarity=0.255 Sum_probs=41.6
Q ss_pred CCCCchhHHhcCCCCchhhhHHHHHHHHHHHHHHhhhh-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 13 DFHLPDEVLAVIPTDPYDQLDLARKITSMAIASRVSKL-ETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 13 ~f~Lp~eilsvLP~DPyEQLdlArkIts~A~atRVs~L-E~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
-..|+|+-|--||.+=+-++ | ..++.- ..++...|..+--|-.+- .-|.-.++ +..+.......
T Consensus 5 ~~~~sd~~Lv~m~v~elN~~-L----------~~Ls~~e~~~lK~~RR~lKNR~yAq---~CR~rk~~-~~~~LE~e~~~ 69 (107)
T 3a5t_A 5 GTSLTDEELVTMSVRELNQH-L----------RGLSKEEIIQLKQRRRTLKNRGYAA---SCRVKRVT-QKEELEKQKAE 69 (107)
T ss_dssp CCCCCHHHHHHSCHHHHHHT-T----------TTCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHTT
T ss_pred CCCCCHHHHhcCCHHHHHHH-H----------hCCCHHHHHHHHHHHHhhhhHHHHH---HHHHHHHH-HHHHHHHHHHH
Confidence 56789999988988777665 1 112211 122333333332222111 11111111 11122222233
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 019459 92 FIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQ 126 (340)
Q Consensus 92 a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~ 126 (340)
...+.++|..||..|...+..|...+.+|..|-+.
T Consensus 70 L~~e~e~L~~En~~l~~E~~~lk~k~e~L~~~a~s 104 (107)
T 3a5t_A 70 LQQEVEKLASENASMKLELDALRSKYEALQNFART 104 (107)
T ss_dssp TSSTTTTTTSTTSHHHHTTTSSSSCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666666666666665443
No 316
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=29.11 E-value=80 Score=23.82 Aligned_cols=17 Identities=12% Similarity=0.298 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHhh
Q 019459 99 LAKERDSLAMTARNLSR 115 (340)
Q Consensus 99 L~~E~~sLa~TvKKL~R 115 (340)
|.+++..|...+..|.+
T Consensus 52 L~~~~~~l~~e~~~L~~ 68 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 317
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=29.07 E-value=1.7e+02 Score=21.74 Aligned_cols=13 Identities=8% Similarity=0.393 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 019459 67 LICELEERLSHVQ 79 (340)
Q Consensus 67 ~i~~Lq~r~~~le 79 (340)
.++.|.++|..|.
T Consensus 11 tVYaLkDqV~eL~ 23 (56)
T 2w6b_A 11 TVYALKDEVQELR 23 (56)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555443
No 318
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=28.77 E-value=1.6e+02 Score=21.14 Aligned_cols=42 Identities=10% Similarity=0.257 Sum_probs=27.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 50 LETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 50 LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
|+.++..|.+++..=+..++.+...+..+...+.....++..
T Consensus 3 ~~~~~~~le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~~~ 44 (66)
T 3m0a_A 3 LLQRCESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRL 44 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhH
Confidence 566667777777776667777777777666666665555544
No 319
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=28.77 E-value=33 Score=31.37 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=17.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 019459 91 IFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKR 125 (340)
Q Consensus 91 ~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk 125 (340)
...+||++|.+|+..|.....+|..--+..+.+|+
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~ 57 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLESEVADLKKENKDLKE 57 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666555444444444444433
No 320
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=28.71 E-value=2e+02 Score=22.01 Aligned_cols=53 Identities=11% Similarity=0.026 Sum_probs=24.2
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHH
Q 019459 42 AIASRVSKLETETGTMRQMLYEKDRLICELEER---LSHVQKVYQEADSKLKIFID 94 (340)
Q Consensus 42 A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r---~~~le~~L~e~~~rl~~a~d 94 (340)
++...+..|..-...|...|.+=+..+..|+.- --..-.++++.-.+...+.+
T Consensus 15 ~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~ 70 (103)
T 4i0x_B 15 HIEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAAR 70 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555444 22223334444444444333
No 321
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=28.34 E-value=1.3e+02 Score=23.97 Aligned_cols=53 Identities=21% Similarity=0.196 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019459 57 MRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNL 113 (340)
Q Consensus 57 LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL 113 (340)
=|..|.+-=..+..|.+++..++.++.. |+.-.++...|+..-.-|+.-+++|
T Consensus 29 Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~----Lk~en~~L~elA~~~q~la~~i~~L 81 (83)
T 1wlq_A 29 RRKALYEALKENEKLHKEIEQKDSEIAR----LRKENKDLAEVAEHVQYMAEVIERL 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555556667777777766655432 2222222333444444444444443
No 322
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=28.34 E-value=89 Score=28.79 Aligned_cols=20 Identities=10% Similarity=0.398 Sum_probs=15.8
Q ss_pred HHhhhHHHHHHHHHHHHhhc
Q 019459 112 NLSRDLAKLETFKRQLMQSL 131 (340)
Q Consensus 112 KL~RDvaKLE~FKk~LmqSL 131 (340)
++++-+++|+.+|+.||+-+
T Consensus 398 ~~~~~~~~l~~lk~sLL~~a 417 (464)
T 2y7c_A 398 QVNNALARVNNLTQSILAKA 417 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555788999999999976
No 323
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=28.08 E-value=2.6e+02 Score=23.18 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=34.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019459 48 SKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLA 107 (340)
Q Consensus 48 s~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa 107 (340)
-.|=.|+.+||..| +....+=|..|.+|...+.+..+-|........+...|+..|-
T Consensus 18 e~Lkreie~lk~el---e~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr 74 (120)
T 3i00_A 18 ERLYREISGLKAQL---ENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLR 74 (120)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666544 4556666777777777776666666555555555555555544
No 324
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=28.03 E-value=2.1e+02 Score=28.80 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=24.7
Q ss_pred hHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 52 TETGTMRQ---MLYEKDRLICELEERLSHVQKVYQEADSKLK 90 (340)
Q Consensus 52 ~E~~~LR~---~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~ 90 (340)
.|+.++.+ ++++.|+...++.+..+.||.-+-++...|.
T Consensus 510 ~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l~ 551 (605)
T 2kho_A 510 DEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVE 551 (605)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 3355677777777777777777777766664
No 325
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=28.03 E-value=2.7e+02 Score=23.36 Aligned_cols=15 Identities=33% Similarity=0.372 Sum_probs=7.3
Q ss_pred cccHHHHHHHHHHhh
Q 019459 306 KQTREETLRKAEEIF 320 (340)
Q Consensus 306 kQTREETL~KA~eIF 320 (340)
-+.|++-+++-+.=-
T Consensus 164 i~eR~~eI~~IE~sI 178 (196)
T 1fio_A 164 VQARHQELLKLEKSM 178 (196)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555554433
No 326
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=27.94 E-value=74 Score=31.12 Aligned_cols=30 Identities=17% Similarity=0.367 Sum_probs=16.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019459 105 SLAMTARNLSRDLAKLETFKRQLMQSLNDD 134 (340)
Q Consensus 105 sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD 134 (340)
.|...+|.|..++..||.--+.+-..|++-
T Consensus 72 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 72 EIQNRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666555555555444
No 327
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=27.12 E-value=70 Score=26.64 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=24.2
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQ 79 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le 79 (340)
+..|+..|+..+..|...+.++...+..++..+..+.
