Query 019464
Match_columns 340
No_of_seqs 47 out of 49
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 16:30:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019464.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019464hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v8h_A Beta-alanine synthase; 19.2 18 0.00061 34.3 -0.8 9 315-323 455-463 (474)
2 2kcc_A Acetyl-COA carboxylase 16.1 54 0.0018 24.3 1.4 10 319-328 75-84 (84)
3 3e3v_A Regulatory protein RECX 14.7 37 0.0013 28.9 0.2 11 318-328 166-176 (177)
4 2xxp_A CPS2A; replication, pep 13.2 43 0.0015 32.2 0.2 11 318-328 388-398 (398)
5 2yhc_A BAMD, UPF0169 lipoprote 12.1 75 0.0026 25.6 1.2 6 323-328 220-225 (225)
6 2lfu_A GNA2132; beta-barrel, a 11.8 71 0.0024 28.2 1.1 9 320-328 185-193 (193)
7 2dtx_A Glucose 1-dehydrogenase 11.6 63 0.0022 27.8 0.7 11 318-328 254-264 (264)
8 2yfu_A Carbohydrate binding fa 11.2 52 0.0018 28.0 0.0 11 318-328 145-155 (155)
9 4fc4_A Nitrite transporter NIR 10.5 59 0.002 29.9 0.1 13 316-328 249-261 (261)
10 3kkj_A Amine oxidase, flavin-c 10.5 57 0.0019 24.6 0.0 7 322-328 330-336 (336)
No 1
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A
Probab=19.20 E-value=18 Score=34.35 Aligned_cols=9 Identities=44% Similarity=0.800 Sum_probs=1.4
Q ss_pred CCCCCCCCc
Q 019464 315 ERRGDDDEH 323 (340)
Q Consensus 315 d~k~~DDE~ 323 (340)
+...|||.|
T Consensus 455 ~~~~~~~~~ 463 (474)
T 2v8h_A 455 QFPGDDDDK 463 (474)
T ss_dssp HCC------
T ss_pred cCCCCcccc
Confidence 444555554
No 2
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=16.13 E-value=54 Score=24.25 Aligned_cols=10 Identities=50% Similarity=0.594 Sum_probs=4.7
Q ss_pred CCCCcCCCCC
Q 019464 319 DDDEHSGGSH 328 (340)
Q Consensus 319 ~DDE~~~~~~ 328 (340)
.+.|+|||||
T Consensus 75 ~~~~~~~~~~ 84 (84)
T 2kcc_A 75 DDLEHHHHHH 84 (84)
T ss_dssp SCSCCCCCCC
T ss_pred CChhhcccCC
Confidence 3444455544
No 3
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=14.70 E-value=37 Score=28.90 Aligned_cols=11 Identities=36% Similarity=0.166 Sum_probs=0.5
Q ss_pred CCCCCcCCCCC
Q 019464 318 GDDDEHSGGSH 328 (340)
Q Consensus 318 ~~DDE~~~~~~ 328 (340)
+.|||-|||||
T Consensus 166 ~~~~~~~~~~~ 176 (177)
T 3e3v_A 166 IFDDEGHHHHH 176 (177)
T ss_dssp C----------
T ss_pred CCCcccccccC
Confidence 45666544444
No 4
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=13.21 E-value=43 Score=32.21 Aligned_cols=11 Identities=27% Similarity=0.253 Sum_probs=0.4
Q ss_pred CCCCCcCCCCC
Q 019464 318 GDDDEHSGGSH 328 (340)
Q Consensus 318 ~~DDE~~~~~~ 328 (340)
++.||||||||
T Consensus 388 ~~~~~~~~~~~ 398 (398)
T 2xxp_A 388 AAALEHHHHHH 398 (398)
T ss_dssp C----------
T ss_pred CchhhhcccCC
Confidence 44455555555
No 5
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=12.06 E-value=75 Score=25.62 Aligned_cols=6 Identities=33% Similarity=0.490 Sum_probs=2.5
Q ss_pred cCCCCC
Q 019464 323 HSGGSH 328 (340)
Q Consensus 323 ~~~~~~ 328 (340)
||||||
T Consensus 220 ~~~~~~ 225 (225)
T 2yhc_A 220 HHHHHH 225 (225)
T ss_dssp CTTCCC
T ss_pred hcccCC
Confidence 344443
No 6
>2lfu_A GNA2132; beta-barrel, antigen, membrane protein; NMR {Neisseria meningitidis}
Probab=11.78 E-value=71 Score=28.23 Aligned_cols=9 Identities=44% Similarity=0.486 Sum_probs=5.6
Q ss_pred CCCcCCCCC
Q 019464 320 DDEHSGGSH 328 (340)
Q Consensus 320 DDE~~~~~~ 328 (340)
++|||||||
T Consensus 185 ~~~~~~~~~ 193 (193)
T 2lfu_A 185 DLEHHHHHH 193 (193)
T ss_dssp TTCSCSSCC
T ss_pred cccccccCC
Confidence 566666665
No 7
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Probab=11.64 E-value=63 Score=27.77 Aligned_cols=11 Identities=27% Similarity=0.283 Sum_probs=1.1
Q ss_pred CCCCCcCCCCC
Q 019464 318 GDDDEHSGGSH 328 (340)
Q Consensus 318 ~~DDE~~~~~~ 328 (340)
.++.|||||||
T Consensus 254 ~~~~~~~~~~~ 264 (264)
T 2dtx_A 254 TPELEHHHHHH 264 (264)
T ss_dssp CCC--------
T ss_pred CcchhccccCC
Confidence 33334444443
No 8
>2yfu_A Carbohydrate binding family 6; sugar binding protein; 1.65A {Clostridium thermocellum} PDB: 2y8j_A* 2y9i_A* 2y9s_A 2yb7_A* 2y8m_A 2yfz_A* 2yg0_A*
Probab=11.23 E-value=52 Score=28.01 Aligned_cols=11 Identities=45% Similarity=0.552 Sum_probs=0.0
Q ss_pred CCCCCcCCCCC
Q 019464 318 GDDDEHSGGSH 328 (340)
Q Consensus 318 ~~DDE~~~~~~ 328 (340)
.+|-|||||||
T Consensus 145 ~~~~~~~~~~~ 155 (155)
T 2yfu_A 145 NDDLEHHHHHH 155 (155)
T ss_dssp -----------
T ss_pred ccchhhcccCC
Confidence 34444555544
No 9
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=10.55 E-value=59 Score=29.89 Aligned_cols=13 Identities=23% Similarity=0.243 Sum_probs=0.0
Q ss_pred CCCCCCCcCCCCC
Q 019464 316 RRGDDDEHSGGSH 328 (340)
Q Consensus 316 ~k~~DDE~~~~~~ 328 (340)
++..++|||||||
T Consensus 249 ~~~~~~~~~~~~~ 261 (261)
T 4fc4_A 249 TPKSELEHHHHHH 261 (261)
T ss_dssp C------------
T ss_pred HccccccccccCC
No 10
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=10.53 E-value=57 Score=24.64 Aligned_cols=7 Identities=43% Similarity=0.591 Sum_probs=0.0
Q ss_pred CcCCCCC
Q 019464 322 EHSGGSH 328 (340)
Q Consensus 322 E~~~~~~ 328 (340)
|||||||
T Consensus 330 e~~~~~~ 336 (336)
T 3kkj_A 330 EHHHHHH 336 (336)
T ss_dssp -------
T ss_pred cCCccCC
Done!