Query 019464
Match_columns 340
No_of_seqs 47 out of 49
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 09:40:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019464.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019464hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3875 Peroxisomal biogenesis 14.8 2.3E+02 0.0051 29.1 4.3 12 59-70 25-36 (362)
2 PF15228 DAP: Death-associated 11.7 1.6E+02 0.0034 24.8 1.8 7 1-7 13-19 (97)
3 PF05340 DUF740: Protein of un 11.5 1.5E+02 0.0033 32.4 2.0 30 22-52 269-300 (603)
4 PF12403 Pax2_C: Paired-box pr 10.1 3.2E+02 0.0069 24.2 3.2 48 9-57 29-89 (115)
5 TIGR01658 EYA-cons_domain eyes 7.1 1.4E+02 0.0031 29.7 -0.2 12 11-22 179-190 (274)
6 KOG3431 Apoptosis-related prot 6.0 2.5E+02 0.0054 25.3 0.7 17 290-306 113-129 (129)
7 COG4531 ZnuA ABC-type Zn2+ tra 5.8 4.3E+02 0.0094 26.9 2.3 8 312-319 133-140 (318)
8 COG4286 Uncharacterized conser 4.1 3.1E+02 0.0066 27.8 0.0 56 1-58 5-70 (306)
9 PF10529 Hist_rich_Ca-bd: Hist 3.7 6.9E+02 0.015 15.1 1.3 15 309-323 1-15 (15)
10 KOG0921 Dosage compensation co 3.5 6E+03 0.13 22.4 10.1 106 84-192 1159-1271(1282)
No 1
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=14.77 E-value=2.3e+02 Score=29.13 Aligned_cols=12 Identities=42% Similarity=0.805 Sum_probs=6.2
Q ss_pred CCCCCCCCCCCC
Q 019464 59 PQPAYGFQPGMG 70 (340)
Q Consensus 59 PkP~~Gf~p~~~ 70 (340)
|-|+|+|+.++-
T Consensus 25 plP~p~f~~s~s 36 (362)
T KOG3875|consen 25 PLPRPGFQSSVS 36 (362)
T ss_pred CCCCcccccccc
Confidence 334556665543
No 2
>PF15228 DAP: Death-associated protein
Probab=11.67 E-value=1.6e+02 Score=24.76 Aligned_cols=7 Identities=43% Similarity=0.781 Sum_probs=6.1
Q ss_pred Ccccccc
Q 019464 1 MRLVTHH 7 (340)
Q Consensus 1 ~~~~~~~ 7 (340)
||+|-||
T Consensus 13 mRI~qk~ 19 (97)
T PF15228_consen 13 MRIVQKK 19 (97)
T ss_pred CEeeccc
Confidence 8999877
No 3
>PF05340 DUF740: Protein of unknown function (DUF740); InterPro: IPR008004 This family consists of several uncharacterised plant chloroplastic proteins of unknown function.
Probab=11.46 E-value=1.5e+02 Score=32.37 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=27.6
Q ss_pred CCccccCCCCC--CCCccccCCCCCCCCCCCcC
Q 019464 22 SRRTRSLQPTL--TKLSITSTAPTPDQSLVPVS 52 (340)
Q Consensus 22 s~~tcs~~stl--~~~df~yd~p~yss~~ePs~ 52 (340)
-|+.|-.+|-+ ++.-|++|+|.|+ ..+|.|
T Consensus 269 GRRSCDtDPRfSlDagRiS~Dd~~~s-fdePRA 300 (603)
T PF05340_consen 269 GRRSCDTDPRFSLDAGRISVDDPRYS-FDEPRA 300 (603)
T ss_pred cccccCCCCceeeecccccccccccc-ccCCcc
Confidence 68899999987 9999999999998 899998
No 4
>PF12403 Pax2_C: Paired-box protein 2 C terminal; InterPro: IPR022130 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. The family is found in association with PF00292 from PFAM. This family is the C-terminal of the paired-box protein 2 which is a transcription factor involved in embryonic development and organogenesis.