T Consensus 103 l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 103 LEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777776666666666666655444
No 328
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=26.95 E-value=1.9e+02 Score=25.31 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=28.7
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEERLSHVQ 79 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le 79 (340)
.-+..||.|-.+++..+..|...+.+|..+...+.
T Consensus 5 qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafk 39 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQELILQQIAFK 39 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999988877544
No 329
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=26.81 E-value=1.9e+02 Score=21.31 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=24.4
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQ 79 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le 79 (340)
+...|+..-.....-+.++.|+.+.+..|++|-+.|.
T Consensus 9 v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~ 45 (63)
T 1urq_A 9 VKGAASGVVGELARARLALDERGQKLSDLEERTAAMM 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555666677777788777777777766444
No 330
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=26.65 E-value=1.3e+02 Score=28.51 Aligned_cols=40 Identities=8% Similarity=0.245 Sum_probs=32.1
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 45 SRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQE 84 (340)
Q Consensus 45 tRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e 84 (340)
.|+..|...+..++.++-..|+.+.++-.++-.||+.++.
T Consensus 216 ~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~ 255 (268)
T 2yo3_A 216 QKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIAR 255 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888888888888888888888877653
No 331
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=26.49 E-value=73 Score=26.86 Aligned_cols=62 Identities=27% Similarity=0.356 Sum_probs=30.2
Q ss_pred CCCCchhHHhcCCC---CchhhhHHHHHHHH------HHHHHHhhhhHhHH-------HHHHHHHHHHHHHHHHHHHH
Q 019459 13 DFHLPDEVLAVIPT---DPYDQLDLARKITS------MAIASRVSKLETET-------GTMRQMLYEKDRLICELEER 74 (340)
Q Consensus 13 ~f~Lp~eilsvLP~---DPyEQLdlArkIts------~A~atRVs~LE~E~-------~~LR~~laEKd~~i~~Lq~r 74 (340)
+..+-|.||+---+ .---||.||-.|+- |----|+..|..+. ..-|.++.|||..|..|.++
T Consensus 54 ~LSFVD~~LSk~~~aldekekqlavaneiirslsdevmrneiritslqgdltftkkclenarsqisekdakinklmek 131 (142)
T 1pl5_A 54 GLSFVDIVLSKAASALDEKEKQLAVANEIIRSLSDEVMRNEIRITSLQGDLTFTKKCLENARSQISEKDAKINKLMEK 131 (142)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred cchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHhhheeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 34445556554332 22348888887763 12223444444442 23455566666666555543
No 332
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=26.40 E-value=3.3e+02 Score=23.92 Aligned_cols=8 Identities=38% Similarity=0.729 Sum_probs=4.5
Q ss_pred HHHhhccc
Q 019459 126 QLMQSLND 133 (340)
Q Consensus 126 ~LmqSLqe 133 (340)
.++..||+
T Consensus 209 ~~~~~lQ~ 216 (301)
T 2efk_A 209 QIFDKLQD 216 (301)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45666654
No 333
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=26.34 E-value=1.1e+02 Score=26.03 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHH
Q 019459 97 AKLAKERDSLAMTARNLSRDLAKLET 122 (340)
Q Consensus 97 ~kL~~E~~sLa~TvKKL~RDvaKLE~ 122 (340)
+.|.+.++.|-+-|-+|..+|.+||.
T Consensus 64 eeL~~ki~eL~~kvA~le~e~~~~e~ 89 (125)
T 2pms_C 64 EELSDKIDELDAEIAKLEDQLKAAEE 89 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 44666666677777777666666553
No 334
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=26.19 E-value=2.5e+02 Score=22.32 Aligned_cols=16 Identities=19% Similarity=0.032 Sum_probs=9.5
Q ss_pred HHHHHHHHHhhhhHhH
Q 019459 38 ITSMAIASRVSKLETE 53 (340)
Q Consensus 38 Its~A~atRVs~LE~E 53 (340)
-..-|+..|-...|.+
T Consensus 17 ~aggaFgKrEaA~Ee~ 32 (84)
T 1gmj_A 17 DAGGAFGKREQAEEER 32 (84)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred ccCCCcccHHHHhHHH
Confidence 3445666777777776
No 335
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=26.07 E-value=1.6e+02 Score=24.28 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 97 AKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 97 ~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
.+|.+|+..|-..+++|.+.++..+
T Consensus 35 ~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 35 ERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666666666666666543
No 336
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=26.02 E-value=36 Score=24.44 Aligned_cols=15 Identities=13% Similarity=0.301 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 019459 68 ICELEERLSHVQKVY 82 (340)
Q Consensus 68 i~~Lq~r~~~le~~L 82 (340)
|.+|+++|..|+..|
T Consensus 51 ~~~Le~ri~~Le~~l 65 (72)
T 2er8_A 51 NEAIEKRFKELTRTL 65 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 337
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=25.94 E-value=91 Score=21.06 Aligned_cols=12 Identities=17% Similarity=0.446 Sum_probs=5.7
Q ss_pred HhhhhHhHHHHH
Q 019459 46 RVSKLETETGTM 57 (340)
Q Consensus 46 RVs~LE~E~~~L 57 (340)
||++||..+..|
T Consensus 2 RM~QLEdKVEeL 13 (34)
T 1uo4_A 2 RMKQIEDKGEEI 13 (34)
T ss_dssp -CHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 555555555444
No 338
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=25.80 E-value=3.7e+02 Score=24.20 Aligned_cols=46 Identities=4% Similarity=0.101 Sum_probs=23.5
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
-+++||+.+..-+.+-.-....-.|+-+.|..+=.+-|++++-+.+
T Consensus 69 SlTqL~nrL~~wlsQ~em~~qks~EFSD~~qTaL~eAQ~AtD~y~~ 114 (201)
T 3u0c_A 69 SLTALTNKITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEK 114 (201)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777665555444444455555655554444444444444433
