Query 019465
Match_columns 340
No_of_seqs 170 out of 675
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 16:31:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019465.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019465hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wnf_A CMP-N-acetylneuraminate 100.0 6.1E-51 2.1E-55 390.7 12.7 188 25-220 70-298 (298)
2 1ro7_A Alpha-2,3/8-sialyltrans 99.9 1.3E-21 4.6E-26 184.0 13.5 168 49-219 2-211 (259)
3 2p2v_A Alpha-2,3-sialyltransfe 99.9 3.5E-21 1.2E-25 184.0 13.0 168 46-217 17-226 (288)
4 2wqq_A Alpha-2,3-/2,8-sialyltr 99.8 2.3E-21 7.8E-26 185.3 10.1 167 49-218 2-210 (291)
5 2xvc_A ESCRT-III, SSO0910; cel 14.4 1.1E+02 0.0037 22.4 2.5 16 202-217 43-58 (59)
6 2ook_A Hypothetical protein; s 11.8 93 0.0032 25.0 1.7 16 46-61 83-98 (127)
7 2kl8_A OR15; structural genomi 9.6 1.7E+02 0.0058 22.0 2.3 24 303-326 20-43 (85)
8 3bqo_B TERF1-interacting nucle 9.6 80 0.0027 19.5 0.4 7 77-83 2-8 (26)
9 2q3l_A Uncharacterized protein 9.5 92 0.0031 25.0 0.9 14 46-59 83-96 (126)
10 2v40_A Adenylosuccinate synthe 6.6 1.6E+02 0.0056 29.5 1.4 62 35-102 21-87 (459)
No 1
>2wnf_A CMP-N-acetylneuraminate-beta-galactosamide-alpha- 2,3-sialyltransferase; glycosyltransferase, disulfide bond, golgi apparatus, glycoprotein; HET: CG3 A2G GAL; 1.25A {Sus scrofa} PDB: 2wnb_A* 2wml_A
Probab=100.00 E-value=6.1e-51 Score=390.73 Aligned_cols=188 Identities=27% Similarity=0.445 Sum_probs=145.3
Q ss_pred chhhhHHHHhccCCCCCC-CCC---CCcceEEEEcCCCCCCCCcCCccccccceeeecCCCcccccccCCCCcCceeEee
Q 019465 25 NRTLCEEHLNLILPAKPP-FRP---RQFKKCAVVGNSGDLLKTEFGEEIDSHDAVIRDNEAPVNQRYAKHVGLKRDFRLV 100 (340)
Q Consensus 25 ~~s~~~~~L~~~lP~~sP-~~~---~~c~~CAVVGNSGiL~gS~cG~EIDs~D~VIR~N~APv~~gye~DVGsKTt~~~~ 100 (340)
+...+.++|+.++|+.+| |.. .+|++||||||||||+||+||+|||+||||||||+||+ +|||+|||+|||++++
T Consensus 70 ~~~~v~~~l~~~lP~~~~~~~~~~~~~~~~CAVVGNsGiL~~S~~G~eIDs~D~ViR~N~aP~-~gye~DVG~KTt~~~~ 148 (298)
T 2wnf_A 70 NLNDTIRELFQVVPGNVDPLLEKRLVSCRRCAVVGNSGNLKESYYGPQIDSHDFVLRMNKAPT-EGFEADVGSKTTHHFV 148 (298)
T ss_dssp CHHHHHHHHTTTSCSCCCTTTTGGGCSCCEEEEECCBGGGTTCCCHHHHHTSSEEEEETTCCC-TTCHHHHCSCCSEEEE
T ss_pred cHHHHHHHHHHhCCCccccccccccCCCCeEEEECCccccCCCCccccccchhheeccCcCCc-CcccccCccCceeEEe
Confidence 556788999999999987 876 89999999999999999999999999999999999999 7999999999999999
Q ss_pred ccchhhhHHhhhcCCCCeEEEEeccchhhHHH-------------------------HHhhcCCcceee---hhhhhcc-
Q 019465 101 VRGAARNMVAILKGSTDEVLIIKSVTHKDFNA-------------------------MIKSIPNPVYLF---QGIVLRR- 151 (340)
Q Consensus 101 n~~~~~~~~~~L~~~~~~~l~ik~~~~~d~~~-------------------------~~k~i~nP~~l~---~~~~~r~- 151 (340)
|++++.... .+..+++..+...++.. ....+.||.++. +.|..+.
