BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019461
(340 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q810L3|CHFR_MOUSE E3 ubiquitin-protein ligase CHFR OS=Mus musculus GN=Chfr PE=1 SV=1
Length = 664
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 89/230 (38%), Gaps = 61/230 (26%)
Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNH 189
E C IC ++ HD V++ PC+H FC C+S W+ RS LCP CR V+ + +NH
Sbjct: 299 ETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSS------LCPTCRCPVERICKNH 352
Query: 190 YLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLV---IRNGKKHRRKRAH-----SP 241
L+N+ ++ L H RS+E+V +D+ I +++ +R + S
Sbjct: 353 ILNNLVEAYLIQHPDKSRSEEDVRSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSD 412
Query: 242 IDEESDSIE-------------------LPCPQCGTEING-------------------- 262
+D ES I LPCP +E+
Sbjct: 413 VDSESSDISQPYIVCRQCPEYRRQAVQSLPCPVPESELGATLALGGEAPSTSASLPTAAP 472
Query: 263 -FHCNQTTVHLQCQGCGGMMPSRNDS-------VPQHCLGCDRAFCGAYW 304
+ C H C C MP R PQ C C + FC YW
Sbjct: 473 DYMCPLQGSHAICTCCFQPMPDRRAEREQDPRVAPQQCAVCLQPFCHLYW 522
>sp|Q96EP1|CHFR_HUMAN E3 ubiquitin-protein ligase CHFR OS=Homo sapiens GN=CHFR PE=1 SV=2
Length = 664
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 88/234 (37%), Gaps = 70/234 (29%)
Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNH 189
E C IC ++ HD V++ PC+H FC C+S W+ RS LCP CR V+ + +NH
Sbjct: 300 ETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSS------LCPTCRCPVERICKNH 353
Query: 190 YLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNL------------------------ 225
L+N+ ++ L H RS+E+V +D+ I ++
Sbjct: 354 ILNNLVEAYLIQHPDKSRSEEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSD 413
Query: 226 -------------VIRNGKKHRRKRAHSP---------------IDEESDSIELPCPQCG 257
V R ++RR+ A P D S S+ L
Sbjct: 414 VDSESSDISQPYVVCRQCPEYRRQAAQPPHCPAPEGEPGAPQALGDAPSTSVSL-----T 468
Query: 258 TEINGFHCNQTTVHLQCQGCGGMMPSRNDS-------VPQHCLGCDRAFCGAYW 304
T + + C H C C MP R PQ C C + FC YW
Sbjct: 469 TAVQDYVCPLQGSHALCTCCFQPMPDRRAEREQDPRVAPQQCAVCLQPFCHLYW 522
>sp|Q5RF77|CHFR_PONAB E3 ubiquitin-protein ligase CHFR OS=Pongo abelii GN=CHFR PE=2 SV=1
Length = 571
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 88/228 (38%), Gaps = 59/228 (25%)
Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNH 189
E C IC ++ HD V++ PC+H FC C+S W+ RS LCP CR V+ + +NH
Sbjct: 208 ETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSS------LCPTCRCPVERICKNH 261
Query: 190 YLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLV---IRNGKKHRRKRAH-----SP 241
L+N+ ++ L H RS+E+V +D+ I +++ +R + S
Sbjct: 262 ILNNLVEAYLIQHPDKSRSEEDVQSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSD 321
Query: 242 IDEESDSIELP---CPQCG-----------------------------------TEINGF 263
+D ES I P C QC T + +
Sbjct: 322 VDSESSDISQPYVVCRQCPEYRRQAAQPPPCPAPEGEPGVPQALVDAPSTSVSLTTVQDY 381
Query: 264 HCNQTTVHLQCQGCGGMMPSRNDS-------VPQHCLGCDRAFCGAYW 304
C H C C MP R PQ C C + FC YW
Sbjct: 382 VCPLQGSHALCTCCFQPMPDRRAEREQNPRVAPQQCAVCLQPFCHLYW 429
>sp|A5WW08|CHFR_DANRE E3 ubiquitin-protein ligase CHFR OS=Danio rerio GN=chfr PE=2 SV=1
