Query 019466
Match_columns 340
No_of_seqs 127 out of 1280
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 16:32:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019466.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019466hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vj8_A Squalene synthase; farn 100.0 2.3E-61 8E-66 464.2 28.1 293 31-326 7-302 (343)
2 4hd1_A Squalene synthase HPNC; 100.0 4.1E-60 1.4E-64 447.5 24.9 281 29-332 7-289 (294)
3 3acx_A Dehydrosqualene synthas 100.0 4.2E-58 1.4E-62 433.6 25.7 272 33-328 10-289 (293)
4 3rmg_A Octaprenyl-diphosphate 96.0 0.27 9.1E-06 46.4 16.4 202 64-280 74-308 (334)
5 3tc1_A Octaprenyl pyrophosphat 95.8 0.4 1.4E-05 44.8 16.7 199 62-280 62-293 (315)
6 1v4e_A Octoprenyl-diphosphate 95.8 0.2 6.7E-06 46.5 14.2 92 137-231 129-233 (299)
7 2q80_A Geranylgeranyl pyrophos 95.7 1 3.6E-05 41.6 18.8 137 140-280 116-282 (301)
8 3lmd_A Geranylgeranyl pyrophos 95.6 0.22 7.4E-06 47.5 14.3 139 138-280 163-334 (360)
9 3mzv_A Decaprenyl diphosphate 95.4 0.68 2.3E-05 43.7 16.9 139 138-280 142-315 (341)
10 3nf2_A Putative polyprenyl syn 95.2 0.5 1.7E-05 44.8 15.0 138 138-279 146-324 (352)
11 3aqb_B Component B of hexapren 94.9 1.1 3.8E-05 41.8 16.4 91 138-231 133-241 (325)
12 3apz_A Geranyl diphosphate syn 94.7 1.5 5.1E-05 41.3 17.1 142 136-280 154-324 (348)
13 3pko_A Geranylgeranyl pyrophos 94.6 0.64 2.2E-05 43.7 14.1 137 139-280 147-316 (334)
14 2ihi_A Pyrophosphate synthase; 94.4 2.1 7.2E-05 41.1 17.4 137 138-280 181-378 (395)
15 2e8v_A Geranylgeranyl pyrophos 94.3 1.8 6.1E-05 40.7 16.4 89 140-231 136-244 (340)
16 3oyr_A Trans-isoprenyl diphosp 94.2 2.6 8.8E-05 39.8 17.3 141 137-280 153-327 (345)
17 1rtr_A Geranyltranstransferase 94.2 1.8 6.2E-05 40.0 16.0 121 145-279 148-274 (301)
18 2ftz_A Geranyltranstransferase 94.0 1.6 5.4E-05 40.0 15.1 126 138-279 137-267 (284)
19 1wmw_A Geranylgeranyl diphosph 94.0 1.5 5.2E-05 40.9 15.4 92 137-231 132-241 (330)
20 3uca_A Geranyltranstransferase 93.9 1.4 5E-05 41.1 14.8 110 146-280 181-308 (324)
21 1wy0_A Geranylgeranyl pyrophos 93.9 1.4 4.9E-05 41.3 14.9 91 139-232 141-249 (342)
22 4f62_A Geranyltranstransferase 93.6 0.47 1.6E-05 44.4 10.9 110 146-280 152-279 (317)
23 2h8o_A Geranyltranstransferase 93.5 1.5 5.2E-05 41.2 14.3 110 145-279 192-318 (335)
24 3lom_A Geranyltranstransferase 93.3 0.98 3.3E-05 42.1 12.4 109 146-280 159-287 (313)
25 2her_A Fragment, farnesyl pyro 93.1 1.9 6.3E-05 41.1 14.3 138 139-280 172-338 (368)
26 3p8l_A Geranyltranstransferase 92.9 0.95 3.3E-05 41.9 11.6 108 146-278 157-281 (302)
27 1rqj_A Geranyltranstransferase 92.3 1.6 5.6E-05 40.2 12.5 110 145-279 152-279 (299)
28 4dhd_A Polyprenyl synthetase; 92.3 1.1 3.8E-05 42.5 11.5 139 138-280 135-321 (358)
29 3ipi_A Geranyltranstransferase 92.1 2.3 7.7E-05 39.2 13.0 124 140-280 132-266 (295)
30 3p8r_A Geranyltranstransferase 91.9 0.89 3E-05 42.1 10.1 121 146-280 159-286 (302)
31 3ts7_A Geranyltranstransferase 91.8 0.66 2.2E-05 43.5 9.1 110 146-280 159-286 (324)
32 3m0g_A Farnesyl diphosphate sy 91.6 0.47 1.6E-05 43.9 7.9 111 145-280 147-273 (297)
33 3pde_A Farnesyl-diphosphate sy 91.6 2.8 9.7E-05 38.8 13.1 108 146-278 156-280 (309)
34 3lsn_A Geranyltranstransferase 91.5 0.73 2.5E-05 42.8 9.1 109 147-280 154-280 (304)
35 1yhl_A Farnesyl pyrophosphate 90.7 4.4 0.00015 38.2 13.9 92 137-231 153-279 (362)
36 2azj_A Geranylgeranyl pyrophos 90.3 11 0.00036 34.6 17.2 117 138-279 138-261 (289)
37 2qis_A Farnesyl pyrophosphate 90.2 3.9 0.00013 38.9 13.0 92 137-231 178-293 (374)
38 1uby_A FPS, farnesyl diphospha 88.9 4.5 0.00016 38.3 12.4 92 137-231 171-286 (367)
39 3dyh_A Farnesyl pyrophosphate 87.8 7.3 0.00025 37.2 13.1 89 138-231 182-307 (390)
40 3lk5_A Geranylgeranyl pyrophos 87.7 3.7 0.00013 39.2 11.0 135 142-279 182-353 (380)
41 2q58_A Fragment, farnesyl pyro 84.7 18 0.00061 34.1 14.0 84 144-230 177-278 (368)
42 3npk_A Geranyltranstransferase 79.0 19 0.00063 33.0 11.3 120 145-280 145-270 (291)
43 3kb9_A EPI-isozizaene synthase 78.5 44 0.0015 31.3 20.8 203 52-272 92-313 (382)
44 3llw_A Geranyltranstransferase 77.4 19 0.00066 33.2 11.0 117 145-277 159-282 (311)
45 3v1v_A 2-MIB synthase, 2-methy 69.7 81 0.0028 30.3 17.7 184 53-242 162-370 (433)
46 3kra_B Geranyl diphosphate syn 63.4 18 0.0006 32.7 7.3 64 146-209 150-219 (274)
47 2j1p_A Geranylgeranyl pyrophos 60.8 33 0.0011 31.2 8.7 106 146-279 161-275 (293)
48 3mav_A Farnesyl pyrophosphate 57.3 1.3E+02 0.0044 28.4 14.9 34 195-231 272-315 (395)
49 4fp4_A Polyprenyl synthetase; 50.7 56 0.0019 29.7 8.3 72 138-215 136-210 (285)
50 1yyq_A Trichodiene synthase; t 47.3 1.8E+02 0.0063 27.2 18.1 167 57-242 80-257 (374)
51 3bny_A Aristolochene synthase; 45.0 1.7E+02 0.0058 26.1 19.0 193 52-269 62-276 (320)
52 1ps1_A Pentalenene synthase; a 43.3 1.8E+02 0.0063 26.0 21.4 201 52-272 52-271 (337)
53 3qkc_B Geranyl diphosphate syn 42.8 31 0.0011 31.1 5.3 64 146-209 152-220 (273)
54 1yfb_A Transition state regula 40.0 12 0.0004 25.8 1.5 21 223-243 21-41 (59)
55 1n1b_A (+)-bornyl diphosphate 38.5 3E+02 0.01 27.2 21.9 185 63-269 288-496 (549)
56 1di1_A Aristolochene synthase; 38.3 2E+02 0.007 25.1 20.2 192 53-272 49-265 (300)
57 2l66_A SSO7C4, transcriptional 32.7 21 0.00071 23.6 1.8 21 223-243 11-31 (53)
No 1
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=100.00 E-value=2.3e-61 Score=464.23 Aligned_cols=293 Identities=53% Similarity=0.905 Sum_probs=269.7
Q ss_pred CCCchhHHHHHHHHhhcCCCHHHHHHhcChhhhhHHHHHHHHHhhhhhccCCCCCChhhhHHHHHHHHHHHccccccccc
Q 019466 31 IPPEPHWAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSC 110 (340)
Q Consensus 31 ~~l~~~~~~c~~ilr~~s~sfyla~~lLP~~~R~av~alYAf~R~~DdI~D~~~~~~~~~~~~L~~w~~~l~~~~~~~~~ 110 (340)
-++++++++|.++++++|+|||+++++||++.|++++++|+|||.+|||+|+.+.++++|..+|++|++.+....|.+..
T Consensus 7 ~~l~~~~~~C~~~l~~~srsF~la~~lLp~~~R~av~alYaf~R~aDdI~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~ 86 (343)
T 3vj8_A 7 DSLSSSLKTCYKYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFME 86 (343)
T ss_dssp -CCCHHHHHHHHHHHHHHGGGHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCTTCCCCC
T ss_pred ccchHHHHHHHHHHHhcCCcHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcchhhhcC
Confidence 36889999999999999999999999999999999999999999999999998878888999999999999876555653
Q ss_pred CCcchhHHHhhHHHHHHHHHhcChhHHHHHHHHHHhhhhHHHhhhhhhcCCHHHHHHHHHhhhhHHHHHHHHHhcccCCC
Q 019466 111 GTKEYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTE 190 (340)
Q Consensus 111 g~~~~~~l~~~l~~v~~~~~~~~~~~~~li~~~~~~~~~g~~~Dl~~~~~t~~eL~~Yc~~vAg~VG~l~~~il~~~~~~ 190 (340)
+++.+.+++..++.++..|..++..++++|.+++.+|.+||++|+.++|+|++||+.|||+|||+||+|+++|+|..+.+
T Consensus 87 ~~~~~~~ll~~~p~v~~~f~~l~~~~~~~i~~~~~~m~~gm~~dl~~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~ 166 (343)
T 3vj8_A 87 SKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFE 166 (343)
T ss_dssp CCSTTTHHHHTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSS
T ss_pred CChhhHHHHhcCcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCc
Confidence 45566678888888999999999999999999999999999999998999999999999999999999999999974321
Q ss_pred CC---ChhHHHHHHHHHHHHHHHHhchhhhhccCCCCcccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHH
Q 019466 191 DL---APDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHV 267 (340)
Q Consensus 191 ~~---~~~~~A~~lG~AlQltNiLRDi~eD~~~~~~GR~YLP~d~L~~~gv~~edl~~~~~~~~~~~~i~~~~~~a~~~l 267 (340)
++ ...+.|.++|.|+|+||||||++||+. +||||||.|+|.+||+++++|..++.+++++.++++++.+|+.||
T Consensus 167 ~~~~~~~~~~A~~lG~AlQltNilRDv~eD~~---~gR~YlP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~~ 243 (343)
T 3vj8_A 167 DPLVGEDTERANSMGLFLQKTNIIRDYLEDQQ---GGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHI 243 (343)
T ss_dssp CHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHH---TTCCCSCHHHHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTH
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhHHHHh---CCCeeCCHHHHHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 11 246899999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccccchhhhhhHHHHHHHHHHHhcCCCccccccccCHHHHHHHHHHHh
Q 019466 268 EDCLKYMSALRDHAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGMILILNMYFF 326 (340)
Q Consensus 268 ~~a~~~~~~lp~~~~~~~~~~p~~~a~~~l~~~~~~~dv~~~~v~~~r~~~~~~l~~~~ 326 (340)
.+|..++..+|..+.+.+|++|..++++++..++++++||++++++++++++|++|++.
