Query 019461
Match_columns 340
No_of_seqs 375 out of 2333
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 16:26:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gxc_A CHK2, CDS1, serine/thre 99.8 1.2E-19 4.2E-24 153.4 10.3 104 11-116 24-144 (149)
2 1lgp_A Cell cycle checkpoint p 99.7 2.5E-18 8.6E-23 139.2 8.8 101 15-115 2-113 (116)
3 1g6g_A Protein kinase RAD53; b 99.7 5.7E-17 2E-21 133.4 10.1 99 15-114 3-121 (127)
4 2jqj_A DNA damage response pro 99.7 6.4E-17 2.2E-21 137.0 9.5 89 11-100 12-113 (151)
5 3va4_A Mediator of DNA damage 99.6 8.7E-16 3E-20 127.0 8.6 88 13-100 20-118 (132)
6 1uht_A Expressed protein; FHA 99.6 2.3E-15 8E-20 122.1 10.0 87 13-101 8-104 (118)
7 4h87_A Kanadaptin; FHA domain 99.6 1.8E-15 6.3E-20 124.7 9.4 83 19-101 22-122 (130)
8 1dmz_A Protein (protein kinase 99.6 3.7E-15 1.3E-19 127.0 10.0 96 15-110 3-120 (158)
9 2pie_A E3 ubiquitin-protein li 99.6 6.1E-15 2.1E-19 122.9 10.6 97 15-113 8-117 (138)
10 1qu5_A Protein kinase SPK1; FH 99.6 1.9E-15 6.7E-20 131.5 7.5 87 14-100 26-134 (182)
11 1g3g_A Protien kinase SPK1; FH 99.6 8.9E-15 3E-19 125.4 11.1 100 13-114 29-149 (164)
12 3hx1_A SLR1951 protein; P74513 99.6 5.4E-15 1.9E-19 122.1 9.4 92 7-101 1-107 (131)
13 3ztg_A E3 ubiquitin-protein li 99.5 5E-15 1.7E-19 114.5 6.5 72 127-203 9-84 (92)
14 2jpe_A Nuclear inhibitor of pr 99.5 1.4E-14 4.9E-19 120.9 8.5 82 20-101 37-128 (140)
15 3po8_A RV0020C protein, putati 99.5 2.7E-14 9.3E-19 112.3 9.6 80 16-100 4-89 (100)
16 1mzk_A Kinase associated prote 99.5 4.1E-14 1.4E-18 118.0 11.0 88 14-101 4-112 (139)
17 2csw_A Ubiquitin ligase protei 99.5 3E-14 1E-18 119.7 10.1 99 13-113 14-125 (145)
18 1t1h_A Gspef-atpub14, armadill 99.5 6.6E-15 2.3E-19 110.3 5.1 68 129-202 6-75 (78)
19 2xt9_B Putative signal transdu 99.5 7.9E-14 2.7E-18 112.5 10.8 83 13-100 7-97 (115)
20 3oun_A Putative uncharacterize 99.5 7.3E-14 2.5E-18 118.3 9.3 79 17-100 67-151 (157)
21 2kb3_A Oxoglutarate dehydrogen 99.5 1.6E-13 5.6E-18 114.8 11.0 80 16-100 45-132 (143)
22 1wln_A Afadin; beta sandwich, 99.5 1E-13 3.5E-18 112.7 9.2 84 13-100 7-105 (120)
23 2kr4_A Ubiquitin conjugation f 99.5 3.2E-14 1.1E-18 108.7 5.8 68 129-203 12-81 (85)
24 1r21_A Antigen KI-67; beta san 99.5 4.9E-14 1.7E-18 115.9 6.7 82 15-100 10-100 (128)
25 2y43_A E3 ubiquitin-protein li 99.5 3.4E-14 1.2E-18 111.4 5.1 71 128-204 19-91 (99)
26 3i6u_A CDS1, serine/threonine- 99.4 1.4E-13 4.7E-18 134.3 9.3 93 11-103 4-113 (419)
27 2kfu_A RV1827 PThr 22; FHA dom 99.4 2.7E-13 9.3E-18 115.7 9.9 80 16-100 54-141 (162)
28 1wgm_A Ubiquitin conjugation f 99.4 8.4E-14 2.9E-18 109.2 6.2 69 129-204 20-91 (98)
29 2kre_A Ubiquitin conjugation f 99.4 7.1E-14 2.4E-18 110.0 5.6 69 129-204 27-97 (100)
30 3fl2_A E3 ubiquitin-protein li 99.4 4E-14 1.4E-18 115.6 4.2 70 127-202 48-120 (124)
31 3gqs_A Adenylate cyclase-like 99.4 4.7E-13 1.6E-17 106.4 10.2 79 19-100 6-94 (106)
32 2yu4_A E3 SUMO-protein ligase 99.4 1.5E-13 5.1E-18 106.9 6.9 74 129-203 5-84 (94)
33 2brf_A Bifunctional polynucleo 99.4 4.5E-13 1.5E-17 106.2 9.5 87 15-101 7-98 (110)
34 3lrq_A E3 ubiquitin-protein li 99.4 5.6E-14 1.9E-18 110.5 4.1 73 126-203 17-91 (100)
35 1yj5_C 5' polynucleotide kinas 99.4 9.6E-13 3.3E-17 108.0 11.3 88 15-102 7-99 (143)
36 3els_A PRE-mRNA leakage protei 99.4 7.6E-13 2.6E-17 112.5 9.3 75 28-102 48-146 (158)
37 3kt9_A Aprataxin; FHA domain, 99.4 1.4E-12 4.7E-17 102.3 9.8 84 19-102 6-93 (102)
38 4ayc_A E3 ubiquitin-protein li 99.4 1.1E-13 3.8E-18 115.1 3.3 67 128-201 50-116 (138)
39 1ujx_A Polynucleotide kinase 3 99.4 2.1E-12 7.2E-17 103.6 10.6 89 13-101 12-105 (119)
40 2ckl_A Polycomb group ring fin 99.4 1.6E-13 5.6E-18 109.2 3.9 70 125-200 9-84 (108)
41 3elv_A PRE-mRNA leakage protei 99.4 1.1E-12 3.7E-17 115.3 8.9 76 27-102 94-193 (205)
42 3fm8_A Kinesin-like protein KI 99.4 1.8E-12 6.2E-17 105.7 9.3 81 16-100 25-115 (124)
43 1z6u_A NP95-like ring finger p 99.4 2.8E-13 9.6E-18 114.4 4.3 68 128-201 75-145 (150)
44 2xoc_A E3 ubiquitin-protein li 99.4 1.7E-13 5.8E-18 123.2 3.0 63 259-321 67-137 (261)
45 3l11_A E3 ubiquitin-protein li 99.4 4.7E-14 1.6E-18 113.6 -0.9 71 126-202 10-89 (115)
46 2ecw_A Tripartite motif-contai 99.3 1.8E-13 6.3E-18 103.5 1.3 66 128-194 16-83 (85)
47 4ejq_A Kinesin-like protein KI 99.3 3.9E-12 1.3E-16 107.8 9.6 84 15-100 36-135 (154)
48 2egp_A Tripartite motif-contai 99.3 4.8E-14 1.6E-18 105.6 -2.7 67 127-194 8-77 (79)
49 2ff4_A Probable regulatory pro 99.3 4.7E-12 1.6E-16 122.7 10.4 82 14-100 286-373 (388)
50 2ecv_A Tripartite motif-contai 99.3 1.9E-13 6.5E-18 103.4 -0.1 66 128-194 16-83 (85)
51 2ckl_B Ubiquitin ligase protei 99.3 8.9E-13 3.1E-17 112.9 3.9 71 127-202 50-123 (165)
52 1jm7_B BARD1, BRCA1-associated 99.3 6.1E-13 2.1E-17 107.5 2.4 70 126-203 17-88 (117)
53 2csy_A Zinc finger protein 183 99.3 2.4E-12 8.3E-17 97.0 5.6 55 128-189 12-67 (81)
54 2yur_A Retinoblastoma-binding 99.3 1.8E-12 6.1E-17 96.1 4.3 52 127-183 11-63 (74)
55 1jm7_A BRCA1, breast cancer ty 99.3 7.6E-13 2.6E-17 105.7 2.2 70 128-201 18-89 (112)
56 2djb_A Polycomb group ring fin 99.3 2.2E-12 7.5E-17 95.0 4.1 52 127-184 11-62 (72)
57 2c2l_A CHIP, carboxy terminus 99.3 3.7E-12 1.3E-16 117.3 5.9 70 128-203 205-276 (281)
58 2f42_A STIP1 homology and U-bo 99.2 5.9E-12 2E-16 108.8 5.9 69 129-203 104-174 (179)
59 2ecy_A TNF receptor-associated 99.2 4.8E-12 1.7E-16 91.5 3.9 51 128-184 12-62 (66)
60 3hct_A TNF receptor-associated 99.2 4.9E-12 1.7E-16 102.3 4.2 64 128-197 15-80 (118)
61 2ysl_A Tripartite motif-contai 99.2 4.9E-12 1.7E-16 93.1 3.8 55 126-184 15-69 (73)
62 2ysj_A Tripartite motif-contai 99.2 7.9E-12 2.7E-16 89.4 4.8 49 126-178 15-63 (63)
63 2ct2_A Tripartite motif protei 99.2 4.4E-12 1.5E-16 96.7 2.7 55 126-184 10-68 (88)
64 2d8t_A Dactylidin, ring finger 99.2 9.7E-12 3.3E-16 91.2 2.7 50 128-184 12-61 (71)
65 3ng2_A RNF4, snurf, ring finge 99.2 1.2E-11 4E-16 90.5 2.8 50 128-184 7-63 (71)
66 1rmd_A RAG1; V(D)J recombinati 99.1 2E-11 6.8E-16 98.2 4.4 62 129-196 21-85 (116)
67 1g25_A CDK-activating kinase a 99.1 2.6E-11 8.8E-16 87.3 3.7 49 130-184 2-55 (65)
68 3htk_C E3 SUMO-protein ligase 99.1 3.8E-11 1.3E-15 108.8 4.9 74 124-201 174-251 (267)
69 2ea6_A Ring finger protein 4; 99.1 2.6E-11 8.9E-16 88.0 3.0 49 128-183 12-67 (69)
70 1chc_A Equine herpes virus-1 r 99.1 5.9E-11 2E-15 86.1 4.1 50 129-184 3-52 (68)
71 3knv_A TNF receptor-associated 99.1 2E-11 6.9E-16 101.9 1.7 51 126-182 26-76 (141)
72 2xeu_A Ring finger protein 4; 99.1 4.7E-11 1.6E-15 85.3 3.1 48 130-184 2-56 (64)
73 3hcs_A TNF receptor-associated 99.1 5.7E-11 2E-15 102.0 4.2 63 128-196 15-79 (170)
74 2ecj_A Tripartite motif-contai 99.1 5.7E-11 1.9E-15 83.2 3.2 48 127-178 11-58 (58)
75 1bor_A Transcription factor PM 99.0 4E-11 1.4E-15 83.9 1.3 46 129-184 4-49 (56)
76 2ecm_A Ring finger and CHY zin 99.0 1.2E-10 4.2E-15 80.6 3.6 47 130-183 4-54 (55)
77 1iym_A EL5; ring-H2 finger, ub 99.0 8.4E-11 2.9E-15 81.5 2.8 48 129-183 3-54 (55)
78 1e4u_A Transcriptional repress 99.0 1.5E-10 5E-15 86.7 3.5 51 128-184 8-62 (78)
79 3huf_A DNA repair and telomere 99.0 1.1E-09 3.7E-14 101.5 10.0 75 28-103 14-107 (325)
80 1x4j_A Ring finger protein 38; 99.0 2.2E-10 7.6E-15 84.8 4.1 48 129-183 21-71 (75)
81 2kiz_A E3 ubiquitin-protein li 99.0 2.9E-10 9.8E-15 82.7 4.3 50 128-184 11-63 (69)
82 2ect_A Ring finger protein 126 99.0 2E-10 6.7E-15 85.6 3.0 51 128-184 12-64 (78)
83 2l0b_A E3 ubiquitin-protein li 99.0 3.7E-10 1.3E-14 86.9 4.6 48 129-183 38-88 (91)
84 2ep4_A Ring finger protein 24; 98.9 5.9E-10 2E-14 82.1 4.2 52 127-184 11-64 (74)
85 4ap4_A E3 ubiquitin ligase RNF 98.9 3.3E-10 1.1E-14 92.5 3.0 49 129-184 5-60 (133)
86 3uv0_A Mutator 2, isoform B; F 98.9 2.9E-09 1E-13 82.1 7.8 76 27-114 12-94 (102)
87 2ecn_A Ring finger protein 141 98.9 1.1E-10 3.6E-15 85.3 -0.3 49 128-184 12-60 (70)
88 4ic3_A E3 ubiquitin-protein li 98.9 2.4E-10 8.3E-15 84.6 0.9 47 127-184 20-67 (74)
89 2ecl_A Ring-box protein 2; RNF 98.8 1.7E-09 5.8E-14 81.4 3.5 49 130-184 14-76 (81)
90 1v87_A Deltex protein 2; ring- 98.8 1.9E-09 6.6E-14 86.1 4.0 54 130-184 24-94 (114)
91 4egx_A Kinesin-like protein KI 98.8 2.2E-08 7.6E-13 87.0 10.2 91 16-112 67-173 (184)
92 2ecg_A Baculoviral IAP repeat- 98.7 1.7E-09 5.8E-14 80.1 1.2 46 128-184 22-68 (75)
93 1wim_A KIAA0161 protein; ring 98.7 4.3E-09 1.5E-13 81.3 3.3 52 130-181 4-61 (94)
94 2yho_A E3 ubiquitin-protein li 98.7 1.5E-09 5E-14 81.4 0.0 46 128-184 15-61 (79)
95 4ap4_A E3 ubiquitin ligase RNF 98.7 6.3E-09 2.2E-13 84.8 3.5 52 126-184 67-125 (133)
96 3dpl_R Ring-box protein 1; ubi 98.7 1.3E-08 4.6E-13 80.5 3.9 49 129-183 35-100 (106)
97 2vje_A E3 ubiquitin-protein li 98.6 1.5E-08 5.1E-13 72.7 3.0 49 130-184 7-57 (64)
98 2y1n_A E3 ubiquitin-protein li 98.6 2.5E-08 8.4E-13 95.7 4.6 50 129-184 330-379 (389)
99 2vje_B MDM4 protein; proto-onc 98.6 3.1E-08 1.1E-12 70.8 3.1 49 130-184 6-56 (63)
100 4a0e_A YSCD, type III secretio 98.5 4.7E-07 1.6E-11 72.9 8.1 69 27-100 16-90 (123)
101 2ea5_A Cell growth regulator w 98.4 1E-07 3.4E-12 69.2 3.4 46 128-184 12-58 (68)
102 2bay_A PRE-mRNA splicing facto 98.4 1.1E-07 3.9E-12 67.4 3.3 48 131-184 3-50 (61)
103 4a0k_B E3 ubiquitin-protein li 98.4 4E-08 1.4E-12 79.0 0.4 48 130-183 47-111 (117)
104 3t6p_A Baculoviral IAP repeat- 98.3 9.7E-08 3.3E-12 90.8 1.8 48 126-184 290-338 (345)
105 2d8s_A Cellular modulator of i 98.3 4.8E-07 1.6E-11 67.8 4.3 51 129-184 13-70 (80)
106 2ct0_A Non-SMC element 1 homol 97.8 1.6E-05 5.6E-10 58.4 3.5 52 129-184 13-64 (74)
107 1wv3_A Similar to DNA segregat 97.7 1.9E-05 6.6E-10 71.2 4.0 65 31-100 88-161 (238)
108 3vk6_A E3 ubiquitin-protein li 97.7 2.3E-05 8E-10 60.2 3.5 47 133-184 3-49 (101)
109 1vyx_A ORF K3, K3RING; zinc-bi 97.5 0.00012 4E-09 51.5 4.3 50 129-183 4-58 (60)
110 2jun_A Midline-1; B-BOX, TRIM, 97.4 8.9E-05 3E-09 57.4 3.6 33 130-163 2-37 (101)
111 3k1l_B Fancl; UBC, ring, RWD, 96.9 0.0004 1.4E-08 65.1 2.9 57 128-184 305-373 (381)
112 3m62_A Ubiquitin conjugation f 96.4 0.0024 8.3E-08 67.4 5.3 69 129-204 889-960 (968)
113 3nw0_A Non-structural maintena 92.9 0.06 2E-06 48.1 3.3 51 130-184 179-229 (238)
114 1fre_A Nuclear factor XNF7; zi 87.9 0.63 2.1E-05 29.2 3.9 30 287-316 12-41 (42)
115 2cs3_A Protein C14ORF4, MY039 86.3 0.49 1.7E-05 34.5 2.9 48 129-178 13-64 (93)
116 3i2d_A E3 SUMO-protein ligase 85.4 0.99 3.4E-05 42.7 5.3 62 131-196 249-314 (371)
117 2d8u_A Ubiquitin ligase TRIM63 85.1 0.76 2.6E-05 31.7 3.4 32 287-318 18-49 (64)
118 4fo9_A E3 SUMO-protein ligase 83.4 1.5 5.2E-05 41.3 5.6 63 131-197 215-281 (360)
119 3ddt_A E3 ubiquitin-protein li 80.1 0.37 1.3E-05 31.4 0.2 28 287-314 16-43 (48)
120 2did_A Tripartite motif protei 79.1 0.68 2.3E-05 30.7 1.2 30 287-316 17-46 (53)
121 2dja_A Midline-2; tripartite m 76.1 1.3 4.3E-05 32.3 2.1 33 287-319 28-60 (84)
122 2ko5_A Ring finger protein Z; 75.0 0.54 1.8E-05 35.5 -0.3 46 130-184 27-73 (99)
123 2yvr_A Transcription intermedi 73.3 0.94 3.2E-05 29.6 0.7 19 287-305 16-34 (50)
124 2yrg_A Tripartite motif-contai 71.3 1.6 5.3E-05 29.8 1.4 30 288-317 24-53 (59)
125 2jrp_A Putative cytoplasmic pr 67.5 1.5 5.1E-05 32.2 0.7 6 264-269 33-38 (81)
126 4gne_A Histone-lysine N-methyl 66.1 4.9 0.00017 31.0 3.5 48 260-318 51-98 (107)
127 2csv_A Tripartite motif protei 65.1 1.6 5.6E-05 30.8 0.5 26 288-314 28-53 (72)
128 2jne_A Hypothetical protein YF 63.6 0.88 3E-05 34.5 -1.2 49 250-298 32-90 (101)
129 1weo_A Cellulose synthase, cat 61.4 9 0.00031 28.5 3.9 50 130-184 15-70 (93)
130 2egm_A Tripartite motif-contai 59.8 1.4 4.9E-05 29.8 -0.6 25 288-312 28-52 (57)
131 1bor_A Transcription factor PM 56.9 15 0.00051 24.1 4.2 42 250-299 6-47 (56)
132 3mjh_B Early endosome antigen 48.0 2.5 8.6E-05 25.7 -0.8 18 130-147 4-21 (34)
133 2e6s_A E3 ubiquitin-protein li 45.4 18 0.00061 26.0 3.3 41 251-299 11-51 (77)
134 2lbm_A Transcriptional regulat 42.4 14 0.00049 29.9 2.6 53 128-181 60-117 (142)
135 2d8v_A Zinc finger FYVE domain 41.5 11 0.00038 26.4 1.5 31 251-282 9-39 (67)
136 2o35_A Hypothetical protein DU 41.1 10 0.00035 28.7 1.4 15 152-166 41-55 (105)
137 3fyb_A Protein of unknown func 41.0 10 0.00035 28.7 1.4 15 152-166 40-54 (104)
138 2dlq_A GLI-kruppel family memb 39.5 15 0.00051 27.4 2.3 13 287-299 92-104 (124)
139 2l52_A Methanosarcina acetivor 39.3 8.1 0.00028 29.0 0.6 30 71-100 63-94 (99)
140 2hj1_A Hypothetical protein; s 38.0 9.9 0.00034 28.7 0.9 30 69-100 55-84 (97)
141 3asl_A E3 ubiquitin-protein li 37.2 35 0.0012 23.9 3.7 16 252-268 4-19 (70)
142 1wfp_A Zinc finger (AN1-like) 34.9 51 0.0017 23.5 4.2 25 288-313 38-62 (74)
143 1zbd_B Rabphilin-3A; G protein 33.3 13 0.00045 29.7 1.0 45 252-297 57-106 (134)
144 4esj_A Type-2 restriction enzy 32.9 18 0.00063 31.8 1.9 19 251-269 35-63 (257)
145 2k9x_A Tburm1, uncharacterized 30.8 16 0.00053 28.2 1.0 26 75-100 70-97 (110)
146 2lv2_A Insulinoma-associated p 30.4 7.3 0.00025 28.4 -0.9 14 287-300 54-67 (85)
147 1rws_A Hypothetical protein PF 29.7 29 0.00098 24.5 2.3 26 74-101 48-73 (77)
148 3rpf_C Molybdopterin convertin 29.1 21 0.00071 25.0 1.4 26 75-101 45-70 (74)
149 2fc7_A ZZZ3 protein; structure 29.0 21 0.00071 26.0 1.4 31 250-280 21-57 (82)
150 3po0_A Small archaeal modifier 28.8 24 0.00082 25.5 1.7 26 74-101 60-85 (89)
151 2e5r_A Dystrobrevin alpha; ZZ 28.5 23 0.00078 24.3 1.4 30 251-280 12-44 (63)
152 2cu3_A Unknown function protei 28.3 24 0.00082 23.9 1.5 26 75-100 32-59 (64)
153 1wgk_A Riken cDNA 2900073H19 p 27.3 16 0.00055 28.3 0.5 27 75-101 76-104 (114)
154 2dip_A Zinc finger SWIM domain 27.1 20 0.0007 27.0 1.1 31 250-280 31-64 (98)
155 3dwg_C 9.5 kDa culture filtrat 26.2 24 0.00083 25.7 1.4 26 75-100 61-88 (93)
156 2qjl_A URM1, ubiquitin-related 25.9 31 0.0011 25.6 1.9 26 75-100 67-94 (99)
157 2q5w_D Molybdopterin convertin 25.7 34 0.0012 23.8 2.0 25 74-100 48-72 (77)
158 1loi_A Cyclic 3',5'-AMP specif 25.7 13 0.00044 20.3 -0.2 17 288-304 4-20 (26)
159 2yqq_A Zinc finger HIT domain- 24.4 30 0.001 23.4 1.3 20 252-272 14-33 (56)
160 2g1e_A Hypothetical protein TA 24.3 26 0.0009 25.2 1.2 26 75-100 58-85 (90)
161 3zyq_A Hepatocyte growth facto 24.2 42 0.0014 29.1 2.7 32 130-161 163-197 (226)
162 2ee8_A Protein ODD-skipped-rel 24.0 28 0.00095 25.2 1.3 15 287-301 71-85 (106)
163 3shb_A E3 ubiquitin-protein li 23.7 46 0.0016 23.8 2.4 40 252-299 12-51 (77)
164 1wff_A Riken cDNA 2810002D23 p 23.3 90 0.0031 22.8 3.9 24 289-313 40-63 (85)
165 1wd2_A Ariadne-1 protein homol 23.1 87 0.003 21.1 3.6 22 252-276 8-29 (60)
166 1m3v_A FLIN4, fusion of the LI 22.8 40 0.0014 25.9 2.1 48 130-184 31-81 (122)
167 1fm0_D Molybdopterin convertin 22.7 38 0.0013 23.7 1.8 25 75-101 53-77 (81)
168 1wg2_A Zinc finger (AN1-like) 22.5 1.3E+02 0.0043 20.8 4.3 21 289-310 29-49 (64)
169 1vjk_A Molybdopterin convertin 22.5 31 0.001 25.6 1.3 24 75-100 70-93 (98)
170 2ct7_A Ring finger protein 31; 22.0 36 0.0012 24.6 1.6 13 290-302 44-56 (86)
171 2lt7_A Transcriptional regulat 21.9 17 0.00058 28.5 -0.3 15 287-301 76-90 (133)
172 2k16_A Transcription initiatio 21.8 67 0.0023 22.3 3.0 45 247-297 15-67 (75)
173 1bbo_A Human enhancer-binding 21.4 21 0.00073 22.4 0.2 14 287-300 27-40 (57)
174 1tyg_B YJBS; alpha beta barrel 21.2 39 0.0013 24.7 1.6 26 75-100 55-82 (87)
175 2i13_A AART; DNA binding, zinc 21.1 26 0.0009 28.5 0.7 42 129-183 19-60 (190)
176 2kmk_A Zinc finger protein GFI 20.8 20 0.0007 24.4 -0.0 13 287-299 55-67 (82)
177 3uk3_C Zinc finger protein 217 20.6 23 0.0008 22.2 0.2 13 287-299 30-42 (57)
178 3hvz_A Uncharacterized protein 20.6 50 0.0017 23.6 2.0 26 73-100 42-67 (78)
179 1wfh_A Zinc finger (AN1-like) 20.5 1.4E+02 0.0048 20.6 4.2 22 289-311 29-50 (64)
180 1ryj_A Unknown; beta/alpha pro 20.3 60 0.0021 22.3 2.4 24 75-100 42-65 (70)
No 1
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=99.80 E-value=1.2e-19 Score=153.44 Aligned_cols=104 Identities=18% Similarity=0.226 Sum_probs=85.8
Q ss_pred CCCccccEEEEeCCCCCceeEeeCCceEEec----ccccCC-c---------cccceEEEEEeCCC---CeEEEEeccCC
Q 019461 11 KPSREIWAKLEPSDSRFADVDISSNEVVICS----EITSSS-S---------DKHEWCKITRNSDL---HSAKMQNKSSN 73 (340)
Q Consensus 11 ~~~~~~~~~L~~~~~~~~~~~l~~~~~~iGr----~~~~~~-~---------vS~~H~~i~~~~~~---~~~~i~D~StN 73 (340)
++.+..||+|+++.+..+.+.|.++.++||| ++.+++ . |||.||+|.++.+. ..|+|+|+|+|
T Consensus 24 ~~~~~~w~~L~~~~~~~~~i~L~~~~~~IGR~~~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~~~~~~~~i~D~StN 103 (149)
T 1gxc_A 24 EPTPAPWARLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGN 103 (149)
T ss_dssp -----CCEEEEECSTTCCCEEECSSEEEEESSTTCSEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEEECCSS
T ss_pred CCCCCeeEEEEEcCCCCceEEECCCCEEecCCCCCCEEECCccccccccCCcCchhheEEEEECCCCceeEEEEEECCCC
Confidence 4455689999999988899999999999999 677776 3 99999999998652 25999999999
Q ss_pred ceEeccEecCCCceeeccCCCeeccCCCCcceecccccccccc
Q 019461 74 AILVDDTMVQNEEVVDIKCGTEIIPGPDREVYLNFRFKVVPVQ 116 (340)
Q Consensus 74 gt~vng~~i~~~~~~~l~~gd~I~lg~~~~~~~~y~f~i~s~~ 116 (340)
||||||++|.+++.+.|.+||+|.+|.. ....|.|..+...