T Consensus 149 n~~s~~~~~------~~~~~v~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~P~~~~~~~~~w~~~~~ 222 (298)
T 2wnf_A 149 YPESFRELA------QEVSMILVPFKTTDLEWVISATTTGRISHTYVPVPAKIKVKKEKILIYHPAFIKYVFDRWLQGHG 222 (298)
T ss_dssp BTTBCCCCC------TTCEEEECCSSHHHHHHHHHHTTTCCCCBSSSBCCSCCCCCGGGEEEBCHHHHHHHHHHTSTTCS
T ss_pred ccccccccC------CCceEEEeecCccchhhhhHhhcCCcccchhhhhhHHhhccCCeEEEeCHHHHHHHHHHHHHhCC
Confidence 998764321 11112211111111110 001245666543 2232222
Q ss_pred CCCCcHHHHHHHHHhcCCeEEEeeeeeCCCCCccccccCCCC--------CCCCchhHHHHHHHHHhcCcEEEEcCC
Q 019465 152 GAKGTGMKSIELALSMCDIVDIYGFTVDPGYTEWTRYFSTPR--------KGHNPLQGRAYYQLLECLGVIRIHSPM 220 (340)
Q Consensus 152 ~~pSTGll~i~lAL~lCDeV~lYGF~pd~~~~~~~HYYd~~~--------~~H~~~~E~~~~q~Lh~~GvIrlh~~~ 220 (340)
.+||||++++++||++||||+||||++|. +..||||||+.. +.|+|.+|++++++||++|+|+||++.
T Consensus 223 ~~pSTG~~~v~lAl~~CDeV~lYGF~~d~-~~~~~HYyd~~~~~~~~~~~~~H~~~~E~~~~~~Lh~~G~i~l~~g~ 298 (298)
T 2wnf_A 223 RYPSTGILSVIFSLHICDEVDLYGFGADS-KGNWHHYWENNPSAGAFRKTGVHDGDFESNVTTILASINKIRIFKGR 298 (298)
T ss_dssp SSCCHHHHHHHHHHHHCSEEEEESCSCCT-TSCCCBTTC-----------CCSCHHHHHHHHHHHHHTTSSEEECCC
T ss_pred CCCchhHHHHHHHHHhCCEEEEeeeccCC-CCCceecccCccccccccCCCCCCcHHHHHHHHHHHHCCCEEEEeCC
Confidence 37999999999999999999999999875 456899999752 579999999999999999999999873
No 2
>1ro7_A Alpha-2,3/8-sialyltransferase; mixed alpha/beta, rossmann fold; HET: CSF; 1.80A {Campylobacter jejuni} SCOP: c.130.1.1 PDB: 1ro8_A* 2drj_A* 2x62_A* 2x61_A* 2x63_A*
Probab=99.86 E-value=1.3e-21 Score=184.03 Aligned_cols=168 Identities=13% Similarity=0.120 Sum_probs=114.9
Q ss_pred ceEEEEcCCCCCCCCcCCccccccceeeecCCCcccccccCCCCcCceeEeeccchhhhHHhhh----cC--CCCeEEEE
Q 019465 49 KKCAVVGNSGDLLKTEFGEEIDSHDAVIRDNEAPVNQRYAKHVGLKRDFRLVVRGAARNMVAIL----KG--STDEVLII 122 (340)
Q Consensus 49 ~~CAVVGNSGiL~gS~cG~EIDs~D~VIR~N~APv~~gye~DVGsKTt~~~~n~~~~~~~~~~L----~~--~~~~~l~i 122 (340)
++|+||||||+|++..++. ||+.++|||||.++....| |||+||+++++||+........+ .. .....++.