T Consensus 244 ~~a~~~~~~L~~~~~~~~~~ip~~lA~~tL~~i~~~~~v~~~rvkisr~~~~~l~~ra~ 302 (343)
T 3vj8_A 244 PDVITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDAT 302 (343)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTTCGGGGTSCCCCCHHHHHHHHHHCS
T ss_pred HHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHhCCccccCCCcccHHHHHHHHHHhC
Confidence 99999999999886677999999999999999999999999999999999999999985
No 2
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=100.00 E-value=4.1e-60 Score=447.47 Aligned_cols=281 Identities=17% Similarity=0.222 Sum_probs=225.4
Q ss_pred cCCCCchhHHHHHHHHhhcCCCHHHHHHhcChhhhhHHHHHHHHHhhhhhccCCCCCChhhhHHHHHHHHHHHccccccc
Q 019466 29 KQIPPEPHWAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHF 108 (340)
Q Consensus 29 ~~~~l~~~~~~c~~ilr~~s~sfyla~~lLP~~~R~av~alYAf~R~~DdI~D~~~~~~~~~~~~L~~w~~~l~~~~~~~ 108 (340)
.+..++++|++|.++++++|+|||++++|||++.|+++++||+|||++|||+|+... .+..+|+||++.+.. .+
T Consensus 7 ~p~~l~~~y~~C~~i~~~~~~sF~~a~~~lp~~~R~~~~alYaf~R~~Ddi~D~~~~---~~~~~L~~~~~~l~~---~~ 80 (294)
T 4hd1_A 7 VPVELRGDFEVCRRLTRSHYENFSVVSLFVPRHLRPHFYSVYAFCRGVDDLGDEFAG---DRMAALDAYEEELRR---AF 80 (294)
T ss_dssp SCGGGHHHHHHHHHHHHHHCTTHHHHTTTCCTTTHHHHHHHHHHHHHHHHTSTTCCS---CHHHHHHHHHHHHHH---HH
T ss_pred CCHHHHHHHHHHHHHHHHhCCcHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccCCCh---hHHHHHHHHHHHHHH---Hh
Confidence 444688999999999999999999999999999999999999999999999998653 466799999999987 45
Q ss_pred ccCCcchhHHHhhHHHHHHHHHhcChhHHHHHHHHHHhhhhHHHhhhh-hhcCCHHHHHHHHHhhhhHHHHHHHHHhccc
Q 019466 109 SCGTKEYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFIC-KEVESIDDYDEYCYYVAGLVGLGLSKLFYAS 187 (340)
Q Consensus 109 ~~g~~~~~~l~~~l~~v~~~~~~~~~~~~~li~~~~~~~~~g~~~Dl~-~~~~t~~eL~~Yc~~vAg~VG~l~~~il~~~ 187 (340)
. |.+. +|++.+|..+++.|..+..++.++|+ ||++|+. ++|+|++||+.|||+|||+||+||++|+|.
T Consensus 81 ~-g~~~-~pv~~al~~~~~~~~l~~~~~~~li~--------g~~~Dl~~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~g~- 149 (294)
T 4hd1_A 81 A-GEAT-TPAFRALQFTIATCNLPMEPFLRLIE--------ANRRDQRKHTYDTWEDLRDYCRYSADPVGRLVLGIFGC- 149 (294)
T ss_dssp H-TCCC-SHHHHHHHHHHHHHTCCSHHHHHHHH--------HHHHHHHCSBCCSHHHHHHHHHHHTHHHHHHHHHHTTC-
T ss_pred c-CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHH--------HHHhccccCCCCCHHHHHHHHHhccchHHHHHHHHhCC-
Confidence 5 6655 57899999999999888888888887 9999997 789999999999999999999999999985
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHhchhhhhccCCCCcccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHH
Q 019466 188 GTEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHV 267 (340)
Q Consensus 188 ~~~~~~~~~~A~~lG~AlQltNiLRDi~eD~~~~~~GR~YLP~d~L~~~gv~~edl~~~~~~~~~~~~i~~~~~~a~~~l 267 (340)
.+....+.|.++|+|||+|||||||+||++ +||||||.|+|.+||++++++.++..+++++.++++++++|+.+|
T Consensus 150 --~~~~~~~~A~~lG~AlQltNilRDv~eD~~---~gR~YlP~~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~ 224 (294)
T 4hd1_A 150 --LDDERARLSDATCTALQVANHMQDIDRDLA---LGRIYVPRADLEQFGATLDDIRARRATDGVRRCIALEVDRAQALF 224 (294)
T ss_dssp --CSHHHHHHHHHHHHHHHHHHHHHTHHHHHH---TTCBCSCHHHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHhchhhhc---cCceeCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 334466899999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccccchhhhhhHHHHHHHHH-HHhcCCCccccccccCHHHHHHHHHHHhcccccc
Q 019466 268 EDCLKYMSALRDHAIFRFCAIPQIMAIGTLA-LCYNNIEVFRGVVKMRRGMILILNMYFFKGETRV 332 (340)
Q Consensus 268 ~~a~~~~~~lp~~~~~~~~~~p~~~a~~~l~-~~~~~~dv~~~~v~~~r~~~~~~l~~~~~~~~~~ 332 (340)
.+|+.++..+|++.. ....++..+...++. +..+++++|++|+++++++|++++++++.|-+|.
T Consensus 225 ~~a~~~~~~lp~~~r-~~~~~~~~~y~~il~~i~~~~~~~~~~R~~vs~~~Kl~l~~~al~~~~~~ 289 (294)
T 4hd1_A 225 DEGRRLESLVPPRLA-RQLKLYRLGGEAILAAIRRQGYNPFAGRPVVSGKQKLRIALSVLAGGAKG 289 (294)
T ss_dssp HHHGGGGGSSCHHHH-HHHHHHHHHHHHHHHHHHTTTTCCC-------------------------
T ss_pred HHHHHHHHhCCHHHH-HHHHHHHHHHHHHHHHHHhCCCCCCCCCCccCHHHHHHHHHHHHHHhhcc
Confidence 999999999998741 222333444445554 4457899999999999999999999999886654
No 3
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=100.00 E-value=4.2e-58 Score=433.62 Aligned_cols=272 Identities=19% Similarity=0.199 Sum_probs=243.6
Q ss_pred CchhHHHHHHHHhhcCCCHHHHHHhcChhhhhHHHHHHHHHhhhhhccCCCCCChhhhHHHHHHHHHHHcccccccccCC
Q 019466 33 PEPHWAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGT 112 (340)
Q Consensus 33 l~~~~~~c~~ilr~~s~sfyla~~lLP~~~R~av~alYAf~R~~DdI~D~~~~~~~~~~~~L~~w~~~l~~~~~~~~~g~ 112 (340)
+++++++|.++++++|+|||+++++||++.|++++++|+|||++|||+|+++.+.. |+||++.++. ++. |.
T Consensus 10 ~~~~~~~c~~~~~~~s~sF~~a~~~Lp~~~R~av~alYaf~R~~Ddi~D~~~~~~~-----L~~w~~~l~~---~~~-g~ 80 (293)
T 3acx_A 10 MDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQF-----LNQIKEDIQS---IEK-YP 80 (293)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHGGGGTSSTHH-----HHHHHHHHHH---HHH-CT
T ss_pred hHHHHHHHHHHHhccCCcHHHHHHhCCHHHHHHHHHHHHHHHHHhhHhccCCCHHH-----HHHHHHHHHH---HhC-CC
Confidence 56789999999999999999999999999999999999999999999999876542 9999999987 355 55
Q ss_pred c------chhHHHhhHHHHHHHHHhcChhHHHHHHHHHHhhhhHHHhhhh-hhcCCHHHHHHHHHhhhhHHHHHHHHHhc
Q 019466 113 K------EYKVLMDQFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFIC-KEVESIDDYDEYCYYVAGLVGLGLSKLFY 185 (340)
Q Consensus 113 ~------~~~~l~~~l~~v~~~~~~~~~~~~~li~~~~~~~~~g~~~Dl~-~~~~t~~eL~~Yc~~vAg~VG~l~~~il~ 185 (340)
+ +++|++.+|..+++.|..+..++.++|+ ||++|+. .+|+|++||+.|||+|||+||+|+++++|
T Consensus 81 ~~~~~~~~~~pv~~al~~~~~~~~l~~~~~~~li~--------g~~~Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g 152 (293)
T 3acx_A 81 YEYHHFQSDRRIMMALQHVAQHKNIAFQSFYNLID--------TVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPILS 152 (293)
T ss_dssp TSCCCCSSCHHHHHHHHHHHHHSCCCHHHHHHHHH--------HHHHHTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHC
T ss_pred CcccCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH--------HHHHHcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhC
Confidence 4 6778999999999998776677888886 9999997 68999999999999999999999999998
Q ss_pred ccCCCCCChhHHHHHHHHHHHHHHHHhchhhhhccCCCCcccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHH
Q 019466 186 ASGTEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALM 265 (340)
Q Consensus 186 ~~~~~~~~~~~~A~~lG~AlQltNiLRDi~eD~~~~~~GR~YLP~d~L~~~gv~~edl~~~~~~~~~~~~i~~~~~~a~~ 265 (340)
.. +.....+.|.++|.|+|+|||||||+||++ +||||||.|+|.+||+++++|.++..++++++++.+++++|+.
T Consensus 153 ~~--~~~~~~~~A~~lG~AlQltNilRDv~eD~~---~gR~YLP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~ 227 (293)
T 3acx_A 153 DH--ETHQTYDVARRLGESLQLINILRDVGEDFE---NERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEK 227 (293)
T ss_dssp SS--CCHHHHHHHHHHHHHHHHHHHHHCHHHHHH---TTCCCSCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred CC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCcEEeCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 52 113466899999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccccchhhhhhHHHHHHHHHHH-hcCCCccccccccCHHHHHHHHHHHhcc
Q 019466 266 HVEDCLKYMSALRDHAIFRFCAIPQIMAIGTLALC-YNNIEVFRGVVKMRRGMILILNMYFFKG 328 (340)
Q Consensus 266 ~l~~a~~~~~~lp~~~~~~~~~~p~~~a~~~l~~~-~~~~dv~~~~v~~~r~~~~~~l~~~~~~ 328 (340)
||.+|+.++..+|++. ..++..+..++..++..+ .++++ |+++++++++++++++++++.+
T Consensus 228 ~~~~a~~~~~~lp~~~-r~~~~~~~~~~~~iL~~i~~~~~~-~~~r~~v~~~~k~~~~~~a~~~ 289 (293)
T 3acx_A 228 DFRDVMDQIKVFSIEA-QPIIELAARIYIEILDEVRQANYT-LHERVFVEKRKKAKLFHEINSK 289 (293)
T ss_dssp HHHHHHHTGGGSCTTH-HHHHHHHHHHHHHHHHHHHHTTTC-SSSCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHhCCHHH-HHHHHHHHHHHHHHHHHHHhCCCC-CCCCceeCHHHHHHHHHHHHHh
Confidence 9999999999999875 344555677888888755 57999 9999999999999999999754
No 4
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=95.98 E-value=0.27 Score=46.36 Aligned_cols=202 Identities=12% Similarity=0.092 Sum_probs=108.1
Q ss_pred hHHHHHHHHHhhhhhccCCCCCChhhhHHHHHHHHHHHcccccccccCCcchhHHHhhHHHHHHHHHhcChhHHHHHHHH
Q 019466 64 NAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLELGKGYQDAIEDI 143 (340)
Q Consensus 64 ~av~alYAf~R~~DdI~D~~~~~~~~~~~~L~~w~~~l~~~~~~~~~g~~~~~~l~~~l~~v~~~~~~~~~~~~~li~~~ 143 (340)
.++-.+.++.-.-|||.|+..... .+-..-..|-.... +.. | +-.+..++..+.. .......+++.+.
