Query 019462
Match_columns 340
No_of_seqs 213 out of 1185
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 16:27:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019462.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019462hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o70_A Fasciclin I, FAS I, FCN 100.0 5.2E-38 1.8E-42 301.2 -1.0 229 56-321 45-317 (324)
2 1w7d_A Fasciclin-like protein; 99.9 6.9E-25 2.4E-29 185.3 5.9 121 188-315 4-137 (137)
3 2vxp_A Transforming growth fac 99.9 7.7E-24 2.6E-28 177.8 6.5 118 188-310 3-131 (132)
4 1nyo_A Immunogenic protein MPT 99.9 2.5E-23 8.5E-28 181.0 5.7 120 186-314 27-162 (163)
5 1w7d_A Fasciclin-like protein; 99.7 4.7E-20 1.6E-24 155.6 -1.8 117 28-154 4-136 (137)
6 1o70_A Fasciclin I, FAS I, FCN 99.7 4.7E-18 1.6E-22 162.5 4.2 119 195-315 21-158 (324)
7 1nyo_A Immunogenic protein MPT 99.7 6.5E-19 2.2E-23 153.0 -2.8 116 27-154 28-162 (163)
8 2vxp_A Transforming growth fac 99.7 4.8E-19 1.6E-23 148.5 -4.1 116 28-152 3-132 (132)
9 3bpd_A Uncharacterized protein 14.5 61 0.0021 25.0 1.3 29 282-310 52-83 (100)
10 2raq_A Conserved protein MTH88 10.2 68 0.0023 24.6 0.3 29 282-310 52-83 (97)
No 1
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1
Probab=100.00 E-value=5.2e-38 Score=301.23 Aligned_cols=229 Identities=20% Similarity=0.290 Sum_probs=165.3
Q ss_pred ceeEEeecCCCccccccccc-------cc-cceeeecCCCccCccccchhhcc-C-CccccccCceEEEEEccC-Cccee
Q 019462 56 SKTLTIFSPSDFSFSQSGQL-------SL-SQLQYHISPSRLSQDSLKTLAFG-S-RLPTLLSNHSLIVTVSDF-NNAHL 124 (340)
Q Consensus 56 ~~~~TVFAPtd~AF~~~~~~-------~l-~lL~yHvvp~~~~~~~L~~l~~g-~-~l~Tl~~g~~l~vt~~~~-~~~~v 124 (340)
.+++|||||+|+||.+.... .+ ++|+||+++++++.++|.....+ . .++|+..+..++++..+. +++.+
T Consensus 45 ~~~~TvFAPtn~Af~~~~~~~l~~~~~~l~~iL~yHvv~g~~~~~~l~~~~~~~~~~~~Tl~g~~~l~~~v~~~~~~~~v 124 (324)
T 1o70_A 45 LTEVTILAPSNEAWNSSNINNVLRDRNKMRQILNMHIIKDRLNVDKIRQKNANLIAQVPTVNNNTFLYFNVRGEGSDTVI 124 (324)
T ss_dssp CSSEEEEEECHHHHHHTCTHHHHTCHHHHHHHHHHTEESSCCCHHHHHHHTSSSCCCEEBSSTTCEEEEEEESCGGGCEE
T ss_pred CCCeEEEEEChHhhhcccHhhhhCCHHHHHHHHHhcEeCCeecHHHHhhccCCCceEEEcCCCCceEEEEEeecCCceEE
Confidence 47999999999999875321 12 89999999999999998864321 1 577875433467765531 13468