No 339
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=25.75 E-value=4.2e+02 Score=25.83 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=16.9
Q ss_pred HHHHHHHHhhhHHHHHH-HHHHHHhh
Q 019459 106 LAMTARNLSRDLAKLET-FKRQLMQS 130 (340)
Q Consensus 106 La~TvKKL~RDvaKLE~-FKk~LmqS 130 (340)
+...++.|...+.+||. ++.-|+-+
T Consensus 74 a~~e~~~l~~~~~~le~~l~~lLlp~ 99 (354)
T 3d5a_X 74 AKAEREALLARKEALEKELERHLLPK 99 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34567788888888885 66655543
No 340
>1sed_A APC1180, hypothetical protein YHAI; structural genomics, four helix colied-coil, PSI, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.219.1.1
Probab=25.73 E-value=1.1e+02 Score=25.73 Aligned_cols=57 Identities=30% Similarity=0.392 Sum_probs=46.2
Q ss_pred chHHHHHHH-HhcCCHHHHHHHHHHHHHHhhccccHHHHHHHHHH--hhCCCChhHHHHHHHhhcccCC
Q 019459 275 DGKEFFRQA-RSRLSYEQFSAFLASIKELNAQKQTREETLRKAEE--IFGTDNKDLYLYFQGLLNRNVH 340 (340)
Q Consensus 275 DGKEFFRQA-RsRLSYEQFsaFLANIKELNAhkQTREETL~KA~e--IFG~eNkDLY~~FegLL~R~~~ 340 (340)
|.+-||+++ |..|+=++=..||.-+-+||.+-.. .||+- +| ..|+.-|.|.|+-+|+
T Consensus 27 ~k~pFy~lII~~~Ltk~eve~il~lce~L~~el~~-----QKaeGfv~F----~~Ll~~Fag~L~~~L~ 86 (117)
T 1sed_A 27 DRYPFYALLIDKGLSKEEGEAVMRICDELSEELAT-----QKAQGFVTF----DKLLALFAGQLNEKLD 86 (117)
T ss_dssp TTCHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH-----HHHTTCCCC----HHHHHHHHHHSCTTSC
T ss_pred ccCCHHHHHHHccCcHHHHHHHHHHHHHHHHHHHH-----HHhcchhhH----HHHHHHHHhhccccCC
Confidence 578899986 8899999999999999999998543 35554 34 4799999999988764
No 341
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=25.69 E-value=41 Score=21.90 Aligned_cols=28 Identities=39% Similarity=0.432 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhhcc-ccHHHHHHHHH
Q 019459 290 EQFSAFLASIKELNAQK-QTREETLRKAE 317 (340)
Q Consensus 290 EQFsaFLANIKELNAhk-QTREETL~KA~ 317 (340)
+|.+|.||.+.--|.|. -.-||.|.|+-
T Consensus 2 dqlnallasleaenkqlkakveellakvg 30 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLAKVG 30 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 68899999998888774 34577777753
No 342
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=25.43 E-value=81 Score=25.84 Aligned_cols=43 Identities=12% Similarity=0.230 Sum_probs=20.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 49 KLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKI 91 (340)
Q Consensus 49 ~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~ 91 (340)
.|..-+..|=+.+..=+..-++|+.+|..-+.++.+.+.|.+.
T Consensus 46 ~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~d 88 (106)
T 1j1d_B 46 QLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRIND 88 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHH
Confidence 3333344444444444444455555555555555555555443
No 343
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=25.18 E-value=3.6e+02 Score=23.91 Aligned_cols=102 Identities=10% Similarity=0.163 Sum_probs=62.5
Q ss_pred CCCCchhhhH-HHHHH---HHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Q 019459 24 IPTDPYDQLD-LARKI---TSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEA-------------- 85 (340)
Q Consensus 24 LP~DPyEQLd-lArkI---ts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~-------------- 85 (340)
+|..|.|||= |-.+= +--+++...-.||.|-..||..-+|+|......+.++..|-..|..-
T Consensus 2 m~~yple~~~~~k~~r~e~aek~~~~k~~~le~ek~~l~~~e~~r~k~~~h~~~k~~qlre~~d~gtt~~~i~~m~~yI~ 81 (169)
T 3k29_A 2 MVRYPLEPVLSIKKDRVDRAEKVVKEKRRLLELEQEKLRERESERDKVKNHYMQKIRQLREQLDDGTTSDAILKMKAYIK 81 (169)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 5888889863 22221 34567788889999999999999999988777777776665443320
Q ss_pred --HHH---HHH-hHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHH
Q 019459 86 --DSK---LKI-FIDDNAKLAKERDSLAMTAR---NLSRDLAKLETFKR 125 (340)
Q Consensus 86 --~~r---l~~-a~de~~kL~~E~~sLa~TvK---KL~RDvaKLE~FKk 125 (340)
..| +.+ +.+-..++..++..|...-+ .-.++++|++.-|+
T Consensus 82 llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~eKfelHrq 130 (169)
T 3k29_A 82 VVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEKTRLHKE 130 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001 111 11122345555555554433 44567788877766
No 344
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=25.17 E-value=86 Score=24.10 Aligned_cols=30 Identities=17% Similarity=0.351 Sum_probs=27.5
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 019459 276 GKEFFRQARSRLSYEQFSAFLASIKELNAQ 305 (340)
Q Consensus 276 GKEFFRQARsRLSYEQFsaFLANIKELNAh 305 (340)
=+.|.+|||..-=||.-.-.=.|++||+..
T Consensus 32 I~~yI~qAk~~~r~DEV~tLe~NLrEL~~e 61 (69)
T 1z0k_B 32 ITSFIRQAKAAGRMDEVRTLQENLRQLQDE 61 (69)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 377999999999999999999999999864
No 345
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=25.05 E-value=4.5e+02 Score=25.55 Aligned_cols=63 Identities=19% Similarity=0.247 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH--------HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCC
Q 019459 74 RLSHVQKVYQEADSKLKIFIDDNAKLA--------KERDSLAMTARNLSRDLAKLETFKRQLMQSLNDDNS 136 (340)
Q Consensus 74 r~~~le~~L~e~~~rl~~a~de~~kL~--------~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~~ 136 (340)
++..||....+...++.....+..++. ++...|...+|.|..++..||.--+.+-..|++--.
T Consensus 29 ~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (421)
T 1ses_A 29 ALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLL 99 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444 345678888999999999998888877777766544
No 346
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=24.89 E-value=1.6e+02 Score=20.83 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=6.7
Q ss_pred HHHHhhhhHhHHHH
Q 019459 43 IASRVSKLETETGT 56 (340)
Q Consensus 43 ~atRVs~LE~E~~~ 56 (340)
++-|+|..|+.-..