T Consensus 74 ~aiEliH~asLiHDDI~D~s~~RR-G~pt~h~~~G~~~A----Il~-G---D~L~~~a~~~l~~---~~~~~~~~~~~~~ 141 (334)
T 3rmg_A 74 VSLELLHTASLVHDDVVDESTERR-GQLSVNAIFNNKVS----VLA-G---DYLLATSLVHAEQ---TNNYEIIRLVSSL 141 (334)
T ss_dssp HHHHHHHHHHHHHHHHHC----------CHHHHHHHHHH----HHH-H---HHHHHHHHHHHHH---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccCCCCCcC-CCccHHHhcChHHH----HHH-H---HHHHHHHHHHHHh---CCcHHHHHHHHHH
Confidence 356678888899999999854310 11011112222111 011 1 1122223332221 1112333444555
Q ss_pred HHhhhhHHHhhhhh---hcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHHHHHHHhch--
Q 019466 144 TKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQKTNIIRDY-- 214 (340)
Q Consensus 144 ~~~~~~g~~~Dl~~---~~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~~~~~---~~~~~A~~lG~AlQltNiLRDi-- 214 (340)
+..|..|-..|+.. .-.|.+++..-+++-.|++..+++.+-.. .|.+.. ....++.++|.|+|+.+=+-|+
T Consensus 142 ~~~~~~GQ~ldl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~ 221 (334)
T 3rmg_A 142 GQKLAEGELLQLSNVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYFD 221 (334)
T ss_dssp HHHHHHHHHHHHHCCCC--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 66777898888852 34688888877777777777776655322 222211 2346889999999999887776
Q ss_pred --------hhhhccCCCCcccccHHHHHhcCCCh--hhh---h-cccCCHH-HHH---------HHHHHHHHHHHHHHHH
Q 019466 215 --------LEDINEIPKCRMFWPREIWSKYVNKL--EDL---K-YEENSDK-AVQ---------CLNDMVTNALMHVEDC 270 (340)
Q Consensus 215 --------~eD~~~~~~GR~YLP~d~L~~~gv~~--edl---~-~~~~~~~-~~~---------~i~~~~~~a~~~l~~a 270 (340)
+.|+. .|.+-+|.=..-+..-+. +.| + .+..++. +.. .+......+..+..+|
T Consensus 222 ~~~~GK~~g~Dl~---egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~A 298 (334)
T 3rmg_A 222 SKKIGKPTGNDML---EGKLTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQYKKKA 298 (334)
T ss_dssp C------CCHHHH---TTCCCHHHHHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCchhhhh---cCchHHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 47888 799999974433322111 111 1 1222221 221 2334445577788888
Q ss_pred HHHHHhcccc
Q 019466 271 LKYMSALRDH 280 (340)
Q Consensus 271 ~~~~~~lp~~ 280 (340)
...+..+|..
T Consensus 299 ~~~L~~lp~~ 308 (334)
T 3rmg_A 299 FDLLAALPDS 308 (334)
T ss_dssp HHHHTTSCCC
T ss_pred HHHHHhCCCc
Confidence 8888888754
No 5
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=95.82 E-value=0.4 Score=44.80 Aligned_cols=199 Identities=14% Similarity=0.083 Sum_probs=103.0
Q ss_pred hhhHHHHHHHHHhhhhhccCCCCCChhhhHHHHHHHHHHHcccccccccCCcchhHHHhhHHHHHHHHHh---cChhHHH
Q 019466 62 LRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLE---LGKGYQD 138 (340)
Q Consensus 62 ~R~av~alYAf~R~~DdI~D~~~~~~~~~~~~L~~w~~~l~~~~~~~~~g~~~~~~l~~~l~~v~~~~~~---~~~~~~~ 138 (340)
.-.++-.+..+.-.-|||.|+... ++-.--+|+. | |++ -. +...-.-...+|.. ......+
T Consensus 62 ~A~aiEliH~asLiHDDi~D~s~~----RRG~pt~h~~--------~--G~~-~A-Il~GD~L~~~a~~~l~~~~~~~~~ 125 (315)
T 3tc1_A 62 LCTIVEMIQTASLLHDDVIDKATM----RRKLPSINAL--------F--GNF-NA-VMLGDVFYSKAFFELSKMGELIAQ 125 (315)
T ss_dssp HHHHHHHHHHHHHHHHHTC------------------------------CCS-HH-HHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCC----cCCCccHHHH--------h--Cch-HH-HHHHHHHHHHHHHHHHHCcHHHHH
Confidence 345677788899999999997542 1111111110 1 221 01 11111111122221 1222334
Q ss_pred HHHHHHHhhhhHHHhhhhh---hcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCCChhHHHHHHHHHHHHHHHHhch
Q 019466 139 AIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDLAPDSLSNSMGLFLQKTNIIRDY 214 (340)
Q Consensus 139 li~~~~~~~~~g~~~Dl~~---~~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~~~~~~~~~~A~~lG~AlQltNiLRDi 214 (340)
++.+.+..|+.|-..|+.. .-.|.+++..-+++-.|++..+.+.+-.. .|.+......++.++|.|+|+.+=+-|+
T Consensus 126 ~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQI~DD~ld~ 205 (315)
T 3tc1_A 126 ALSNAVLRLSRGEIEDVFVGECFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKDAKIYADFGLNFGMAFQIIDDLLDI 205 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4445556677788888852 35688887766666666666666655332 2322122347899999999999988886
Q ss_pred -----------hhhhccCCCCcccccHHHHHhcCCChhh---h---hcccCCHHHHHH---------HHHHHHHHHHHHH
Q 019466 215 -----------LEDINEIPKCRMFWPREIWSKYVNKLED---L---KYEENSDKAVQC---------LNDMVTNALMHVE 268 (340)
Q Consensus 215 -----------~eD~~~~~~GR~YLP~d~L~~~gv~~ed---l---~~~~~~~~~~~~---------i~~~~~~a~~~l~ 268 (340)
+.|+. .|.+-+|.=..-+. .++++ | +.....+.+..+ +......++.+..
T Consensus 206 ~~d~~~~GK~~g~Dl~---egK~T~p~i~al~~-~~~~~~~~L~~~l~~~~~~~~~~i~~li~~~ga~~~~~~~~~~~~~ 281 (315)
T 3tc1_A 206 TQDAKTLGKPNFSDFK---EGKTTLPYLLLYEK-LNQHDQGLLISYFKQDSHEIIEWTKEKFKQYGIIEETLKTAQVYSK 281 (315)
T ss_dssp SCCTTCCCCCCCCTGG---GTCCCHHHHHHHTT-SCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred cCCHHHhCCChhhHHH---cCChhHHHHHHHHh-CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 56888 79999997433332 23221 2 222211222222 2333344666777
Q ss_pred HHHHHHHhcccc
Q 019466 269 DCLKYMSALRDH 280 (340)
Q Consensus 269 ~a~~~~~~lp~~ 280 (340)
+|...+..+|..
T Consensus 282 ~A~~~L~~lp~s 293 (315)
T 3tc1_A 282 KALEAIKGENNL 293 (315)
T ss_dssp HHHHHTTTTCCH
T ss_pred HHHHHHHhCCCc
Confidence 777777766654
No 6
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=95.75 E-value=0.2 Score=46.50 Aligned_cols=92 Identities=14% Similarity=0.043 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCCChhHHHHHHHHHHHHHHHHhc
Q 019466 137 QDAIEDITKRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDLAPDSLSNSMGLFLQKTNIIRD 213 (340)
Q Consensus 137 ~~li~~~~~~~~~g~~~Dl~--~~~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~~~~~~~~~~A~~lG~AlQltNiLRD 213 (340)
.+.+.+.+..|+.|-..|+. ....|++++..-+++-.|++..+.+.+-.. .|.+......++.++|.|+|+.+=+-|
T Consensus 129 ~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQi~DD~lD 208 (299)
T 1v4e_A 129 RRAFLNVIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGEDLYNLGVTIGTIYQMFDDIMD 208 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555677789888885 223788888777777777776666654322 232222345789999999999987777
Q ss_pred h----------hhhhccCCCCcccccHH
Q 019466 214 Y----------LEDINEIPKCRMFWPRE 231 (340)
Q Consensus 214 i----------~eD~~~~~~GR~YLP~d 231 (340)
+ +.|+. .|.+-+|.=
T Consensus 209 ~~~d~~~GK~~g~Dl~---egK~T~p~l 233 (299)
T 1v4e_A 209 FAGMEKIGKDGFLDLK---NGVASFPLV 233 (299)
T ss_dssp HTTCCSCCTTSSCCCT---TTTCCHHHH
T ss_pred ccCccccCCCcchHhh---CCCchHHHH
Confidence 5 56677 688888863
No 7
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=95.67 E-value=1 Score=41.58 Aligned_cols=137 Identities=13% Similarity=0.070 Sum_probs=84.3
Q ss_pred HHHHHHhhhhHHHhhhhh--h--cCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCCChhHHHHHHHHHHHHHHHHhch
Q 019466 140 IEDITKRMGAGMAKFICK--E--VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDLAPDSLSNSMGLFLQKTNIIRDY 214 (340)
Q Consensus 140 i~~~~~~~~~g~~~Dl~~--~--~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~~~~~~~~~~A~~lG~AlQltNiLRDi 214 (340)
+.+.+.+|..|-..|+.. . ..|++++..-+++-.|+...+.+.+-.. .+.+ .....++.++|.|+|+.+=+-|+
T Consensus 116 ~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~~~-~~l~~~g~~lG~aFQi~DD~ld~ 194 (301)
T 2q80_A 116 FTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYK-EDLKPLLNTLGLFFQIRDDYANL 194 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC-SCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCCCh-HHHHHHHHHHHHHHHHHHHHhhh
Confidence 334555677788888852 2 4688888888877777777777666433 2222 34568999999999999776665
Q ss_pred -----------hhhhccCCCCcccccHHHHHhcCCChhhh---h-cccCCHHHHH-H---------HHHHHHHHHHHHHH
Q 019466 215 -----------LEDINEIPKCRMFWPREIWSKYVNKLEDL---K-YEENSDKAVQ-C---------LNDMVTNALMHVED 269 (340)
Q Consensus 215 -----------~eD~~~~~~GR~YLP~d~L~~~gv~~edl---~-~~~~~~~~~~-~---------i~~~~~~a~~~l~~ 269 (340)
+.|+. .|.+-+|.=..-+.+-....+ + .+..++.... + +......++.+..+
T Consensus 195 ~~~~~~~GK~~g~Dl~---egK~T~p~i~al~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~ 271 (301)
T 2q80_A 195 HSKEYSENKSFCEDLT---EGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAK 271 (301)
T ss_dssp HCC------CTTHHHH---HTCCCHHHHHHHHHSTTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred cCChhhhCCCccchhh---cCCcHHHHHHHHHcCccchHHHHHHhcCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 47887 699999974433332111112 1 1222333332 1 22334456777777
Q ss_pred HHHHHHhcccc
Q 019466 270 CLKYMSALRDH 280 (340)
Q Consensus 270 a~~~~~~lp~~ 280 (340)
|...+..+|..