Q ss_pred eeee----eEeecCCCC-CccceEEeeehhhccccceeeecCCCCCCCCCCCCCCCCccccccccccccchhcccc-cCc
Q 019462 125 SING----VLIQESPMF-DQEELVVYGIDEFFNSSFGVMISPPPHSAPVPSPVPSPIEPIGFDVDVFGEASDLLNS-RGY 198 (340)
Q Consensus 125 ~vn~----a~I~~~di~-~ng~~vVH~Id~VL~P~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~L~~-~g~ 198 (340)
++++ ++|+.+|+. .|| +||+||+||.|+.. ++.+.++. ..|
T Consensus 125 ~v~~g~~~a~v~~~di~~~NG--vIhvID~VL~pp~~-------------------------------ti~~~l~~~~~f 171 (324)
T 1o70_A 125 TVEGGGVNATVIQADVAQTNG--YVHIIDHVLGVPYT-------------------------------TVLGKLESDPMM 171 (324)
T ss_dssp EEEETTEEEEEEEEEEECSSE--EEEEESSCTTSCCS-------------------------------CHHHHHHHCGGG
T ss_pred EEcCCceeEEEEeccccccCc--EEEEEchhhhhchh-------------------------------hHHHHhhcCchH
Confidence 8885 899999984 777 99999999999721 23445554 458
Q ss_pred hhhhHHHhh-Hhhh-hc-cceeEEEeeeccccccccc----c--------cc-hhHHHHhhhhhHhh--hhcccceeecc
Q 019462 199 TLMATFLDM-QLAR-FT-NQTRLTIFAPVDAAMEPYV----K--------NI-TDCVSIFKQHVVLR--LLRWQDLIRLD 260 (340)
Q Consensus 199 ~~~~~~L~~-~l~~-l~-~~~~~TvFAPtD~Af~~~~----~--------~~-~~l~~iL~yHvVp~--~~~~~dL~~~~ 260 (340)
++|..+++. .+.+ +. ..++||||||+|+||+++. . +. +.++++|+|||||+ .++.++|.+..
T Consensus 172 s~~~~~l~~~gl~~~L~~~~~~~TvFAPtd~Af~~l~~~~~~~~~~~l~~~~~~~l~~iL~yHvv~~~~~~~~~~l~~~~ 251 (324)
T 1o70_A 172 SDTYKMGKFSHFNDQLNNTQRRFTYFVPRDKGWQKTELDYPSAHKKLFMADFSYHSKSILERHLAISDKEYTMKDLVKFS 251 (324)
T ss_dssp HHHHHHTTTTTTTGGGGCSSSEEEEEEECHHHHHHHHHHCHHHHHHHTSGGGHHHHHHHHHTTEEEESSCCCHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHhCCCCCCeEEEEeChHHHHhhhhhchhHHHHHhccCcHHHHHHHHHhcEeCCcceEcHHHHhhhc
Confidence 888887754 3433 43 3579999999999999973 1 11 36889999999998 67778886432
Q ss_pred C--C-ccccCCCCCeEEEEEE--eccEEEEC----CceeecccccccceEEeeecccccccCCCcccccc
Q 019462 261 G--G-TTLPTSSEGFKITVAY--SGDVILLN----GVPVVFPDMYSSNWLVVHGLDSLLAVSPLDEKIIG 321 (340)
Q Consensus 261 ~--g-~~l~Tl~~g~~L~v~~--~~~~i~vn----~a~V~~~di~~~~~gvIH~Id~VL~~p~~~~~~~~ 321 (340)
. + ..++|+. ..+.|+. .++.++|| +++|+.+|+.+ .|||||+||+|| +|+......|
T Consensus 252 ~~~~~~~~~Tl~--~~l~v~~~~~~~~v~v~~~~~~a~v~~~di~~-~NGvIHvID~VL-~P~~~~~~~g 317 (324)