T Consensus 104 GT~VNg~~i~~~~~~~L~~GD~I~lG~~--~~~~f~f~d~~~~ 144 (149)
T 1gxc_A 104 GTFVNTELVGKGKRRPLNNNSEIALSLS--RNKVFVFFDLTVD 144 (149)
T ss_dssp CEEETTEECCTTCEEECCTTEEEEESST--TCEEEEEEETTCC
T ss_pred CeEECCEECCCCCeEECCCCCEEEECCC--CCeEEEEEECCcc
Confidence 9999999999999999999999999984 3566777655543
No 2
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=99.75 E-value=2.5e-18 Score=139.23 Aligned_cols=101 Identities=12% Similarity=0.231 Sum_probs=84.7
Q ss_pred cccEEEEeCCC--CCceeEeeCCceEEec----ccccCC--ccccceEEEEEeCCCCeEEEEeccCCceEeccEecCCCc
Q 019461 15 EIWAKLEPSDS--RFADVDISSNEVVICS----EITSSS--SDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNEE 86 (340)
Q Consensus 15 ~~~~~L~~~~~--~~~~~~l~~~~~~iGr----~~~~~~--~vS~~H~~i~~~~~~~~~~i~D~StNgt~vng~~i~~~~ 86 (340)
++||+|+++++ ....+.|.++.++||| ++.+++ .||+.||+|.++..+..|+|+|.|+|||||||+++.++.
T Consensus 2 ~~wg~L~~~~~~~~~~~~~l~~~~~~iGR~~~~di~l~~~~~vSr~Ha~i~~~~~~~~~~l~D~S~NGt~vng~~l~~~~ 81 (116)
T 1lgp_A 2 QPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDHCRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQ 81 (116)
T ss_dssp CCCEEECCTTCCSSSCCEEECSSEEEEESSTTSSEECTTCTTSCTTCEEEEECTTTCCEEEEECSSSCCCCCCCCCCCSS
T ss_pred CCEEEEEEeCCCCCccEEEECCCCEEECCCCCCCEEeCCCCCCChhHeEEEEECCCCeEEEEECCcCCcEECCEEcCCCC
Confidence 57999999875 4567899999999999 677764 899999999997434469999999999999999999998
Q ss_pred eeeccCCCeeccCCCCc---ceeccccccccc
Q 019461 87 VVDIKCGTEIIPGPDRE---VYLNFRFKVVPV 115 (340)
Q Consensus 87 ~~~l~~gd~I~lg~~~~---~~~~y~f~i~s~ 115 (340)
.+.|.+||+|.+|.... ..+.|.|.....
T Consensus 82 ~~~L~~GD~i~~G~~~~~~~~~~~f~f~~~~~ 113 (116)
T 1lgp_A 82 TCPLQTGDVIYLVYRKNEPEHNVAYLYESLSE 113 (116)
T ss_dssp CCCCCTTCEEEEECCSSCGGGCEEEECCCSCC
T ss_pred cEECCCCCEEEEeccCCCCCceEEEEEEcccc
Confidence 99999999999997532 256777776654
No 3
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.70 E-value=5.7e-17 Score=133.35 Aligned_cols=99 Identities=13% Similarity=0.122 Sum_probs=84.2
Q ss_pred cccEEEEeCCCCCceeEeeCC-------------ceEEec----ccccCC--ccccceEEEEEeCCCCeEEEEeccCCce
Q 019461 15 EIWAKLEPSDSRFADVDISSN-------------EVVICS----EITSSS--SDKHEWCKITRNSDLHSAKMQNKSSNAI 75 (340)
Q Consensus 15 ~~~~~L~~~~~~~~~~~l~~~-------------~~~iGr----~~~~~~--~vS~~H~~i~~~~~~~~~~i~D~StNgt 75 (340)
.+|++|++..+.++.+.|..+ .++||| ++.+++ .||+.||+|.++.+ ..|+|+|+|+|||
T Consensus 3 ~~~~~L~~~~~~~p~~~l~~~~~~i~~~~~~~~~~~~IGR~~~~di~l~~~~~vSr~Ha~i~~~~~-g~~~l~DlS~NGT 81 (127)
T 1g6g_A 3 NIVCRVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGED-GNLLLNDISTNGT 81 (127)
T ss_dssp EEEEEEEESSSSSCCEEEEECHHHHHHCCSSCCEEEEEESSTTSSEECCSCTTSCSSCEEEEECTT-SCEEEEECCSSCC
T ss_pred ceEEEEEECCCCCCceEeeccccceeeeeecCCCCEEECCCCCCCEEeCCCCCCChhHeEEEECCC-CcEEEEECCcCCe
Confidence 589999999999999998777 899999 677877 59999999999522 2599999999999
Q ss_pred EeccEecCCCceeeccCCCeeccCCCC-cceecccccccc
Q 019461 76 LVDDTMVQNEEVVDIKCGTEIIPGPDR-EVYLNFRFKVVP 114 (340)
Q Consensus 76 ~vng~~i~~~~~~~l~~gd~I~lg~~~-~~~~~y~f~i~s 114 (340)
||||+++..++.+.|.+||+|.+|... ...+.|.|....
T Consensus 82 ~vNg~~l~~~~~~~L~~Gd~I~lG~~~~~~~i~f~~~~~~ 121 (127)
T 1g6g_A 82 WLNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVIFIND 121 (127)
T ss_dssp EETTEECCTTCCEECCTTCEEEECTTSGGGCEEEEEEECH
T ss_pred EECCEEcCCCCeEEcCCCCEEEECCCccCceEEEEEEeCc
Confidence 999999999989999999999999864 345566666543
No 4
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=99.69 E-value=6.4e-17 Score=137.01 Aligned_cols=89 Identities=15% Similarity=0.129 Sum_probs=75.3
Q ss_pred CCCccccEEEEeCCC-CCceeEeeC-CceEEec----ccccCC-ccccceEEEEEe----C--CCCeEEEEeccCCceEe
Q 019461 11 KPSREIWAKLEPSDS-RFADVDISS-NEVVICS----EITSSS-SDKHEWCKITRN----S--DLHSAKMQNKSSNAILV 77 (340)
Q Consensus 11 ~~~~~~~~~L~~~~~-~~~~~~l~~-~~~~iGr----~~~~~~-~vS~~H~~i~~~----~--~~~~~~i~D~StNgt~v 77 (340)
++....||+|+.+.. ....+.|.. +.++||| +|.+++ .||+.||+|.+. + ++..|+|+|+|+|||||
T Consensus 12 ~~~~~~~~~L~~~~~~~g~~~~l~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~DlS~NGT~V 91 (151)
T 2jqj_A 12 SSEYTCLGHLVNLIPGKEQKVEITNRNVTTIGRSRSCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNGTFI 91 (151)
T ss_dssp SSSCCEEEEEEEEETTEEEEEEEECCSCEEEESSTTSSEECCCTTCCTTSEEEEEEEEEETTEEEEEEEEEECCSSCEEE
T ss_pred CCCCCceEEEEEecCCCceEEEEcCCCeEEeCCCCCCCEEECCCCCccccCEEEEecccCCcCcCCEEEEEECCCCCeEE
Confidence 345569999998765 455678874 8899999 688888 999999999992 1 23459999999999999
Q ss_pred ccEecCCCceeeccCCCeeccCC
Q 019461 78 DDTMVQNEEVVDIKCGTEIIPGP 100 (340)
Q Consensus 78 ng~~i~~~~~~~l~~gd~I~lg~ 100 (340)
||++|..+ .+.|.+||+|.+|.
T Consensus 92 Ng~~i~~~-~~~L~~GD~I~lG~ 113 (151)
T 2jqj_A 92 NGNRLVKK-DYILKNGDRIVFGK 113 (151)
T ss_dssp TTEECCSS-CEEECSSEEEEETT
T ss_pred CCEEcCCC-ceECCCCCEEEECC
Confidence 99999988 89999999999998
No 5
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=99.62 E-value=8.7e-16 Score=126.98 Aligned_cols=88 Identities=11% Similarity=0.003 Sum_probs=76.1
Q ss_pred CccccEEEEeCCCCC---ceeEeeCCceEEec----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEe--
Q 019461 13 SREIWAKLEPSDSRF---ADVDISSNEVVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTM-- 81 (340)
Q Consensus 13 ~~~~~~~L~~~~~~~---~~~~l~~~~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~-- 81 (340)
..+.||+|+-+.+.. ..+.|..+.++||| +|.+++ .||+.||+|.++.++..|+|+|+ |+|||||||++
T Consensus 20 ~~~p~g~L~v~~g~~~~g~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~i~~~~~~~~~~l~Dl~S~NGT~vNg~~i~ 99 (132)
T 3va4_A 20 HMEPIGQLRLFSGTHGPERDFPLYLGKNVVGRSPDCSVALPFPSISKQHAVIEISAWNKAPILQDCGSLNGTQIVKPPRV 99 (132)
T ss_dssp CCCCSEEEEECCBTTBSCEEEEECSEEEEEESSTTSSEECCCTTSCTTCEEEEECSTTSCCEEEECSCSSCEEETTTTEE
T ss_pred cCCCcEEEEEEeCCCCCceEEEECCCCEEEccCCCCCEEeCCCCcChhHEEEEEEcCCCEEEEEECCCCCCeEECCEEcc
Confidence 446899999877644 56789999999999 688888 99999999999754446999999 99999999998
Q ss_pred cCCCceeeccCCCeeccCC
Q 019461 82 VQNEEVVDIKCGTEIIPGP 100 (340)
Q Consensus 82 i~~~~~~~l~~gd~I~lg~ 100 (340)
+..+..+.|++||+|.+|.
T Consensus 100 l~~~~~~~L~~GD~I~lG~ 118 (132)
T 3va4_A 100 LPPGVSHRLRDQELILFAD 118 (132)
T ss_dssp ECTTCCEECCTTCEEEETT
T ss_pred cCCCCEEECCCCCEEEECC
Confidence 6777889999999999997
No 6
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.61 E-value=2.3e-15 Score=122.06 Aligned_cols=87 Identities=18% Similarity=0.137 Sum_probs=74.1
Q ss_pred CccccEEEEeCCCC--CceeEeeC-CceEEec-----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEec
Q 019461 13 SREIWAKLEPSDSR--FADVDISS-NEVVICS-----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMV 82 (340)
Q Consensus 13 ~~~~~~~L~~~~~~--~~~~~l~~-~~~~iGr-----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i 82 (340)
.+.++.+|+...+. ...+.|.. ..++||| ++.+++ .||+.||+|.++++. |+|+|+ |+|||||||+++
T Consensus 8 ~~~p~l~L~v~~g~~~g~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~~~--~~l~Dl~S~nGT~vng~~l 85 (118)
T 1uht_A 8 MVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDSGN--WVIQDLGSSNGTLLNSNAL 85 (118)
T ss_dssp CCSCEEEEEESSSTTTTCBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEECSSS--EEEECCCCSSCCEESSSBC
T ss_pred CCCCeEEEEEEeCCCCCcEEEECCCCEEEEcCCCCCCCEEeCCCCCchHHeEEEEECCE--EEEEECCCCCCeEECCEEC
Confidence 44578888887653 34667876 5799999 467777 999999999998665 999999 999999999999
Q ss_pred CCCceeeccCCCeeccCCC
Q 019461 83 QNEEVVDIKCGTEIIPGPD 101 (340)
Q Consensus 83 ~~~~~~~l~~gd~I~lg~~ 101 (340)
..+..+.|.+||+|.+|..
T Consensus 86 ~~~~~~~L~~gd~i~lG~~ 104 (118)
T 1uht_A 86 DPETSVNLGDGDVIKLGEY 104 (118)
T ss_dssp CTTCEEECCTTEEEEETTT
T ss_pred CCCCeEEcCCCCEEEECCe
Confidence 9988999999999999984
No 7
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=124.74 Aligned_cols=83 Identities=10% Similarity=0.135 Sum_probs=65.0
Q ss_pred EEEeCCCC--CceeEeeCCc-eEEec----ccccCC-ccccceEEEEEe---------CCCCeEEEEec-cCCceEeccE
Q 019461 19 KLEPSDSR--FADVDISSNE-VVICS----EITSSS-SDKHEWCKITRN---------SDLHSAKMQNK-SSNAILVDDT 80 (340)
Q Consensus 19 ~L~~~~~~--~~~~~l~~~~-~~iGr----~~~~~~-~vS~~H~~i~~~---------~~~~~~~i~D~-StNgt~vng~ 80 (340)
+|..+.++ ...+.|.+.. ++||| ||.+++ .|||.||.|.+. .....|+|+|| |+|||||||+
T Consensus 22 ~L~v~k~g~~~~~~~L~~~~~~~IGR~~~~di~l~~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~Dl~StNGT~vNg~ 101 (130)
T 4h87_A 22 SLETLKGGTILGTRSLKGTSYCLFGRLSGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHGTFLNKT 101 (130)
T ss_dssp EEEEEETTEEEEEEECTTCSEEEEESSTTSSEECCCTTSCSSCEEEEEBCCCCCC------CCEEEEECSCSSCEEETTE
T ss_pred EEEEEECCeeeeeEEeCCCceEEEcCCcCCCEEeCCCCcchhcEEEEEecccCccceeccCCcceEeeCCCCCceEECCE
Confidence 45444332 2345675544 79999 788888 999999999653 22335999999 9999999999
Q ss_pred ecCCCceeeccCCCeeccCCC
Q 019461 81 MVQNEEVVDIKCGTEIIPGPD 101 (340)
Q Consensus 81 ~i~~~~~~~l~~gd~I~lg~~ 101 (340)
+|..+..+.|++||+|.+|..
T Consensus 102 ri~~~~~~~L~~GD~I~~G~s 122 (130)
T 4h87_A 102 RIPPRTYCRVHVGHVVRFGGS 122 (130)
T ss_dssp ECCTTCCEECCTTCEEEETTC
T ss_pred ECCCCceeECCCCCEEEECCc
Confidence 999998999999999999974
No 8
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=99.59 E-value=3.7e-15 Score=127.04 Aligned_cols=96 Identities=13% Similarity=0.114 Sum_probs=76.2
Q ss_pred cccEEEEeCCCC--CceeEeeCCc--eEEec----ccccCC-ccccceEEEEEeCCC-------------CeEEEEeccC
Q 019461 15 EIWAKLEPSDSR--FADVDISSNE--VVICS----EITSSS-SDKHEWCKITRNSDL-------------HSAKMQNKSS 72 (340)
Q Consensus 15 ~~~~~L~~~~~~--~~~~~l~~~~--~~iGr----~~~~~~-~vS~~H~~i~~~~~~-------------~~~~i~D~St 72 (340)
..|-.|.|.... ...+.|..+. ++||| ++.+++ .||+.||+|.++... ..|+|+|+|+
T Consensus 3 g~~l~L~p~~~~~~~~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~DlSt 82 (158)
T 1dmz_A 3 GRFLTLKPLPDSIIQESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGT 82 (158)
T ss_dssp SCCEEEEECTTSSCCCCEEETTSCSCEEEESSTTSSEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEECST
T ss_pred ceEEEEEeCCCCccceEEEEcCCCceEEECCCCCCCEEeCCCCcChHHeEEEEecCccccccccccccccccEEEEECCc
Confidence 357788887763 3557887766 99999 688888 999999999987510 4699999999
Q ss_pred CceEeccEecCCCceeeccCCCeeccCCCCcceecccc
Q 019461 73 NAILVDDTMVQNEEVVDIKCGTEIIPGPDREVYLNFRF 110 (340)
Q Consensus 73 Ngt~vng~~i~~~~~~~l~~gd~I~lg~~~~~~~~y~f 110 (340)
|||||||++|.++..+.|.+||+|.++.+..+...+.|
T Consensus 83 NGT~VNg~ri~~~~~~~L~~GD~I~l~~d~~G~~~l~f 120 (158)
T 1dmz_A 83 NVSYLNNNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGF 120 (158)
T ss_dssp TCCEETTEECCSSEEEECCSSCCEESCCCTTTTCCCCE
T ss_pred CCeEECCEEcCCCceEEcCCCCEEEEeecCCCCEEEEE
Confidence 99999999999999999999999999544333333333
No 9
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=99.58 E-value=6.1e-15 Score=122.93 Aligned_cols=97 Identities=16% Similarity=0.212 Sum_probs=77.9
Q ss_pred cccEEEEeCCCCCceeEee-CCceEEec----ccccCC-c----cccceEEEEEeCCCCeEEEEec-cCCceEeccEecC
Q 019461 15 EIWAKLEPSDSRFADVDIS-SNEVVICS----EITSSS-S----DKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQ 83 (340)
Q Consensus 15 ~~~~~L~~~~~~~~~~~l~-~~~~~iGr----~~~~~~-~----vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~ 83 (340)
..| .|+........+.|. +..++||| ++.+++ . ||+.||+|.++.+ ..|+|+|+ |+|||||||+++.
T Consensus 8 ~~w-~l~~~G~~~~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~~-g~~~l~Dl~S~NGT~vNg~~l~ 85 (138)
T 2pie_A 8 RSW-CLRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPE-GQWTIMDNKSLNGVWLNRARLE 85 (138)
T ss_dssp EEE-EEEETTCSSCBEEECTTCCEEEESSSSSSEECCCSSCTTSSCSSCEEEEECTT-SCEEEEECSCSSCEEETTEECC
T ss_pred ccE-EEEEeCCCCCEEEecCCCeEEECCCCCCCEEeCCCCcCCCCChhHeEEEEcCC-CcEEEEECCCCCCeEECCEEcC
Confidence 467 477777666778886 67899999 678887 6 9999999998432 25999999 9999999999999
Q ss_pred CCceeeccCCCeeccCCCCc--ceeccccccc
Q 019461 84 NEEVVDIKCGTEIIPGPDRE--VYLNFRFKVV 113 (340)
Q Consensus 84 ~~~~~~l~~gd~I~lg~~~~--~~~~y~f~i~ 113 (340)
.++.+.|.+||+|.+|.... ....|.|...
T Consensus 86 ~~~~~~L~~GD~I~lG~~~~~~~~~~f~~~~~ 117 (138)
T 2pie_A 86 PLRVYSIHQGDYIQLGVPLENKENAEYEYEVT 117 (138)
T ss_dssp TTCCEECCTTCEEEESCCCTTCSSCSEEEEEE
T ss_pred CCCcEECCCCCEEEECCCCCCCceEEEEEEec
Confidence 99999999999999998532 2345555443
No 10
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.58 E-value=1.9e-15 Score=131.49 Aligned_cols=87 Identities=13% Similarity=0.105 Sum_probs=73.2
Q ss_pred ccccEEEEeCCCC--CceeEeeCCc--eEEec----ccccCC-ccccceEEEEEeCC-------------CCeEEEEecc
Q 019461 14 REIWAKLEPSDSR--FADVDISSNE--VVICS----EITSSS-SDKHEWCKITRNSD-------------LHSAKMQNKS 71 (340)
Q Consensus 14 ~~~~~~L~~~~~~--~~~~~l~~~~--~~iGr----~~~~~~-~vS~~H~~i~~~~~-------------~~~~~i~D~S 71 (340)
...|..|.|..+. ...+.|..+. ++||| +|.+++ .||+.||+|.++.. ...|+|+|+|
T Consensus 26 ~g~~l~L~~~~~~~~~~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l~DlS 105 (182)
T 1qu5_A 26 NGRFLTLKPLPDSIIQESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTG 105 (182)
T ss_dssp SSCCEEECCCTTSSSCSCCCBTTCCSSEEESSSTTSSSCCCCTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEECCCS
T ss_pred CccEEEEEeCCCCCcceEEEEcCCCceEEECCCCCCCEEECCCCcChHHeEEEEecCccccccccccccccceEEEEECC
Confidence 3468888887763 3556887776 99999 688888 99999999998751 0469999999
Q ss_pred CCceEeccEecCCCceeeccCCCeeccCC
Q 019461 72 SNAILVDDTMVQNEEVVDIKCGTEIIPGP 100 (340)
Q Consensus 72 tNgt~vng~~i~~~~~~~l~~gd~I~lg~ 100 (340)
+|||||||++|.++..+.|.+||+|.++.
T Consensus 106 tNGT~VNg~ri~~~~~~~L~~GD~I~l~~ 134 (182)
T 1qu5_A 106 TNVSYLNNNRMIQGTKFLLQDGDEIKIIW 134 (182)
T ss_dssp SSCCEETTEECCSSEEEECCTTBCCEEEE
T ss_pred cCCeEECCEEcCCCcceEcCCCCEEEEEE
Confidence 99999999999999999999999999943
No 11
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=99.58 E-value=8.9e-15 Score=125.43 Aligned_cols=100 Identities=10% Similarity=0.069 Sum_probs=79.8
Q ss_pred CccccEEEEeCCCCCcee--EeeCC-----------ceEEec----ccccCC--ccccceEEEEEe-CCCCeEEEEeccC
Q 019461 13 SREIWAKLEPSDSRFADV--DISSN-----------EVVICS----EITSSS--SDKHEWCKITRN-SDLHSAKMQNKSS 72 (340)
Q Consensus 13 ~~~~~~~L~~~~~~~~~~--~l~~~-----------~~~iGr----~~~~~~--~vS~~H~~i~~~-~~~~~~~i~D~St 72 (340)
++..|++|+...+..... .|..+ .++||| +|.+++ .||+.||+|.++ ++ .|+|+|+|+
T Consensus 29 ~~~~~~~L~v~~G~~~g~~~~l~~~~v~~~~~~~~~~~~IGR~~~~di~l~d~~~vSr~Ha~I~~~~~g--~~~l~DlS~ 106 (164)
T 1g3g_A 29 GENIVCRVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGEDG--NLLLNDIST 106 (164)
T ss_dssp CSSCCEEEECSSSSSCCEEECCCHHHHHHCSSSCCEEEEEESSSSSSEECCCCTTTTSSCEEEEECSTT--CEEEEECCS
T ss_pred CCCccEEEEEecCCCCCeEEEeccccccccccccCCcEEECCCCCCCEEeCCcCCcChhHEEEEECCCC--CEEEEECCC
Confidence 445799999988865554 44422 789999 678877 599999999995 44 599999999
Q ss_pred CceEeccEecCCCceeeccCCCeeccCCCC-cceecccccccc
Q 019461 73 NAILVDDTMVQNEEVVDIKCGTEIIPGPDR-EVYLNFRFKVVP 114 (340)
Q Consensus 73 Ngt~vng~~i~~~~~~~l~~gd~I~lg~~~-~~~~~y~f~i~s 114 (340)
|||||||+++..+..+.|.+||+|.+|... ...+.|.|....
T Consensus 107 NGT~vNg~~i~~~~~~~L~~GD~I~iG~~~~~~~~~f~~~~~~ 149 (164)
T 1g3g_A 107 NGTWLNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVIFIND 149 (164)
T ss_dssp SCEEETTEEECTTEEEECCTTCEEEESCSSTTSCEEEEEEECH
T ss_pred CCeEECCEEcCCCCceEcCCCCEEEECCCCCCCcEEEEEEeCc
Confidence 999999999999989999999999999853 234566665554
No 12
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=99.58 E-value=5.4e-15 Score=122.12 Aligned_cols=92 Identities=21% Similarity=0.177 Sum_probs=69.4
Q ss_pred ccCCCCCccccEEEEeCCC-CCceeEeeCCceEEec----ccccCC-ccccceEEEEEeCCC---CeEEEEec------c
Q 019461 7 CSASKPSREIWAKLEPSDS-RFADVDISSNEVVICS----EITSSS-SDKHEWCKITRNSDL---HSAKMQNK------S 71 (340)
Q Consensus 7 ~~~~~~~~~~~~~L~~~~~-~~~~~~l~~~~~~iGr----~~~~~~-~vS~~H~~i~~~~~~---~~~~i~D~------S 71 (340)
|++.++.+..|+.|+-.++ ....+.|.++.++||| +|.+++ .||+.||+|.+..+. ..|+|+|+ |
T Consensus 1 m~~p~~~p~~~~~lvv~~~~~~~~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~l~Dl~~~~~~S 80 (131)
T 3hx1_A 1 MSDPSAKPLQEHILIILDDAGRREVLLTETFYTIGRSPRADIRIKSQFVSRIHAVLVRKSSDDVQAAYRIIDGDEDGQSS 80 (131)
T ss_dssp --------CCEEEEEEEETTEEEEEEECSSEEEEESSTTSSEECCCSSSCTTCEEEEEC------CCEEEEESCTTSCCC
T ss_pred CCCCCCCCCcceEEEEECCCCcEEEEECCCCEEECCCCCCCEEECCCCcChhheEEEEEccCCCceEEEEEECCCCCCCC
Confidence 3455556667777776544 3456689999999999 688888 999999999987321 24999998 9
Q ss_pred CCceEeccEecCCCceeeccCCCeeccCCC
Q 019461 72 SNAILVDDTMVQNEEVVDIKCGTEIIPGPD 101 (340)
Q Consensus 72 tNgt~vng~~i~~~~~~~l~~gd~I~lg~~ 101 (340)
+|||||||+++.. +.|.+||+|.+|..
T Consensus 81 ~NGT~vNg~~i~~---~~L~~GD~I~iG~~ 107 (131)
T 3hx1_A 81 VNGLMINGKKVQE---HIIQTGDEIVMGPQ 107 (131)
T ss_dssp SSCEEETTEEESE---EECCTTCEEECSTT
T ss_pred CCceEECCEEeEe---EECCCCCEEEECCE
Confidence 9999999999985 89999999999983
No 13
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.55 E-value=5e-15 Score=114.51 Aligned_cols=72 Identities=24% Similarity=0.499 Sum_probs=61.9
Q ss_pred cccCCceeccccccccCccEeCC-CCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc---ccCcchHHHHHHHHHHHhc
Q 019461 127 IDIEHAKCCICLNIWHDVVTVAP-CLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ---FVGRNHYLHNIEQSILQAH 202 (340)
Q Consensus 127 ~~~e~l~C~IC~~~~~~Pv~l~p-CgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~---~~~~n~~l~~lve~~~~~~ 202 (340)
...+++.|+||+++|.+|+++ + |||+||..||.+|+.... ...||.||..+. .+..|..+.++++.+....
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~----~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~ 83 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVI-PCCGNSYCDECIRTALLESD----EHTCPTCHQNDVSPDALIANKFLRQAVNNFKNET 83 (92)
T ss_dssp CCCTTTEETTTTEECSSCEEC-TTTCCEECHHHHHHHHHHCT----TCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHH
T ss_pred cCCcCCCCCCCChhhcCceEC-CCCCCHHHHHHHHHHHHhcC----CCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHH
Confidence 345789999999999999998 9 999999999999997542 368999999974 2789999999999988765
Q ss_pred c
Q 019461 203 S 203 (340)
Q Consensus 203 ~ 203 (340)
.
T Consensus 84 ~ 84 (92)
T 3ztg_A 84 G 84 (92)
T ss_dssp T
T ss_pred h
Confidence 4
No 14
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=99.53 E-value=1.4e-14 Score=120.95 Aligned_cols=82 Identities=10% Similarity=0.124 Sum_probs=68.1
Q ss_pred EEeCCCCC--ceeEeeCCc-eEEec-----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCCCceee
Q 019461 20 LEPSDSRF--ADVDISSNE-VVICS-----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQNEEVVD 89 (340)
Q Consensus 20 L~~~~~~~--~~~~l~~~~-~~iGr-----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~~~~~~ 89 (340)
|+.+.+.. ..+.|.++. ++||| +|.+++ .||+.||+|.++.....|+|+|+ |+|||||||++|.++..+.