T Consensus 272 A~~~L~~l~~~ 282 (301)
T 2q80_A 272 AYKQIDARGGN 282 (301)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHcCCCC
Confidence 77777777654
No 8
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=95.64 E-value=0.22 Score=47.50 Aligned_cols=139 Identities=12% Similarity=0.092 Sum_probs=84.5
Q ss_pred HHHHHHHHhhhhHHHhhhhh--hcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHHHHHHH
Q 019466 138 DAIEDITKRMGAGMAKFICK--EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQKTNII 211 (340)
Q Consensus 138 ~li~~~~~~~~~g~~~Dl~~--~~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~~~~~---~~~~~A~~lG~AlQltNiL 211 (340)
+++.+.+..|+.|-..|+.. ...|++++..-+++-.|++..+.+.+-.. .|.+.. ....++.++|.|+|+.|=+
T Consensus 163 ~~~~~~~~~~~~GQ~ldl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDi 242 (360)
T 3lmd_A 163 AHFAETFGELVTGQMRETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDI 242 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556777898888852 23677777766666667776666654322 222211 2346889999999999877
Q ss_pred hch-----------hhhhccCCCCcccccHHHHHhcCCCh--hhh---hcc-cCCH-HHHHH---------HHHHHHHHH
Q 019466 212 RDY-----------LEDINEIPKCRMFWPREIWSKYVNKL--EDL---KYE-ENSD-KAVQC---------LNDMVTNAL 264 (340)
Q Consensus 212 RDi-----------~eD~~~~~~GR~YLP~d~L~~~gv~~--edl---~~~-~~~~-~~~~~---------i~~~~~~a~ 264 (340)
-|+ +.|+. .|.+-+|.=..-+.+ ++ +.| +.+ ..++ .+..+ +......++
T Consensus 243 lD~~~d~~~~GK~~g~Dl~---egK~Tlp~l~al~~~-~~~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~~a~ 318 (360)
T 3lmd_A 243 IDIFSETHESGKTPGTDLR---EGVFTLPVLYALRED-TPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVY 318 (360)
T ss_dssp HHHHC--------CCHHHH---HTCCCHHHHHHHHCC-SHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHH
T ss_pred HHccCChhhhCCCchhHHh---cCCchHHHHHHHHcC-CchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 666 56887 699999975433332 11 112 221 1122 22222 344555678
Q ss_pred HHHHHHHHHHHhcccc
Q 019466 265 MHVEDCLKYMSALRDH 280 (340)
Q Consensus 265 ~~l~~a~~~~~~lp~~ 280 (340)
.+..+|...+..+|..
T Consensus 319 ~~~~~A~~~L~~lp~~ 334 (360)
T 3lmd_A 319 RYMDIANAELDRLPDS 334 (360)
T ss_dssp HHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHHhCCCc
Confidence 8888888888888764
No 9
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=95.44 E-value=0.68 Score=43.68 Aligned_cols=139 Identities=12% Similarity=0.101 Sum_probs=86.1
Q ss_pred HHHHHHHHhhhhHHHhhhhh---hcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHHHHHH
Q 019466 138 DAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQKTNI 210 (340)
Q Consensus 138 ~li~~~~~~~~~g~~~Dl~~---~~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~~~~~---~~~~~A~~lG~AlQltNi 210 (340)
+++.+....|+.|-..|+.. .-.|.+++..-+++-.|++..+.+.+-.. .|.+.. ....++.++|.|+|+.+=
T Consensus 142 ~~~~~~~~~~~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD 221 (341)
T 3mzv_A 142 EILANASAVIAEGEVLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDD 221 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556677788888852 35788888777777777776666655432 232211 234688999999999987
Q ss_pred Hhch-----------hhhhccCCCCcccccHHHHHhcCCChhh------hhc-cc-CCHHHHHH---------HHHHHHH
Q 019466 211 IRDY-----------LEDINEIPKCRMFWPREIWSKYVNKLED------LKY-EE-NSDKAVQC---------LNDMVTN 262 (340)
Q Consensus 211 LRDi-----------~eD~~~~~~GR~YLP~d~L~~~gv~~ed------l~~-~~-~~~~~~~~---------i~~~~~~ 262 (340)
+-|+ +.|+. .|.+-+|.=..-+.. ++++ ++. +. ..+.+..+ +......
T Consensus 222 ~ld~~~d~~~~GK~~g~Dl~---egK~Tlp~i~al~~~-~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a~~~ 297 (341)
T 3mzv_A 222 LLDYGGKSAEIGKNTGDDFR---ERKLTMPVIKAVALA-DEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLA 297 (341)
T ss_dssp HHHC----------CCHHHH---TTCCCHHHHHHHHTC-CHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHhccCChhhcCCCCCcccc---cCchhHHHHHHHHhC-CHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHH
Confidence 7775 57888 799999974333322 2221 111 11 12223222 3444556
Q ss_pred HHHHHHHHHHHHHhcccc
Q 019466 263 ALMHVEDCLKYMSALRDH 280 (340)
Q Consensus 263 a~~~l~~a~~~~~~lp~~ 280 (340)
++.+..+|...+..+|..
T Consensus 298 a~~~~~~A~~~L~~lp~~ 315 (341)
T 3mzv_A 298 AIGWTDTARKALAKLPDH 315 (341)
T ss_dssp HHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 788888888888888765
No 10
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=95.15 E-value=0.5 Score=44.78 Aligned_cols=138 Identities=12% Similarity=0.044 Sum_probs=83.5
Q ss_pred HHHHHHHHhhhhHHHhhhhh---hcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHHHHHH
Q 019466 138 DAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQKTNI 210 (340)
Q Consensus 138 ~li~~~~~~~~~g~~~Dl~~---~~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~~~~~---~~~~~A~~lG~AlQltNi 210 (340)
+++.+.+..|+.|-..|+.. .-.|.+++..-+++-.|++..+.+.+-.. .|.+.. ....++.++|.|+|+.+=
T Consensus 146 ~~~~~~~~~l~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD 225 (352)
T 3nf2_A 146 RRLTKASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDD 225 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555677788888852 35688888777777777777766655322 232211 234789999999999987
Q ss_pred Hhch-----------hhhhccCCCCcccccHHHHHhcCCChh--hh---hcc--------cCC-HHHHH---H------H
Q 019466 211 IRDY-----------LEDINEIPKCRMFWPREIWSKYVNKLE--DL---KYE--------ENS-DKAVQ---C------L 256 (340)
Q Consensus 211 LRDi-----------~eD~~~~~~GR~YLP~d~L~~~gv~~e--dl---~~~--------~~~-~~~~~---~------i 256 (340)
+-|+ +.|+. .|.+-+|.=..-+.+ +++ .| +.. ..+ +.+.. + +
T Consensus 226 ~ld~~gd~~~~GK~~g~Dl~---egK~Tlpvi~al~~~-~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~g~~ 301 (352)
T 3nf2_A 226 LLGIWGDPDATGKQTWSDLR---QRKKSLPVVAALAAG-GAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGR 301 (352)
T ss_dssp HHHHHCCHHHHSSCTTHHHH---TTCCCHHHHHHHHHC-SHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHH
T ss_pred HHhccCChhhhCCCcCcccc---cCCccHHHHHHHHhC-ChHHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHCCcH
Confidence 7665 58888 799999864333332 221 22 211 112 22222 1 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc
Q 019466 257 NDMVTNALMHVEDCLKYMSALRD 279 (340)
Q Consensus 257 ~~~~~~a~~~l~~a~~~~~~lp~ 279 (340)
......++.+..+|...+..+|.
T Consensus 302 ~~a~~~a~~~~~~A~~~L~~lp~ 324 (352)
T 3nf2_A 302 EWTADEARRQHTIAIEALDAVDM 324 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 33445567777788887877775
No 11
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=94.87 E-value=1.1 Score=41.84 Aligned_cols=91 Identities=14% Similarity=0.091 Sum_probs=63.0
Q ss_pred HHHHHHHHhhhhHHHhhhhh---hcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHHHHHH
Q 019466 138 DAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQKTNI 210 (340)
Q Consensus 138 ~li~~~~~~~~~g~~~Dl~~---~~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~~~~~---~~~~~A~~lG~AlQltNi 210 (340)
+.+.+....|..|-..|+.. ...|++++.+-+++-.|+...+.+.+-.. .|.+.. ....++.++|.|+|+.|=
T Consensus 133 ~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD 212 (325)
T 3aqb_B 133 QIFSKTILEVCFGEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDD 212 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556777788888852 25688888877777777777777665433 232211 134688999999999976
Q ss_pred Hhch-----------hhhhccCCCCcccccHH
Q 019466 211 IRDY-----------LEDINEIPKCRMFWPRE 231 (340)
Q Consensus 211 LRDi-----------~eD~~~~~~GR~YLP~d 231 (340)
+-|+ +.|+. .|.+-+|.=
T Consensus 213 ~ld~~~~~~~~GK~~g~Dl~---~gk~T~p~i 241 (325)
T 3aqb_B 213 ILDYTSDEATLGKPVGSDIR---NGHITYPLM 241 (325)
T ss_dssp HHHHHSCHHHHSSCTTHHHH---TTCCCHHHH
T ss_pred HHhccCChhhcCCccchHhh---CCCccHHHH
Confidence 6665 67888 799999874
No 12
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=94.72 E-value=1.5 Score=41.31 Aligned_cols=142 Identities=15% Similarity=0.134 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhhhhHHHhhhhh---hcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHHHH
Q 019466 136 YQDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQKT 208 (340)
Q Consensus 136 ~~~li~~~~~~~~~g~~~Dl~~---~~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~~~~~---~~~~~A~~lG~AlQlt 208 (340)
..+++.+.+..|+.|-..|+.. .-.|++++..-.++-.|++..+.+.+-.. .|.+.. ....++.++|.|+|+.
T Consensus 154 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~ 233 (348)
T 3apz_A 154 VVALLATAVEHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLI 233 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566778898888852 34577777766666666666666654332 232211 1246789999999999
Q ss_pred HHHhch-----------hhhhccCCCCcccccHHHHHhcCCChhhhhccc--CCHHHHH---------HHHHHHHHHHHH
Q 019466 209 NIIRDY-----------LEDINEIPKCRMFWPREIWSKYVNKLEDLKYEE--NSDKAVQ---------CLNDMVTNALMH 266 (340)
Q Consensus 209 NiLRDi-----------~eD~~~~~~GR~YLP~d~L~~~gv~~edl~~~~--~~~~~~~---------~i~~~~~~a~~~ 266 (340)
+=+-|+ +.|+. .|.+-+|.=..-+..-....++... ..+.+.. .+......++.+
T Consensus 234 DD~lD~~gd~~~~GK~~g~Dl~---egK~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~l~~a~~~~~~~ 310 (348)
T 3apz_A 234 DDILDFTGTSASLGKGSLSDIR---HGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEH 310 (348)
T ss_dssp HHHHHHHTTTTCTTCSCCHHHH---TTCCCHHHHHHHHHCTTHHHHHHTTTTCTHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHhhccCChhhcCCcchhhHh---CCChhHHHHHHHHcCHHHHHHHHhccCCHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 877775 46777 7899999743322221112222111 1122222 133334556677
Q ss_pred HHHHHHHHHhcccc
Q 019466 267 VEDCLKYMSALRDH 280 (340)
Q Consensus 267 l~~a~~~~~~lp~~ 280 (340)
..+|...+..+|..
T Consensus 311 ~~~A~~~L~~l~~~ 324 (348)
T 3apz_A 311 ANLAAAAIGSLPET 324 (348)
T ss_dssp HHHHHHHHTTSCCC
T ss_pred HHHHHHHHHcCCCC
Confidence 77777777777643
No 13
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=94.60 E-value=0.64 Score=43.71 Aligned_cols=137 Identities=15% Similarity=0.013 Sum_probs=79.2
Q ss_pred HHHHHHHhhhhHHHhhhhh---hcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHHHHHHH
Q 019466 139 AIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQKTNII 211 (340)
Q Consensus 139 li~~~~~~~~~g~~~Dl~~---~~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~~~~~---~~~~~A~~lG~AlQltNiL 211 (340)
.+.+.+..|+.|-..|+.. .-.|.++...-+++-.|++..+.+.+-.. .|.+.. ....++.++|.|+|+.+=+
T Consensus 147 ~~~~~~~~~~~Gq~~dl~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ 226 (334)
T 3pko_A 147 NHIDAMHRILQGELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDI 226 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555677787777742 35677776665566666666666554332 232211 2346889999999999866
Q ss_pred hch-----------hhhhccCCCCcccccHHHHHhcCCChhhh---h--cccCCH-HHHHH---------HHHHHHHHHH
Q 019466 212 RDY-----------LEDINEIPKCRMFWPREIWSKYVNKLEDL---K--YEENSD-KAVQC---------LNDMVTNALM 265 (340)
Q Consensus 212 RDi-----------~eD~~~~~~GR~YLP~d~L~~~gv~~edl---~--~~~~~~-~~~~~---------i~~~~~~a~~ 265 (340)
-|+ +.|+. .|.+-+|.=..-+.. ++++ + ++..++ .+..+ +......++.