T Consensus 12 LA~rmSeQEA~~vn 25 (45)
T 3a1q_C 12 LALKMSEQEAREVN 25 (45)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHhh
Confidence 33455555554333
No 347
>2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium}
Probab=24.89 E-value=3.5e+02 Score=23.68 Aligned_cols=49 Identities=12% Similarity=0.073 Sum_probs=29.8
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDD 95 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de 95 (340)
...+..+|.+++..|.+-. +-+.+-..++...|.+|.+...-|.++.+-
T Consensus 7 ~~a~~~~l~~~~~~l~q~~----~n~~~~~s~l~~ae~aL~~i~~~l~r~rel 55 (248)
T 2d4x_A 7 AASQAVVLSQAQAQNSQYA----LARTFATQKVSLEESVLSQVTTAIQTAQEK 55 (248)
T ss_dssp -----CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777877776653 445556666777788888777777665443
No 348
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=24.83 E-value=60 Score=24.15 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 71 LEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 71 Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
|..+++..-..|.+...+-.-.-.+-.++.+|-|.|.+..-++.++.-+||
T Consensus 6 L~~~IE~kR~eL~~l~~k~Gl~~~~vI~~SQeLD~LIn~Y~k~~~~~~~~~ 56 (62)
T 2bzb_A 6 LKNKIENKKKELIQLVARHGLDHDKVLLFSRDLDKLINKFMNVKDKVHKLE 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTCCCCCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcccchhh
Confidence 333334334444444444444455556788888888888777665544443
No 349
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=24.62 E-value=1.6e+02 Score=20.75 Aligned_cols=58 Identities=12% Similarity=0.191 Sum_probs=43.2
Q ss_pred HHHHHHHHh--cCCHHHHHHHH----HHHHH-HhhccccHHHHHHHHHHhhCCCChhHHHHHHHh
Q 019459 277 KEFFRQARS--RLSYEQFSAFL----ASIKE-LNAQKQTREETLRKAEEIFGTDNKDLYLYFQGL 334 (340)
Q Consensus 277 KEFFRQARs--RLSYEQFsaFL----ANIKE-LNAhkQTREETL~KA~eIFG~eNkDLY~~FegL 334 (340)
++.+++.|. .||.++|+..+ +.|-. .|....-.-++|.+.-++||-.-.||+..+...
T Consensus 14 ~~~l~~~r~~~gltq~~lA~~~gvs~~~is~~e~g~~~~~~~~~~~ia~~l~v~~~~l~~~l~~~ 78 (80)
T 3kz3_A 14 KAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKVSVEEFSPSIARE 78 (80)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTCHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHhHHHHhh
Confidence 456777775 48999998876 35555 466666677999999999998877877666544
No 350
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=24.58 E-value=5.8e+02 Score=26.07 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019459 92 FIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSLNDD 134 (340)
Q Consensus 92 a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD 134 (340)
+..|..||.+|.+.|...++.|..-|+.-+.+++-+..-|.+-
T Consensus 452 T~~e~~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~i 494 (514)
T 2inr_A 452 TNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEI 494 (514)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3457799999999999999999998888777777776666544
No 351
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=24.49 E-value=1.4e+02 Score=28.39 Aligned_cols=15 Identities=20% Similarity=0.027 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 019459 68 ICELEERLSHVQKVY 82 (340)
Q Consensus 68 i~~Lq~r~~~le~~L 82 (340)
+.+|+++++.++..|
T Consensus 256 ~~~~~~~~~~~~~~~ 270 (426)
T 1lrz_A 256 RDILNKDLNKALKDI 270 (426)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 334444444444444
No 352
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=24.47 E-value=1.6e+02 Score=22.30 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=6.4
Q ss_pred HHHHHhhhhHhH
Q 019459 42 AIASRVSKLETE 53 (340)
Q Consensus 42 A~atRVs~LE~E 53 (340)
||+.++..|..|
T Consensus 6 aiKkkmqaLk~E 17 (75)
T 3mtu_A 6 AIKKKMQMLKLD 17 (75)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 556565554443
No 353
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=24.39 E-value=6.6e+02 Score=26.65 Aligned_cols=43 Identities=19% Similarity=0.101 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 019459 92 FIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLMQSLNDD 134 (340)
Q Consensus 92 a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD 134 (340)
+..|..||.+|.+.|...++.|..-|+.-+.+++.+..-|.+-
T Consensus 635 t~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i 677 (692)
T 2xcs_B 635 TGLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEI 677 (692)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3456799999999999999999999998887777777766544
No 354
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=24.22 E-value=1.2e+02 Score=24.71 Aligned_cols=51 Identities=8% Similarity=0.134 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhhhhH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 34 LARKITSMAIASRVSKLE--------TETGTMRQMLYEKDRLICELEERLSHVQKVYQE 84 (340)
Q Consensus 34 lArkIts~A~atRVs~LE--------~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e 84 (340)
+.--+-.+=+|.|+..+. .....|+.++.+..+.+..|++++..||.+|..
T Consensus 56 ~~eTl~TL~fa~rak~i~n~~~~n~~~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~ 114 (117)
T 3kin_B 56 EAETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNR 114 (117)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCceecCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566777766543 345778888888888889999999998887754
No 355
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=24.22 E-value=1.6e+02 Score=19.65 Aligned_cols=30 Identities=20% Similarity=0.301 Sum_probs=12.9
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 47 VSKLETETGTMRQMLYEKDRLICELEERLS 76 (340)
Q Consensus 47 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~ 76 (340)
|+.|...+..|+.+..----.+..|.++++
T Consensus 3 vsalkekvsalkeqflmlmfkvsalkekvs 32 (36)
T 3tq2_A 3 VSALKEKVSALKEQFLMLMFKVSALKEKVS 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555444332233334444444
No 356
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=24.13 E-value=1.3e+02 Score=23.36 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=22.3
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQ 79 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le 79 (340)
-..|..||..+..+++....-.--|.+||.+|..|+
T Consensus 7 ~nsVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~ 42 (74)
T 1avy_A 7 TNKIKAIETDIASVRQEVNTAKGNISSLQGDVQALQ 42 (74)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhcccccchhhhheeeccccchhhhhhhhhHHHH
Confidence 345777887777777766555555555555555444
No 357
>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation, repressor, transcript repressor; 3.10A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=24.02 E-value=87 Score=26.98 Aligned_cols=62 Identities=27% Similarity=0.356 Sum_probs=31.0
Q ss_pred CCCCchhHHhcCCC---CchhhhHHHHHHHH------HHHHHHhhhhHhHH-------HHHHHHHHHHHHHHHHHHHH
Q 019459 13 DFHLPDEVLAVIPT---DPYDQLDLARKITS------MAIASRVSKLETET-------GTMRQMLYEKDRLICELEER 74 (340)
Q Consensus 13 ~f~Lp~eilsvLP~---DPyEQLdlArkIts------~A~atRVs~LE~E~-------~~LR~~laEKd~~i~~Lq~r 74 (340)
+..+-|.||+---+ .---||.||-.|+- |----|+..|..+. ..-|.++.|||..|..|.++
T Consensus 78 ~LSFVD~~LSk~~~aldekekqlavaneiirslsdevmrneiritslqgdltftkkclenarsqisekdakinklmek 155 (166)
T 1nyh_A 78 GLSFVDIVLSKAASALDEKEKQLAVANEIIRSLSDEVMRNEIRITSLQGDLTFTKKCLENARSQISEKDAKINKLMEK 155 (166)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred cchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhheeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 34445566554332 22348888887763 22223444444442 23455666666666555544
No 358
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=23.93 E-value=4.3e+02 Score=24.39 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=32.7
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKL 99 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL 99 (340)
|..||+-|=.|++.+=...+.+-+....--+.|-..|..|+....+=....++.+||
T Consensus 67 IsdklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~svqp~R~~R~~l~~~I~kL 123 (234)
T 3plt_A 67 VTDKLGVLIYELGELQDQFIDKYDQYRVTLKSIRNIEASVQPSRDRKEKITDEIAHL 123 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 345666666666666666666665555555555555555555555544444444444
No 359
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=23.64 E-value=1.2e+02 Score=26.14 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 019459 79 QKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSR 115 (340)
Q Consensus 79 e~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~R 115 (340)
...=+.|..+|..|.|.-+||.|-|.++..+++=.+-
T Consensus 51 ~~kk~~Aekql~~Ake~~eKlkKKrsSv~gs~~~aHs 87 (136)
T 3ter_A 51 EKQRQDCFKEMKEAIEMVDRLQKKQGSVLSSLKLATG 87 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCS
T ss_pred HHccccHHHHHHHHHHHHHHHHHhhhchheeeeeecC
Confidence 3444677888889999999999999888877654443
No 360
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A
Probab=23.45 E-value=19 Score=30.65 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=36.9
Q ss_pred CCCchhHHhcCCCCchhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHH
Q 019459 14 FHLPDEVLAVIPTDPYDQLDLARKITSMAIASRVSKLETETGTMRQMLY 62 (340)
Q Consensus 14 f~Lp~eilsvLP~DPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~la 62 (340)
-.=|+||+++=|.|=|++|.|..-++ .+|.+.|.+=+.++|....
