Query 019464
Match_columns 340
No_of_seqs 47 out of 49
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 16:30:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019464.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019464hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q59a_ f.1.4.1 (A:) Early ant 8.9 58 0.0042 26.8 1.5 7 322-328 166-172 (172)
2 d1np7a1 a.99.1.1 (A:205-483) C 2.3 1.1E+02 0.0078 25.4 -1.5 11 5-15 149-159 (279)
3 d1d0gr3 g.24.1.1 (R:102-128) D 2.2 3E+02 0.022 16.3 1.0 19 9-27 7-25 (27)
4 d2o39c2 g.18.1.1 (C:63-126) CD 1.9 4.2E+02 0.031 16.7 1.5 17 24-40 1-17 (64)
5 d1wc2a1 b.52.1.1 (A:1-180) End 1.8 5.9E+02 0.043 20.4 2.5 42 10-52 94-145 (180)
6 d1x4na1 d.51.1.1 (A:8-86) Far 1.7 3.2E+02 0.023 17.9 0.6 17 6-22 1-17 (79)
7 d1dnpa1 a.99.1.1 (A:201-469) C 1.7 1.6E+02 0.012 23.9 -1.5 11 5-15 139-149 (269)
8 d1ieha_ b.1.1.1 (A:) Camelid I 1.6 4.3E+02 0.032 20.4 1.1 9 320-328 127-135 (135)
9 d1nxia_ d.58.47.1 (A:) Hypothe 1.6 3.8E+02 0.028 20.2 0.8 7 322-328 126-132 (132)
10 d1lr0a_ d.212.1.1 (A:) TolA {P 1.5 3.9E+02 0.028 19.3 0.6 5 324-328 122-126 (126)
No 1
>d1q59a_ f.1.4.1 (A:) Early antigen protein R {Epstein-Barr virus [TaxId: 10376]}
Probab=8.86 E-value=58 Score=26.77 Aligned_cols=7 Identities=43% Similarity=0.591 Sum_probs=3.0
Q ss_pred CcCCCCC
Q 019464 322 EHSGGSH 328 (340)
Q Consensus 322 E~~~~~~ 328 (340)
|+|||||
T Consensus 166 ~~~~~~~ 172 (172)
T d1q59a_ 166 EHHHHHH 172 (172)
T ss_dssp CSCCSCC
T ss_pred hhhccCC
Confidence 3444443
No 2
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain {Synechocystis sp., pcc 6803 [TaxId: 1143]}
Probab=2.34 E-value=1.1e+02 Score=25.36 Aligned_cols=11 Identities=45% Similarity=0.471 Sum_probs=7.9
Q ss_pred ccccccceeee
Q 019464 5 THHRRRQMVTS 15 (340)
Q Consensus 5 ~~~~~~~~vt~ 15 (340)
.|||-|.||++
T Consensus 149 ~Hn~~Rm~vas 159 (279)
T d1np7a1 149 MSNRGRQNVAS 159 (279)
T ss_dssp CCHHHHHHHHH
T ss_pred ccHHHHHHHHH
Confidence 47777877764
No 3
>d1d0gr3 g.24.1.1 (R:102-128) Death receptor-5 (dr5) fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.25 E-value=3e+02 Score=16.30 Aligned_cols=19 Identities=26% Similarity=0.134 Sum_probs=15.3
Q ss_pred ccceeeecccccCCCcccc
Q 019464 9 RRQMVTSTTLVPSSRRTRS 27 (340)
Q Consensus 9 ~~~~vt~~~~~p~s~~tcs 27 (340)
-|-||....-.|-||-.|-
T Consensus 7 prg~vkv~dctpwsdi~cv 25 (27)
T d1d0gr3 7 PRGMVKVGDCTPWSDIECV 25 (27)
T ss_dssp CTTCEEEECCBTTBCCEEE
T ss_pred CCcceEeccCcccccceee
Confidence 3779999888898888773
No 4
>d2o39c2 g.18.1.1 (C:63-126) CD46 (membrane cofactor protein, MCP) {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.94 E-value=4.2e+02 Score=16.66 Aligned_cols=17 Identities=6% Similarity=-0.164 Sum_probs=10.7
Q ss_pred ccccCCCCCCCCccccC
Q 019464 24 RTRSLQPTLTKLSITST 40 (340)
Q Consensus 24 ~tcs~~stl~~~df~yd 40 (340)
+||..++.+.+..+...