Length = 637
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 92/236 (38%), Gaps = 74/236 (31%)
Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNH 189
E C IC ++ +D ++V PC+H FC C+S W+ RS CP CR V+ + +NH
Sbjct: 273 ESLTCIICQDLLYDCISVQPCMHTFCAACYSGWMERSS------FCPTCRCPVERIRKNH 326
Query: 190 YLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLVIRNGKKHRRKRAHSPIDEESDSI 249
L+N+ ++ L H R+++++ +D+ N + ++ + + +R+ S DEE+ S
Sbjct: 327 ILNNLVEAYLLQHPEKCRTEDDLRSMDA-----RNKITQDMLQPKVERSFS--DEEASSD 379
Query: 250 EL---------------------PCPQCGTEING-------------------------- 262
L CP E++
Sbjct: 380 YLFELSDNDSDISDMSQPYMMCRQCPGYRKELSSALWICESAQSESLAKTAGDGPSTSSD 439
Query: 263 --------FHCNQTTVHLQCQGCGGMMPSRN------DSVPQHCLGCDRAFCGAYW 304
F C HL C C MP R PQHCL C + FC YW
Sbjct: 440 STTAAPQEFRCPPQASHLICTCCLQPMPDRRFEHLPPQVSPQHCLVCQKPFCHVYW 495
>sp|Q5FWP4|CHFR_XENLA E3 ubiquitin-protein ligase CHFR OS=Xenopus laevis GN=chfr PE=1
SV=1
Length = 625
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 85/228 (37%), Gaps = 59/228 (25%)
Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNH 189
E C IC + HD V++ PC+H FC C+S W+ RS LCP CR V+ + +NH
Sbjct: 262 ETLTCIICQELLHDCVSLQPCMHTFCAACYSGWMERSS------LCPTCRCPVERICKNH 315
Query: 190 YLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLV---IRNGKKHRRKRAH-----SP 241
L+N+ ++ L H RS+E+ +D+ I +++ +R + S
Sbjct: 316 ILNNLVEAYLIQHPEKCRSEEDRCSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSD 375
Query: 242 IDEESDSIELP---CPQC-----------------------------------GTEINGF 263
+D ES I P C QC T +
Sbjct: 376 VDSESSDISQPYTVCRQCPGFVRHSMQPPPYPPPSDTETSRTQGDAPSTSTNFPTATQEY 435
Query: 264 HCNQTTVHLQCQGCGGMMPSRNDS-------VPQHCLGCDRAFCGAYW 304
C H+ C C MP R PQ C C FC YW
Sbjct: 436 VCPSHGSHVICTCCFQPMPDRRAEREHNSHVAPQQCTICLEPFCHMYW 483
>sp|Q6P256|CHFR_XENTR E3 ubiquitin-protein ligase CHFR OS=Xenopus tropicalis GN=chfr PE=2
SV=1
Length = 626
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 85/228 (37%), Gaps = 59/228 (25%)
Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNH 189
E C IC + HD V++ PC+H FC C+S W+ RS LCP CR V+ + +NH
Sbjct: 263 ETLTCIICQELLHDCVSLQPCMHTFCAACYSGWMERSS------LCPTCRCPVERICKNH 316
Query: 190 YLHNIEQSILQAHSSLRRSDEEVALLDSYAYIKSNLV---IRNGKKHRRKRAH-----SP 241
L+N+ ++ L H RS+E+ +D+ I +++ +R + S
Sbjct: 317 ILNNLVEAYLIQHPEKCRSEEDRCSMDARNKITQDMLQPKVRRSFSDEEGSSEDLLELSD 376
Query: 242 IDEESDSIELP---CPQC-----------------------------------GTEINGF 263
+D ES I P C QC T +
Sbjct: 377 VDSESSDISQPYTVCRQCPGYVRHNIQPPPYPPPSDTEASRTQGDAPSTSTNFPTATQEY 436
Query: 264 HCNQTTVHLQCQGCGGMMPSRNDS-------VPQHCLGCDRAFCGAYW 304
C H+ C C MP R PQ C C FC YW
Sbjct: 437 VCPSHGSHVICTCCFQPMPDRRAEREHNSHVAPQQCTICLEPFCHMYW 484
>sp|P29836|ICP0_BHV1K E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.2 (strain
K22) GN=BICP0 PE=3 SV=1
Length = 676
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183
E CCICL+ PCLH FC C WL E R T CP C+A VQ
Sbjct: 9 ELGSCCICLDAITGAARALPCLHAFCLACIRRWL----EGRPT--CPLCKAPVQ 56
>sp|P29128|ICP0_BHV1J E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.1 (strain
Jura) GN=BICP0 PE=3 SV=1
Length = 676