T Consensus 227 ld~~~~~~~~GK~~g~Dl~---egK~Tlp~i~al~~~--~~~l~~~l~~~~~~~~~~~~~i~~li~~~ga~~~a~~~~~~ 301 (334)
T 3pko_A 227 LDYAGDPKRTQKPVLEDLR---SGVYSLPLLLSLSHA--PRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQD 301 (334)
T ss_dssp HHHCSCTTSCCHHHHHHHH---TTCCCHHHHHHGGGS--HHHHHHHHTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HhccCChhhcCCCCCCccc---cCchhHHHHHHHHhC--cHHHHHHHhcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 665 57888 799999964322221 1221 1 111222 12211 2233455677
Q ss_pred HHHHHHHHHHhcccc
Q 019466 266 HVEDCLKYMSALRDH 280 (340)
Q Consensus 266 ~l~~a~~~~~~lp~~ 280 (340)
+..+|...+..+|..
T Consensus 302 ~~~~A~~~L~~lp~~ 316 (334)
T 3pko_A 302 YTDRALTLIQQLPVG 316 (334)
T ss_dssp HHHHHHHHHTTSCSS
T ss_pred HHHHHHHHHHhCCCc
Confidence 777788777777754
No 14
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=94.40 E-value=2.1 Score=41.14 Aligned_cols=137 Identities=14% Similarity=0.069 Sum_probs=75.1
Q ss_pred HHHHHHHHhhhhHHHhhhh------------------hh---------cCCHHHHHHHHHhhhhHH-HHH---HHHHhcc
Q 019466 138 DAIEDITKRMGAGMAKFIC------------------KE---------VESIDDYDEYCYYVAGLV-GLG---LSKLFYA 186 (340)
Q Consensus 138 ~li~~~~~~~~~g~~~Dl~------------------~~---------~~t~~eL~~Yc~~vAg~V-G~l---~~~il~~ 186 (340)
+++.+....|+.|-..|+. .. -.|++++..-+++-.|.. ..+ +..+++
T Consensus 181 ~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~la- 259 (395)
T 2ihi_A 181 ATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLA- 259 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHhHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHc-
Confidence 4444555567778888882 01 346777766555555554 222 223333
Q ss_pred cCCCCCC-----hhHHHHHHHHHHHHHHHHhch----------hhhhccCCCCcccccHHHHHhcCCChhh---hhc--c
Q 019466 187 SGTEDLA-----PDSLSNSMGLFLQKTNIIRDY----------LEDINEIPKCRMFWPREIWSKYVNKLED---LKY--E 246 (340)
Q Consensus 187 ~~~~~~~-----~~~~A~~lG~AlQltNiLRDi----------~eD~~~~~~GR~YLP~d~L~~~gv~~ed---l~~--~ 246 (340)
|.+... ...++.++|.|+|+.+=+-|+ +.|+. .|.+-+|.=..-+ ..++++ |.. +
T Consensus 260 -g~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~---egK~T~p~l~al~-~~~~~~~~~L~~~~~ 334 (395)
T 2ihi_A 260 -GIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQ---NNKLTWPLIKTFE-LCSEPDKIKIVKNYG 334 (395)
T ss_dssp -TCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHSCC---------CTTT---TTCCCHHHHHHHH-HCCHHHHHHHHHHCC
T ss_pred -CCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCCCcchhh---cCCchHHHHHHHH-hCCHHHHHHHHHHhC
Confidence 222221 347889999999999877776 57888 7999888643222 223321 211 1
Q ss_pred cCC-HHHHH---------HHHHHHHHHHHHHHHHHHHHHhcccc
Q 019466 247 ENS-DKAVQ---------CLNDMVTNALMHVEDCLKYMSALRDH 280 (340)
Q Consensus 247 ~~~-~~~~~---------~i~~~~~~a~~~l~~a~~~~~~lp~~ 280 (340)
..+ +.+.. ++......++.++.+|...+..+|..
T Consensus 335 ~~~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~ 378 (395)
T 2ihi_A 335 KNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHE 378 (395)
T ss_dssp -CCHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHTTSCCH
T ss_pred CCCHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 112 11211 13333344666667777777777653
No 15
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=94.30 E-value=1.8 Score=40.71 Aligned_cols=89 Identities=16% Similarity=0.124 Sum_probs=60.1
Q ss_pred HHHHHHhhhhHHHhhhh-h-h----cCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC--CChhHHHHHHHHHHHHHHH
Q 019466 140 IEDITKRMGAGMAKFIC-K-E----VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED--LAPDSLSNSMGLFLQKTNI 210 (340)
Q Consensus 140 i~~~~~~~~~g~~~Dl~-~-~----~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~~~~--~~~~~~A~~lG~AlQltNi 210 (340)
+.+.+..|..|-..|+. . . ..|++++..-+++-.|++..+.+.+-.. .|.+. .....++.++|.|+|+.+=
T Consensus 136 ~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~l~~~g~~lG~aFQi~DD 215 (340)
T 2e8v_A 136 FNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSHHGHSLVPFINLLGIIYQIRDD 215 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556678888884 2 1 4588888888777777777776665433 22221 2345789999999999987
Q ss_pred Hhch-----------hhhhccCCCCcccccHH
Q 019466 211 IRDY-----------LEDINEIPKCRMFWPRE 231 (340)
Q Consensus 211 LRDi-----------~eD~~~~~~GR~YLP~d 231 (340)
+-|+ +.|+. .|.+-+|.=
T Consensus 216 ~ld~~~~~~~~GK~~g~Dl~---egK~Tlp~i 244 (340)
T 2e8v_A 216 YLNLKDFQMSSEKGFAEDIT---EGKLSFPIV 244 (340)
T ss_dssp HHHHHC-----CCCTTHHHH---TTCCCHHHH
T ss_pred HHhccCChhhhCCCchhhHh---cCCchHHHH
Confidence 7776 47888 789988864
No 16
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=94.21 E-value=2.6 Score=39.75 Aligned_cols=141 Identities=13% Similarity=0.058 Sum_probs=80.3
Q ss_pred HHHHHHHHHhhhhHHHhhhhh---hcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHHHHH
Q 019466 137 QDAIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQKTN 209 (340)
Q Consensus 137 ~~li~~~~~~~~~g~~~Dl~~---~~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~~~~~---~~~~~A~~lG~AlQltN 209 (340)
.+++.+.+..|+.|-..|+.. .-.|.+++..-.++-.|++..+++.+-.. .|.+.. ....++.++|.|+|+.+
T Consensus 153 ~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~D 232 (345)
T 3oyr_A 153 LEILARASRVIAEGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLAD 232 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556777888888852 35788888877777777777777665332 232211 23468899999999998
Q ss_pred HHhch-----------hhhhccCCCCcccccHHHHHhcCCChh-h-h---hc-cc----CCHHHHHH------HHHHHHH
Q 019466 210 IIRDY-----------LEDINEIPKCRMFWPREIWSKYVNKLE-D-L---KY-EE----NSDKAVQC------LNDMVTN 262 (340)
Q Consensus 210 iLRDi-----------~eD~~~~~~GR~YLP~d~L~~~gv~~e-d-l---~~-~~----~~~~~~~~------i~~~~~~ 262 (340)
=+-|+ +.|+. .|.+-+|.=..-+.+-+.+ + + +. +. .-..+.++ +......
T Consensus 233 D~lD~~~d~~~~GK~~g~Dl~---egK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~ 309 (345)
T 3oyr_A 233 DALDYGGATETLGKNAGDDFR---EGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDL 309 (345)
T ss_dssp HHTTC----------------------CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHhccCChhhcCCCccchhh---cCchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHH
Confidence 77775 46887 7999999744333332211 1 1 11 11 11222222 3445556
Q ss_pred HHHHHHHHHHHHHhcccc
Q 019466 263 ALMHVEDCLKYMSALRDH 280 (340)
Q Consensus 263 a~~~l~~a~~~~~~lp~~ 280 (340)
++.+..+|...+..+|..
T Consensus 310 a~~~~~~A~~~L~~lp~~ 327 (345)
T 3oyr_A 310 AADYADKAKAALAMFPAN 327 (345)
T ss_dssp HHHHHHHHHHTTTTSCSS
T ss_pred HHHHHHHHHHHHHhCCCc
Confidence 777888888877777754
No 17
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=94.19 E-value=1.8 Score=39.97 Aligned_cols=121 Identities=11% Similarity=0.068 Sum_probs=71.2
Q ss_pred HhhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHHHHHHHhchhhhh
Q 019466 145 KRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQKTNIIRDYLEDI 218 (340)
Q Consensus 145 ~~~~~g~~~Dl~--~~~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~~~~~---~~~~~A~~lG~AlQltNiLRDi~eD~ 218 (340)
..|+.|-..|+. ....|.+++..-+++-.|++..+.+.+-.. .|.+.. ....++.++|.|+|+.+=+-|+-.|-
T Consensus 148 ~~~~~GQ~~Dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~ 227 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDE 227 (301)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 456778888885 236788888888888777777776655322 232221 23468999999999998888874443
Q ss_pred ccCCCCcccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 019466 219 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 279 (340)
Q Consensus 219 ~~~~~GR~YLP~d~L~~~gv~~edl~~~~~~~~~~~~i~~~~~~a~~~l~~a~~~~~~lp~ 279 (340)
.. .|+-. | +|+..|+.+--+.-.++.-...++.+.++|...+..+|.
T Consensus 228 ~~--~GK~~---------g---~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~ 274 (301)
T 1rtr_A 228 AK--LGKKV---------G---SDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQIDE 274 (301)
T ss_dssp CC---------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCT
T ss_pred HH--hCCCc---------c---hHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 21 22210 0 233333333222223445566778888888888888874
No 18
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=94.04 E-value=1.6 Score=40.04 Aligned_cols=126 Identities=11% Similarity=0.031 Sum_probs=75.0
Q ss_pred HHHHHHHHhhhhHHHhhhh--hh--cCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCCChhHHHHHHHHHHHHHHHHh
Q 019466 138 DAIEDITKRMGAGMAKFIC--KE--VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDLAPDSLSNSMGLFLQKTNIIR 212 (340)
Q Consensus 138 ~li~~~~~~~~~g~~~Dl~--~~--~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~~~~~~~~~~A~~lG~AlQltNiLR 212 (340)
+.+.+....|+.|-..|+. .. ..|++++..-+++-.|++..+.+.+-.. .|.+......++.++|.|+|+.+=+-
T Consensus 137 ~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQI~DD~l 216 (284)
T 2ftz_A 137 EEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHTXMXLLGEXFGVAFQIYDDLX 216 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhhh
Confidence 3444455677788888885 23 5789999888888888777776665332 22222234578999999999999888
Q ss_pred chhhhhccCCCCcccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 019466 213 DYLEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 279 (340)
Q Consensus 213 Di~eD~~~~~~GR~YLP~d~L~~~gv~~edl~~~~~~~~~~~~i~~~~~~a~~~l~~a~~~~~~lp~ 279 (340)
|+-.|... .|.-. .+ |+. ..+--+.-.++.....++.+..+|...+..+|.