T 1o70_A 252 QESGSVILPTFR--DSLSIRVEEEAGRYVIIWNYKKINVYRPDVEC-TNGIIHVIDYPL-LEEKDVVVAG 317 (324)
T ss_dssp HHSSSEEEECSS--SEEEEEEEEETTEEEEEETTEEEEEEEEEEEE-TTEEEEEESSCS-CCTTTTC---
T ss_pred cCCCeeeeeccC--CcEEEEEEecCCEEEEEecCceeEEEEccccc-CCCeEEEeceee-cCCcccccCC
Confidence 1 1 1378885 5677765 46788887 78999999875 668999999999 9987654333
No 2
>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A
Probab=99.90 E-value=6.9e-25 Score=185.34 Aligned_cols=121 Identities=28% Similarity=0.368 Sum_probs=99.5
Q ss_pred cchhcccc-cCchhhhHHHhh-Hhhh-hccceeEEEeeecccccccccc----------cchhHHHHhhhhhHhhhhccc
Q 019462 188 EASDLLNS-RGYTLMATFLDM-QLAR-FTNQTRLTIFAPVDAAMEPYVK----------NITDCVSIFKQHVVLRLLRWQ 254 (340)
Q Consensus 188 ~~~~~L~~-~g~~~~~~~L~~-~l~~-l~~~~~~TvFAPtD~Af~~~~~----------~~~~l~~iL~yHvVp~~~~~~ 254 (340)
++.+.|+. .+|++|..+++. .+.+ +.+.+++|||||+|+||++++. +.+.++++|+|||||+++..+
T Consensus 4 ~i~~~l~~~~~~s~f~~~l~~agl~~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~~~l~~lL~yHvv~~~~~~~ 83 (137)
T 1w7d_A 4 DIVETATGAGSFTTLLTAAEAAGLVDTLKGDGPFTVFAPTDAAFAALPEGTVEDLLKPENKEKLTEILTYHVVPGEVMSS 83 (137)
T ss_dssp TTGGGGGSCSSSTTTTHHHHHTTTHHHHTSSSCEEEECCCHHHHTTSTTTHHHHTTSHHHHHHHHHHHHHHEEESCCCTT
T ss_pred CHHHHHHhCCCHHHHHHHHHHcCCHHHHcCCCCEEEEEECHHHHHHcCHhHHHHHhCcCCHHHHHHHHHhhEeCcEEcHH
Confidence 56777764 569999998865 3433 5566799999999999999854 345578999999999999888
Q ss_pred ceeeccCCccccCCCCCeEEEEEEeccEEEECCceeecccccccceEEeeecccccccCCC
Q 019462 255 DLIRLDGGTTLPTSSEGFKITVAYSGDVILLNGVPVVFPDMYSSNWLVVHGLDSLLAVSPL 315 (340)
Q Consensus 255 dL~~~~~g~~l~Tl~~g~~L~v~~~~~~i~vn~a~V~~~di~~~~~gvIH~Id~VL~~p~~ 315 (340)
+|. .|..++|+ .|..|.|+..+| ++|||++|+.+|+.+ +|||||+||+|| +|+.
T Consensus 84 ~l~---~~~~~~tl-~G~~l~v~~~~g-v~vn~a~v~~~di~~-~NGvIHvID~VL-~P~s 137 (137)
T 1w7d_A 84 DLT---EGMTAETV-EGGALTVTLEGG-PKVNGVSISQPDVDA-SNGVIHVIDGVL-MPGA 137 (137)
T ss_dssp TSC---SSEEEECT-TSCEEEEECTTS-CEETTEECSBCCCBC-SSSEEEBCSSCC-SSCC
T ss_pred Hhc---CCCeeecc-CCceEEEEecCC-EEEeCcEEEECCeec-CCeEEEEECeee-CCCC
Confidence 875 36678888 588999999888 999999999999875 678999999999 8873
No 3
>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A