Probab=10.07 E-value=3.2e+02 Score=24.23 Aligned_cols=48 Identities=23% Similarity=0.277 Sum_probs=32.1
Q ss_pred ccceeeeccc------ccCCCccccCCCCCC----CCcc---ccCCCCCCCCCCCcCCCCCC
Q 019464 9 RRQMVTSTTL------VPSSRRTRSLQPTLT----KLSI---TSTAPTPDQSLVPVSYPGRP 57 (340)
Q Consensus 9 ~~~~vt~~~~------~p~s~~tcs~~stl~----~~df---~yd~p~yss~~ePs~Y~~~~ 57 (340)
-|.|| ++|| ||+.-.+-++.++|. -.+| .|.-|+|++|.|.--+...+
T Consensus 29 GRdm~-stTLPGYPPHvPptgQgsY~sStiaGmV~GsefSG~pyshp~ytsYneaWRf~nps 89 (115)
T PF12403_consen 29 GRDMA-STTLPGYPPHVPPTGQGSYSSSTIAGMVPGSEFSGNPYSHPQYTSYNEAWRFPNPS 89 (115)
T ss_pred Ccccc-ccccCCCCCCCCCCCCCCcCccccCCCccccccCCCCCCCCcccccccccccCChh
Confidence 47787 4444 888888777777762 2233 36778899898887655443
No 5
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=7.10 E-value=1.4e+02 Score=29.68 Aligned_cols=12 Identities=50% Similarity=0.642 Sum_probs=10.2
Q ss_pred ceeeecccccCC
Q 019464 11 QMVTSTTLVPSS 22 (340)
Q Consensus 11 ~~vt~~~~~p~s 22 (340)
-|||+|.|||+-
T Consensus 179 vLVTs~qLVPaL 190 (274)
T TIGR01658 179 VLVTSGQLIPSL 190 (274)
T ss_pred EEEEcCccHHHH
Confidence 589999999963
No 6
>KOG3431 consensus Apoptosis-related protein/predicted DNA-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=6.00 E-value=2.5e+02 Score=25.32 Aligned_cols=17 Identities=29% Similarity=0.661 Sum_probs=11.7
Q ss_pred CccccCCCCCCCccccc
Q 019464 290 KFERKSSHGRSDDEEGY 306 (340)
Q Consensus 290 gyGRkkYgd~~ddee~y 306 (340)
+|.|++..+|||||+.+
T Consensus 113 ~f~RRr~~~Ddddd~D~ 129 (129)
T KOG3431|consen 113 KFDRRRFNDDDDDDDDL 129 (129)
T ss_pred eeeccccccCccccccC
Confidence 56777777777776643
No 7
>COG4531 ZnuA ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=5.79 E-value=4.3e+02 Score=26.90 Aligned_cols=8 Identities=38% Similarity=0.812 Sum_probs=2.9
Q ss_pred CCCCCCCC
Q 019464 312 YGYERRGD 319 (340)
Q Consensus 312 yg~d~k~~ 319 (340)
.|+++++|
T Consensus 133 ~~~dh~~d 140 (318)
T COG4531 133 AGADHKGD 140 (318)
T ss_pred cCccccCc
Confidence 33333333
No 8
>COG4286 Uncharacterized conserved protein related to MYG1 family [Function unknown]
Probab=4.07 E-value=3.1e+02 Score=27.82 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=39.9
Q ss_pred Cccccccccc--------ceeeecccccCCCccccCCCCC-CCCccccCCCCCCCCC-CCcCCCCCCC
Q 019464 1 MRLVTHHRRR--------QMVTSTTLVPSSRRTRSLQPTL-TKLSITSTAPTPDQSL-VPVSYPGRPQ 58 (340)
Q Consensus 1 ~~~~~~~~~~--------~~vt~~~~~p~s~~tcs~~stl-~~~df~yd~p~yss~~-ePs~Y~~~~~ 58 (340)
|.||||--+= -|+...+++|-+.-.||-+|.. ++.||-||+.- .|+ +-.-|-||++
T Consensus 5 ~~l~THsG~FHaDEvlA~~~L~~l~l~~dakIVRsRdp~~l~s~div~DVGg--~yd~e~krFDHHQr 70 (306)
T COG4286 5 MKLVTHSGSFHADEVLASAVLRLLDLFPDAKIVRSRDPQVLDSCDIVYDVGG--VYDPEKKRFDHHQR 70 (306)