T Consensus 94 G~tp~eIl~~d~~~f~~~lGL~~~LS----psR~nGl~am~~~ik~~a~ 138 (141)
T 3g0m_A 94 QMTAQDIVHFDVRPWFEKMALAQHLT----PSRSQGLEAMIRAIRAKAA 138 (141)
T ss_dssp TCBHHHHHHCCCHHHHHHHTCGGGSC----HHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHhCCHHHHHHHcCchhhcC----chHHHHHHHHHHHHHHHHH
Confidence 34589999987777889999987765 6899999999999887653
No 361
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=23.43 E-value=2.7e+02 Score=21.76 Aligned_cols=20 Identities=5% Similarity=0.061 Sum_probs=12.3
Q ss_pred HHHHhhhhHhHHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLY 62 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~la 62 (340)
+-..|..+..++..|+..+.
T Consensus 10 F~~~v~~I~~~i~~i~~~v~ 29 (127)
T 1ez3_A 10 FFEQVEEIRGFIDKIAENVE 29 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666554
No 362
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=23.28 E-value=2.7e+02 Score=21.74 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHhhhHHH-HHH
Q 019459 77 HVQKVYQEADSKLKIFIDDNAKL---AKERDSLAMTARNLSRDLAK-LET 122 (340)
Q Consensus 77 ~le~~L~e~~~rl~~a~de~~kL---~~E~~sLa~TvKKL~RDvaK-LE~ 122 (340)
.+|..|.||..=|.+-.-|...+ ...|..+.+.|+.-.+||.+ |..
T Consensus 38 ~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~ 87 (97)
T 3onj_A 38 HVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKR 87 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444445 25678888888888888888 743
No 363
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=23.17 E-value=2.6e+02 Score=22.55 Aligned_cols=62 Identities=8% Similarity=0.147 Sum_probs=28.5
Q ss_pred HHHHhhhhHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019459 43 IASRVSKLETETGTMRQMLY-----EKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLS 114 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~la-----EKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~ 114 (340)
.+....+|-.|+..||..+. +-=+.-+-|+.++..|..+|...+.. |...+.+...+|+||.
T Consensus 21 ~a~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~----------l~~~k~~F~~~~~~~~ 87 (93)
T 3sjb_C 21 LSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDE----------IQSENKAFQAHLHKLE 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHC-----
T ss_pred hHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHh
Confidence 34455555555555555442 11223345566666555555544433 3445556666666553
No 364
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=23.12 E-value=32 Score=25.20 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019459 64 KDRLICELEERLSHVQKVYQEA 85 (340)
Q Consensus 64 Kd~~i~~Lq~r~~~le~~L~e~ 85 (340)
+...|..|++||..||..|.+.
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 3456888888888888777654
No 365
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=22.92 E-value=1.2e+02 Score=20.51 Aligned_cols=12 Identities=17% Similarity=0.257 Sum_probs=5.3
Q ss_pred HhhhhHhHHHHH
Q 019459 46 RVSKLETETGTM 57 (340)
Q Consensus 46 RVs~LE~E~~~L 57 (340)
||++||..+..|
T Consensus 2 RMnQLEdKVEeL 13 (34)
T 3c3f_A 2 RMXQIEXKLEXI 13 (34)
T ss_dssp CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 444554444333
No 366
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=22.91 E-value=93 Score=25.97 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 019459 70 ELEERLSHVQKVYQEADSKLKIF 92 (340)
Q Consensus 70 ~Lq~r~~~le~~L~e~~~rl~~a 92 (340)
+|..+-..|+.+++.....|..+
T Consensus 4 ~L~~~~~~L~~~i~~l~~~L~~l 26 (122)
T 3viq_A 4 QLLSRRLKLEKEVRNLQEQLITA 26 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666655555543
No 367
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=22.77 E-value=1.2e+02 Score=25.76 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019459 69 CELEERLSHVQKVYQEADSKLK 90 (340)
Q Consensus 69 ~~Lq~r~~~le~~L~e~~~rl~ 90 (340)
.+|+.++..|+....++.--+.
