BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019462
         (340 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2GVI|A Chain A, Crystal Structure Of A Putative Formylmethanofuran
           Dehydrogenase Subunit E (Ta1109) From Thermoplasma
           Acidophilum At 1.87 A Resolution
          Length = 204

 Score = 32.3 bits (72), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 6/47 (12%)

Query: 259 LDGGTTLPTSSEGFKITV------AYSGDVILLNGVPVVFPDMYSSN 299
           +DG T  P    G K+         Y  D  LLNG PV  PD Y   
Sbjct: 158 IDGFTFEPVKKNGAKVRCDVCGEYTYEADAKLLNGKPVCKPDYYGKK 204


>pdb|1X3B|A Chain A, Solution Structure Of The Fas1 Domain Of Human
           Transforming Growth Factor-Beta Induced Protein Ig-H3
          Length = 146

 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 19/106 (17%)

Query: 219 TIFAPVDAA---MEPYVK-----NITDCVSIFKQHVVLRLL---RWQDLIRLDGGTTLPT 267
           T+FAP + A   + P  +     +  +  +I K H+   +L       L+RL        
Sbjct: 44  TVFAPTNEAFRALPPRERSRLLGDAKELANILKYHIGDEILVSGGIGALVRLK------- 96

Query: 268 SSEGFKITVAYSGDVILLNGVPVVFPDMYSSNWLVVHGLDSLLAVS 313
           S +G K+ V+   +V+ +N  PV  PD+ ++N  VVH + ++L  S
Sbjct: 97  SLQGDKLEVSLKNNVVSVNKEPVAEPDIMATNG-VVHVITNVLQPS 141


>pdb|2VXP|A Chain A, The Fourth Fas1 Domain Structure Of Human Bigh3
 pdb|2VXP|B Chain B, The Fourth Fas1 Domain Structure Of Human Bigh3
          Length = 132

 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 19/103 (18%)

Query: 219 TIFAPVDAA---MEPYVK-----NITDCVSIFKQHVVLRLLRWQDLIRLDGGT---TLPT 267
           T+FAP + A   + P  +     +  +  +I K H+        D I + GG        
Sbjct: 37  TVFAPTNEAFRALPPRERSRLLGDAKELANILKYHI-------GDEILVSGGIGALVRLK 89

Query: 268 SSEGFKITVAYSGDVILLNGVPVVFPDMYSSNWLVVHGLDSLL 310
           S +G K+ V+   +V+ +N  PV  PD+ ++N  VVH + ++L
Sbjct: 90  SLQGDKLEVSLKNNVVSVNKEPVAEPDIMATNG-VVHVITNVL 131


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,902,276
Number of Sequences: 62578
Number of extensions: 282795
Number of successful extensions: 472
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 472
Number of HSP's gapped (non-prelim): 3
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)