Probab=99.89 E-value=7.7e-24 Score=177.81 Aligned_cols=118 Identities=22% Similarity=0.351 Sum_probs=96.9
Q ss_pred cchhcccc-cCchhhhHHHhh-Hhh-hhccceeEEEeeecccccccccc--------cchhHHHHhhhhhHhhhhcccce
Q 019462 188 EASDLLNS-RGYTLMATFLDM-QLA-RFTNQTRLTIFAPVDAAMEPYVK--------NITDCVSIFKQHVVLRLLRWQDL 256 (340)
Q Consensus 188 ~~~~~L~~-~g~~~~~~~L~~-~l~-~l~~~~~~TvFAPtD~Af~~~~~--------~~~~l~~iL~yHvVp~~~~~~dL 256 (340)
++++.|+. .+|++|..+++. .+. .+.+.++||||||+|+||++++. +.+.++++|+|||+|+.+..+++
T Consensus 3 ti~~~l~~~~~fs~~~~~l~~agl~~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~l~~iL~yHvv~~~~~~~~l 82 (132)
T 2vxp_A 3 TVMDVLKGDNRFSMLVAAIQSAGLTETLNREGVYTVFAPTNEAFRALPPRERSRLLGDAKELANILKYHIGDEILVSGGI 82 (132)
T ss_dssp CHHHHHTTSTTCHHHHHHHHHHTCHHHHHSSCCEEEEEECHHHHHHSCHHHHHHHHTCHHHHHHHHHHSBBSSCCCSTTC
T ss_pred cHHHHHHcCCCHHHHHHHHHHcCcHHHHcCCCCEEEEeECHHHHHhhCHHHHHHHhcCHHHHHHHHHhcCcCceeehhhc
Confidence 46677775 569999999865 343 35567899999999999999864 34568899999999998877776
Q ss_pred eeccCCccccCCCCCeEEEEEEeccEEEECCceeecccccccceEEeeeccccc
Q 019462 257 IRLDGGTTLPTSSEGFKITVAYSGDVILLNGVPVVFPDMYSSNWLVVHGLDSLL 310 (340)
Q Consensus 257 ~~~~~g~~l~Tl~~g~~L~v~~~~~~i~vn~a~V~~~di~~~~~gvIH~Id~VL 310 (340)
. .+..++|+ .|..|.|+..++.++||+++|+.+|+.+ +|||||+||+||
T Consensus 83 ~---~~~~~~tl-~G~~l~v~~~~~~v~vn~a~v~~~di~a-~NGvIHvID~VL 131 (132)
T 2vxp_A 83 G---ALVRLKSL-QGDKLEVSLKNNVVSVNKEPVAEPDIMA-TNGVVHVITNVL 131 (132)
T ss_dssp S---SCEEEEBT-TSSEEEEEEETTEEEESSCBEEEEEEEE-TTEEEEEESSCC
T ss_pred c---CCceEecC-CCCEEEEEEeCCEEEEeccEEEEcceec-CCEEEEEECcEe
Confidence 4 35678888 5889999999999999999999999875 679999999998
No 4
>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1
Probab=99.88 E-value=2.5e-23 Score=180.99 Aligned_cols=120 Identities=24% Similarity=0.283 Sum_probs=100.1
Q ss_pred cccchhcccc-cCchhhhHHHh-----h-Hh-hhhccceeEEEeeecccccccccc--------cchhHHHHhhhhhHhh
Q 019462 186 FGEASDLLNS-RGYTLMATFLD-----M-QL-ARFTNQTRLTIFAPVDAAMEPYVK--------NITDCVSIFKQHVVLR 249 (340)
Q Consensus 186 ~~~~~~~L~~-~g~~~~~~~L~-----~-~l-~~l~~~~~~TvFAPtD~Af~~~~~--------~~~~l~~iL~yHvVp~ 249 (340)
..++.+.|++ .+|++|..+|+ . .+ ..|...+ +|||||+|+||++++. +.+.++++|+||||++