T Consensus 2 k~c~ivGNGpsL~~id~~~-l~~~~~v~r~N~~~~~d~y--~VG~kt~~v~~NPsv~~~~~~~l~~~~~~~~~~~~~i~~ 78 (259)
T 1ro7_A 2 KKVIIAGNGPSLKEIDYSR-LPNDFDVFRCNQFYFEDKY--YLGKKCKAVFYNPSLFFEQYYTLKHLIQNQEYETELIMC 78 (259)
T ss_dssp CEEEEECCSGGGGCCCTTS-CCSSEEEEEETTGGGCSEE--TTCSEEEEEEECGGGHHHHHHHHHHHHHTTSCEEEEEEE
T ss_pred ceEEEEeCcHHHhhhhhhh-hccCCeEEEEeChhhcCcc--ccccccceEEECcHHHHHHHHHHHHHHhhcccccceEee
Confidence 5899999999999888885 8887779999999874346 69999999999998864322211 12 22223332
Q ss_pred eccch-----hhHHHHHhh-----cCCcceee--hhhhh--------ccCCCCcHHHHHHHHHhc-CCeEEEeee-----
Q 019465 123 KSVTH-----KDFNAMIKS-----IPNPVYLF--QGIVL--------RRGAKGTGMKSIELALSM-CDIVDIYGF----- 176 (340)
Q Consensus 123 k~~~~-----~d~~~~~k~-----i~nP~~l~--~~~~~--------r~~~pSTGll~i~lAL~l-CDeV~lYGF----- 176 (340)
..... ..+...++. ..++.++. +.++. ...++|||++|+.+|+.+ |+||+||||
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~f~~~~~~~~~~~~~r~stGl~~~~lA~~lGckeIyLyG~D~~~~ 158 (259)
T 1ro7_A 79 SNYNQAHLENENFVKTFYDYFPDAHLGYDFFKQLKDFNAYFKFHEIYFNQRITSGVYMCAVAIALGYKEIYLSGIDFYQN 158 (259)
T ss_dssp CCCSCTTTSCHHHHHTHHHHSTTCEETHHHHTTSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTCCEEEEESCCTTTT
T ss_pred ecccccccchHHHHHHHHHhcCccccCchhhhHHHHHHHhhhhcccccccCcCHHHHHHHHHHHCCCCEEEEEeEcCCCC
Confidence 22111 111111111 11222211 11111 134789999999999999 999999999
Q ss_pred ---eeCCCCC-----ccccccCCCC--CCCCchhHHHHHHHHHhcCcEEEEcC
Q 019465 177 ---TVDPGYT-----EWTRYFSTPR--KGHNPLQGRAYYQLLECLGVIRIHSP 219 (340)
Q Consensus 177 ---~pd~~~~-----~~~HYYd~~~--~~H~~~~E~~~~q~Lh~~GvIrlh~~ 219 (340)
||+.... ..+|||++.. ..|+|+.|++.++.||++|-+++..-
T Consensus 159 ~~~~~Y~~~~~~~~~i~~hy~d~~~~~~~H~m~~Ef~al~~Lh~~g~v~I~nl 211 (259)
T 1ro7_A 159 GSSYAFDTKQKNLLKLAPNFKNDNSHYIGHSKNTDIKALEFLEKTYKIKLYCL 211 (259)
T ss_dssp SSCCSSCCCCHHHHHHCGGGGSSCCCCTTCCHHHHHHHHHHHHHHHTCEEEES
T ss_pred CCCcCCCCCcccccccCcccccccCCccccCchHHHHHHHHHHHhCCeEEEEC
Confidence 8765332 4589998753 57999999999999999998888743
No 3
>2p2v_A Alpha-2,3-sialyltransferase; mixed alpha-beta; HET: CSF; 1.85A {Campylobacter jejuni} PDB: 2p56_A
Probab=99.85 E-value=3.5e-21 Score=184.02 Aligned_cols=168 Identities=13% Similarity=0.142 Sum_probs=115.3
Q ss_pred CCcceEEEEcCCCCCCCCcCCccccccceeeecCCCcccccccCCCCcCceeEeeccchhhhHHhhhc----C--CCCeE
Q 019465 46 RQFKKCAVVGNSGDLLKTEFGEEIDSHDAVIRDNEAPVNQRYAKHVGLKRDFRLVVRGAARNMVAILK----G--STDEV 119 (340)
Q Consensus 46 ~~c~~CAVVGNSGiL~gS~cG~EIDs~D~VIR~N~APv~~gye~DVGsKTt~~~~n~~~~~~~~~~L~----~--~~~~~ 119 (340)
...++|+||||||+|.++. |.+||+.|+|||||.||....| +||++|.+++++|+........+. . +....