T Consensus 37 L~v~~g~~~g~~~~l~~~~~~~IGR~~~~~di~l~d~~VSr~Ha~i~~~~~~~~~~l~Dl~S~NGT~vNg~~l~~~~~~~ 116 (140)
T 2jpe_A 37 LDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQ 116 (140)
T ss_dssp EEEESSSSEEEEECCSSCSBCCBSSCTTTSSSCCCCSSSCTTSBEEEEBSSSCCEEEECCSCSSCEESSSCEECSSSCCE
T ss_pred EEEEcCCCcceEEEeCCCCeEEecCCCccCCEEeCCCCcChhheEEEEECCCCcEEEEECCCCCCeEECCEECCCCccEE
Confidence 65555432 356777754 99999 477777 99999999999873345999999 9999999999999988999
Q ss_pred ccCCCeeccCCC
Q 019461 90 IKCGTEIIPGPD 101 (340)
Q Consensus 90 l~~gd~I~lg~~ 101 (340)
|.+||+|.+|..
T Consensus 117 L~~gd~i~~G~~ 128 (140)
T 2jpe_A 117 IPIDSTVSFGAS 128 (140)
T ss_dssp ECTTCCBBCSSC
T ss_pred CCCCCEEEECCc
Confidence 999999999974
No 15
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=99.53 E-value=2.7e-14 Score=112.34 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=69.8
Q ss_pred ccEEEEeCCCCCceeEeeCCceEEec----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCCCceee
Q 019461 16 IWAKLEPSDSRFADVDISSNEVVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQNEEVVD 89 (340)
Q Consensus 16 ~~~~L~~~~~~~~~~~l~~~~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~~~~~~ 89 (340)
..+.|.-.++....+.|.++.++||| ++.+++ .||+.||+|.++++. |+|+|+ |+|||||||+++. .+.
T Consensus 4 ~~~~l~~~~g~g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~~~~--~~l~Dl~S~nGt~vng~~i~---~~~ 78 (100)
T 3po8_A 4 TSVTLQLDDGSGRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWDGQV--ALLADLNSTNGTTVNNAPVQ---EWQ 78 (100)
T ss_dssp EEEEEEECSSSCCEEECCSEEEEEESSTTCSEECCCTTSCSSCEEEEECSSC--EEEEECSCSSCCEETTEECS---EEE
T ss_pred cEEEEEEECCCCcEEEECCCCEEEeCCCCCCEECCCCCcChhhCEEEEeCCE--EEEEECCCCCCEEECCEECc---eEE
Confidence 34566666666777899999999999 688888 999999999998665 999999 9999999999997 679
Q ss_pred ccCCCeeccCC
Q 019461 90 IKCGTEIIPGP 100 (340)
Q Consensus 90 l~~gd~I~lg~ 100 (340)
|.+||+|.+|.
T Consensus 79 L~~gd~i~iG~ 89 (100)
T 3po8_A 79 LADGDVIRLGH 89 (100)
T ss_dssp CCTTCEEEETT
T ss_pred CCCCCEEEECC
Confidence 99999999997
No 16
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.53 E-value=4.1e-14 Score=118.03 Aligned_cols=88 Identities=18% Similarity=0.196 Sum_probs=74.0
Q ss_pred ccccEEEEeCCCC--CceeEeeCC-----ceEEec----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccE
Q 019461 14 REIWAKLEPSDSR--FADVDISSN-----EVVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDT 80 (340)
Q Consensus 14 ~~~~~~L~~~~~~--~~~~~l~~~-----~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~ 80 (340)
...++.|+-+.+. ...+.|..+ .++||| +|.+++ .||+.||+|.++.+...|+|+|+ |+|||||||+
T Consensus 4 ~~~~~~L~v~~G~~~g~~~~l~~~~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~i~~~~~~~~~~l~DlgS~NGT~vNg~ 83 (139)
T 1mzk_A 4 GSSWLFLEVIAGPAIGLQHAVNSTSSSKLPVKLGRVSPSDLALKDSEVSGKHAQITWNSTKFKWELVDMGSLNGTLVNSH 83 (139)
T ss_dssp CSEEEEEEECSSTTCSCEEEECTTCSTTCSEEEESSSSCSEECCCTTSSSEEEEEEEETTTTEEEEEETTCSSCCEETTE
T ss_pred CCCeEEEEEEeCCCCCeEEEecCCCCccceEEeeCCCCCCEEeCCCCCChHHcEEEEECCCCEEEEEECCCCCCEEECCE
Confidence 4567778777653 345678765 799999 688888 99999999999987567999999 9999999999
Q ss_pred ecCC--------CceeeccCCCeeccCCC
Q 019461 81 MVQN--------EEVVDIKCGTEIIPGPD 101 (340)
Q Consensus 81 ~i~~--------~~~~~l~~gd~I~lg~~ 101 (340)
++.. +..+.|.+||+|.+|..
T Consensus 84 ~i~~~~~~~~~~~~~~~L~~GD~I~iG~~ 112 (139)
T 1mzk_A 84 SISHPDLGSRKWGNPVELASDDIITLGTT 112 (139)
T ss_dssp ESSCCCTTTCCCCCCEECCTTEEEECSSS
T ss_pred ECcCcccccccCCceEECCCCCEEEECCE
Confidence 9985 67899999999999973
No 17
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=99.53 E-value=3e-14 Score=119.73 Aligned_cols=99 Identities=15% Similarity=0.188 Sum_probs=76.0
Q ss_pred CccccEEEEeCCCCCceeEe-eCCceEEec----ccccCC-c----cccceEEEEEeCCCCeEEEEec-cCCceEeccEe
Q 019461 13 SREIWAKLEPSDSRFADVDI-SSNEVVICS----EITSSS-S----DKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTM 81 (340)
Q Consensus 13 ~~~~~~~L~~~~~~~~~~~l-~~~~~~iGr----~~~~~~-~----vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~ 81 (340)
....|..+ ........+.| .+..++||| ++.+++ . ||+.||+|.++.+ ..|+|+|+ |+|||||||++
T Consensus 14 ~~~~w~L~-~~G~~~~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~~-g~~~l~Dl~S~NGT~vNg~~ 91 (145)
T 2csw_A 14 GGRSWCLR-RVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPE-GQWTIMDNKSLNGVWLNRAR 91 (145)
T ss_dssp CSEEEEEC-CTTCSCCBEECCTTCCEEEESSTTSSEECCCSSCGGGSCTTCEEEEECTT-SCEEEEBSSCSSCEEESSCB
T ss_pred CCccEEEE-EeCCCCCeEEeCCCCcEEECCCCCCCEEECCCCcCCCCChhHeEEEEcCC-CeEEEEECCCCCCeEECCEE
Confidence 33478744 44444556666 456799999 688887 6 9999999999532 25999998 99999999999
Q ss_pred cCCCceeeccCCCeeccCCCCcc--eeccccccc
Q 019461 82 VQNEEVVDIKCGTEIIPGPDREV--YLNFRFKVV 113 (340)
Q Consensus 82 i~~~~~~~l~~gd~I~lg~~~~~--~~~y~f~i~ 113 (340)
+..++.+.|.+||+|.+|..... .+.|.|...
T Consensus 92 i~~~~~~~L~~GD~I~iG~~~~~g~~~~f~~~~~ 125 (145)
T 2csw_A 92 LEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVT 125 (145)
T ss_dssp CCBTCCEECCSSCCEEESCCCTTCSSCSCCCCEE
T ss_pred CCCCccEECCCCCEEEECCCCCCCceEEEEEEec
Confidence 99988999999999999985322 345555543
No 18
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.52 E-value=6.6e-15 Score=110.27 Aligned_cols=68 Identities=19% Similarity=0.348 Sum_probs=60.7
Q ss_pred cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhc
Q 019461 129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAH 202 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~ 202 (340)
.+++.|+||+++|.+|+++ +|||+||..||.+|+..+ ...||.||..+.. +.+|..|.++++.+++.+
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~-~CgH~fc~~Ci~~~~~~~-----~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~ 75 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIV-STGQTYERSSIQKWLDAG-----HKTCPKSQETLLHAGLTPNYVLKSLIALWCESN 75 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEE-TTTEEEEHHHHHHHHTTT-----CCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHS
T ss_pred cccCCCCCccccccCCEEc-CCCCeecHHHHHHHHHHC-----cCCCCCCcCCCChhhCccCHHHHHHHHHHHHHc
Confidence 4789999999999999999 999999999999999753 2689999999865 788999999999998764
No 19
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=99.51 E-value=7.9e-14 Score=112.52 Aligned_cols=83 Identities=12% Similarity=0.028 Sum_probs=69.0
Q ss_pred CccccEEEEeCCC--CCceeEeeCCceEEec----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCC
Q 019461 13 SREIWAKLEPSDS--RFADVDISSNEVVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQN 84 (340)
Q Consensus 13 ~~~~~~~L~~~~~--~~~~~~l~~~~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~ 84 (340)
.+..++.|+-..+ ....+.|.++.++||| ++.+++ .||+.||+|.++++ .|+|+|+ |+|||||||+++.
T Consensus 7 ~p~~~~~L~v~~g~~~g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~~~--~~~l~Dl~S~nGt~vng~~i~- 83 (115)
T 2xt9_B 7 LPSGSALLVVKRGPNAGSRFLLDQPTTSAGRHPDSDIFLDDVTVSRRHAEFRLEGG--EFQVVDVGSLNGTYVNREPVD- 83 (115)
T ss_dssp -CCSCEEEEEEESTTTTCEEEECSSEEEEESSTTSSEECCSTTSCSSCEEEEEETT--EEEEEECSCSSCEEETTEECS-
T ss_pred CCCCcEEEEEEeCCCCCeEEEECCCCEEECCCCCCCEEeCCcccChhheEEEEECC--EEEEEECCCCCCeEECCEEcc-
Confidence 3345566655433 3466789889999999 688888 99999999999855 5999999 9999999999998
Q ss_pred CceeeccCCCeeccCC
Q 019461 85 EEVVDIKCGTEIIPGP 100 (340)
Q Consensus 85 ~~~~~l~~gd~I~lg~ 100 (340)
.+.|.+||+|.+|.
T Consensus 84 --~~~L~~gd~i~iG~ 97 (115)
T 2xt9_B 84 --SAVLANGDEVQIGK 97 (115)
T ss_dssp --EEEECTTCEEEETT
T ss_pred --eEECCCCCEEEECC
Confidence 57999999999997
No 20
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=99.49 E-value=7.3e-14 Score=118.29 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=68.9
Q ss_pred cEEEEeCCCCCceeEeeCCceEEec----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCCCceeec
Q 019461 17 WAKLEPSDSRFADVDISSNEVVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQNEEVVDI 90 (340)
Q Consensus 17 ~~~L~~~~~~~~~~~l~~~~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~~~~~~l 90 (340)
-..|...++....+.|.++.++||| +|.+++ .||+.||+|.++.+. |+|+|+ |+|||||||++|. .+.|
T Consensus 67 ~l~L~v~~g~g~~~~L~~~~~~IGR~~~~dI~L~d~~VSr~HA~I~~~~~~--~~l~DlgStNGT~VNG~~i~---~~~L 141 (157)
T 3oun_A 67 SVTLQLDDGSGRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWDGQV--ALLADLNSTNGTTVNNAPVQ---EWQL 141 (157)
T ss_dssp CCEEEETTTTCCEEECCSEEEEEESSTTCSEECCCTTSCTTCEEEEECSSC--EEEEECSCSSCCEETTEECS---EEEC
T ss_pred EEEEEEcCCCCeEEEECCCcEEEEeCCCCCEEeCCCCcChhHEEEEEECCE--EEEEECCCCCCeEECCEECc---eEEC
Confidence 4456666666677899999999999 688888 999999999998665 999999 9999999999997 5799
Q ss_pred cCCCeeccCC
Q 019461 91 KCGTEIIPGP 100 (340)
Q Consensus 91 ~~gd~I~lg~ 100 (340)
.+||+|.+|.
T Consensus 142 ~~GD~I~lG~ 151 (157)
T 3oun_A 142 ADGDVIRLGH 151 (157)
T ss_dssp CTTCEEEETT
T ss_pred CCCCEEEECC
Confidence 9999999987
No 21
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=99.48 E-value=1.6e-13 Score=114.82 Aligned_cols=80 Identities=15% Similarity=0.049 Sum_probs=68.2
Q ss_pred ccEEEEeCCC--CCceeEeeCCceEEec----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCCCce
Q 019461 16 IWAKLEPSDS--RFADVDISSNEVVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQNEEV 87 (340)
Q Consensus 16 ~~~~L~~~~~--~~~~~~l~~~~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~~~~ 87 (340)
..+.|+-..+ ....+.|.++.++||| +|.+++ .||+.||+|.++++ .|+|+|+ |+|||||||+++. .
T Consensus 45 ~~~~L~v~~G~~~g~~~~L~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~--~~~l~DlgS~NGT~VNg~~i~---~ 119 (143)
T 2kb3_A 45 GSALLVVKRGPNAGARFLLDQPTTTAGRHPESDIFLDDVTVSRRHAEFRINEG--EFEVVDVGSLNGTYVNREPRN---A 119 (143)
T ss_dssp SCEEEEEEESTTTTCEEEECSSEEEESSCTTCSBCCCCSSCCSSSEEEEEETT--EEEEEESCCSSCCEETTEECS---E
T ss_pred ccEEEEEEeCCCCCeEEEeCCCCeeccCCCCCCEEeCCCCcChhhEEEEEECC--EEEEEECCCcCCeEECCEEcc---e
Confidence 4566665543 3466789889999999 688888 99999999999755 5999999 9999999999998 5
Q ss_pred eeccCCCeeccCC
Q 019461 88 VDIKCGTEIIPGP 100 (340)
Q Consensus 88 ~~l~~gd~I~lg~ 100 (340)
+.|.+||+|.+|.
T Consensus 120 ~~L~~GD~I~iG~ 132 (143)
T 2kb3_A 120 QVMQTGDEIQIGK 132 (143)
T ss_dssp EECCTTEEEEETT
T ss_pred EECCCCCEEEECC
Confidence 7999999999997
No 22
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.48 E-value=1e-13 Score=112.72 Aligned_cols=84 Identities=12% Similarity=0.123 Sum_probs=70.5
Q ss_pred CccccEEEEeCCCC-------CceeEeeCCceEEec------ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEe
Q 019461 13 SREIWAKLEPSDSR-------FADVDISSNEVVICS------EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILV 77 (340)
Q Consensus 13 ~~~~~~~L~~~~~~-------~~~~~l~~~~~~iGr------~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~v 77 (340)
.+...+.|+.+++. ...+.|.++.++||| +|.+++ .||+.||+|.+.++. |+|+|+ |+|||||
T Consensus 7 ~~~~~p~Lv~l~~d~~~s~~~~~~~~L~~~~~~IGr~r~~~~di~l~~~~vSr~Ha~i~~~~~~--~~l~dl~S~ngt~v 84 (120)
T 1wln_A 7 GPEKLPYLVELSPDGSDSRDKPKLYRLQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMDGV--VTVTPRSMDAETYV 84 (120)
T ss_dssp CGGGCCEEEEECSSSCCCSSCCCEEECCSEEEECSSSCCSTTCCCCCCTTCCSSCEEEEESSSC--EEEEESCSSSCEEE
T ss_pred CCCCcCEEEEeCCChhhccCccEEEEECCCCEEECCCCCCCCcEEECCCCCchhheEEEEcCCE--EEEEECCCCCCEEE
Confidence 34567788876642 345688888999995 588888 999999999998655 999999 8999999
Q ss_pred ccEecCCCceeeccCCCeeccCC
Q 019461 78 DDTMVQNEEVVDIKCGTEIIPGP 100 (340)
Q Consensus 78 ng~~i~~~~~~~l~~gd~I~lg~ 100 (340)
||++|. +.+.|.+||+|.+|.
T Consensus 85 Ng~~i~--~~~~L~~GD~I~iG~ 105 (120)
T 1wln_A 85 DGQRIS--ETTMLQSGMRLQFGT 105 (120)
T ss_dssp TSCBCS--SCEEECTTCEEEETT
T ss_pred CCEEcC--CCEECCCCCEEEECC
Confidence 999997 467999999999998
No 23
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.48 E-value=3.2e-14 Score=108.67 Aligned_cols=68 Identities=13% Similarity=0.049 Sum_probs=61.3
Q ss_pred cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhcc
Q 019461 129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAHS 203 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~~ 203 (340)
.+++.||||+++|.+||++ +|||+||+.||.+|+... .+||.|+..+.. +.+|..|.++++.+...+.
T Consensus 12 p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~~------~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRL-PSGTVMDRSIILRHLLNS------PTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp CTTTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHC------SBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred chheECcccCchhcCCeEC-CCCCEECHHHHHHHHhcC------CCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 4789999999999999999 999999999999999853 489999998876 8899999999999987654
No 24
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=99.47 E-value=4.9e-14 Score=115.85 Aligned_cols=82 Identities=18% Similarity=0.156 Sum_probs=70.3
Q ss_pred cccEEEEeCCC---CCceeEeeCCceEEec----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCCC
Q 019461 15 EIWAKLEPSDS---RFADVDISSNEVVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQNE 85 (340)
Q Consensus 15 ~~~~~L~~~~~---~~~~~~l~~~~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~~ 85 (340)
..+++|+.+.+ ....+.|.+..++||| +|.+++ .||+.||+|.++++. |+|+|+ |+|||||||+++..
T Consensus 10 ~~~~~L~v~~~~~~~g~~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~i~~~~~~--~~l~Dl~S~nGt~vNg~~i~~- 86 (128)
T 1r21_A 10 WPTRRLVTIKRSGVDGPHFPLSLSTCLFGRGIECDIRIQLPVVSKQHCKIEIHEQE--AILHNFSSTNPTQVNGSVIDE- 86 (128)
T ss_dssp CCCEEEEEEEETTEEEEEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEECSSC--EEECCCCSSSCCEETTEECSS-
T ss_pred CCceEEEEEeCCCCCceEEEECCCCEEECCCCCCCEEECCCCCChhHEEEEEECCE--EEEEECCCCCCEEECCEECCC-
Confidence 36888887653 2345688889999999 688888 999999999998655 999999 99999999999983
Q ss_pred ceeeccCCCeeccCC
Q 019461 86 EVVDIKCGTEIIPGP 100 (340)
Q Consensus 86 ~~~~l~~gd~I~lg~ 100 (340)
.+.|.+||+|.+|.
T Consensus 87 -~~~L~~Gd~i~iG~ 100 (128)
T 1r21_A 87 -PVRLKHGDVITIID 100 (128)
T ss_dssp -CEECCTTEEEECSS
T ss_pred -cEEcCCCCEEEECC
Confidence 68999999999996
No 25
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.46 E-value=3.4e-14 Score=111.36 Aligned_cols=71 Identities=24% Similarity=0.565 Sum_probs=62.7
Q ss_pred ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhccc
Q 019461 128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAHSS 204 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~~~ 204 (340)
..+.+.|+||++.|.+|+++.+|||+||..|+.+|+... ..||.||..+.. +..|..+.++++.+.+..++
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~------~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~~ 91 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK------TQCPTCCVTVTEPDLKNNRILDELVKSLNFARNH 91 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC------CBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC------CCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHHH
Confidence 346799999999999998887899999999999999754 489999999876 88899999999999877654
No 26
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.45 E-value=1.4e-13 Score=134.34 Aligned_cols=93 Identities=18% Similarity=0.267 Sum_probs=79.4
Q ss_pred CCCccccEEEEeCCCCCceeEeeCCceEEec----ccccCC-c---------cccceEEEEEeCCCC---eEEEEeccCC
Q 019461 11 KPSREIWAKLEPSDSRFADVDISSNEVVICS----EITSSS-S---------DKHEWCKITRNSDLH---SAKMQNKSSN 73 (340)
Q Consensus 11 ~~~~~~~~~L~~~~~~~~~~~l~~~~~~iGr----~~~~~~-~---------vS~~H~~i~~~~~~~---~~~i~D~StN 73 (340)
+|.+++||+|+++..++..+.|.++.++||| ++.+++ . ||++||+|+++.+.. .++|+|.|+|
T Consensus 4 ~~~~~~~g~l~~~~~~~~~~~l~~~~~~iGR~~~~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~~~~~i~D~S~n 83 (419)
T 3i6u_A 4 EPTPAPWARLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGN 83 (419)
T ss_dssp --CCCCSEEEEECSSSSCCEEECSSEEEEESSTTSSEETTCTTGGGCSGGGGSCTTCEEEECCEETTTEECCEEEECCSS
T ss_pred cccCCCceEeeecCCCCCceEecCCCEEecCCCccCEEECCcccccccccccccccceEEEEEcCCCCceEEEEEECCcC
Confidence 4566799999999999999999999999999 566666 4 499999998763221 3999999999
Q ss_pred ceEeccEecCCCceeeccCCCeeccCCCCc
Q 019461 74 AILVDDTMVQNEEVVDIKCGTEIIPGPDRE 103 (340)
Q Consensus 74 gt~vng~~i~~~~~~~l~~gd~I~lg~~~~ 103 (340)
||||||.+++++.+..+.+||.|.+|....
T Consensus 84 Gt~vn~~~~~~~~~~~l~~~d~i~~~~~~~ 113 (419)
T 3i6u_A 84 GTFVNTELVGKGKRRPLNNNSEIALSLSRN 113 (419)
T ss_dssp CEEETTEECCTTCEEECCTTEEEEESSTTC
T ss_pred CceECcccccCCCcccCCCCCEeeeecccc
Confidence 999999999999999999999999997654
No 27
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=99.45 E-value=2.7e-13 Score=115.67 Aligned_cols=80 Identities=13% Similarity=0.040 Sum_probs=67.9
Q ss_pred ccEEEEeCCC--CCceeEeeCCceEEec----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCCCce
Q 019461 16 IWAKLEPSDS--RFADVDISSNEVVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQNEEV 87 (340)
Q Consensus 16 ~~~~L~~~~~--~~~~~~l~~~~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~~~~ 87 (340)
..+.|+-..+ ....+.|.++.++||| +|.+++ .||++||+|.++++ .|+|+|+ |+|||||||+++. .
T Consensus 54 ~~~~L~v~~G~~~g~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~~~--~~~l~DlgS~NGT~VNg~~i~---~ 128 (162)
T 2kfu_A 54 GSALLVVKRGPNAGSRFLLDQAITSAGRHPDSDIFLDDVTVSRRHAEFRLENN--EFNVVDVGSLNGTYVNREPVD---S 128 (162)
T ss_dssp SCCEEEEEESTTCSCEEETTSSEEEEESCSSSSEESTTTSSSSCSEEEEEETT--EEEEECCCCSSCEEETTBCCS---E
T ss_pred ccEEEEEEeCCCCCeEEEECCCCEEECCCCCCCEEECCCCcChhhEEEEEECC--EEEEEECCCCCCeEECCEEcc---e
Confidence 4556655443 3456788889999999 688888 99999999999865 5999999 9999999999997 5
Q ss_pred eeccCCCeeccCC
Q 019461 88 VDIKCGTEIIPGP 100 (340)
Q Consensus 88 ~~l~~gd~I~lg~ 100 (340)
+.|.+||+|.+|.
T Consensus 129 ~~L~~GD~I~iG~ 141 (162)
T 2kfu_A 129 AVLANGDEVQIGK 141 (162)
T ss_dssp EECCSSCEEEETT
T ss_pred EECCCCCEEEECC
Confidence 7999999999997
No 28
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.45 E-value=8.4e-14 Score=109.16 Aligned_cols=69 Identities=16% Similarity=0.106 Sum_probs=61.9
Q ss_pred cCCceeccccccccCccEeCCCC-CcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhccc
Q 019461 129 IEHAKCCICLNIWHDVVTVAPCL-HNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAHSS 204 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~Pv~l~pCg-H~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~~~ 204 (340)
.+++.||||+++|.+||++ +|| |+||+.||.+|+... .+||.||..+.. +.+|..|.++++.++..+..
T Consensus 20 p~~~~CpI~~~~m~dPV~~-~cG~htf~r~cI~~~l~~~------~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~ 91 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVL-PSSRVTVDRSTIARHLLSD------QTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQ 91 (98)
T ss_dssp CTTTBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHTTTS------CBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTT
T ss_pred cHhcCCcCccccccCCeEC-CCCCeEECHHHHHHHHHhC------CCCCCCCCCCChhhceEcHHHHHHHHHHHHHcch
Confidence 4789999999999999999 999 999999999999753 489999999876 88999999999999877643
No 29
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.44 E-value=7.1e-14 Score=109.98 Aligned_cols=69 Identities=13% Similarity=0.042 Sum_probs=62.0
Q ss_pred cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhccc
Q 019461 129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAHSS 204 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~~~ 204 (340)
.+++.||||+++|.+||++ +|||+||+.||.+|+... .+||.|+..+.. +.+|..|.++++.+...+.+
T Consensus 27 p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~~------~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~ 97 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRL-PSGTIMDRSIILRHLLNS------PTDPFNRQTLTESMLEPVPELKEQIQAWMREKQN 97 (100)
T ss_dssp STTTBCTTTCSBCSSEEEE-TTTEEEEHHHHHHHTTSC------SBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTTC
T ss_pred cHhhCCcCccCcccCCeEC-CCCCEEchHHHHHHHHcC------CCCCCCCCCCChhhceECHHHHHHHHHHHHHhhh
Confidence 4789999999999999999 999999999999999743 589999999876 88999999999999877653
No 30
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.44 E-value=4e-14 Score=115.59 Aligned_cols=70 Identities=23% Similarity=0.485 Sum_probs=61.1
Q ss_pred cccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc---cCcchHHHHHHHHHHHhc
Q 019461 127 IDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF---VGRNHYLHNIEQSILQAH 202 (340)
Q Consensus 127 ~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~---~~~n~~l~~lve~~~~~~ 202 (340)
...+++.|+||+++|.+|+++ +|||+||..||..|+... ...||.||..+.. +..|..+.++++.++...
T Consensus 48 ~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~~ 120 (124)
T 3fl2_A 48 KVEETFQCICCQELVFRPITT-VCQHNVCKDCLDRSFRAQ-----VFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPGY 120 (124)
T ss_dssp HHHHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHHTT-----CCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTTT
T ss_pred hCccCCCCCcCChHHcCcEEe-eCCCcccHHHHHHHHhHC-----cCCCCCCCccCCCCCCCCCCHHHHHHHHHHcccc
Confidence 345779999999999999999 999999999999999843 2689999999976 889999999999887543
No 31
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=99.44 E-value=4.7e-13 Score=106.37 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=63.5
Q ss_pred EEEeCCC--CCceeEeeCC-ceEEec-----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCCCcee
Q 019461 19 KLEPSDS--RFADVDISSN-EVVICS-----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQNEEVV 88 (340)
Q Consensus 19 ~L~~~~~--~~~~~~l~~~-~~~iGr-----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~~~~~ 88 (340)
+|..+.+ ....+.|..+ .++||| ++.+++ .||+.||+|.++.++ .|+|+|+ |+|||||||+++.. .+
T Consensus 6 ~L~v~~G~~~g~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~~~-~~~l~Dl~S~nGt~vng~~i~~--~~ 82 (106)
T 3gqs_A 6 LLKVLAGANIGAEFHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIIIGNDN-SVLIEDLGSKNGVIVEGRKIEH--QS 82 (106)
T ss_dssp EEEECC-CCTTCEEEECTTCEEEEESCTTTCSEECCCTTSCSSCEEEEECTTS-CEEEEECSCSSCCEETTEECSS--EE
T ss_pred EEEEEeCCCCcEEEEECCCCEEEEeECCCcCCEEeCCCCcchhhcEEEECCCC-cEEEEECcCCCCeEECCEECCC--Ce
Confidence 3544444 2355688876 489999 467777 999999999998332 4999999 99999999999986 57
Q ss_pred eccCCCeeccCC
Q 019461 89 DIKCGTEIIPGP 100 (340)
Q Consensus 89 ~l~~gd~I~lg~ 100 (340)
.|.+||+|.+|.
