Query 019461
Match_columns 340
No_of_seqs 375 out of 2333
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 09:39:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00498 FHA: FHA domain; Int 99.4 2.1E-13 4.5E-18 100.4 6.9 62 37-99 1-68 (68)
2 PF15227 zf-C3HC4_4: zinc fing 99.3 7.4E-13 1.6E-17 88.2 2.9 42 134-178 1-42 (42)
3 cd00060 FHA Forkhead associate 99.1 2.9E-10 6.4E-15 89.4 9.8 83 17-100 1-93 (102)
4 smart00504 Ubox Modified RING 99.1 7.8E-11 1.7E-15 85.3 4.5 60 131-197 1-62 (63)
5 PF04564 U-box: U-box domain; 99.1 1.6E-10 3.4E-15 86.5 5.0 68 130-203 3-72 (73)
6 TIGR00599 rad18 DNA repair pro 99.1 1.1E-10 2.3E-15 113.3 5.0 72 126-204 21-94 (397)
7 KOG4367 Predicted Zn-finger pr 99.1 5E-11 1.1E-15 113.6 2.3 35 128-163 1-35 (699)
8 TIGR03354 VI_FHA type VI secre 99.1 2.6E-10 5.6E-15 111.7 7.4 73 27-101 16-97 (396)
9 PF13923 zf-C3HC4_2: Zinc fing 99.0 3.6E-10 7.9E-15 74.0 3.1 39 134-178 1-39 (39)
10 PLN03208 E3 ubiquitin-protein 99.0 5.2E-10 1.1E-14 97.7 4.4 55 129-184 16-80 (193)
11 KOG0287 Postreplication repair 98.9 3.9E-10 8.5E-15 104.6 1.9 69 127-202 19-89 (442)
12 PF14835 zf-RING_6: zf-RING of 98.9 3.2E-10 6.9E-15 80.9 0.7 60 128-195 4-65 (65)
13 PLN02927 antheraxanthin epoxid 98.9 3.7E-09 8E-14 109.5 8.5 84 16-102 533-638 (668)
14 COG1716 FOG: FHA domain [Signa 98.9 4.3E-09 9.2E-14 92.8 7.0 65 35-103 89-159 (191)
15 PF13920 zf-C3HC4_3: Zinc fing 98.9 1.5E-09 3.3E-14 75.0 3.0 47 130-183 1-48 (50)
16 PF00097 zf-C3HC4: Zinc finger 98.9 2.3E-09 5E-14 70.8 3.7 41 134-178 1-41 (41)
17 KOG2177 Predicted E3 ubiquitin 98.8 3.4E-09 7.4E-14 98.6 5.4 71 125-202 7-77 (386)
18 PF13639 zf-RING_2: Ring finge 98.8 2E-09 4.4E-14 72.3 2.4 40 133-179 2-44 (44)
19 PF13445 zf-RING_UBOX: RING-ty 98.7 6.1E-09 1.3E-13 69.4 2.5 39 134-176 1-43 (43)
20 PHA02929 N1R/p28-like protein; 98.7 5.2E-09 1.1E-13 95.1 2.3 56 129-190 172-234 (238)
21 COG3456 Predicted component of 98.7 1.4E-08 3E-13 97.6 5.2 72 29-102 20-99 (430)
22 cd00162 RING RING-finger (Real 98.7 1.8E-08 3.8E-13 67.0 3.5 44 133-181 1-44 (45)
23 PHA02926 zinc finger-like prot 98.7 1.3E-08 2.8E-13 90.0 3.4 64 127-190 166-237 (242)
24 smart00240 FHA Forkhead associ 98.6 4.4E-08 9.6E-13 67.7 4.7 45 37-82 1-52 (52)
25 KOG0615 Serine/threonine prote 98.6 2.2E-08 4.8E-13 96.2 3.3 88 16-103 45-150 (475)
26 KOG0823 Predicted E3 ubiquitin 98.6 2.5E-08 5.4E-13 88.8 3.3 53 128-184 44-96 (230)
27 KOG0317 Predicted E3 ubiquitin 98.6 2.4E-08 5.3E-13 91.4 2.7 53 125-184 233-285 (293)
28 COG5432 RAD18 RING-finger-cont 98.6 2.6E-08 5.6E-13 90.9 2.8 68 128-202 22-91 (391)
29 KOG0320 Predicted E3 ubiquitin 98.4 9.7E-08 2.1E-12 81.6 2.7 48 130-184 130-179 (187)
30 smart00184 RING Ring finger. E 98.4 1.9E-07 4.1E-12 59.7 3.3 39 134-178 1-39 (39)
31 PF14634 zf-RING_5: zinc-RING 98.4 1.5E-07 3.2E-12 63.2 2.7 42 133-180 1-44 (44)
32 KOG2660 Locus-specific chromos 98.4 1.3E-07 2.9E-12 88.1 2.2 70 124-199 8-83 (331)
33 KOG1882 Transcriptional regula 98.4 3.7E-07 7.9E-12 81.6 4.7 92 15-106 169-283 (293)
34 PF12678 zf-rbx1: RING-H2 zinc 98.3 5E-07 1.1E-11 67.5 3.5 41 133-179 21-73 (73)
35 KOG0311 Predicted E3 ubiquitin 98.1 4.3E-07 9.4E-12 85.3 -0.4 66 129-199 41-109 (381)
36 COG5574 PEX10 RING-finger-cont 98.0 3.2E-06 7E-11 76.7 2.5 50 129-184 213-263 (271)
37 TIGR00570 cdk7 CDK-activating 98.0 9.4E-06 2E-10 76.2 5.4 50 130-184 2-55 (309)
38 KOG2164 Predicted E3 ubiquitin 98.0 3.8E-06 8.3E-11 82.6 2.9 52 131-184 186-237 (513)
39 KOG4159 Predicted E3 ubiquitin 97.8 1.2E-05 2.5E-10 78.5 2.9 65 129-200 82-153 (398)
40 KOG4628 Predicted E3 ubiquitin 97.7 1.5E-05 3.4E-10 75.9 2.6 48 132-184 230-279 (348)
41 KOG0802 E3 ubiquitin ligase [P 97.7 1.5E-05 3.3E-10 81.6 2.4 50 127-183 287-341 (543)
42 COG5243 HRD1 HRD ubiquitin lig 97.7 2.5E-05 5.3E-10 74.0 3.2 50 128-184 284-346 (491)
43 COG5222 Uncharacterized conser 97.6 4.5E-05 9.9E-10 70.2 3.8 64 132-200 275-341 (427)
44 COG5152 Uncharacterized conser 97.5 4.1E-05 9E-10 66.6 2.0 47 131-184 196-242 (259)
45 PF11789 zf-Nse: Zinc-finger o 97.5 6E-05 1.3E-09 53.4 2.1 45 129-177 9-53 (57)
46 COG5540 RING-finger-containing 97.5 7.3E-05 1.6E-09 69.1 2.9 48 131-183 323-372 (374)
47 PF12861 zf-Apc11: Anaphase-pr 97.5 0.00011 2.5E-09 55.9 3.5 50 131-183 21-82 (85)
48 KOG0978 E3 ubiquitin ligase in 97.4 6.5E-05 1.4E-09 77.4 1.2 50 129-184 641-690 (698)
49 KOG0824 Predicted E3 ubiquitin 97.2 0.00013 2.7E-09 67.6 1.4 47 132-184 8-54 (324)
50 KOG1813 Predicted E3 ubiquitin 97.2 0.00016 3.5E-09 66.8 2.1 47 131-184 241-287 (313)
51 KOG0804 Cytoplasmic Zn-finger 97.2 0.00011 2.5E-09 71.2 0.7 46 128-181 172-220 (493)
52 KOG1881 Anion exchanger adapto 97.2 0.00027 5.9E-09 72.3 3.3 74 36-112 178-266 (793)
53 KOG2879 Predicted E3 ubiquitin 97.2 0.00033 7.1E-09 64.1 3.4 57 124-184 232-288 (298)
54 KOG0297 TNF receptor-associate 97.1 0.00026 5.7E-09 69.6 3.0 51 128-184 18-68 (391)
55 KOG0825 PHD Zn-finger protein 97.0 0.00023 5E-09 73.1 1.0 50 129-184 121-172 (1134)
56 KOG1039 Predicted E3 ubiquitin 96.7 0.00081 1.8E-08 64.5 2.4 56 129-184 159-222 (344)
57 KOG0245 Kinesin-like protein [ 96.7 0.003 6.4E-08 67.2 6.6 83 16-100 453-548 (1221)
58 KOG2293 Daxx-interacting prote 96.6 0.0029 6.2E-08 62.9 5.2 92 16-113 429-532 (547)
59 KOG1880 Nuclear inhibitor of p 96.6 0.0012 2.5E-08 61.3 2.1 70 31-100 34-110 (337)
60 KOG1814 Predicted E3 ubiquitin 96.5 0.0043 9.3E-08 60.0 5.6 65 130-196 183-251 (445)
61 TIGR01663 PNK-3'Pase polynucle 96.5 0.009 1.9E-07 60.9 8.0 88 17-104 14-104 (526)
62 PF11793 FANCL_C: FANCL C-term 96.4 0.0016 3.5E-08 48.1 1.6 53 131-183 2-66 (70)
63 KOG1002 Nucleotide excision re 96.2 0.0022 4.9E-08 63.5 1.8 55 128-184 533-587 (791)
64 KOG4185 Predicted E3 ubiquitin 95.9 0.0072 1.6E-07 57.1 3.8 62 131-198 3-77 (296)
65 KOG4265 Predicted E3 ubiquitin 95.9 0.0063 1.4E-07 57.9 3.1 49 129-184 288-337 (349)
66 KOG1785 Tyrosine kinase negati 95.6 0.0046 1E-07 59.4 1.0 49 131-184 369-417 (563)
67 KOG1812 Predicted E3 ubiquitin 95.5 0.025 5.4E-07 55.6 5.7 48 130-178 145-196 (384)
68 KOG4172 Predicted E3 ubiquitin 95.4 0.004 8.6E-08 43.1 -0.0 47 132-184 8-55 (62)
69 smart00744 RINGv The RING-vari 95.3 0.017 3.7E-07 39.6 2.9 42 133-179 1-49 (49)
70 KOG1645 RING-finger-containing 95.3 0.015 3.3E-07 56.2 3.2 50 130-184 3-57 (463)
71 KOG0828 Predicted E3 ubiquitin 95.1 0.011 2.4E-07 58.3 1.8 50 129-183 569-634 (636)
72 KOG1734 Predicted RING-contain 94.5 0.01 2.2E-07 54.4 0.0 50 130-184 223-282 (328)
73 COG5219 Uncharacterized conser 94.3 0.016 3.6E-07 61.2 0.9 50 130-183 1468-1523(1525)
74 KOG1493 Anaphase-promoting com 94.1 0.011 2.3E-07 43.8 -0.6 48 133-183 22-81 (84)
75 COG5194 APC11 Component of SCF 94.0 0.035 7.5E-07 41.5 1.8 30 149-184 53-82 (88)
76 KOG1892 Actin filament-binding 93.7 0.1 2.2E-06 55.6 5.3 100 5-112 344-455 (1629)
77 KOG4692 Predicted E3 ubiquitin 93.4 0.046 1E-06 51.9 2.1 51 127-184 418-468 (489)
78 PF07800 DUF1644: Protein of u 93.2 0.14 3.1E-06 43.5 4.6 56 130-185 1-93 (162)
79 KOG4739 Uncharacterized protei 93.0 0.034 7.5E-07 50.4 0.6 47 131-185 3-50 (233)
80 KOG4275 Predicted E3 ubiquitin 92.7 0.02 4.4E-07 53.0 -1.3 44 130-184 299-343 (350)
81 PF14570 zf-RING_4: RING/Ubox 92.5 0.079 1.7E-06 36.0 1.7 44 134-182 1-47 (48)
82 KOG3800 Predicted E3 ubiquitin 92.5 0.2 4.3E-06 46.6 4.8 47 133-184 2-52 (300)
83 KOG0827 Predicted E3 ubiquitin 92.5 0.072 1.6E-06 51.3 2.0 49 132-183 5-56 (465)
84 PF05290 Baculo_IE-1: Baculovi 92.3 0.15 3.2E-06 42.1 3.2 57 125-184 74-133 (140)
85 KOG2930 SCF ubiquitin ligase, 92.1 0.095 2.1E-06 41.2 1.9 27 149-181 80-106 (114)
86 KOG1941 Acetylcholine receptor 92.1 0.055 1.2E-06 52.1 0.6 51 129-183 363-416 (518)
87 KOG3002 Zn finger protein [Gen 91.8 0.13 2.7E-06 48.8 2.7 62 127-198 44-105 (299)
88 KOG1571 Predicted E3 ubiquitin 91.6 0.079 1.7E-06 50.7 1.2 46 129-184 303-348 (355)
89 PF14447 Prok-RING_4: Prokaryo 91.3 0.1 2.2E-06 36.4 1.1 45 130-183 6-50 (55)
90 COG5236 Uncharacterized conser 91.1 0.2 4.3E-06 47.7 3.2 56 124-184 54-109 (493)
91 KOG3039 Uncharacterized conser 90.6 0.24 5.2E-06 45.0 3.2 49 130-184 220-271 (303)
92 COG5175 MOT2 Transcriptional r 89.8 0.27 5.9E-06 46.6 3.0 52 126-184 10-65 (480)
93 KOG1001 Helicase-like transcri 89.5 0.14 3E-06 53.9 0.9 47 132-184 455-501 (674)
94 KOG4362 Transcriptional regula 89.3 0.11 2.3E-06 54.0 -0.1 71 125-199 15-87 (684)
95 TIGR02500 type_III_yscD type I 89.1 1.1 2.4E-05 44.4 7.0 57 27-86 12-76 (410)
96 KOG3161 Predicted E3 ubiquitin 89.0 0.19 4E-06 51.5 1.3 38 127-165 7-48 (861)
97 PF04641 Rtf2: Rtf2 RING-finge 88.7 0.73 1.6E-05 42.8 5.0 50 128-184 110-162 (260)
98 PF02891 zf-MIZ: MIZ/SP-RING z 87.1 0.58 1.3E-05 32.1 2.5 48 131-180 2-49 (50)
99 KOG1428 Inhibitor of type V ad 86.6 0.51 1.1E-05 52.6 2.9 55 130-184 3485-3545(3738)
100 PHA03096 p28-like protein; Pro 85.5 0.98 2.1E-05 42.5 3.9 51 132-182 179-236 (284)
101 KOG2114 Vacuolar assembly/sort 83.5 0.99 2.1E-05 47.8 3.3 42 131-181 840-881 (933)
102 KOG3970 Predicted E3 ubiquitin 82.6 2.5 5.4E-05 38.1 5.0 54 130-184 49-106 (299)
103 KOG0826 Predicted E3 ubiquitin 82.3 0.83 1.8E-05 43.3 2.0 47 130-182 299-345 (357)
104 PF10367 Vps39_2: Vacuolar sor 82.3 0.54 1.2E-05 36.9 0.7 32 129-160 76-108 (109)
105 KOG2817 Predicted E3 ubiquitin 81.5 1.1 2.4E-05 43.5 2.6 48 130-181 333-383 (394)
106 PF12773 DZR: Double zinc ribb 81.2 1.7 3.6E-05 29.4 2.7 18 274-295 32-49 (50)
107 KOG3842 Adaptor protein Pellin 81.0 1.2 2.5E-05 42.1 2.4 51 130-183 289-352 (429)
108 PRK14714 DNA polymerase II lar 80.1 1.6 3.5E-05 48.4 3.5 49 251-300 668-720 (1337)
109 COG5220 TFB3 Cdk activating ki 78.8 0.92 2E-05 41.2 1.0 49 130-183 9-64 (314)
110 KOG1952 Transcription factor N 77.2 2.6 5.6E-05 44.8 3.8 61 123-183 183-247 (950)
111 PF08746 zf-RING-like: RING-li 77.0 2.2 4.8E-05 28.2 2.2 41 134-178 1-43 (43)
112 KOG0298 DEAD box-containing he 77.0 1.4 3.1E-05 48.8 1.9 51 129-185 1151-1201(1394)
113 PRK14559 putative protein seri 76.2 2.5 5.5E-05 44.4 3.5 47 252-302 3-54 (645)
114 KOG0241 Kinesin-like protein [ 76.1 4 8.7E-05 44.1 4.8 64 34-100 466-534 (1714)
115 PF00643 zf-B_box: B-box zinc 76.1 0.7 1.5E-05 30.0 -0.4 19 288-306 14-32 (42)
116 KOG1940 Zn-finger protein [Gen 74.6 1.8 3.9E-05 40.5 1.7 43 131-180 158-204 (276)
117 PF10272 Tmpp129: Putative tra 73.5 2.5 5.4E-05 41.1 2.5 34 150-183 311-351 (358)
118 PRK14890 putative Zn-ribbon RN 72.2 4.2 9E-05 28.8 2.7 39 252-296 9-55 (59)
119 KOG4445 Uncharacterized conser 71.9 1.5 3.2E-05 41.2 0.5 56 129-184 113-187 (368)
120 PF05883 Baculo_RING: Baculovi 71.4 2.2 4.7E-05 35.5 1.3 35 131-165 26-68 (134)
121 KOG2932 E3 ubiquitin ligase in 71.3 1.7 3.6E-05 41.0 0.7 45 131-184 90-135 (389)
122 KOG1815 Predicted E3 ubiquitin 71.1 2.9 6.4E-05 41.9 2.5 56 128-184 67-127 (444)
123 cd00021 BBOX B-Box-type zinc f 70.9 2.2 4.7E-05 26.9 1.0 18 287-304 10-27 (39)
124 cd02340 ZZ_NBR1_like Zinc fing 70.0 3.7 8E-05 27.1 1.9 29 252-280 2-32 (43)
125 PHA02825 LAP/PHD finger-like p 68.6 6.2 0.00013 33.8 3.5 50 129-184 6-60 (162)
126 KOG0825 PHD Zn-finger protein 68.4 2.7 5.9E-05 44.3 1.6 55 130-184 95-155 (1134)
127 KOG3579 Predicted E3 ubiquitin 68.1 5.2 0.00011 37.4 3.1 47 129-177 266-316 (352)
128 PF07191 zinc-ribbons_6: zinc- 67.6 0.52 1.1E-05 34.6 -2.7 43 131-185 1-43 (70)
129 KOG2034 Vacuolar sorting prote 67.1 2.9 6.2E-05 44.8 1.4 38 129-166 815-853 (911)
130 KOG2231 Predicted E3 ubiquitin 64.7 13 0.00029 38.9 5.7 51 133-184 2-53 (669)
131 PHA02862 5L protein; Provision 64.4 7.4 0.00016 32.8 3.1 46 133-184 4-54 (156)
132 KOG3039 Uncharacterized conser 64.4 6.6 0.00014 36.0 3.0 38 126-164 38-75 (303)
133 KOG2462 C2H2-type Zn-finger pr 63.5 5.4 0.00012 37.1 2.3 30 271-300 215-254 (279)
134 KOG1100 Predicted E3 ubiquitin 63.1 2.6 5.5E-05 37.9 0.2 40 134-184 161-201 (207)
135 PF12906 RINGv: RING-variant d 62.8 7.4 0.00016 26.1 2.4 40 134-178 1-47 (47)
136 PF03854 zf-P11: P-11 zinc fin 61.8 2.3 4.9E-05 28.8 -0.3 30 148-183 16-46 (50)
137 PF00643 zf-B_box: B-box zinc 61.7 2.4 5.2E-05 27.4 -0.2 29 251-280 4-32 (42)
138 PF13240 zinc_ribbon_2: zinc-r 57.9 6.8 0.00015 22.2 1.3 17 253-269 2-20 (23)
139 PF04710 Pellino: Pellino; In 57.8 4.4 9.6E-05 39.6 0.8 123 52-184 203-340 (416)
140 smart00336 BBOX B-Box-type zin 56.6 7.3 0.00016 24.8 1.5 17 288-304 14-30 (42)
141 COG5109 Uncharacterized conser 56.6 7.7 0.00017 36.8 2.1 47 130-180 335-384 (396)
142 TIGR03826 YvyF flagellar opero 56.1 12 0.00026 31.4 3.0 23 247-269 78-101 (137)
143 cd02338 ZZ_PCMF_like Zinc fing 55.9 6.9 0.00015 26.6 1.3 29 252-280 2-33 (49)
144 PF05605 zf-Di19: Drought indu 55.2 3.5 7.6E-05 28.4 -0.3 40 130-181 1-40 (54)
145 PF13248 zf-ribbon_3: zinc-rib 53.7 9.1 0.0002 22.2 1.4 20 251-270 3-24 (26)
146 cd02249 ZZ Zinc finger, ZZ typ 52.4 10 0.00022 25.3 1.6 29 252-280 2-32 (46)
147 PRK04023 DNA polymerase II lar 52.1 15 0.00033 40.2 3.7 30 249-278 625-658 (1121)
148 PF05458 Siva: Cd27 binding pr 51.6 12 0.00026 32.7 2.4 44 249-304 110-154 (175)
149 cd02344 ZZ_HERC2 Zinc finger, 51.5 12 0.00026 25.1 1.9 30 251-280 1-33 (45)
150 PF06844 DUF1244: Protein of u 51.0 9.4 0.0002 27.7 1.4 14 153-166 11-24 (68)
151 KOG3899 Uncharacterized conser 50.5 9.7 0.00021 35.7 1.7 35 150-184 325-366 (381)
152 PRK01777 hypothetical protein; 50.0 14 0.00031 28.9 2.4 30 69-100 46-75 (95)
153 cd02339 ZZ_Mind_bomb Zinc fing 49.5 13 0.00027 24.9 1.7 29 252-280 2-33 (45)
154 PF07754 DUF1610: Domain of un 49.3 12 0.00025 21.7 1.3 8 262-269 16-23 (24)
155 KOG0978 E3 ubiquitin ligase in 48.6 3.1 6.7E-05 43.7 -2.0 54 250-317 643-696 (698)
156 smart00291 ZnF_ZZ Zinc-binding 48.2 14 0.0003 24.4 1.8 30 251-280 5-36 (44)
157 KOG1701 Focal adhesion adaptor 46.7 14 0.0003 36.5 2.2 35 130-164 301-335 (468)
158 COG3813 Uncharacterized protei 45.4 17 0.00036 26.9 1.9 26 151-184 28-53 (84)
159 cd02335 ZZ_ADA2 Zinc finger, Z 44.0 17 0.00036 24.6 1.7 29 252-280 2-33 (49)
160 PF10571 UPF0547: Uncharacteri 43.6 12 0.00025 22.0 0.8 8 134-141 3-10 (26)
161 cd02345 ZZ_dah Zinc finger, ZZ 42.8 15 0.00032 24.9 1.3 29 252-280 2-33 (49)
162 cd02342 ZZ_UBA_plant Zinc fing 42.7 16 0.00034 24.2 1.4 31 252-282 2-35 (43)
163 cd02341 ZZ_ZZZ3 Zinc finger, Z 42.3 18 0.00039 24.5 1.6 29 252-280 2-35 (48)
164 COG2888 Predicted Zn-ribbon RN 42.2 13 0.00028 26.4 1.0 39 252-296 11-57 (61)
165 PF10497 zf-4CXXC_R1: Zinc-fin 41.8 28 0.00061 27.7 3.0 32 151-182 37-71 (105)
166 TIGR01687 moaD_arch MoaD famil 41.8 21 0.00045 26.9 2.1 28 74-101 57-84 (88)
167 KOG2462 C2H2-type Zn-finger pr 41.4 27 0.00058 32.6 3.1 26 274-299 190-225 (279)
168 KOG3053 Uncharacterized conser 41.1 25 0.00055 32.5 2.9 56 129-184 18-83 (293)
169 PF01479 S4: S4 domain; Inter 40.9 23 0.0005 23.3 2.0 25 71-96 24-48 (48)
170 cd01764 Urm1 Urm1-like ubuitin 40.1 21 0.00045 27.7 1.9 27 75-101 62-90 (94)
171 PF12171 zf-C2H2_jaz: Zinc-fin 39.3 16 0.00035 21.1 1.0 11 289-299 1-11 (27)
172 cd02343 ZZ_EF Zinc finger, ZZ 38.8 18 0.0004 24.6 1.2 29 252-280 2-32 (48)
173 PF07975 C1_4: TFIIH C1-like d 38.0 9 0.00019 26.4 -0.4 28 274-301 2-33 (51)
174 cd02334 ZZ_dystrophin Zinc fin 38.0 21 0.00045 24.3 1.4 29 252-280 2-33 (49)
175 PF14835 zf-RING_6: zf-RING of 37.3 31 0.00067 25.0 2.3 41 252-298 9-49 (65)
176 KOG2169 Zn-finger transcriptio 36.9 32 0.0007 36.3 3.3 69 130-200 305-375 (636)
177 PF06906 DUF1272: Protein of u 36.4 25 0.00054 24.7 1.6 25 152-184 29-53 (57)
178 KOG4185 Predicted E3 ubiquitin 35.0 11 0.00024 35.4 -0.5 44 132-181 208-265 (296)
179 cd00754 MoaD Ubiquitin domain 34.3 35 0.00077 24.8 2.4 26 74-101 51-76 (80)
180 COG5025 Transcription factor o 31.9 39 0.00085 35.3 2.9 52 48-99 126-180 (610)
181 KOG2272 Focal adhesion protein 31.7 20 0.00044 33.0 0.7 49 130-181 98-146 (332)
182 PF10083 DUF2321: Uncharacteri 31.4 35 0.00076 29.1 2.1 13 287-299 66-78 (158)
183 TIGR02988 YaaA_near_RecF S4 do 30.8 45 0.00097 23.1 2.3 27 71-98 32-58 (59)
184 smart00797 AHS2 Allophanate hy 30.3 1.3E+02 0.0027 28.4 5.8 33 76-108 58-90 (280)
185 TIGR00622 ssl1 transcription f 30.3 35 0.00076 27.5 1.8 9 291-299 57-65 (112)
186 TIGR00373 conserved hypothetic 30.0 28 0.00061 29.7 1.3 26 247-272 106-138 (158)
187 PF03833 PolC_DP2: DNA polymer 29.3 18 0.00039 38.9 0.0 32 249-280 654-689 (900)
188 PRK14873 primosome assembly pr 28.4 35 0.00075 36.2 1.9 35 264-298 385-419 (665)
189 COG3492 Uncharacterized protei 28.2 32 0.00069 26.6 1.2 16 152-167 41-56 (104)
190 KOG3002 Zn finger protein [Gen 27.7 31 0.00067 32.8 1.2 28 251-280 49-78 (299)
191 PRK06266 transcription initiat 26.8 38 0.00082 29.6 1.6 26 247-272 114-146 (178)
192 PF14353 CpXC: CpXC protein 26.1 51 0.0011 26.8 2.2 50 131-184 1-50 (128)
193 PF12874 zf-met: Zinc-finger o 25.8 26 0.00057 19.5 0.3 12 290-301 1-12 (25)
194 smart00363 S4 S4 RNA-binding d 25.6 81 0.0017 20.6 2.8 29 71-100 24-52 (60)
195 PF02626 AHS2: Allophanate hyd 25.2 46 0.001 31.1 2.0 34 75-108 57-90 (271)
196 TIGR01053 LSD1 zinc finger dom 25.0 46 0.00099 20.4 1.2 24 273-296 3-26 (31)
197 KOG4642 Chaperone-dependent E3 24.8 92 0.002 28.9 3.7 68 130-203 210-279 (284)
198 KOG3576 Ovo and related transc 24.5 22 0.00047 31.9 -0.4 29 270-299 145-183 (267)
199 PF00569 ZZ: Zinc finger, ZZ t 24.0 20 0.00044 23.8 -0.5 30 251-280 5-37 (46)
200 PF14168 YjzC: YjzC-like prote 24.0 63 0.0014 22.8 1.9 28 71-98 14-45 (57)
201 smart00451 ZnF_U1 U1-like zinc 23.6 33 0.00072 20.7 0.5 13 288-300 2-14 (35)
202 PRK06488 sulfur carrier protei 22.4 47 0.001 23.5 1.1 26 75-100 33-60 (65)
203 PF02597 ThiS: ThiS family; I 22.3 47 0.001 23.9 1.1 27 74-100 45-72 (77)
204 PRK06437 hypothetical protein; 22.2 80 0.0017 22.7 2.3 25 74-100 38-62 (67)
205 PF04438 zf-HIT: HIT zinc fing 21.8 33 0.00071 20.8 0.2 19 253-272 5-23 (30)
206 KOG0824 Predicted E3 ubiquitin 21.4 39 0.00084 32.0 0.6 54 125-184 99-152 (324)
207 PF14205 Cys_rich_KTR: Cystein 21.2 55 0.0012 22.8 1.2 11 287-297 26-36 (55)
208 cd00565 ThiS ThiaminS ubiquiti 21.0 75 0.0016 22.4 1.9 26 75-100 33-60 (65)
209 TIGR01682 moaD molybdopterin c 20.9 76 0.0016 23.4 2.0 25 75-101 52-76 (80)
210 PF06044 DRP: Dam-replacing fa 20.9 40 0.00087 30.9 0.6 19 251-269 32-60 (254)
211 PRK06944 sulfur carrier protei 20.7 75 0.0016 22.2 1.9 26 75-100 33-60 (65)
212 PF14478 DUF4430: Domain of un 20.5 70 0.0015 22.9 1.7 23 76-98 44-67 (68)
213 smart00647 IBR In Between Ring 20.4 20 0.00043 24.9 -1.2 15 149-163 45-59 (64)
214 COG5276 Uncharacterized conser 20.3 5.5E+02 0.012 24.7 7.9 69 16-86 139-216 (370)
215 PF14451 Ub-Mut7C: Mut7-C ubiq 20.2 88 0.0019 23.6 2.2 26 73-100 50-75 (81)
216 KOG3268 Predicted E3 ubiquitin 20.2 85 0.0018 27.5 2.4 56 128-184 162-229 (234)
217 KOG1812 Predicted E3 ubiquitin 20.0 47 0.001 32.7 0.9 36 130-166 305-345 (384)
No 1
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.45 E-value=2.1e-13 Score=100.39 Aligned_cols=62 Identities=24% Similarity=0.266 Sum_probs=54.6
Q ss_pred eEEec----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCCCceeeccCCCeeccC
Q 019461 37 VVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQNEEVVDIKCGTEIIPG 99 (340)
Q Consensus 37 ~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~~~~~~l~~gd~I~lg 99 (340)
++||| ++.+.+ .||+.||.|.++.+ ..|+|+|+ |+|||||||+++..+..+.|.+||+|.+|
T Consensus 1 ~~iGR~~~~di~l~~~~iSr~Ha~i~~~~~-~~~~i~d~~s~ngt~vng~~l~~~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPDCDIVLPDPSISRRHARISFDDD-GQFYIEDLGSTNGTFVNGQRLGPGEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTTSSEEETSTTSSTTSEEEEEETT-EEEEEEESSSSS-EEETTEEESSTSEEEE-TTEEEEET
T ss_pred CEEcCCCCCCEEECCHheeeeeeEEEEece-eeEEEEeCCCCCcEEECCEEcCCCCEEECCCCCEEEcC
Confidence 57999 588888 99999999999977 25999998 89999999999999999999999999876
No 2
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.33 E-value=7.4e-13 Score=88.17 Aligned_cols=42 Identities=38% Similarity=1.054 Sum_probs=32.4
Q ss_pred eccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCC
Q 019461 134 CCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHC 178 (340)
Q Consensus 134 C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~C 178 (340)
||||+++|++|++| +|||+||..||.+|++... ...+.||.|
T Consensus 1 CpiC~~~~~~Pv~l-~CGH~FC~~Cl~~~~~~~~--~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSL-PCGHSFCRSCLERLWKEPS--GSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE--SSSSEEEHHHHHHHHCCSS--SST---SSS
T ss_pred CCccchhhCCcccc-CCcCHHHHHHHHHHHHccC--CcCCCCcCC
Confidence 89999999999999 9999999999999997654 223789987
No 3
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.15 E-value=2.9e-10 Score=89.42 Aligned_cols=83 Identities=18% Similarity=0.142 Sum_probs=68.2
Q ss_pred cEEEEeCCC--CCceeEeeC-CceEEec-----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCCCc
Q 019461 17 WAKLEPSDS--RFADVDISS-NEVVICS-----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQNEE 86 (340)
Q Consensus 17 ~~~L~~~~~--~~~~~~l~~-~~~~iGr-----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~~~ 86 (340)
|+.|.++.+ ....+.|.. ..++||| ++.+.+ .||+.||.|.++.+. .+++.|. |+||+||||+++..+.