T Consensus 64 eeL~~ki~eL~~kvA~le~e~~ 85 (125)
T 2pms_C 64 EELSDKIDELDAEIAKLEDQLK 85 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 4455555544444444444443
No 368
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=22.42 E-value=3.6e+02 Score=22.93 Aligned_cols=63 Identities=13% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHhhhHHHHHHHHHHH
Q 019459 65 DRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDS-----LAMTARNLSRDLAKLETFKRQL 127 (340)
Q Consensus 65 d~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~s-----La~TvKKL~RDvaKLE~FKk~L 127 (340)
...+..|+..+..||+....+...-+....+..+..+..+. +|..+-+..+.+.+|=.+|=+|
T Consensus 13 r~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l 80 (179)
T 2gd5_A 13 NEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHM 80 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 369
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=22.40 E-value=3.2e+02 Score=22.27 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019459 70 ELEERLSHVQKVYQEADSKL 89 (340)
Q Consensus 70 ~Lq~r~~~le~~L~e~~~rl 89 (340)
+|-+++..||.+-=|...++
T Consensus 53 eLh~~I~~LEeEKYDlE~kv 72 (106)
T 1j1d_B 53 ELWQTIYNLEAEKFDLQEKF 72 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHH
Confidence 33333444444333333333
No 370
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=22.39 E-value=2.7e+02 Score=21.42 Aligned_cols=31 Identities=13% Similarity=0.121 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019459 70 ELEERLSHVQKVYQEADSKLKIFIDDNAKLA 100 (340)
Q Consensus 70 ~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~ 100 (340)
+|...|..|..++.|.+.+|..+.++..++.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555544
No 371
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=22.36 E-value=4.3e+02 Score=23.83 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=16.1
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRLICELEERL 75 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~ 75 (340)
...+..|+.++..|+.++.--.+...-+++|.
T Consensus 65 ~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~ 96 (213)
T 4ani_A 65 KAQIAELEAKLSEMEHRYLRLYADFENFRRRT 96 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544444444444443
No 372
>4eba_G RNA15, KLLA0F09383P; HAT domain, heat repeat, monkeytail, CLP1, PCF11, structural RNA binding protein complex; 3.30A {Kluyveromyces lactis}
Probab=22.31 E-value=1e+02 Score=27.32 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=41.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhccccHHHHHHHHHHhhCCCChhHHHHHHHhhcccC
Q 019459 279 FFRQARSRLSYEQFSAFLASIKELNAQKQTREETLRKAEEIFGTDNKDLYLYFQGLLNRNV 339 (340)
Q Consensus 279 FFRQARsRLSYEQFsaFLANIKELNAhkQTREETL~KA~eIFG~eNkDLY~~FegLL~R~~ 339 (340)
=.-++=+.|+.+|.-.+|+++|.+-.+--. +|.++|..--.--|..||.||.-++
T Consensus 46 ~IS~~Ls~lpp~QL~eiL~qmK~l~~~nP~------~ar~LL~~nPQLayAl~QAlL~mgi 100 (174)
T 4eba_G 46 CISSELGKLQKDQQMALLKVIQHFCKDDKE------TFVALLEEAPQLSYAIAELLLSNGV 100 (174)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHGGGC--C------CHHHHHHSCTHHHHHHHHHHHHTSC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHhCHH------HHHHHHHHCchHHHHHHHHHHHhCC
Confidence 445667889999999999999999775433 2788887655556999999987553
No 373
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=22.22 E-value=2.4e+02 Score=22.49 Aligned_cols=26 Identities=12% Similarity=0.049 Sum_probs=11.3
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHHH
Q 019459 46 RVSKLETETGTMRQMLYEKDRLICEL 71 (340)
Q Consensus 46 RVs~LE~E~~~LR~~laEKd~~i~~L 71 (340)
|..+|...+..|...+....+....|
T Consensus 16 RkkkL~~Ki~el~~ei~ke~~~regl 41 (98)
T 2ke4_A 16 QRKRLQQQLEERSRELQKEVDQREAL 41 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433333333
No 374
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=22.14 E-value=1.9e+02 Score=23.61 Aligned_cols=53 Identities=21% Similarity=0.339 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhccccHHHHHHHHHHhhCCCChhHHHH
Q 019459 277 KEFFRQARSRLSYEQFSAFLASIKELNAQKQTREETLRKAEEIFGTDNKDLYLY 330 (340)
Q Consensus 277 KEFFRQARsRLSYEQFsaFLANIKELNAhkQTREETL~KA~eIFG~eNkDLY~~ 330 (340)
++|---.|+.|+.+.-..|.+=|.+.+.- ..=+|--.|--+++|++-|.|...
T Consensus 19 qdYM~~L~~~L~~~ElqqFA~Llr~YR~G-~~I~~Fc~kLl~LyG~~Rk~LL~g 71 (98)
T 4fqn_A 19 QDYMLTLRTKLSSQEIQQFAALLHEYRNG-ASIHEFCINLRQLYGDSRKFLLLG 71 (98)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHCGGGGGGGGG
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhchHHHHHHhh
Confidence 67888889999999999999999999998 688999999999999999988643
No 375
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=21.86 E-value=1.2e+02 Score=27.40 Aligned_cols=57 Identities=9% Similarity=0.133 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 019459 70 ELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETFKRQLM 128 (340)
Q Consensus 70 ~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~FKk~Lm 128 (340)
.|+.-.-.||+++..+...=+....+..+.++..+. ..+|-|.++|-+...-+..|.
T Consensus 18 ~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~--~~arilAkelVR~Rk~~~rl~ 74 (218)
T 3frt_A 18 KIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQK--DVCIVLAKEMIRSRKAVSKLY 74 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666555555444444455555554432 334555555554444444443
No 376
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=21.83 E-value=1.2e+02 Score=22.02 Aligned_cols=29 Identities=17% Similarity=0.415 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 019459 277 KEFFRQARSRLSYEQFSAFLASIKELNAQ 305 (340)
Q Consensus 277 KEFFRQARsRLSYEQFsaFLANIKELNAh 305 (340)
+.|.+|||..-=||.-.-.=.|++||+..
T Consensus 15 ~~~I~qAk~~~r~DEV~~Le~NLrEL~~e 43 (51)
T 1yzm_A 15 TSFIRQAKAAGRMDEVRTLQENLRQLQDE 43 (51)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999865
No 377
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=21.79 E-value=81 Score=25.37 Aligned_cols=6 Identities=33% Similarity=0.573 Sum_probs=2.2
Q ss_pred hhHhHH
Q 019459 49 KLETET 54 (340)
Q Consensus 49 ~LE~E~ 54 (340)
+|+.+.
T Consensus 11 ~l~~~~ 16 (109)
T 2wg5_A 11 QLEDKV 16 (109)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 378
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=21.79 E-value=4.8e+02 Score=27.08 Aligned_cols=40 Identities=10% Similarity=0.116 Sum_probs=23.4
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 47 VSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEAD 86 (340)
Q Consensus 47 Vs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~ 86 (340)
...+|..+..||....+-++.|..|++.-+.++-.+++..