T Consensus 83 ~L~~Gd~i~~G~ 94 (106)
T 3gqs_A 83 TLSANQVVALGT 94 (106)
T ss_dssp ECCTTCCEEETT
T ss_pred ECCCCCEEEECC
Confidence 999999999997
No 32
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.5e-13 Score=106.91 Aligned_cols=74 Identities=14% Similarity=0.277 Sum_probs=61.2
Q ss_pred cCCceeccccccccCccEeCC-CCCcccHhhHHHHHHhccCCCCCcCCCC--CCcc-cc--ccCcchHHHHHHHHHHHhc
Q 019461 129 IEHAKCCICLNIWHDVVTVAP-CLHNFCNGCFSEWLRRSQEKRSTVLCPH--CRAV-VQ--FVGRNHYLHNIEQSILQAH 202 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~Pv~l~p-CgH~FC~~Cl~~~~~~~~~~~~~~~CP~--Cr~~-~~--~~~~n~~l~~lve~~~~~~ 202 (340)
.+++.||||+++|.+||++ + |||+||+.||.+|+.......+...||. |+.. +. .+.+|..|.++++.++...
T Consensus 5 ~~~~~CPI~~~~~~dPV~~-~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKN-KVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR 83 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEE-SSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred CcEeECcCcCchhcCCEEc-CCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence 4789999999999999999 7 9999999999999986421223578999 9865 44 3899999999999987654
Q ss_pred c
Q 019461 203 S 203 (340)
Q Consensus 203 ~ 203 (340)
.
T Consensus 84 ~ 84 (94)
T 2yu4_A 84 H 84 (94)
T ss_dssp C
T ss_pred c
Confidence 3
No 33
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=99.43 E-value=4.5e-13 Score=106.23 Aligned_cols=87 Identities=6% Similarity=0.014 Sum_probs=77.4
Q ss_pred cccEEEEeCCCCCceeEee--CCceEEec--ccccCC-ccccceEEEEEeCCCCeEEEEeccCCceEeccEecCCCceee
Q 019461 15 EIWAKLEPSDSRFADVDIS--SNEVVICS--EITSSS-SDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNEEVVD 89 (340)
Q Consensus 15 ~~~~~L~~~~~~~~~~~l~--~~~~~iGr--~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~StNgt~vng~~i~~~~~~~ 89 (340)
.....|+|.++..+.|.|. .+.++||| +..+++ ++||+|++|..+.+...+++.++++|++++||+++.+++.+.
T Consensus 7 ~~~c~L~~~~~~~~~I~Lp~~~g~~viGR~p~t~I~DkrcSR~hv~L~ad~~~~~v~vk~lG~Np~~vng~~l~k~~~~~ 86 (110)
T 2brf_A 7 PGRLWLESPPGEAPPIFLPSDGQALVLGRGPLTQVTDRKCSRTQVELVADPETRTVAVKQLGVNPSTTGTQELKPGLEGS 86 (110)
T ss_dssp -CEEEEECSTTSSCCEECCSTTCCEEECSBTTTTBCCTTSCSSCEEEEEETTTTEEEEEECSSSCCEEC-CBCCTTCEEE
T ss_pred CcEEEEEeCCCCCCcEEeccCCCCEEEcCCCCcccccccceeeeEEEEEecCCCEEEEEEcccCCcEECCEEcCCCCEEE
Confidence 4578899999998999995 68999999 455777 999999999999887889999999999999999999999999
Q ss_pred ccCCCeeccCCC
Q 019461 90 IKCGTEIIPGPD 101 (340)
Q Consensus 90 l~~gd~I~lg~~ 101 (340)
|++||.|.+.++
T Consensus 87 L~~GD~leLl~g 98 (110)
T 2brf_A 87 LGVGDTLYLVNG 98 (110)
T ss_dssp EETTCEEEEETT
T ss_pred ecCCCEEEEccC
Confidence 999999998764
No 34
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.43 E-value=5.6e-14 Score=110.55 Aligned_cols=73 Identities=25% Similarity=0.564 Sum_probs=61.5
Q ss_pred ccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhcc
Q 019461 126 SIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAHS 203 (340)
Q Consensus 126 ~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~~ 203 (340)
....+++.|+||+++|.+|+++++|||+||..||.+|+.... ..||.||..+.. +..|..+.++++.+.....
T Consensus 17 ~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~-----~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~~ 91 (100)
T 3lrq_A 17 ESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR-----AQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQL 91 (100)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC-----SBCTTTCCBCCGGGCEECTTHHHHHHHHHHHCC
T ss_pred ccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCc-----CCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHHH
Confidence 344578999999999999999339999999999999998763 589999999876 7888999999887765543
No 35
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=99.43 E-value=9.6e-13 Score=108.01 Aligned_cols=88 Identities=6% Similarity=-0.012 Sum_probs=80.2
Q ss_pred cccEEEEeCCCCCceeEee--CCceEEec--ccccCC-ccccceEEEEEeCCCCeEEEEeccCCceEeccEecCCCceee
Q 019461 15 EIWAKLEPSDSRFADVDIS--SNEVVICS--EITSSS-SDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNEEVVD 89 (340)
Q Consensus 15 ~~~~~L~~~~~~~~~~~l~--~~~~~iGr--~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~StNgt~vng~~i~~~~~~~ 89 (340)
.....|+|+++..+.|.|. .+.++||| +..+++ ++||+|++|..+.+.+.++|.++++|+++|||+.++++..+.
T Consensus 7 ~~~c~L~p~d~~~~~I~Lp~~~g~vvIGRgPet~ItDkRcSR~qv~L~ad~~~g~V~Vk~lG~NP~~vng~~L~k~~~~~ 86 (143)
T 1yj5_C 7 RGRLWLQSPTGGPPPIFLPSDGQALVLGRGPLTQVTDRKCSRNQVELIADPESRTVAVKQLGVNPSTVGVHELKPGLSGS 86 (143)
T ss_dssp CEEEEEECCTTSCCCEECCTTTCEEEECSBTTTTBCCSSSCSSCEEEEEETTTTEEEEEECSSSCCEETTEECCTTCEEE
T ss_pred CCeEEEEecCCCCCcEEeccCCCCEEEcCCCccccccccccceeEEEEEecCCCeEEEEEcccCCcEECCEEecCCCEEE
Confidence 6778999999988999995 78999999 556777 999999999999887789999999999999999999999999
Q ss_pred ccCCCeeccCCCC
Q 019461 90 IKCGTEIIPGPDR 102 (340)
Q Consensus 90 l~~gd~I~lg~~~ 102 (340)
|++||.|.+.++.
T Consensus 87 L~~GD~LeLl~g~ 99 (143)
T 1yj5_C 87 LSLGDVLYLVNGL 99 (143)
T ss_dssp ECTTCEEESSSSC
T ss_pred ecCCCEEEEecCC
Confidence 9999999988743
No 36
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=99.40 E-value=7.6e-13 Score=112.53 Aligned_cols=75 Identities=12% Similarity=0.218 Sum_probs=62.2
Q ss_pred ceeEeeC-CceEEecc-------------------cccCC-ccccceEEEEEeCCCC--eEEEEec-cCCceEeccEecC
Q 019461 28 ADVDISS-NEVVICSE-------------------ITSSS-SDKHEWCKITRNSDLH--SAKMQNK-SSNAILVDDTMVQ 83 (340)
Q Consensus 28 ~~~~l~~-~~~~iGr~-------------------~~~~~-~vS~~H~~i~~~~~~~--~~~i~D~-StNgt~vng~~i~ 83 (340)
..+.|.. ..++|||+ |.+++ .||+.||.|.+..+.. .|+|+|+ |+|||||||++|.
T Consensus 48 ~~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l~~~~VSr~HA~I~~~~~~~~~~~~l~Dl~StNGT~VNg~ri~ 127 (158)
T 3els_A 48 KRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVVIP 127 (158)
T ss_dssp EEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCSSCEEEEEEEETTEEEEEEEECSCSSCCEETTEECC
T ss_pred eEEEecCCCceEeccccccccccccccccccccCCEEcCCCCCCcccEEEEEEccCCeeEEEEEeCCCCCccEECCEEcC
Confidence 4567765 46899995 23445 8999999999886543 3999999 9999999999999
Q ss_pred CCceeeccCCCeeccCCCC
Q 019461 84 NEEVVDIKCGTEIIPGPDR 102 (340)
Q Consensus 84 ~~~~~~l~~gd~I~lg~~~ 102 (340)
.+..+.|.+||+|.+|...
T Consensus 128 ~~~~~~L~~GD~I~~G~s~ 146 (158)
T 3els_A 128 GARYIELRSGDVLTLSEFE 146 (158)
T ss_dssp TTCCEECCTTEEEESSSCG
T ss_pred CCceEEcCCCCEEEECCCC
Confidence 9988999999999999753
No 37
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=99.39 E-value=1.4e-12 Score=102.35 Aligned_cols=84 Identities=15% Similarity=0.192 Sum_probs=74.7
Q ss_pred EEEeCCCCCceeEeeCCce-EEec--ccccCC-ccccceEEEEEeCCCCeEEEEeccCCceEeccEecCCCceeeccCCC
Q 019461 19 KLEPSDSRFADVDISSNEV-VICS--EITSSS-SDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNEEVVDIKCGT 94 (340)
Q Consensus 19 ~L~~~~~~~~~~~l~~~~~-~iGr--~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~StNgt~vng~~i~~~~~~~l~~gd 94 (340)
.|+|.+++.+.|.|..++. +||| +..++| ++||+|++|..+.+.+.++|.++++|+++|||+.+++++.+.|++||
T Consensus 6 ~L~~~~~~~~~I~L~~g~~v~iGR~p~t~I~DkrcSR~h~~L~~~~~~g~v~vk~lg~Np~~vng~~l~k~~~~~L~~GD 85 (102)
T 3kt9_A 6 WLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQ 85 (102)
T ss_dssp EEEETTSTTCEEECCBTCEEEECSSTTTCCCCTTSCSSCEEEEEETTTTEEEEEECSSSCCEETTEECCBTCEEEECTTC
T ss_pred EEEecCCCCCcEEcCCCCcEEeccCCccccccCcccCcceEEEEecCCCEEEEEECcCCCCeECCEEcCCCCeEEeCCCC
Confidence 5899999899999988775 5799 455677 99999999999977667899999999999999999999999999999
Q ss_pred eeccCCCC
Q 019461 95 EIIPGPDR 102 (340)
Q Consensus 95 ~I~lg~~~ 102 (340)
.|.+.++.
T Consensus 86 ~l~Ll~~~ 93 (102)
T 3kt9_A 86 VLHMVNEL 93 (102)
T ss_dssp CEEEETTE
T ss_pred EEEEccCC
Confidence 99988743
No 38
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.39 E-value=1.1e-13 Score=115.15 Aligned_cols=67 Identities=28% Similarity=0.692 Sum_probs=57.6
Q ss_pred ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccccCcchHHHHHHHHHHHh
Q 019461 128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQFVGRNHYLHNIEQSILQA 201 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~~~~n~~l~~lve~~~~~ 201 (340)
.+++++|+||++.|.+|+++ ||||+||..||..|+... ..||.||+.+.....|..++++++.++..
T Consensus 50 ~~~~~~C~iC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~------~~CP~Cr~~~~~~~~~~~~~~~i~~~~~~ 116 (138)
T 4ayc_A 50 LENELQCIICSEYFIEAVTL-NCAHSFCSYCINEWMKRK------IECPICRKDIKSKTYSLVLDNCINKMVNN 116 (138)
T ss_dssp HHHHSBCTTTCSBCSSEEEE-TTSCEEEHHHHHHHTTTC------SBCTTTCCBCCCEEECHHHHHHHHHHHTT
T ss_pred ccccCCCcccCcccCCceEC-CCCCCccHHHHHHHHHcC------CcCCCCCCcCCCCCCccchhHHHHHHHHH
Confidence 45678999999999999999 999999999999999765 48999999998766778888888776643
No 39
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.39 E-value=2.1e-12 Score=103.57 Aligned_cols=89 Identities=6% Similarity=-0.001 Sum_probs=80.3
Q ss_pred CccccEEEEeCCCCCceeEee--CCceEEec--ccccCC-ccccceEEEEEeCCCCeEEEEeccCCceEeccEecCCCce
Q 019461 13 SREIWAKLEPSDSRFADVDIS--SNEVVICS--EITSSS-SDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNEEV 87 (340)
Q Consensus 13 ~~~~~~~L~~~~~~~~~~~l~--~~~~~iGr--~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~StNgt~vng~~i~~~~~ 87 (340)
......+|+|.++..+.|.|. ...++||| +..++| ++||+|++|..+.+...++|.++++|+++|||+++.++..
T Consensus 12 ~~~~~c~L~~~~~~~~~I~Lp~~~g~~viGRgp~t~I~DkrcSR~qv~L~ad~~~~~v~vk~lG~NP~~vng~~l~k~~~ 91 (119)
T 1ujx_A 12 GSRGRLWLQSPTGGPPPIFLPSDGQALVLGRGPLTQVTDRKCSRNQVELIADPESRTVAVKQLGVNPSTVGVQELKPGLS 91 (119)
T ss_dssp SCCCCEEEECCSSSCCCCCCCTTSCCEEESBBTTTTBCCTTSCTTSEEEEEETTTTEEEEEECSSSCCBSSSSBCCTTCE
T ss_pred CccceEEEEeCCCCCCcEEeccCCCCEEEcCCCCcccccccccceeEEEEEecCCCEEEEEEcccCCcEECCEEecCCCE
Confidence 336788999999988999995 78999999 556777 9999999999998877899999999999999999999999
Q ss_pred eeccCCCeeccCCC
Q 019461 88 VDIKCGTEIIPGPD 101 (340)
Q Consensus 88 ~~l~~gd~I~lg~~ 101 (340)
+.|++||.|.+.++
T Consensus 92 ~~L~~GD~l~Ll~g 105 (119)
T 1ujx_A 92 GSLSLGDVLYLVNG 105 (119)
T ss_dssp EEEETTCCCBCBTT
T ss_pred EEecCCCEEEEecC
Confidence 99999999998774
No 40
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.38 E-value=1.6e-13 Score=109.23 Aligned_cols=70 Identities=29% Similarity=0.643 Sum_probs=60.5
Q ss_pred hccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc------cCcchHHHHHHHHH
Q 019461 125 ISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF------VGRNHYLHNIEQSI 198 (340)
Q Consensus 125 ~~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~------~~~n~~l~~lve~~ 198 (340)
.....+++.|+||+++|.+|+++.+|||+||..||..|+... ..||.||..+.. +..|..+.++++.+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~------~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~ 82 (108)
T 2ckl_A 9 ITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS------KYCPICDVQVHKTRPLLNIRSDKTLQDIVYKL 82 (108)
T ss_dssp HHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC------SBCTTTCCBSCSSCGGGGEEECHHHHHHHHHH
T ss_pred hhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC------CcCcCCCccccccCcccccCcCHHHHHHHHHH
Confidence 344567899999999999999977999999999999999764 489999999874 57899999999987
Q ss_pred HH
Q 019461 199 LQ 200 (340)
Q Consensus 199 ~~ 200 (340)
+.
T Consensus 83 ~~ 84 (108)
T 2ckl_A 83 VP 84 (108)
T ss_dssp ST
T ss_pred hh
Confidence 65
No 41
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=99.37 E-value=1.1e-12 Score=115.26 Aligned_cols=76 Identities=12% Similarity=0.229 Sum_probs=62.9
Q ss_pred CceeEee-CCceEEecc-------------------cccCC-ccccceEEEEEeCCCC--eEEEEec-cCCceEeccEec
Q 019461 27 FADVDIS-SNEVVICSE-------------------ITSSS-SDKHEWCKITRNSDLH--SAKMQNK-SSNAILVDDTMV 82 (340)
Q Consensus 27 ~~~~~l~-~~~~~iGr~-------------------~~~~~-~vS~~H~~i~~~~~~~--~~~i~D~-StNgt~vng~~i 82 (340)
...+.|. +..++|||+ |.+++ .||+.||.|.+..+.. .|+|+|+ |+|||||||++|
T Consensus 94 i~~~~L~~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~~~~~~~~l~DLgStNGTfVNG~rI 173 (205)
T 3elv_A 94 WKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVVI 173 (205)
T ss_dssp SEEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEETTEEEEEEEECSCSSCCEETTEEC
T ss_pred ceEEEecCCCceeecccccccccccccccccCccceEEeCCCCCCcccEEEEEecCCCceeEEEEeCCCCCCCeECCEEC
Confidence 3456774 467999985 34556 8999999998775432 4999999 999999999999
Q ss_pred CCCceeeccCCCeeccCCCC
Q 019461 83 QNEEVVDIKCGTEIIPGPDR 102 (340)
Q Consensus 83 ~~~~~~~l~~gd~I~lg~~~ 102 (340)
.....+.|.+||+|.+|...
T Consensus 174 ~~~~~~~L~~GD~I~fG~s~ 193 (205)
T 3elv_A 174 PGARYIELRSGDVLTLSEFE 193 (205)
T ss_dssp CBTSCEECCTTCEEESSSSG
T ss_pred CCCceeECCCCCEEEECCCC
Confidence 99988999999999999753
No 42
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=99.37 E-value=1.8e-12 Score=105.68 Aligned_cols=81 Identities=16% Similarity=0.193 Sum_probs=64.1
Q ss_pred ccEEEEeCCCC--Cc---eeEeeCCceEEec----ccccCC-ccccceEEEEEeCCCCeEEEEeccCCceEeccEecCCC
Q 019461 16 IWAKLEPSDSR--FA---DVDISSNEVVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNE 85 (340)
Q Consensus 16 ~~~~L~~~~~~--~~---~~~l~~~~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~StNgt~vng~~i~~~ 85 (340)
.-+.|+.+++. .. .+.|.+ .++||| ||.+++ .||+.||.|.++.+ +.++|+|+++|||||||++|..
T Consensus 25 ~~PhLvnLn~Dp~~s~~l~y~L~~-~t~IGR~~~~DI~L~~~~Vs~~Ha~I~~~~~-g~~~l~dl~~ngt~VNG~~V~~- 101 (124)
T 3fm8_A 25 DKCFLVNLNADPALNELLVYYLKE-HTLIGSANSQDIQLCGMGILPEHCIIDITSE-GQVMLTPQKNTRTFVNGSSVSS- 101 (124)
T ss_dssp --CEEEETTCCTTSSCCCEEECCS-EEEEESSTTCSEECCSTTCCSSCEEEEECTT-SCEEEEECTTCCEEETTEECCS-
T ss_pred CccEEEEeCCCCccCceEEEECCC-CeEECCCCCCCEEECCCCeecceEEEEECCC-CeEEEEECCCCCEEECCEEcCC-
Confidence 45578877762 12 235544 699999 799998 99999999998422 2499999999999999999973
Q ss_pred ceeeccCCCeeccCC
Q 019461 86 EVVDIKCGTEIIPGP 100 (340)
Q Consensus 86 ~~~~l~~gd~I~lg~ 100 (340)
.+.|.+||+|.+|.
T Consensus 102 -~~~L~~GD~I~lG~ 115 (124)
T 3fm8_A 102 -PIQLHHGDRILWGN 115 (124)
T ss_dssp -CEEECTTCEEEETT
T ss_pred -cEECCCCCEEEECC
Confidence 68999999999997
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.36 E-value=2.8e-13 Score=114.38 Aligned_cols=68 Identities=22% Similarity=0.485 Sum_probs=59.9
Q ss_pred ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc---cCcchHHHHHHHHHHHh
Q 019461 128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF---VGRNHYLHNIEQSILQA 201 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~---~~~n~~l~~lve~~~~~ 201 (340)
..+.+.|+||+++|.+|+++ +|||+||..||.+|+.... ..||.||..+.. +..|..+.++++.++..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~~-----~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~ 145 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTT-ECFHNVCKDCLQRSFKAQV-----FSCPACRHDLGQNYIMIPNEILQTLLDLFFPG 145 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHHTTC-----CBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTT
T ss_pred CccCCEeecCChhhcCCEEc-CCCCchhHHHHHHHHHhCC-----CcCCCCCccCCCCCCCCCCHHHHHHHHHHhhH
Confidence 34679999999999999998 9999999999999998643 689999999875 68999999999987643
No 44
>2xoc_A E3 ubiquitin-protein ligase CHFR; zinc-binding, poly(ADP-ribose) mitosis, antephase checkpoint, cell cycle; HET: PGE ADP ADE; 1.89A {Homo sapiens} PDB: 2xoy_A* 2xoz_A* 2xp0_A
Probab=99.36 E-value=1.7e-13 Score=123.15 Aligned_cols=63 Identities=27% Similarity=0.632 Sum_probs=54.0
Q ss_pred CCCCcccCCCCCcccCccccCCCCCCCC-------CCCccccccccccccccccCCccCC-CCCcccccCC
Q 019461 259 EINGFHCNQTTVHLQCQGCGGMMPSRND-------SVPQHCLGCDRAFCGAYWHAQMVAR-SDSQPMCSHE 321 (340)
Q Consensus 259 ~~~~~~C~~~~~hl~C~~C~~~~p~r~~-------~~~~~C~~C~~~~C~~y~~~~~~~~-~~~~~~~~~~ 321 (340)
.+++|+||..+.|+.|++|.++||+|+. .++++|.+|+++|||||||+.++++ +...++|+++
T Consensus 67 ~~~gf~Cp~~~~H~~C~~C~~~MP~R~~~~~~~~~~~pq~C~iC~r~FC~lYw~c~~~~c~g~L~~~~dl~ 137 (261)
T 2xoc_A 67 AVQDYVCPLQGSHALCTCCFQPMPDRRVEREQDPRVAPQQCAVCLQPFCHLYWGCTRTGCYGCLAPFCELN 137 (261)
T ss_dssp ---CCCCCTTCCEEECTTTCCEEECCHHHHHTCTTSCCCBCTTTCCBCCHHHHCCCCTTCSCSEEEGGGCC
T ss_pred CCCCCcCCCCCCCcCcCcccCcCCCCCccccccCCCCCCCCCCcCccccCcccccCCCCCcccccchhhcC
Confidence 4589999999999999999999999963 7899999999999999999998766 5556777776
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.35 E-value=4.7e-14 Score=113.63 Aligned_cols=71 Identities=30% Similarity=0.600 Sum_probs=58.8
Q ss_pred ccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc---------cCcchHHHHHHH
Q 019461 126 SIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF---------VGRNHYLHNIEQ 196 (340)
Q Consensus 126 ~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~---------~~~n~~l~~lve 196 (340)
....+++.|+||+++|.+|+++ +|||+||..||.+|+.... ..||.||..+.. +..|..+.++++
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~-----~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~ 83 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTL-PCNHTLCKPCFQSTVEKAS-----LCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQ 83 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEEC-TTSCEECHHHHCCCCCTTT-----SBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred cCCCCCCCCccCCcccCceeEc-CCCCHHhHHHHHHHHhHCc-----CCCCCCCcccCccccccccccchhhHHHHHHHH
Confidence 3445789999999999999999 9999999999999986533 689999998763 556888888888
Q ss_pred HHHHhc
Q 019461 197 SILQAH 202 (340)
Q Consensus 197 ~~~~~~ 202 (340)
.++...
T Consensus 84 ~~~p~~ 89 (115)
T 3l11_A 84 KHYPRE 89 (115)
T ss_dssp HHSHHH
T ss_pred HHCCHH
Confidence 776543
No 46
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.33 E-value=1.8e-13 Score=103.51 Aligned_cols=66 Identities=29% Similarity=0.609 Sum_probs=53.0
Q ss_pred ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHH
Q 019461 128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNI 194 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~l 194 (340)
..+.+.|+||++.|.+|+.+ +|+|+||..|+..|+...........||.||..+.. +..|..+.++
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEEC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred CccCCCCcCCChhhCcceeC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 34789999999999999988 999999999999999874322235799999999875 5666655544
No 47
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=99.33 E-value=3.9e-12 Score=107.80 Aligned_cols=84 Identities=17% Similarity=0.160 Sum_probs=67.3
Q ss_pred cccEEEEeCCCC--Cce---eEeeCCceEEec-------ccccCC-ccccceEEEEEeCCCC--eEEEEec-cCCceEec
Q 019461 15 EIWAKLEPSDSR--FAD---VDISSNEVVICS-------EITSSS-SDKHEWCKITRNSDLH--SAKMQNK-SSNAILVD 78 (340)
Q Consensus 15 ~~~~~L~~~~~~--~~~---~~l~~~~~~iGr-------~~~~~~-~vS~~H~~i~~~~~~~--~~~i~D~-StNgt~vn 78 (340)
..-+.|+.+++. +.. +.|.++.++||| ||.+++ .||+.||.|.+++++. .+++.|+ |+||||||
T Consensus 36 ~~~PhLvnLn~Dp~ls~~lvy~L~~g~t~IGR~~~~~~~DI~L~~~~Vs~~H~~i~~~~~~~~~~~~~~d~~S~ngt~VN 115 (154)
T 4ejq_A 36 KKTPHLVNLNEDPLMSECLLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVN 115 (154)
T ss_dssp SSSCEEEECCCCTTCSSEEEEECCSEEEEEECSSCSSCCSEECCCTTCCSEEEEEEEECTTSSSCEEEEEECTTCCEEET
T ss_pred CCCceEEEecCCcccCceEEEEeCCCCEEEcCCCCCCCCCEEECCCCcccccEEEEEecCCCceeEEEEecCCCCceEEC
Confidence 345678887762 222 478888999999 588988 9999999999986542 3666665 99999999
Q ss_pred cEecCCCceeeccCCCeeccCC
Q 019461 79 DTMVQNEEVVDIKCGTEIIPGP 100 (340)
Q Consensus 79 g~~i~~~~~~~l~~gd~I~lg~ 100 (340)
|++|.. .+.|++||+|.+|.