T ss_pred ceEEecCCcccHHHHHHHHHHHHhccCCcceeeeccChhhhhcCCEEEecCc--cccccccccccccc
Confidence 5688885432 2333467899999999999999 99999999874 344 4444666664
No 9
>PF10529 Hist_rich_Ca-bd: Histidine-rich Calcium-binding repeat region; InterPro: IPR019552 This entry represents a histidine-rich calcium-binding repeat which appears in proteins called histidine-rich-calcium binding proteins (HRC). HRC is a high capacity, low affinity Ca2+-binding protein, residing in the lumen of the sarcoplasmic reticulum. HRC binds directly to triadin. This binding interaction occurs between the histidine-rich region of HRC and multiple clusters of charged amino acids, named KEKE motifs, in the lumenal domain of triadin. This repeat is found in the acidic region of the protein, which can be long and variable. There is also a cysteine-rich region further towards the C terminus []. HRC may regulate sarcoplasmic reticular calcium transport, play a critical role in maintaining calcium homeostasis, and function in the heart. HRC is a candidate regulator of sarcoplasmic reticular calcium uptake.
Probab=3.73 E-value=6.9e+02 Score=15.07 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCc
Q 019464 309 PCSYGYERRGDDDEH 323 (340)
Q Consensus 309 ~~~yg~d~k~~DDE~ 323 (340)
|++-+|...+|+|+.
T Consensus 1 HRhrgH~~eeDed~~ 15 (15)
T PF10529_consen 1 HRHRGHREEEDEDDD 15 (15)
T ss_pred CccCccccccccccC
No 10
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=3.54 E-value=6e+03 Score=22.38 Aligned_cols=106 Identities=28% Similarity=0.481 Sum_probs=0.0
Q ss_pred ccCCCC-CCCCCCCCC-----CCCCCCCCCCccCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCcccccCCCCCCCCCC
Q 019464 84 YASGYA-KRPDSQEYG-----SGYGKRPESEEYGSGYGRKPDSEVHGSG-YGRRPESGESGFGGRTESEYGGSAYGRKPE 156 (340)
Q Consensus 84 ygsgyg-g~~~~~eYG-----sGyG~~~~e~~YGsGyGr~~~~seYGSG-yG~~~e~~~~gyg~~~e~~Y~GsgYg~k~e 156 (340)
|+-|.+ -+..--+-| |||-+. ..+-.|-|||.-=-.--|||| ||+....-..+||.--.-.| +|+.+---
T Consensus 1159 ygDGp~PPKmaryDnG~~~n~SgyRRG-gssysgGGYGggys~gGygsGGYGgsa~~~~~~~Gagvg~Gy--rGvsrgGf 1235 (1282)
T KOG0921|consen 1159 YGDGPGPPKMARYDNGPSNNNSGYRRG-GSSYSGGGYGGGYSGGGYGSGGYGGSAPSARANYGAGVGNGY--RGVSRGGF 1235 (1282)
T ss_pred ccCCCCCcccccccCCCccCccccccC-CCCCCCCCcCCCCCCCCcCCCCCCCCCCCCCCCccccccCCC--ccccCCcc
Q ss_pred cCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCC
Q 019464 157 YESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYG 192 (340)
Q Consensus 157 ygsGYg~~~e~e~~yg~~s~YGsgYg~~~~ygsgYG 192 (340)
-+.|=|.-.....+|-+.-+++-+.|+.-.=+.+.|
T Consensus 1236 rnnggGdyrnpgggyrgsGGfgrgggrgagggGgfg 1271 (1282)
T KOG0921|consen 1236 RNNGGGDYRNPGGGYRGSGGFGRGGGRGAGGGGGFG 1271 (1282)
T ss_pred ccCCCCCCCCCCCCccCCCCcCCCCCCCCCCCCCCC
Done!