T Consensus 1 ~~~L~~~~~~~~~~~~~l~~~~~~~iGr~~~~~~i~l~~~~iS~~H~~i~~~~~~-~~~~~~~~s~~g~~vn~~~~~~~~ 79 (102)
T cd00060 1 VPRLVVLSGDASGRRYYLDPGGTYTIGRDSDNCDIVLDDPSVSRRHAVIRYDGDG-GVVLIDLGSTNGTFVNGQRVSPGE 79 (102)
T ss_pred CeEEEEecCCCceeEEEECCCCeEEECcCCCcCCEEcCCCCeeCcceEEEEcCCC-CEEEEECCCCCCeEECCEECCCCC
Confidence 456777665 456678888 8999999 356667 999999999999743 2555555 9999999999999988
Q ss_pred eeeccCCCeeccCC
Q 019461 87 VVDIKCGTEIIPGP 100 (340)
Q Consensus 87 ~~~l~~gd~I~lg~ 100 (340)
.+.|.+||.|.+|.
T Consensus 80 ~~~l~~gd~i~ig~ 93 (102)
T cd00060 80 PVRLRDGDVIRLGN 93 (102)
T ss_pred cEECCCCCEEEECC
Confidence 99999999999997
No 4
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.11 E-value=7.8e-11 Score=85.28 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=52.8
Q ss_pred CceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHH
Q 019461 131 HAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQS 197 (340)
Q Consensus 131 ~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~ 197 (340)
++.||||++++.+|+.+ +|||+||+.||.+|++.. ..||.|+..+.. +..|..+++.++.
T Consensus 1 ~~~Cpi~~~~~~~Pv~~-~~G~v~~~~~i~~~~~~~------~~cP~~~~~~~~~~l~~~~~l~~~i~~ 62 (63)
T smart00504 1 EFLCPISLEVMKDPVIL-PSGQTYERRAIEKWLLSH------GTDPVTGQPLTHEDLIPNLALKSAIQE 62 (63)
T ss_pred CcCCcCCCCcCCCCEEC-CCCCEEeHHHHHHHHHHC------CCCCCCcCCCChhhceeCHHHHHHHHh
Confidence 47899999999999998 999999999999999873 489999998855 7888888888763
No 5
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.08 E-value=1.6e-10 Score=86.54 Aligned_cols=68 Identities=18% Similarity=0.257 Sum_probs=55.8
Q ss_pred CCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhcc
Q 019461 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAHS 203 (340)
Q Consensus 130 e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~~ 203 (340)
++|.|||+.+++.+||.+ |+||+|++.+|.+|+.... ..||.++..+.. +.+|..|++.++.|++.+.
T Consensus 3 ~~f~CpIt~~lM~dPVi~-~~G~tyer~~I~~~l~~~~-----~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVIL-PSGHTYERSAIERWLEQNG-----GTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp GGGB-TTTSSB-SSEEEE-TTSEEEEHHHHHHHHCTTS-----SB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred cccCCcCcCcHhhCceeC-CcCCEEcHHHHHHHHHcCC-----CCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 579999999999999999 9999999999999998733 599999998876 8999999999999988653
No 6
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.07 E-value=1.1e-10 Score=113.27 Aligned_cols=72 Identities=28% Similarity=0.482 Sum_probs=62.4
Q ss_pred ccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhcc
Q 019461 126 SIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAHS 203 (340)
Q Consensus 126 ~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~~ 203 (340)
...+..+.|+||+++|.+|+++ +|||+||..||..|+... ..||.|+..+.. +..|..|.+||+.|....+
T Consensus 21 ~~Le~~l~C~IC~d~~~~Pvit-pCgH~FCs~CI~~~l~~~------~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R~ 93 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLT-SCSHTFCSLCIRRCLSNQ------PKCPLCRAEDQESKLRSNWLVSEIVESFKNLRP 93 (397)
T ss_pred cccccccCCCcCchhhhCccCC-CCCCchhHHHHHHHHhCC------CCCCCCCCccccccCccchHHHHHHHHHHHhhH
Confidence 3455789999999999999987 999999999999999754 379999998876 8899999999999987655
Q ss_pred c
Q 019461 204 S 204 (340)
Q Consensus 204 ~ 204 (340)
.
T Consensus 94 ~ 94 (397)
T TIGR00599 94 S 94 (397)
T ss_pred H
Confidence 3
No 7
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=99.06 E-value=5e-11 Score=113.57 Aligned_cols=35 Identities=31% Similarity=0.803 Sum_probs=32.4
Q ss_pred ccCCceeccccccccCccEeCCCCCcccHhhHHHHH
Q 019461 128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWL 163 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~ 163 (340)
|+|+|.|+||..+|++|+.| ||+|+.|..|....+
T Consensus 1 meeelkc~vc~~f~~epiil-~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 1 MEEELKCPVCGSFYREPIIL-PCSHNLCQACARNIL 35 (699)
T ss_pred CcccccCceehhhccCceEe-ecccHHHHHHHHhhc
Confidence 57899999999999999999 999999999987665
No 8
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=99.06 E-value=2.6e-10 Score=111.71 Aligned_cols=73 Identities=12% Similarity=0.155 Sum_probs=65.0
Q ss_pred CceeEeeCCceEEec----ccccCC-c--cccceEEEEEeCCCCeEEEEeccCCceEec--cEecCCCceeeccCCCeec
Q 019461 27 FADVDISSNEVVICS----EITSSS-S--DKHEWCKITRNSDLHSAKMQNKSSNAILVD--DTMVQNEEVVDIKCGTEII 97 (340)
Q Consensus 27 ~~~~~l~~~~~~iGr----~~~~~~-~--vS~~H~~i~~~~~~~~~~i~D~StNgt~vn--g~~i~~~~~~~l~~gd~I~ 97 (340)
...+.+....++||| ++.+.+ . ||+.||+|.++++ .|+|+|+|+|||||| |.++.++..+.|.+||+|.
T Consensus 16 ~~~~~f~~~~~~IGR~~~~d~~l~d~~~~VS~~Ha~I~~~~g--~~~l~DlStNGT~VN~sg~~l~~~~~~~L~~GD~I~ 93 (396)
T TIGR03354 16 AAQKTFGTNGGTIGRSEDCDWVLPDPERHVSGRHARIRYRDG--AYLLTDLSTNGVFLNGSGSPLGRGNPVRLEQGDRLR 93 (396)
T ss_pred ceEEEECCCCEEEecCCCCCEEeCCCCCCcchhhcEEEEECC--EEEEEECCCCCeEECCCCCCCCCCCceEcCCCCEEE
Confidence 346688889999999 577777 5 9999999999865 499999999999999 8999999889999999999
Q ss_pred cCCC
Q 019461 98 PGPD 101 (340)
Q Consensus 98 lg~~ 101 (340)
+|..
T Consensus 94 iG~~ 97 (396)
T TIGR03354 94 LGDY 97 (396)
T ss_pred ECCE
Confidence 9974
No 9
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.98 E-value=3.6e-10 Score=73.99 Aligned_cols=39 Identities=44% Similarity=1.096 Sum_probs=32.9
Q ss_pred eccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCC
Q 019461 134 CCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHC 178 (340)
Q Consensus 134 C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~C 178 (340)
|+||++.+.+|+++++|||+||..|+.+|++.. ..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~------~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKN------PKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCT------SB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCc------CCCcCC
Confidence 899999999996655999999999999999873 589987
No 10
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.96 E-value=5.2e-10 Score=97.70 Aligned_cols=55 Identities=35% Similarity=0.664 Sum_probs=45.4
Q ss_pred cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccC----------CCCCcCCCCCCccccc
Q 019461 129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQE----------KRSTVLCPHCRAVVQF 184 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~----------~~~~~~CP~Cr~~~~~ 184 (340)
.+++.|+||++.+.+|+++ +|||.||+.||.+|+..... .+....||.||..+..
T Consensus 16 ~~~~~CpICld~~~dPVvT-~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVVT-LCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCccCCccCCCcCCCcEEc-CCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 3679999999999999998 99999999999999864311 1235689999998865
No 11
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.91 E-value=3.9e-10 Score=104.58 Aligned_cols=69 Identities=28% Similarity=0.585 Sum_probs=60.8
Q ss_pred cccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhc
Q 019461 127 IDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAH 202 (340)
Q Consensus 127 ~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~ 202 (340)
..++.|+|.||.++|.-|+.+ ||+|+||.-||..++.... .||.|+..+.. ++.|+.|.+||+.|...+
T Consensus 19 ~lD~lLRC~IC~eyf~ip~it-pCsHtfCSlCIR~~L~~~p------~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~R 89 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNIPMIT-PCSHTFCSLCIRKFLSYKP------QCPTCCVTVTESDLRNNRILDEIVKSLNFAR 89 (442)
T ss_pred hhHHHHHHhHHHHHhcCceec-cccchHHHHHHHHHhccCC------CCCceecccchhhhhhhhHHHHHHHHHHHHH
Confidence 345679999999999999998 9999999999999998765 89999999987 899999999998875443
No 12
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.90 E-value=3.2e-10 Score=80.90 Aligned_cols=60 Identities=27% Similarity=0.633 Sum_probs=32.6
Q ss_pred ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHH
Q 019461 128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIE 195 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lv 195 (340)
.++.|.|++|.++|++||.+..|.|.||..|+.+.+. ..||+|+.+... ++.|+.|.+|+
T Consensus 4 le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--------~~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 4 LEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--------SECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--------TB-SSS--B-S-SS----HHHHHHH
T ss_pred HHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--------CCCCCcCChHHHHHHHhhhhhhccC
Confidence 3467999999999999998879999999999976332 369999988744 89999998875
No 13
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.89 E-value=3.7e-09 Score=109.54 Aligned_cols=84 Identities=14% Similarity=0.174 Sum_probs=65.7
Q ss_pred ccEEEEeCC-C--CCceeEe---eCCceEEec----c-----cccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEec
Q 019461 16 IWAKLEPSD-S--RFADVDI---SSNEVVICS----E-----ITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVD 78 (340)
Q Consensus 16 ~~~~L~~~~-~--~~~~~~l---~~~~~~iGr----~-----~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vn 78 (340)
.|- |+|.. + ....+.| .+..++||| + |.+.+ .||+.||+|.++++. ++|+|| |+||||||
T Consensus 533 ~w~-l~~~~~~~~~~~~~~l~~~~~~p~~iG~~~~~~~~~~~i~i~~~~vS~~Ha~i~~~~~~--~~~~Dl~S~nGT~v~ 609 (668)
T PLN02927 533 EWY-LIPHGDDCCVSETLCLTKDEDQPCIVGSEPDQDFPGMRIVIPSSQVSKMHARVIYKDGA--FFLMDLRSEHGTYVT 609 (668)
T ss_pred CeE-EEecCCCCcccceeeeecCCCCCeEecCCCCcCCCCceEEecCCccChhHeEEEEECCE--EEEEECCCCCccEEe
Confidence 454 55533 2 2345777 455699999 3 46777 999999999999765 999999 99999998
Q ss_pred cEe-----cCCCceeeccCCCeeccCCCC
Q 019461 79 DTM-----VQNEEVVDIKCGTEIIPGPDR 102 (340)
Q Consensus 79 g~~-----i~~~~~~~l~~gd~I~lg~~~ 102 (340)
|.. +..+....|.+||+|.+|.++
T Consensus 610 ~~~~~r~~~~p~~~~~l~~~d~I~~g~~~ 638 (668)
T PLN02927 610 DNEGRRYRATPNFPARFRSSDIIEFGSDK 638 (668)
T ss_pred CCCCceEecCCCCceEeCCCCEEEeCCCc
Confidence 777 445678999999999999954
No 14
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=98.87 E-value=4.3e-09 Score=92.79 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=57.8
Q ss_pred CceEEec----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCCCceeeccCCCeeccCCCCc
Q 019461 35 NEVVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQNEEVVDIKCGTEIIPGPDRE 103 (340)
Q Consensus 35 ~~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~~~~~~l~~gd~I~lg~~~~ 103 (340)
..++||| ++.+.+ .|||.||.|.+++.. ++++|+ |+|||||||.++.. .+.+.+||.|.++....
T Consensus 89 ~~~tigr~~~~~i~~~~~~vSR~Ha~l~~~~~~--~~~~d~~S~nGt~vn~~~v~~--~~~l~~gd~i~i~~~~~ 159 (191)
T COG1716 89 PVTTIGRDPDNDIVLDDDVVSRRHAELRREGNE--VFLEDLGSTNGTYVNGEKVRQ--RVLLQDGDVIRLGGTLA 159 (191)
T ss_pred ceEEeccCCCCCEEcCCCccccceEEEEEeCCc--eEEEECCCCcceEECCeEccC--cEEcCCCCEEEECccce
Confidence 3699999 577777 999999999999776 999999 99999999999996 57999999999998644
No 15
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.86 E-value=1.5e-09 Score=74.99 Aligned_cols=47 Identities=40% Similarity=0.892 Sum_probs=39.8
Q ss_pred CCceeccccccccCccEeCCCCCc-ccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461 130 EHAKCCICLNIWHDVVTVAPCLHN-FCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183 (340)
Q Consensus 130 e~l~C~IC~~~~~~Pv~l~pCgH~-FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 183 (340)
|+..|.||++...+++.+ ||||. ||..|+.+|++.. ..||.||+++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~------~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLL-PCGHLCFCEECAERLLKRK------KKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEE-TTCEEEEEHHHHHHHHHTT------SBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEe-CCCChHHHHHHhHHhcccC------CCCCcCChhhc
Confidence 357899999999999888 99999 9999999999854 48999999875
No 16
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.86 E-value=2.3e-09 Score=70.82 Aligned_cols=41 Identities=46% Similarity=1.173 Sum_probs=35.9
Q ss_pred eccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCC
Q 019461 134 CCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHC 178 (340)
Q Consensus 134 C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~C 178 (340)
|+||++.+.+|+.+++|||+||..|+.+|++.. ..+.||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~----~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENS----GSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHT----SSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhc----CCccCCcC
Confidence 899999999999555999999999999999853 24789987
No 17
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=3.4e-09 Score=98.60 Aligned_cols=71 Identities=30% Similarity=0.653 Sum_probs=58.0
Q ss_pred hccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccccCcchHHHHHHHHHHHhc
Q 019461 125 ISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQSILQAH 202 (340)
Q Consensus 125 ~~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~n~~l~~lve~~~~~~ 202 (340)
.....+++.|+||++.|.+|+++ +|+|+||..|+..++. . .+.||.||.....+..|..+.++++.+....
T Consensus 7 ~~~~~~~~~C~iC~~~~~~p~~l-~C~H~~c~~C~~~~~~-~-----~~~Cp~cr~~~~~~~~n~~l~~~~~~~~~~~ 77 (386)
T KOG2177|consen 7 LEVLQEELTCPICLEYFREPVLL-PCGHNFCRACLTRSWE-G-----PLSCPVCRPPSRNLRPNVLLANLVERLRQLR 77 (386)
T ss_pred hhhccccccChhhHHHhhcCccc-cccchHhHHHHHHhcC-C-----CcCCcccCCchhccCccHHHHHHHHHHHhcC
Confidence 34456899999999999999776 9999999999999887 2 3799999963334678999999988776544
No 18
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.82 E-value=2e-09 Score=72.30 Aligned_cols=40 Identities=48% Similarity=1.165 Sum_probs=33.3
Q ss_pred eecccccccc---CccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCC
Q 019461 133 KCCICLNIWH---DVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCR 179 (340)
Q Consensus 133 ~C~IC~~~~~---~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr 179 (340)
.|+||++.|. .++.+ +|+|.||.+||.+|++... .||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~~~~~~~------~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKL-PCGHVFHRSCIKEWLKRNN------SCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEE-TTSEEEEHHHHHHHHHHSS------B-TTTH
T ss_pred CCcCCChhhcCCCeEEEc-cCCCeeCHHHHHHHHHhCC------cCCccC
Confidence 6999999994 44555 9999999999999998754 999997
No 19
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.73 E-value=6.1e-09 Score=69.43 Aligned_cols=39 Identities=33% Similarity=0.928 Sum_probs=23.9
Q ss_pred eccccccccC----ccEeCCCCCcccHhhHHHHHHhccCCCCCcCCC
Q 019461 134 CCICLNIWHD----VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCP 176 (340)
Q Consensus 134 C~IC~~~~~~----Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP 176 (340)
||||++ |.+ |+.| +|||+||..|+.++++.+. ...+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L-~CGH~~c~~cl~~l~~~~~--~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVL-PCGHVFCKDCLQKLSKKSD--RNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE--SSS-EEEHHHHHHHHHH-S---S-B--T
T ss_pred CCcccc-ccCCCCCCEEE-eCccHHHHHHHHHHHhcCC--CCeeeCc
Confidence 899999 888 9998 9999999999999998652 2457887
No 20
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.71 E-value=5.2e-09 Score=95.08 Aligned_cols=56 Identities=27% Similarity=0.678 Sum_probs=44.3
Q ss_pred cCCceeccccccccCc-------cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccccCcchH
Q 019461 129 IEHAKCCICLNIWHDV-------VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHY 190 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~P-------v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~n~~ 190 (340)
.++..|+||++.+.++ ..+.+|+|.||..||.+|++... +||.||..+..+.++++
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~------tCPlCR~~~~~v~~~r~ 234 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKN------TCPVCRTPFISVIKSRF 234 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCC------CCCCCCCEeeEEeeeee
Confidence 3568999999987654 13338999999999999998653 89999999887655543
No 21
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.71 E-value=1.4e-08 Score=97.59 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=63.3
Q ss_pred eeEeeCCceEEec----ccccCC---ccccceEEEEEeCCCCeEEEEeccCCceEeccEecCCCce-eeccCCCeeccCC
Q 019461 29 DVDISSNEVVICS----EITSSS---SDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNEEV-VDIKCGTEIIPGP 100 (340)
Q Consensus 29 ~~~l~~~~~~iGr----~~~~~~---~vS~~H~~i~~~~~~~~~~i~D~StNgt~vng~~i~~~~~-~~l~~gd~I~lg~ 100 (340)
...+..+..+||| ++.++| +||+.||.|.+++++ |+|+|.|+||+||||..+..+.. ..|+.||+|.+|.
T Consensus 20 q~~f~~~~g~IGrs~dcdW~i~D~~~~VS~~Hc~I~~~dg~--f~L~DtS~g~l~VNgs~~~~g~~~~RLqqGd~i~iG~ 97 (430)
T COG3456 20 QKLFDRGGGVIGRSPDCDWQIDDPERFVSKQHCTISYRDGG--FCLTDTSNGGLLVNGSDLPLGEGSARLQQGDEILIGR 97 (430)
T ss_pred hhhhhcCCcccccCCCCCccccCcccccchhheEEEecCCe--EEEEecCCCceeecccccCCCCCccccccCCEEeecc
Confidence 3466788899999 677776 999999999998776 99999999999999999988877 8899999999997
Q ss_pred CC
Q 019461 101 DR 102 (340)
Q Consensus 101 ~~ 102 (340)
..
T Consensus 98 y~ 99 (430)
T COG3456 98 YI 99 (430)
T ss_pred EE
Confidence 43
No 22
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.68 E-value=1.8e-08 Score=66.95 Aligned_cols=44 Identities=39% Similarity=1.056 Sum_probs=38.0
Q ss_pred eeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcc
Q 019461 133 KCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAV 181 (340)
Q Consensus 133 ~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~ 181 (340)
.|+||++.+.+++.+.+|+|.||..|+.+|+.... ..||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~-----~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGK-----NTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCc-----CCCCCCCCc
Confidence 48999999988888856999999999999998632 589999875
No 23
>PHA02926 zinc finger-like protein; Provisional
Probab=98.67 E-value=1.3e-08 Score=89.99 Aligned_cols=64 Identities=23% Similarity=0.559 Sum_probs=47.6
Q ss_pred cccCCceeccccccccCc--------cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccccCcchH
Q 019461 127 IDIEHAKCCICLNIWHDV--------VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHY 190 (340)
Q Consensus 127 ~~~e~l~C~IC~~~~~~P--------v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~n~~ 190 (340)
...++..|+||++...++ -.|.+|+|+||..||..|.+...+.+....||.||..+..+.++++
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSrf 237 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSKF 237 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccccc
Confidence 345679999999986442 1344999999999999999864333345679999999887555443
No 24
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=98.64 E-value=4.4e-08 Score=67.71 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=37.9
Q ss_pred eEEec-----ccccCC-ccccceEEEEEeCCCCeEEEEecc-CCceEeccEec
Q 019461 37 VVICS-----EITSSS-SDKHEWCKITRNSDLHSAKMQNKS-SNAILVDDTMV 82 (340)
Q Consensus 37 ~~iGr-----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~S-tNgt~vng~~i 82 (340)
++||| ++.+++ .||+.||+|.++.+. .|+|.|++ +|||||||+++
T Consensus 1 ~~iGr~~~~~~i~~~~~~vs~~H~~i~~~~~~-~~~i~d~~s~~gt~vng~~v 52 (52)
T smart00240 1 VTIGRSSEDCDIQLPGPSISRRHAEIVYDGGG-RFYLIDLGSTNGTFVNGKRI 52 (52)
T ss_pred CEeCCCCCCCCEEeCCCCcchhHcEEEECCCC-eEEEEECCCCCCeeECCEEC
Confidence 36787 466777 999999999998664 69999995 99999999875
No 25
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=2.2e-08 Score=96.16 Aligned_cols=88 Identities=17% Similarity=0.184 Sum_probs=71.3
Q ss_pred ccEEEEeCCCCCceeEeeCCceEEecc----cccCC-c-------------cccceEEEEEeCCCCeEEEEeccCCceEe
Q 019461 16 IWAKLEPSDSRFADVDISSNEVVICSE----ITSSS-S-------------DKHEWCKITRNSDLHSAKMQNKSSNAILV 77 (340)
Q Consensus 16 ~~~~L~~~~~~~~~~~l~~~~~~iGr~----~~~~~-~-------------vS~~H~~i~~~~~~~~~~i~D~StNgt~v 77 (340)
+|+||+-..-...++++..+.+++||. ..+.. . +|..|+++.++...+.++++|.|+|||||
T Consensus 45 ~r~r~~~v~~~~~~~d~~nd~f~fGR~~~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~DhS~nGT~V 124 (475)
T KOG0615|consen 45 PRARLVGVRRGIKSIDLANDEFTFGRGDSCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDHSRNGTFV 124 (475)
T ss_pred chhhhcceeeccccceeccceEEecCCCcccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEecccCcccc
Confidence 599999888889999999999999992 22222 2 45555555555555679999999999999
Q ss_pred ccEecCCCceeeccCCCeeccCCCCc
Q 019461 78 DDTMVQNEEVVDIKCGTEIIPGPDRE 103 (340)
Q Consensus 78 ng~~i~~~~~~~l~~gd~I~lg~~~~ 103 (340)
|...++++....|++||+|.++....