T Consensus 17 ~~~~~c~IvGNGPSL~~~~-~~~i~~~~~v~rvN~~~~~~~~--~~g~~~~yv~~dp~~~~~~~~~l~~l~~~~~y~~~~ 93 (288)
T 2p2v_A 17 KNMQNIIIAGNGPSLKNIN-YKRLPREYDVFRCNQFYFEDKY--YLGKKIKAVFFNPGVFLQQYHTAKQLILKNEYEIKN 93 (288)
T ss_dssp TTCCEEEEECCSGGGGGCC-GGGSCSSCEEEEETTGGGCSBC--TTCSEESEEEECGGGHHHHHHHHHHHHHTTSCEECC
T ss_pred CCCCeEEEEecChhhcCCC-chhhccCCEEEEEcChHhcCcc--cccccceEEEECcHHHHHHHHHHHhhhhcccccccE
Confidence 4578999999999999998 9999999999999999985557 599999999999987653322221 1 11122
Q ss_pred EEEeccch---h--hHHHHHhh-cCCc----ceee--hhhhh--------ccCCCCcHHHHHHHHHhc-CCeEEEeeeee
Q 019465 120 LIIKSVTH---K--DFNAMIKS-IPNP----VYLF--QGIVL--------RRGAKGTGMKSIELALSM-CDIVDIYGFTV 178 (340)
Q Consensus 120 l~ik~~~~---~--d~~~~~k~-i~nP----~~l~--~~~~~--------r~~~pSTGll~i~lAL~l-CDeV~lYGF~p 178 (340)
++.+.... + .....++. ..+. .++. ..+|. ...++|||++|+.+|+.+ ||||+||||..
T Consensus 94 i~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~l~~l~~fw~~~~~~~~~~~~r~StGl~~l~iA~~lGckeIyLyGfD~ 173 (288)
T 2p2v_A 94 IFCSTFNLPFIESNDFLHQFYNFFPDAKLGYEVIENLKEFYAYIKYNEIYFNKRITSGVYMCAIAIALGYKTIYLCGIDF 173 (288)
T ss_dssp EEECCCCCTTTSCHHHHHHHHHHCTTCEETHHHHTTSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTCCEEEEESCCT
T ss_pred EEeeecccccchHHHHHHHHHHhCCCceEeehhhhHHHHHhhhhhhcccccccCcchHHHHHHHHHHcCCCEEEEeeecC
Confidence 33332211 1 11111211 1111 1110 11221 234799999999999999 99999999932
Q ss_pred CCCCCccccccCC---------------CCCCCCchhHHHHHHHHHhcCcEEEE
Q 019465 179 DPGYTEWTRYFST---------------PRKGHNPLQGRAYYQLLECLGVIRIH 217 (340)
Q Consensus 179 d~~~~~~~HYYd~---------------~~~~H~~~~E~~~~q~Lh~~GvIrlh 217 (340)
. +....|||++. ....|+|..|++.++.||++|-|+++
T Consensus 174 ~-~~~~~yhYd~~~~~~~~~~~~~~~~k~~~~H~m~~e~~al~~Lh~~g~v~iy 226 (288)
T 2p2v_A 174 Y-EGDVIYPFEAMSTNIKTIFPGIKDFKPSNCHSKEYDIEALKLLKSIYKVNIY 226 (288)
T ss_dssp T-CSSCCCSSCSSCHHHHHHSCC--CCCCCTTCCHHHHHHHHHHHHHHHTCEEE
T ss_pred C-CCCCcccccCccccccccccccccccCCcccCCHHHHHHHHHHHHhcCceEE
Confidence 1 33556786553 13689999999999999999877766
No 4
>2wqq_A Alpha-2,3-/2,8-sialyltransferase; GTA, cstii, glycosyltransfer; HET: CSF; 2.25A {Campylobacter jejuni}
Probab=99.84 E-value=2.3e-21 Score=185.35 Aligned_cols=167 Identities=13% Similarity=0.098 Sum_probs=112.5
Q ss_pred ceEEEEcCCCCCCCCcCCccccccceeeecCCCcccccccCCCCcCceeEeeccchhhhHHhh----hcC--CCCeEEEE
Q 019465 49 KKCAVVGNSGDLLKTEFGEEIDSHDAVIRDNEAPVNQRYAKHVGLKRDFRLVVRGAARNMVAI----LKG--STDEVLII 122 (340)
Q Consensus 49 ~~CAVVGNSGiL~gS~cG~EIDs~D~VIR~N~APv~~gye~DVGsKTt~~~~n~~~~~~~~~~----L~~--~~~~~l~i 122 (340)
++|+||||||+|.++. |.+||+.|+|||||.+|....| +||++|++++++++........ ... .....++.