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183
E CCICL+ PCLH FC C WL E R T CP C+A VQ
Sbjct: 9 ELGSCCICLDAITGAARALPCLHAFCLACIRRWL----EGRPT--CPLCKAPVQ 56
>sp|Q14258|TRI25_HUMAN E3 ubiquitin/ISG15 ligase TRIM25 OS=Homo sapiens GN=TRIM25 PE=1
SV=2
Length = 630
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSE-WLRRSQEKRSTVLCPHCRAVVQF---V 185
E C ICL + + VT PC HNFC C +E W + S LCP CRAV Q +
Sbjct: 9 EELSCSICLEPFKEPVTT-PCGHNFCGSCLNETWAVQG----SPYLCPQCRAVYQARPQL 63
Query: 186 GRNHYLHNIEQSILQA 201
+N L N+ + LQA
Sbjct: 64 HKNTVLCNVVEQFLQA 79
>sp|Q2YDF9|PCGF1_BOVIN Polycomb group RING finger protein 1 OS=Bos taurus GN=PCGF1 PE=2
SV=2
Length = 259
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 110 FKVVPVQESSNQQLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEK 169
+K+ P++ +++I EH CC+C + D T+ CLH FC C ++L+ S+
Sbjct: 23 YKMDPLRNEEEVRVKIKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSK-- 80
Query: 170 RSTVLCPHCRAVVQFVG--RNHYLHNIEQSIL 199
CP C + NH L + Q I+
Sbjct: 81 ----YCPMCNIKIHETQPLLNHKLDRVMQDIV 108
>sp|Q9BSM1|PCGF1_HUMAN Polycomb group RING finger protein 1 OS=Homo sapiens GN=PCGF1 PE=1
SV=2
Length = 259
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 110 FKVVPVQESSNQQLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEK 169
+K+ P++ +++I EH CC+C + D T+ CLH FC C ++L+ S+
Sbjct: 23 YKMDPLRNEEEVRVKIKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSK-- 80
Query: 170 RSTVLCPHC 178
CP C
Sbjct: 81 ----YCPMC 85
>sp|Q8R023|PCGF1_MOUSE Polycomb group RING finger protein 1 OS=Mus musculus GN=Pcgf1 PE=2
SV=2
Length = 259
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 110 FKVVPVQESSNQQLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEK 169
+K+ P++ +++I EH CC+C + D T+ CLH FC C ++L+ S+
Sbjct: 23 YKMDPLRNEEEVRVKIKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSK-- 80
Query: 170 RSTVLCPHC 178
CP C
Sbjct: 81 ----YCPMC 85
>sp|Q6DLV9|PCGF1_RAT Polycomb group RING finger protein 1 (Fragment) OS=Rattus
norvegicus GN=Pcgf1 PE=2 SV=1
Length = 243
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 110 FKVVPVQESSNQQLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEK 169
+K+ P++ +++I EH CC+C + D T+ CLH FC C ++L+ S+
Sbjct: 11 YKMDPLRNEEEVRVKIKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQTSK-- 68
Query: 170 RSTVLCPHC 178
CP C
Sbjct: 69 ----YCPMC 73
>sp|Q7T308|RN168_DANRE E3 ubiquitin-protein ligase RNF168 OS=Danio rerio GN=rnf168 PE=2
SV=1
Length = 474
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 15/86 (17%)
Query: 114 PVQESSNQQLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTV 173
PV+ESS + C +CL I+ + VT+ PC+H FC CF E + +S +
Sbjct: 11 PVEESSG-----GLKRSDCVCPVCLEIFLEPVTL-PCMHTFCKPCFLETV-----DKSNM 59
Query: 174 LCPHCRAVV----QFVGRNHYLHNIE 195
CP CR V + RN L N+E
Sbjct: 60 CCPLCRKRVSTWARLNSRNKTLVNME 85
>sp|Q6PJ69|TRI65_HUMAN Tripartite motif-containing protein 65 OS=Homo sapiens GN=TRIM65
PE=2 SV=3
Length = 517
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCR 179
E C ICL ++ D VT+ PC HNFC C +W R + CP CR
Sbjct: 8 EKLTCAICLGLYQDPVTL-PCGHNFCGACIRDWWDRCGKA-----CPECR 51