T Consensus 125 N~e~i~k~~~r~lkN~dei~is~p~~ 150 (475)
T KOG0615|consen 125 NDEMIGKGLSRILKNGDEISISIPAL 150 (475)
T ss_pred cHhHhhccccccccCCCEEEeccchh
Confidence 99999999999999999999886543
No 26
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.5e-08 Score=88.81 Aligned_cols=53 Identities=36% Similarity=0.772 Sum_probs=46.4
Q ss_pred ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
+...+.|.||++.-++||++ .|||-||+.||-+|+.... ....||+|+..+..
T Consensus 44 ~~~~FdCNICLd~akdPVvT-lCGHLFCWpClyqWl~~~~---~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVT-LCGHLFCWPCLYQWLQTRP---NSKECPVCKAEVSI 96 (230)
T ss_pred CCCceeeeeeccccCCCEEe-ecccceehHHHHHHHhhcC---CCeeCCcccccccc
Confidence 34689999999999999999 9999999999999998653 45689999988875
No 27
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.4e-08 Score=91.39 Aligned_cols=53 Identities=36% Similarity=0.738 Sum_probs=46.0
Q ss_pred hccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 125 ISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 125 ~~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
....+....|.+|++...+|--+ ||||.||.+||.+|..... .||.||..+..
T Consensus 233 ~~i~~a~~kC~LCLe~~~~pSaT-pCGHiFCWsCI~~w~~ek~------eCPlCR~~~~p 285 (293)
T KOG0317|consen 233 SSIPEATRKCSLCLENRSNPSAT-PCGHIFCWSCILEWCSEKA------ECPLCREKFQP 285 (293)
T ss_pred ccCCCCCCceEEEecCCCCCCcC-cCcchHHHHHHHHHHcccc------CCCcccccCCC
Confidence 33455678999999999999887 9999999999999998765 69999998764
No 28
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.58 E-value=2.6e-08 Score=90.89 Aligned_cols=68 Identities=22% Similarity=0.356 Sum_probs=58.9
Q ss_pred ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhc
Q 019461 128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAH 202 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~ 202 (340)
....+.|-||.++|.-|+.+ +|||+||.-||.+++.... .||.||..... ++.+..+..+++.|....
T Consensus 22 LDs~lrC~IC~~~i~ip~~T-tCgHtFCslCIR~hL~~qp------~CP~Cr~~~~esrlr~~s~~~ei~es~~~~r 91 (391)
T COG5432 22 LDSMLRCRICDCRISIPCET-TCGHTFCSLCIRRHLGTQP------FCPVCREDPCESRLRGSSGSREINESHARNR 91 (391)
T ss_pred chhHHHhhhhhheeecceec-ccccchhHHHHHHHhcCCC------CCccccccHHhhhcccchhHHHHHHhhhhcc
Confidence 34568999999999999999 9999999999999998765 79999998876 788888888888876543
No 29
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=9.7e-08 Score=81.62 Aligned_cols=48 Identities=33% Similarity=0.796 Sum_probs=40.9
Q ss_pred CCceeccccccccC--ccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 130 EHAKCCICLNIWHD--VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 130 e~l~C~IC~~~~~~--Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
..+.||||++-+.+ |+.+ .|||.||..||.+.++... .||+|++.+..
T Consensus 130 ~~~~CPiCl~~~sek~~vsT-kCGHvFC~~Cik~alk~~~------~CP~C~kkIt~ 179 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVST-KCGHVFCSQCIKDALKNTN------KCPTCRKKITH 179 (187)
T ss_pred cccCCCceecchhhcccccc-ccchhHHHHHHHHHHHhCC------CCCCcccccch
Confidence 56899999999864 5566 9999999999999998764 89999987654
No 30
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.44 E-value=1.9e-07 Score=59.74 Aligned_cols=39 Identities=44% Similarity=1.148 Sum_probs=33.9
Q ss_pred eccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCC
Q 019461 134 CCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHC 178 (340)
Q Consensus 134 C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~C 178 (340)
|+||++...+++.+ +|+|.||..|+..|+... ...||.|
T Consensus 1 C~iC~~~~~~~~~~-~C~H~~c~~C~~~~~~~~-----~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVL-PCGHTFCRSCIRKWLKSG-----NNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEe-cCCChHHHHHHHHHHHhC-----cCCCCCC
Confidence 78999998888888 999999999999999833 2579987
No 31
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.43 E-value=1.5e-07 Score=63.23 Aligned_cols=42 Identities=31% Similarity=0.831 Sum_probs=32.7
Q ss_pred eeccccccc--cCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCc
Q 019461 133 KCCICLNIW--HDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRA 180 (340)
Q Consensus 133 ~C~IC~~~~--~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~ 180 (340)
.|+||.+.| ..+..+++|||+||..|+..+. . ....||.||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~-----~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-G-----KSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-C-----CCCCCcCCCC
Confidence 489999999 3334444999999999999887 2 2368999985
No 32
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.38 E-value=1.3e-07 Score=88.11 Aligned_cols=70 Identities=27% Similarity=0.682 Sum_probs=58.5
Q ss_pred hhccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc------cCcchHHHHHHHH
Q 019461 124 EISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF------VGRNHYLHNIEQS 197 (340)
Q Consensus 124 ~~~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~------~~~n~~l~~lve~ 197 (340)
+.......++|.+|..+|.++.++..|+|+||++||.+++.... .||.|...+.. ++....|+.|+-.
T Consensus 8 k~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~------~CP~C~i~ih~t~pl~ni~~DrtlqdiVyK 81 (331)
T KOG2660|consen 8 KLTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESK------YCPTCDIVIHKTHPLLNIRSDRTLQDIVYK 81 (331)
T ss_pred hhhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhc------cCCccceeccCccccccCCcchHHHHHHHH
Confidence 34445578999999999999999988999999999999998754 99999987765 5667888888766
Q ss_pred HH
Q 019461 198 IL 199 (340)
Q Consensus 198 ~~ 199 (340)
++
T Consensus 82 LV 83 (331)
T KOG2660|consen 82 LV 83 (331)
T ss_pred Hc
Confidence 54
No 33
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=98.38 E-value=3.7e-07 Score=81.55 Aligned_cols=92 Identities=12% Similarity=0.091 Sum_probs=66.8
Q ss_pred cccEE--EEeCCCC--CceeEe-eCCceEEecccc-----cCC-ccccceEEEEEeC------CC-----CeEEEEec-c
Q 019461 15 EIWAK--LEPSDSR--FADVDI-SSNEVVICSEIT-----SSS-SDKHEWCKITRNS------DL-----HSAKMQNK-S 71 (340)
Q Consensus 15 ~~~~~--L~~~~~~--~~~~~l-~~~~~~iGr~~~-----~~~-~vS~~H~~i~~~~------~~-----~~~~i~D~-S 71 (340)
.+|.+ |.|.... ++...| .++-+++||++. ++. +-|++||.|.+.. ++ ...||.|| |
T Consensus 169 kP~kRwrLy~fk~~e~l~~l~iHrqs~yL~gRerkIaDi~idhpScSKQHaviQyR~v~~~r~dGt~grrvkpYiiDLgS 248 (293)
T KOG1882|consen 169 KPKKRWRLYPFKCYEVLPVLYIHRQSCYLDGRERKIADIPIDHPSCSKQHAVIQYRLVEFTRADGTVGRRVKPYIIDLGS 248 (293)
T ss_pred CchhheecccccCCcccchheeeeeeeeecCceeeeeccCCCCccccccceeeeeeecccccCCCccceeeeeEEEecCC
Confidence 35554 6665442 233333 557799999544 444 7799999997652 21 24899999 9
Q ss_pred CCceEeccEecCCCceeeccCCCeeccCCCCccee
Q 019461 72 SNAILVDDTMVQNEEVVDIKCGTEIIPGPDREVYL 106 (340)
Q Consensus 72 tNgt~vng~~i~~~~~~~l~~gd~I~lg~~~~~~~ 106 (340)
+||||+|.++|....-+.|..+|+|.+|-...+++
T Consensus 249 ~NgTfLNnk~IepqRYyEL~ekDvlkfgfs~rEyv 283 (293)
T KOG1882|consen 249 GNGTFLNNKVIEPQRYYELREKDVLKFGFSSREYV 283 (293)
T ss_pred CCcceecCcccCchheeeeecCceeeeccchHHHH
Confidence 99999999999999999999999999986444443
No 34
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.31 E-value=5e-07 Score=67.53 Aligned_cols=41 Identities=39% Similarity=0.972 Sum_probs=33.1
Q ss_pred eeccccccccC------------ccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCC
Q 019461 133 KCCICLNIWHD------------VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCR 179 (340)
Q Consensus 133 ~C~IC~~~~~~------------Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr 179 (340)
.|+||++.|.+ ++.+.+|+|.|...||.+|++... +||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~------~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN------TCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS------B-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC------cCCCCC
Confidence 49999999933 345558999999999999998764 999997
No 35
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=4.3e-07 Score=85.25 Aligned_cols=66 Identities=27% Similarity=0.564 Sum_probs=53.1
Q ss_pred cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc---cCcchHHHHHHHHHH
Q 019461 129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF---VGRNHYLHNIEQSIL 199 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~---~~~n~~l~~lve~~~ 199 (340)
.-++.|+||+++++..+++..|+|.||..||...++..+ ..||.||+.+.. |+.......|+..+.
T Consensus 41 ~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn-----~ecptcRk~l~SkrsLr~Dp~fdaLis~i~ 109 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGN-----NECPTCRKKLVSKRSLRIDPNFDALISKIY 109 (381)
T ss_pred hhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcC-----CCCchHHhhccccccCCCCccHHHHHHHHh
Confidence 357899999999999999978999999999999888765 699999999876 555544445554433
No 36
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=3.2e-06 Score=76.72 Aligned_cols=50 Identities=34% Similarity=0.745 Sum_probs=42.9
Q ss_pred cCCceeccccccccCccEeCCCCCcccHhhHHH-HHHhccCCCCCcCCCCCCccccc
Q 019461 129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSE-WLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~-~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
+.+..|+||++....|..+ +|||.||..||.. |..++. -.||.||+.+..
T Consensus 213 ~~d~kC~lC~e~~~~ps~t-~CgHlFC~~Cl~~~~t~~k~-----~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCT-PCGHLFCLSCLLISWTKKKY-----EFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCcccc-cccchhhHHHHHHHHHhhcc-----ccCchhhhhccc
Confidence 5678999999999999999 9999999999998 766543 359999988754
No 37
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.98 E-value=9.4e-06 Score=76.18 Aligned_cols=50 Identities=22% Similarity=0.598 Sum_probs=38.2
Q ss_pred CCceecccccc-ccCcc---EeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 130 EHAKCCICLNI-WHDVV---TVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 130 e~l~C~IC~~~-~~~Pv---~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
++..||+|+.. +.+|- .+.+|||.||.+|+...+..+ ...||.|+..+..
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~-----~~~CP~C~~~lrk 55 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG-----SGSCPECDTPLRK 55 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCC-----CCCCCCCCCccch
Confidence 34689999984 55663 332799999999999987543 3589999987765
No 38
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=3.8e-06 Score=82.63 Aligned_cols=52 Identities=29% Similarity=0.652 Sum_probs=45.1
Q ss_pred CceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 131 HAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 131 ~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
...||||++...-|+.+ .|||.||..||..+|..+. ..+...||.|+..+..
T Consensus 186 ~~~CPICL~~~~~p~~t-~CGHiFC~~CiLqy~~~s~-~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRT-NCGHIFCGPCILQYWNYSA-IKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCccccc-ccCceeeHHHHHHHHhhhc-ccCCccCCchhhhccc
Confidence 78999999999999888 7999999999999998762 3445689999988775
No 39
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=1.2e-05 Score=78.52 Aligned_cols=65 Identities=28% Similarity=0.604 Sum_probs=52.6
Q ss_pred cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccccc------C-cchHHHHHHHHHHH
Q 019461 129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFV------G-RNHYLHNIEQSILQ 200 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~------~-~n~~l~~lve~~~~ 200 (340)
..++.|.||...|.+|+++ ||||+||..||.+.+... ..||.||..+..+ . .|+.+..++..|+.
T Consensus 82 ~sef~c~vc~~~l~~pv~t-pcghs~c~~Cl~r~ld~~------~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~ 153 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVT-PCGHSFCLECLDRSLDQE------TECPLCRDELVELPALEQALSLNRLLCKLITKFLE 153 (398)
T ss_pred cchhhhhhhHhhcCCCccc-cccccccHHHHHHHhccC------CCCcccccccccchHHHHHHHHHHHHHHHHHHhhh
Confidence 5789999999999999999 999999999999977754 4899999988752 2 25555566666654
No 40
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=1.5e-05 Score=75.89 Aligned_cols=48 Identities=31% Similarity=0.932 Sum_probs=39.9
Q ss_pred ceecccccccc--CccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 132 AKCCICLNIWH--DVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 132 l~C~IC~~~~~--~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
.+|.||+|.|. +-+..+||.|.|...||..|+.+.. ..||+|+..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r-----~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTR-----TFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcC-----ccCCCCCCcCCC
Confidence 49999999996 3444559999999999999998764 579999987664
No 41
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=1.5e-05 Score=81.60 Aligned_cols=50 Identities=36% Similarity=0.916 Sum_probs=43.3
Q ss_pred cccCCceeccccccccC-----ccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461 127 IDIEHAKCCICLNIWHD-----VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183 (340)
Q Consensus 127 ~~~e~l~C~IC~~~~~~-----Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 183 (340)
.......|+||.+.+.. |..+ +|+|.|+..|+..|++..+ +||.||..+.
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~~~~~rL-~C~Hifh~~CL~~W~er~q------tCP~CR~~~~ 341 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHNITPKRL-PCGHIFHDSCLRSWFERQQ------TCPTCRTVLY 341 (543)
T ss_pred hhhcCCeeeeechhhcccccccccee-ecccchHHHHHHHHHHHhC------cCCcchhhhh
Confidence 44567899999999998 7777 9999999999999999865 9999998443
No 42
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=2.5e-05 Score=73.98 Aligned_cols=50 Identities=36% Similarity=0.839 Sum_probs=42.1
Q ss_pred ccCCceecccccc-ccC------------ccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 128 DIEHAKCCICLNI-WHD------------VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 128 ~~e~l~C~IC~~~-~~~------------Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
..++-.|.||++. ++. |..| ||||.|...|+..|++.++ +||.||.++..
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrL-pCGHilHl~CLknW~ERqQ------TCPICr~p~if 346 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRL-PCGHILHLHCLKNWLERQQ------TCPICRRPVIF 346 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccc-cccceeeHHHHHHHHHhcc------CCCcccCcccc
Confidence 3467799999997 443 4788 9999999999999999876 99999998554
No 43
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.63 E-value=4.5e-05 Score=70.23 Aligned_cols=64 Identities=22% Similarity=0.430 Sum_probs=51.3
Q ss_pred ceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc---ccCcchHHHHHHHHHHH
Q 019461 132 AKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ---FVGRNHYLHNIEQSILQ 200 (340)
Q Consensus 132 l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~---~~~~n~~l~~lve~~~~ 200 (340)
|.|++|..++++|+.+..|+|.||..||...+-.+. +.||.|...-. .+.+......-||.+++
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsD-----f~CpnC~rkdvlld~l~pD~dk~~EvE~~lk 341 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSD-----FKCPNCSRKDVLLDGLTPDIDKKLEVEKALK 341 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhcc-----ccCCCcccccchhhccCccHHHHHHHHHHHH
Confidence 999999999999999867999999999998887665 89999976322 25666666666666665
No 44
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.53 E-value=4.1e-05 Score=66.59 Aligned_cols=47 Identities=23% Similarity=0.454 Sum_probs=41.0
Q ss_pred CceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 131 HAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 131 ~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
.+.|.||.+.|..||.+ .|||+||..|..+-++.. -.|-+|.+....
T Consensus 196 PF~C~iCKkdy~spvvt-~CGH~FC~~Cai~~y~kg------~~C~~Cgk~t~G 242 (259)
T COG5152 196 PFLCGICKKDYESPVVT-ECGHSFCSLCAIRKYQKG------DECGVCGKATYG 242 (259)
T ss_pred ceeehhchhhccchhhh-hcchhHHHHHHHHHhccC------Ccceecchhhcc
Confidence 57999999999999999 999999999998877655 389999887655
No 45
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.49 E-value=6e-05 Score=53.42 Aligned_cols=45 Identities=27% Similarity=0.510 Sum_probs=32.1
Q ss_pred cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCC
Q 019461 129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPH 177 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~ 177 (340)
.-.+.|||.+..|.+||.-..|+|+|.+..|.+++... +...||+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~----~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRN----GSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTT----S-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhc----CCCCCCC
Confidence 45689999999999999877999999999999999432 3578998
No 46
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=7.3e-05 Score=69.13 Aligned_cols=48 Identities=35% Similarity=0.881 Sum_probs=39.1
Q ss_pred Cceecccccccc--CccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461 131 HAKCCICLNIWH--DVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183 (340)
Q Consensus 131 ~l~C~IC~~~~~--~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 183 (340)
...|.||++-|. +.+..+||.|.|...|+.+|+..-. ..||+||..+.
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~-----~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYS-----NKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhc-----ccCCccCCCCC
Confidence 468999999884 4455559999999999999998433 58999998865
No 47
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.47 E-value=0.00011 Score=55.85 Aligned_cols=50 Identities=30% Similarity=0.626 Sum_probs=37.4
Q ss_pred Cceecccccccc------------CccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461 131 HAKCCICLNIWH------------DVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183 (340)
Q Consensus 131 ~l~C~IC~~~~~------------~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 183 (340)
+-.|+||...|. -|+.+-.|+|.|...||.+|+.... ....||.||++..
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~---~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQS---SKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHcccc---CCCCCCCcCCeee
Confidence 456777766663 2556658999999999999998642 2358999998754
No 48
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=6.5e-05 Score=77.40 Aligned_cols=50 Identities=34% Similarity=0.758 Sum_probs=43.7
Q ss_pred cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
...|+||+|..-+.+.+.+ .|||.||..|+.+...... ..||.|...+..
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~-kC~H~FC~~Cvq~r~etRq-----RKCP~Cn~aFga 690 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVIT-KCGHVFCEECVQTRYETRQ-----RKCPKCNAAFGA 690 (698)
T ss_pred HhceeCCCccCchhhHHHH-hcchHHHHHHHHHHHHHhc-----CCCCCCCCCCCc
Confidence 3679999999999999998 9999999999999887665 589999887653
No 49
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00013 Score=67.63 Aligned_cols=47 Identities=28% Similarity=0.644 Sum_probs=41.4
Q ss_pred ceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 132 AKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 132 l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
-.|+||+....-|+.+ +|+|.||.-||........ .+|++||.++..
T Consensus 8 ~eC~IC~nt~n~Pv~l-~C~HkFCyiCiKGsy~ndk-----~~CavCR~pids 54 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNL-YCFHKFCYICIKGSYKNDK-----KTCAVCRFPIDS 54 (324)
T ss_pred CcceeeeccCCcCccc-cccchhhhhhhcchhhcCC-----CCCceecCCCCc
Confidence 4799999999999888 9999999999998766554 579999999876
No 50
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00016 Score=66.76 Aligned_cols=47 Identities=26% Similarity=0.520 Sum_probs=40.9
Q ss_pred CceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 131 HAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 131 ~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
-+.|-||.+.|.+||++ .|+|+||..|....++... .|++|.+.+..
T Consensus 241 Pf~c~icr~~f~~pVvt-~c~h~fc~~ca~~~~qk~~------~c~vC~~~t~g 287 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVT-KCGHYFCEVCALKPYQKGE------KCYVCSQQTHG 287 (313)
T ss_pred Cccccccccccccchhh-cCCceeehhhhccccccCC------cceeccccccc
Confidence 35799999999999999 9999999999987776543 89999888766
No 51
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.18 E-value=0.00011 Score=71.22 Aligned_cols=46 Identities=28% Similarity=0.665 Sum_probs=37.6
Q ss_pred ccCCceeccccccccCcc---EeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcc
Q 019461 128 DIEHAKCCICLNIWHDVV---TVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAV 181 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~Pv---~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~ 181 (340)
..|.-+||||++.+.+-+ ....|.|+|-..|+..|+. .+||+||..
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--------~scpvcR~~ 220 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--------SSCPVCRYC 220 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhccc--------CcChhhhhh
Confidence 346789999999997654 4448999999999999986 489999753
No 52
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=97.17 E-value=0.00027 Score=72.34 Aligned_cols=74 Identities=8% Similarity=0.028 Sum_probs=58.9
Q ss_pred ceEEec----ccccCC-ccccceEEEEEeCCCCe---------EEEEec-cCCceEeccEecCCCceeeccCCCeeccCC
Q 019461 36 EVVICS----EITSSS-SDKHEWCKITRNSDLHS---------AKMQNK-SSNAILVDDTMVQNEEVVDIKCGTEIIPGP 100 (340)
Q Consensus 36 ~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~---------~~i~D~-StNgt~vng~~i~~~~~~~l~~gd~I~lg~ 100 (340)
-++||| |+.+.. .|||.||.|.+...+-. |+|.|+ ||.|||+|..++....-+....|+++.+|.
T Consensus 178 ~~~fgr~~~cD~~~eHpsISr~h~vlQy~~~~~~~p~~s~~~g~~i~dlgsThgt~~NK~rvppk~yir~~Vg~v~~fgg 257 (793)
T KOG1881|consen 178 ACLFGRLGGCDVALEHPSISRFHAVLQYKASGPDDPCASNGEGWYIYDLGSTHGTFLNKDRVPPKVYIRDRVGHVARFGG 257 (793)
T ss_pred eEEecccCCCccccccCcccccceeeeccCCCCCccccCCCCceEEeeccccccceeccccCCCcchhhhhHHHHHHhcC
Confidence 378999 666666 89999999988754333 999999 999999999999998777788888888776
Q ss_pred CCcceecccccc
Q 019461 101 DREVYLNFRFKV 112 (340)
Q Consensus 101 ~~~~~~~y~f~i 112 (340)
+...|+|+-
T Consensus 258 ---sTrl~i~Qg 266 (793)
T KOG1881|consen 258 ---STRLYIFQG 266 (793)
T ss_pred ---ceEEEEeeC
Confidence 344555543
No 53
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00033 Score=64.12 Aligned_cols=57 Identities=19% Similarity=0.364 Sum_probs=46.8
Q ss_pred hhccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 124 EISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 124 ~~~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
..+......+|++|.+.-..|.+..+|+|.||..|+........ .++||.|...+..
T Consensus 232 sss~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~a----sf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 232 SSSTGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDA----SFTCPLCGENVEP 288 (298)
T ss_pred ccccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchh----hcccCccCCCCcc
Confidence 34556788999999999999999878999999999987655332 5899999887764
No 54
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.15 E-value=0.00026 Score=69.56 Aligned_cols=51 Identities=35% Similarity=0.731 Sum_probs=44.6
Q ss_pred ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
..+.+.|++|...+.+|+....|||.||..|+..|+... ..||.|+.....
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~------~~cp~~~~~~~~ 68 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNH------QKCPVCRQELTQ 68 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccC------cCCcccccccch
Confidence 457899999999999999844999999999999999874 489999887765
No 55
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.00 E-value=0.00023 Score=73.14 Aligned_cols=50 Identities=28% Similarity=0.551 Sum_probs=40.2
Q ss_pred cCCceeccccccccCccEe--CCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 129 IEHAKCCICLNIWHDVVTV--APCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~Pv~l--~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
...-.|++|+.-+.+-... .+|+|.||..||..|-+..+ +||+||..+..