T Consensus 217 D~~~d~~~--~GK~~--g~----------Dl~--K~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~ 267 (284)
T 2ftz_A 217 DILGSFEK--VGKDL--GK----------DTE--XVTLVXXVGIQXAREMADXYYEEVLXGIESEGL 267 (284)
T ss_dssp HHHHHCCC--C-------------------------CHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhcCCHHh--hCCCc--ch----------hcc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 88776642 45411 01 111 111111112344455667777777777777763
No 19
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=94.04 E-value=1.5 Score=40.94 Aligned_cols=92 Identities=12% Similarity=-0.009 Sum_probs=63.2
Q ss_pred HHHHHHHHHhhhhHHHhhhhh-----hcCCHHHHHHHHHhhhhHH-HHHHHHHhcc-cCCCCC-ChhHHHHHHHHHHHHH
Q 019466 137 QDAIEDITKRMGAGMAKFICK-----EVESIDDYDEYCYYVAGLV-GLGLSKLFYA-SGTEDL-APDSLSNSMGLFLQKT 208 (340)
Q Consensus 137 ~~li~~~~~~~~~g~~~Dl~~-----~~~t~~eL~~Yc~~vAg~V-G~l~~~il~~-~~~~~~-~~~~~A~~lG~AlQlt 208 (340)
.+++.+....|+.|-..|+.. .-.|++++..-+++-.|++ ..+.+.+-.. .|.+.. ....++.++|.|+|+.
T Consensus 132 ~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~l~~~g~~lG~aFQi~ 211 (330)
T 1wmw_A 132 LLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAAYEEGGLRLGTAFQIV 211 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 344445556777788888854 3568888877777777777 6666655332 222221 1457899999999999
Q ss_pred HHHhch----------hhhhccCCCCcccccHH
Q 019466 209 NIIRDY----------LEDINEIPKCRMFWPRE 231 (340)
Q Consensus 209 NiLRDi----------~eD~~~~~~GR~YLP~d 231 (340)
|=+-|+ +.|+. .|.+-+|.=
T Consensus 212 DD~ld~~~d~~~GK~~g~Dl~---egK~T~p~i 241 (330)
T 1wmw_A 212 DDVLNLEGGEAYGKERAGDLY---EGKRTLILL 241 (330)
T ss_dssp HHHHHHSCSCCCSSSTTHHHH---HTCCCHHHH
T ss_pred HccCcccCCcccCCCcCchhh---CCCCCHHHH
Confidence 877775 67888 799999974
No 20
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=93.92 E-value=1.4 Score=41.13 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=67.1
Q ss_pred hhhhHHHhhhhh---hcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHHHHHHHhch----
Q 019466 146 RMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQKTNIIRDY---- 214 (340)
Q Consensus 146 ~~~~g~~~Dl~~---~~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~~~~~---~~~~~A~~lG~AlQltNiLRDi---- 214 (340)
.|+.|-..|+.. ...|.+++..-.++-.|++..+.+.+-.. .|.++. ....++.++|.|+|+.+=+-|+
T Consensus 181 ~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~ 260 (324)
T 3uca_A 181 GMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNA 260 (324)
T ss_dssp THHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHhHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 467788888852 25688888877766666666666654322 222211 2347889999999999888777
Q ss_pred -------hhhhccCCCCcccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 019466 215 -------LEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (340)
Q Consensus 215 -------~eD~~~~~~GR~YLP~d~L~~~gv~~edl~~~~~~~~~~~~i~~~~~~a~~~l~~a~~~~~~lp~~ 280 (340)
+.|+. .|.+-+|.= -.+..--..++.+..+|...+..+|..
T Consensus 261 ~~~GK~~g~Dl~---egK~T~p~l----------------------~al~~a~~~a~~~~~~A~~~L~~l~~~ 308 (324)
T 3uca_A 261 KDLGKNVHKDQE---SNKNNYITI----------------------FGLEECKKKCVNITEECIEILSSIKGN 308 (324)
T ss_dssp -------------------CHHHH----------------------HCHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred HHhCCCcchHhh---cCCccHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 45565 566666642 123444566777788888888888764
No 21
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=93.88 E-value=1.4 Score=41.33 Aligned_cols=91 Identities=18% Similarity=0.091 Sum_probs=62.0
Q ss_pred HHHHHHHhhhhHHHhhhhh---hcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHHHHHHH
Q 019466 139 AIEDITKRMGAGMAKFICK---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQKTNII 211 (340)
Q Consensus 139 li~~~~~~~~~g~~~Dl~~---~~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~~~~~---~~~~~A~~lG~AlQltNiL 211 (340)
++.+.+..|+.|-..|+.. ...|++++..-+++-.|++..+.+.+-.. .|.+.. ....++.++|.|+|+.|=+
T Consensus 141 ~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ 220 (342)
T 1wy0_A 141 VIVKASNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDV 220 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455677788888852 24588888887887777777776665332 232221 2347899999999999866
Q ss_pred hch-----------hhhhccCCCCcccccHHH
Q 019466 212 RDY-----------LEDINEIPKCRMFWPREI 232 (340)
Q Consensus 212 RDi-----------~eD~~~~~~GR~YLP~d~ 232 (340)
-|+ +.|+. .|.+-+|.=.
T Consensus 221 lD~~~d~~~~GK~~g~Dl~---egK~Tlp~i~ 249 (342)
T 1wy0_A 221 LDLIADEKKLGKPVGSDIR---KGKKTLIVAH 249 (342)
T ss_dssp HHHHSCHHHHTSCSCHHHH---HTCCCHHHHH
T ss_pred HhccCChhhhCCCchhHHh---CCCCcHHHHH
Confidence 665 47887 6899899743
No 22
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=93.63 E-value=0.47 Score=44.35 Aligned_cols=110 Identities=15% Similarity=0.192 Sum_probs=70.1
Q ss_pred hhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cC-CCC---CChhHHHHHHHHHHHHHHHHhch----
Q 019466 146 RMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SG-TED---LAPDSLSNSMGLFLQKTNIIRDY---- 214 (340)
Q Consensus 146 ~~~~g~~~Dl~--~~~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~-~~~---~~~~~~A~~lG~AlQltNiLRDi---- 214 (340)
.|+.|-..|+. ....|.+++..-.++-.|++..+.+.+-.. .| .+. .....++.++|.|+|+.+=+-|+
T Consensus 152 ~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~ 231 (317)
T 4f62_A 152 GMITGQMIDLSSENKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDT 231 (317)
T ss_dssp THHHHHHHHHHTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred hHHHhHHHHHhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 46678778885 345788888887766666666666654332 23 221 12346889999999999988887
Q ss_pred -------hhhhccCCCCcccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 019466 215 -------LEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (340)
Q Consensus 215 -------~eD~~~~~~GR~YLP~d~L~~~gv~~edl~~~~~~~~~~~~i~~~~~~a~~~l~~a~~~~~~lp~~ 280 (340)
+.|+. .|.+-+|. .-.++.--..++.+..+|...+..+|..
T Consensus 232 ~~~GK~~g~Dl~---egK~T~p~----------------------l~gle~a~~~a~~~~~~A~~~L~~l~~~ 279 (317)
T 4f62_A 232 ETLGKTQFSDAE---ANKATYPK----------------------LLGLDGAKALVVRLHEQAIAQISEFGDK 279 (317)
T ss_dssp ----------------CCCCHHH----------------------HHHHHHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HhhCCCcchHHh---cCCCcHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 44555 45555554 2234555667788888888888888754
No 23
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=93.54 E-value=1.5 Score=41.17 Aligned_cols=110 Identities=12% Similarity=0.016 Sum_probs=67.8
Q ss_pred HhhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHHHHHHHhch----
Q 019466 145 KRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQKTNIIRDY---- 214 (340)
Q Consensus 145 ~~~~~g~~~Dl~--~~~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~~~~~---~~~~~A~~lG~AlQltNiLRDi---- 214 (340)
..|+.|-..|+. ....|++++..-.++-.|++..+.+.+-.. .|.+.. ....++.++|.|+|+.+=+-|+
T Consensus 192 ~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~ 271 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADA 271 (335)
T ss_dssp TSHHHHHHHHHHHHHSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 456778888885 236788888888888777776666654322 232211 2347899999999999877776
Q ss_pred -------hhhhccCCCCcccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 019466 215 -------LEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 279 (340)
Q Consensus 215 -------~eD~~~~~~GR~YLP~d~L~~~gv~~edl~~~~~~~~~~~~i~~~~~~a~~~l~~a~~~~~~lp~ 279 (340)
+.|+. .|.+-+|.= -.++..-..++.+..+|...+..+|.
T Consensus 272 ~~~GK~~g~Dl~---egK~T~p~l----------------------~~le~a~~~a~~~~~~A~~~L~~l~~ 318 (335)
T 2h8o_A 272 ATMGKATGKDAA---RGKGTLVAL----------------------RGEAWAREKLQEQVAEASELLAPYGE 318 (335)
T ss_dssp -----------------CCCHHHH----------------------HCHHHHHHHHHHHHHHHHHHTGGGGG
T ss_pred HHhCCCcchHHh---cCCccHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 34555 566666642 12344455667777777777777764
No 24
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=93.25 E-value=0.98 Score=42.08 Aligned_cols=109 Identities=11% Similarity=0.108 Sum_probs=68.7
Q ss_pred hhhhHHHhhhhh--h-cCCHHHHHHHHHhhhhHHHHHHHHHhcc-cC--CCCC---ChhHHHHHHHHHHHHHHHHhch--
Q 019466 146 RMGAGMAKFICK--E-VESIDDYDEYCYYVAGLVGLGLSKLFYA-SG--TEDL---APDSLSNSMGLFLQKTNIIRDY-- 214 (340)
Q Consensus 146 ~~~~g~~~Dl~~--~-~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~--~~~~---~~~~~A~~lG~AlQltNiLRDi-- 214 (340)
.|+.|-..|+.. . ..|.+++..-.++-.|++..+.+.+ .. .| .+.. ....++.++|.|+|+.+=+-|+
T Consensus 159 ~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DDilD~~g 237 (313)
T 3lom_A 159 GMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYA 237 (313)
T ss_dssp THHHHHHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhHHHHHHccCCCCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 567788888852 2 6789998888777777766777766 43 23 2211 2346889999999999877776
Q ss_pred ---------hhhhccCCCCcccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 019466 215 ---------LEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (340)
Q Consensus 215 ---------~eD~~~~~~GR~YLP~d~L~~~gv~~edl~~~~~~~~~~~~i~~~~~~a~~~l~~a~~~~~~lp~~ 280 (340)
+.|+. .|++-+|.= -.+..-...++.+..+|...+..+|..