T Consensus 116 G~~i~~--~~~L~~GD~I~~G~ 135 (154)
T 4ejq_A 116 GKKVTE--PSILRSGNRIIMGK 135 (154)
T ss_dssp TEECCS--CEECCTTCEEEETT
T ss_pred CEEcCC--ceECCCCCEEEECC
Confidence 999953 67899999999997
No 48
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.32 E-value=4.8e-14 Score=105.58 Aligned_cols=67 Identities=25% Similarity=0.548 Sum_probs=52.7
Q ss_pred cccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccC-CCCCcCCCCCCccccc--cCcchHHHHH
Q 019461 127 IDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQE-KRSTVLCPHCRAVVQF--VGRNHYLHNI 194 (340)
Q Consensus 127 ~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~-~~~~~~CP~Cr~~~~~--~~~n~~l~~l 194 (340)
...+++.|+||++.|.+|+++ +|||+||..|+.+|+..... ......||.||..+.. +..|..|.++
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSL-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCC-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred hcccCCCCcCCCcccCCeeEC-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 345789999999999999998 99999999999999875311 1225789999999865 6666665544
No 49
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=99.31 E-value=4.7e-12 Score=122.73 Aligned_cols=82 Identities=17% Similarity=0.125 Sum_probs=71.4
Q ss_pred ccccEEEEeCCCCCceeEeeCCceEEec----ccccCC-ccccceEEEEEeCCCCeEEEEec-cCCceEeccEecCCCce
Q 019461 14 REIWAKLEPSDSRFADVDISSNEVVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNK-SSNAILVDDTMVQNEEV 87 (340)
Q Consensus 14 ~~~~~~L~~~~~~~~~~~l~~~~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~-StNgt~vng~~i~~~~~ 87 (340)
..+|+.|+.... ...+.|.++.++||| +|.+++ .||+.||+|.++++. |+|+|+ |+|||||||+++. +.
T Consensus 286 ~~~~~~l~~~~~-g~~~~l~~~~~~iGR~~~~di~l~~~~vSr~Ha~i~~~~~~--~~l~Dl~S~nGt~vng~~i~--~~ 360 (388)
T 2ff4_A 286 QQAVAYLHDIAS-GRGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTN--YVINDLRSSNGVHVQHERIR--SA 360 (388)
T ss_dssp SBCCCEEEETTT-CCEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEECSSC--EEEEECSCSSCCEETTEECS--SE
T ss_pred CCCeEEEEECCC-CcEEEECCCCEEEecCCCCeEEECCCccChhHeEEEEECCE--EEEEECCCCCCeEECCEECC--Cc
Confidence 357888877554 367899999999999 688888 999999999998665 999999 9999999999995 47
Q ss_pred eeccCCCeeccCC
Q 019461 88 VDIKCGTEIIPGP 100 (340)
Q Consensus 88 ~~l~~gd~I~lg~ 100 (340)
+.|++||+|.+|.
T Consensus 361 ~~L~~gd~i~~G~ 373 (388)
T 2ff4_A 361 VTLNDGDHIRICD 373 (388)
T ss_dssp EEECTTCEEEETT
T ss_pred eECCCCCEEEECC
Confidence 8999999999997
No 50
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.9e-13 Score=103.45 Aligned_cols=66 Identities=29% Similarity=0.618 Sum_probs=52.7
Q ss_pred ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHH
Q 019461 128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNI 194 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~l 194 (340)
..+.+.|+||++.+.+|+.+ +|||+||..|+..|+.......+...||.||..+.. +..|..+.++
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred ccCCCCCCCCCcccCCceeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 44789999999999999998 999999999999999873211234789999999875 6666665444
No 51
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.30 E-value=8.9e-13 Score=112.86 Aligned_cols=71 Identities=25% Similarity=0.555 Sum_probs=59.4
Q ss_pred cccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc---cCcchHHHHHHHHHHHhc
Q 019461 127 IDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF---VGRNHYLHNIEQSILQAH 202 (340)
Q Consensus 127 ~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~---~~~n~~l~~lve~~~~~~ 202 (340)
...+.+.|+||++.|.+|+++++|||+||..||..|+.... ..||.||..+.. +..|..+.++++.+....
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-----~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~~ 123 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGN-----KECPTCRKKLVSKRSLRPDPNFDALISKIYPSR 123 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTC-----CBCTTTCCBCCSGGGEEECHHHHHHHHHHC---
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCc-----CCCCCCCCcCCCcccCCcCHHHHHHHHHHHcch
Confidence 34567899999999999998879999999999999998633 589999998854 788999999999886543
No 52
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.29 E-value=6.1e-13 Score=107.51 Aligned_cols=70 Identities=24% Similarity=0.466 Sum_probs=60.5
Q ss_pred ccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhcc
Q 019461 126 SIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAHS 203 (340)
Q Consensus 126 ~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~~ 203 (340)
....+++.|+||+++|.+|+++.+|||+||..||..|+. ..||.||..+.. +..|..+.++++.+.+..+
T Consensus 17 ~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--------~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~~ 88 (117)
T 1jm7_B 17 DRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--------TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLRN 88 (117)
T ss_dssp HHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--------TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHHH
T ss_pred HhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--------CCCcCCCCcCccccccccHHHHHHHHHHHHHHH
Confidence 334578999999999999998768999999999999986 379999999865 7889999999998876543
No 53
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.4e-12 Score=96.95 Aligned_cols=55 Identities=24% Similarity=0.515 Sum_probs=47.3
Q ss_pred ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc-cCcch
Q 019461 128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF-VGRNH 189 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~-~~~n~ 189 (340)
..+.+.|+||++.|.+|+++ +|||+||..|+.+|+... ..||.||..+.. +..|.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~------~~CP~Cr~~~~~~~~~~~ 67 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVT-KCRHYFCESCALEHFRAT------PRCYICDQPTGGIFNPAK 67 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEEC-TTSCEEEHHHHHHHHHHC------SBCSSSCCBCCSCCEECH
T ss_pred CCCCCCCcCCCchhcCeeEc-cCCCHhHHHHHHHHHHCC------CcCCCcCccccccCCcHH
Confidence 44678999999999999988 999999999999999764 489999999875 45553
No 54
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.28 E-value=1.8e-12 Score=96.08 Aligned_cols=52 Identities=29% Similarity=0.640 Sum_probs=45.0
Q ss_pred cccCCceeccccccccCccEeCC-CCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461 127 IDIEHAKCCICLNIWHDVVTVAP-CLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183 (340)
Q Consensus 127 ~~~e~l~C~IC~~~~~~Pv~l~p-CgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 183 (340)
...+++.|+||++.|.+|+++ + |||+||..||.+|+.... ...||.||+.+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~-~~CgH~fC~~Ci~~~~~~~~----~~~CP~Cr~~~~ 63 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVI-PCCGNSYCDECIRTALLESD----EHTCPTCHQNDV 63 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEEC-SSSCCEECTTHHHHHHHHSS----SSCCSSSCCSSC
T ss_pred cCCCCCCCcCCChHHhCCeEc-CCCCCHHHHHHHHHHHHhcC----CCcCCCCCCcCC
Confidence 345789999999999999998 8 999999999999998642 358999999754
No 55
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.28 E-value=7.6e-13 Score=105.66 Aligned_cols=70 Identities=21% Similarity=0.534 Sum_probs=58.6
Q ss_pred ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHh
Q 019461 128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQA 201 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~ 201 (340)
..+.+.|+||++.+.+|+++ +|||+||..|+.+|+.... +...||.||..+.. +..|..+.++++.+++.
T Consensus 18 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~---~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~ 89 (112)
T 1jm7_A 18 MQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKK---GPSQCPLCKNDITKRSLQESTRFSQLVEELLKI 89 (112)
T ss_dssp HHHHTSCSSSCCCCSSCCBC-TTSCCCCSHHHHHHHHSSS---SSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHH
T ss_pred ccCCCCCcccChhhcCeEEC-CCCCHHHHHHHHHHHHhCC---CCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHH
Confidence 34678999999999999998 9999999999999998542 34689999999876 67788888888877653
No 56
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.2e-12 Score=95.01 Aligned_cols=52 Identities=33% Similarity=0.670 Sum_probs=46.0
Q ss_pred cccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 127 IDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 127 ~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
...+.+.|+||++.|.+|+++.+|||+||..||.+|+... ..||.||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~------~~CP~Cr~~~~~ 62 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS------NRCPKCNIVVHQ 62 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC------SSCTTTCCCCCS
T ss_pred hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC------CcCCCcCcccCc
Confidence 3457899999999999999877999999999999999764 489999998865
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.26 E-value=3.7e-12 Score=117.27 Aligned_cols=70 Identities=11% Similarity=0.105 Sum_probs=61.9
Q ss_pred ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhcc
Q 019461 128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAHS 203 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~~ 203 (340)
..+.+.||||+++|.+||++ ||||+||+.||.+|+..+. ..||.||.++.. +.+|..|.++++.++..++
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~-~~gh~f~~~~i~~~~~~~~-----~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~ 276 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRVG-----HFNPVTRSPLTQEQLIPNLAMKEVIDAFISENG 276 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEEC-SSCCEEETTHHHHHHHHTC-----SSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCS
T ss_pred CCcccCCcCcCCHhcCCeEC-CCCCEECHHHHHHHHHHCC-----CCCcCCCCCCchhcCcccHHHHHHHHHHHHHCC
Confidence 34789999999999999999 9999999999999998653 359999999875 8899999999999987653
No 58
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.24 E-value=5.9e-12 Score=108.82 Aligned_cols=69 Identities=13% Similarity=0.130 Sum_probs=61.5
Q ss_pred cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhcc
Q 019461 129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAHS 203 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~~ 203 (340)
.+++.||||+++|.+||++ ||||+||+.||..|+.... .+||.|+.++.. +.+|..|.++++.+...+.
T Consensus 104 p~~f~CPI~~elm~DPV~~-~~Ghtfer~~I~~~l~~~~-----~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~ 174 (179)
T 2f42_A 104 PDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRVG-----HFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENG 174 (179)
T ss_dssp CGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHTC-----SBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCT
T ss_pred cHhhcccCccccCCCCeEC-CCCCEECHHHHHHHHHhCC-----CCCCCCcCCCChhhCcchHHHHHHHHHHHHHCC
Confidence 4789999999999999999 9999999999999998643 279999999876 8899999999999987653
No 59
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=4.8e-12 Score=91.48 Aligned_cols=51 Identities=24% Similarity=0.527 Sum_probs=44.3
Q ss_pred ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
..+.+.|+||++.+.+|+.+ +|||+||..|+.+|+... ...||.||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQT-ECGHRFCESCMAALLSSS-----SPKCTACQESIVK 62 (66)
T ss_dssp CCCCEECTTTCCEESSCCCC-SSSCCCCHHHHHHHHTTS-----SCCCTTTCCCCCT
T ss_pred CCcCCCCCCCChHhcCeeEC-CCCCHHHHHHHHHHHHhC-----cCCCCCCCcCCCh
Confidence 35789999999999999998 999999999999999633 2589999998753
No 60
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.22 E-value=4.9e-12 Score=102.31 Aligned_cols=64 Identities=23% Similarity=0.466 Sum_probs=54.0
Q ss_pred ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHH
Q 019461 128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQS 197 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~ 197 (340)
..+.+.|+||++++.+|+++ +|||+||..||.+|+.... ..||.||..+.. +..+..+.++++.
T Consensus 15 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~-----~~CP~Cr~~~~~~~~~~~~~l~~~i~~ 80 (118)
T 3hct_A 15 LESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDAG-----HKCPVDNEILLENQLFPDNFAKREILS 80 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHHC-----SBCTTTCCBCCGGGCEECHHHHHHHHT
T ss_pred CCCCCCCCcCChhhcCeEEC-CcCChhhHHHHHHHHhhCC-----CCCCCCCCCcCHHhcccCHHHHHHHcc
Confidence 34779999999999999998 9999999999999998764 489999999876 5567777666654
No 61
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=4.9e-12 Score=93.10 Aligned_cols=55 Identities=35% Similarity=0.644 Sum_probs=46.1
Q ss_pred ccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 126 SIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 126 ~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
....+.+.|+||++.+.+|+++ +|||+||..|+.+|+... .....||.||+.+..
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETS---CGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEEC-TTCCEEEHHHHHHHCSSS---CSCCCCSSSCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEc-CCCChhhHHHHHHHHHcC---CCCCCCCCCCCcCCc
Confidence 3445789999999999999999 999999999999998632 124689999998754
No 62
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=7.9e-12 Score=89.43 Aligned_cols=49 Identities=37% Similarity=0.695 Sum_probs=41.8
Q ss_pred ccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCC
Q 019461 126 SIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHC 178 (340)
Q Consensus 126 ~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~C 178 (340)
....+++.|+||++.|.+|+++ +|||+||..||.+|++... ....||.|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~---~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSC---GFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHHHCS---SCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHHcCC---CCCcCcCC
Confidence 4456789999999999999999 9999999999999998521 24689988
No 63
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=4.4e-12 Score=96.68 Aligned_cols=55 Identities=25% Similarity=0.620 Sum_probs=46.7
Q ss_pred ccccCCceeccccccccC----ccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 126 SIDIEHAKCCICLNIWHD----VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 126 ~~~~e~l~C~IC~~~~~~----Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
....+.+.|+||++.|.+ |+.+ +|||+||..|+.+|+.... ....||.||..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~---~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASSI---NGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHCS---SCBCCTTTCCCBCC
T ss_pred hhccCCCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcCC---CCcCCCCCCCcccc
Confidence 445578999999999998 9888 9999999999999998751 24689999998754
No 64
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=9.7e-12 Score=91.25 Aligned_cols=50 Identities=28% Similarity=0.607 Sum_probs=44.3
Q ss_pred ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
..+.+.|+||++.+.+|+.+ +|+|.||..||.+|+... ..||.||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~------~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSL-PCKHVFCYLCVKGASWLG------KRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEE-TTTEEEEHHHHHHCTTCS------SBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEc-cCCCHHHHHHHHHHHHCC------CcCcCcCchhCH
Confidence 35778999999999999999 999999999999998754 489999998764
No 65
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.15 E-value=1.2e-11 Score=90.47 Aligned_cols=50 Identities=28% Similarity=0.788 Sum_probs=43.9
Q ss_pred ccCCceeccccccccCc-------cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 128 DIEHAKCCICLNIWHDV-------VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~P-------v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
.++++.|+||++.+.+| +.+ +|||+||..|+.+|+... ..||.||+.+..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~------~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA------NTCPTCRKKINH 63 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHHC------SBCTTTCCBCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHcC------CCCCCCCCccCh
Confidence 35789999999999988 666 999999999999999875 389999998865
No 66
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.15 E-value=2e-11 Score=98.24 Aligned_cols=62 Identities=29% Similarity=0.527 Sum_probs=50.2
Q ss_pred cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc---cCcchHHHHHHH
Q 019461 129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF---VGRNHYLHNIEQ 196 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~---~~~n~~l~~lve 196 (340)
.+++.|+||++.+.+|+.+ +|||+||..||.+|+.... ..||.||..+.. ...+..+.+++.
T Consensus 21 ~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~-----~~CP~Cr~~~~~~~~~~~~~~l~~~i~ 85 (116)
T 1rmd_A 21 VKSISCQICEHILADPVET-SCKHLFCRICILRCLKVMG-----SYCPSCRYPCFPTDLESPVKSFLNILN 85 (116)
T ss_dssp HHHTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHTC-----SBCTTTCCBCCGGGCBCCCHHHHHHHH
T ss_pred cCCCCCCCCCcHhcCcEEc-CCCCcccHHHHHHHHhHCc-----CcCCCCCCCCCHhhccccHHHHHHHHH
Confidence 3578999999999999998 9999999999999998743 589999999875 234455544443
No 67
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=2.6e-11 Score=87.34 Aligned_cols=49 Identities=20% Similarity=0.546 Sum_probs=42.0
Q ss_pred CCceeccccc-cccCcc----EeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 130 EHAKCCICLN-IWHDVV----TVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 130 e~l~C~IC~~-~~~~Pv----~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
+++.|+||++ +|.+|+ .+ +|||+||..|+.+|+.... ..||.||..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~-----~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVRGA-----GNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEEC-TTCCCEEHHHHHHHHHTTS-----SSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecC-CCCCHhHHHHHHHHHHcCC-----CcCCCCCCcccc
Confidence 5689999999 999995 45 9999999999999986543 589999998864
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.11 E-value=3.8e-11 Score=108.83 Aligned_cols=74 Identities=19% Similarity=0.269 Sum_probs=62.5
Q ss_pred hhccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCC--CCccccc--cCcchHHHHHHHHHH
Q 019461 124 EISIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPH--CRAVVQF--VGRNHYLHNIEQSIL 199 (340)
Q Consensus 124 ~~~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~--Cr~~~~~--~~~n~~l~~lve~~~ 199 (340)
.+.....+++||||+++|.+||+...|||+||+.||..|+... +...||+ |++.+.. +.+|..|.++++.+.
T Consensus 174 ~v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~----~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k 249 (267)
T 3htk_C 174 QIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGY----TTRDCPQAACSQVVSMRDFVRDPIMELRCKIAK 249 (267)
T ss_dssp CCCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTC----SCEECSGGGCSCEECGGGEEECHHHHHHHHHHH
T ss_pred eecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhC----CCCCCCcccccCcCchhhCCcCHHHHHHHHHHH
Confidence 3444568899999999999999865999999999999999753 2478999 9998766 889999999998875
Q ss_pred Hh
Q 019461 200 QA 201 (340)
Q Consensus 200 ~~ 201 (340)
..
T Consensus 250 ~r 251 (267)
T 3htk_C 250 MK 251 (267)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 69
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=2.6e-11 Score=87.96 Aligned_cols=49 Identities=29% Similarity=0.805 Sum_probs=42.9
Q ss_pred ccCCceeccccccccCc-------cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461 128 DIEHAKCCICLNIWHDV-------VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~P-------v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 183 (340)
..+.+.|+||++.|.+| +.+ +|||.||..||.+|+... ..||.||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~------~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA------NTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHHC------SSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHcC------CCCCCCCCccC
Confidence 45788999999999988 666 999999999999999875 48999998865
No 70
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.09 E-value=5.9e-11 Score=86.06 Aligned_cols=50 Identities=34% Similarity=0.850 Sum_probs=43.3
Q ss_pred cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
++...|+||++.+.+|+.+++|||.||..|+.+|+... ..||.||+.+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~------~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN------PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS------CSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc------CcCcCCChhhHh
Confidence 45679999999999985555999999999999999865 389999998765
No 71
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.08 E-value=2e-11 Score=101.87 Aligned_cols=51 Identities=20% Similarity=0.434 Sum_probs=44.5
Q ss_pred ccccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccc
Q 019461 126 SIDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVV 182 (340)
Q Consensus 126 ~~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~ 182 (340)
...++++.|+||+++|.+|+++ +|||+||..||.+|+.... ..||.||..+
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~-~CgH~FC~~Ci~~~~~~~~-----~~CP~Cr~~~ 76 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQA-QCGHRYCSFCLASILSSGP-----QNCAACVHEG 76 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHGGGSC-----EECHHHHHTT
T ss_pred ccCCcCcCCCCCChhhcCcEEC-CCCCccCHHHHHHHHhcCC-----CCCCCCCCcc
Confidence 3445789999999999999998 9999999999999997543 5899999875
No 72
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.08 E-value=4.7e-11 Score=85.26 Aligned_cols=48 Identities=29% Similarity=0.837 Sum_probs=42.4
Q ss_pred CCceeccccccccCc-------cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 130 EHAKCCICLNIWHDV-------VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 130 e~l~C~IC~~~~~~P-------v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
+.+.|+||++.+.+| +.+ +|||.||..|+.+|+... ..||.||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~------~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA------NTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHHC------SBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHcC------CCCCCCCccCCc
Confidence 568999999999987 666 999999999999999875 489999998764
No 73
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.07 E-value=5.7e-11 Score=101.99 Aligned_cols=63 Identities=22% Similarity=0.462 Sum_probs=52.8
Q ss_pred ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHH
Q 019461 128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQ 196 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve 196 (340)
..+.+.|+||+++|.+|+++ +|||+||..|+.+|+..+. ..||.||..+.. +.++..+.+++.
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~~-----~~CP~Cr~~~~~~~~~~~~~~~~~i~ 79 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDAG-----HKCPVDNEILLENQLFPDNFAKREIL 79 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHHC-----SBCTTTCCBCCGGGCEECHHHHHHHH
T ss_pred CCCCCCCCCCChhhcCcEEC-CCCCHHHHHHHHHHHHhCC-----CCCCCCccCcchhhhhhhHHHHHHHh
Confidence 44789999999999999998 9999999999999998653 489999998876 456666666554
No 74
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=5.7e-11 Score=83.22 Aligned_cols=48 Identities=31% Similarity=0.829 Sum_probs=40.2
Q ss_pred cccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCC
Q 019461 127 IDIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHC 178 (340)
Q Consensus 127 ~~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~C 178 (340)
...+.+.|+||++.+.+|+.+ +|||+||..||.+|+.... ....||.|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~---~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVII-ECGHNFCKACITRWWEDLE---RDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCC-SSCCCCCHHHHHHHTTSSC---CSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeC-CCCCccCHHHHHHHHHhcC---CCCCCCCC
Confidence 345789999999999999998 9999999999999976421 24689988
No 75
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.03 E-value=4e-11 Score=83.92 Aligned_cols=46 Identities=28% Similarity=0.714 Sum_probs=40.5
Q ss_pred cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
.++++|+||++.|.+|+++ +|||+||..|+..| ...||.||+.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~---------~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLL-PCLHTLCSGCLEAS---------GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCS-TTSCCSBTTTCSSS---------SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEc-CCCCcccHHHHccC---------CCCCCcCCcEeec
Confidence 4789999999999999998 99999999999762 2589999998765
No 76
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.03 E-value=1.2e-10 Score=80.62 Aligned_cols=47 Identities=30% Similarity=0.679 Sum_probs=40.4
Q ss_pred CCceeccccccccC----ccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461 130 EHAKCCICLNIWHD----VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183 (340)
Q Consensus 130 e~l~C~IC~~~~~~----Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 183 (340)
++..|+||++.|.+ ++.+ +|+|.||..|+.+|+... ..||.||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~------~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVL-PCGHLLHRTCYEEMLKEG------YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEEC-TTSCEEETTHHHHHHHHT------CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEec-CCCCcccHHHHHHHHHcC------CcCCCCCCcCC
Confidence 56789999999966 5555 999999999999999875 48999998764
No 77
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.03 E-value=8.4e-11 Score=81.53 Aligned_cols=48 Identities=33% Similarity=0.784 Sum_probs=41.3
Q ss_pred cCCceeccccccccC---ccEeCC-CCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461 129 IEHAKCCICLNIWHD---VVTVAP-CLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~---Pv~l~p-CgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 183 (340)
++...|+||++.|.+ ++.+ + |+|.||..|+.+|++.. ..||.||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~-~~C~H~f~~~Ci~~w~~~~------~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFL-PRCGHGFHAECVDMWLGSH------STCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEEC-SSSCCEECTTHHHHTTTTC------CSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEEC-CCCCCcccHHHHHHHHHcC------CcCcCCCCEeE
Confidence 467899999999987 6777 7 99999999999999764 48999998764
No 78
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.01 E-value=1.5e-10 Score=86.73 Aligned_cols=51 Identities=24% Similarity=0.574 Sum_probs=41.6
Q ss_pred ccCCceecccccccc--CccEeCC--CCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 128 DIEHAKCCICLNIWH--DVVTVAP--CLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~--~Pv~l~p--CgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
.+++++||||++.+. +++.+ | |||+||..|+.+++... ...||.||+.+..
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~-p~~CGH~fC~~Cl~~~~~~~-----~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFF-PCTCGYQICRFCWHRIRTDE-----NGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCC-SSTTSCCCCHHHHHHHTTSS-----CSBCTTTCCBCSS
T ss_pred cccCCcCCccCccCcccccccc-ccCCCCCcCHHHHHHHHhcC-----CCCCCCCCCccCC
Confidence 457899999999884 45555 6 99999999999987543 3689999998875
No 79
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=99.01 E-value=1.1e-09 Score=101.51 Aligned_cols=75 Identities=11% Similarity=0.011 Sum_probs=59.9
Q ss_pred ceeEeeCCceEEecc-------cccCC-ccccceEEEEEeCC---------CCeEEEEec-cCCceEeccEecCCCceee
Q 019461 28 ADVDISSNEVVICSE-------ITSSS-SDKHEWCKITRNSD---------LHSAKMQNK-SSNAILVDDTMVQNEEVVD 89 (340)
Q Consensus 28 ~~~~l~~~~~~iGr~-------~~~~~-~vS~~H~~i~~~~~---------~~~~~i~D~-StNgt~vng~~i~~~~~~~ 89 (340)
..+.|..++++|||. |.+++ .|||+||.|.++.. ...++|+|| |+|||||||++|... .+.
T Consensus 14 kr~~L~pg~YlIGR~~~~~~~lI~idD~SISRqHA~I~v~~v~~~dg~~~~~~~l~I~DLgSknGTfVNGerI~~~-~~~ 92 (325)
T 3huf_A 14 KSRILFPGTYIVGRNVSDDSSHIQVISKSISKRHARFTILTPSEKDYFTGGPCEFEVKDLDTKFGTKVNEKVVGQN-GDS 92 (325)
T ss_dssp CCEEECSEEEEEESSCCCBTTEEECCCTTSCSSCEEEEECCCCHHHHHHCCCCCEEEEECSCSSCEEETTEECCTT-CEE
T ss_pred eEEEecCCeEEECCCCCccCceeecCCCCccccceEEEEecccccccccCCcceEEEEECCCCCCEEECCEECCCc-eee
Confidence 456777778999992 46677 99999999988631 235999999 999999999999754 455
Q ss_pred c-cCCCeeccCCCCc
Q 019461 90 I-KCGTEIIPGPDRE 103 (340)
Q Consensus 90 l-~~gd~I~lg~~~~ 103 (340)
| .+||+|.+|....
T Consensus 93 L~~dgd~I~fG~~~~ 107 (325)
T 3huf_A 93 YKEKDLKIQLGKCPF 107 (325)
T ss_dssp ECSSEEEEEETTCSS
T ss_pred ecCCCCEEEecCCcc
Confidence 5 5799999997654
No 80
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=2.2e-10 Score=84.77 Aligned_cols=48 Identities=31% Similarity=0.831 Sum_probs=42.0
Q ss_pred cCCceeccccccccCc---cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461 129 IEHAKCCICLNIWHDV---VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~P---v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 183 (340)
.+...|+||++.|.++ +.+ +|+|.||..||.+|++... .||.||+.+.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~------~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVL-PCNHEFHAKCVDKWLKANR------TCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEE-TTTEEEETTHHHHHHHHCS------SCTTTCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEE-CCCCHhHHHHHHHHHHcCC------cCcCcCCcCC
Confidence 4678999999999887 666 9999999999999998753 8999998865
No 81
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.99 E-value=2.9e-10 Score=82.66 Aligned_cols=50 Identities=38% Similarity=0.904 Sum_probs=41.8
Q ss_pred ccCCceecccccccc---CccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 128 DIEHAKCCICLNIWH---DVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~---~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
..+...|+||++.|. .++.+ +|+|.||..||.+|+.... .||.||..+..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~~~------~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRL-PCMHLFHQVCVDQWLITNK------KCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEEC-TTSCEEEHHHHHHHHHHCS------BCTTTCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcEEEe-CCCCHHHHHHHHHHHHcCC------CCcCcCccccC
Confidence 346789999999885 34555 9999999999999998764 79999998765
No 82
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.97 E-value=2e-10 Score=85.60 Aligned_cols=51 Identities=27% Similarity=0.574 Sum_probs=42.3
Q ss_pred ccCCceeccccccccCc--cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 128 DIEHAKCCICLNIWHDV--VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~P--v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
..+.+.|+||++.|.++ +..++|+|.||..||.+|+... ..||.||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~------~~CP~Cr~~~~~ 64 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH------DSCPVCRKSLTG 64 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT------CSCTTTCCCCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC------CcCcCcCCccCC
Confidence 34678999999999865 2334999999999999999754 489999998875
No 83
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.97 E-value=3.7e-10 Score=86.91 Aligned_cols=48 Identities=33% Similarity=0.779 Sum_probs=41.9
Q ss_pred cCCceeccccccccC---ccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461 129 IEHAKCCICLNIWHD---VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~---Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 183 (340)
.++..|+||++.|.+ ++.+ +|+|.||..||..|+... ..||.||..+.
