BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019465
         (340 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WML|A Chain A, Crystal Structure Of A Mammalian Sialyltransferase
          Length = 298

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 32/177 (18%)

Query: 49  KKCAVVGNSGDLLKTEFGEEIDSHDAVIRDNEAP-------VNQRYAKHVGLKRDFRLVV 101
           ++CAVVGNSG+L ++ +G +IDSHD V+R N+AP       V  +   H      FR + 
Sbjct: 98  RRCAVVGNSGNLKESYYGPQIDSHDFVLRXNKAPTEGFEADVGSKTTHHFVYPESFRELA 157

Query: 102 RGAARNMVAILKGSTDEVLIIKSVTHKDFNAMIKSIPNPVYL-----------FQGIVLR 150
           +  +  +V     +TD   +I + T    +     +P  + +           F   V  
Sbjct: 158 QEVSXILVPF--KTTDLEWVISATTTGRISHTYVPVPAKIKVKKEKILIYHPAFIKYVFD 215

Query: 151 RGAKG------TGMKSIELALSMCDIVDIYGFTVDPGYTEWTRYFSTPRKGHNPLQG 201
           R  +G      TG+ S+  +L +CD VD+YGF  D     W  Y+      +NP  G
Sbjct: 216 RWLQGHGRYPSTGILSVIFSLHICDEVDLYGFGAD-SKGNWHHYWE-----NNPSAG 266


>pdb|2WNB|A Chain A, Crystal Structure Of A Mammalian Sialyltransferase In
           Complex With Disaccharide And Cmp
 pdb|2WNF|A Chain A, Crystal Structure Of A Mammalian Sialyltransferase In
           Complex With Gal-Beta-1-3galnac-Ortho-Nitrophenol
          Length = 298

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 32/177 (18%)

Query: 49  KKCAVVGNSGDLLKTEFGEEIDSHDAVIRDNEAP-------VNQRYAKHVGLKRDFRLVV 101
           ++CAVVGNSG+L ++ +G +IDSHD V+R N+AP       V  +   H      FR + 
Sbjct: 98  RRCAVVGNSGNLKESYYGPQIDSHDFVLRXNKAPTEGFEADVGSKTTHHFVYPESFRELA 157

Query: 102 RGAARNMVAILKGSTDEVLIIKSVTHKDFNAMIKSIPNPVYL-----------FQGIVLR 150
           +  +  +V     +TD   +I + T    +     +P  + +           F   V  
Sbjct: 158 QEVSXILVPF--KTTDLEWVISATTTGRISHTYVPVPAKIKVKKEKILIYHPAFIKYVFD 215

Query: 151 RGAKG------TGMKSIELALSMCDIVDIYGFTVDPGYTEWTRYFSTPRKGHNPLQG 201
           R  +G      TG+ S+  +L +CD VD+YGF  D     W  Y+      +NP  G
Sbjct: 216 RWLQGHGRYPSTGILSVIFSLHICDEVDLYGFGAD-SKGNWHHYWE-----NNPSAG 266


>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
 pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
          Length = 307

 Score = 28.9 bits (63), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 5/41 (12%)

Query: 55  GNSGDLLKTEFGEEIDSHDAVIRDNEAPVNQRYAKHVGLKR 95
           GN      +EFG ++D HDAV      PV Q + +   ++R
Sbjct: 103 GNVKKFFPSEFGLDVDRHDAV-----EPVRQVFEEKASIRR 138


>pdb|1T6S|A Chain A, Crystal Structure Of A Conserved Hypothetical Protein From
           Chlorobium Tepidum
 pdb|1T6S|B Chain B, Crystal Structure Of A Conserved Hypothetical Protein From
           Chlorobium Tepidum
          Length = 162

 Score = 28.1 bits (61), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 174 YGFTVDPGYTEWTRYFSTPRKGHNPLQGRAYYQLLECLGVIRIHSPMRAERKQDWSDVPS 233
           Y F  +P + +  R    P      +Q R    +LE L V+  H P+     Q       
Sbjct: 68  YRFLTEPEFADLVRQLLAP-----VIQRRLSRSMLEVLAVVAWHQPVTKGEIQQIRGASP 122

Query: 234 REMISRAHAAALRLKRGQSGDLG---QFGSCKVW 264
              I R  A  L   RG++   G   Q+G+ +V+
Sbjct: 123 DYSIDRLLARGLIEVRGRADSPGRPLQYGTTEVF 156


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,125,350
Number of Sequences: 62578
Number of extensions: 405763
Number of successful extensions: 648
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 644
Number of HSP's gapped (non-prelim): 4
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)