T Consensus 4 ~~~i~~~~~~l~~~~q~~e~~~k~Le~~Qe~f~~~y~~~~ 43 (575)
T 1bf5_A 4 QKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQ 43 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3445556666666666666666666665555555555554
No 379
>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
Probab=21.67 E-value=5.5e+02 Score=24.73 Aligned_cols=86 Identities=13% Similarity=0.137 Sum_probs=45.2
Q ss_pred hhhhHHHHHHHHH----HHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----
Q 019459 29 YDQLDLARKITSM----AIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKL----- 99 (340)
Q Consensus 29 yEQLdlArkIts~----A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL----- 99 (340)
.+||-=+.||.+- |...+..+|.++++.|.+-..- +.+-...+...|.+|.+...-|.++.|--..-
T Consensus 9 qeqLSSGkRInsaSDDPag~aia~~L~sqi~~l~Q~~rN----~~da~S~LqtAE~AL~~i~diLqrmRELaVQAaNgT~ 84 (326)
T 3k8w_A 9 LQRLSSGLRINSAKDDAAGLAISDRMTAQIKGLTQAQRN----ANDGISLAQTAEGALGEISNNLQRIRELAVQASNGTN 84 (326)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred HHHHhhcCccCCcccCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4677777888654 4677778888888888776443 45555666677777777777666654433222
Q ss_pred -HHHHHHHHHHHHHHhhhHH
Q 019459 100 -AKERDSLAMTARNLSRDLA 118 (340)
Q Consensus 100 -~~E~~sLa~TvKKL~RDva 118 (340)
..+|..|+..++.|...+.
T Consensus 85 s~~DR~aIa~Ei~qL~~eI~ 104 (326)
T 3k8w_A 85 TQTDRDALQAEVTQLQSEIQ 104 (326)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 2456666666655554443
No 380
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=21.58 E-value=2.6e+02 Score=21.05 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019459 55 GTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLA 107 (340)
Q Consensus 55 ~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa 107 (340)
-.++..|+--+..|.+|.+=-+.|-.+|.-...++ .+|+.||.+|.
T Consensus 16 levK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~l-------q~LQsen~~Lr 61 (63)
T 2w6a_A 16 LELKKALATSEAKVQQLMKVNSSLSDELRKLQREI-------HKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHH-------HHHHhhhhhhc
Confidence 34666777777777777777666666665555555 55888888774
No 381
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=21.36 E-value=2.7e+02 Score=26.97 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH------------
Q 019459 56 TMRQMLYEKDRLI-CELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLET------------ 122 (340)
Q Consensus 56 ~LR~~laEKd~~i-~~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~------------ 122 (340)
..|+.+.++-..+ ..++.-...|+..-.+++..+.. -.++-+.|+.++.+||+.+.+.|.
T Consensus 64 ~~R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~-------~V~~iN~l~~qIa~LN~qI~~~~~~~~g~~~ndLlD 136 (463)
T 2d4y_A 64 AARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGS-------SVAQINNYAKQIANLNDQISRMTGVGAGASPNDLLD 136 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHC--------CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHhHH
Confidence 3466666554332 23333333333333444444444 566677777777777777776553
Q ss_pred HHHHHHhhcc
Q 019459 123 FKRQLMQSLN 132 (340)
Q Consensus 123 FKk~LmqSLq 132 (340)
=|-.|+.-|.
T Consensus 137 qRD~ll~eLS 146 (463)
T 2d4y_A 137 QRDQLVSELN 146 (463)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3456777763
No 382
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=21.33 E-value=2.4e+02 Score=21.77 Aligned_cols=15 Identities=20% Similarity=0.135 Sum_probs=10.1
Q ss_pred hhhHhHHHHHHHHHH
Q 019459 48 SKLETETGTMRQMLY 62 (340)
Q Consensus 48 s~LE~E~~~LR~~la 62 (340)
..||+=+-.+|..|.
T Consensus 7 N~aE~~iy~~e~~L~ 21 (113)
T 1ud0_A 7 HMLESYAFNMKATVE 21 (113)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 456666777777775
No 383
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=21.12 E-value=3.9e+02 Score=24.45 Aligned_cols=17 Identities=6% Similarity=0.030 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019459 75 LSHVQKVYQEADSKLKI 91 (340)
Q Consensus 75 ~~~le~~L~e~~~rl~~ 91 (340)
..++...|.++...+..
T Consensus 194 ~~s~~~~~~~~~~~~~~ 210 (228)
T 3q0x_A 194 RDSMVAQLAQCRQQLAQ 210 (228)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 384
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=21.12 E-value=3.3e+02 Score=25.00 Aligned_cols=45 Identities=27% Similarity=0.325 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 019459 70 ELEERLSHVQKVYQEADSKLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLE 121 (340)
Q Consensus 70 ~Lq~r~~~le~~L~e~~~rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE 121 (340)
-|..|+..+-..|...+++|.+ ...|++++...+-.-.|.+|.|.
T Consensus 168 yLa~R~~~lK~kl~~l~~~L~~-------~~~e~~s~~~~~~~~~~~~~~~~ 212 (228)
T 3q0x_A 168 FLAFRLSEVKGTCHDLSDDLSR-------TRDDRDSMVAQLAQCRQQLAQLR 212 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444445533 45566666666666666666653
No 385
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=21.08 E-value=2.8e+02 Score=21.05 Aligned_cols=47 Identities=6% Similarity=0.133 Sum_probs=31.4
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 019459 44 ASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLKIFIDDNA 97 (340)
Q Consensus 44 atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~~a~de~~ 97 (340)
..|+..++.|+..||.+.+.-...|.+...|+. |..-|+.+.+--|+
T Consensus 9 ~~~Ld~i~~el~eLq~~~~~~~aki~e~krkl~-------eLsHRiLkvlv~QE 55 (65)
T 3t97_B 9 QTRLDIISEDISELQKNQTTTMAKIAQYKRKLM-------DLSHRTLQVLIKQE 55 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHH
Confidence 457777888888888887777777777766655 44446655544443
No 386
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=20.57 E-value=3.2e+02 Score=21.64 Aligned_cols=11 Identities=45% Similarity=0.628 Sum_probs=4.5
Q ss_pred hHHHHHHHHHH
Q 019459 92 FIDDNAKLAKE 102 (340)
Q Consensus 92 a~de~~kL~~E 102 (340)
|++||++|.++
T Consensus 36 aL~EN~~Lh~~ 46 (83)
T 1wlq_A 36 ALKENEKLHKE 46 (83)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 387
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=20.48 E-value=51 Score=30.26 Aligned_cols=13 Identities=0% Similarity=0.061 Sum_probs=6.9
Q ss_pred HHHHHHhhhhHhH
Q 019459 41 MAIASRVSKLETE 53 (340)
Q Consensus 41 ~A~atRVs~LE~E 53 (340)
+++-..+.++...
T Consensus 91 l~~~r~l~~~l~~ 103 (250)
T 2ve7_C 91 SNLVTHLDSFLPI 103 (250)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555554
No 388
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=20.44 E-value=5.5e+02 Score=27.14 Aligned_cols=44 Identities=9% Similarity=0.140 Sum_probs=29.5
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 43 IASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEAD 86 (340)
Q Consensus 43 ~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~ 86 (340)
+..+-..+|..+..||..+.+-++.+..|+..-..++-.+++..