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~~------~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATEL-PCHHYFHKPCVSIWLQKS------GTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEE-TTTEEEEHHHHHHHHTTT------CBCTTTCCBSS
T ss_pred CCCCCCcccChhhcCCCcEEec-CCCChHHHHHHHHHHHcC------CcCcCcCccCC
Confidence 467899999999987 7777 999999999999999765 38999998865
No 84
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=5.9e-10 Score=82.10 Aligned_cols=52 Identities=29% Similarity=0.712 Sum_probs=42.7
Q ss_pred cccCCceeccccccccCc--cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 127 IDIEHAKCCICLNIWHDV--VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 127 ~~~e~l~C~IC~~~~~~P--v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
...++..|+||++.|.++ +..++|+|.||..||.+|++... .||.||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~------~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK------VCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS------BCTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC------cCCCcCccccc
Confidence 344678999999999765 22339999999999999998753 89999998865
No 85
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.93 E-value=3.3e-10 Score=92.51 Aligned_cols=49 Identities=29% Similarity=0.829 Sum_probs=43.6
Q ss_pred cCCceeccccccccCc-------cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 129 IEHAKCCICLNIWHDV-------VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~P-------v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
.+++.|+||++.|.+| +.+ +|||+||..||.+|++... .||.||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~------~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNAN------TCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTTCS------BCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHHHhCC------CCCCCCCcCcc
Confidence 4679999999999999 777 9999999999999997653 89999998764
No 86
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=98.92 E-value=2.9e-09 Score=82.06 Aligned_cols=76 Identities=18% Similarity=0.134 Sum_probs=57.7
Q ss_pred CceeEeeCC-ceEEec----ccccCC-ccccceEEEEEeCCCCeEEEEeccCCc-eEeccEecCCCceeeccCCCeeccC
Q 019461 27 FADVDISSN-EVVICS----EITSSS-SDKHEWCKITRNSDLHSAKMQNKSSNA-ILVDDTMVQNEEVVDIKCGTEIIPG 99 (340)
Q Consensus 27 ~~~~~l~~~-~~~iGr----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~StNg-t~vng~~i~~~~~~~l~~gd~I~lg 99 (340)
.+.+.|..+ .+.||| ++.+++ .||+.||.|.+..++ .++.. |+|| +||||+++ +.+.|.+||.|
T Consensus 12 ~p~v~l~~~~~~rIGR~~~~~l~LddpsVs~~HAti~~~~~G--~~~l~-S~nGtVFVNGqrv---~~~~I~~gDtI--- 82 (102)
T 3uv0_A 12 LPAILLKADTIYRIGRQKGLEISIADESMELAHATACILRRG--VVRLA-ALVGKIFVNDQEE---TVVDIGMENAV--- 82 (102)
T ss_dssp SCCEECCTTCCEEEESSTTSTEECCCTTSCTTCEEEEEEETT--EEEEE-ESSSCEEETTEEE---SEEEECGGGCB---
T ss_pred cccEEeecCcEEEEcCCCCCcEEECCcccccceEEEEecCCc--eEEEE-eccCcEEECCEEe---eeEEccCCccc---
Confidence 455666554 499999 577888 999999999998766 55544 9999 49999999 47899999987
Q ss_pred CCCcceecccccccc
Q 019461 100 PDREVYLNFRFKVVP 114 (340)
Q Consensus 100 ~~~~~~~~y~f~i~s 114 (340)
++.+.+.|..++
T Consensus 83 ---~g~v~lrFGnve 94 (102)
T 3uv0_A 83 ---AGKVKLRFGNVE 94 (102)
T ss_dssp ---TTEEEEEETTEE
T ss_pred ---ccEEEEEecCEE
Confidence 444555554443
No 87
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=1.1e-10 Score=85.25 Aligned_cols=49 Identities=35% Similarity=0.946 Sum_probs=42.5
Q ss_pred ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
..+.+.|+||++.+.+ +.+ +|+|.||..|+.+|+... ..||.||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~-~CgH~fc~~Ci~~~~~~~------~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-LIL-PCAHSFCQKCIDKWSDRH------RNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCSSSCCSCCS-EEE-TTTEEECHHHHHHSSCCC------SSCHHHHHCTTC
T ss_pred CCCCCCCeeCCcCccC-ccc-CCCCcccHHHHHHHHHCc------CcCCCcCCcccC
Confidence 3467899999999999 777 999999999999998743 589999988765
No 88
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.89 E-value=2.4e-10 Score=84.57 Aligned_cols=47 Identities=34% Similarity=0.651 Sum_probs=41.7
Q ss_pred cccCCceeccccccccCccEeCCCCCc-ccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 127 IDIEHAKCCICLNIWHDVVTVAPCLHN-FCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 127 ~~~e~l~C~IC~~~~~~Pv~l~pCgH~-FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
...+++.|+||++.+.+|+.+ ||||. ||..|+..| ..||.||+.+..
T Consensus 20 ~~~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~----------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 20 RLQEEKLCKICMDRNIAIVFV-PCGHLVTCKQCAEAV----------DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHTBCTTTSSSBCCEEEE-TTCCBCCCHHHHTTC----------SBCTTTCCBCSE
T ss_pred cCccCCCCCCCCCCCCCEEEc-CCCChhHHHHhhhcC----------ccCCCcCcCccC
Confidence 445778999999999999999 99999 999999887 279999998875
No 89
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=1.7e-09 Score=81.41 Aligned_cols=49 Identities=35% Similarity=0.724 Sum_probs=40.4
Q ss_pred CCceeccccccccC--------------ccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 130 EHAKCCICLNIWHD--------------VVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 130 e~l~C~IC~~~~~~--------------Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
++..|+||++.|.+ ++.+.+|+|.|+..||.+|+.... +||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~------~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN------RCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC------BCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC------CCCCcCCCcch
Confidence 56789999999876 556635999999999999998754 89999998653
No 90
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.82 E-value=1.9e-09 Score=86.13 Aligned_cols=54 Identities=20% Similarity=0.513 Sum_probs=41.8
Q ss_pred CCceeccccccccCcc-----------------EeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 130 EHAKCCICLNIWHDVV-----------------TVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 130 e~l~C~IC~~~~~~Pv-----------------~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
.+..|+||++.|.+|. .+++|+|.||..||..|+.... ......||.||+.+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~-~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN-KDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC-CSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc-CCCCCcCCCCCCccCC
Confidence 4569999999997764 1449999999999999996432 1124689999998765
No 91
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=98.80 E-value=2.2e-08 Score=86.96 Aligned_cols=91 Identities=20% Similarity=0.168 Sum_probs=72.3
Q ss_pred ccEEEEeCCC-----CCceeEeeCCceEEec-------ccccCC-ccccceEEEEEeCCC---CeEEEEeccCCceEecc
Q 019461 16 IWAKLEPSDS-----RFADVDISSNEVVICS-------EITSSS-SDKHEWCKITRNSDL---HSAKMQNKSSNAILVDD 79 (340)
Q Consensus 16 ~~~~L~~~~~-----~~~~~~l~~~~~~iGr-------~~~~~~-~vS~~H~~i~~~~~~---~~~~i~D~StNgt~vng 79 (340)
.-+.|+.+++ ..-.+.|..+.++||| ||.+.+ .|+..||.|..+.++ ..++|...+.+.|||||
T Consensus 67 ~~PhLvnLn~Dp~ls~~l~y~L~~g~t~VGr~~~~~~~dI~L~G~~I~~~Hc~i~~~~~~~~~~~vtl~p~~~a~t~VNG 146 (184)
T 4egx_A 67 KTPHLVNLNEDPLMSECLLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVNG 146 (184)
T ss_dssp SSCEEEECCCCTTCSSCSEEECCSEEEEEECSSSSSCCSEECCSTTCCSEEEEEEEECCSSCSCEEEEEECTTCCEEETT
T ss_pred CCceEEeccCCcccCceEEEEECCCcCcCCCCCcCCCCeEEECccccccccEEEEEcCCCCceEEEEEeeCCCCeEEEcC
Confidence 4567888765 2234578888999998 688988 999999999987543 35888999999999999
Q ss_pred EecCCCceeeccCCCeeccCCCCcceecccccc
Q 019461 80 TMVQNEEVVDIKCGTEIIPGPDREVYLNFRFKV 112 (340)
Q Consensus 80 ~~i~~~~~~~l~~gd~I~lg~~~~~~~~y~f~i 112 (340)
++|. ..+.|.+||+|.+|. .-.|.|..
T Consensus 147 ~~I~--~~~~L~~GDrI~lG~----~h~Frfn~ 173 (184)
T 4egx_A 147 KKVT--EPSILRSGNRIIMGK----SHVFRFNH 173 (184)
T ss_dssp EECC--SCEECCTTCEEEETT----TEEEEEEC
T ss_pred EEcc--ccEEcCCCCEEEECC----CCEEEECC
Confidence 9996 468999999999997 23466654
No 92
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=1.7e-09 Score=80.14 Aligned_cols=46 Identities=35% Similarity=0.683 Sum_probs=39.8
Q ss_pred ccCCceeccccccccCccEeCCCCCc-ccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 128 DIEHAKCCICLNIWHDVVTVAPCLHN-FCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~-FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
..+.+.|+||++.+.+|+.+ ||||. ||..|+.+. ..||.||..+..
T Consensus 22 ~~~~~~C~IC~~~~~~~~~~-pCgH~~~C~~C~~~~----------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIVFV-PCGHLVTCKQCAEAV----------DKCPMCYTVITF 68 (75)
T ss_dssp HHHHHSCSSSCSSCCCBCCS-SSCCCCBCHHHHHHC----------SBCTTTCCBCCC
T ss_pred CCCCCCCCcCCCCCCCEEEe-cCCCHHHHHHHhhCC----------CCCccCCceecC
Confidence 34678999999999999998 99999 999999531 489999998876
No 93
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.74 E-value=4.3e-09 Score=81.35 Aligned_cols=52 Identities=21% Similarity=0.569 Sum_probs=41.4
Q ss_pred CCceeccccccccCccEe--CCCCCcccHhhHHHHHHhccC--CCCCcCCCC--CCcc
Q 019461 130 EHAKCCICLNIWHDVVTV--APCLHNFCNGCFSEWLRRSQE--KRSTVLCPH--CRAV 181 (340)
Q Consensus 130 e~l~C~IC~~~~~~Pv~l--~pCgH~FC~~Cl~~~~~~~~~--~~~~~~CP~--Cr~~ 181 (340)
+.++|+||++.+..|.++ .+|||.||..|+..++...-. ......||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 578999999999988664 379999999999999875311 112478999 9987
No 94
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.71 E-value=1.5e-09 Score=81.44 Aligned_cols=46 Identities=28% Similarity=0.628 Sum_probs=40.3
Q ss_pred ccCCceeccccccccCccEeCCCCCc-ccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 128 DIEHAKCCICLNIWHDVVTVAPCLHN-FCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~-FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
..+...|+||++.+.+++.+ ||||. ||..|+..| ..||.||..+..
T Consensus 15 l~~~~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~~----------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 15 LKEAMLCMVCCEEEINSTFC-PCGHTVCCESCAAQL----------QSCPVCRSRVEH 61 (79)
T ss_dssp HHHHTBCTTTSSSBCCEEEE-TTCBCCBCHHHHTTC----------SBCTTTCCBCCE
T ss_pred CCCCCEeEEeCcccCcEEEE-CCCCHHHHHHHHHhc----------CcCCCCCchhhC
Confidence 34668999999999999999 99999 999999765 279999999876
No 95
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.70 E-value=6.3e-09 Score=84.78 Aligned_cols=52 Identities=29% Similarity=0.777 Sum_probs=44.9
Q ss_pred ccccCCceeccccccccCc-------cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 126 SIDIEHAKCCICLNIWHDV-------VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 126 ~~~~e~l~C~IC~~~~~~P-------v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
....+.+.|+||++.|.+| +.+ +|||.||..|+.+|++.. ..||.||..+..
T Consensus 67 ~i~~~~~~C~iC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~------~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 67 YIGSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA------NTCPTCRKKINH 125 (133)
T ss_dssp BCSSSSCBCTTTCCBHHHHHHTTCCEEEE-TTSBEEEHHHHHHHHHHC------SBCTTTCCBCCG
T ss_pred ccCCCCCCCCCCCCccccccccCcceEeC-CCCChhhHHHHHHHHHcC------CCCCCCCCcCCh
Confidence 3456789999999999887 777 999999999999999876 499999998764
No 96
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.65 E-value=1.3e-08 Score=80.46 Aligned_cols=49 Identities=33% Similarity=0.634 Sum_probs=40.7
Q ss_pred cCCceeccccccccCc-----------------cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461 129 IEHAKCCICLNIWHDV-----------------VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~P-----------------v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 183 (340)
.++..|+||++.|.++ +.+++|+|.|+..||.+|+... .+||.||+.+.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~------~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR------QVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC------SBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC------CcCcCCCCcce
Confidence 3567899999999866 4444999999999999999865 48999999854
No 97
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.62 E-value=1.5e-08 Score=72.70 Aligned_cols=49 Identities=27% Similarity=0.488 Sum_probs=41.9
Q ss_pred CCceeccccccccCccEe-CCCCCc-ccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 130 EHAKCCICLNIWHDVVTV-APCLHN-FCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 130 e~l~C~IC~~~~~~Pv~l-~pCgH~-FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
++..|+||++.+.+++.+ +||||. ||..|+.+|+..+ ..||.||+.+..
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~------~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN------KPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT------CCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC------CcCCCcCcchhc
Confidence 567899999999999753 399999 8999999998754 389999998865
No 98
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.59 E-value=2.5e-08 Score=95.70 Aligned_cols=50 Identities=30% Similarity=0.682 Sum_probs=43.5
Q ss_pred cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
.....|+||++.+.+|+.+ ||||.||..|+..|+.... ..||.||..+..
T Consensus 330 ~~~~~C~ICle~~~~pv~l-pCGH~FC~~Ci~~wl~~~~-----~~CP~CR~~i~~ 379 (389)
T 2y1n_A 330 STFQLCKICAENDKDVKIE-PCGHLMCTSCLTSWQESEG-----QGCPFCRCEIKG 379 (389)
T ss_dssp TSSSBCTTTSSSBCCEEEE-TTCCEECHHHHHHHHHHTC-----SBCTTTCCBCCE
T ss_pred CCCCCCCccCcCCCCeEEe-CCCChhhHHHHHHHHhcCC-----CCCCCCCCccCC
Confidence 3458999999999999999 9999999999999998432 589999998765
No 99
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.55 E-value=3.1e-08 Score=70.78 Aligned_cols=49 Identities=20% Similarity=0.405 Sum_probs=41.2
Q ss_pred CCceeccccccccCccEe-CCCCCc-ccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 130 EHAKCCICLNIWHDVVTV-APCLHN-FCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 130 e~l~C~IC~~~~~~Pv~l-~pCgH~-FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
....|+||++...+++.+ +||||. ||..|+.+|++.+ ..||.||+.+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~------~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG------ASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT------CBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC------CcCCCcCchhhc
Confidence 456899999999998642 499998 9999999988754 489999998865
No 100
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=98.46 E-value=4.7e-07 Score=72.92 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=59.9
Q ss_pred CceeEeeCCceEEec-----ccccCC-ccccceEEEEEeCCCCeEEEEeccCCceEeccEecCCCceeeccCCCeeccCC
Q 019461 27 FADVDISSNEVVICS-----EITSSS-SDKHEWCKITRNSDLHSAKMQNKSSNAILVDDTMVQNEEVVDIKCGTEIIPGP 100 (340)
Q Consensus 27 ~~~~~l~~~~~~iGr-----~~~~~~-~vS~~H~~i~~~~~~~~~~i~D~StNgt~vng~~i~~~~~~~l~~gd~I~lg~ 100 (340)
...+.|..+.++||. |+.+.| .||+.||+|.+..++ |+|. -|+||||+||+++..+. .|.+|+.+.+|.
T Consensus 16 G~~l~L~~~~~~IGs~~~~~DLvL~D~~Vs~~H~~L~~~~~g--~~L~-~s~ngt~vdG~~v~~~~--~L~~g~~l~lG~ 90 (123)
T 4a0e_A 16 GVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEG--IRLT-DSAEPLLQEGLPVPLGT--LLRAGSCLEVGF 90 (123)
T ss_dssp TCEEEECSEEEEEESCTTTCSEECCCTTSCSSCEEEEEETTE--EEEE-EESSCCEETTEECCTTC--BCCTTSCEEETT
T ss_pred CcEEEcCCCcEEECCCCCCCCEEEeCCCccceeEEEEECCCe--EEEE-eccCCEEECCEEccccc--ccCCCCEEEEcc
Confidence 456789999999999 577888 999999999998776 9997 79999999999977653 889999998886
No 101
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=1e-07 Score=69.22 Aligned_cols=46 Identities=35% Similarity=0.779 Sum_probs=39.6
Q ss_pred ccCCceeccccccccCccEeCCCCCc-ccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 128 DIEHAKCCICLNIWHDVVTVAPCLHN-FCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~-FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
..+...|.||++...+++.+ ||||. ||..|+.. . ..||.||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~----~------~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLL-PCRHTCLCDGCVKY----F------QQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEET-TTTBCCSCTTHHHH----C------SSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEE-CCCChhhhHHHHhc----C------CCCCCCCcchhc
Confidence 34678999999999999888 99999 99999973 1 489999998876
No 102
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.43 E-value=1.1e-07 Score=67.41 Aligned_cols=48 Identities=13% Similarity=0.172 Sum_probs=42.0
Q ss_pred CceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 131 HAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 131 ~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
.+.|+|+++++.+||.+.++||+|++.||.+|+.... +||..++.+..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~------~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG------NDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS------BCTTTCCBCCG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCC------CCcCCcCCCCh
Confidence 4789999999999988757999999999999998654 69999988765
No 103
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.40 E-value=4e-08 Score=79.01 Aligned_cols=48 Identities=33% Similarity=0.649 Sum_probs=0.9
Q ss_pred CCceeccccccccCc-----------------cEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461 130 EHAKCCICLNIWHDV-----------------VTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183 (340)
Q Consensus 130 e~l~C~IC~~~~~~P-----------------v~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 183 (340)
+.-.|+||++.|.++ +.+++|+|.|+..||.+|+.... +||.||+.+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~------~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ------VCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCC------cCCCCCCeee
Confidence 456899999999763 34348999999999999998754 8999998754
No 104
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.35 E-value=9.7e-08 Score=90.77 Aligned_cols=48 Identities=29% Similarity=0.649 Sum_probs=42.3
Q ss_pred ccccCCceeccccccccCccEeCCCCCc-ccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 126 SIDIEHAKCCICLNIWHDVVTVAPCLHN-FCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 126 ~~~~e~l~C~IC~~~~~~Pv~l~pCgH~-FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
....+++.|+||++.+.+|+.+ ||||. ||..|+..| ..||.||..+..
T Consensus 290 ~~l~~~~~C~IC~~~~~~~v~l-pCgH~~fC~~C~~~~----------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 290 RRLQEERTCKVCMDKEVSVVFI-PCGHLVVCQECAPSL----------RKCPICRGIIKG 338 (345)
T ss_dssp HHHHTTCBCTTTSSSBCCEEEE-TTCCEEECTTTGGGC----------SBCTTTCCBCCE
T ss_pred HhCcCCCCCCccCCcCCceEEc-CCCChhHhHHHHhcC----------CcCCCCCCCccC
Confidence 3445789999999999999999 99999 999999876 279999998875
No 105
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=4.8e-07 Score=67.76 Aligned_cols=51 Identities=24% Similarity=0.576 Sum_probs=42.0
Q ss_pred cCCceeccccccc--cCccEeCCCC-----CcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 129 IEHAKCCICLNIW--HDVVTVAPCL-----HNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 129 ~e~l~C~IC~~~~--~~Pv~l~pCg-----H~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
.++..|.||++.+ .+++.+ ||. |.|...||.+|+..+. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~-pC~C~Gs~h~fH~~Cl~~Wl~~~~----~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLIT-PCHCTGSLHFVHQACLQQWIKSSD----TRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEEC-SSSCCSSSCCEETTHHHHHHHHHC----CSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEe-ccccCCcCCeeCHHHHHHHHhhCC----CCCCCCCCCeeec
Confidence 4667999999887 467765 996 9999999999998753 3589999998764
No 106
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.76 E-value=1.6e-05 Score=58.37 Aligned_cols=52 Identities=17% Similarity=0.417 Sum_probs=41.3
Q ss_pred cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
+....|+||.+++..-..-..|+|.|...||.+|++... ..+||.||.....
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~----~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA----EPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCS----SCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcC----CCCCCCCcCcCCC
Confidence 355689999999975554447999999999999997652 2589999987654
No 107
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=97.71 E-value=1.9e-05 Score=71.15 Aligned_cols=65 Identities=11% Similarity=0.059 Sum_probs=49.7
Q ss_pred EeeCCceEEec----ccccCCccccceEEEEEeC-C-CCeEEEEec-cCCce-EeccEecCCCceeecc-CCCeeccCC
Q 019461 31 DISSNEVVICS----EITSSSSDKHEWCKITRNS-D-LHSAKMQNK-SSNAI-LVDDTMVQNEEVVDIK-CGTEIIPGP 100 (340)
Q Consensus 31 ~l~~~~~~iGr----~~~~~~~vS~~H~~i~~~~-~-~~~~~i~D~-StNgt-~vng~~i~~~~~~~l~-~gd~I~lg~ 100 (340)
.+....++||| +|.+++. .|+.|.++- . .+.|+|+|+ |+||| ||||+++... ..|. +||.|.+|.
T Consensus 88 ~~~~~~itIG~~~~~dI~l~~~---~~~~~~~~~~~~~~~~~l~~l~s~ngtvyvNg~~i~~~--~~L~~~GD~I~ig~ 161 (238)
T 1wv3_A 88 PSIQDTMTIGPNAYDDMVIQSL---MNAIIIKDFQSIQESQYVRIVHDKNTDVYINYELQEQL--TNKAYIGDHIYVEG 161 (238)
T ss_dssp CSSCSEEEEESSTTSSEECTTC---SSCEEEECGGGHHHHCEEEEECCTTCCEEETTEECCSS--EEEEETTCEEEETT
T ss_pred ecCCceEEEeCCCCCeEEeCCC---eeEEEEecccCcCCcEEEEEccCCCCCEEECCEEeccc--eeccCCcCEEEECC
Confidence 34444899999 6888766 368777761 1 025999999 79996 9999999654 4799 999999875
No 108
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.68 E-value=2.3e-05 Score=60.20 Aligned_cols=47 Identities=28% Similarity=0.519 Sum_probs=38.5
Q ss_pred eeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 133 KCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 133 ~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
.|++|.-.+..-..++||.|.||.+|+..|.++.. ..||.|+..+..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~-----k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGD-----KMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTC-----CBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccC-----CCCcCcCCeeee
Confidence 58888887765545559999999999999987654 589999999876
No 109
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.46 E-value=0.00012 Score=51.52 Aligned_cols=50 Identities=26% Similarity=0.508 Sum_probs=40.3
Q ss_pred cCCceeccccccccCccEeCCCCC-----cccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461 129 IEHAKCCICLNIWHDVVTVAPCLH-----NFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~Pv~l~pCgH-----~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 183 (340)
++...|.||++...++..+ ||.+ .|...||.+|+..+. ...||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~-PC~C~gs~~~~H~~Cl~~W~~~~~----~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFR-ACGCTGELENVHRSCLSTWLTISR----NTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCC-SCCCSSGGGSCCHHHHHHHHHHHT----CSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceec-CcCCCCchhhhHHHHHHHHHHhCC----CCccCCCCCeee
Confidence 4677999999987778765 9764 899999999998643 368999998764
No 110
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.42 E-value=8.9e-05 Score=57.42 Aligned_cols=33 Identities=27% Similarity=0.606 Sum_probs=28.0
Q ss_pred CCceecccccc-ccCccE--eCCCCCcccHhhHHHHH
Q 019461 130 EHAKCCICLNI-WHDVVT--VAPCLHNFCNGCFSEWL 163 (340)
Q Consensus 130 e~l~C~IC~~~-~~~Pv~--l~pCgH~FC~~Cl~~~~ 163 (340)
+++.|+||.+. +.+|+. + .|+|+||..|+..+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~-~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCV-TCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEET-TTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECC-cCChHHhHHHCHHHh
Confidence 57899999975 778887 6 999999999998743
No 111
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.89 E-value=0.0004 Score=65.15 Aligned_cols=57 Identities=28% Similarity=0.626 Sum_probs=41.4
Q ss_pred ccCCceeccccccccC----ccE---eCCCCCcccHhhHHHHHHhccCCC-----CCcCCCCCCccccc
Q 019461 128 DIEHAKCCICLNIWHD----VVT---VAPCLHNFCNGCFSEWLRRSQEKR-----STVLCPHCRAVVQF 184 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~----Pv~---l~pCgH~FC~~Cl~~~~~~~~~~~-----~~~~CP~Cr~~~~~ 184 (340)
.+....|+||...+.+ |.. ...|+|.|...||.+|++...... -...||.||+++..
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 4567789999999876 311 126999999999999998643111 12479999998764
No 112
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=96.45 E-value=0.0024 Score=67.35 Aligned_cols=69 Identities=16% Similarity=0.113 Sum_probs=61.3
Q ss_pred cCCceeccccccccCccEeCCCC-CcccHhhHHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHHHHHhccc
Q 019461 129 IEHAKCCICLNIWHDVVTVAPCL-HNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQSILQAHSS 204 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~Pv~l~pCg-H~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~~~~~~~~ 204 (340)
-+++.|||-++++.|||++ |-| ++|=+..|.+|+... .+||.=|+++.. +.+|..|+..++.+...+..
T Consensus 889 P~~F~cPIs~~lM~DPVil-psG~~TydR~~I~~wl~~~------~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDPVIL-PASKMNIDRSTIKAHLLSD------STDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp CGGGBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHHTTC------CBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred cHHhCCcchhhHHhCCeEc-CCCCEEECHHHHHHHHhcC------CCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence 3689999999999999999 998 699999999999764 389999998876 88999999999999887654
No 113
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=92.91 E-value=0.06 Score=48.14 Aligned_cols=51 Identities=18% Similarity=0.450 Sum_probs=40.7
Q ss_pred CCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 130 EHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 130 e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
....|.||.++...-+.-..|+|.|...|+..|++... ...||.|+..-..