>sp|Q61510|TRI25_MOUSE E3 ubiquitin/ISG15 ligase TRIM25 OS=Mus musculus GN=Trim25 PE=2
SV=2
Length = 634
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 124 EISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSE-WLRRSQEKRSTVLCPHCRAVV 182
E++ E C +CL ++ + VT PC HNFC C E W+ + R CP CR V
Sbjct: 3 ELNPLAEELSCSVCLELFKEPVTT-PCGHNFCMSCLDETWVVQGPPYR----CPQCRKVY 57
Query: 183 QF---VGRNHYLHNIEQSILQAHSSLRRSDE 210
Q + +N + + + LQA + D+
Sbjct: 58 QVRPQLQKNTVMCAVVEQFLQAEQARTPVDD 88
>sp|P09309|IE61_VZVD E3 ubiquitin-protein ligase IE61 OS=Varicella-zoster virus (strain
Dumas) GN=61 PE=1 SV=1
Length = 467
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGR 187
D C IC++ D+ PCLH+FC C W S V CP CR VQ +
Sbjct: 13 DASDNTCTICMSTVSDLGKTMPCLHDFCFVCIRAWTSTS------VQCPLCRCPVQSI-- 64
Query: 188 NHYLHNI 194
LH I
Sbjct: 65 ---LHKI 68
>sp|Q7ZYZ7|PCGF1_DANRE Polycomb group RING finger protein 1 OS=Danio rerio GN=pcgf1 PE=3
SV=1
Length = 261
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 110 FKVVPVQESSNQQLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEK 169
+K+ P++ +++I EH C +C + D T+ CLH FC C ++L+ S+
Sbjct: 21 YKLDPLRNEEEVKIKIKDLNEHIVCYLCAGYFIDATTITECLHTFCKSCIVKYLQTSK-- 78
Query: 170 RSTVLCPHC 178
CP C
Sbjct: 79 ----YCPMC 83
>sp|Q5ACX1|RAD5_CANAL DNA repair protein RAD5 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=RAD5 PE=3 SV=1
Length = 1084
Score = 43.1 bits (100), Expect = 0.003, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 130 EHAKCCICLN--IWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVV 182
E +C IC I + + V PC H FC C E L +E + LCP+CR+ +
Sbjct: 812 EENECSICTQVPIPYSEMVVTPCAHTFCLSCILEHLDFQKELKKEKLCPNCRSPI 866
>sp|Q6CJM4|RAD5_KLULA DNA repair protein RAD5 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RAD5 PE=3 SV=1
Length = 1114
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 145 VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVV 182
V++ CLH FC C +E++ Q K+ ++ CP+CR +
Sbjct: 872 VSITECLHTFCEPCLAEYIEFQQNKKLSINCPYCRMPI 909
>sp|Q80Z37|TOPRS_MOUSE E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1
SV=1
Length = 1033
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 10/107 (9%)
Query: 74 AILVDDTMVQNEEVVDIKCGTEIIPGPDREVYLNFRFKVVPVQESSNQQLEISIDIE-HA 132
++L + N V +EI+ +E ++ P +S Q + D +
Sbjct: 46 SLLSRRELASNGPAVPATASSEIMASAAKEFKMD---NFSPKAGTSKLQQTVPADASPDS 102
Query: 133 KCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCR 179
KC ICL+ + +V + CLH FC C EW + E CP C+
Sbjct: 103 KCPICLDRFDNVSYLDRCLHKFCFRCVQEWSKNKAE------CPLCK 143
>sp|Q12161|PSH1_YEAST RING finger protein PSH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PSH1 PE=1 SV=1
Length = 406
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFV 185
IE C IC + V + PC HN+C GC + W + +K + CP CR+ + +
Sbjct: 25 IESLVCSICHDYMF-VPMMTPCGHNYCYGCLNTWFASNTQKE--LACPQCRSDITTI 78
>sp|Q8BTQ0|PCGF3_MOUSE Polycomb group RING finger protein 3 OS=Mus musculus GN=PcgF3 PE=2
SV=1
Length = 241
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 131 HAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVV------QF 184
H C +C D TV CLH FC C ++L E+ +T CP CR V+ Q+