T Consensus 27 ~~~i~~~l~~~~~~s~f~~~l~~~~~~~agl~~~L~~~g-~TvFAPtn~AF~~l~~~~~~~L~~~~~~L~~iL~yHvv~g 105 (163)
T 1nyo_A 27 QDPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLNSGQ-YTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVVAG 105 (163)
T ss_dssp HSCHHHHHTTSTTTHHHHHHHHSSSCTTCCCHHHHTSSS-EEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHHHTEEES
T ss_pred CcCHHHHHHhCCCHHHHHHHHHhccccccCHHHHhCCCC-cEEEEECHHHHHhccHHHHHHHhcCHHHHHHHHHhceECC
Confidence 4577888875 45999999998 5 23 3355566 9999999999999864 2356889999999999
Q ss_pred hhcccceeeccCCccccCCCCCeEEEEEEeccEEEECCceeecccccccceEEeeecccccccCC
Q 019462 250 LLRWQDLIRLDGGTTLPTSSEGFKITVAYSGDVILLNGVPVVFPDMYSSNWLVVHGLDSLLAVSP 314 (340)
Q Consensus 250 ~~~~~dL~~~~~g~~l~Tl~~g~~L~v~~~~~~i~vn~a~V~~~di~~~~~gvIH~Id~VL~~p~ 314 (340)
++..++|. | .++|+ .|..|+|+..++.++||+++|+.+|+.+ .|||||+||+|| +|+
T Consensus 106 ~~~~~~l~----g-~~~Tl-~G~~l~v~~~~~~v~vn~a~V~~~di~a-~NGvIHvID~VL-~P~ 162 (163)
T 1nyo_A 106 QTSPANVV----G-TRQTL-QGASVTVTGQGNSLKVGNADVVCGGVST-ANATVYMIDSVL-MPP 162 (163)
T ss_dssp CCCTTTSC----E-EEECT-TSSEEEEEECSSCEEETTEECSSBCCCC-SSEEEBCBSSCC-CCC
T ss_pred EEcHHHhC----C-ccccC-CCCEEEEEEECCEEEEeccEEEECceEc-CCEEEEEECcEe-CCC
Confidence 99998885 3 58888 5889999999889999999999999875 679999999999 886
No 5
>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A
Probab=99.75 E-value=4.7e-20 Score=155.58 Aligned_cols=117 Identities=24% Similarity=0.371 Sum_probs=87.8
Q ss_pred hhhhhccccc-ceeeEEEEEEEeeeeec-cceeEEeecCCCccccccccc---------c---c-cceeeecCCCccCcc
Q 019462 28 NAVETLSNSG-YLSMALTLQITFKTLNL-ESKTLTIFSPSDFSFSQSGQL---------S---L-SQLQYHISPSRLSQD 92 (340)
Q Consensus 28 n~~~~L~~~g-~~~~a~~l~~~~~~~~l-~~~~~TVFAPtd~AF~~~~~~---------~---l-~lL~yHvvp~~~~~~ 92 (340)
++.++|++.+ |..++.+++.++....+ ..+++|||||+|+||.+++.. + + ++|+||+++++++.+
T Consensus 4 ~i~~~l~~~~~~s~f~~~l~~agl~~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~~~l~~lL~yHvv~~~~~~~ 83 (137)
T 1w7d_A 4 DIVETATGAGSFTTLLTAAEAAGLVDTLKGDGPFTVFAPTDAAFAALPEGTVEDLLKPENKEKLTEILTYHVVPGEVMSS 83 (137)
T ss_dssp TTGGGGGSCSSSTTTTHHHHHTTTHHHHTSSSCEEEECCCHHHHTTSTTTHHHHTTSHHHHHHHHHHHHHHEEESCCCTT
T ss_pred CHHHHHHhCCCHHHHHHHHHHcCCHHHHcCCCCEEEEEECHHHHHHcCHhHHHHHhCcCCHHHHHHHHHhhEeCcEEcHH