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~----~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA----EPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCS----SCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCC----CCCCCCCCCCCCC
Confidence 47789999999986666634999999999999987542 3689999886543
No 114
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=87.91 E-value=0.63 Score=29.23 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=22.7
Q ss_pred CCCccccccccccccccccCCccCCCCCcc
Q 019461 287 SVPQHCLGCDRAFCGAYWHAQMVARSDSQP 316 (340)
Q Consensus 287 ~~~~~C~~C~~~~C~~y~~~~~~~~~~~~~ 316 (340)
.+.+||..++.++|.++........|.+.|
T Consensus 12 ~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~ 41 (42)
T 1fre_A 12 RLKLYCKDDGTLSCVICRDSLKHASHNFLP 41 (42)
T ss_dssp SCCCCCCSSSSSSCCTTSSCSSCTTCCCCC
T ss_pred eeeEEeCCCCeEEeccCCCCCCCCCCcEec
Confidence 588999999999999998655555554443
No 115
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=86.32 E-value=0.49 Score=34.53 Aligned_cols=48 Identities=29% Similarity=0.568 Sum_probs=35.7
Q ss_pred cCCceeccccccccCccEeCCC----CCcccHhhHHHHHHhccCCCCCcCCCCC
Q 019461 129 IEHAKCCICLNIWHDVVTVAPC----LHNFCNGCFSEWLRRSQEKRSTVLCPHC 178 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~Pv~l~pC----gH~FC~~Cl~~~~~~~~~~~~~~~CP~C 178 (340)
...|.|.+|.+.|.+--.+ .| +|.||..|-....+... ....+.||.=
T Consensus 13 ~a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~q~-~~~EvyCPSG 64 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKAQG-ATGEVYCPSG 64 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHHHH-SSSCCCCTTS
T ss_pred CCeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHhcC-CCCcEECCCC
Confidence 3679999999999876554 44 69999999988877643 2345667754
No 116
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=85.37 E-value=0.99 Score=42.67 Aligned_cols=62 Identities=19% Similarity=0.339 Sum_probs=46.5
Q ss_pred CceeccccccccCccEeCCCCCcccHhh--HHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHH
Q 019461 131 HAKCCICLNIWHDVVTVAPCLHNFCNGC--FSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQ 196 (340)
Q Consensus 131 ~l~C~IC~~~~~~Pv~l~pCgH~FC~~C--l~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve 196 (340)
.|.||+=+..+..|+.-..|.|.-|.+- +.....+ .+...||+|.+.+.. +..+..+..+++
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~----~~~W~CPIC~k~~~~~dL~ID~~~~~IL~ 314 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQ----IPTWQCPVCQIDIALENLAISEFVDDILQ 314 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHH----SCCCBCTTTCCBCCGGGEEEBHHHHHHHT
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhc----CCceeCCCCCcccCHHHeeEcHHHHHHHH
Confidence 5899999999999999989999966543 3332222 346899999988765 777777777664
No 117
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=85.11 E-value=0.76 Score=31.67 Aligned_cols=32 Identities=16% Similarity=0.354 Sum_probs=23.5
Q ss_pred CCCccccccccccccccccCCccCCCCCcccc
Q 019461 287 SVPQHCLGCDRAFCGAYWHAQMVARSDSQPMC 318 (340)
Q Consensus 287 ~~~~~C~~C~~~~C~~y~~~~~~~~~~~~~~~ 318 (340)
.+.+||..|+.++|.++.-...+-.|.+.|+-
T Consensus 18 ~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l~ 49 (64)
T 2d8u_A 18 KINIYCLTCEVPTCSMCKVFGIHKACEVAPLQ 49 (64)
T ss_dssp CCCSEESSSCCCCCSHHHHSSSTTSSCEECTT
T ss_pred ccceEcCcCCceeCccccCCCcCCCCCeeCHH
Confidence 58899999999999999755445555554443
No 118
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=83.43 E-value=1.5 Score=41.27 Aligned_cols=63 Identities=14% Similarity=0.285 Sum_probs=47.4
Q ss_pred CceeccccccccCccEeCCCCCcccHhh--HHHHHHhccCCCCCcCCCCCCccccc--cCcchHHHHHHHH
Q 019461 131 HAKCCICLNIWHDVVTVAPCLHNFCNGC--FSEWLRRSQEKRSTVLCPHCRAVVQF--VGRNHYLHNIEQS 197 (340)
Q Consensus 131 ~l~C~IC~~~~~~Pv~l~pCgH~FC~~C--l~~~~~~~~~~~~~~~CP~Cr~~~~~--~~~n~~l~~lve~ 197 (340)
.|.||+=...+..|+....|.|.-|.+- +...... .+...||.|.+.+.. +..+..+.+++..
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~----~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEK----KPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHH----SCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhh----CCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 5789999999999999889999955543 3333222 346899999998865 7778777777654
No 119
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=80.10 E-value=0.37 Score=31.37 Aligned_cols=28 Identities=14% Similarity=0.312 Sum_probs=20.5
Q ss_pred CCCccccccccccccccccCCccCCCCC
Q 019461 287 SVPQHCLGCDRAFCGAYWHAQMVARSDS 314 (340)
Q Consensus 287 ~~~~~C~~C~~~~C~~y~~~~~~~~~~~ 314 (340)
.+++||..|+.++|.++.-...+..|.+
T Consensus 16 ~l~lfC~~d~~~iC~~C~~~~~H~~H~~ 43 (48)
T 3ddt_A 16 KINIYCLTCEVPTCSMCKVFGIHKACEV 43 (48)
T ss_dssp BCCEEETTTTEEECHHHHHHSTTTTSCE
T ss_pred cccEEcCCCCeeEcccccCCCcCCCCcE
Confidence 5889999999999999864333444443
No 120
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=79.07 E-value=0.68 Score=30.74 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=21.8
Q ss_pred CCCccccccccccccccccCCccCCCCCcc
Q 019461 287 SVPQHCLGCDRAFCGAYWHAQMVARSDSQP 316 (340)
Q Consensus 287 ~~~~~C~~C~~~~C~~y~~~~~~~~~~~~~ 316 (340)
.+.+||..|+.++|..+.....+..|.+.+
T Consensus 17 ~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~ 46 (53)
T 2did_A 17 ALSLFCYEDQEAVCLICAISHTHRAHTVVP 46 (53)
T ss_dssp BCCEEESSSCSEECHHHHTSSTTTTSCEEE
T ss_pred eeeEEeCCCCeEEeccccCCCCCCCCcEee
Confidence 478999999999999998654444444433
No 121
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=76.11 E-value=1.3 Score=32.34 Aligned_cols=33 Identities=12% Similarity=0.171 Sum_probs=25.9
Q ss_pred CCCccccccccccccccccCCccCCCCCccccc
Q 019461 287 SVPQHCLGCDRAFCGAYWHAQMVARSDSQPMCS 319 (340)
Q Consensus 287 ~~~~~C~~C~~~~C~~y~~~~~~~~~~~~~~~~ 319 (340)
.+.+||..|+.++|.++.....+..|.+.++-+
T Consensus 28 ~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l~e 60 (84)
T 2dja_A 28 KVNMYCVSDDQLICALCKLVGRHRDHQVASLND 60 (84)
T ss_dssp CCCEEETTTTEEECHHHHHTSTTTTCCBCCCCS
T ss_pred cccEEcCCCCceEcccCcCCCCCCCCCccCHHH
Confidence 378999999999999998766666666666554
No 122
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=74.95 E-value=0.54 Score=35.45 Aligned_cols=46 Identities=24% Similarity=0.515 Sum_probs=34.3
Q ss_pred CCceeccccccccCccEeCCC-CCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 130 EHAKCCICLNIWHDVVTVAPC-LHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 130 e~l~C~IC~~~~~~Pv~l~pC-gH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
--+.|..|....+.- +.| -|.+|..|+.-.+..+. .||.|...+..
T Consensus 27 G~~nCKsCWf~~k~L---V~C~dHYLCl~CLtlmL~~Sd------rCpIC~~pLPt 73 (99)
T 2ko5_A 27 GPQFCKSCWFENKGL---VECNNHYLCLNCLTLLLSVSN------RCPICKMPLPT 73 (99)
T ss_dssp CCCCCCSSCSCCSSE---EECSSCEEEHHHHHHTCSSSS------EETTTTEECCC
T ss_pred CcccChhhccccCCe---eeecchhhHHHHHHHHHhhcc------CCcccCCcCCc
Confidence 346788887666642 245 49999999998877664 89999887754
No 123
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=73.29 E-value=0.94 Score=29.58 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=16.9
Q ss_pred CCCcccccccccccccccc
Q 019461 287 SVPQHCLGCDRAFCGAYWH 305 (340)
Q Consensus 287 ~~~~~C~~C~~~~C~~y~~ 305 (340)
.+.+||..|+.++|..+.-
T Consensus 16 ~l~lfC~~~~~~iC~~C~~ 34 (50)
T 2yvr_A 16 PLVLFCESCDTLTCRDCQL 34 (50)
T ss_dssp BCCEEETTTTEEECHHHHH
T ss_pred CEEEEeCCCCEEEecccCC
Confidence 4899999999999999875
No 124
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.35 E-value=1.6 Score=29.80 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=21.8
Q ss_pred CCccccccccccccccccCCccCCCCCccc
Q 019461 288 VPQHCLGCDRAFCGAYWHAQMVARSDSQPM 317 (340)
Q Consensus 288 ~~~~C~~C~~~~C~~y~~~~~~~~~~~~~~ 317 (340)
+.+||..++.++|.++.....+..|.+.++
T Consensus 24 L~lfC~~d~~~iC~~C~~s~eH~~H~~~~l 53 (59)
T 2yrg_A 24 LLLFCQEDGKVICWLCERSQEHRGHHTFPT 53 (59)
T ss_dssp CCEEETTTCSEECHHHHTSTTTTTCCEEEC
T ss_pred eeeecCCCCcEEecccCCCCcCCCCcEeeH
Confidence 788999999999999886554544444433
No 125
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=67.49 E-value=1.5 Score=32.20 Aligned_cols=6 Identities=17% Similarity=0.495 Sum_probs=2.8
Q ss_pred ccCCCC
Q 019461 264 HCNQTT 269 (340)
Q Consensus 264 ~C~~~~ 269 (340)
+||+|+
T Consensus 33 fCPeCg 38 (81)
T 2jrp_A 33 LCPDCR 38 (81)
T ss_dssp ECSSSC
T ss_pred cCcchh
Confidence 444444
No 126
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=66.13 E-value=4.9 Score=31.03 Aligned_cols=48 Identities=21% Similarity=0.556 Sum_probs=31.1
Q ss_pred CCCcccCCCCCcccCccccCCCCCCCCCCCccccccccccccccccCCccCCCCCcccc
Q 019461 260 INGFHCNQTTVHLQCQGCGGMMPSRNDSVPQHCLGCDRAFCGAYWHAQMVARSDSQPMC 318 (340)
Q Consensus 260 ~~~~~C~~~~~hl~C~~C~~~~p~r~~~~~~~C~~C~~~~C~~y~~~~~~~~~~~~~~~ 318 (340)
...|+||. |+ |..|.+. ..+.|..|-..||--....+-.-....+.+|
T Consensus 51 ~g~W~Cp~---c~-C~~C~k~-------~~~~C~~Cp~sfC~~c~~g~l~~~~~~~~~c 98 (107)
T 4gne_A 51 YGKWECPW---HQ-CDECSSA-------AVSFCEFCPHSFCKDHEKGALVPSALEGRLC 98 (107)
T ss_dssp SSCCCCGG---GB-CTTTCSB-------CCEECSSSSCEECTTTCTTSCEECTTTTCEE
T ss_pred CCCEECCC---CC-CCcCCCC-------CCcCcCCCCcchhhhccCCcceecCCCCcee
Confidence 35577874 45 7777766 5689999999999876644443333333344
No 127
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=65.06 E-value=1.6 Score=30.84 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=19.1
Q ss_pred CCccccccccccccccccCCccCCCCC
Q 019461 288 VPQHCLGCDRAFCGAYWHAQMVARSDS 314 (340)
Q Consensus 288 ~~~~C~~C~~~~C~~y~~~~~~~~~~~ 314 (340)
+.+||..|+.++|.++.- ..+..|.+
T Consensus 28 l~lfC~~d~~~iC~~C~~-~~H~~H~~ 53 (72)
T 2csv_A 28 MELFCQTDQTCICYLCMF-QEHKNHST 53 (72)
T ss_dssp CCEEESSSCCEECHHHHH-TTTSSSCE
T ss_pred eEEEeCCCCeEEccccCC-CCCCCCCE
Confidence 788999999999999874 33333433
No 128
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=63.55 E-value=0.88 Score=34.45 Aligned_cols=49 Identities=27% Similarity=0.539 Sum_probs=27.4
Q ss_pred CCCCCCCCCCC---CC-cccCCCCC----cccCccccCCCCCCCC--CCCccccccccc
Q 019461 250 ELPCPQCGTEI---NG-FHCNQTTV----HLQCQGCGGMMPSRND--SVPQHCLGCDRA 298 (340)
Q Consensus 250 ~~~C~~C~~~~---~~-~~C~~~~~----hl~C~~C~~~~p~r~~--~~~~~C~~C~~~ 298 (340)
...|+.|..+. .+ +.|..|.. ...|..|.+.+..-.+ ...+||..|...
T Consensus 32 ~~~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q~LevLkACGAvdYFC~~chgL 90 (101)
T 2jne_A 32 ELHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHGHGL 90 (101)
T ss_dssp CCBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCEEEEETTEEEEEETTTTEE
T ss_pred cccCccCCCcceecCCEEECccccchhhccccCcchhhHHHHHHHhcCcchhhccCCce
Confidence 35788887542 22 34777763 3346666665443222 355777766543
No 129
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=61.36 E-value=9 Score=28.48 Aligned_cols=50 Identities=22% Similarity=0.489 Sum_probs=33.9
Q ss_pred CCceecccccccc-----CccE-eCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 130 EHAKCCICLNIWH-----DVVT-VAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 130 e~l~C~IC~~~~~-----~Pv~-l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
..-.|.||.+..- ++.+ -..|+-..|+.|++--.+..+ ..||+|...+..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~-----q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGT-----QNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSC-----SSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccC-----ccccccCCcccc
Confidence 4468999998731 1211 125777889999986555543 689999887753
No 130
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.75 E-value=1.4 Score=29.80 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=18.5
Q ss_pred CCccccccccccccccccCCccCCC
Q 019461 288 VPQHCLGCDRAFCGAYWHAQMVARS 312 (340)
Q Consensus 288 ~~~~C~~C~~~~C~~y~~~~~~~~~ 312 (340)
+.+||..|+.++|.++.....+-.|
T Consensus 28 L~lfC~~d~~~iC~~C~~~~eH~~H 52 (57)
T 2egm_A 28 LKLFCEVDEEAICVVCRESRSHKQH 52 (57)
T ss_dssp CCEEETTTTEEECHHHHHSHHHHSS
T ss_pred eeEEcCCCCcEEecccCCCCCCCCC
Confidence 7889999999999888754333333
No 131
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=56.87 E-value=15 Score=24.13 Aligned_cols=42 Identities=26% Similarity=0.511 Sum_probs=20.8
Q ss_pred CCCCCCCCCCCCCcccCCCCCcccCccccCCCCCCCCCCCcccccccccc
Q 019461 250 ELPCPQCGTEINGFHCNQTTVHLQCQGCGGMMPSRNDSVPQHCLGCDRAF 299 (340)
Q Consensus 250 ~~~C~~C~~~~~~~~C~~~~~hl~C~~C~~~~p~r~~~~~~~C~~C~~~~ 299 (340)
.+.|.-|......-.-..| .|..|..|... ....|.+|...+
T Consensus 6 ~~~C~IC~~~~~~p~~l~C-gH~fC~~Ci~~-------~~~~CP~Cr~~~ 47 (56)
T 1bor_A 6 FLRCQQCQAEAKCPKLLPC-LHTLCSGCLEA-------SGMQCPICQAPW 47 (56)
T ss_dssp CSSCSSSCSSCBCCSCSTT-SCCSBTTTCSS-------SSSSCSSCCSSS
T ss_pred CCCceEeCCccCCeEEcCC-CCcccHHHHcc-------CCCCCCcCCcEe
Confidence 4457777554322222233 45556666544 234555555443
No 132
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=48.04 E-value=2.5 Score=25.67 Aligned_cols=18 Identities=17% Similarity=0.277 Sum_probs=14.8
Q ss_pred CCceeccccccccCccEe
Q 019461 130 EHAKCCICLNIWHDVVTV 147 (340)
Q Consensus 130 e~l~C~IC~~~~~~Pv~l 147 (340)
+-+.||+|+..|..+-.|
T Consensus 4 EGFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADEL 21 (34)
T ss_dssp EEEECTTTCCEESSHHHH
T ss_pred cccCCcHHHHHcCCHHHH
Confidence 568999999999887554
No 133
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.36 E-value=18 Score=25.97 Aligned_cols=41 Identities=27% Similarity=0.715 Sum_probs=22.7
Q ss_pred CCCCCCCCCCCCcccCCCCCcccCccccCCCCCCCCCCCcccccccccc
Q 019461 251 LPCPQCGTEINGFHCNQTTVHLQCQGCGGMMPSRNDSVPQHCLGCDRAF 299 (340)
Q Consensus 251 ~~C~~C~~~~~~~~C~~~~~hl~C~~C~~~~p~r~~~~~~~C~~C~~~~ 299 (340)
.+|..|.... .|+|.++ . |..|...- ....-..|..|...|
T Consensus 11 ~~c~~C~~~~-~w~C~~c---~-C~vC~~~~---~~~~ll~CD~C~~~y 51 (77)
T 2e6s_A 11 TECDLCGGDP-EKKCHSC---S-CRVCGGKH---EPNMQLLCDECNVAY 51 (77)
T ss_dssp CCCTTTCSCS-SSCCSSS---S-CSSSCCCC---CSTTEEECSSSCCEE
T ss_pred ccChhhcCCC-CeECCCC---C-CcCcCCcC---CCCCEEEcCCCCccc
Confidence 4688886543 5777765 2 66665431 112334666666655
No 134
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=42.37 E-value=14 Score=29.88 Aligned_cols=53 Identities=21% Similarity=0.481 Sum_probs=33.3
Q ss_pred ccCCceeccccccccCccEeCCCCCcccHhhHHHHHHhcc-----CCCCCcCCCCCCcc
Q 019461 128 DIEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQ-----EKRSTVLCPHCRAV 181 (340)
Q Consensus 128 ~~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~-----~~~~~~~CP~Cr~~ 181 (340)
+..+..|.+|.+-=. -+.--.|-.+||..||..-+.... ...+...||.|+..
T Consensus 60 Dg~~d~C~vC~~GG~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCCSS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCCCc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 445678999986321 111126888999999986553100 12356899999753
No 135
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=41.55 E-value=11 Score=26.35 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=24.6
Q ss_pred CCCCCCCCCCCCcccCCCCCcccCccccCCCC
Q 019461 251 LPCPQCGTEINGFHCNQTTVHLQCQGCGGMMP 282 (340)
Q Consensus 251 ~~C~~C~~~~~~~~C~~~~~hl~C~~C~~~~p 282 (340)
.-|-.|... +.++|..|..-|+|..|+..|=
T Consensus 9 pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 9 PWCCICNED-ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp SSCTTTCSC-CCEEETTTTSEEECSSHHHHHT
T ss_pred CeeEEeCCC-CeEEecCCCCceehHHHHHHHc
Confidence 358888554 6799999988899999987743
No 136
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=41.13 E-value=10 Score=28.74 Aligned_cols=15 Identities=40% Similarity=1.238 Sum_probs=12.6
Q ss_pred CcccHhhHHHHHHhc
Q 019461 152 HNFCNGCFSEWLRRS 166 (340)
Q Consensus 152 H~FC~~Cl~~~~~~~ 166 (340)
-.||+.||++|....
T Consensus 41 AGFCRNCLskWy~~a 55 (105)
T 2o35_A 41 AGFCRNCLSNWYREA 55 (105)
T ss_dssp HSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 369999999999764
No 137
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=41.03 E-value=10 Score=28.67 Aligned_cols=15 Identities=33% Similarity=1.207 Sum_probs=12.5
Q ss_pred CcccHhhHHHHHHhc
Q 019461 152 HNFCNGCFSEWLRRS 166 (340)
Q Consensus 152 H~FC~~Cl~~~~~~~ 166 (340)
-.||+.||++|....
T Consensus 40 AGFCRNCLskWy~~a 54 (104)
T 3fyb_A 40 ADFCRNCLAKWLMEA 54 (104)
T ss_dssp HSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 369999999999753
No 138
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=39.51 E-value=15 Score=27.39 Aligned_cols=13 Identities=31% Similarity=0.984 Sum_probs=7.7
Q ss_pred CCCcccccccccc
Q 019461 287 SVPQHCLGCDRAF 299 (340)
Q Consensus 287 ~~~~~C~~C~~~~ 299 (340)
..++.|..|+..|
T Consensus 92 ~~~~~C~~C~~~f 104 (124)
T 2dlq_A 92 EMPYKCSSCSQQF 104 (124)
T ss_dssp SCSEECSSSCCEE
T ss_pred CCCccCCCccchh
Confidence 3556666666655
No 139
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=39.31 E-value=8.1 Score=29.01 Aligned_cols=30 Identities=23% Similarity=0.162 Sum_probs=22.5
Q ss_pred cCCceEeccEecCC--CceeeccCCCeeccCC
Q 019461 71 SSNAILVDDTMVQN--EEVVDIKCGTEIIPGP 100 (340)
Q Consensus 71 StNgt~vng~~i~~--~~~~~l~~gd~I~lg~ 100 (340)
|++-.+|||+.+.. +....|++||+|.+.+
T Consensus 63 ~~~~v~VNg~~v~~~~~~~~~L~~gD~V~i~p 94 (99)
T 2l52_A 63 GSINILINGNNIRHLEGLETLLKDSDEIGILP 94 (99)
T ss_dssp SSCEEEETTSCGGGTTSTTSCCCTTEEEEEEC
T ss_pred cccEEEECCEEccccCCCCCCCCCCCEEEEEC
Confidence 44568899988854 3456899999998765
No 140
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=37.99 E-value=9.9 Score=28.71 Aligned_cols=30 Identities=20% Similarity=0.035 Sum_probs=22.7
Q ss_pred eccCCceEeccEecCCCceeeccCCCeeccCC
Q 019461 69 NKSSNAILVDDTMVQNEEVVDIKCGTEIIPGP 100 (340)
Q Consensus 69 D~StNgt~vng~~i~~~~~~~l~~gd~I~lg~ 100 (340)
|++.+...|||+.+.. ...|++||+|.+-.
T Consensus 55 dl~~~~V~Vng~~v~~--d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 55 DLSTNKIGIFSRPIKL--TDVLKEGDRIEIYR 84 (97)
T ss_dssp CTTTSEEEEEECSCCT--TCBCCTTCEEEECC
T ss_pred cccccEEEEcCEECCC--CccCCCCCEEEEEe
Confidence 4456778899988874 46799999997654
No 141
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=37.20 E-value=35 Score=23.86 Aligned_cols=16 Identities=19% Similarity=0.704 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCcccCCC
Q 019461 252 PCPQCGTEINGFHCNQT 268 (340)
Q Consensus 252 ~C~~C~~~~~~~~C~~~ 268 (340)
+|..|.... .|+|+.|
T Consensus 4 ~c~~c~~~~-~w~C~~C 19 (70)
T 3asl_A 4 SCKHCKDDV-NRLCRVC 19 (70)
T ss_dssp SCTTTTTCT-TSCCTTT
T ss_pred ccccccCCC-CeECCCC
Confidence 577776543 4667765
No 142
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=34.91 E-value=51 Score=23.53 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=17.1
Q ss_pred CCccccccccccccccccCCccCCCC
Q 019461 288 VPQHCLGCDRAFCGAYWHAQMVARSD 313 (340)
Q Consensus 288 ~~~~C~~C~~~~C~~y~~~~~~~~~~ 313 (340)
..+.| -|...||......+.+.+.-
T Consensus 38 ~~f~C-rCg~~FCs~HRy~e~H~C~f 62 (74)
T 1wfp_A 38 TGFKC-RCGSTFCGTHRYPESHECQF 62 (74)
T ss_dssp TCEEC-TTSCEECTTTCSTTTSCCCS
T ss_pred cceEe-ccCCEeccccCCCcCCCCcC
Confidence 45778 58888888877766665443
No 143
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=33.31 E-value=13 Score=29.74 Aligned_cols=45 Identities=20% Similarity=0.516 Sum_probs=35.2
Q ss_pred CCCCCCCCC-----CCcccCCCCCcccCccccCCCCCCCCCCCcccccccc
Q 019461 252 PCPQCGTEI-----NGFHCNQTTVHLQCQGCGGMMPSRNDSVPQHCLGCDR 297 (340)
Q Consensus 252 ~C~~C~~~~-----~~~~C~~~~~hl~C~~C~~~~p~r~~~~~~~C~~C~~ 297 (340)
.|..|..+. .+..|..|...+ |..|....+..+...-|.|.+|..
T Consensus 57 ~C~~C~~~~g~l~~~g~~C~~C~~~V-C~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 57 RCILCGEQLGMLGSASVVCEDCKKNV-CTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp BCSSSCCBCSTTSCCEEECTTTCCEE-ETTSEEECCCSSSSCCEEEHHHHH
T ss_pred cccccCCCcccccCCCCCCCCCCccc-ccccCCccCCCCCccceechhhHH
Confidence 699997643 356899998888 999999876655557799998875
No 144
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=32.89 E-value=18 Score=31.81 Aligned_cols=19 Identities=37% Similarity=1.015 Sum_probs=14.2
Q ss_pred CCCCCCCC----------CCCCcccCCCC
Q 019461 251 LPCPQCGT----------EINGFHCNQTT 269 (340)
Q Consensus 251 ~~C~~C~~----------~~~~~~C~~~~ 269 (340)
.||+.|+. ++++|+|+.|.
T Consensus 35 ~yCPnCG~~~l~~f~nN~PVaDF~C~~C~ 63 (257)
T 4esj_A 35 SYCPNCGNNPLNHFENNRPVADFYCNHCS 63 (257)
T ss_dssp CCCTTTCCSSCEEC----CCCEEECTTTC
T ss_pred CcCCCCCChhhhhccCCCcccccccCCcc
Confidence 37999974 56778888775
No 145
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=30.77 E-value=16 Score=28.22 Aligned_cols=26 Identities=12% Similarity=0.023 Sum_probs=20.9
Q ss_pred eEeccEecC--CCceeeccCCCeeccCC
Q 019461 75 ILVDDTMVQ--NEEVVDIKCGTEIIPGP 100 (340)
Q Consensus 75 t~vng~~i~--~~~~~~l~~gd~I~lg~ 100 (340)
.+|||..+. .+..+.|++||+|.+-+
T Consensus 70 VLVNg~d~e~l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 70 VLVNSCDAEVVGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp EEESSSBHHHHTSSCCCCCSSCEEEEEE
T ss_pred EEECCeeeeccCCcccCCCCcCEEEEeC
Confidence 688998876 46678999999998754
No 146
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=30.39 E-value=7.3 Score=28.37 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=10.6
Q ss_pred CCCccccccccccc
Q 019461 287 SVPQHCLGCDRAFC 300 (340)
Q Consensus 287 ~~~~~C~~C~~~~C 300 (340)
..++.|..|++.|=
T Consensus 54 ~k~~~C~~C~k~F~ 67 (85)
T 2lv2_A 54 AQVFPCKYCPATFY 67 (85)
T ss_dssp SSSEECTTSSCEES
T ss_pred CCccCCCCCCCEeC
Confidence 46788888888774
No 147
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=29.74 E-value=29 Score=24.53 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=20.4
Q ss_pred ceEeccEecCCCceeeccCCCeeccCCC
Q 019461 74 AILVDDTMVQNEEVVDIKCGTEIIPGPD 101 (340)
Q Consensus 74 gt~vng~~i~~~~~~~l~~gd~I~lg~~ 101 (340)
...|||+.+... ..|++||+|.+-+.