T Consensus 2 ~~c~IvGNGpSL~~~~-~~~i~~~~~vi~vN~~~~~~~~--~~g~~~~yv~~dp~~~~~~~~~l~~~~~~~~~~~~~i~~ 78 (291)
T 2wqq_A 2 KKVIIAGNGPSLKEID-YSRLPNDFDVFRCNQFYFEDKY--YLGKKCKAVFYNPSLFFEQYYTLKHLIQNQEYETELIMC 78 (291)
T ss_dssp CEEEEECCSGGGGCCC-GGGCCSSEEEEEETTGGGCSEE--TTCSEEEEEEECGGGHHHHHHHHHHHHHTTSCEEEEEEE
T ss_pred CcEEEEeCchhhccCc-hhhhccCCeEEEEcCccccccc--ccccCccEEEEchHHHHHHHHHHHHHHhccccccceeee
Confidence 5899999999999997 9999999999999999985556 5999999999999876432221 121 11122333
Q ss_pred eccch--h---hHHHHHhhc-----CCcceee--hhhhh--------ccCCCCcHHHHHHHHHhc-CCeEEEeee-----
Q 019465 123 KSVTH--K---DFNAMIKSI-----PNPVYLF--QGIVL--------RRGAKGTGMKSIELALSM-CDIVDIYGF----- 176 (340)
Q Consensus 123 k~~~~--~---d~~~~~k~i-----~nP~~l~--~~~~~--------r~~~pSTGll~i~lAL~l-CDeV~lYGF----- 176 (340)
..... . .+...++.. ..+.++. ...|. ...+||||++|+.+|+.+ |+||+||||
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~l~~l~~~~~~~~~~~~~~~~r~stGl~~lslA~~lGckeIyLyGfD~~~~ 158 (291)
T 2wqq_A 79 SNYNQAHLENENFVKTFYDYFPDAHLGYDFFKQLKDFNAYFKFHEIQFNQRITSGVYMCAVAIALGYKEIYLSGIDFYQN 158 (291)
T ss_dssp CCCSCTTTSCHHHHHTHHHHSTTCEETHHHHTTCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTCCEEEEESCCCC--
T ss_pred eeccchhhHHHHHHHHHHhhcCceeccHhhhhhHHHHhhhhhccccccccCccHHHHHHHHHHHcCCCEEEEEeecCCCC
Confidence 33211 1 111111111 1111111 11111 234799999999999999 999999999
Q ss_pred ---eeCCCC-----CccccccCCC--CCCCCchhHHHHHHHHHhcCcEEEEc
Q 019465 177 ---TVDPGY-----TEWTRYFSTP--RKGHNPLQGRAYYQLLECLGVIRIHS 218 (340)
Q Consensus 177 ---~pd~~~-----~~~~HYYd~~--~~~H~~~~E~~~~q~Lh~~GvIrlh~ 218 (340)
||+... ...+|||++. ...|.|+.|++.++.||++|.|+++.
T Consensus 159 ~~~~~y~~~~~~~~~i~~hy~d~~~~~~~H~mp~ef~al~~Lh~~g~v~vyn 210 (291)
T 2wqq_A 159 GSSYAFDTKQKNLLKLAPNFKNDNSHYIGHSKNTDIKALEFLEKTYKIKLYC 210 (291)
T ss_dssp ---CCSCCCCHHHHHHCGGGC-------CCCHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCcCcCCccccccCCCccccccCCCCCcCCHHHHHHHHHHHHhcCeeEEE
Confidence 654322 2348999875 35799999999999999999888773
No 5
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=14.41 E-value=1.1e+02 Score=22.45 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCcEEEE
Q 019465 202 RAYYQLLECLGVIRIH 217 (340)
Q Consensus 202 ~~~~q~Lh~~GvIrlh 217 (340)
..++++|.++|+|++-
T Consensus 43 ~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 43 VKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHCCCeecc
Confidence 4668888999999874
No 6
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=11.76 E-value=93 Score=25.00 Aligned_cols=16 Identities=25% Similarity=0.433 Sum_probs=13.6
Q ss_pred CCcceEEEEcCCCCCC
Q 019465 46 RQFKKCAVVGNSGDLL 61 (340)
Q Consensus 46 ~~c~~CAVVGNSGiL~ 61 (340)
..+.+|||||+..-+.