T Consensus 135 ~~~~~~~i~~~v~~lr~~~q~~e~~ik~Le~~Qe~f~~~y~~~~ 178 (683)
T 1yvl_A 135 MLDKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQ 178 (683)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777777887777777777777766666665555443
No 389
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=20.43 E-value=3.7e+02 Score=22.30 Aligned_cols=16 Identities=13% Similarity=0.133 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 019459 95 DNAKLAKERDSLAMTA 110 (340)
Q Consensus 95 e~~kL~~E~~sLa~Tv 110 (340)
|++.|+.+...|...+
T Consensus 91 eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 91 KKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 390
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=20.28 E-value=4.7e+02 Score=23.48 Aligned_cols=90 Identities=17% Similarity=0.139 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhhhHhHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHH
Q 019459 32 LDLARKITSMAIASRVSKLETETGTM--RQMLYEK-DRLICELEERLSHVQKVYQE---ADSKLKIFIDDNAKLAKERDS 105 (340)
Q Consensus 32 LdlArkIts~A~atRVs~LE~E~~~L--R~~laEK-d~~i~~Lq~r~~~le~~L~e---~~~rl~~a~de~~kL~~E~~s 105 (340)
|+-+-.-.-.|...|-..|-.|+.+| -+.|++| ++.+...++.+...+..| + ......+|++--+.+..+-..
T Consensus 98 i~~~W~~Le~ae~eRe~aL~~el~RlerLe~La~kf~rka~~~e~~L~~~~~~L-~~d~~~l~~~~a~k~~e~ie~dL~~ 176 (235)
T 2odv_A 98 VEKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQMEAGLAEEQLNQADALL-QSDVRLLAAGKVPQRAGEVERDLDK 176 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTTTCCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhcchhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhHHHHHH
Q 019459 106 LAMTARNLSRDLAKLET 122 (340)
Q Consensus 106 La~TvKKL~RDvaKLE~ 122 (340)
+-.-|+.|.-|+..|..
T Consensus 177 ~e~~i~~l~~~a~~L~~ 193 (235)
T 2odv_A 177 ADSMIRLLFNDVQTLKD 193 (235)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
No 391
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=20.27 E-value=2.5e+02 Score=24.93 Aligned_cols=37 Identities=5% Similarity=0.012 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccC
Q 019459 99 LAKERDSLAMTARNLSRDLAKLETFKRQLMQSLNDDN 135 (340)
Q Consensus 99 L~~E~~sLa~TvKKL~RDvaKLE~FKk~LmqSLqeD~ 135 (340)
+.+-++.....|.++|+.-.+.+.--..+++.||+=+
T Consensus 186 ~~~a~~~Y~~~v~~~n~~~~~~~~~~p~~~~~~Q~le 222 (290)
T 3i2w_A 186 VQKCREKYEQAIAEITKYNSVYIEDMTSVFEKCQTFE 222 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4444566666777777666666655566655555544
No 392
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=20.27 E-value=81 Score=25.11 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=8.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHH
Q 019459 50 LETETGTMRQMLYEKDRLICEL 71 (340)
Q Consensus 50 LE~E~~~LR~~laEKd~~i~~L 71 (340)
|++++..|..+..+-+..|.++
T Consensus 6 L~~~i~~L~~q~~~L~~ei~~~ 27 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSLQDA 27 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 393
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Probab=20.21 E-value=76 Score=25.51 Aligned_cols=25 Identities=12% Similarity=0.413 Sum_probs=20.7
Q ss_pred hHHHHHHHHh-----cCCHHHHHHHHHHHH
Q 019459 276 GKEFFRQARS-----RLSYEQFSAFLASIK 300 (340)
Q Consensus 276 GKEFFRQARs-----RLSYEQFsaFLANIK 300 (340)
=++||+.+=. +++|++|-.|+.++.
T Consensus 154 ~~~~~~~~D~~d~dg~Is~~EF~~~~~~~~ 183 (204)
T 3e3r_A 154 LRRFLDNFDSSEKDGQVTLAEFQDYYSGVS 183 (204)
T ss_dssp HHHHHHHHSCSSCCSCEEHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCCcCcHHHHHHHHHHcC
Confidence 4678888753 799999999999877
No 394
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=20.16 E-value=3.1e+02 Score=21.32 Aligned_cols=52 Identities=15% Similarity=0.150 Sum_probs=34.1
Q ss_pred HHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019459 39 TSMAIASRVSKLETETGTMRQMLYEKDRLICELEERLSHVQKVYQEADSKLK 90 (340)
Q Consensus 39 ts~A~atRVs~LE~E~~~LR~~laEKd~~i~~Lq~r~~~le~~L~e~~~rl~ 90 (340)
+-.++..-+..-|.||++|+.-++=|..-..-|.+.+-+|--+-.-..+||.
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~ 70 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLS 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHH
Confidence 4456666666777888888887777777777777666665554444444543
No 395
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=20.07 E-value=3.7e+02 Score=23.08 Aligned_cols=91 Identities=21% Similarity=0.203 Sum_probs=51.6
Q ss_pred CCCCCch--hHHhcCCCCchhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 019459 12 PDFHLPD--EVLAVIPTDPYDQLDLARKITSMAIASRVSKLETETGTMRQMLYEKD--RLICELEERLSHVQKVYQEADS 87 (340)
Q Consensus 12 ~~f~Lp~--eilsvLP~DPyEQLdlArkIts~A~atRVs~LE~E~~~LR~~laEKd--~~i~~Lq~r~~~le~~L~e~~~ 87 (340)
-||+||. |=.-+-|-.|-|-+ .||..-..++..+|.-+.+|+ .....|+-++..|-..|--..+
T Consensus 27 rd~~l~~~k~~f~~~~l~~~~a~------------~rIk~~a~~i~~vk~lI~k~~W~~vrn~LR~~~~~Lr~Dl~~li~ 94 (149)
T 1vyk_A 27 RDGTLPYTKDRFYLQPLPPTEAA------------QRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVIS 94 (149)
T ss_dssp -------CTTCCEECCCCHHHHH------------HHHHHHHHHHHTTHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCccccccccccCCCCHHHHH------------HHHHHHHHHHHHHHHHhhhccHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4777775 33333344444433 355555555566665554443 4566788888877766655554
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 019459 88 KLKIFIDDNAKLAKERDSLAMTARNLSRDLAKLETF 123 (340)
Q Consensus 88 rl~~a~de~~kL~~E~~sLa~TvKKL~RDvaKLE~F 123 (340)
.+ +-++|..|....++|-.+|++|.--
T Consensus 95 sl---------p~~~kk~l~~La~~Lf~~le~LD~A 121 (149)
T 1vyk_A 95 AK---------PKDEKKSLQELTSKLFSSIDNLDHA 121 (149)
T ss_dssp HS---------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hC---------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 5677778888888888888887643
Done!