T Consensus 238 d~~~~GK~~g~Dl~---~gK~T~p~l----------------------~~l~~a~~~a~~~~~~A~~~L~~l~~~ 287 (313)
T 3lom_A 238 PTQILGKGRSSDQA---NQKTTFATL----------------------FNKQQLEEEIAVHYQIAMDSLRLFGSK 287 (313)
T ss_dssp C------------------CCCHHHH----------------------SCHHHHHHHHHHHHHHHHHTTTTTGGG
T ss_pred CHHhhCCCCcchhh---cCCccHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 44555 566666642 123444566777777777777777654
No 25
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=93.11 E-value=1.9 Score=41.13 Aligned_cols=138 Identities=14% Similarity=0.122 Sum_probs=76.0
Q ss_pred HHHHHHHhhhhHHHhhhhhh----cCCH-HHHHHHHHhhhhHH-HHHHHH---HhcccCCCC---CChhHHHHHHHHHHH
Q 019466 139 AIEDITKRMGAGMAKFICKE----VESI-DDYDEYCYYVAGLV-GLGLSK---LFYASGTED---LAPDSLSNSMGLFLQ 206 (340)
Q Consensus 139 li~~~~~~~~~g~~~Dl~~~----~~t~-~eL~~Yc~~vAg~V-G~l~~~---il~~~~~~~---~~~~~~A~~lG~AlQ 206 (340)
++.+....|+.|-..|+... -.+. +++..=+++=.|.. ..+.+. +++..+.+. .....++.++|.|+|
T Consensus 172 ~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~aFQ 251 (368)
T 2her_A 172 IYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQ 251 (368)
T ss_dssp HHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHH
Confidence 34444556777888888532 2344 44433333333443 222322 232211111 224578999999999
Q ss_pred HHHHHhch------hhhhccCCCCcccccHHHHHhcCCChhh---hhc--ccCCHHHHHH------HHHHHHHHHHHHHH
Q 019466 207 KTNIIRDY------LEDINEIPKCRMFWPREIWSKYVNKLED---LKY--EENSDKAVQC------LNDMVTNALMHVED 269 (340)
Q Consensus 207 ltNiLRDi------~eD~~~~~~GR~YLP~d~L~~~gv~~ed---l~~--~~~~~~~~~~------i~~~~~~a~~~l~~ 269 (340)
+.+=+-|+ +.|+. .|.+-+|.=..-+ ..++++ |.. +.....++++ +......++.++.+
T Consensus 252 I~DD~LD~~~~GK~g~Dl~---egK~T~pvi~al~-~a~~~~r~~L~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~ 327 (368)
T 2her_A 252 VHNDVSDYLFNDSNADDIC---RFKLTWPLQKSFE-IADEEMKLKISENYGKNSSLVKDCYNLLKINEHYLEYQRNALDY 327 (368)
T ss_dssp HHHHHHHHHSCCSSSCTTT---TTCCCHHHHSSTT-TCCHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCChHh---CCcccHHHHHHHH-hCCHHHHHHHHHHhCCcHHHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 99877776 68998 8999988632212 223322 111 1111444444 33344457778888
Q ss_pred HHHHHHhcccc
Q 019466 270 CLKYMSALRDH 280 (340)
Q Consensus 270 a~~~~~~lp~~ 280 (340)
|...+..+|..
T Consensus 328 A~~~L~~lp~~ 338 (368)
T 2her_A 328 LIKLVKDITDD 338 (368)
T ss_dssp HHHHHTTCSCH
T ss_pred HHHHHHhCCCc
Confidence 88888888764
No 26
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=92.86 E-value=0.95 Score=41.94 Aligned_cols=108 Identities=10% Similarity=0.011 Sum_probs=65.2
Q ss_pred hhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHHHHHHHhchh----
Q 019466 146 RMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQKTNIIRDYL---- 215 (340)
Q Consensus 146 ~~~~g~~~Dl~--~~~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~~~~~---~~~~~A~~lG~AlQltNiLRDi~---- 215 (340)
.|+.|-..|+. ....|.+++..-.++-.|++..+.+.+-.. .|.++. ....++.++|.|+|+.+=+-|+-
T Consensus 157 ~~~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~ 236 (302)
T 3p8l_A 157 GMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEA 236 (302)
T ss_dssp THHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 46678778875 235688888877766666666666654322 222211 23478999999999999888873
Q ss_pred -------hhhccCCCCcccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 019466 216 -------EDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALR 278 (340)
Q Consensus 216 -------eD~~~~~~GR~YLP~d~L~~~gv~~edl~~~~~~~~~~~~i~~~~~~a~~~l~~a~~~~~~lp 278 (340)
.|+. .|.+-+|. .-.++.--+.++.+..+|...+..+|
T Consensus 237 ~~GK~~g~Dl~---egK~T~p~----------------------l~~l~~a~~~~~~~~~~A~~~L~~~~ 281 (302)
T 3p8l_A 237 DLGKKVGRDEA---LNKSTYPA----------------------LLGIAGAKDALTHQLAEGSAVLEKIK 281 (302)
T ss_dssp -----------------CCHHH----------------------HHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCChhhHHh---cCCCcHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4554 45555553 22334444566667777777777775
No 27
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=92.34 E-value=1.6 Score=40.18 Aligned_cols=110 Identities=18% Similarity=0.135 Sum_probs=68.0
Q ss_pred HhhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHHhccc--CCCC---CChhHHHHHHHHHHHHHHHHhchh--
Q 019466 145 KRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYAS--GTED---LAPDSLSNSMGLFLQKTNIIRDYL-- 215 (340)
Q Consensus 145 ~~~~~g~~~Dl~--~~~~t~~eL~~Yc~~vAg~VG~l~~~il~~~--~~~~---~~~~~~A~~lG~AlQltNiLRDi~-- 215 (340)
..|+.|-..|+. ....|++++..-+++-.|++..+.+.+-..- |.+. .....++.++|.|+|+.+=+-|+-
T Consensus 152 ~~~~~GQ~~dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~ 231 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGD 231 (299)
T ss_dssp TTHHHHHHHHHHTTTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHhHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 356778888885 2356888888887776666666666543211 1111 123467999999999998777764
Q ss_pred ---------hhhccCCCCcccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 019466 216 ---------EDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 279 (340)
Q Consensus 216 ---------eD~~~~~~GR~YLP~d~L~~~gv~~edl~~~~~~~~~~~~i~~~~~~a~~~l~~a~~~~~~lp~ 279 (340)
.|+. .|.+-+|.= -.++.....++.+..+|...+..+|.
T Consensus 232 ~~~~GK~~g~Dl~---~gK~T~p~l----------------------~~l~~a~~~~~~~~~~A~~~L~~l~~ 279 (299)
T 1rqj_A 232 TATLGKRQGADQQ---LGKSTYPAL----------------------LGLEQARKKARDLIDDARQSLKQLAE 279 (299)
T ss_dssp HHHHSSCTTHHHH---HTCCCHHHH----------------------HCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCChhhHHH---cCCCcHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4555 455555532 11233345566666777777666764
No 28
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=92.29 E-value=1.1 Score=42.49 Aligned_cols=139 Identities=14% Similarity=0.083 Sum_probs=84.5
Q ss_pred HHHHHHHHhhhhHHHhhhhhh---------------cCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHH
Q 019466 138 DAIEDITKRMGAGMAKFICKE---------------VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLS 198 (340)
Q Consensus 138 ~li~~~~~~~~~g~~~Dl~~~---------------~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~~~~~---~~~~~A 198 (340)
+.+.+.+..|+.|-..|+... ..|.+++..-+++-.|++..+++.+-.. .|.+.. ....++
T Consensus 135 ~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g 214 (358)
T 4dhd_A 135 KEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFG 214 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 344445556777888887522 4588888777777777777766655332 232211 234788
Q ss_pred HHHHHHHHHHHHHhch-----------hhhhccCCCCcc-cccHHHHHhcCCChhh---h---h-cccCCH-HHHHH---
Q 019466 199 NSMGLFLQKTNIIRDY-----------LEDINEIPKCRM-FWPREIWSKYVNKLED---L---K-YEENSD-KAVQC--- 255 (340)
Q Consensus 199 ~~lG~AlQltNiLRDi-----------~eD~~~~~~GR~-YLP~d~L~~~gv~~ed---l---~-~~~~~~-~~~~~--- 255 (340)
.++|.|+|+.|=+-|+ +.|+. .|.+ -+|.=..-+.. ++++ | + ++..++ .+..+
T Consensus 215 ~~lG~aFQI~DD~lD~~gd~~~~GK~~g~Dl~---egK~~T~p~i~al~~~-~~~~~~~L~~~l~~~~~~~~~~~~i~~l 290 (358)
T 4dhd_A 215 MAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIK---EHKRGNAVVAVALSHL-GEGERRRLLEILAREVVEEADVREAVAL 290 (358)
T ss_dssp HHHHHHHHHHHHHHHHHC-------CTTHHHH---TTBSCSHHHHHHHHHS-CHHHHHHHHHHHHCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCChhhcCCCchhhHh---cCChhhHHHHHHHHhC-ChhhHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999766665 57888 7999 88864333322 2221 1 1 111122 22222
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHhcccc
Q 019466 256 ------LNDMVTNALMHVEDCLKYMSALRDH 280 (340)
Q Consensus 256 ------i~~~~~~a~~~l~~a~~~~~~lp~~ 280 (340)
+......++.+..+|...+..+|..
T Consensus 291 i~~~gai~~a~~~a~~~~~~A~~~L~~lp~~ 321 (358)
T 4dhd_A 291 LDSVGAREEALRLAARYREEAERHLAKIPNN 321 (358)
T ss_dssp HHTTTHHHHHHHHHHHHHHHHHHHHTTSSSC
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 2334556788888888888888754
No 29
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=92.06 E-value=2.3 Score=39.22 Aligned_cols=124 Identities=15% Similarity=0.119 Sum_probs=72.2
Q ss_pred HHHHHHhhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHHHHHHHhc
Q 019466 140 IEDITKRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQKTNIIRD 213 (340)
Q Consensus 140 i~~~~~~~~~g~~~Dl~--~~~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~~~~~---~~~~~A~~lG~AlQltNiLRD 213 (340)
+.+....|+.|-..|+. ....|.+++..-.++-.|++..+.+.+-.. .|.+.. ....++.++|.|+|+.+=+-|
T Consensus 132 ~~~~~~~~~~GQ~~dl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD 211 (295)
T 3ipi_A 132 FGKAGMDMAEGEVLDLKLEDESFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILE 211 (295)
T ss_dssp HHHHHHHHHHHHHHHHC-------CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444567778888875 234566777666777777776666654322 232221 234689999999999987777
Q ss_pred hh-----hhhccCCCCcccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 019466 214 YL-----EDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (340)
Q Consensus 214 i~-----eD~~~~~~GR~YLP~d~L~~~gv~~edl~~~~~~~~~~~~i~~~~~~a~~~l~~a~~~~~~lp~~ 280 (340)
+- .|.. .|.+-+|.=...+.+ . .+.++.-.+.++.+..+|...+..+|..
T Consensus 212 ~~~~~~gkd~~---~gk~Tlp~l~al~~~--~------------~~~le~a~~~a~~~~~~A~~~L~~lp~~ 266 (295)
T 3ipi_A 212 FLEVVEGKESK---FTSETLPHIYMKSTS--K------------EEALKKSIDCVKLHVAAAKETLETFREC 266 (295)
T ss_dssp HHHHHHC----------CCHHHHHTTTSC--H------------HHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred hcCCccCCCcc---cCcccHHHHHHHhcC--c------------hhHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 74 4566 688888863221211 1 1235666677888888888888888754
No 30
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=91.89 E-value=0.89 Score=42.12 Aligned_cols=121 Identities=17% Similarity=0.144 Sum_probs=70.0
Q ss_pred hhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cC-CCC---CChhHHHHHHHHHHHHHHHHhchhhhh
Q 019466 146 RMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SG-TED---LAPDSLSNSMGLFLQKTNIIRDYLEDI 218 (340)
Q Consensus 146 ~~~~g~~~Dl~--~~~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~-~~~---~~~~~~A~~lG~AlQltNiLRDi~eD~ 218 (340)
.|+.|-..|+. ....|.+++..-+++-.|++..+.+.+-.. .| .+. .....++.++|.|+|+.+=+-|+-.|-
T Consensus 159 ~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~ 238 (302)
T 3p8r_A 159 GMCLGQALDLAAENRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDT 238 (302)
T ss_dssp THHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHhHHHHHHccCCCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 56678778885 346788888877766666666666654322 12 111 123478999999999998777764333
Q ss_pred ccCCCCcccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 019466 219 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (340)
Q Consensus 219 ~~~~~GR~YLP~d~L~~~gv~~edl~~~~~~~~~~~~i~~~~~~a~~~l~~a~~~~~~lp~~ 280 (340)
.. .|+- .| +|+..|+.+=-+.-.+..--..++.+..+|...+..+|..