T Consensus 48 ~VavNg~~v~~~--~~L~dGD~V~i~pp 73 (77)
T 1rws_A 48 IAKVNGKVVLED--DEVKDGDFVEVIPV 73 (77)
T ss_dssp CEEETTEEECSS--SCCCSSCCCBCSCC
T ss_pred EEEECCEECCCC--CCcCCCCEEEEEcc
Confidence 467888888765 68999999988763
No 148
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=29.14 E-value=21 Score=24.98 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=18.2
Q ss_pred eEeccEecCCCceeeccCCCeeccCCC
Q 019461 75 ILVDDTMVQNEEVVDIKCGTEIIPGPD 101 (340)
Q Consensus 75 t~vng~~i~~~~~~~l~~gd~I~lg~~ 101 (340)
..|||+.+. +....|++||+|.+-+.
T Consensus 45 vavN~~~v~-~~~~~l~~gDeV~i~Pp 70 (74)
T 3rpf_C 45 IALNDHLID-NLNTPLKDGDVISLLPP 70 (74)
T ss_dssp EEESSSEEC-CTTCCCCTTCEEEEECC
T ss_pred EEECCEEcC-CCCcCCCCCCEEEEECC
Confidence 456666654 34568999999987663
No 149
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=28.99 E-value=21 Score=26.00 Aligned_cols=31 Identities=29% Similarity=0.820 Sum_probs=22.9
Q ss_pred CCCCCCCCC-CCCC--cccCCCCC---cccCccccCC
Q 019461 250 ELPCPQCGT-EING--FHCNQTTV---HLQCQGCGGM 280 (340)
Q Consensus 250 ~~~C~~C~~-~~~~--~~C~~~~~---hl~C~~C~~~ 280 (340)
.+.|+.|.. ++.+ |.|..|.. +-.|..|...
T Consensus 21 ~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~ 57 (82)
T 2fc7_A 21 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDC 57 (82)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTC
T ss_pred cCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhC
Confidence 457999975 5543 88999887 6558888754
No 150
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=28.85 E-value=24 Score=25.47 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=19.6
Q ss_pred ceEeccEecCCCceeeccCCCeeccCCC
Q 019461 74 AILVDDTMVQNEEVVDIKCGTEIIPGPD 101 (340)
Q Consensus 74 gt~vng~~i~~~~~~~l~~gd~I~lg~~ 101 (340)
-.+|||+.+.. ...|++||+|.+-+.
T Consensus 60 ~v~VN~~~v~~--~~~l~~gDeV~i~Pp 85 (89)
T 3po0_A 60 NVLRNGEAAAL--GEATAAGDELALFPP 85 (89)
T ss_dssp EEEETTEECCT--TSBCCTTCEEEEECC
T ss_pred EEEECCEECCC--CcccCCCCEEEEECC
Confidence 35778888775 457999999987663
No 151
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.46 E-value=23 Score=24.35 Aligned_cols=30 Identities=27% Similarity=0.637 Sum_probs=23.3
Q ss_pred CCCCCCCC-CCCC--cccCCCCCcccCccccCC
Q 019461 251 LPCPQCGT-EING--FHCNQTTVHLQCQGCGGM 280 (340)
Q Consensus 251 ~~C~~C~~-~~~~--~~C~~~~~hl~C~~C~~~ 280 (340)
+.|+.|.. ++.+ |.|..|..+-.|..|...
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~ 44 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWR 44 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHH
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhC
Confidence 57999975 4655 889999888779998554
No 152
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=28.27 E-value=24 Score=23.92 Aligned_cols=26 Identities=8% Similarity=0.074 Sum_probs=18.9
Q ss_pred eEeccEecCCC--ceeeccCCCeeccCC
Q 019461 75 ILVDDTMVQNE--EVVDIKCGTEIIPGP 100 (340)
Q Consensus 75 t~vng~~i~~~--~~~~l~~gd~I~lg~ 100 (340)
..|||..+.+. ....|++||+|.+-+
T Consensus 32 vavN~~~v~~~~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 32 VLLNEEAFLGLEVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp EEETTEEEEGGGCCCCCCCTTCEEEEEE
T ss_pred EEECCEECCccccCCcCCCCCCEEEEEe
Confidence 56777777654 346899999998654
No 153
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=27.29 E-value=16 Score=28.33 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=21.1
Q ss_pred eEeccEecC--CCceeeccCCCeeccCCC
Q 019461 75 ILVDDTMVQ--NEEVVDIKCGTEIIPGPD 101 (340)
Q Consensus 75 t~vng~~i~--~~~~~~l~~gd~I~lg~~ 101 (340)
.||||..+. .+....|++||+|.+-+.
T Consensus 76 VlVN~~di~~l~gldt~L~dGDeV~iip~ 104 (114)
T 1wgk_A 76 VLINDADWELLGELDYQLQDQDSILFIST 104 (114)
T ss_dssp EEESSSBHHHHCTTTCBCCSSEEEEEEEC
T ss_pred EEECCeeeeccCCcCcCCCCCCEEEEeCC
Confidence 688888765 356789999999987653
No 154
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=27.13 E-value=20 Score=27.00 Aligned_cols=31 Identities=29% Similarity=0.768 Sum_probs=24.1
Q ss_pred CCCCCCCCC-CCCC--cccCCCCCcccCccccCC
Q 019461 250 ELPCPQCGT-EING--FHCNQTTVHLQCQGCGGM 280 (340)
Q Consensus 250 ~~~C~~C~~-~~~~--~~C~~~~~hl~C~~C~~~ 280 (340)
.+.|+.|.. ++.+ |.|..|..+-.|..|...
T Consensus 31 gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~ 64 (98)
T 2dip_A 31 GIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDS 64 (98)
T ss_dssp CCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHT
T ss_pred CCCCcCCCCCCcccCeEECCCCCCccHHHHHHcc
Confidence 368999975 5654 899999888779988654
No 155
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=26.24 E-value=24 Score=25.70 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=19.2
Q ss_pred eEeccEecCC--CceeeccCCCeeccCC
Q 019461 75 ILVDDTMVQN--EEVVDIKCGTEIIPGP 100 (340)
Q Consensus 75 t~vng~~i~~--~~~~~l~~gd~I~lg~ 100 (340)
.+|||+.+.. +....|++||+|.+.+
T Consensus 61 v~VN~~~v~~~~~~~~~L~~gDeV~i~P 88 (93)
T 3dwg_C 61 IYVNDEDVRFSGGLATAIADGDSVTILP 88 (93)
T ss_dssp EEETTEEGGGTTGGGCBCCTTCEEEEEE
T ss_pred EEECCEEccCcCCCCcCCCCCCEEEEEC
Confidence 5678877763 3356899999998765
No 156
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=25.90 E-value=31 Score=25.59 Aligned_cols=26 Identities=23% Similarity=0.153 Sum_probs=20.2
Q ss_pred eEeccEecC--CCceeeccCCCeeccCC
Q 019461 75 ILVDDTMVQ--NEEVVDIKCGTEIIPGP 100 (340)
Q Consensus 75 t~vng~~i~--~~~~~~l~~gd~I~lg~ 100 (340)
.+|||..+. .+....|++||+|.+-+
T Consensus 67 v~VN~~~~~~~~~~d~~L~dgDeVa~~P 94 (99)
T 2qjl_A 67 TLINDTDWELEGEKDYILEDGDIISFTS 94 (99)
T ss_dssp EEETTEEGGGGTGGGCBCCTTCEEEEEE
T ss_pred EEECCEEccccCCCCcCcCCCCEEEEEC
Confidence 688998865 24567899999998755
No 157
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=25.74 E-value=34 Score=23.77 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=19.0
Q ss_pred ceEeccEecCCCceeeccCCCeeccCC
Q 019461 74 AILVDDTMVQNEEVVDIKCGTEIIPGP 100 (340)
Q Consensus 74 gt~vng~~i~~~~~~~l~~gd~I~lg~ 100 (340)
...|||+.+... ..|++||+|.+-+
T Consensus 48 ~v~vNg~~v~~~--~~L~~gD~V~i~p 72 (77)
T 2q5w_D 48 QVAVNEEFVQKS--DFIQPNDTVALIP 72 (77)
T ss_dssp EEEETTEEECTT--SEECTTCEEEEEC
T ss_pred EEEECCEECCCC--CCcCCCCEEEEEC
Confidence 467777777664 5899999998765
No 158
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=25.68 E-value=13 Score=20.26 Aligned_cols=17 Identities=24% Similarity=0.788 Sum_probs=12.5
Q ss_pred CCccccccccccccccc
Q 019461 288 VPQHCLGCDRAFCGAYW 304 (340)
Q Consensus 288 ~~~~C~~C~~~~C~~y~ 304 (340)
..+||++|++|.=--.|
T Consensus 4 vdffcetcskpwlvgww 20 (26)
T 1loi_A 4 VDFFCETCSKPWLVGWW 20 (26)
T ss_dssp HHHHHHTSSCTTGGGGH
T ss_pred HHHHHHhcCCchhhhhH
Confidence 45799999998755444
No 159
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.38 E-value=30 Score=23.35 Aligned_cols=20 Identities=20% Similarity=0.444 Sum_probs=14.1
Q ss_pred CCCCCCCCCCCcccCCCCCcc
Q 019461 252 PCPQCGTEINGFHCNQTTVHL 272 (340)
Q Consensus 252 ~C~~C~~~~~~~~C~~~~~hl 272 (340)
.|..|.. .+.|.||.|...-
T Consensus 14 ~C~vC~~-~~kY~CPrC~~~y 33 (56)
T 2yqq_A 14 VCVICLE-KPKYRCPACRVPY 33 (56)
T ss_dssp CCTTTCS-CCSEECTTTCCEE
T ss_pred ccCcCcC-CCeeeCCCCCCCe
Confidence 5777777 6677777776555
No 160
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=24.29 E-value=26 Score=25.16 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=19.4
Q ss_pred eEeccEecCC--CceeeccCCCeeccCC
Q 019461 75 ILVDDTMVQN--EEVVDIKCGTEIIPGP 100 (340)
Q Consensus 75 t~vng~~i~~--~~~~~l~~gd~I~lg~ 100 (340)
.+|||+.+.. +....|++||+|.+.+
T Consensus 58 v~vN~~~v~~~~~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 58 ILVNGNNITSMKGLDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEESSSBGGGTCSSSCBCCTTCEEEEEC
T ss_pred EEECCEEccccCCCCcCCCCCCEEEEeC
Confidence 6778877763 3466899999998765
No 161
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=24.25 E-value=42 Score=29.06 Aligned_cols=32 Identities=22% Similarity=0.512 Sum_probs=21.6
Q ss_pred CCceecccccccc---CccEeCCCCCcccHhhHHH
Q 019461 130 EHAKCCICLNIWH---DVVTVAPCLHNFCNGCFSE 161 (340)
Q Consensus 130 e~l~C~IC~~~~~---~Pv~l~pCgH~FC~~Cl~~ 161 (340)
+.-.|.+|...|. .--.--.||..||..|...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 4458999998764 1112226999999999653
No 162
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=23.96 E-value=28 Score=25.17 Aligned_cols=15 Identities=33% Similarity=1.010 Sum_probs=11.5
Q ss_pred CCCcccccccccccc
Q 019461 287 SVPQHCLGCDRAFCG 301 (340)
Q Consensus 287 ~~~~~C~~C~~~~C~ 301 (340)
..++.|..|+..|=.
T Consensus 71 ~~~~~C~~C~~~f~~ 85 (106)
T 2ee8_A 71 EKPFKCQECGKGFCQ 85 (106)
T ss_dssp CCTTSCSSSCCCCSS
T ss_pred CCCeECCCcCCcccC
Confidence 467899999887754
No 163
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=23.71 E-value=46 Score=23.76 Aligned_cols=40 Identities=30% Similarity=0.756 Sum_probs=21.7
Q ss_pred CCCCCCCCCCCcccCCCCCcccCccccCCCCCCCCCCCcccccccccc
Q 019461 252 PCPQCGTEINGFHCNQTTVHLQCQGCGGMMPSRNDSVPQHCLGCDRAF 299 (340)
Q Consensus 252 ~C~~C~~~~~~~~C~~~~~hl~C~~C~~~~p~r~~~~~~~C~~C~~~~ 299 (340)
+|..|.... .|+|+.| . |..|.+.- ....-..|..|...|
T Consensus 12 ~c~~c~~~~-~W~C~~C---~-C~vC~~~~---d~~~ll~CD~C~~~y 51 (77)
T 3shb_A 12 SCKHCKDDV-NRLCRVC---A-CHLCGGRQ---DPDKQLMCDECDMAF 51 (77)
T ss_dssp SCTTTTTCT-TSCCTTT---S-BTTTCCCS---CGGGEEECTTTCCEE
T ss_pred cccccCCCC-CCCCCCC---c-CCccCCCC---CCcceeEeCCCCCcc
Confidence 688886653 5777776 2 55554431 112334566665554
No 164
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=23.27 E-value=90 Score=22.84 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=17.3
Q ss_pred CccccccccccccccccCCccCCCC
Q 019461 289 PQHCLGCDRAFCGAYWHAQMVARSD 313 (340)
Q Consensus 289 ~~~C~~C~~~~C~~y~~~~~~~~~~ 313 (340)
++.|. |...||......+.+.+.-
T Consensus 40 ~f~Cr-Cg~~FC~~HRy~e~H~C~f 63 (85)
T 1wff_A 40 SFECR-CGNNFCASHRYAEAHGCNY 63 (85)
T ss_dssp CEECT-TCCEECTTTCSTGGGTCCS
T ss_pred CeEcC-CCCEecccCCCccCCCCcc
Confidence 77886 8888888877766665443
No 165
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=23.12 E-value=87 Score=21.07 Aligned_cols=22 Identities=27% Similarity=0.788 Sum_probs=12.0
Q ss_pred CCCCCCCCCCCcccCCCCCcccCcc
Q 019461 252 PCPQCGTEINGFHCNQTTVHLQCQG 276 (340)
Q Consensus 252 ~C~~C~~~~~~~~C~~~~~hl~C~~ 276 (340)
.|+.|..++.- ...-.|+.|..
T Consensus 8 ~CP~C~~~Iek---~~GCnhmtC~~ 29 (60)
T 1wd2_A 8 ECPKCHVTIEK---DGGCNHMVCRN 29 (60)
T ss_dssp CCTTTCCCCSS---CCSCCSSSCCS
T ss_pred ECcCCCCeeEe---CCCCCcEEECC
Confidence 58888766532 11225665554
No 166
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.78 E-value=40 Score=25.87 Aligned_cols=48 Identities=10% Similarity=0.018 Sum_probs=35.4
Q ss_pred CCceecccccccc---CccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCccccc
Q 019461 130 EHAKCCICLNIWH---DVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQF 184 (340)
Q Consensus 130 e~l~C~IC~~~~~---~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~~ 184 (340)
+-++|..|...|. ..... .=+..||..|..+.+... -.|-.|...+..
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~-~~g~~yC~~cy~~~f~~~------~~C~~C~~~I~~ 81 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIRLFGNS------GAGGSGGHMGSG 81 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEE-ETTEEECHHHHHHHHCCC------CSSSCSSCCSCC
T ss_pred hCCCcCCCCCcccccCCeEEE-ECCeeecHHHHHHHcCCC------CccccCCCCcCc
Confidence 4589999999886 23444 567789999998766432 169999887764
No 167
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=22.72 E-value=38 Score=23.71 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=18.9
Q ss_pred eEeccEecCCCceeeccCCCeeccCCC
Q 019461 75 ILVDDTMVQNEEVVDIKCGTEIIPGPD 101 (340)
Q Consensus 75 t~vng~~i~~~~~~~l~~gd~I~lg~~ 101 (340)
..|||+.+.. ...|++||+|.+-+.
T Consensus 53 v~vN~~~v~~--~~~l~~gD~V~i~Pp 77 (81)
T 1fm0_D 53 AAVNQTLVSF--DHPLTDGDEVAFFPP 77 (81)
T ss_dssp EEETTEECCT--TCBCCTTCEEEEECC
T ss_pred EEECCEECCC--CCCCCCCCEEEEeCC
Confidence 6778877764 458999999987653
No 168
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.51 E-value=1.3e+02 Score=20.82 Aligned_cols=21 Identities=24% Similarity=0.597 Sum_probs=11.8
Q ss_pred CccccccccccccccccCCccC
Q 019461 289 PQHCLGCDRAFCGAYWHAQMVA 310 (340)
Q Consensus 289 ~~~C~~C~~~~C~~y~~~~~~~ 310 (340)
.+.| -|...||..-...+.+.
T Consensus 29 ~f~C-rCg~~FC~~HR~~e~H~ 49 (64)
T 1wg2_A 29 GFKC-KCGSTFCGSHRYPEKHE 49 (64)
T ss_dssp CEEC-TTSCEECSSSCSSTTTT
T ss_pred CeEe-ecCCEecccCCCccccC
Confidence 4566 56666666555444443
No 169
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=22.50 E-value=31 Score=25.55 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=18.6
Q ss_pred eEeccEecCCCceeeccCCCeeccCC
Q 019461 75 ILVDDTMVQNEEVVDIKCGTEIIPGP 100 (340)
Q Consensus 75 t~vng~~i~~~~~~~l~~gd~I~lg~ 100 (340)
.+|||+.+.. ...|++||+|.+.+
T Consensus 70 v~VNg~~v~~--~~~L~dGDeV~i~p 93 (98)
T 1vjk_A 70 IAVNGRYVSW--DEELKDGDVVGVFP 93 (98)
T ss_dssp EEETTBCCCT--TCBCCTTCEEEEES
T ss_pred EEECCEECCC--CCCCCCCCEEEEEC
Confidence 6778877764 56899999998765
No 170
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=22.04 E-value=36 Score=24.64 Aligned_cols=13 Identities=31% Similarity=0.930 Sum_probs=6.4
Q ss_pred ccccccccccccc
Q 019461 290 QHCLGCDRAFCGA 302 (340)
Q Consensus 290 ~~C~~C~~~~C~~ 302 (340)
..|..|+..||-.
T Consensus 44 v~C~~C~~~FC~~ 56 (86)
T 2ct7_A 44 ATCPQCHQTFCVR 56 (86)
T ss_dssp EECTTTCCEECSS
T ss_pred eEeCCCCCccccc
Confidence 4455555555543
No 171
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=21.86 E-value=17 Score=28.53 Aligned_cols=15 Identities=27% Similarity=0.767 Sum_probs=9.4
Q ss_pred CCCcccccccccccc
Q 019461 287 SVPQHCLGCDRAFCG 301 (340)
Q Consensus 287 ~~~~~C~~C~~~~C~ 301 (340)
..++.|..|+..|=.
T Consensus 76 ~k~~~C~~C~k~F~~ 90 (133)
T 2lt7_A 76 ERRYQCLACGKSFIN 90 (133)
T ss_dssp CCCEEESSSCCEESS
T ss_pred CccccCCCCCCCcCC
Confidence 356677777766643
No 172
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=21.84 E-value=67 Score=22.35 Aligned_cols=45 Identities=18% Similarity=0.508 Sum_probs=24.3
Q ss_pred CCCCCCCCCCCCCCCCcccCCCCCcccCccccCC-------CCCCCC-CCCcccccccc
Q 019461 247 DSIELPCPQCGTEINGFHCNQTTVHLQCQGCGGM-------MPSRND-SVPQHCLGCDR 297 (340)
Q Consensus 247 ~~~~~~C~~C~~~~~~~~C~~~~~hl~C~~C~~~-------~p~r~~-~~~~~C~~C~~ 297 (340)
+....+|..|.....+ ..-+.|..|..- ++..+. ...|+|..|..
T Consensus 15 ~~~~~~C~~C~~~~~~------~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 15 GNQIWICPGCNKPDDG------SPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp SCEEECBTTTTBCCSS------CCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred CCCCcCCCCCCCCCCC------CCEEEcCCCCcccccccCCCCccCCCCCCEEChhccC
Confidence 3344578888765422 133445555433 222222 35799988864
No 173
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=21.43 E-value=21 Score=22.44 Aligned_cols=14 Identities=36% Similarity=0.736 Sum_probs=10.0
Q ss_pred CCCccccccccccc
Q 019461 287 SVPQHCLGCDRAFC 300 (340)
Q Consensus 287 ~~~~~C~~C~~~~C 300 (340)
..++.|..|+..|=
T Consensus 27 ~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 27 VRPYHCTYCNFSFK 40 (57)
T ss_dssp CCCEECSSSSCEES
T ss_pred CCCccCCCCCchhc
Confidence 45678888887764
No 174
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=21.20 E-value=39 Score=24.75 Aligned_cols=26 Identities=12% Similarity=0.037 Sum_probs=19.2
Q ss_pred eEeccEecCCCc--eeeccCCCeeccCC
Q 019461 75 ILVDDTMVQNEE--VVDIKCGTEIIPGP 100 (340)
Q Consensus 75 t~vng~~i~~~~--~~~l~~gd~I~lg~ 100 (340)
..|||+.+.+.+ ...|++||+|.+.+
T Consensus 55 VavNg~iV~~~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 55 VERNKEIIGKERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp EEETTEEECGGGTTTSBCCSSSEEEEEE
T ss_pred EEECCEECChhhcCCcCCCCCCEEEEEc
Confidence 567888877643 46799999997654
No 175
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=21.09 E-value=26 Score=28.50 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=14.7
Q ss_pred cCCceeccccccccCccEeCCCCCcccHhhHHHHHHhccCCCCCcCCCCCCcccc
Q 019461 129 IEHAKCCICLNIWHDVVTVAPCLHNFCNGCFSEWLRRSQEKRSTVLCPHCRAVVQ 183 (340)
Q Consensus 129 ~e~l~C~IC~~~~~~Pv~l~pCgH~FC~~Cl~~~~~~~~~~~~~~~CP~Cr~~~~ 183 (340)
+..+.|++|...|.....|. ..+... .....+.|+.|...+.
T Consensus 19 ~~~~~C~~C~~~f~~~~~l~------------~H~~~h-~~~~~~~C~~C~~~f~ 60 (190)
T 2i13_A 19 EKPYACPECGKSFSRSDHLA------------EHQRTH-TGEKPYKCPECGKSFS 60 (190)
T ss_dssp ------------CCSSHHHH------------HGGGCC----CCEECTTTCCEES
T ss_pred CCCCcCCCCccccCCHHHHH------------HHHHHc-CCCCCccCCCcCchhC
Confidence 35688999999887765441 111110 0123578999977654
No 176
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=20.77 E-value=20 Score=24.35 Aligned_cols=13 Identities=38% Similarity=0.979 Sum_probs=9.3
Q ss_pred CCCcccccccccc
Q 019461 287 SVPQHCLGCDRAF 299 (340)
Q Consensus 287 ~~~~~C~~C~~~~ 299 (340)
..++.|..|+..|
T Consensus 55 ~~~~~C~~C~~~f 67 (82)
T 2kmk_A 55 EKPHKCQVCGKAF 67 (82)
T ss_dssp CCCEECTTTSCEE
T ss_pred CCCCcCCCcchhh
Confidence 4567888877766
No 177
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=20.64 E-value=23 Score=22.25 Aligned_cols=13 Identities=31% Similarity=0.539 Sum_probs=8.9
Q ss_pred CCCcccccccccc
Q 019461 287 SVPQHCLGCDRAF 299 (340)
Q Consensus 287 ~~~~~C~~C~~~~ 299 (340)
..++.|..|+..|
T Consensus 30 ~~~~~C~~C~~~f 42 (57)
T 3uk3_C 30 EKPYKCEFCEYAA 42 (57)
T ss_dssp CCCEECSSSSCEE
T ss_pred CCCcCCCCCcchh
Confidence 3567777777765
No 178
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=20.63 E-value=50 Score=23.63 Aligned_cols=26 Identities=23% Similarity=0.150 Sum_probs=19.4
Q ss_pred CceEeccEecCCCceeeccCCCeeccCC
Q 019461 73 NAILVDDTMVQNEEVVDIKCGTEIIPGP 100 (340)
Q Consensus 73 Ngt~vng~~i~~~~~~~l~~gd~I~lg~ 100 (340)
=|..|||+.+... ..|++||.|.+-.
T Consensus 42 v~AkVNG~~v~L~--~~L~~gd~VeIit 67 (78)
T 3hvz_A 42 IGAKVDGRIVPID--YKVKTGEIIDVLT 67 (78)
T ss_dssp EEEEETTEEECTT--CBCCTTCBEEEEE
T ss_pred EEEEECCEEcCCC--cccCCCCEEEEEc
Confidence 3457788888875 5789999887654
No 179
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=20.48 E-value=1.4e+02 Score=20.56 Aligned_cols=22 Identities=23% Similarity=0.563 Sum_probs=12.8
Q ss_pred CccccccccccccccccCCccCC
Q 019461 289 PQHCLGCDRAFCGAYWHAQMVAR 311 (340)
Q Consensus 289 ~~~C~~C~~~~C~~y~~~~~~~~ 311 (340)
.+.| -|...||..-...+.+.+
T Consensus 29 ~f~C-rCg~~FC~~HRy~e~H~C 50 (64)
T 1wfh_A 29 GFMC-RCGTTFCGSHRYPEVHGC 50 (64)
T ss_dssp CEEC-SSSCEECTTTCSTTTTTC
T ss_pred CEEe-ecCCEeccccCCcccCCC
Confidence 4666 477777766555544433
No 180
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=20.29 E-value=60 Score=22.31 Aligned_cols=24 Identities=25% Similarity=0.185 Sum_probs=18.5
Q ss_pred eEeccEecCCCceeeccCCCeeccCC
Q 019461 75 ILVDDTMVQNEEVVDIKCGTEIIPGP 100 (340)
Q Consensus 75 t~vng~~i~~~~~~~l~~gd~I~lg~ 100 (340)
..+||..+.+.. .|++||+|.+-+
T Consensus 42 vavN~~~v~~~~--~L~~gD~V~ii~ 65 (70)
T 1ryj_A 42 VKKNGQIVIDEE--EIFDGDIIEVIR 65 (70)
T ss_dssp EEETTEECCTTS--BCCTTCEEEEEE
T ss_pred EEECCEECCCcc--cCCCCCEEEEEe
Confidence 567888877764 899999997654
Done!