Sbjct: 14 HITCRLCSGYLIDATTVTECLHTFCRSCLVKYL----EENNT--CPTCRIVIHQSHPLQY 67
Query: 185 VGRNHYLHNI 194
+G + + +I
Sbjct: 68 IGHDRTMQDI 77
>sp|A6NK02|TRI75_HUMAN Putative tripartite motif-containing protein 75 OS=Homo sapiens
GN=TRIM75 PE=5 SV=2
Length = 468
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 16/91 (17%)
Query: 132 AKCCICLNIWHDVVTVAPCLHNFCNGCFSE-WLRRSQEKRSTVLCPHCRAVVQFVGRNHY 190
AKC ICL+ D VT+ C HNFC C + WL + + CP CR Q H+
Sbjct: 14 AKCSICLDYLSDPVTIE-CGHNFCRSCIQQSWL----DLQELFPCPVCRHQCQ---EGHF 65
Query: 191 LHNIE-------QSILQAHSSLRRSDEEVAL 214
N + +LQ+ S +R EE L
Sbjct: 66 RSNTQLGRMIEIAKLLQSTKSNKRKQEETTL 96
>sp|Q28H21|PCGF1_XENTR Polycomb group RING finger protein 1 OS=Xenopus tropicalis GN=pcgf1
PE=2 SV=1
Length = 259
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 110 FKVVPVQESSNQQLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEK 169
+K+ P++ +++I EH C +C + D T+ CLH FC C ++L+ S+
Sbjct: 21 YKMDPLRNEEVVKVKIKELNEHIVCYLCAGYFIDATTITECLHTFCKSCIVKYLQTSK-- 78
Query: 170 RSTVLCPHC 178
CP C
Sbjct: 79 ----YCPLC 83
>sp|Q5NCC9|TRI58_MOUSE Tripartite motif-containing protein 58 OS=Mus musculus GN=Trim58
PE=2 SV=1
Length = 485
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRA 180
E A+C +CL+ + ++V C H+FC C SE+ +S + CP CR
Sbjct: 11 EEARCSVCLDFLQEPISVD-CGHSFCLRCISEFCEKSDSAQGVYACPQCRG 60
>sp|Q4QR06|PCGF1_XENLA Polycomb group RING finger protein 1 OS=Xenopus laevis GN=pcgf1
PE=2 SV=2
Length = 259
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 110 FKVVPVQESSNQQLEISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEK 169
+K+ P++ +++I EH C +C + D T+ CLH FC C ++L+ S+
Sbjct: 21 YKMDPLRNEEVVKVKIKELNEHIVCYLCAGYFIDATTITECLHTFCKSCIVKYLQTSK-- 78
Query: 170 RSTVLCPHC 178
CP C
Sbjct: 79 ----YCPLC 83
>sp|Q09268|YQDA_CAEEL Uncharacterized RING finger protein C32D5.10 OS=Caenorhabditis
elegans GN=C32D5.10 PE=4 SV=2
Length = 610
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 134 CCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGR 187
C +C N D +++ C H FC C WL K S CP C+ V F+ R
Sbjct: 41 CSVCKNEIIDTTSLSDCCHEFCYDCIVGWL----TKGSGPFCPMCKTPVSFIQR 90
>sp|Q3KNV8|PCGF3_HUMAN Polycomb group RING finger protein 3 OS=Homo sapiens GN=PCGF3 PE=1
SV=1
Length = 242
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 131 HAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVV------QF 184
H C +C D TV CLH FC C ++L E+ +T CP CR V+ Q+
Sbjct: 14 HITCRLCSGYLIDATTVTECLHTFCRSCLVKYL----EENNT--CPTCRIVIHQSHPLQY 67
Query: 185 VGRNHYLHNI 194
+G + + +I
Sbjct: 68 IGHDRTMQDI 77
>sp|Q2HJ46|RNF8_BOVIN E3 ubiquitin-protein ligase RNF8 OS=Bos taurus GN=RNF8 PE=2 SV=1
Length = 487
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 133 KCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLH 192
+C IC + + VT+ C H+FC+ C +EW++R V CP CR ++ R+ L
Sbjct: 404 QCIICSEYFVEAVTLN-CAHSFCSYCINEWMKRK------VECPICRKDIKSKTRSLVLD 456
Query: 193 N 193
N
Sbjct: 457 N 457
>sp|Q9UPQ4|TRI35_HUMAN Tripartite motif-containing protein 35 OS=Homo sapiens GN=TRIM35
PE=1 SV=2
Length = 493
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 14/93 (15%)
Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHC--RAVVQFVGR 187
E C +C + + D VT+ C HNFC GC S R E + + CP C RA +
Sbjct: 17 EELLCAVCYDPFRDAVTLR-CGHNFCRGCVS----RCWEVQVSPTCPVCKDRASPADLRT 71
Query: 188 NHYLHNIEQSILQAHSSLRRSDEEVALLDSYAY 220
NH L+N+ + +L R + E A SY +
Sbjct: 72 NHTLNNLVEKLL-------REEAEGARWTSYRF 97
>sp|Q5RBG2|TRI35_PONAB Tripartite motif-containing protein 35 OS=Pongo abelii GN=TRIM35
PE=2 SV=1
Length = 492
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 14/93 (15%)
Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHC--RAVVQFVGR 187
E C +C + + D VT+ C HNFC GC S R E + + CP C RA +
Sbjct: 17 EELLCAVCYDPFRDAVTLR-CGHNFCRGCVS----RCWEVQVSPTCPVCKDRASPADLRT 71
Query: 188 NHYLHNIEQSILQAHSSLRRSDEEVALLDSYAY 220
NH L+N+ + +L R + E A SY +
Sbjct: 72 NHTLNNLVEKLL-------REEAEGARWTSYRF 97
>sp|Q2KJ29|PCGF3_BOVIN Polycomb group RING finger protein 3 OS=Bos taurus GN=PCGF3 PE=2
SV=1
Length = 242
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 131 HAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVV------QF 184
H C +C D TV CLH FC C ++L E+ +T CP CR V+ Q+
Sbjct: 14 HITCRLCSGYLIDATTVTECLHTFCRSCLVKYL----EENNT--CPTCRIVIHQSHPLQY 67
Query: 185 VGRNHYLHNI 194
+G + + +I
Sbjct: 68 IGHDRTMQDI 77
>sp|Q0IIM1|RN168_BOVIN E3 ubiquitin-protein ligase RNF168 OS=Bos taurus GN=RNF168 PE=2
SV=2
Length = 573
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 133 KCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVV----QFVGRN 188
+C IC+ I + VT+ PC H C CF + +++++ CP CR V ++ R
Sbjct: 15 QCQICVEILFEPVTL-PCNHTLCKPCFESTV-----EKASLCCPFCRRRVSSWARYRSRT 68
Query: 189 HYLHNIEQ-SILQAHS----SLRRSDEEVA-LLDSYAYIKSNLVIRNGKKHR 234
+ L N+E I+Q H LR S +E ++D Y ++ L+ + G+ R
Sbjct: 69 NSLVNMELWEIIQKHYPKECKLRASGQESKEIVDDYQPVR--LLSKPGELRR 118
>sp|P84445|ICP0_EHV1V E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
V592) GN=ICP0 PE=3 SV=1
Length = 532
Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Query: 133 KCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLH 192
+C ICL + PCLH FC C + W+R++ CP C+ V+ V +H
Sbjct: 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP------TCPLCKVPVESV-----VH 55
Query: 193 NIE 195
IE
Sbjct: 56 TIE 58
>sp|P28990|ICP0_EHV1B E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
Ab4p) GN=63 PE=1 SV=1
Length = 532
Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Query: 133 KCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLH 192
+C ICL + PCLH FC C + W+R++ CP C+ V+ V +H
Sbjct: 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP------TCPLCKVPVESV-----VH 55
Query: 193 NIE 195
IE
Sbjct: 56 TIE 58
>sp|Q6J1I7|RN166_RAT RING finger protein 166 OS=Rattus norvegicus GN=Rnf166 PE=2 SV=1
Length = 237
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 16/133 (12%)
Query: 134 CCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHN 193
C ICL ++H V + C H FC C L + + LCP CR + H
Sbjct: 33 CPICLEVYHRPVAIGSCGHTFCGECLQPCL-----QVPSPLCPLCRLPFDPKKVDKATH- 86
Query: 194 IEQSILQAHSSLRRSDEEVALLDSYAYIKSNLVIRNGKKHRRKRAHSPIDEESDSIE--- 250
+E+ + + R +++V L A+I S L ++ + K P+ S I
Sbjct: 87 VEKQLSSYKAPCRGCNKKVTLAKMRAHISSCLKVQEQMANCPKFV--PVVPTSQPIPSNI 144