T Consensus 1 ~tC~~p~~p~nG~~~~~ 17 (64)
T d2o39c2 1 ETCPYIRDPLNGQAVPA 17 (64)
T ss_dssp CBCCCCCCCTTEEEECT
T ss_pred CcCcCCCCCCCCEEEcC
Confidence 47777777766655443
No 5
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]}
Probab=1.80 E-value=5.9e+02 Score=20.36 Aligned_cols=42 Identities=12% Similarity=-0.009 Sum_probs=28.5
Q ss_pred cceeeecccccC---CCccccCCCCC-------CCCccccCCCCCCCCCCCcC
Q 019464 10 RQMVTSTTLVPS---SRRTRSLQPTL-------TKLSITSTAPTPDQSLVPVS 52 (340)
Q Consensus 10 ~~~vt~~~~~p~---s~~tcs~~stl-------~~~df~yd~p~yss~~ePs~ 52 (340)
--+||.|-|-|+ ...-|.++... ...|||. .+.|...+.-.+
T Consensus 94 sV~V~iTd~CP~n~~n~gWCn~p~~~~~~n~~g~~~HFDL-s~af~~ia~~~~ 145 (180)
T d1wc2a1 94 SKTFMITNLCPNIYPNQDWCNQGSQYGGHNKYGYELHLDL-ENGRSQVTGMGW 145 (180)
T ss_dssp EEEEEEEEEECSSTTSTTTSCCSSSSSCCCTTSCSEEEEE-ECTTSTTGGGTC
T ss_pred cEEEEEEecCCCCCCCCCccCCccccccccccCcccceec-hHHHHHHhhhcC
Confidence 457899999996 44567766542 3458998 477877766543
No 6
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.72 E-value=3.2e+02 Score=17.92 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=11.3
Q ss_pred cccccceeeecccccCC
Q 019464 6 HHRRRQMVTSTTLVPSS 22 (340)
Q Consensus 6 ~~~~~~~vt~~~~~p~s 22 (340)
|...+.|||..-+||.+
T Consensus 1 ~q~~~~~~t~~i~IP~~ 17 (79)
T d1x4na1 1 HQQQRSVMTEEYKVPDG 17 (79)
T ss_dssp CCCCCCCEEEEEEEEHH
T ss_pred CCCcCCcEEEEEEEChH
Confidence 45566777777777754
No 7
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase {Escherichia coli [TaxId: 562]}
Probab=1.65 E-value=1.6e+02 Score=23.95 Aligned_cols=11 Identities=36% Similarity=0.549 Sum_probs=7.2
Q ss_pred ccccccceeee
Q 019464 5 THHRRRQMVTS 15 (340)
Q Consensus 5 ~~~~~~~~vt~ 15 (340)
.|||-|+||.+
T Consensus 139 mhn~~Rm~~as 149 (269)
T d1dnpa1 139 MHNRLRMITAS 149 (269)
T ss_dssp CCHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 36777777654
No 8
>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}
Probab=1.57 E-value=4.3e+02 Score=20.41 Aligned_cols=9 Identities=22% Similarity=0.320 Sum_probs=0.0
Q ss_pred CCCcCCCCC
Q 019464 320 DDEHSGGSH 328 (340)
Q Consensus 320 DDE~~~~~~ 328 (340)
.+.+|||||
T Consensus 127 ~~~~~~~~~ 135 (135)
T d1ieha_ 127 EDLNHHHHH 135 (135)
T ss_dssp CCCSSSCCC
T ss_pred ecCcccccC
No 9
>d1nxia_ d.58.47.1 (A:) Hypothetical protein VC0424 {Vibrio cholerae [TaxId: 666]}
Probab=1.56 E-value=3.8e+02 Score=20.20 Aligned_cols=7 Identities=43% Similarity=0.591 Sum_probs=0.0
Q ss_pred CcCCCCC
Q 019464 322 EHSGGSH 328 (340)
Q Consensus 322 E~~~~~~ 328 (340)
|+|||||
T Consensus 126 ~~~~~~~ 132 (132)
T d1nxia_ 126 EHHHHHH 132 (132)
T ss_dssp CCCSSCC
T ss_pred hccccCC
No 10
>d1lr0a_ d.212.1.1 (A:) TolA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=1.46 E-value=3.9e+02 Score=19.33 Aligned_cols=5 Identities=20% Similarity=0.188 Sum_probs=0.0
Q ss_pred CCCCC
Q 019464 324 SGGSH 328 (340)
Q Consensus 324 ~~~~~ 328 (340)
|||||
T Consensus 122 ~~~~~ 126 (126)
T d1lr0a_ 122 HHHHH 126 (126)
T ss_dssp TCCCC
T ss_pred ccccC
Done!