T Consensus 83 ~~~~RiAvV~d~~W~~ 98 (127)
T 2ook_A 83 SEFERVAILGNKDWQE 98 (127)
T ss_dssp CCEEEEEEECCSSCCT
T ss_pred hcCCEEEEEcChHHHH
Confidence 5699999999998664
No 7
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=9.60 E-value=1.7e+02 Score=22.04 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=17.9
Q ss_pred HHHHHHhhhccceeeeecCCCCCC
Q 019465 303 KEAQDHYFQMEGVSLYKMDGNRLD 326 (340)
Q Consensus 303 ~~a~~h~~~~~~~~~y~~~~~~~~ 326 (340)
|+-...-+..-|+--|.+|||.+.
T Consensus 20 kemirqarkfagtvtytldgndle 43 (85)
T 2kl8_A 20 KEMIRQARKFAGTVTYTLDGNDLE 43 (85)
T ss_dssp HHHHHHHTTTTCEEEEEECSSCEE
T ss_pred HHHHHHHHhhcceEEEEecCCeeE
Confidence 444445566789999999999875
No 8
>3bqo_B TERF1-interacting nuclear factor 2; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens}
Probab=9.56 E-value=80 Score=19.47 Aligned_cols=7 Identities=43% Similarity=0.425 Sum_probs=5.8
Q ss_pred ecCCCcc
Q 019465 77 RDNEAPV 83 (340)
Q Consensus 77 R~N~APv 83 (340)
+||+||+
T Consensus 2 ~FNLAPL 8 (26)
T 3bqo_B 2 HFNLAPL 8 (26)
T ss_pred ccccccc
Confidence 6899997
No 9
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=9.55 E-value=92 Score=25.01 Aligned_cols=14 Identities=29% Similarity=0.686 Sum_probs=11.8
Q ss_pred CCcceEEEEcCCCC
Q 019465 46 RQFKKCAVVGNSGD 59 (340)
Q Consensus 46 ~~c~~CAVVGNSGi 59 (340)
..+.+|||||+..-
T Consensus 83 ~~~~RiAvV~d~~W 96 (126)
T 2q3l_A 83 KEFKRVAIIGQGEL 96 (126)
T ss_dssp GGEEEEEEECCSHH
T ss_pred hcCCEEEEEcChHH
Confidence 56999999999863
No 10
>2v40_A Adenylosuccinate synthetase isozyme 2; ligase, purine biosynthesis, metal- binding, purine metabolism, nucleotide-binding, GDP, ADSS2, magnesium; HET: GDP; 1.9A {Homo sapiens} PDB: 1iwe_A* 1j4b_A 1lny_A* 1lon_A* 1loo_A* 1mez_A* 1mf0_A* 1mf1_A* 2dgn_A*
Probab=6.59 E-value=1.6e+02 Score=29.53 Aligned_cols=62 Identities=23% Similarity=0.245 Sum_probs=34.8
Q ss_pred ccCCCCCCCCCCCcceEEEEcCCCCCCCCcCCcccc----ccceeeecCCCcccccccCCC-CcCceeEeecc
Q 019465 35 LILPAKPPFRPRQFKKCAVVGNSGDLLKTEFGEEID----SHDAVIRDNEAPVNQRYAKHV-GLKRDFRLVVR 102 (340)
Q Consensus 35 ~~lP~~sP~~~~~c~~CAVVGNSGiL~gS~cG~EID----s~D~VIR~N~APv~~gye~DV-GsKTt~~~~n~ 102 (340)
.-+|+..|+..+ ..+|||-.-- ..+-|+-+| .+|+|.|+|..+- .|++=-+ |.|..|+.+-.
T Consensus 21 ~~~~~~~~~~~~---v~vVvG~QWG--DEGKGKivD~La~~~dvVvR~qGG~N-AGHTVv~~g~k~~lhliPS 87 (459)
T 2v40_A 21 QSMPRARPGGNR---VTVVLGAQWG--DEGKGKVVDLLAQDADIVCRCQGGNN-AGHTVVVDSVEYDFHLLPS 87 (459)
T ss_dssp --------CCCC---EEEEEESSSS--CSSHHHHHHHHHTTCSEEEECSBCSC-CCEEEEETTEEEEESSSCG
T ss_pred cCCCccCCCCee---EEEEEecCcC--CCCCceEEEEeccCCCEEeecCccCC-CCcEEEECCEEEEEEccCc
Confidence 336666677632 2378876542 334566565 6999999998874 7765433 66778876643
Done!