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aq------TCPiDR~EF~~ 172 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQ------TCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcc------cCchhhhhhhe
Confidence 4567899999877654221 27999999999999998765 99999998876
No 56
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.00081 Score=64.52 Aligned_cols=56 Identities=27% Similarity=0.755 Sum_probs=42.6
Q ss_pred cCCceeccccccccCcc-----E--eCCCCCcccHhhHHHHHHhccC-CCCCcCCCCCCccccc
Q 019461 129 IEHAKCCICLNIWHDVV-----T--VAPCLHNFCNGCFSEWLRRSQE-KRSTVLCPHCRAVVQF 184 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~Pv-----~--l~pCgH~FC~~Cl~~~~~~~~~-~~~~~~CP~Cr~~~~~ 184 (340)
..+..|.||++...+.. . +.+|.|.||..|+..|...... ..-...||.||.....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 45789999999887765 2 2379999999999999854321 1224689999998776
No 57
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=96.73 E-value=0.003 Score=67.16 Aligned_cols=83 Identities=16% Similarity=0.245 Sum_probs=67.4
Q ss_pred ccEEEEeCCCC--Cce---eEeeCCceEEec-------ccccCC-ccccceEEEEEeCCCCeEEEEeccCCceEeccEec
Q 019461 16 IWAKLEPSDSR--FAD---VDISSNEVVICS-------EITSSS-SDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMV 82 (340)
Q Consensus 16 ~~~~L~~~~~~--~~~---~~l~~~~~~iGr-------~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~StNgt~vng~~i 82 (340)
.-+-||-++.. ++. +.|.++..+||| ||.+++ .|--.||.|+-++++.-++|.---.--|||||+.|
T Consensus 453 k~phLVNLneDPllSe~LlY~ikeG~TrVG~~~a~~~~DI~LsG~~I~~qHC~i~~~~g~~~vtl~p~e~aetyVNGk~v 532 (1221)
T KOG0245|consen 453 KTPHLVNLNEDPLLSECLLYYIKEGETRVGREDASSRQDIVLSGQLIREQHCSIRNEGGNDVVTLEPCEDAETYVNGKLV 532 (1221)
T ss_pred cCcceeccCCCchhhccEEEEeccCceecCCCCcccCCceEecchhhhhhceEEEecCCCceEEeccCCccceeEccEEc
Confidence 44557776652 233 478889999998 799999 99999999988876655777777788899999999
Q ss_pred CCCceeeccCCCeeccCC
Q 019461 83 QNEEVVDIKCGTEIIPGP 100 (340)
Q Consensus 83 ~~~~~~~l~~gd~I~lg~ 100 (340)
.. ..+|..||+|.+|.
T Consensus 533 ~e--p~qL~~GdRiilG~ 548 (1221)
T KOG0245|consen 533 TE--PTQLRSGDRIILGG 548 (1221)
T ss_pred CC--cceeccCCEEEEcC
Confidence 85 57899999999996
No 58
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=96.61 E-value=0.0029 Score=62.91 Aligned_cols=92 Identities=18% Similarity=0.181 Sum_probs=73.8
Q ss_pred ccEEEEeCCCCCceeEeeCCceEEec-------ccccCC-----ccccceEEEEEeCCCCeEEEEeccCCceEeccEecC
Q 019461 16 IWAKLEPSDSRFADVDISSNEVVICS-------EITSSS-----SDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQ 83 (340)
Q Consensus 16 ~~~~L~~~~~~~~~~~l~~~~~~iGr-------~~~~~~-----~vS~~H~~i~~~~~~~~~~i~D~StNgt~vng~~i~ 83 (340)
..|.+--+.+.+..+.+.+.+++||| ||++.. .|||+-+.|....++ .|+|.++..-..||||..|.
T Consensus 429 ~hgAiAvL~Gr~skh~mrk~EVtlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n~G-sF~IkNlGK~~I~vng~~l~ 507 (547)
T KOG2293|consen 429 FHGAIAVLYGRFSKHYMRKKEVTLGRATGDLKVDIDLGKEGPATKISRRQALIKLKNDG-SFFIKNLGKRSILVNGGELD 507 (547)
T ss_pred hcceeEEEechhhHhhhcCcceEeeccCCCcceeeeccccCccceeeccceeEEeccCC-cEEeccCcceeEEeCCcccc
Confidence 45556667777788899999999999 455442 799999999887554 79999999999999999999
Q ss_pred CCceeeccCCCeeccCCCCcceeccccccc
Q 019461 84 NEEVVDIKCGTEIIPGPDREVYLNFRFKVV 113 (340)
Q Consensus 84 ~~~~~~l~~gd~I~lg~~~~~~~~y~f~i~ 113 (340)
.|+.+.|++.-.|.+.. ..|+|.+.
T Consensus 508 ~gq~~~L~~nclveIrg-----~~FiF~~N 532 (547)
T KOG2293|consen 508 RGQKVILKNNCLVEIRG-----LRFIFEIN 532 (547)
T ss_pred CCceEEeccCcEEEEcc-----ceEEEeec
Confidence 99999999988776543 45666544
No 59
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only]
Probab=96.58 E-value=0.0012 Score=61.32 Aligned_cols=70 Identities=9% Similarity=0.118 Sum_probs=59.8
Q ss_pred EeeCCceEEec-----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCCCceeeccCCCeeccCC
Q 019461 31 DISSNEVVICS-----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQNEEVVDIKCGTEIIPGP 100 (340)
Q Consensus 31 ~l~~~~~~iGr-----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~~~~~~l~~gd~I~lg~ 100 (340)
.+.+..+.+|| |..++. ..||.|+.+....-...+++.|+ |+.|||+...++.....+++..|....+|-
T Consensus 34 iddkr~y~Fgrn~q~~df~idh~scSrvhaa~vyhkhl~~~~lidl~s~hgtf~g~~rL~~~~p~~l~i~~~~~fga 110 (337)
T KOG1880|consen 34 IDDKRRYLFGRNHQTCDFVIDHASCSRVHAALVYHKHLSRIFLIDLGSTHGTFLGNERLEPHKPVQLEIGSTFHFGA 110 (337)
T ss_pred hhhhhhhhhccCCCccceEeecchhhhhHhhhhhhhccceEEEEEccCCcceeeeeeeeccCCCccccCCceEEEec
Confidence 44556799999 456665 89999999988876767999999 999999999999999999999998887775
No 60
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0043 Score=59.97 Aligned_cols=65 Identities=20% Similarity=0.501 Sum_probs=41.6
Q ss_pred CCceecccccccc--CccEeCCCCCcccHhhHHHHHHhcc--CCCCCcCCCCCCccccccCcchHHHHHHH
Q 019461 130 EHAKCCICLNIWH--DVVTVAPCLHNFCNGCFSEWLRRSQ--EKRSTVLCPHCRAVVQFVGRNHYLHNIEQ 196 (340)
Q Consensus 130 e~l~C~IC~~~~~--~Pv~l~pCgH~FC~~Cl~~~~~~~~--~~~~~~~CP~Cr~~~~~~~~n~~l~~lve 196 (340)
..+.|.||++... .-+..+||+|.||++|+..+..... .......||.+...-...+ -.+.++|+
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a~~--g~vKelvg 251 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVAPP--GQVKELVG 251 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcccCCc--hHHHHHHH
Confidence 4679999999763 4555569999999999998875321 1123467887654332221 24555554
No 61
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.49 E-value=0.009 Score=60.89 Aligned_cols=88 Identities=6% Similarity=0.043 Sum_probs=76.7
Q ss_pred cEEEEeCCCCCceeEeeCCceEEec--ccccCC-ccccceEEEEEeCCCCeEEEEeccCCceEeccEecCCCceeeccCC
Q 019461 17 WAKLEPSDSRFADVDISSNEVVICS--EITSSS-SDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNEEVVDIKCG 93 (340)
Q Consensus 17 ~~~L~~~~~~~~~~~l~~~~~~iGr--~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~StNgt~vng~~i~~~~~~~l~~g 93 (340)
.-.|+|.++..+.|.|.....+||| +-.+.| .-||+-.++.-+-....+.+.-|..|-+-|||+.++++..+.|++|
T Consensus 14 ~c~l~~~~~~~~~~~~~~~~~~~gr~pet~i~d~~cs~~qv~l~a~~~~~~v~~k~lg~np~~~~~~~~~~~~~~~l~~g 93 (526)
T TIGR01663 14 ICTLKPGEAEHHFIHLDAGALFLGRGPETGIRDRKCSKRQIELQADLEKATVALKQLGVNPCGTGGLELKPGGEGELGHG 93 (526)
T ss_pred eeEecCCCCCCCeeccCCCceEEccCcccccchhhhchhhheeeecccCceEEEEEccCCCcccCceEecCCCeeeecCC
Confidence 3447888888899999989999999 566777 8999999999887777799999999999999999999999999999
Q ss_pred CeeccCCCCcc
Q 019461 94 TEIIPGPDREV 104 (340)
Q Consensus 94 d~I~lg~~~~~ 104 (340)
|.+.+....-.
T Consensus 94 ~~l~~v~~~~~ 104 (526)
T TIGR01663 94 DLLEIVNGLHP 104 (526)
T ss_pred CEEEEeccccc
Confidence 99998875543
No 62
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.41 E-value=0.0016 Score=48.13 Aligned_cols=53 Identities=28% Similarity=0.595 Sum_probs=25.0
Q ss_pred Cceecccccccc-C---ccEeC---CCCCcccHhhHHHHHHhccCCCC-----CcCCCCCCcccc
Q 019461 131 HAKCCICLNIWH-D---VVTVA---PCLHNFCNGCFSEWLRRSQEKRS-----TVLCPHCRAVVQ 183 (340)
Q Consensus 131 ~l~C~IC~~~~~-~---Pv~l~---pCgH~FC~~Cl~~~~~~~~~~~~-----~~~CP~Cr~~~~ 183 (340)
++.|+||...+. + |...= .|+..|...||.+|+........ ...||.|++++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 578999998765 2 32221 48999999999999986432111 236999998875
No 63
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.21 E-value=0.0022 Score=63.53 Aligned_cols=55 Identities=25% Similarity=0.667 Sum_probs=44.6
Q ss_pred ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
...+..|.+|.+.-.+++.. .|.|.||+.|+.++...-.+.. ..+||+|...+..
T Consensus 533 nk~~~~C~lc~d~aed~i~s-~ChH~FCrlCi~eyv~~f~~~~-nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDYIES-SCHHKFCRLCIKEYVESFMENN-NVTCPVCHIGLSI 587 (791)
T ss_pred ccCceeecccCChhhhhHhh-hhhHHHHHHHHHHHHHhhhccc-CCCCccccccccc
Confidence 34678999999999999999 9999999999988876543222 3899999876653
No 64
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.0072 Score=57.10 Aligned_cols=62 Identities=29% Similarity=0.659 Sum_probs=50.3
Q ss_pred Cceeccccccc------cCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc-------cCcchHHHHHHHH
Q 019461 131 HAKCCICLNIW------HDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF-------VGRNHYLHNIEQS 197 (340)
Q Consensus 131 ~l~C~IC~~~~------~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~-------~~~n~~l~~lve~ 197 (340)
.+.|-||.+.| +-|..| .|||+||..|+........ ..||.||..... +..|+.+..+++.
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l-~c~h~~c~~c~~~l~~~~~-----i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~ 76 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVL-KCGHTICQNCASKLLGNSR-----ILCPFCRETTEIPDGDVKSLQKNFALLQAIEH 76 (296)
T ss_pred CCceeecCccccccCcccCCccc-ccCceehHhHHHHHhcCce-----eeccCCCCcccCCchhHhhhhhhHHHHHHHHH
Confidence 46789999887 468888 8999999999998877654 689999998432 7788888888876
Q ss_pred H
Q 019461 198 I 198 (340)
Q Consensus 198 ~ 198 (340)
.
T Consensus 77 ~ 77 (296)
T KOG4185|consen 77 M 77 (296)
T ss_pred H
Confidence 5
No 65
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.0063 Score=57.94 Aligned_cols=49 Identities=33% Similarity=0.768 Sum_probs=41.1
Q ss_pred cCCceeccccccccCccEeCCCCC-cccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 129 IEHAKCCICLNIWHDVVTVAPCLH-NFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~Pv~l~pCgH-~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
+....|-||+.-.++-+.| ||.| -.|..|.....-+.+ .||.||+.+..
T Consensus 288 ~~gkeCVIClse~rdt~vL-PCRHLCLCs~Ca~~Lr~q~n------~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVL-PCRHLCLCSGCAKSLRYQTN------NCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcceEEe-cchhhehhHhHHHHHHHhhc------CCCccccchHh
Confidence 4468999999999999888 9999 469999987765544 79999998765
No 66
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.59 E-value=0.0046 Score=59.41 Aligned_cols=49 Identities=31% Similarity=0.738 Sum_probs=41.4
Q ss_pred CceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 131 HAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 131 ~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
.-.|.||-+-=++-..- ||||-.|..|+..|..... ...||.||.++..
T Consensus 369 FeLCKICaendKdvkIE-PCGHLlCt~CLa~WQ~sd~----gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 369 FELCKICAENDKDVKIE-PCGHLLCTSCLAAWQDSDE----GQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHHhhccCCCcccc-cccchHHHHHHHhhcccCC----CCCCCceeeEecc
Confidence 44799999988888777 9999999999999986542 4689999999876
No 67
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.025 Score=55.57 Aligned_cols=48 Identities=23% Similarity=0.596 Sum_probs=33.6
Q ss_pred CCceeccccccccCc----cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCC
Q 019461 130 EHAKCCICLNIWHDV----VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHC 178 (340)
Q Consensus 130 e~l~C~IC~~~~~~P----v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~C 178 (340)
...+|.||..-...+ .++ -|+|.||..|+.+........+....||.=
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~-~C~H~fC~~C~k~~iev~~~~~~~~~C~~~ 196 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVL-KCGHRFCKDCVKQHIEVKLLSGTVIRCPHD 196 (384)
T ss_pred ccccCccCccccccHhhhHHHh-cccchhhhHHhHHHhhhhhccCCCccCCCC
Confidence 467999999433322 233 699999999999988755434456788743
No 68
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.004 Score=43.07 Aligned_cols=47 Identities=30% Similarity=0.564 Sum_probs=38.6
Q ss_pred ceeccccccccCccEeCCCCC-cccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 132 AKCCICLNIWHDVVTVAPCLH-NFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 132 l~C~IC~~~~~~Pv~l~pCgH-~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
-.|.||.+--.+-|.- -||| -.|..|-.+.++... ..||.||+++..
T Consensus 8 dECTICye~pvdsVlY-tCGHMCmCy~Cg~rl~~~~~-----g~CPiCRapi~d 55 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLY-TCGHMCMCYACGLRLKKALH-----GCCPICRAPIKD 55 (62)
T ss_pred cceeeeccCcchHHHH-HcchHHhHHHHHHHHHHccC-----CcCcchhhHHHH
Confidence 5799999998888877 8999 569999888776432 589999998764
No 69
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.35 E-value=0.017 Score=39.56 Aligned_cols=42 Identities=26% Similarity=0.679 Sum_probs=32.6
Q ss_pred eeccccc--cccCccEeCCCC-----CcccHhhHHHHHHhccCCCCCcCCCCCC
Q 019461 133 KCCICLN--IWHDVVTVAPCL-----HNFCNGCFSEWLRRSQEKRSTVLCPHCR 179 (340)
Q Consensus 133 ~C~IC~~--~~~~Pv~l~pCg-----H~FC~~Cl~~~~~~~~~~~~~~~CP~Cr 179 (340)
.|-||++ .-.+|... ||. |.+...|+.+|+..+. ...||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~-PC~C~G~~~~vH~~Cl~~W~~~~~----~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVS-PCRCKGSLKYVHQECLERWINESG----NKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEe-ccccCCchhHHHHHHHHHHHHHcC----CCcCCCCC
Confidence 3789987 34567766 995 7899999999998764 35899984
No 70
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.015 Score=56.20 Aligned_cols=50 Identities=28% Similarity=0.731 Sum_probs=40.2
Q ss_pred CCceeccccccccCc-----cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 130 EHAKCCICLNIWHDV-----VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 130 e~l~C~IC~~~~~~P-----v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
...+||||++-+.-| +.+ .|||-|-..|+++|+.+. ....||.|..+...
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl-~cghlFgs~cie~wl~k~----~~~~cp~c~~katk 57 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSL-QCGHLFGSQCIEKWLGKK----TKMQCPLCSGKATK 57 (463)
T ss_pred ccccCceeeeeeeecCceEEeee-cccccccHHHHHHHHhhh----hhhhCcccCChhHH
Confidence 457999999998655 455 899999999999999532 35789999877654
No 71
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.011 Score=58.35 Aligned_cols=50 Identities=26% Similarity=0.773 Sum_probs=37.8
Q ss_pred cCCceecccccccc-----C-----------ccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461 129 IEHAKCCICLNIWH-----D-----------VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183 (340)
Q Consensus 129 ~e~l~C~IC~~~~~-----~-----------Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 183 (340)
+....|+||+.... . -.++.||.|.|...|+.+|+..-+ ..||+||..+.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~yk-----l~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYK-----LICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhc-----ccCCccCCCCC
Confidence 45678999996541 0 123449999999999999998543 68999998764
No 72
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.01 Score=54.42 Aligned_cols=50 Identities=22% Similarity=0.576 Sum_probs=39.3
Q ss_pred CCceeccccccccC----------ccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 130 EHAKCCICLNIWHD----------VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 130 e~l~C~IC~~~~~~----------Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
++-.|+||.+-+.. -.+| +|+|.|...||..|---++ ..+||.|++.+..
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~L-sCnHvFHEfCIrGWcivGK----kqtCPYCKekVdl 282 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKL-SCNHVFHEFCIRGWCIVGK----KQTCPYCKEKVDL 282 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheee-ecccchHHHhhhhheeecC----CCCCchHHHHhhH
Confidence 56689999987643 3467 9999999999999976443 3589999988765
No 73
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.26 E-value=0.016 Score=61.18 Aligned_cols=50 Identities=28% Similarity=0.759 Sum_probs=38.9
Q ss_pred CCceecccccccc-CccEe-----CCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461 130 EHAKCCICLNIWH-DVVTV-----APCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183 (340)
Q Consensus 130 e~l~C~IC~~~~~-~Pv~l-----~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 183 (340)
-.-.|+||..++. --.++ .-|.|-|..+|+-+|++.++ ..+||.||..++
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~----~s~CPlCRseit 1523 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSA----RSNCPLCRSEIT 1523 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcC----CCCCCccccccc
Confidence 4568999999886 11222 14999999999999999764 579999998765
No 74
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=0.011 Score=43.85 Aligned_cols=48 Identities=33% Similarity=0.697 Sum_probs=35.5
Q ss_pred eecccccccc------------CccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461 133 KCCICLNIWH------------DVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183 (340)
Q Consensus 133 ~C~IC~~~~~------------~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 183 (340)
+|.||.-.|. -|.++--|.|.|-..||.+|+.... ....||.||+..+
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~t---sq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPT---SQGQCPMCRQTWQ 81 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCcc---ccccCCcchheeE
Confidence 7777776663 1444435999999999999998654 2358999998764
No 75
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=93.97 E-value=0.035 Score=41.55 Aligned_cols=30 Identities=30% Similarity=0.721 Sum_probs=26.4
Q ss_pred CCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 149 PCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 149 pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
-|.|.|...||.+|+...+ .||.+|++...
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~------~CPld~q~w~~ 82 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKG------VCPLDRQTWVL 82 (88)
T ss_pred ecchHHHHHHHHHHHhhCC------CCCCCCceeEE
Confidence 5999999999999999865 89999987654
No 76
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=93.67 E-value=0.1 Score=55.56 Aligned_cols=100 Identities=16% Similarity=0.192 Sum_probs=75.5
Q ss_pred ccccCCCCCccccEEEEeCCC----CCceeEeeCCceEEec------ccccCC-ccccceEEEEEeCCCCeEEEEeccCC
Q 019461 5 GECSASKPSREIWAKLEPSDS----RFADVDISSNEVVICS------EITSSS-SDKHEWCKITRNSDLHSAKMQNKSSN 73 (340)
Q Consensus 5 ~~~~~~~~~~~~~~~L~~~~~----~~~~~~l~~~~~~iGr------~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~StN 73 (340)
|..+.+.++++.-..||-+.. +...|.|..+.+-+|. .|.+.+ .|-.+||.|....+. ++++-.+++
T Consensus 344 ~~v~g~~~~~~~lPvLve~s~dG~~s~~ri~L~~~vtEVGs~~~~~~~iqLfGP~IqprHc~it~meGV--vTvTP~~~D 421 (1629)
T KOG1892|consen 344 GSVYGSTLPPEKLPVLVELSPDGSDSRKRIRLQLSVTEVGSEKLDDNSIQLFGPGIQPRHCDITNMEGV--VTVTPRSMD 421 (1629)
T ss_pred CcccCCCCCcccCcEEEEEcCCCCCcceeEEeccCceeccccccCCcceeeeCCCCCccccchhhccce--EEecccccc
Confidence 455666667787777876443 2255788888888998 367777 899999999887655 999999875
Q ss_pred c-eEeccEecCCCceeeccCCCeeccCCCCcceecccccc
Q 019461 74 A-ILVDDTMVQNEEVVDIKCGTEIIPGPDREVYLNFRFKV 112 (340)
Q Consensus 74 g-t~vng~~i~~~~~~~l~~gd~I~lg~~~~~~~~y~f~i 112 (340)
+ |||||.+|.. ...|.+|+.|.+|. .-+|+|..
T Consensus 422 A~t~VnGh~isq--ttiL~~G~~v~fGa----~hsfkF~d 455 (1629)
T KOG1892|consen 422 AETYVNGHRISQ--TTILQSGMKVQFGA----SHSFKFVD 455 (1629)
T ss_pred hhhhccceecch--hhhhccCCEEEecc----ceeEEecC
Confidence 4 8999999875 56899999999997 33455543
No 77
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=0.046 Score=51.95 Aligned_cols=51 Identities=31% Similarity=0.595 Sum_probs=43.2
Q ss_pred cccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 127 IDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 127 ~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
.+.|+-.||||.---.+.+.. ||+|.-|..||.+.+.+.+ .|-.|+..+..
T Consensus 418 p~sEd~lCpICyA~pi~Avf~-PC~H~SC~~CI~qHlmN~k------~CFfCktTv~~ 468 (489)
T KOG4692|consen 418 PDSEDNLCPICYAGPINAVFA-PCSHRSCYGCITQHLMNCK------RCFFCKTTVID 468 (489)
T ss_pred CCcccccCcceecccchhhcc-CCCCchHHHHHHHHHhcCC------eeeEecceeee
Confidence 446888999999888888888 9999999999999988764 89999877653
No 78
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=93.24 E-value=0.14 Score=43.47 Aligned_cols=56 Identities=23% Similarity=0.572 Sum_probs=37.6
Q ss_pred CCceeccccccccCccEeCC-----------CCCcc-cHhhHHHHHHhccC-------------------------CCCC
Q 019461 130 EHAKCCICLNIWHDVVTVAP-----------CLHNF-CNGCFSEWLRRSQE-------------------------KRST 172 (340)
Q Consensus 130 e~l~C~IC~~~~~~Pv~l~p-----------CgH~F-C~~Cl~~~~~~~~~-------------------------~~~~ 172 (340)
|+.+||||++.-++.|.|+- |+.+| ...||.++.+.... ....
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPE 80 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccc
Confidence 46899999999999999841 33222 23577766543111 1125
Q ss_pred cCCCCCCcccccc
Q 019461 173 VLCPHCRAVVQFV 185 (340)
Q Consensus 173 ~~CP~Cr~~~~~~ 185 (340)
..||.||..+...
T Consensus 81 L~CPLCRG~V~GW 93 (162)
T PF07800_consen 81 LACPLCRGEVKGW 93 (162)
T ss_pred ccCccccCceece
Confidence 7899999999873
No 79
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.01 E-value=0.034 Score=50.36 Aligned_cols=47 Identities=23% Similarity=0.699 Sum_probs=33.5
Q ss_pred Cceeccccccc-cCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccccc
Q 019461 131 HAKCCICLNIW-HDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFV 185 (340)
Q Consensus 131 ~l~C~IC~~~~-~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~ 185 (340)
...|..|...- .+|..|+.|+|.||..|...... -.||.|++.+..+
T Consensus 3 ~VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~--------~~C~lCkk~ir~i 50 (233)
T KOG4739|consen 3 FVHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP--------DVCPLCKKSIRII 50 (233)
T ss_pred eEEeccccccCCCCceeeeechhhhhhhhcccCCc--------cccccccceeeee
Confidence 34677666532 56777779999999999753221 2799999997763
No 80
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.73 E-value=0.02 Score=53.00 Aligned_cols=44 Identities=30% Similarity=0.628 Sum_probs=35.2
Q ss_pred CCceeccccccccCccEeCCCCCc-ccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 130 EHAKCCICLNIWHDVVTVAPCLHN-FCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 130 e~l~C~IC~~~~~~Pv~l~pCgH~-FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
....|.||++.-.+.+.| +|||. -|..|-.+. ..||+||+.+..
T Consensus 299 ~~~LC~ICmDaP~DCvfL-eCGHmVtCt~CGkrm----------~eCPICRqyi~r 343 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDCVFL-ECGHMVTCTKCGKRM----------NECPICRQYIVR 343 (350)
T ss_pred HHHHHHHHhcCCcceEEe-ecCcEEeehhhcccc----------ccCchHHHHHHH
Confidence 367899999999999999 99995 488884332 279999987654
No 81
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=92.52 E-value=0.079 Score=36.01 Aligned_cols=44 Identities=25% Similarity=0.572 Sum_probs=20.4
Q ss_pred ecccccccc--CccEe-CCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccc
Q 019461 134 CCICLNIWH--DVVTV-APCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVV 182 (340)
Q Consensus 134 C~IC~~~~~--~Pv~l-~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~ 182 (340)
||+|.+.+. +--.. =+|++..|..|..+.+.... ..||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~-----g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEG-----GRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS------SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccC-----CCCCCCCCCC
Confidence 677777662 21122 15888999999988876432 5899999864
No 82
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.51 E-value=0.2 Score=46.62 Aligned_cols=47 Identities=19% Similarity=0.633 Sum_probs=35.6
Q ss_pred eeccccc-cccCc---cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 133 KCCICLN-IWHDV---VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 133 ~C~IC~~-~~~~P---v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
.||+|+. .|.+| ....+|+|+.|.+|+...+..+. ..||.|...+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~-----~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGP-----AQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCC-----CCCCcccchhhh
Confidence 4899985 56666 22238999999999999887654 789999766543
No 83
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.48 E-value=0.072 Score=51.30 Aligned_cols=49 Identities=29% Similarity=0.710 Sum_probs=34.1
Q ss_pred ceeccccccccCcc---EeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461 132 AKCCICLNIWHDVV---TVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183 (340)
Q Consensus 132 l~C~IC~~~~~~Pv---~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 183 (340)
..|.||.+.+-.-. .+-.|||+|...|+..|+.... ..-.||+|+-.+.
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~P---s~R~cpic~ik~~ 56 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDP---SNRGCPICQIKLQ 56 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCC---ccCCCCceeeccc
Confidence 47999977663221 1113999999999999998653 1148999984433
No 84
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=92.25 E-value=0.15 Score=42.12 Aligned_cols=57 Identities=21% Similarity=0.551 Sum_probs=45.8
Q ss_pred hccccCCceeccccccccCccEeCC---CCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 125 ISIDIEHAKCCICLNIWHDVVTVAP---CLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 125 ~~~~~e~l~C~IC~~~~~~Pv~l~p---CgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
+-.+..-..|.||.+...+...|-| ||-+.|..|....|+... ..-.||.|+..+..