Confidence 4456676544 44444444433222223 347999999999999987521 1 2 799999999999999
Q ss_pred ccchhhccCCccccccCceEEEEEccCCcceeeeeeeEeecCCCC-CccceEEeeehhhcccc
Q 019462 93 SLKTLAFGSRLPTLLSNHSLIVTVSDFNNAHLSINGVLIQESPMF-DQEELVVYGIDEFFNSS 154 (340)
Q Consensus 93 ~L~~l~~g~~l~Tl~~g~~l~vt~~~~~~~~v~vn~a~I~~~di~-~ng~~vVH~Id~VL~P~ 154 (340)
+|.. |..+.|+ .|+.++|+..+ + +++|+++|+.+|+. .|| +||+||+||.|+
T Consensus 84 ~l~~---~~~~~tl-~G~~l~v~~~~---g-v~vn~a~v~~~di~~~NG--vIHvID~VL~P~ 136 (137)
T 1w7d_A 84 DLTE---GMTAETV-EGGALTVTLEG---G-PKVNGVSISQPDVDASNG--VIHVIDGVLMPG 136 (137)
T ss_dssp TSCS---SEEEECT-TSCEEEEECTT---S-CEETTEECSBCCCBCSSS--EEEBCSSCCSSC
T ss_pred HhcC---CCeeecc-CCceEEEEecC---C-EEEeCcEEEECCeecCCe--EEEEECeeeCCC
Confidence 9874 5567776 78999998764 5 99999999999995 777 999999999997
No 6
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1
Probab=99.70 E-value=4.7e-18 Score=162.50 Aligned_cols=119 Identities=18% Similarity=0.241 Sum_probs=89.7
Q ss_pred ccCchhhhHHHhhH---hhh-hccceeEEEeeeccccccccc-----ccchhHHHHhhhhhHhhhhcccceeeccC-C-c
Q 019462 195 SRGYTLMATFLDMQ---LAR-FTNQTRLTIFAPVDAAMEPYV-----KNITDCVSIFKQHVVLRLLRWQDLIRLDG-G-T 263 (340)
Q Consensus 195 ~~g~~~~~~~L~~~---l~~-l~~~~~~TvFAPtD~Af~~~~-----~~~~~l~~iL~yHvVp~~~~~~dL~~~~~-g-~ 263 (340)
...|++|..+|+.. +.+ +.+.++||||||+|+||+++. .+.+.++++|+|||+++++..++|..... | .
T Consensus 21 ~~~~s~~~~~l~~ag~~l~~~L~~~~~~TvFAPtn~Af~~~~~~~l~~~~~~l~~iL~yHvv~g~~~~~~l~~~~~~~~~ 100 (324)
T 1o70_A 21 NGALRKFYEVIMDNGGAVLDDINSLTEVTILAPSNEAWNSSNINNVLRDRNKMRQILNMHIIKDRLNVDKIRQKNANLIA 100 (324)
T ss_dssp HHHHHHHHHHHHHTCSHHHHHHHTCSSEEEEEECHHHHHHTCTHHHHTCHHHHHHHHHHTEESSCCCHHHHHHHTSSSCC
T ss_pred CCcHHHHHHHHHHHhHHHHHHHcCCCCeEEEEEChHhhhcccHhhhhCCHHHHHHHHHhcEeCCeecHHHHhhccCCCce
Confidence 34599999888543 533 556789999999999998753 24466889999999999998888865432 1 1
Q ss_pred cccCCCCCeEEEEEEec----cEEEECC----ceeecccccccceEEeeecccccccCCC
Q 019462 264 TLPTSSEGFKITVAYSG----DVILLNG----VPVVFPDMYSSNWLVVHGLDSLLAVSPL 315 (340)
Q Consensus 264 ~l~Tl~~g~~L~v~~~~----~~i~vn~----a~V~~~di~~~~~gvIH~Id~VL~~p~~ 315 (340)
.++|+.++..+.++..+ +.+.+|| ++|+.+|+.+ +|||||+||+|| .||.