Query: 251 -----LPCPQCGT 258
CP CG
Sbjct: 145 PNRSTFACPYCGA 157
>sp|Q3U9F6|RN166_MOUSE RING finger protein 166 OS=Mus musculus GN=Rnf166 PE=2 SV=1
Length = 237
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 16/133 (12%)
Query: 134 CCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHN 193
C ICL ++H V + C H FC C L + + LCP CR + H
Sbjct: 33 CPICLEVYHRPVAIGSCGHTFCGECLQPCL-----QVPSPLCPLCRLPFDPKKVDKATH- 86
Query: 194 IEQSILQAHSSLRRSDEEVALLDSYAYIKSNLVIRNGKKHRRKRAHSPIDEESDSIE--- 250
+E+ + + R +++V L A+I S L ++ + K P+ S I
Sbjct: 87 VEKQLSSYKAPCRGCNKKVTLAKMRAHISSCLKVQEQMANCPKFV--PVVPTSQPIPSNI 144
Query: 251 -----LPCPQCGT 258
CP CG
Sbjct: 145 PNRSTFACPYCGA 157
>sp|Q80V85|TRI62_MOUSE Tripartite motif-containing protein 62 OS=Mus musculus GN=Trim62
PE=2 SV=1
Length = 475
Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 134 CCICLNIWHDVVTVAPCLHNFCNGCFSE-WLRRSQEKRSTVLCPHCR 179
C ICL+I+ D V++ C H FC C +E W+R QE + CP CR
Sbjct: 11 CSICLSIYQDPVSLG-CEHYFCRRCITEHWVR--QEAQGARDCPECR 54
>sp|Q9BVG3|TRI62_HUMAN Tripartite motif-containing protein 62 OS=Homo sapiens GN=TRIM62
PE=2 SV=1
Length = 475
Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 134 CCICLNIWHDVVTVAPCLHNFCNGCFSE-WLRRSQEKRSTVLCPHCR 179
C ICL+I+ D V++ C H FC C +E W+R QE + CP CR
Sbjct: 11 CSICLSIYQDPVSLG-CEHYFCRRCITEHWVR--QEAQGARDCPECR 54
>sp|Q07G17|PCGF3_XENTR Polycomb group RING finger protein 3 OS=Xenopus tropicalis GN=pcgf3
PE=2 SV=1
Length = 242
Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 131 HAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVV------QF 184
H C +C D TV CLH FC C ++L E+ +T CP CR V+ Q+
Sbjct: 14 HITCRLCNGYLIDATTVTECLHTFCRSCLVKYL----EENNT--CPTCRIVIHQSHPLQY 67
Query: 185 VGRNHYLHNI 194
+G + + +I
Sbjct: 68 IGHDRTMQDI 77
>sp|Q80XJ2|RN168_MOUSE E3 ubiquitin-protein ligase RNF168 OS=Mus musculus GN=Rnf168 PE=2
SV=3
Length = 565
Score = 40.0 bits (92), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 133 KCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLH 192
+C IC+ I + VT+ PC H CN CF +S +++ + CP CR V R H
Sbjct: 15 QCGICMEILLEPVTL-PCNHTLCNPCF-----QSTVEKANLCCPFCRRRVSSWTRYHTRR 68
Query: 193 N 193
N
Sbjct: 69 N 69
>sp|Q8C006|TRI35_MOUSE Tripartite motif-containing protein 35 OS=Mus musculus GN=Trim35
PE=2 SV=2
Length = 501
Score = 39.7 bits (91), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSE-WLRRSQEKRSTVLCPHC--RAVVQFVG 186
E C +C + + D VT+ C HNFC C S W E ++T CP C RAV +
Sbjct: 17 EELLCAVCYDPFRDAVTLR-CGHNFCRRCVSGCW-----EVQTTPSCPVCKERAVPGELR 70
Query: 187 RNHYLHNIEQSILQ 200
NH L+N+ +++L+
Sbjct: 71 TNHTLNNLVETLLR 84
>sp|Q5RKG6|TRI35_RAT Tripartite motif-containing protein 35 OS=Rattus norvegicus
GN=Trim35 PE=2 SV=1
Length = 501
Score = 39.7 bits (91), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSE-WLRRSQEKRSTVLCPHC--RAVVQFVG 186
E C +C + + D VT+ C HNFC C S W E ++T CP C RAV +
Sbjct: 17 EELLCAVCYDPFRDAVTLR-CGHNFCRRCVSGCW-----EVQTTPSCPVCKERAVPGELR 70
Query: 187 RNHYLHNIEQSILQ 200
NH L+N+ +++L+
Sbjct: 71 TNHTLNNLVETLLR 84
>sp|B2RYR0|RN168_RAT E3 ubiquitin-protein ligase RNF168 OS=Rattus norvegicus GN=Rnf168