T Consensus 74 vF~d~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~---~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 74 VFLDPKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCN---LYPVCPVCKTSFKS 133 (140)
T ss_pred eecCCCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcc---cCCCCCcccccccc
Confidence 3444567899999999988877755 999999999999998764 23479999987764
No 85
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.13 E-value=0.095 Score=41.17 Aligned_cols=27 Identities=33% Similarity=0.786 Sum_probs=24.3
Q ss_pred CCCCcccHhhHHHHHHhccCCCCCcCCCCCCcc
Q 019461 149 PCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAV 181 (340)
Q Consensus 149 pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~ 181 (340)
-|.|.|...||.+|++..+ .||.|.+.
T Consensus 80 ~CNHaFH~hCisrWlktr~------vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRN------VCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhcC------cCCCcCcc
Confidence 4999999999999999886 89999765
No 86
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.06 E-value=0.055 Score=52.14 Aligned_cols=51 Identities=27% Similarity=0.582 Sum_probs=39.6
Q ss_pred cCCceecccccccc---CccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461 129 IEHAKCCICLNIWH---DVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183 (340)
Q Consensus 129 ~e~l~C~IC~~~~~---~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 183 (340)
+-+|.|..|.+.+- +-...+||.|.|..+|+.+++.++ +.-+||.||+...
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n----~~rsCP~CrklrS 416 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENN----GTRSCPNCRKLRS 416 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhC----CCCCCccHHHHHh
Confidence 45799999999873 223445999999999999999665 3578999995444
No 87
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=91.78 E-value=0.13 Score=48.82 Aligned_cols=62 Identities=19% Similarity=0.445 Sum_probs=46.7
Q ss_pred cccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccccCcchHHHHHHHHH
Q 019461 127 IDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQSI 198 (340)
Q Consensus 127 ~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~n~~l~~lve~~ 198 (340)
...+-|.||||.+.+..|+.-=+=||.-|..|-.+.. ..||.||..+.. .+++.+..+++..
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~---------~~CP~Cr~~~g~-~R~~amEkV~e~~ 105 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVS---------NKCPTCRLPIGN-IRCRAMEKVAEAV 105 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhhhc---------ccCCcccccccc-HHHHHHHHHHHhc
Confidence 3457899999999999997752337999999975322 379999999884 4677777776543
No 88
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.60 E-value=0.079 Score=50.66 Aligned_cols=46 Identities=30% Similarity=0.628 Sum_probs=36.0
Q ss_pred cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
.....|.||.+-..+.+.+ ||||.-| |..-.... ..||.||..+..
T Consensus 303 ~~p~lcVVcl~e~~~~~fv-pcGh~cc--ct~cs~~l-------~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSAVFV-PCGHVCC--CTLCSKHL-------PQCPVCRQRIRL 348 (355)
T ss_pred CCCCceEEecCCccceeee-cCCcEEE--chHHHhhC-------CCCchhHHHHHH
Confidence 3467899999999998888 9999977 76544332 369999998765
No 89
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=91.27 E-value=0.1 Score=36.40 Aligned_cols=45 Identities=24% Similarity=0.589 Sum_probs=34.6
Q ss_pred CCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183 (340)
Q Consensus 130 e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 183 (340)
.+..|-.|...-...+++ ||+|..|..|...+-. ..||.|..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~-pCgH~I~~~~f~~~rY--------ngCPfC~~~~~ 50 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVL-PCGHLICDNCFPGERY--------NGCPFCGTPFE 50 (55)
T ss_pred cceeEEEccccccccccc-cccceeeccccChhhc--------cCCCCCCCccc
Confidence 456777788777778788 9999999999865432 26999988764
No 90
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.05 E-value=0.2 Score=47.69 Aligned_cols=56 Identities=25% Similarity=0.460 Sum_probs=41.8
Q ss_pred hhccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 124 EISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 124 ~~~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
....+++...|-||-+-+.=-..+ ||+|..|.-|..+...--. ...||.||.....
T Consensus 54 addtDEen~~C~ICA~~~TYs~~~-PC~H~~CH~Ca~RlRALY~----~K~C~~CrTE~e~ 109 (493)
T COG5236 54 ADDTDEENMNCQICAGSTTYSARY-PCGHQICHACAVRLRALYM----QKGCPLCRTETEA 109 (493)
T ss_pred ccccccccceeEEecCCceEEEec-cCCchHHHHHHHHHHHHHh----ccCCCccccccce
Confidence 345677889999999987765566 9999999999876433211 2589999987544
No 91
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.62 E-value=0.24 Score=45.04 Aligned_cols=49 Identities=12% Similarity=0.285 Sum_probs=40.8
Q ss_pred CCceeccccccccCc---cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 130 EHAKCCICLNIWHDV---VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 130 e~l~C~IC~~~~~~P---v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
..+.||+|.+.|.+. +.|-||||.||..|.++.++.. ..||+|..+...
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D------~v~pv~d~plkd 271 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD------MVDPVTDKPLKD 271 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc------ccccCCCCcCcc
Confidence 678999999999764 3444999999999999988765 489999887664
No 92
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=89.82 E-value=0.27 Score=46.62 Aligned_cols=52 Identities=27% Similarity=0.563 Sum_probs=36.2
Q ss_pred ccccCCceecccccccc--Cc--cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 126 SIDIEHAKCCICLNIWH--DV--VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 126 ~~~~e~l~C~IC~~~~~--~P--v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
+.++++. ||+|.+.+. +- .-. |||-..|.-|.......-+ ..||.||.....
T Consensus 10 sedeed~-cplcie~mditdknf~pc-~cgy~ic~fc~~~irq~ln-----grcpacrr~y~d 65 (480)
T COG5175 10 SEDEEDY-CPLCIEPMDITDKNFFPC-PCGYQICQFCYNNIRQNLN-----GRCPACRRKYDD 65 (480)
T ss_pred ccccccc-CcccccccccccCCcccC-CcccHHHHHHHHHHHhhcc-----CCChHhhhhccc
Confidence 3445555 999998763 21 223 7888889999877655443 489999987765
No 93
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=89.54 E-value=0.14 Score=53.89 Aligned_cols=47 Identities=30% Similarity=0.760 Sum_probs=39.3
Q ss_pred ceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 132 AKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 132 l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
..|.+|.+ ...++.+ +|+|.||..|+........ ...||.||..+..
T Consensus 455 ~~c~ic~~-~~~~~it-~c~h~~c~~c~~~~i~~~~----~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFIT-RCGHDFCVECLKKSIQQSE----NAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceee-cccchHHHHHHHhcccccc----CCCCcHHHHHHHH
Confidence 89999999 7777777 9999999999998887654 2379999987664
No 94
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=89.29 E-value=0.11 Score=53.99 Aligned_cols=71 Identities=17% Similarity=0.389 Sum_probs=50.7
Q ss_pred hccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHH
Q 019461 125 ISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSIL 199 (340)
Q Consensus 125 ~~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~ 199 (340)
+..+...+.|+||...+++|+.+ .|.|.||..|+...+...+ ....||+|+..+.. .+.......++..++
T Consensus 15 i~~~~k~lEc~ic~~~~~~p~~~-kc~~~~l~~~~n~~f~~~~---~~~~~~lc~~~~eK~s~~Es~r~sq~vqe~l 87 (684)
T KOG4362|consen 15 INAMQKILECPICLEHVKEPSLL-KCDHIFLKFCLNKLFESKK---GPKQCALCKSDIEKRSLRESPRFSQLSKESL 87 (684)
T ss_pred HHHHhhhccCCceeEEeeccchh-hhhHHHHhhhhhceeeccC---ccccchhhhhhhhhhhccccchHHHHHHHhc
Confidence 34556789999999999999887 9999999999876554332 25689999866654 333444444454443
No 95
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=89.12 E-value=1.1 Score=44.41 Aligned_cols=57 Identities=7% Similarity=0.042 Sum_probs=43.3
Q ss_pred CceeEeeCCceEEe-c----ccccCC-ccccceEEEEEeCCCCeEEEEeccCCceEecc--EecCCCc
Q 019461 27 FADVDISSNEVVIC-S----EITSSS-SDKHEWCKITRNSDLHSAKMQNKSSNAILVDD--TMVQNEE 86 (340)
Q Consensus 27 ~~~~~l~~~~~~iG-r----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~StNgt~vng--~~i~~~~ 86 (340)
..++.|..+.++|| + ++.+.+ .||++|+.|....+. +.+.+. ..+.++|| .....++
T Consensus 12 G~~~~L~~g~~~iG~~~~~~di~L~d~~~~~~h~~l~v~~~~--~~l~~~-~~~~~~~g~~~~~~~g~ 76 (410)
T TIGR02500 12 GAELPLPEGNLVLGTDAADCDIVLSDGGIAAVHVSLHVRLEG--VTLAGA-VEPAWEEGGVLPDEEGT 76 (410)
T ss_pred CcEEECCCCceEeccCCCCcEEEeCCCCccchheEEEEcCce--EEEecC-CcceeECCcccccCCCC
Confidence 45678888999999 6 688888 999999999998654 777754 55677888 4444443
No 96
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.97 E-value=0.19 Score=51.47 Aligned_cols=38 Identities=26% Similarity=0.565 Sum_probs=31.6
Q ss_pred cccCCceeccccccc----cCccEeCCCCCcccHhhHHHHHHh
Q 019461 127 IDIEHAKCCICLNIW----HDVVTVAPCLHNFCNGCFSEWLRR 165 (340)
Q Consensus 127 ~~~e~l~C~IC~~~~----~~Pv~l~pCgH~FC~~Cl~~~~~~ 165 (340)
.+.+.|.|+||.+.| ..|+.+ -|||+.|+.|++...+.
T Consensus 7 ~w~~~l~c~ic~n~f~~~~~~Pvsl-~cghtic~~c~~~lyn~ 48 (861)
T KOG3161|consen 7 KWVLLLLCDICLNLFVVQRLEPVSL-QCGHTICGHCVQLLYNA 48 (861)
T ss_pred hhHHHhhchHHHHHHHHHhcCcccc-cccchHHHHHHHhHhhc
Confidence 345678999998887 479999 99999999999876654
No 97
>PF04641 Rtf2: Rtf2 RING-finger
Probab=88.68 E-value=0.73 Score=42.83 Aligned_cols=50 Identities=20% Similarity=0.336 Sum_probs=39.5
Q ss_pred ccCCceecccccccc---CccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 128 DIEHAKCCICLNIWH---DVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~---~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
....+.|||....|. .-+.+-||||.|+..++.+.- .. ..||+|-.++..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~------~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KS------KKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-cc------ccccccCCcccc
Confidence 356799999999884 345566999999999999873 22 479999998876
No 98
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=87.14 E-value=0.58 Score=32.06 Aligned_cols=48 Identities=21% Similarity=0.441 Sum_probs=25.5
Q ss_pred CceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCc
Q 019461 131 HAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRA 180 (340)
Q Consensus 131 ~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~ 180 (340)
.|.|||....+.-|+....|.|.-|.+ +..++.... ..+...||.|.+
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~-~~~~W~CPiC~~ 49 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQ-RTPKWKCPICNK 49 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHH-HS---B-TTT--
T ss_pred eeeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhh-ccCCeECcCCcC
Confidence 378999999999999998999997754 333443221 123488999975
No 99
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=86.64 E-value=0.51 Score=52.58 Aligned_cols=55 Identities=20% Similarity=0.402 Sum_probs=37.8
Q ss_pred CCceecccccc--ccCccEeCCCCCcccHhhHHHHHHhccCCC----CCcCCCCCCccccc
Q 019461 130 EHAKCCICLNI--WHDVVTVAPCLHNFCNGCFSEWLRRSQEKR----STVLCPHCRAVVQF 184 (340)
Q Consensus 130 e~l~C~IC~~~--~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~----~~~~CP~Cr~~~~~ 184 (340)
.+-.|-||+.. -..|..-+.|+|.|...|..+.+.+.-... +-..||.|..++..
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 45578899863 234544449999999999988776543211 13589999887765
No 100
>PHA03096 p28-like protein; Provisional
Probab=85.53 E-value=0.98 Score=42.53 Aligned_cols=51 Identities=22% Similarity=0.332 Sum_probs=33.1
Q ss_pred ceeccccccccC-c------cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccc
Q 019461 132 AKCCICLNIWHD-V------VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVV 182 (340)
Q Consensus 132 l~C~IC~~~~~~-P------v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~ 182 (340)
-.|.||++...+ + =.|..|-|.||..|+..|............||.|+..+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~ 236 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVI 236 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHH
Confidence 689999986532 1 12226999999999999988654322233455554443
No 101
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.55 E-value=0.99 Score=47.84 Aligned_cols=42 Identities=21% Similarity=0.516 Sum_probs=35.5
Q ss_pred CceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcc
Q 019461 131 HAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAV 181 (340)
Q Consensus 131 ~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~ 181 (340)
.-.|..|.-.+.-|++-..|||+|...|+.+ +...||.|+..
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e~---------~~~~CP~C~~e 881 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLED---------KEDKCPKCLPE 881 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhcc---------CcccCCccchh
Confidence 3599999999999988889999999999982 13589999763
No 102
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.58 E-value=2.5 Score=38.07 Aligned_cols=54 Identities=20% Similarity=0.426 Sum_probs=40.9
Q ss_pred CCceecccccccc--CccEeCCCCCcccHhhHHHHHHhccC--CCCCcCCCCCCccccc
Q 019461 130 EHAKCCICLNIWH--DVVTVAPCLHNFCNGCFSEWLRRSQE--KRSTVLCPHCRAVVQF 184 (340)
Q Consensus 130 e~l~C~IC~~~~~--~Pv~l~pCgH~FC~~Cl~~~~~~~~~--~~~~~~CP~Cr~~~~~ 184 (340)
..-.|.+|...+. +-+.| -|.|.|..+|+.+|..+-.. ....+.||.|..++..
T Consensus 49 Y~pNC~LC~t~La~gdt~RL-vCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTRL-VCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCCCceeCCccccCcceee-hhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 4568999999874 56777 89999999999999865321 1235789999877654
No 103
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=82.34 E-value=0.83 Score=43.31 Aligned_cols=47 Identities=17% Similarity=0.392 Sum_probs=38.8
Q ss_pred CCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccc
Q 019461 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVV 182 (340)
Q Consensus 130 e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~ 182 (340)
+.-.||||+.--.+|..+.--|-.||..|+..++.+.+ .||+-..+.
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~------~CPVT~~p~ 345 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYG------HCPVTGYPA 345 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcC------CCCccCCcc
Confidence 56689999999999988844599999999999998654 899765443
No 104
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=82.29 E-value=0.54 Score=36.95 Aligned_cols=32 Identities=31% Similarity=0.610 Sum_probs=26.0
Q ss_pred cCCceecccccccc-CccEeCCCCCcccHhhHH
Q 019461 129 IEHAKCCICLNIWH-DVVTVAPCLHNFCNGCFS 160 (340)
Q Consensus 129 ~e~l~C~IC~~~~~-~Pv~l~pCgH~FC~~Cl~ 160 (340)
.+.-.|++|...+. .+....||||.|...|+.
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 45667999999876 556667999999999975
No 105
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.49 E-value=1.1 Score=43.55 Aligned_cols=48 Identities=13% Similarity=0.263 Sum_probs=37.2
Q ss_pred CCceecccccccc---CccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcc
Q 019461 130 EHAKCCICLNIWH---DVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAV 181 (340)
Q Consensus 130 e~l~C~IC~~~~~---~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~ 181 (340)
.-+.|||=++.-. -|+.| .|||..++.-+.+..+.+. ..+.||.|-..
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L-~CGHVISkdAlnrLS~ng~---~sfKCPYCP~e 383 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMML-ICGHVISKDALNRLSKNGS---QSFKCPYCPVE 383 (394)
T ss_pred ceeecccchhhccCCCCCeee-eccceecHHHHHHHhhCCC---eeeeCCCCCcc
Confidence 4579999887664 47787 9999999999988776542 35899999654
No 106
>PF12773 DZR: Double zinc ribbon
Probab=81.23 E-value=1.7 Score=29.41 Aligned_cols=18 Identities=33% Similarity=1.047 Sum_probs=8.7
Q ss_pred CccccCCCCCCCCCCCcccccc
Q 019461 274 CQGCGGMMPSRNDSVPQHCLGC 295 (340)
Q Consensus 274 C~~C~~~~p~r~~~~~~~C~~C 295 (340)
|..|....+... .||..|
T Consensus 32 C~~Cg~~~~~~~----~fC~~C 49 (50)
T PF12773_consen 32 CPNCGAENPPNA----KFCPNC 49 (50)
T ss_pred CcCCcCCCcCCc----CccCcc
Confidence 555555533322 255554
No 107
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=81.02 E-value=1.2 Score=42.10 Aligned_cols=51 Identities=24% Similarity=0.413 Sum_probs=31.2
Q ss_pred CCceeccccccc-------------cCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461 130 EHAKCCICLNIW-------------HDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183 (340)
Q Consensus 130 e~l~C~IC~~~~-------------~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 183 (340)
.--.||+=++.| +.|.+-+.|||.--. ..|-.+.+.....-.||.||..-.
T Consensus 289 ~RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~---H~WG~~e~~g~~~r~CPmC~~~gp 352 (429)
T KOG3842|consen 289 ARPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGY---HNWGVRENTGQRERECPMCRVVGP 352 (429)
T ss_pred cCCCCCcccceeecccccccccccccCCeEEEeccccccc---cccccccccCcccCcCCeeeeecc
Confidence 445788877765 245444589996543 245444333334568999987543
No 108
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=80.06 E-value=1.6 Score=48.42 Aligned_cols=49 Identities=31% Similarity=0.743 Sum_probs=36.1
Q ss_pred CCCCCCCCCCCCcccCCCCCcc----cCccccCCCCCCCCCCCccccccccccc
Q 019461 251 LPCPQCGTEINGFHCNQTTVHL----QCQGCGGMMPSRNDSVPQHCLGCDRAFC 300 (340)
Q Consensus 251 ~~C~~C~~~~~~~~C~~~~~hl----~C~~C~~~~p~r~~~~~~~C~~C~~~~C 300 (340)
+.|+.|.......+||.|+.++ .|..|+..++..... .-+|.-|+.+.-
T Consensus 668 rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~-a~~CP~CGtplv 720 (1337)
T PRK14714 668 RRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESG-RVECPRCDVELT 720 (1337)
T ss_pred EECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccc-cccCCCCCCccc
Confidence 6899999877778999999775 599998876654333 447877765543
No 109
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=78.82 E-value=0.92 Score=41.16 Aligned_cols=49 Identities=24% Similarity=0.834 Sum_probs=35.5
Q ss_pred CCceeccccc-cccCc---cEeCC-CCCcccHhhHHHHHHhccCCCCCcCCC--CCCcccc
Q 019461 130 EHAKCCICLN-IWHDV---VTVAP-CLHNFCNGCFSEWLRRSQEKRSTVLCP--HCRAVVQ 183 (340)
Q Consensus 130 e~l~C~IC~~-~~~~P---v~l~p-CgH~FC~~Cl~~~~~~~~~~~~~~~CP--~Cr~~~~ 183 (340)
++-.||||+. .|-+| +.+.| |-|..|.+|+.+.+..+. -.|| -|.+.+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~Gp-----AqCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGP-----AQCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCC-----CCCCCccHHHHHH
Confidence 4568999985 45556 22224 999999999999987654 6899 7765443
No 110
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=77.24 E-value=2.6 Score=44.83 Aligned_cols=61 Identities=26% Similarity=0.576 Sum_probs=43.4
Q ss_pred hhhccccCCceecccccccc--CccE-eCCCCCcccHhhHHHHHHhccC-CCCCcCCCCCCcccc
Q 019461 123 LEISIDIEHAKCCICLNIWH--DVVT-VAPCLHNFCNGCFSEWLRRSQE-KRSTVLCPHCRAVVQ 183 (340)
Q Consensus 123 ~~~~~~~e~l~C~IC~~~~~--~Pv~-l~pCgH~FC~~Cl~~~~~~~~~-~~~~~~CP~Cr~~~~ 183 (340)
+...+....+.|.||.+.+. .|+- -..|.|.|...||.+|.+.... ......||.|+....
T Consensus 183 li~~l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 183 LIEQLSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred HHHHHhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 34455567899999999875 3432 1148899999999999986421 224689999985544
No 111
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=77.03 E-value=2.2 Score=28.20 Aligned_cols=41 Identities=24% Similarity=0.690 Sum_probs=23.1
Q ss_pred eccccccccCccEeC--CCCCcccHhhHHHHHHhccCCCCCcCCCCC
Q 019461 134 CCICLNIWHDVVTVA--PCLHNFCNGCFSEWLRRSQEKRSTVLCPHC 178 (340)
Q Consensus 134 C~IC~~~~~~Pv~l~--pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~C 178 (340)
|.+|.++...-+.-. .|+-.+...|+..+++... ...||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~----~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRS----NPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-S----S-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCC----CCCCcCC
Confidence 678888887766652 3888899999999887653 2369987
No 112
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=76.97 E-value=1.4 Score=48.77 Aligned_cols=51 Identities=33% Similarity=0.662 Sum_probs=41.4
Q ss_pred cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccccc
Q 019461 129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFV 185 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~ 185 (340)
.....|+||.+++++--...-|||.+|..|...|+..+. .||.|......+
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s------~~~~~ksi~~df 1201 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASS------RCPICKSIKGDF 1201 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhc------cCcchhhhhhhh
Confidence 466799999999996555558999999999999998764 899997555443
No 113
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=76.16 E-value=2.5 Score=44.36 Aligned_cols=47 Identities=32% Similarity=0.704 Sum_probs=33.5
Q ss_pred CCCCCCCC--CCCcccCCCCCcc---cCccccCCCCCCCCCCCccccccccccccc
Q 019461 252 PCPQCGTE--INGFHCNQTTVHL---QCQGCGGMMPSRNDSVPQHCLGCDRAFCGA 302 (340)
Q Consensus 252 ~C~~C~~~--~~~~~C~~~~~hl---~C~~C~~~~p~r~~~~~~~C~~C~~~~C~~ 302 (340)
.|++|+.. ....+|+.||..+ .|..|+...|.... ||.-|+.+.=..
T Consensus 3 ~Cp~Cg~~n~~~akFC~~CG~~l~~~~Cp~CG~~~~~~~~----fC~~CG~~~~~~ 54 (645)
T PRK14559 3 ICPQCQFENPNNNRFCQKCGTSLTHKPCPQCGTEVPVDEA----HCPNCGAETGTI 54 (645)
T ss_pred cCCCCCCcCCCCCccccccCCCCCCCcCCCCCCCCCcccc----cccccCCcccch
Confidence 58899653 3456788888664 49999888776444 898888775444
No 114
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=76.08 E-value=4 Score=44.12 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=53.4
Q ss_pred CCceEEec----ccccCC-ccccceEEEEEeCCCCeEEEEeccCCceEeccEecCCCceeeccCCCeeccCC
Q 019461 34 SNEVVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNEEVVDIKCGTEIIPGP 100 (340)
Q Consensus 34 ~~~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~StNgt~vng~~i~~~~~~~l~~gd~I~lg~ 100 (340)
.+...||- +|.+.+ .+=.+||.|..+.++ .+++.-+..--++|||..+-. +..|.+||+|-.|.
T Consensus 466 ~~~tlig~~~~~~i~l~glgi~p~h~vidI~~dg-~l~~~p~~~~R~~VNGs~v~~--~t~L~~GdRiLwGn 534 (1714)
T KOG0241|consen 466 KDHTLIGLFKSQDIQLSGLGIQPKHCVIDIESDG-ELRLTPLLNARSCVNGSLVCS--TTQLWHGDRILWGN 534 (1714)
T ss_pred cCceeeccccCcceeeecCcccCccceeeeccCC-cEEecccccceeeecCceecc--ccccccCceEEecc
Confidence 45677886 688888 899999999998765 488888877799999999875 57899999999885
No 115
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=76.08 E-value=0.7 Score=30.00 Aligned_cols=19 Identities=16% Similarity=0.574 Sum_probs=12.9
Q ss_pred CCccccccccccccccccC
Q 019461 288 VPQHCLGCDRAFCGAYWHA 306 (340)
Q Consensus 288 ~~~~C~~C~~~~C~~y~~~ 306 (340)
+.+||..|+.++|..+...
T Consensus 14 ~~~~C~~C~~~~C~~C~~~ 32 (42)
T PF00643_consen 14 LSLFCEDCNEPLCSECTVS 32 (42)
T ss_dssp EEEEETTTTEEEEHHHHHT
T ss_pred eEEEecCCCCccCccCCCC
Confidence 5667777777777766644
No 116
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=74.59 E-value=1.8 Score=40.47 Aligned_cols=43 Identities=28% Similarity=0.642 Sum_probs=32.9
Q ss_pred Cceecccccccc----CccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCc
Q 019461 131 HAKCCICLNIWH----DVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRA 180 (340)
Q Consensus 131 ~l~C~IC~~~~~----~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~ 180 (340)
+..||||.+.+. .|..+ +|+|..-..|++..... + ++||.|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~-~CgH~~h~~cf~e~~~~-----~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVL-KCGHYMHSRCFEEMICE-----G-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCcc-CcccchHHHHHHHHhcc-----C-CCCCcccc
Confidence 445999998763 45565 99999988888776543 2 89999977
No 117
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=73.53 E-value=2.5 Score=41.09 Aligned_cols=34 Identities=29% Similarity=0.838 Sum_probs=25.2
Q ss_pred CCCcccHhhHHHHHHhccCC-------CCCcCCCCCCcccc
Q 019461 150 CLHNFCNGCFSEWLRRSQEK-------RSTVLCPHCRAVVQ 183 (340)
Q Consensus 150 CgH~FC~~Cl~~~~~~~~~~-------~~~~~CP~Cr~~~~ 183 (340)
|.-..|.+|+-+|+...++. .+...||+||+.+-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 44556889999999765432 34678999999864
No 118
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=72.19 E-value=4.2 Score=28.84 Aligned_cols=39 Identities=33% Similarity=0.779 Sum_probs=23.9
Q ss_pred CCCCCCCCC------CCcccCCCCCc--ccCccccCCCCCCCCCCCccccccc
Q 019461 252 PCPQCGTEI------NGFHCNQTTVH--LQCQGCGGMMPSRNDSVPQHCLGCD 296 (340)
Q Consensus 252 ~C~~C~~~~------~~~~C~~~~~h--l~C~~C~~~~p~r~~~~~~~C~~C~ 296 (340)
.|.+|...+ ..|.||.|+.- .+|..|.+. ..++.|..|.