T Consensus 101 ~~~Tl~g~~~l~~~v~~~~~~~~v~v~~g~~~a~v~~~di~~-~NGvIhvID~VL-~pp~ 158 (324)
T 1o70_A 101 QVPTVNNNTFLYFNVRGEGSDTVITVEGGGVNATVIQADVAQ-TNGYVHIIDHVL-GVPY 158 (324)
T ss_dssp CEEBSSTTCEEEEEEESCGGGCEEEEEETTEEEEEEEEEEEC-SSEEEEEESSCT-TSCC
T ss_pred EEEcCCCCceEEEEEeecCCceEEEEcCCceeEEEEeccccc-cCcEEEEEchhh-hhch
Confidence 67888644336666542 3689985 8999999875 679999999999 8765
No 7
>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1
Probab=99.69 E-value=6.5e-19 Score=153.04 Aligned_cols=116 Identities=22% Similarity=0.273 Sum_probs=88.6
Q ss_pred hhhhhhccccc-ceeeEEEEE-----EEeeeeecc-ceeEEeecCCCccccccccc----------cc-cceeeecCCCc
Q 019462 27 SNAVETLSNSG-YLSMALTLQ-----ITFKTLNLE-SKTLTIFSPSDFSFSQSGQL----------SL-SQLQYHISPSR 88 (340)
Q Consensus 27 ~n~~~~L~~~g-~~~~a~~l~-----~~~~~~~l~-~~~~TVFAPtd~AF~~~~~~----------~l-~lL~yHvvp~~ 88 (340)
.++.++|++.+ |..++.+++ .+.....+. .+ +|||||+|+||.+++.. .+ ++|+||+++++
T Consensus 28 ~~i~~~l~~~~~~s~f~~~l~~~~~~~agl~~~L~~~g-~TvFAPtn~AF~~l~~~~~~~L~~~~~~L~~iL~yHvv~g~ 106 (163)
T 1nyo_A 28 DPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLNSGQ-YTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVVAGQ 106 (163)
T ss_dssp SCHHHHHTTSTTTHHHHHHHHSSSCTTCCCHHHHTSSS-EEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHHHTEEESC
T ss_pred cCHHHHHHhCCCHHHHHHHHHhccccccCHHHHhCCCC-cEEEEECHHHHHhccHHHHHHHhcCHHHHHHHHHhceECCE
Confidence 56778888655 544555555 332222333 45 99999999999987521 12 79999999999
Q ss_pred cCccccchhhccCCccccccCceEEEEEccCCcceeeeeeeEeecCCCC-CccceEEeeehhhcccc
Q 019462 89 LSQDSLKTLAFGSRLPTLLSNHSLIVTVSDFNNAHLSINGVLIQESPMF-DQEELVVYGIDEFFNSS 154 (340)
Q Consensus 89 ~~~~~L~~l~~g~~l~Tl~~g~~l~vt~~~~~~~~v~vn~a~I~~~di~-~ng~~vVH~Id~VL~P~ 154 (340)
++.++|. | .++|+ .|+.|+|+..+ +.+++|+++|+.+|+. .|| +||+||+||.|+
T Consensus 107 ~~~~~l~----g-~~~Tl-~G~~l~v~~~~---~~v~vn~a~V~~~di~a~NG--vIHvID~VL~P~ 162 (163)
T 1nyo_A 107 TSPANVV----G-TRQTL-QGASVTVTGQG---NSLKVGNADVVCGGVSTANA--TVYMIDSVLMPP 162 (163)
T ss_dssp CCTTTSC----E-EEECT-TSSEEEEEECS---SCEEETTEECSSBCCCCSSE--EEBCBSSCCCCC
T ss_pred EcHHHhC----C-ccccC-CCCEEEEEEEC---CEEEEeccEEEECceEcCCE--EEEEECcEeCCC
Confidence 9999986 3 57776 68999999864 6799999999999996 677 999999999997
No 8
>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A
Probab=99.68 E-value=4.8e-19 Score=148.48 Aligned_cols=116 Identities=22% Similarity=0.318 Sum_probs=83.3
Q ss_pred hhhhhccccc-ceeeEEEEEEEeeeeec-cceeEEeecCCCccccccccc-------c---c-cceeeecCCCccCcccc
Q 019462 28 NAVETLSNSG-YLSMALTLQITFKTLNL-ESKTLTIFSPSDFSFSQSGQL-------S---L-SQLQYHISPSRLSQDSL 94 (340)