PE=2 SV=1
Length = 564
Score = 39.7 bits (91), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 133 KCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLH 192
+C IC+ I + VT+ PC H CN CF +S +++ + CP CR V R H
Sbjct: 15 QCGICMEILVEPVTL-PCNHTLCNPCF-----QSTVEKANLCCPFCRRRVSSWTRYHTRR 68
Query: 193 N 193
N
Sbjct: 69 N 69
>sp|Q99PQ1|TR12A_MOUSE Tripartite motif-containing protein 12A OS=Mus musculus GN=Trim12a
PE=2 SV=1
Length = 284
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184
E C +CLN+ V+ A C H FC GC + + + + +CP CR QF
Sbjct: 11 EEVTCPVCLNLMVKPVS-ADCGHTFCQGCITLYFESIKCDKKVFICPVCRISYQF 64
>sp|Q4KLN8|RNF8_RAT E3 ubiquitin-protein ligase RNF8 OS=Rattus norvegicus GN=Rnf8 PE=2
SV=1
Length = 487
Score = 39.7 bits (91), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 133 KCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLH 192
+C IC + + VT+ C H+FC+ C SEW++R V CP CR ++ + L
Sbjct: 404 QCIICSEYFIEAVTLN-CAHSFCSFCISEWMKRK------VECPICRKDIESRTNSLVLD 456
Query: 193 N 193
N
Sbjct: 457 N 457
>sp|Q8IYW5|RN168_HUMAN E3 ubiquitin-protein ligase RNF168 OS=Homo sapiens GN=RNF168 PE=1
SV=1
Length = 571
Score = 39.7 bits (91), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 18/112 (16%)
Query: 133 KCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVV----QFVGRN 188
+C IC+ I + VT+ PC H C CF +S +++++ CP CR V ++ R
Sbjct: 15 QCGICMEILVEPVTL-PCNHTLCKPCF-----QSTVEKASLCCPFCRRRVSSWTRYHTRR 68
Query: 189 HYLHNIEQ-SILQAHS----SLRRSDEEV-ALLDSYAYIKSNLVIRNGKKHR 234
+ L N+E +I+Q H LR S +E + D Y ++ L+ + G+ R
Sbjct: 69 NSLVNVELWTIIQKHYPRECKLRASGQESEEVADDYQPVR--LLSKPGELRR 118
>sp|Q753V5|RAD5_ASHGO DNA repair protein RAD5 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=RAD5 PE=3 SV=2
Length = 1085
Score = 39.3 bits (90), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 145 VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIE--QSILQ-- 200
V C H FC C E+++ +K S +CP+CRA V+ + YL +E L+
Sbjct: 846 VVFTRCGHPFCESCLLEYIQFQNKKGSETICPNCRAAVE----SRYLLKLEDINGKLEPV 901
Query: 201 AHSSLRRSDEEVALL 215
+S+ ++S + VAL+
Sbjct: 902 PYSNTKKSSKIVALI 916
>sp|Q32L15|RN141_BOVIN RING finger protein 141 OS=Bos taurus GN=RNF141 PE=2 SV=1
Length = 230
Score = 39.3 bits (90), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
Query: 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNH 189
+ +CCIC++ D++ PC H+FC C +W R + CP CR +Q G N
Sbjct: 151 DEEECCICMDGRADLIL--PCAHSFCQKCIDKWSDRHRN------CPICR--LQMTGANE 200
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.132 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,124,610
Number of Sequences: 539616
Number of extensions: 5078436
Number of successful extensions: 13311
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 385
Number of HSP's that attempted gapping in prelim test: 13065
Number of HSP's gapped (non-prelim): 575
length of query: 340
length of database: 191,569,459
effective HSP length: 118
effective length of query: 222
effective length of database: 127,894,771
effective search space: 28392639162
effective search space used: 28392639162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)