T Consensus 9 ~CtSCg~~i~~~~~~~~F~CPnCG~~~I~RC~~CRk~------~~~Y~CP~CG 55 (59)
T PRK14890 9 KCTSCGIEIAPREKAVKFLCPNCGEVIIYRCEKCRKQ------SNPYTCPKCG 55 (59)
T ss_pred cccCCCCcccCCCccCEeeCCCCCCeeEeechhHHhc------CCceECCCCC
Confidence 588886432 34777777644 346666554 4667776664
No 119
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=71.90 E-value=1.5 Score=41.18 Aligned_cols=56 Identities=25% Similarity=0.642 Sum_probs=38.9
Q ss_pred cCCceecccccccc-Cc-cEeCCCCCcccHhhHHHHHHhc-----------------cCCCCCcCCCCCCccccc
Q 019461 129 IEHAKCCICLNIWH-DV-VTVAPCLHNFCNGCFSEWLRRS-----------------QEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 129 ~e~l~C~IC~~~~~-~P-v~l~pCgH~FC~~Cl~~~~~~~-----------------~~~~~~~~CP~Cr~~~~~ 184 (340)
...-.|.||+.=|. .| ++..+|.|.|...|+.+++..- ....-.-.||+||..+..
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 45678999998774 33 6666999999999998876320 000112469999988764
No 120
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=71.40 E-value=2.2 Score=35.48 Aligned_cols=35 Identities=26% Similarity=0.582 Sum_probs=28.1
Q ss_pred CceeccccccccC--ccEeCCCC------CcccHhhHHHHHHh
Q 019461 131 HAKCCICLNIWHD--VVTVAPCL------HNFCNGCFSEWLRR 165 (340)
Q Consensus 131 ~l~C~IC~~~~~~--Pv~l~pCg------H~FC~~Cl~~~~~~ 165 (340)
...|.||++.+.+ -|+.++|+ |-||..|+.+|.+.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence 7899999998876 55555777 67999999999644
No 121
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=71.30 E-value=1.7 Score=40.99 Aligned_cols=45 Identities=29% Similarity=0.461 Sum_probs=30.8
Q ss_pred CceeccccccccCc-cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 131 HAKCCICLNIWHDV-VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 131 ~l~C~IC~~~~~~P-v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
.-.|--|-.-+.-- +++ ||.|.||.+|...-- .+.||.|...+..
T Consensus 90 VHfCd~Cd~PI~IYGRmI-PCkHvFCl~CAr~~~--------dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMI-PCKHVFCLECARSDS--------DKICPLCDDRVQR 135 (389)
T ss_pred eEeecccCCcceeeeccc-ccchhhhhhhhhcCc--------cccCcCcccHHHH
Confidence 35677776644322 455 999999999975311 2589999877765
No 122
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.08 E-value=2.9 Score=41.91 Aligned_cols=56 Identities=25% Similarity=0.698 Sum_probs=39.6
Q ss_pred ccCCceeccccccccC-ccEeCCCCCcccHhhHHHHHHhccCCCCC--cCCC--CCCccccc
Q 019461 128 DIEHAKCCICLNIWHD-VVTVAPCLHNFCNGCFSEWLRRSQEKRST--VLCP--HCRAVVQF 184 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~-Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~--~~CP--~Cr~~~~~ 184 (340)
+....+|.||.+.+.. .+.+ .|+|.||..|...++...-..... +.|| .|++.+..
T Consensus 67 ~~~~~~c~ic~~~~~~~~~~~-~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~ 127 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDGEIIGL-GCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGE 127 (444)
T ss_pred CCccccCCcccCCCcchhhhc-CCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCC
Confidence 3456899999999885 5555 999999999999988765322222 4566 56555543
No 123
>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
Probab=70.93 E-value=2.2 Score=26.87 Aligned_cols=18 Identities=11% Similarity=0.139 Sum_probs=14.1
Q ss_pred CCCccccccccccccccc
Q 019461 287 SVPQHCLGCDRAFCGAYW 304 (340)
Q Consensus 287 ~~~~~C~~C~~~~C~~y~ 304 (340)
.+.+||..|+.++|..+.
T Consensus 10 ~~~~fC~~~~~~iC~~C~ 27 (39)
T cd00021 10 PLSLFCETDRALLCVDCD 27 (39)
T ss_pred ceEEEeCccChhhhhhcC
Confidence 467888888888887775
No 124
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=69.97 E-value=3.7 Score=27.15 Aligned_cols=29 Identities=24% Similarity=0.569 Sum_probs=21.7
Q ss_pred CCCCCCCCCCC--cccCCCCCcccCccccCC
Q 019461 252 PCPQCGTEING--FHCNQTTVHLQCQGCGGM 280 (340)
Q Consensus 252 ~C~~C~~~~~~--~~C~~~~~hl~C~~C~~~ 280 (340)
.|+.|..++.+ |+|..|..+-.|..|...
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~ 32 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAK 32 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCCccchHHhhCc
Confidence 58888776544 788888777778888654
No 125
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=68.63 E-value=6.2 Score=33.76 Aligned_cols=50 Identities=26% Similarity=0.609 Sum_probs=36.7
Q ss_pred cCCceeccccccccCccEeCCCCCc-----ccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 129 IEHAKCCICLNIWHDVVTVAPCLHN-----FCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~Pv~l~pCgH~-----FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
..+-.|=||.+--. +..- ||.-. -..+|+++|...++ ...|+.|++++..
T Consensus 6 ~~~~~CRIC~~~~~-~~~~-PC~CkGs~k~VH~sCL~rWi~~s~----~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYD-VVTN-YCNCKNENKIVHKECLEEWINTSK----NKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCC-CccC-CcccCCCchHHHHHHHHHHHhcCC----CCcccccCCeEEE
Confidence 45678999998754 3333 76642 37899999998653 5789999988764
No 126
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=68.38 E-value=2.7 Score=44.31 Aligned_cols=55 Identities=18% Similarity=0.329 Sum_probs=38.0
Q ss_pred CCceeccccccccCcc---EeCC---CCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 130 EHAKCCICLNIWHDVV---TVAP---CLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 130 e~l~C~IC~~~~~~Pv---~l~p---CgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
+.-+|.+|..-+.+|+ ...| |+|.||..||..|..+-......-.|+.|..-+..
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 5668888888777632 1114 99999999999998765433344567888655544
No 127
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.13 E-value=5.2 Score=37.36 Aligned_cols=47 Identities=28% Similarity=0.606 Sum_probs=36.5
Q ss_pred cCCceeccccccccCccEeCCC----CCcccHhhHHHHHHhccCCCCCcCCCC
Q 019461 129 IEHAKCCICLNIWHDVVTVAPC----LHNFCNGCFSEWLRRSQEKRSTVLCPH 177 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~Pv~l~pC----gH~FC~~Cl~~~~~~~~~~~~~~~CP~ 177 (340)
..-|.|.+|.+.|.|--.+ -| .|.||.-|-.+..++.. ..+.+.||.
T Consensus 266 ~apLcCTLC~ERLEDTHFV-QCPSVp~HKFCFPCSResIK~Qg-~sgevYCPS 316 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFV-QCPSVPSHKFCFPCSRESIKQQG-ASGEVYCPS 316 (352)
T ss_pred CCceeehhhhhhhccCcee-ecCCCcccceecccCHHHHHhhc-CCCceeCCC
Confidence 3569999999999887666 66 59999999998887654 334566774
No 128
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=67.62 E-value=0.52 Score=34.61 Aligned_cols=43 Identities=19% Similarity=0.552 Sum_probs=24.0
Q ss_pred CceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccccc
Q 019461 131 HAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFV 185 (340)
Q Consensus 131 ~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~ 185 (340)
++.||.|...+.-- . +|.+|..|-..+... ..||.|.+++..+
T Consensus 1 e~~CP~C~~~L~~~----~-~~~~C~~C~~~~~~~-------a~CPdC~~~Le~L 43 (70)
T PF07191_consen 1 ENTCPKCQQELEWQ----G-GHYHCEACQKDYKKE-------AFCPDCGQPLEVL 43 (70)
T ss_dssp --B-SSS-SBEEEE----T-TEEEETTT--EEEEE-------EE-TTT-SB-EEE
T ss_pred CCcCCCCCCccEEe----C-CEEECccccccceec-------ccCCCcccHHHHH
Confidence 47899999876421 2 788999998765443 3799999887653
No 129
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.07 E-value=2.9 Score=44.76 Aligned_cols=38 Identities=21% Similarity=0.377 Sum_probs=31.5
Q ss_pred cCCceeccccc-cccCccEeCCCCCcccHhhHHHHHHhc
Q 019461 129 IEHAKCCICLN-IWHDVVTVAPCLHNFCNGCFSEWLRRS 166 (340)
Q Consensus 129 ~e~l~C~IC~~-~~~~Pv~l~pCgH~FC~~Cl~~~~~~~ 166 (340)
+..-.|.+|.. ++..|..+.||||.|.+.|+.+.....
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~~~ 853 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVLSL 853 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccchHHHHHHHHHHHcc
Confidence 45668999998 457898888999999999999877643
No 130
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.74 E-value=13 Score=38.92 Aligned_cols=51 Identities=25% Similarity=0.485 Sum_probs=36.2
Q ss_pred eeccccccccCccEeCCCCC-cccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 133 KCCICLNIWHDVVTVAPCLH-NFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 133 ~C~IC~~~~~~Pv~l~pCgH-~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
.|+||-.-+.=+..- .|+| ..|..|..+.........-...||.||..+..
T Consensus 2 ~c~ic~~s~~~~~~~-s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~ 53 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRG-SCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVET 53 (669)
T ss_pred CcceeecCccccccc-cccccccchhhhhhhhhhcccccccccCcccccceee
Confidence 478887766655555 8999 89999998765543322335678999986654
No 131
>PHA02862 5L protein; Provisional
Probab=64.44 E-value=7.4 Score=32.77 Aligned_cols=46 Identities=20% Similarity=0.467 Sum_probs=34.2
Q ss_pred eeccccccccCccEeCCCCC-----cccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 133 KCCICLNIWHDVVTVAPCLH-----NFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 133 ~C~IC~~~~~~Pv~l~pCgH-----~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
.|=||.+.-.+.+ - ||.- --...|+++|++.+. ...|++|+.++..
T Consensus 4 iCWIC~~~~~e~~-~-PC~C~GS~K~VHq~CL~~WIn~S~----k~~CeLCkteY~I 54 (156)
T PHA02862 4 ICWICNDVCDERN-N-FCGCNEEYKVVHIKCMQLWINYSK----KKECNLCKTKYNI 54 (156)
T ss_pred EEEEecCcCCCCc-c-cccccCcchhHHHHHHHHHHhcCC----CcCccCCCCeEEE
Confidence 6889998765543 3 7764 346899999997653 5789999988764
No 132
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.35 E-value=6.6 Score=35.96 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=32.3
Q ss_pred ccccCCceeccccccccCccEeCCCCCcccHhhHHHHHH
Q 019461 126 SIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLR 164 (340)
Q Consensus 126 ~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~ 164 (340)
....+.-.|++|+..+++||.. |=||.||+.||.++.-
T Consensus 38 DsiK~FdcCsLtLqPc~dPvit-~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 38 DSIKPFDCCSLTLQPCRDPVIT-PDGYLFDREAILEYIL 75 (303)
T ss_pred cccCCcceeeeecccccCCccC-CCCeeeeHHHHHHHHH
Confidence 3344667899999999999999 9999999999988653
No 133
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=63.49 E-value=5.4 Score=37.11 Aligned_cols=30 Identities=23% Similarity=0.752 Sum_probs=24.3
Q ss_pred cccCccccCCCCCCCC----------CCCccccccccccc
Q 019461 271 HLQCQGCGGMMPSRND----------SVPQHCLGCDRAFC 300 (340)
Q Consensus 271 hl~C~~C~~~~p~r~~----------~~~~~C~~C~~~~C 300 (340)
...|..|.++|.||-. ..++.|..|.+.|=
T Consensus 215 PF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFs 254 (279)
T KOG2462|consen 215 PFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFA 254 (279)
T ss_pred CccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHH
Confidence 3348899999998775 67899999999884
No 134
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.11 E-value=2.6 Score=37.90 Aligned_cols=40 Identities=30% Similarity=0.631 Sum_probs=30.0
Q ss_pred eccccccccCccEeCCCCC-cccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 134 CCICLNIWHDVVTVAPCLH-NFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 134 C~IC~~~~~~Pv~l~pCgH-~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
|-.|.+-=.. |.++||.| .+|..|-.. ...||.|+.....
T Consensus 161 Cr~C~~~~~~-VlllPCrHl~lC~~C~~~----------~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGEREAT-VLLLPCRHLCLCGICDES----------LRICPICRSPKTS 201 (207)
T ss_pred ceecCcCCce-EEeecccceEeccccccc----------CccCCCCcChhhc
Confidence 9999987777 45559998 789999543 2479999876543
No 135
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=62.78 E-value=7.4 Score=26.14 Aligned_cols=40 Identities=30% Similarity=0.752 Sum_probs=23.7
Q ss_pred eccccccccC--ccEeCCCCC-----cccHhhHHHHHHhccCCCCCcCCCCC
Q 019461 134 CCICLNIWHD--VVTVAPCLH-----NFCNGCFSEWLRRSQEKRSTVLCPHC 178 (340)
Q Consensus 134 C~IC~~~~~~--Pv~l~pCgH-----~FC~~Cl~~~~~~~~~~~~~~~CP~C 178 (340)
|-||++.-.+ |... ||.- ....+||.+|+.... ...|++|
T Consensus 1 CrIC~~~~~~~~~li~-pC~C~Gs~~~vH~~CL~~W~~~~~----~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLIS-PCRCKGSMKYVHRSCLERWIRESG----NRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE--SSS-SSCCGSEECCHHHHHHHHHT-----SB-TTT
T ss_pred CeEeCCcCCCCCceec-ccccCCCcchhHHHHHHHHHHhcC----CCcCCCC
Confidence 5577765432 4555 8864 336789999998753 3578877
No 136
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=61.78 E-value=2.3 Score=28.76 Aligned_cols=30 Identities=33% Similarity=0.788 Sum_probs=20.6
Q ss_pred CCCC-CcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461 148 APCL-HNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183 (340)
Q Consensus 148 ~pCg-H~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 183 (340)
..|. |..|..|+...+..+. .||.|..++.
T Consensus 16 i~C~dHYLCl~CLt~ml~~s~------~C~iC~~~LP 46 (50)
T PF03854_consen 16 IKCSDHYLCLNCLTLMLSRSD------RCPICGKPLP 46 (50)
T ss_dssp EE-SS-EEEHHHHHHT-SSSS------EETTTTEE--
T ss_pred eeecchhHHHHHHHHHhcccc------CCCcccCcCc
Confidence 3676 8899999998887654 8999987764
No 137
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=61.74 E-value=2.4 Score=27.40 Aligned_cols=29 Identities=24% Similarity=0.531 Sum_probs=23.7
Q ss_pred CCCCCCCCCCCCcccCCCCCcccCccccCC
Q 019461 251 LPCPQCGTEINGFHCNQTTVHLQCQGCGGM 280 (340)
Q Consensus 251 ~~C~~C~~~~~~~~C~~~~~hl~C~~C~~~ 280 (340)
..|..|......++|.+|...+ |..|...
T Consensus 4 ~~C~~H~~~~~~~~C~~C~~~~-C~~C~~~ 32 (42)
T PF00643_consen 4 PKCPEHPEEPLSLFCEDCNEPL-CSECTVS 32 (42)
T ss_dssp SB-SSTTTSBEEEEETTTTEEE-EHHHHHT
T ss_pred ccCccCCccceEEEecCCCCcc-CccCCCC
Confidence 3699998887889999999988 9998755
No 138
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=57.86 E-value=6.8 Score=22.24 Aligned_cols=17 Identities=41% Similarity=1.079 Sum_probs=7.6
Q ss_pred CCCCCCCC--CCcccCCCC
Q 019461 253 CPQCGTEI--NGFHCNQTT 269 (340)
Q Consensus 253 C~~C~~~~--~~~~C~~~~ 269 (340)
|+.|...+ ..-+|+.||
T Consensus 2 Cp~CG~~~~~~~~fC~~CG 20 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCG 20 (23)
T ss_pred CcccCCCCCCcCcchhhhC
Confidence 55665432 223444444
No 139
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=57.81 E-value=4.4 Score=39.57 Aligned_cols=123 Identities=18% Similarity=0.297 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCeEEEEec-cCCceEeccEecCCCceeeccCCCeeccCCCCcceec-cccccccccccccchhhhcccc
Q 019461 52 EWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQNEEVVDIKCGTEIIPGPDREVYLN-FRFKVVPVQESSNQQLEISIDI 129 (340)
Q Consensus 52 ~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~~~~~~l~~gd~I~lg~~~~~~~~-y~f~i~s~~~~~~~~~~~~~~~ 129 (340)
.|-+|...++- |.|++. |. -.-|+.+.. +.-.|.+|..|.+....-.+-. ......+... .-+.+...+..
T Consensus 203 ~WREvSV~G~v--y~lRetRSa---~~~G~~v~~-E~NiL~DGtLIDLCGaTLlWRsa~gL~~~Pt~~-~Le~~~~~lNa 275 (416)
T PF04710_consen 203 VWREVSVCGNV--YSLRETRSA---QQRGKLVEN-ESNILQDGTLIDLCGATLLWRSAEGLAHSPTKK-HLEALRQELNA 275 (416)
T ss_dssp -EEEEETTSEE--EE--SSTT----SS---EETT-EESB--TT-EEE-SSSEEEEEEHHHHHHS-CCH-HHHHHCHHSS-
T ss_pred eeEEEEeccce--eeecccccc---ccCCccccc-CCcccccccChhhceeeeEecchhhhhcCCcHH-HHHHHHHHHhh
Confidence 45555544333 667765 32 122333332 2447899988887753211110 0000011000 11112223333
Q ss_pred CCceeccccccc-------------cCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 130 EHAKCCICLNIW-------------HDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 130 e~l~C~IC~~~~-------------~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
-...||+=+..| +.|.+-+.|||.+-.. .|-...........||.||+.-..
T Consensus 276 ~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~~ 340 (416)
T PF04710_consen 276 GRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGPY 340 (416)
T ss_dssp --------------------------------------------------------------------
T ss_pred cCCCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccccccccccCCCccccCCc
Confidence 456777766544 3454444899988653 454433222235789999876544
No 140
>smart00336 BBOX B-Box-type zinc finger.
Probab=56.62 E-value=7.3 Score=24.78 Aligned_cols=17 Identities=18% Similarity=0.433 Sum_probs=10.8
Q ss_pred CCccccccccccccccc
Q 019461 288 VPQHCLGCDRAFCGAYW 304 (340)
Q Consensus 288 ~~~~C~~C~~~~C~~y~ 304 (340)
+.+||..|..++|..+.
T Consensus 14 ~~~~C~~c~~~iC~~C~ 30 (42)
T smart00336 14 AEFFCEECGALLCRTCD 30 (42)
T ss_pred eEEECCCCCcccccccC
Confidence 56666666666666554
No 141
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=56.59 E-value=7.7 Score=36.79 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=36.4
Q ss_pred CCceecccccccc---CccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCc
Q 019461 130 EHAKCCICLNIWH---DVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRA 180 (340)
Q Consensus 130 e~l~C~IC~~~~~---~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~ 180 (340)
.-+.||+=++.-. -|+++ .|||..-+.-+....+++. -.+.||.|-.
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml-~CgHVIskeal~~LS~nG~---~~FKCPYCP~ 384 (396)
T COG5109 335 SLFICPVLKELCTDENPPVML-ECGHVISKEALSVLSQNGV---LSFKCPYCPE 384 (396)
T ss_pred ceeeccccHhhhcccCCCeee-eccceeeHHHHHHHhhcCc---EEeeCCCCCc
Confidence 4579999887764 47887 9999999998887766543 4789999954
No 142
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=56.09 E-value=12 Score=31.39 Aligned_cols=23 Identities=35% Similarity=0.920 Sum_probs=14.9
Q ss_pred CCCCCCCCCCCCCC-CCcccCCCC
Q 019461 247 DSIELPCPQCGTEI-NGFHCNQTT 269 (340)
Q Consensus 247 ~~~~~~C~~C~~~~-~~~~C~~~~ 269 (340)
.....+|..|+.++ .+.+|+.|.
T Consensus 78 ~nl~~~CE~CG~~I~~Gr~C~~C~ 101 (137)
T TIGR03826 78 PNLGYPCERCGTSIREGRLCDSCA 101 (137)
T ss_pred CCCcCcccccCCcCCCCCccHHHH
Confidence 34557899998876 445555443
No 143
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=55.88 E-value=6.9 Score=26.55 Aligned_cols=29 Identities=24% Similarity=0.639 Sum_probs=23.5
Q ss_pred CCCCCC-CCCCC--cccCCCCCcccCccccCC
Q 019461 252 PCPQCG-TEING--FHCNQTTVHLQCQGCGGM 280 (340)
Q Consensus 252 ~C~~C~-~~~~~--~~C~~~~~hl~C~~C~~~ 280 (340)
.|..|. .++.+ |+|..|..+-.|..|+..
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~ 33 (49)
T cd02338 2 SCDGCGKSNFTGRRYKCLICYDYDLCADCYDS 33 (49)
T ss_pred CCCCCcCCCcEEeeEEeCCCCCCccchhHHhC
Confidence 588997 56645 899999988889999765
No 144
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=55.19 E-value=3.5 Score=28.44 Aligned_cols=40 Identities=20% Similarity=0.472 Sum_probs=22.9
Q ss_pred CCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcc
Q 019461 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAV 181 (340)
Q Consensus 130 e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~ 181 (340)
+.+.||.|.+.|. -..| ..-|....... ...+.||+|...
T Consensus 1 ~~f~CP~C~~~~~-~~~L-------~~H~~~~H~~~----~~~v~CPiC~~~ 40 (54)
T PF05605_consen 1 DSFTCPYCGKGFS-ESSL-------VEHCEDEHRSE----SKNVVCPICSSR 40 (54)
T ss_pred CCcCCCCCCCccC-HHHH-------HHHHHhHCcCC----CCCccCCCchhh
Confidence 4688999999443 3233 23343332222 235789999763
No 145
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=53.68 E-value=9.1 Score=22.25 Aligned_cols=20 Identities=35% Similarity=0.903 Sum_probs=11.1
Q ss_pred CCCCCCCCCC--CCcccCCCCC
Q 019461 251 LPCPQCGTEI--NGFHCNQTTV 270 (340)
Q Consensus 251 ~~C~~C~~~~--~~~~C~~~~~ 270 (340)
.+|+.|...+ ...+|+.||.
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~CG~ 24 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNCGA 24 (26)
T ss_pred CCCcccCCcCCcccccChhhCC
Confidence 3677786532 3345665554
No 146
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=52.37 E-value=10 Score=25.25 Aligned_cols=29 Identities=28% Similarity=0.608 Sum_probs=21.6
Q ss_pred CCCCCCCCCCC--cccCCCCCcccCccccCC
Q 019461 252 PCPQCGTEING--FHCNQTTVHLQCQGCGGM 280 (340)
Q Consensus 252 ~C~~C~~~~~~--~~C~~~~~hl~C~~C~~~ 280 (340)
.|..|..++.+ |+|.+|..+-.|..|...
T Consensus 2 ~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~ 32 (46)
T cd02249 2 SCDGCLKPIVGVRYHCLVCEDFDLCSSCYAK 32 (46)
T ss_pred CCcCCCCCCcCCEEECCCCCCCcCHHHHHCc
Confidence 48888765544 788888877778888765
No 147
>PRK04023 DNA polymerase II large subunit; Validated
Probab=52.12 E-value=15 Score=40.18 Aligned_cols=30 Identities=33% Similarity=0.736 Sum_probs=21.7
Q ss_pred CCCCCCCCCCCCCCcccCCCCCc----ccCcccc
Q 019461 249 IELPCPQCGTEINGFHCNQTTVH----LQCQGCG 278 (340)
Q Consensus 249 ~~~~C~~C~~~~~~~~C~~~~~h----l~C~~C~ 278 (340)
....|++|......++||.||.+ ..|..|.
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG 658 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCG 658 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCcccc
Confidence 34589999888778899999865 3355553
No 148
>PF05458 Siva: Cd27 binding protein (Siva); InterPro: IPR022773 Siva binds to the CD27 cytoplasmic tail. It has a DD homology region, a box-B-like ring finger, and a zinc finger-like domain. Overexpression of Siva in various cell lines induces apoptosis, suggesting an important role for Siva in the CD27-transduced apoptotic pathway []. Siva-1 binds to and inhibits BCL-X(L)-mediated protection against UV radiation-induced apoptosis. Indeed, the unique amphipathic helical region (SAH) present in Siva-1 is required for its binding to BCL-X(L) and sensitising cells to UV radiation. Natural complexes of Siva-1/BCL-X(L) are detected in HUT78 and murine thymocyte, suggesting a potential role for Siva-1 in regulating T cell homeostasis []. This family contains both Siva-1 and the shorter Siva-2 lacking the sequence coded by exon 2. It has been suggested that Siva-2 could regulate the function of Siva-1 [].
Probab=51.60 E-value=12 Score=32.72 Aligned_cols=44 Identities=25% Similarity=0.585 Sum_probs=32.0
Q ss_pred CCCCCCCCCCC-CCCcccCCCCCcccCccccCCCCCCCCCCCccccccccccccccc
Q 019461 249 IELPCPQCGTE-INGFHCNQTTVHLQCQGCGGMMPSRNDSVPQHCLGCDRAFCGAYW 304 (340)
Q Consensus 249 ~~~~C~~C~~~-~~~~~C~~~~~hl~C~~C~~~~p~r~~~~~~~C~~C~~~~C~~y~ 304 (340)
....|..|... .....|..|...+ |..|... |..|...||.++-
T Consensus 110 ~~~aCs~C~r~~~~~~~C~~Cdr~l-C~~C~~~-----------C~~C~~~~Cs~Cs 154 (175)
T PF05458_consen 110 ASRACSVCQRTQRIKSVCSQCDRAL-CESCIRS-----------CSSCSEVFCSLCS 154 (175)
T ss_pred cCccCcCCcCCCCCCccccccCcHH-HHHHHhh-----------hhchhhhhhcCcc
Confidence 44569999643 4557888887888 9888754 7777777777764
No 149
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=51.53 E-value=12 Score=25.05 Aligned_cols=30 Identities=27% Similarity=0.624 Sum_probs=23.0
Q ss_pred CCCCCCCC-CCC--CcccCCCCCcccCccccCC
Q 019461 251 LPCPQCGT-EIN--GFHCNQTTVHLQCQGCGGM 280 (340)
Q Consensus 251 ~~C~~C~~-~~~--~~~C~~~~~hl~C~~C~~~ 280 (340)
+.|+.|.. ++. -|.|..|..+-.|..|...
T Consensus 1 V~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~ 33 (45)
T cd02344 1 VTCDGCQMFPINGPRFKCRNCDDFDFCENCFKT 33 (45)
T ss_pred CCCCCCCCCCCccCeEECCCCCCccchHHhhCC
Confidence 35888864 554 4889999988889999765
No 150
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=51.00 E-value=9.4 Score=27.65 Aligned_cols=14 Identities=43% Similarity=1.353 Sum_probs=10.2
Q ss_pred cccHhhHHHHHHhc
Q 019461 153 NFCNGCFSEWLRRS 166 (340)
Q Consensus 153 ~FC~~Cl~~~~~~~ 166 (340)
.||+.||++|....