Q Consensus 28 n~~~~L~~~g-~~~~a~~l~~~~~~~~l-~~~~~TVFAPtd~AF~~~~~~-------~---l-~lL~yHvvp~~~~~~~L 94 (340)
++.++|++.+ |..++..++.++....+ ..+++|||||+|+||++++.. + + ++|+||++++.+..+++
T Consensus 3 ti~~~l~~~~~fs~~~~~l~~agl~~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~l~~iL~yHvv~~~~~~~~l 82 (132)
T 2vxp_A 3 TVMDVLKGDNRFSMLVAAIQSAGLTETLNREGVYTVFAPTNEAFRALPPRERSRLLGDAKELANILKYHIGDEILVSGGI 82 (132)
T ss_dssp CHHHHHTTSTTCHHHHHHHHHHTCHHHHHSSCCEEEEEECHHHHHHSCHHHHHHHHTCHHHHHHHHHHSBBSSCCCSTTC
T ss_pred cHHHHHHcCCCHHHHHHHHHHcCcHHHHcCCCCEEEEeECHHHHHhhCHHHHHHHhcCHHHHHHHHHhcCcCceeehhhc
Confidence 3456666544 33333333332211122 357999999999999987531 1 2 79999999999888887
Q ss_pred chhhccCCccccccCceEEEEEccCCcceeeeeeeEeecCCCC-CccceEEeeehhhcc
Q 019462 95 KTLAFGSRLPTLLSNHSLIVTVSDFNNAHLSINGVLIQESPMF-DQEELVVYGIDEFFN 152 (340)
Q Consensus 95 ~~l~~g~~l~Tl~~g~~l~vt~~~~~~~~v~vn~a~I~~~di~-~ng~~vVH~Id~VL~ 152 (340)
.. +..++|+ .|..++|+..+ +.+++|+++|+.+|+. .|| +||+||+||.
T Consensus 83 ~~---~~~~~tl-~G~~l~v~~~~---~~v~vn~a~v~~~di~a~NG--vIHvID~VLl 132 (132)
T 2vxp_A 83 GA---LVRLKSL-QGDKLEVSLKN---NVVSVNKEPVAEPDIMATNG--VVHVITNVLQ 132 (132)
T ss_dssp SS---CEEEEBT-TSSEEEEEEET---TEEEESSCBEEEEEEEETTE--EEEEESSCC-
T ss_pred cC---CceEecC-CCCEEEEEEeC---CEEEEeccEEEEcceecCCE--EEEEECcEeC
Confidence 53 4557776 78899998764 6799999999999985 777 9999999984
No 9
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=14.48 E-value=61 Score=24.97 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=18.0
Q ss_pred EEEECCceeecc---cccccceEEeeeccccc
Q 019462 282 VILLNGVPVVFP---DMYSSNWLVVHGLDSLL 310 (340)
Q Consensus 282 ~i~vn~a~V~~~---di~~~~~gvIH~Id~VL 310 (340)
.+.+.|..|..- +.+..-+|+||.||.|.
T Consensus 52 kItIEG~dIdfd~I~~~IE~~GgvIHSIDEVv 83 (100)
T 3bpd_A 52 KITILGNNLDYEQIKGVIEDMGGVIHSVDEVV 83 (100)
T ss_dssp EEEEEEEEECHHHHHHHHHTTTCEEEEEEEEE
T ss_pred EEEEEecCCCHHHHHHHHHHcCCeEEeeeeee
Confidence 556666544322 22345678999999886
No 10
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=10.17 E-value=68 Score=24.59 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=18.2
Q ss_pred EEEECCceeecc---cccccceEEeeeccccc
Q 019462 282 VILLNGVPVVFP---DMYSSNWLVVHGLDSLL 310 (340)
Q Consensus 282 ~i~vn~a~V~~~---di~~~~~gvIH~Id~VL 310 (340)
.+.+.|..+..- +.+..-+|+||.||.|.
T Consensus 52 kitiEG~~id~d~I~~~IE~~Gg~IHSIDEVv 83 (97)
T 2raq_A 52 KVTIQGNDLDFDEITRAIESYGGSIHSVDEVV 83 (97)
T ss_dssp EEEEECSSCCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred EEEEEecCCCHHHHHHHHHHcCCeEEeeeeee
Confidence 566666544322 12334678999999887
Done!