T Consensus 11 gFCRNCLskWy~~a 24 (68)
T PF06844_consen 11 GFCRNCLSKWYREA 24 (68)
T ss_dssp S--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 59999999999754
No 151
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.47 E-value=9.7 Score=35.73 Aligned_cols=35 Identities=26% Similarity=0.725 Sum_probs=24.8
Q ss_pred CCCcccHhhHHHHHHhccC-------CCCCcCCCCCCccccc
Q 019461 150 CLHNFCNGCFSEWLRRSQE-------KRSTVLCPHCRAVVQF 184 (340)
Q Consensus 150 CgH~FC~~Cl~~~~~~~~~-------~~~~~~CP~Cr~~~~~ 184 (340)
|..-.|.+|+-+|+...+. ..+.-.||.||+.+-.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 4556788999999865432 2345789999998654
No 152
>PRK01777 hypothetical protein; Validated
Probab=49.98 E-value=14 Score=28.85 Aligned_cols=30 Identities=7% Similarity=-0.036 Sum_probs=24.7
Q ss_pred eccCCceEeccEecCCCceeeccCCCeeccCC
Q 019461 69 NKSSNAILVDDTMVQNEEVVDIKCGTEIIPGP 100 (340)
Q Consensus 69 D~StNgt~vng~~i~~~~~~~l~~gd~I~lg~ 100 (340)
|++++-..|||+.+... ..|++||+|.+-+
T Consensus 46 ~~~~~~vgI~Gk~v~~d--~~L~dGDRVeIyr 75 (95)
T PRK01777 46 DLAKNKVGIYSRPAKLT--DVLRDGDRVEIYR 75 (95)
T ss_pred ccccceEEEeCeECCCC--CcCCCCCEEEEec
Confidence 66778889999999864 5899999998654
No 153
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=49.51 E-value=13 Score=24.90 Aligned_cols=29 Identities=21% Similarity=0.435 Sum_probs=21.8
Q ss_pred CCCCCC-CCC--CCcccCCCCCcccCccccCC
Q 019461 252 PCPQCG-TEI--NGFHCNQTTVHLQCQGCGGM 280 (340)
Q Consensus 252 ~C~~C~-~~~--~~~~C~~~~~hl~C~~C~~~ 280 (340)
.|+.|. .++ ..|.|..|..+-.|..|...
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~ 33 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYHG 33 (45)
T ss_pred CCCCCCCCCcccCeEECCCCCCccchHHHhCC
Confidence 588887 454 34889999888779998764
No 154
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=49.26 E-value=12 Score=21.65 Aligned_cols=8 Identities=25% Similarity=0.584 Sum_probs=4.2
Q ss_pred CcccCCCC
Q 019461 262 GFHCNQTT 269 (340)
Q Consensus 262 ~~~C~~~~ 269 (340)
.|.||.||
T Consensus 16 ~f~CPnCG 23 (24)
T PF07754_consen 16 PFPCPNCG 23 (24)
T ss_pred eEeCCCCC
Confidence 45555554
No 155
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=48.59 E-value=3.1 Score=43.72 Aligned_cols=54 Identities=22% Similarity=0.474 Sum_probs=36.0
Q ss_pred CCCCCCCCCCCCCcccCCCCCcccCccccCCCCCCCCCCCccccccccccccccccCCccCCCCCccc
Q 019461 250 ELPCPQCGTEINGFHCNQTTVHLQCQGCGGMMPSRNDSVPQHCLGCDRAFCGAYWHAQMVARSDSQPM 317 (340)
Q Consensus 250 ~~~C~~C~~~~~~~~C~~~~~hl~C~~C~~~~p~r~~~~~~~C~~C~~~~C~~y~~~~~~~~~~~~~~ 317 (340)
-+.|+.|.+.+.+..=+.| .|++|..|.+.+-. -..-+|..|+.+| |++|+++|
T Consensus 643 ~LkCs~Cn~R~Kd~vI~kC-~H~FC~~Cvq~r~e---tRqRKCP~Cn~aF----------ganDv~~I 696 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVITKC-GHVFCEECVQTRYE---TRQRKCPKCNAAF----------GANDVHRI 696 (698)
T ss_pred ceeCCCccCchhhHHHHhc-chHHHHHHHHHHHH---HhcCCCCCCCCCC----------Cccccccc
Confidence 3689999865544333333 78999999877322 2345899998876 56676665
No 156
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=48.20 E-value=14 Score=24.37 Aligned_cols=30 Identities=30% Similarity=0.630 Sum_probs=22.8
Q ss_pred CCCCCCCCCC--CCcccCCCCCcccCccccCC
Q 019461 251 LPCPQCGTEI--NGFHCNQTTVHLQCQGCGGM 280 (340)
Q Consensus 251 ~~C~~C~~~~--~~~~C~~~~~hl~C~~C~~~ 280 (340)
+.|..|..++ ..|.|..|..+-.|..|...
T Consensus 5 ~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~ 36 (44)
T smart00291 5 YSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAK 36 (44)
T ss_pred cCCCCCCCCCcCCEEECCCCCCccchHHHHhC
Confidence 4688997755 34889998888889999654
No 157
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=46.70 E-value=14 Score=36.53 Aligned_cols=35 Identities=17% Similarity=0.401 Sum_probs=16.7
Q ss_pred CCceeccccccccCccEeCCCCCcccHhhHHHHHH
Q 019461 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLR 164 (340)
Q Consensus 130 e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~ 164 (340)
+-++|..|..-|.-.-.-.-=+-.||..|....+.
T Consensus 301 ~CFtC~~C~r~L~Gq~FY~v~~k~~CE~cyq~tle 335 (468)
T KOG1701|consen 301 QCFTCRTCRRQLAGQSFYQVDGKPYCEGCYQDTLE 335 (468)
T ss_pred cceehHhhhhhhccccccccCCcccchHHHHHHHH
Confidence 44566666655432212112334456666665554
No 158
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.41 E-value=17 Score=26.87 Aligned_cols=26 Identities=31% Similarity=0.719 Sum_probs=20.5
Q ss_pred CCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 151 LHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 151 gH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
-|+||..|.+..+. ..||.|...+..
T Consensus 28 EcTFCadCae~~l~--------g~CPnCGGelv~ 53 (84)
T COG3813 28 ECTFCADCAENRLH--------GLCPNCGGELVA 53 (84)
T ss_pred eeehhHhHHHHhhc--------CcCCCCCchhhc
Confidence 47899999987653 389999887655
No 159
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=43.95 E-value=17 Score=24.59 Aligned_cols=29 Identities=24% Similarity=0.626 Sum_probs=22.0
Q ss_pred CCCCCCCCCCC---cccCCCCCcccCccccCC
Q 019461 252 PCPQCGTEING---FHCNQTTVHLQCQGCGGM 280 (340)
Q Consensus 252 ~C~~C~~~~~~---~~C~~~~~hl~C~~C~~~ 280 (340)
.|..|.....+ |.|.+|..+-.|..|...
T Consensus 2 ~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~ 33 (49)
T cd02335 2 HCDYCSKDITGTIRIKCAECPDFDLCLECFSA 33 (49)
T ss_pred CCCCcCCCCCCCcEEECCCCCCcchhHHhhhC
Confidence 48888764433 889999888879998765
No 160
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=43.62 E-value=12 Score=21.98 Aligned_cols=8 Identities=25% Similarity=0.301 Sum_probs=3.9
Q ss_pred eccccccc
Q 019461 134 CCICLNIW 141 (340)
Q Consensus 134 C~IC~~~~ 141 (340)
||-|....
T Consensus 3 CP~C~~~V 10 (26)
T PF10571_consen 3 CPECGAEV 10 (26)
T ss_pred CCCCcCCc
Confidence 55555443
No 161
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=42.75 E-value=15 Score=24.95 Aligned_cols=29 Identities=31% Similarity=0.753 Sum_probs=23.2
Q ss_pred CCCCCCC-CCCC--cccCCCCCcccCccccCC
Q 019461 252 PCPQCGT-EING--FHCNQTTVHLQCQGCGGM 280 (340)
Q Consensus 252 ~C~~C~~-~~~~--~~C~~~~~hl~C~~C~~~ 280 (340)
.|..|.. ++.+ |+|..|..+-.|..|...
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~ 33 (49)
T cd02345 2 SCSACRKQDISGIRFPCQVCRDYSLCLGCYTK 33 (49)
T ss_pred cCCCCCCCCceEeeEECCCCCCcCchHHHHhC
Confidence 5888876 6656 889999988889999764
No 162
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=42.69 E-value=16 Score=24.23 Aligned_cols=31 Identities=26% Similarity=0.510 Sum_probs=23.8
Q ss_pred CCCCCCC-CCCC--cccCCCCCcccCccccCCCC
Q 019461 252 PCPQCGT-EING--FHCNQTTVHLQCQGCGGMMP 282 (340)
Q Consensus 252 ~C~~C~~-~~~~--~~C~~~~~hl~C~~C~~~~p 282 (340)
.|+.|.. ++.+ |.|..|..+=.|..|...+.
T Consensus 2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~~~ 35 (43)
T cd02342 2 QCDGCGVLPITGPRYKSKVKEDYDLCTICFSRMG 35 (43)
T ss_pred CCCCCCCCcccccceEeCCCCCCccHHHHhhhhc
Confidence 5888964 5544 88999998877999987654
No 163
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=42.29 E-value=18 Score=24.51 Aligned_cols=29 Identities=34% Similarity=0.816 Sum_probs=21.4
Q ss_pred CCCCCCC-CCCC--cccCCCC--CcccCccccCC
Q 019461 252 PCPQCGT-EING--FHCNQTT--VHLQCQGCGGM 280 (340)
Q Consensus 252 ~C~~C~~-~~~~--~~C~~~~--~hl~C~~C~~~ 280 (340)
.|..|.. ++.+ |.|..|. .+-.|+.|...
T Consensus 2 ~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~ 35 (48)
T cd02341 2 KCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVK 35 (48)
T ss_pred CCCCCCCCccccceEECCCCCCCCCccCHHHHhC
Confidence 4888875 6655 8888888 67778888654
No 164
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=42.24 E-value=13 Score=26.38 Aligned_cols=39 Identities=31% Similarity=0.786 Sum_probs=20.1
Q ss_pred CCCCCCCCC------CCcccCCCCC--cccCccccCCCCCCCCCCCccccccc
Q 019461 252 PCPQCGTEI------NGFHCNQTTV--HLQCQGCGGMMPSRNDSVPQHCLGCD 296 (340)
Q Consensus 252 ~C~~C~~~~------~~~~C~~~~~--hl~C~~C~~~~p~r~~~~~~~C~~C~ 296 (340)
.|.+|...+ ..|.||.||+ -.+|..|.+. ..++.|.-|.
T Consensus 11 ~CtSCg~~i~p~e~~v~F~CPnCGe~~I~Rc~~CRk~------g~~Y~Cp~CG 57 (61)
T COG2888 11 VCTSCGREIAPGETAVKFPCPNCGEVEIYRCAKCRKL------GNPYRCPKCG 57 (61)
T ss_pred eeccCCCEeccCCceeEeeCCCCCceeeehhhhHHHc------CCceECCCcC
Confidence 577775432 3356666652 1225544433 4666666554
No 165
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=41.81 E-value=28 Score=27.68 Aligned_cols=32 Identities=25% Similarity=0.707 Sum_probs=22.1
Q ss_pred CCcccHhhHHHHHHhcc---CCCCCcCCCCCCccc
Q 019461 151 LHNFCNGCFSEWLRRSQ---EKRSTVLCPHCRAVV 182 (340)
Q Consensus 151 gH~FC~~Cl~~~~~~~~---~~~~~~~CP~Cr~~~ 182 (340)
.-.||..||........ .......||.||..-
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiC 71 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGIC 71 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCee
Confidence 66799999987765421 123457899998743
No 166
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=41.77 E-value=21 Score=26.93 Aligned_cols=28 Identities=25% Similarity=0.191 Sum_probs=19.5
Q ss_pred ceEeccEecCCCceeeccCCCeeccCCC
Q 019461 74 AILVDDTMVQNEEVVDIKCGTEIIPGPD 101 (340)
Q Consensus 74 gt~vng~~i~~~~~~~l~~gd~I~lg~~ 101 (340)
-.+|||+.+.......|++||+|.+-+.
T Consensus 57 ~v~vN~~~v~~~~~~~l~dgdev~i~Pp 84 (88)
T TIGR01687 57 IILVNGRNVDWGLGTELKDGDVVAIFPP 84 (88)
T ss_pred EEEECCEecCccCCCCCCCCCEEEEeCC
Confidence 3566777665543367999999987663
No 167
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=41.39 E-value=27 Score=32.60 Aligned_cols=26 Identities=31% Similarity=0.792 Sum_probs=18.1
Q ss_pred CccccCCCC----------CCCCCCCcccccccccc
Q 019461 274 CQGCGGMMP----------SRNDSVPQHCLGCDRAF 299 (340)
Q Consensus 274 C~~C~~~~p----------~r~~~~~~~C~~C~~~~ 299 (340)
|..|+..|- .+....||.|..|.++|
T Consensus 190 C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAF 225 (279)
T KOG2462|consen 190 CGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAF 225 (279)
T ss_pred cccccccccchHHhhcccccccCCCCccCCcccchh
Confidence 777777633 23337888888888887
No 168
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.11 E-value=25 Score=32.46 Aligned_cols=56 Identities=29% Similarity=0.578 Sum_probs=36.9
Q ss_pred cCCceeccccccccCccE---eCCCC-----CcccHhhHHHHHHhccC--CCCCcCCCCCCccccc
Q 019461 129 IEHAKCCICLNIWHDVVT---VAPCL-----HNFCNGCFSEWLRRSQE--KRSTVLCPHCRAVVQF 184 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~Pv~---l~pCg-----H~FC~~Cl~~~~~~~~~--~~~~~~CP~Cr~~~~~ 184 (340)
+.+-.|=||+.-=.|-.. +-||. |=...+|+.+|...++. ......||+|+++...
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 456788999875433211 11554 33468999999986643 2336789999988765
No 169
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=40.90 E-value=23 Score=23.31 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=18.4
Q ss_pred cCCceEeccEecCCCceeeccCCCee
Q 019461 71 SSNAILVDDTMVQNEEVVDIKCGTEI 96 (340)
Q Consensus 71 StNgt~vng~~i~~~~~~~l~~gd~I 96 (340)
..++.+|||+.+... ...+..||+|
T Consensus 24 ~~g~V~VNg~~v~~~-~~~v~~~d~I 48 (48)
T PF01479_consen 24 KQGRVKVNGKVVKDP-SYIVKPGDVI 48 (48)
T ss_dssp HTTTEEETTEEESST-TSBESTTEEE
T ss_pred CCCEEEECCEEEcCC-CCCCCCcCCC
Confidence 357889999999954 3556778765
No 170
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=40.08 E-value=21 Score=27.75 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=20.9
Q ss_pred eEeccEecC--CCceeeccCCCeeccCCC
Q 019461 75 ILVDDTMVQ--NEEVVDIKCGTEIIPGPD 101 (340)
Q Consensus 75 t~vng~~i~--~~~~~~l~~gd~I~lg~~ 101 (340)
.+|||..+. .+....|++||+|.+-+.
T Consensus 62 VlvN~~di~~l~g~~t~L~dgD~v~i~P~ 90 (94)
T cd01764 62 VLINDTDWELLGEEDYILEDGDHVVFIST 90 (94)
T ss_pred EEECCccccccCCcccCCCCcCEEEEECC
Confidence 478888875 356788999999988763
No 171
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=39.30 E-value=16 Score=21.07 Aligned_cols=11 Identities=36% Similarity=0.809 Sum_probs=7.5
Q ss_pred Ccccccccccc
Q 019461 289 PQHCLGCDRAF 299 (340)
Q Consensus 289 ~~~C~~C~~~~ 299 (340)
.+||..|++.|
T Consensus 1 q~~C~~C~k~f 11 (27)
T PF12171_consen 1 QFYCDACDKYF 11 (27)
T ss_dssp -CBBTTTTBBB
T ss_pred CCCcccCCCCc
Confidence 36788887765
No 172
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=38.82 E-value=18 Score=24.56 Aligned_cols=29 Identities=24% Similarity=0.435 Sum_probs=21.6
Q ss_pred CCCCCCCCC--CCcccCCCCCcccCccccCC
Q 019461 252 PCPQCGTEI--NGFHCNQTTVHLQCQGCGGM 280 (340)
Q Consensus 252 ~C~~C~~~~--~~~~C~~~~~hl~C~~C~~~ 280 (340)
.|+.|.... .-|+|..|..+-.|+.|+..
T Consensus 2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~ 32 (48)
T cd02343 2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCFLG 32 (48)
T ss_pred CCCCCCCcCCCceEECCCCCCchhHHHHHhC
Confidence 478886533 34889999999889999654
No 173
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=38.00 E-value=9 Score=26.40 Aligned_cols=28 Identities=32% Similarity=0.783 Sum_probs=10.1
Q ss_pred CccccCCCCCCCC----CCCcccccccccccc
Q 019461 274 CQGCGGMMPSRND----SVPQHCLGCDRAFCG 301 (340)
Q Consensus 274 C~~C~~~~p~r~~----~~~~~C~~C~~~~C~ 301 (340)
|-+|...+|.... ...+.|..|+..||.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~ 33 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCI 33 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-H
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCcccc
Confidence 4455555554432 244566666666653
No 174
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=37.97 E-value=21 Score=24.32 Aligned_cols=29 Identities=24% Similarity=0.446 Sum_probs=22.2
Q ss_pred CCCCCCC-CCC--CcccCCCCCcccCccccCC
Q 019461 252 PCPQCGT-EIN--GFHCNQTTVHLQCQGCGGM 280 (340)
Q Consensus 252 ~C~~C~~-~~~--~~~C~~~~~hl~C~~C~~~ 280 (340)
.|+.|.. ++. -|.|..|..+-.|..|...
T Consensus 2 ~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~ 33 (49)
T cd02334 2 KCNICKEFPITGFRYRCLKCFNYDLCQSCFFS 33 (49)
T ss_pred CCCCCCCCCceeeeEECCCCCCcCchHHHHhC
Confidence 5888874 453 3889999988889999754
No 175
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=37.30 E-value=31 Score=24.98 Aligned_cols=41 Identities=20% Similarity=0.449 Sum_probs=15.9
Q ss_pred CCCCCCCCCCCcccCCCCCcccCccccCCCCCCCCCCCccccccccc
Q 019461 252 PCPQCGTEINGFHCNQTTVHLQCQGCGGMMPSRNDSVPQHCLGCDRA 298 (340)
Q Consensus 252 ~C~~C~~~~~~~~C~~~~~hl~C~~C~~~~p~r~~~~~~~C~~C~~~ 298 (340)
.|+-|..-...-.|...-+|..|..|... .+...|.+|..|
T Consensus 9 rCs~C~~~l~~pv~l~~CeH~fCs~Ci~~------~~~~~CPvC~~P 49 (65)
T PF14835_consen 9 RCSICFDILKEPVCLGGCEHIFCSSCIRD------CIGSECPVCHTP 49 (65)
T ss_dssp S-SSS-S--SS-B---SSS--B-TTTGGG------GTTTB-SSS--B
T ss_pred CCcHHHHHhcCCceeccCccHHHHHHhHH------hcCCCCCCcCCh
Confidence 47777655555556555578878888644 122347777665
No 176
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=36.87 E-value=32 Score=36.25 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=46.2
Q ss_pred CCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHH
Q 019461 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQ 200 (340)
Q Consensus 130 e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~ 200 (340)
-.|.|+|.+..+.-|..-..|.|.-|.+=+ |+-+.+...+.+.||+|.+.... +.....+.+++.....
T Consensus 305 vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~--~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~~~~~ 375 (636)
T KOG2169|consen 305 VSLNCPLSKMRMSLPARGHTCKHLQCFDAL--SYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQSCQA 375 (636)
T ss_pred eEecCCcccceeecCCcccccccceecchh--hhHHhccCCCeeeCccCCccccccchhhhHHHHHHHhhccC
Confidence 468999999877665554466665555433 33344456778999999887765 6666666666655443
No 177
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=36.37 E-value=25 Score=24.66 Aligned_cols=25 Identities=28% Similarity=0.735 Sum_probs=19.6
Q ss_pred CcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 152 HNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 152 H~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
.+||..|.+..+. ..||.|...+..
T Consensus 29 CTFC~~C~e~~l~--------~~CPNCgGelv~ 53 (57)
T PF06906_consen 29 CTFCADCAETMLN--------GVCPNCGGELVR 53 (57)
T ss_pred CcccHHHHHHHhc--------CcCcCCCCcccc
Confidence 4899999988763 379999876653
No 178
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.01 E-value=11 Score=35.42 Aligned_cols=44 Identities=25% Similarity=0.626 Sum_probs=35.6
Q ss_pred ceecccccccc------CccEeCC--------CCCcccHhhHHHHHHhccCCCCCcCCCCCCcc
Q 019461 132 AKCCICLNIWH------DVVTVAP--------CLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAV 181 (340)
Q Consensus 132 l~C~IC~~~~~------~Pv~l~p--------CgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~ 181 (340)
..|.||...+. .|.++ . |+|+.|..|+...+.+.. ..||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl-~~~~~~~~~c~htlc~~c~~~~l~~~~-----~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVL-SLSRLKEKIEGHTLCKECIDTILLQAG-----IKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHH-HHHHHHHHHHHHHHHhcchHHHHHHhh-----hcCCcccce
Confidence 56889987775 46777 6 999999999999887653 689999864
No 179
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=34.27 E-value=35 Score=24.85 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=19.8
Q ss_pred ceEeccEecCCCceeeccCCCeeccCCC
Q 019461 74 AILVDDTMVQNEEVVDIKCGTEIIPGPD 101 (340)
Q Consensus 74 gt~vng~~i~~~~~~~l~~gd~I~lg~~ 101 (340)
..+|||+.+. ....|++||+|.+-+.
T Consensus 51 ~v~vNg~~v~--~~~~l~~gD~v~i~pp 76 (80)
T cd00754 51 RIAVNGEYVR--LDTPLKDGDEVAIIPP 76 (80)
T ss_pred EEEECCeEcC--CCcccCCCCEEEEeCC
Confidence 4677887777 3568999999987663
No 180
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription]
Probab=31.95 E-value=39 Score=35.33 Aligned_cols=52 Identities=17% Similarity=0.080 Sum_probs=43.6
Q ss_pred ccccceEEEEEeCCCCeEEEEeccCCceEeccEecCCCc---eeeccCCCeeccC
Q 019461 48 SDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNEE---VVDIKCGTEIIPG 99 (340)
Q Consensus 48 ~vS~~H~~i~~~~~~~~~~i~D~StNgt~vng~~i~~~~---~~~l~~gd~I~lg 99 (340)
.+++.|..|+.+...+.|+|.+...||..|+|.++..+- ...|.-|-++..+
T Consensus 126 ~~~~~~~sIr~Nls~~~a~~~i~g~~g~~~~g~~~~igP~~~~~~l~~g~~~~~~ 180 (610)
T COG5025 126 VVSRWQNSIRHNLSLNDAFIKIEGRNGAKVKGHFWSIGPGHETQFLKSGLRLDGG 180 (610)
T ss_pred ccchhhhhhhcccccCceEEEEeccCCccccceeeccCCCccceeeccccccccc
Confidence 589999999999888889999999999999999988765 5667777555544
No 181
>KOG2272 consensus Focal adhesion protein PINCH-1, contains LIM domains [Signal transduction mechanisms; Cytoskeleton]
Probab=31.65 E-value=20 Score=32.98 Aligned_cols=49 Identities=18% Similarity=0.344 Sum_probs=23.0
Q ss_pred CCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcc
Q 019461 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAV 181 (340)
Q Consensus 130 e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~ 181 (340)
.-++|.+|...|.+-..+-.=|...|..|-.+-.. ...+.+.|-.|.+.
T Consensus 98 ~CF~Cd~Cn~~Lad~gf~rnqgr~LC~~Cn~k~Ka---~~~g~YvC~KCh~~ 146 (332)
T KOG2272|consen 98 ACFRCDLCNKHLADQGFYRNQGRALCRECNQKEKA---KGRGRYVCQKCHAH 146 (332)
T ss_pred ccchhHHHHHHHhhhhhHhhcchHHhhhhhhhhcc---cccceeehhhhhhh
Confidence 34566666666655433323444455555433111 11234556655443
No 182
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.43 E-value=35 Score=29.12 Aligned_cols=13 Identities=23% Similarity=0.912 Sum_probs=9.3
Q ss_pred CCCcccccccccc
Q 019461 287 SVPQHCLGCDRAF 299 (340)
Q Consensus 287 ~~~~~C~~C~~~~ 299 (340)
..|.||.-|+.||
T Consensus 66 ~~PsYC~~CGkpy 78 (158)
T PF10083_consen 66 EAPSYCHNCGKPY 78 (158)
T ss_pred CCChhHHhCCCCC
Confidence 4677777777765
No 183
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=30.79 E-value=45 Score=23.13 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=19.8
Q ss_pred cCCceEeccEecCCCceeeccCCCeecc
Q 019461 71 SSNAILVDDTMVQNEEVVDIKCGTEIIP 98 (340)
Q Consensus 71 StNgt~vng~~i~~~~~~~l~~gd~I~l 98 (340)
..+..+|||+.+.+. ...|..||.|.+
T Consensus 32 ~~G~V~VNg~~~~~~-~~~l~~Gd~v~i 58 (59)
T TIGR02988 32 QENEVLVNGELENRR-GKKLYPGDVIEI 58 (59)
T ss_pred HcCCEEECCEEccCC-CCCCCCCCEEEe
Confidence 456788999987532 468899998864
No 184
>smart00797 AHS2 Allophanate hydrolase subunit 2. This domain represents subunit 2 of allophanate hydrolase (AHS2).
Probab=30.34 E-value=1.3e+02 Score=28.39 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=27.3
Q ss_pred EeccEecCCCceeeccCCCeeccCCCCcceecc
Q 019461 76 LVDDTMVQNEEVVDIKCGTEIIPGPDREVYLNF 108 (340)
Q Consensus 76 ~vng~~i~~~~~~~l~~gd~I~lg~~~~~~~~y 108 (340)
.|||+.+.....+.++.||+|.++..+.+.-.|
T Consensus 58 ~ln~~~~~~~~~~~v~~Gd~L~~g~~~~G~R~Y 90 (280)
T smart00797 58 TLDGQPVPPWKPFLVRAGQVLSLGAPKAGARAY 90 (280)
T ss_pred eECCEEcCCCeEEEECCCCEEEeCCCCCccEEE
Confidence 468888888888999999999999877665444
No 185
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.27 E-value=35 Score=27.53 Aligned_cols=9 Identities=44% Similarity=1.431 Sum_probs=6.7
Q ss_pred ccccccccc
Q 019461 291 HCLGCDRAF 299 (340)
Q Consensus 291 ~C~~C~~~~ 299 (340)
.|..|..+|
T Consensus 57 ~C~~C~~~f 65 (112)
T TIGR00622 57 FCFGCQGPF 65 (112)
T ss_pred cccCcCCCC
Confidence 488888776
No 186
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=29.97 E-value=28 Score=29.74 Aligned_cols=26 Identities=19% Similarity=0.425 Sum_probs=18.7
Q ss_pred CCCCCCCCCCCCC-------CCCcccCCCCCcc
Q 019461 247 DSIELPCPQCGTE-------INGFHCNQTTVHL 272 (340)
Q Consensus 247 ~~~~~~C~~C~~~-------~~~~~C~~~~~hl 272 (340)
+.....|+.|... ..+|.||.||..|
T Consensus 106 ~~~~Y~Cp~c~~r~tf~eA~~~~F~Cp~Cg~~L 138 (158)
T TIGR00373 106 NNMFFICPNMCVRFTFNEAMELNFTCPRCGAML 138 (158)
T ss_pred CCCeEECCCCCcEeeHHHHHHcCCcCCCCCCEe
Confidence 4455679999742 2578999988776
No 187
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=29.33 E-value=18 Score=38.91 Aligned_cols=32 Identities=31% Similarity=0.648 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCcccCCCCCc----ccCccccCC
Q 019461 249 IELPCPQCGTEINGFHCNQTTVH----LQCQGCGGM 280 (340)
Q Consensus 249 ~~~~C~~C~~~~~~~~C~~~~~h----l~C~~C~~~ 280 (340)
....|+.|....-..+|+.|+.| ..|..|...
T Consensus 654 ~~r~Cp~Cg~~t~~~~Cp~CG~~T~~~~~Cp~C~~~ 689 (900)
T PF03833_consen 654 GRRRCPKCGKETFYNRCPECGSHTEPVYVCPDCGIE 689 (900)
T ss_dssp ------------------------------------
T ss_pred ecccCcccCCcchhhcCcccCCccccceeccccccc
Confidence 44689999988888899999977 336666554
No 188
>PRK14873 primosome assembly protein PriA; Provisional
Probab=28.42 E-value=35 Score=36.21 Aligned_cols=35 Identities=23% Similarity=0.544 Sum_probs=24.3
Q ss_pred ccCCCCCcccCccccCCCCCCCCCCCccccccccc
Q 019461 264 HCNQTTVHLQCQGCGGMMPSRNDSVPQHCLGCDRA 298 (340)
Q Consensus 264 ~C~~~~~hl~C~~C~~~~p~r~~~~~~~C~~C~~~ 298 (340)
.|..|+..+.|.+|...|-.|.......|.-|+..
T Consensus 385 ~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~ 419 (665)
T PRK14873 385 ACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRA 419 (665)
T ss_pred EhhhCcCeeECCCCCCceeEecCCCeeECCCCcCC
Confidence 67777777778888777776655445677777654
No 189
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.17 E-value=32 Score=26.58 Aligned_cols=16 Identities=38% Similarity=1.157 Sum_probs=13.3
Q ss_pred CcccHhhHHHHHHhcc
Q 019461 152 HNFCNGCFSEWLRRSQ 167 (340)
Q Consensus 152 H~FC~~Cl~~~~~~~~ 167 (340)
-.||+.|+..|.....
T Consensus 41 AgFCRNCLs~Wy~eaa 56 (104)
T COG3492 41 AGFCRNCLSNWYREAA 56 (104)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4699999999998653
No 190
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=27.68 E-value=31 Score=32.83 Aligned_cols=28 Identities=36% Similarity=0.814 Sum_probs=20.6
Q ss_pred CCCCCCCCC--CCCcccCCCCCcccCccccCC
Q 019461 251 LPCPQCGTE--INGFHCNQTTVHLQCQGCGGM 280 (340)
Q Consensus 251 ~~C~~C~~~--~~~~~C~~~~~hl~C~~C~~~ 280 (340)
+-|+.|-.. ..-++|+. .||.|..|...
T Consensus 49 leCPvC~~~l~~Pi~QC~n--GHlaCssC~~~ 78 (299)
T KOG3002|consen 49 LDCPVCFNPLSPPIFQCDN--GHLACSSCRTK 78 (299)
T ss_pred ccCchhhccCcccceecCC--CcEehhhhhhh
Confidence 459999653 35688986 78888888755
No 191
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=26.82 E-value=38 Score=29.61 Aligned_cols=26 Identities=31% Similarity=0.639 Sum_probs=17.5
Q ss_pred CCCCCCCCCCCC-------CCCCcccCCCCCcc
Q 019461 247 DSIELPCPQCGT-------EINGFHCNQTTVHL 272 (340)
Q Consensus 247 ~~~~~~C~~C~~-------~~~~~~C~~~~~hl 272 (340)
+.....|+.|.. ...+|.||.|+..|
T Consensus 114 ~~~~Y~Cp~C~~rytf~eA~~~~F~Cp~Cg~~L 146 (178)
T PRK06266 114 NNMFFFCPNCHIRFTFDEAMEYGFRCPQCGEML 146 (178)
T ss_pred CCCEEECCCCCcEEeHHHHhhcCCcCCCCCCCC
Confidence 345567999964 22568888887655
No 192
>PF14353 CpXC: CpXC protein
Probab=26.14 E-value=51 Score=26.77 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=24.4
Q ss_pred CceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 131 HAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 131 ~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
+++||-|...+.-.+-. .-.-..=..=.++.+. + .-..++||.|...+..
T Consensus 1 ~itCP~C~~~~~~~v~~-~I~~~~~p~l~e~il~-g--~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWT-SINADEDPELKEKILD-G--SLFSFTCPSCGHKFRL 50 (128)
T ss_pred CcCCCCCCCeeEEEEEe-EEcCcCCHHHHHHHHc-C--CcCEEECCCCCCceec
Confidence 46888888777543332 1110111111122221 1 1135789999987764
No 193
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=25.83 E-value=26 Score=19.48 Aligned_cols=12 Identities=25% Similarity=0.645 Sum_probs=8.3
Q ss_pred cccccccccccc
Q 019461 290 QHCLGCDRAFCG 301 (340)
Q Consensus 290 ~~C~~C~~~~C~ 301 (340)
++|.+|++.|-.
T Consensus 1 ~~C~~C~~~f~s 12 (25)
T PF12874_consen 1 FYCDICNKSFSS 12 (25)
T ss_dssp EEETTTTEEESS
T ss_pred CCCCCCCCCcCC
Confidence 578888877643
No 194
>smart00363 S4 S4 RNA-binding domain.
Probab=25.60 E-value=81 Score=20.58 Aligned_cols=29 Identities=17% Similarity=0.107 Sum_probs=20.4
Q ss_pred cCCceEeccEecCCCceeeccCCCeeccCC
Q 019461 71 SSNAILVDDTMVQNEEVVDIKCGTEIIPGP 100 (340)
Q Consensus 71 StNgt~vng~~i~~~~~~~l~~gd~I~lg~ 100 (340)
..++.+|||+.+... ...+..||.|.+..
T Consensus 24 ~~g~i~vng~~~~~~-~~~l~~gd~i~~~~ 52 (60)
T smart00363 24 EQGRVKVNGKKVTKP-SYIVKPGDVISVRG 52 (60)
T ss_pred HcCCEEECCEEecCC-CeEeCCCCEEEEcc
Confidence 456788999988332 45678888887643
No 195
>PF02626 AHS2: Allophanate hydrolase subunit 2; InterPro: IPR003778 Allophanate hydrolase catalyses the second reaction in an ATP-dependent, two-step degradation of urea to ammonia and C02. This follows the action of the biotin-containing urea carboxylase. Saccharomyces cerevisiae can use urea as a sole nitrogen source via this degradation pathway []. In yeast, the fusion of allophanate hydrolase to urea carboxylase is called urea amidolyase. In bacteria, the second step in the urea degradation pathway is also the ATP-dependent allophanate hydrolase. The gene encoding this enzyme is found adjacent to the urea carboxylase gene []. Allophanate hydrolase has strict substrate specificity, as analogues of allophanate are not hydrolysed by it []. This domain represents subunit 2 of allophanate hydrolase (AHS2) which is found in urea carboxylase.; PDB: 3MML_G 3VA7_A 3OEP_A 3OPF_C 3ORE_B.
Probab=25.24 E-value=46 Score=31.12 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=25.4
Q ss_pred eEeccEecCCCceeeccCCCeeccCCCCcceecc
Q 019461 75 ILVDDTMVQNEEVVDIKCGTEIIPGPDREVYLNF 108 (340)
Q Consensus 75 t~vng~~i~~~~~~~l~~gd~I~lg~~~~~~~~y 108 (340)
..|||+.+...+.+.++.||+|.++....+.-.|
T Consensus 57 ~~lng~~~~~~~~~~v~~Gd~L~~~~~~~G~r~Y 90 (271)
T PF02626_consen 57 ATLNGKPVPMWQPFLVKAGDVLKFGPPRSGARAY 90 (271)
T ss_dssp EEETTEEE-TTSEEEE-TT-EEEEEEESSECEEE
T ss_pred eEECCEEccCCEEEEECCCCEEEecCCCCccEEE
Confidence 4579999999999999999999999876654443
No 196
>TIGR01053 LSD1 zinc finger domain, LSD1 subclass. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC
Probab=25.04 E-value=46 Score=20.39 Aligned_cols=24 Identities=21% Similarity=0.607 Sum_probs=11.4
Q ss_pred cCccccCCCCCCCCCCCccccccc
Q 019461 273 QCQGCGGMMPSRNDSVPQHCLGCD 296 (340)
Q Consensus 273 ~C~~C~~~~p~r~~~~~~~C~~C~ 296 (340)
.|.+|...+..-+.....+|..|.
T Consensus 3 ~C~~C~t~L~yP~gA~~vrCs~C~ 26 (31)
T TIGR01053 3 VCGGCRTLLMYPRGASSVRCALCQ 26 (31)
T ss_pred CcCCCCcEeecCCCCCeEECCCCC
Confidence 355555443332223455666664
No 197
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=24.76 E-value=92 Score=28.88 Aligned_cols=68 Identities=18% Similarity=0.146 Sum_probs=55.6
Q ss_pred CCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhcc
Q 019461 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAHS 203 (340)
Q Consensus 130 e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~~ 203 (340)
+.+.|.|=++++++|+.. |=|-++=..=|++.++.-+ .-=|+=|.++.. +.+|..|...|+.|++.+.
T Consensus 210 d~lcgkIt~el~~~pvi~-psgIty~ra~I~Ehl~rvg-----hfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~ 279 (284)
T KOG4642|consen 210 DYLCGKITLELMREPVIT-PSGITYDRADIEEHLQRVG-----HFDPVTRWPLTEYQLIPNLALKEVIAAFLKENE 279 (284)
T ss_pred chhhhhhhHHhhcCCccC-ccccchhHHHHHHHHHHhc-----cCCchhcccCCHHhhccchHHHHHHHHHHHhcc
Confidence 567778999999999999 9999999999999887543 234666666665 8899999999999988764
No 198
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=24.55 E-value=22 Score=31.87 Aligned_cols=29 Identities=34% Similarity=0.747 Sum_probs=18.9
Q ss_pred CcccCccccCCCCC----------CCCCCCcccccccccc
Q 019461 270 VHLQCQGCGGMMPS----------RNDSVPQHCLGCDRAF 299 (340)
Q Consensus 270 ~hl~C~~C~~~~p~----------r~~~~~~~C~~C~~~~ 299 (340)
.|| |..|+.-|-+ +..+.|++|..|.++|
T Consensus 145 r~l-ct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaf 183 (267)
T KOG3576|consen 145 RHL-CTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAF 183 (267)
T ss_pred HHH-HhhccCcccchhhhhhhhccccCccccchhhhhHHH
Confidence 455 6666655332 2227889999998887
No 199
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=24.00 E-value=20 Score=23.80 Aligned_cols=30 Identities=30% Similarity=0.627 Sum_probs=19.9
Q ss_pred CCCCCCCC-CC--CCcccCCCCCcccCccccCC
Q 019461 251 LPCPQCGT-EI--NGFHCNQTTVHLQCQGCGGM 280 (340)
Q Consensus 251 ~~C~~C~~-~~--~~~~C~~~~~hl~C~~C~~~ 280 (340)
+.|..|.. ++ ..|.|..|..+-.|..|...
T Consensus 5 ~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~ 37 (46)
T PF00569_consen 5 YTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSK 37 (46)
T ss_dssp CE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH
T ss_pred eECcCCCCCcCcCCeEECCCCCCCchhhHHHhC
Confidence 46888976 43 45889998888779888643
No 200
>PF14168 YjzC: YjzC-like protein
Probab=23.97 E-value=63 Score=22.80 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=17.3
Q ss_pred cCCceEec----cEecCCCceeeccCCCeecc
Q 019461 71 SSNAILVD----DTMVQNEEVVDIKCGTEIIP 98 (340)
Q Consensus 71 StNgt~vn----g~~i~~~~~~~l~~gd~I~l 98 (340)
-.||+|+. |-.|...+.|.|..||++=.
T Consensus 14 pn~G~Y~EvG~~G~~v~~p~~v~l~~Gd~fP~ 45 (57)
T PF14168_consen 14 PNNGTYVEVGERGGHVNNPKEVKLKKGDRFPP 45 (57)
T ss_pred CCCceEEEECCCCCccCCCcEEEecCCCcCcC
Confidence 35666664 22355666788888877643
No 201
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=23.61 E-value=33 Score=20.70 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=9.3
Q ss_pred CCccccccccccc
Q 019461 288 VPQHCLGCDRAFC 300 (340)
Q Consensus 288 ~~~~C~~C~~~~C 300 (340)
.+++|.+|++.|=
T Consensus 2 ~~~~C~~C~~~~~ 14 (35)
T smart00451 2 GGFYCKLCNVTFT 14 (35)
T ss_pred cCeEccccCCccC
Confidence 3578888887653
No 202
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=22.37 E-value=47 Score=23.48 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=18.0
Q ss_pred eEeccEecCCCc--eeeccCCCeeccCC
Q 019461 75 ILVDDTMVQNEE--VVDIKCGTEIIPGP 100 (340)
Q Consensus 75 t~vng~~i~~~~--~~~l~~gd~I~lg~ 100 (340)
.-+|+..+.+.. ...|++||+|.+-+
T Consensus 33 vavN~~iv~~~~~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 33 TAVNGELVHKEARAQFVLHEGDRIEILS 60 (65)
T ss_pred EEECCEEcCHHHcCccccCCCCEEEEEE
Confidence 356666666533 57899999997654
No 203
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=22.35 E-value=47 Score=23.91 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=19.0
Q ss_pred ceEeccEecCC-CceeeccCCCeeccCC
Q 019461 74 AILVDDTMVQN-EEVVDIKCGTEIIPGP 100 (340)
Q Consensus 74 gt~vng~~i~~-~~~~~l~~gd~I~lg~ 100 (340)
..+|||+.+.. +....|++||+|.+.+
T Consensus 45 ~v~vN~~~v~~~~~~~~l~~gD~V~i~p 72 (77)
T PF02597_consen 45 AVAVNGEIVPDDGLDTPLKDGDEVAILP 72 (77)
T ss_dssp EEEETTEEEGGGTTTSBEETTEEEEEEE
T ss_pred EEEECCEEcCCccCCcCcCCCCEEEEEC
Confidence 34667777666 3356889999998755
No 204
>PRK06437 hypothetical protein; Provisional
Probab=22.22 E-value=80 Score=22.69 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=18.1
Q ss_pred ceEeccEecCCCceeeccCCCeeccCC
Q 019461 74 AILVDDTMVQNEEVVDIKCGTEIIPGP 100 (340)
Q Consensus 74 gt~vng~~i~~~~~~~l~~gd~I~lg~ 100 (340)
...+||..+. ....|++||+|.+-+
T Consensus 38 aV~vNg~iv~--~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 38 VVIVNGSPVL--EDHNVKKEDDVLILE 62 (67)
T ss_pred EEEECCEECC--CceEcCCCCEEEEEe
Confidence 4457777776 467899999997654
No 205
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=21.83 E-value=33 Score=20.78 Aligned_cols=19 Identities=21% Similarity=0.735 Sum_probs=8.2
Q ss_pred CCCCCCCCCCcccCCCCCcc
Q 019461 253 CPQCGTEINGFHCNQTTVHL 272 (340)
Q Consensus 253 C~~C~~~~~~~~C~~~~~hl 272 (340)
|..|.. .+.|.||.|+...
T Consensus 5 C~vC~~-~~kY~Cp~C~~~~ 23 (30)
T PF04438_consen 5 CSVCGN-PAKYRCPRCGARY 23 (30)
T ss_dssp ETSSSS-EESEE-TTT--EE
T ss_pred CccCcC-CCEEECCCcCCce
Confidence 455544 4455555555444
No 206
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.37 E-value=39 Score=32.01 Aligned_cols=54 Identities=24% Similarity=0.572 Sum_probs=43.6
Q ss_pred hccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 125 ISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 125 ~~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
.....++-.|-||...|.-|-...-|+|-||..|...|....+ .||.|+.....
T Consensus 99 A~~~~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~------~~~d~~~~~~p 152 (324)
T KOG0824|consen 99 AGFQQDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGN------DCPDCRGKISP 152 (324)
T ss_pred ccccCCccceeeeeeeEEecccccCceeeeeecCCchhhhhhh------ccchhhcCcCc
Confidence 3344567789999999998877767999999999998887765 79999876654
No 207
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=21.21 E-value=55 Score=22.83 Aligned_cols=11 Identities=27% Similarity=0.800 Sum_probs=7.5
Q ss_pred CCCcccccccc
Q 019461 287 SVPQHCLGCDR 297 (340)
Q Consensus 287 ~~~~~C~~C~~ 297 (340)
..|.||.-|++
T Consensus 26 NfPlyCpKCK~ 36 (55)
T PF14205_consen 26 NFPLYCPKCKQ 36 (55)
T ss_pred cccccCCCCCc
Confidence 56777776654
No 208
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=20.95 E-value=75 Score=22.43 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=18.4
Q ss_pred eEeccEecCCC--ceeeccCCCeeccCC
Q 019461 75 ILVDDTMVQNE--EVVDIKCGTEIIPGP 100 (340)
Q Consensus 75 t~vng~~i~~~--~~~~l~~gd~I~lg~ 100 (340)
..|||+.+.+. ....|++||+|.+-+
T Consensus 33 V~vNg~~v~~~~~~~~~L~~gD~V~ii~ 60 (65)
T cd00565 33 VALNGEIVPRSEWASTPLQDGDRIEIVT 60 (65)
T ss_pred EEECCEEcCHHHcCceecCCCCEEEEEE
Confidence 45677777654 346899999998654
No 209
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=20.86 E-value=76 Score=23.36 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=18.3
Q ss_pred eEeccEecCCCceeeccCCCeeccCCC
Q 019461 75 ILVDDTMVQNEEVVDIKCGTEIIPGPD 101 (340)
Q Consensus 75 t~vng~~i~~~~~~~l~~gd~I~lg~~ 101 (340)
.+||++.+.. ...|++||+|.+.+.
T Consensus 52 v~vn~~~v~~--~~~l~dgDevai~Pp 76 (80)
T TIGR01682 52 VAVNEEYVTD--DALLNEGDEVAFIPP 76 (80)
T ss_pred EEECCEEcCC--CcCcCCCCEEEEeCC
Confidence 4566666663 568999999988764
No 210
>PF06044 DRP: Dam-replacing family; InterPro: IPR010324 Dam-replacing protein (DRP) is a restriction endonuclease that is flanked by pseudo-transposable small repeat elements. The replacement of Dam-methylase by DRP allows phase variation through slippage-like mechanisms in several pathogenic isolates of Neisseria meningitidis [].; PDB: 4ESJ_A.
Probab=20.85 E-value=40 Score=30.95 Aligned_cols=19 Identities=32% Similarity=1.009 Sum_probs=7.1
Q ss_pred CCCCCCCC----------CCCCcccCCCC
Q 019461 251 LPCPQCGT----------EINGFHCNQTT 269 (340)
Q Consensus 251 ~~C~~C~~----------~~~~~~C~~~~ 269 (340)
.+|+.|+. ++++|+|+.|.
T Consensus 32 ~yCP~Cg~~~L~~f~NN~PVaDF~C~~C~ 60 (254)
T PF06044_consen 32 MYCPNCGSKPLSKFENNRPVADFYCPNCN 60 (254)
T ss_dssp ---TTT--SS-EE--------EEE-TTT-
T ss_pred CcCCCCCChhHhhccCCCccceeECCCCc
Confidence 37888863 56777777765
No 211
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=20.70 E-value=75 Score=22.24 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=18.2
Q ss_pred eEeccEecCCC--ceeeccCCCeeccCC
Q 019461 75 ILVDDTMVQNE--EVVDIKCGTEIIPGP 100 (340)
Q Consensus 75 t~vng~~i~~~--~~~~l~~gd~I~lg~ 100 (340)
..+||..+.+. ....|++||+|.+-+
T Consensus 33 v~vN~~~v~~~~~~~~~L~~gD~vei~~ 60 (65)
T PRK06944 33 VAVNGDFVARTQHAARALAAGDRLDLVQ 60 (65)
T ss_pred EEECCEEcCchhcccccCCCCCEEEEEe
Confidence 36677777543 356799999997654
No 212
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=20.47 E-value=70 Score=22.90 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=12.5
Q ss_pred EeccEecCCC-ceeeccCCCeecc
Q 019461 76 LVDDTMVQNE-EVVDIKCGTEIIP 98 (340)
Q Consensus 76 ~vng~~i~~~-~~~~l~~gd~I~l 98 (340)
+|||+....+ ..+.|++||.|.+
T Consensus 44 ~vNG~~~~~ga~~~~l~~GD~i~~ 67 (68)
T PF14478_consen 44 YVNGESANVGAGSYKLKDGDKITW 67 (68)
T ss_dssp EETTEE-SS-CCC-B--TTEEEEE
T ss_pred EECCEEhhcCcceeEeCCCCEEEe
Confidence 5677766553 2577899998864
No 213
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=20.41 E-value=20 Score=24.91 Aligned_cols=15 Identities=33% Similarity=0.904 Sum_probs=12.6
Q ss_pred CCCCcccHhhHHHHH
Q 019461 149 PCLHNFCNGCFSEWL 163 (340)
Q Consensus 149 pCgH~FC~~Cl~~~~ 163 (340)
.|++.||..|...|.
T Consensus 45 ~C~~~fC~~C~~~~H 59 (64)
T smart00647 45 KCGFSFCFRCKVPWH 59 (64)
T ss_pred CCCCeECCCCCCcCC
Confidence 589999999987764
No 214
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=20.30 E-value=5.5e+02 Score=24.69 Aligned_cols=69 Identities=12% Similarity=0.101 Sum_probs=47.9
Q ss_pred ccEEEEeCCCCCceeEeeC--CceEEec----ccccCC-ccccceEEEEEeCCCCeEEEEecc--CCceEeccEecCCCc
Q 019461 16 IWAKLEPSDSRFADVDISS--NEVVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNKS--SNAILVDDTMVQNEE 86 (340)
Q Consensus 16 ~~~~L~~~~~~~~~~~l~~--~~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~S--tNgt~vng~~i~~~~ 86 (340)
.||..--++.++-.+++.. ...+.|| .....+ .||+.-+-.-+.+.+ .+|.|.| ++.+|+.....+.+.
T Consensus 139 n~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~ISGn~AYvA~~d~G--L~ivDVSnp~sPvli~~~n~g~g~ 216 (370)
T COG5276 139 NYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAISGNYAYVAWRDGG--LTIVDVSNPHSPVLIGSYNTGPGT 216 (370)
T ss_pred CEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEecCeEEEEEeCCC--eEEEEccCCCCCeEEEEEecCCce
Confidence 4565555555566666644 4588999 233334 789999988866555 9999996 688888877777543
No 215
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=20.21 E-value=88 Score=23.61 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=20.8
Q ss_pred CceEeccEecCCCceeeccCCCeeccCC
Q 019461 73 NAILVDDTMVQNEEVVDIKCGTEIIPGP 100 (340)
Q Consensus 73 Ngt~vng~~i~~~~~~~l~~gd~I~lg~ 100 (340)
...+|||+.+..+ +.+++||.|.+-+
T Consensus 50 ~~i~vNG~~v~~~--~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 50 GLILVNGRPVDFD--YRLKDGDRVAVYP 75 (81)
T ss_pred EEEEECCEECCCc--ccCCCCCEEEEEe
Confidence 3458899999985 6889999998655
No 216
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.17 E-value=85 Score=27.47 Aligned_cols=56 Identities=29% Similarity=0.584 Sum_probs=35.6
Q ss_pred ccCCceeccccccccC---c----cEeCCCCCcccHhhHHHHHHhccCCCC-----CcCCCCCCccccc
Q 019461 128 DIEHAKCCICLNIWHD---V----VTVAPCLHNFCNGCFSEWLRRSQEKRS-----TVLCPHCRAVVQF 184 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~---P----v~l~pCgH~FC~~Cl~~~~~~~~~~~~-----~~~CP~Cr~~~~~ 184 (340)
+++..-|.||.-+--+ | -.. .|+..|..-|+..|++.---... -..||.|..++..
T Consensus 162 dd~~~~cgicyayqldGTipDqtCdN~-qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 162 DDELGACGICYAYQLDGTIPDQTCDNI-QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred chhhhcccceeeeecCCcccccccccc-ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 3455567777754322 1 123 69999999999999974211111 1369999887764
No 217
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.04 E-value=47 Score=32.70 Aligned_cols=36 Identities=25% Similarity=0.628 Sum_probs=27.8
Q ss_pred CCceecccccccc-----CccEeCCCCCcccHhhHHHHHHhc
Q 019461 130 EHAKCCICLNIWH-----DVVTVAPCLHNFCNGCFSEWLRRS 166 (340)
Q Consensus 130 e~l~C~IC~~~~~-----~Pv~l~pCgH~FC~~Cl~~~~~~~ 166 (340)
.-..||.|+-.+. +-++- .|||-||..|...|...+
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~C-rC~~~fcy~C~~~~~~~~ 345 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTC-RCGHQFCYMCGGDWKTHN 345 (384)
T ss_pred hcCcCcccceeeeecCCcceEEe-eccccchhhcCcchhhCC
Confidence 3568999987652 45777 699999999998887654
Done!