T Consensus 239 ~~--~GK~---------~g---~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~ 286 (302)
T 3p8r_A 239 ET--LGKP---------QG---SDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIPYN 286 (302)
T ss_dssp ----------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred HH--hCCC---------cc---hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 21 2220 01 2333333332232345566677888888888888888764
No 31
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=91.77 E-value=0.66 Score=43.49 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=70.8
Q ss_pred hhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cC-CCCC---ChhHHHHHHHHHHHHHHHHhchh---
Q 019466 146 RMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SG-TEDL---APDSLSNSMGLFLQKTNIIRDYL--- 215 (340)
Q Consensus 146 ~~~~g~~~Dl~--~~~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~-~~~~---~~~~~A~~lG~AlQltNiLRDi~--- 215 (340)
.|+.|-..|+. ....|.+++..-.++-.|++..+.+.+-.. .| .+.. ....++.++|.|+|+.+=+-|+-
T Consensus 159 ~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d~ 238 (324)
T 3ts7_A 159 GMVGGQAIDLASVGKKLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDT 238 (324)
T ss_dssp THHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHhHHHHHHccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 46778888885 236788998888877777777777665432 23 2211 23468899999999998777764
Q ss_pred --------hhhccCCCCcccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 019466 216 --------EDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (340)
Q Consensus 216 --------eD~~~~~~GR~YLP~d~L~~~gv~~edl~~~~~~~~~~~~i~~~~~~a~~~l~~a~~~~~~lp~~ 280 (340)
.|+. .|.+-+|.= -.++.-...++.+..+|...+..+|..
T Consensus 239 ~~~GK~~g~Dl~---egK~T~p~l----------------------~gle~a~~~a~~~~~~A~~~L~~l~~~ 286 (324)
T 3ts7_A 239 QTLGKTRGKDRD---HNKPNYPAL----------------------LGLSGAKEKAEEMHEAALESLAGFGPE 286 (324)
T ss_dssp -----------------CCCHHHH----------------------HCHHHHHHHHHHHHHHHHHTTTTCCGG
T ss_pred HHhCCCccchhh---cCCccHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 4555 456655542 224455566778888888887778764
No 32
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=91.64 E-value=0.47 Score=43.92 Aligned_cols=111 Identities=14% Similarity=0.018 Sum_probs=64.9
Q ss_pred HhhhhHHHhhhh-h---hcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCCChhHHHHHHHHHHHHHHHHhch-----
Q 019466 145 KRMGAGMAKFIC-K---EVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDLAPDSLSNSMGLFLQKTNIIRDY----- 214 (340)
Q Consensus 145 ~~~~~g~~~Dl~-~---~~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~~~~~~~~~~A~~lG~AlQltNiLRDi----- 214 (340)
..|+.|-..|+. . ...|.+++..-.++-.|++..+.+.+-.. .|.+......++.++|.|+|+.|=+-|+
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~ 226 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRGPLTAYATALGLAFQIADDILDVEGNEE 226 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCC-------
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 346678777875 2 35688888887777777776666654322 2322223457899999999999766555
Q ss_pred ------hhhhccCCCCcccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 019466 215 ------LEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (340)
Q Consensus 215 ------~eD~~~~~~GR~YLP~d~L~~~gv~~edl~~~~~~~~~~~~i~~~~~~a~~~l~~a~~~~~~lp~~ 280 (340)
+.|+. .|.+-+|.= +|+ ..--..++.+..+|...+..+|..
T Consensus 227 ~~GK~~g~Dl~---~gK~T~p~l----~~l------------------~~a~~~~~~~~~~A~~~L~~~~~~ 273 (297)
T 3m0g_A 227 AAGKRLGKDAE---AHKATFVSL----LGL------------------AGAKSRAADLVAEAEAALAPYGEA 273 (297)
T ss_dssp -----------------CCHHHH----HCS------------------SHHHHHHHHHHHHHHHHTGGGGGG
T ss_pred HhCCCccchhh---cCCccHHHH----HHH------------------HHHHHHHHHHHHHHHHHHHhCCCC
Confidence 55666 577777652 122 223345666677777777777654
No 33
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=91.56 E-value=2.8 Score=38.85 Aligned_cols=108 Identities=16% Similarity=0.057 Sum_probs=66.3
Q ss_pred hhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHHHHHHHhch-----
Q 019466 146 RMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQKTNIIRDY----- 214 (340)
Q Consensus 146 ~~~~g~~~Dl~--~~~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~~~~~---~~~~~A~~lG~AlQltNiLRDi----- 214 (340)
.|+.|-..|+. ....|.+++..-.++-.|++..+.+.+-.. .|.+.. ....++.++|.|+|+.+=+-|+
T Consensus 156 ~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~ 235 (309)
T 3pde_A 156 GMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPA 235 (309)
T ss_dssp THHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 46678778875 235688888887777777776666654322 232221 2347899999999999888887
Q ss_pred ------hhhhccCCCCcccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 019466 215 ------LEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALR 278 (340)
Q Consensus 215 ------~eD~~~~~~GR~YLP~d~L~~~gv~~edl~~~~~~~~~~~~i~~~~~~a~~~l~~a~~~~~~lp 278 (340)
+.|+. .|.+-+|. .-.++.--..++.++.+|...+..+|
T Consensus 236 ~~GK~~g~Dl~---egK~T~p~----------------------l~al~~a~~~~~~~~~~a~~~l~~~~ 280 (309)
T 3pde_A 236 EMGKATQKDAD---EAKNTYPG----------------------KLGLIGANQALIDTIHSGQAALQGLP 280 (309)
T ss_dssp ---------CT---TTSSSHHH----------------------HHCHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HhCCCccchhh---cCCccHHH----------------------HHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 45555 56665554 22233334556666666666666643
No 34
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=91.54 E-value=0.73 Score=42.76 Aligned_cols=109 Identities=19% Similarity=0.089 Sum_probs=67.5
Q ss_pred hhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCC-CC---CChhHHHHHHHHHHHHHHHHhch-----
Q 019466 147 MGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGT-ED---LAPDSLSNSMGLFLQKTNIIRDY----- 214 (340)
Q Consensus 147 ~~~g~~~Dl~--~~~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~~-~~---~~~~~~A~~lG~AlQltNiLRDi----- 214 (340)
|+.|-..|+. ....|.+++..-+++-.|++..+.+.+-.. .|. +. .....++.++|.|+|+.+=+-|+
T Consensus 154 ~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~ 233 (304)
T 3lsn_A 154 MVGGQAIDLGSVGLKLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTA 233 (304)
T ss_dssp HHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChH
Confidence 6678778875 235788888887777667776666655332 233 21 12346899999999999877777
Q ss_pred ------hhhhccCCCCcccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 019466 215 ------LEDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (340)
Q Consensus 215 ------~eD~~~~~~GR~YLP~d~L~~~gv~~edl~~~~~~~~~~~~i~~~~~~a~~~l~~a~~~~~~lp~~ 280 (340)
+.|+. .|.+-+|.= -.++.--..++.+..+|...+..+|..
T Consensus 234 ~~GK~~g~Dl~---egK~T~p~l----------------------~~l~~a~~~a~~~~~~A~~~L~~l~~~ 280 (304)
T 3lsn_A 234 TLGKRQGADIA---RDKPTYPAL----------------------LGLAAAKEYALELRDQALHALRPFDAA 280 (304)
T ss_dssp HC---------------CCHHHH----------------------HCHHHHHHHHHHHHHHHHHHTTTSCGG
T ss_pred HhCCCcccHHh---cCCccHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 44555 455555542 224445566777788888877778753
No 35
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=90.69 E-value=4.4 Score=38.23 Aligned_cols=92 Identities=12% Similarity=0.080 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhhhHHHhhhhhh-------------------cCCHHHHHHHHHhhhhHH-HHHHHHHhcc-cC-CCCC--
Q 019466 137 QDAIEDITKRMGAGMAKFICKE-------------------VESIDDYDEYCYYVAGLV-GLGLSKLFYA-SG-TEDL-- 192 (340)
Q Consensus 137 ~~li~~~~~~~~~g~~~Dl~~~-------------------~~t~~eL~~Yc~~vAg~V-G~l~~~il~~-~~-~~~~-- 192 (340)
.+++.+....|+.|-..|+... -.|++++..-+++=.|+. ..+.+.+-.. .| .+..
T Consensus 153 ~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~ 232 (362)
T 1yhl_A 153 LCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEM 232 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHH
Confidence 3444455567778888888522 257788777777766666 4554443211 12 1111
Q ss_pred -ChhHHHHHHHHHHHHHHHHhch----------hhhhccCCCCcccccHH
Q 019466 193 -APDSLSNSMGLFLQKTNIIRDY----------LEDINEIPKCRMFWPRE 231 (340)
Q Consensus 193 -~~~~~A~~lG~AlQltNiLRDi----------~eD~~~~~~GR~YLP~d 231 (340)
....++.++|.|+|+.+=+-|+ +.|+. .|.+-+|.=
T Consensus 233 ~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~---egK~T~p~l 279 (362)
T 1yhl_A 233 NLVERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIE---DAKCSWLAV 279 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTT---TTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChHHhCCChhhHh---cCCchHHHH
Confidence 2347899999999999877776 36888 799999973
No 36
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=90.35 E-value=11 Score=34.56 Aligned_cols=117 Identities=13% Similarity=0.016 Sum_probs=69.5
Q ss_pred HHHHHHHHhhhhHHHhhhhhhcCCHHHHHHHHHhhhhHHHHHHHHHhcccCCCCC---ChhHHHHHHHHHHHHHHHHhch
Q 019466 138 DAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDL---APDSLSNSMGLFLQKTNIIRDY 214 (340)
Q Consensus 138 ~li~~~~~~~~~g~~~Dl~~~~~t~~eL~~Yc~~vAg~VG~l~~~il~~~~~~~~---~~~~~A~~lG~AlQltNiLRDi 214 (340)
+.+.+.+..|+.|-..|+.. .++..+..++-.|++..+.+.+-..-+.+.. ....++.++|.|+|+.+=+-|+
T Consensus 138 ~~~~~~~~~~~~GQ~~dl~~----~~~y~~~i~~KTa~L~~~a~~~ga~la~~~~~~~~l~~~g~~lG~aFQi~DDilD~ 213 (289)
T 2azj_A 138 NTSIELWKDTSVGALRDMYD----NSDYIRTIELKTGSLFKLSTVLSAYASKHYNTKQQMLDVGKYLGIIYQVIDDFVDY 213 (289)
T ss_dssp HHHHHHHHHHHHHHHHTTTT----TSCHHHHHHHHTHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh----HHHHHHHHHcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33444556677787777753 4445555555555555555544222111111 1347899999999999888887
Q ss_pred h----hhhccCCCCcccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 019466 215 L----EDINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 279 (340)
Q Consensus 215 ~----eD~~~~~~GR~YLP~d~L~~~gv~~edl~~~~~~~~~~~~i~~~~~~a~~~l~~a~~~~~~lp~ 279 (340)
- .|.. .|.+-+|.=. .+.|. + +++ -..++.+..+|...+..+|.
T Consensus 214 ~~~~K~dl~---~gk~Tlp~l~-~~~g~--~------------~a~---~~~a~~~~~~A~~~L~~lp~ 261 (289)
T 2azj_A 214 KTKKVEEID---GSAKQLFKYY-REGKL--E------------EYV---RSVYLEYKQKYDELISNIPF 261 (289)
T ss_dssp TTSCTTTCC---TTGGGGHHHH-TTTCH--H------------HHH---HHHHHHHHHHHHHHHHTSCC
T ss_pred cCCCChhhh---cCcccHHHHH-HcCCH--H------------HHH---HHHHHHHHHHHHHHHHhCCC
Confidence 4 3555 5767888633 22221 1 111 13677888888888888876
No 37
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=90.16 E-value=3.9 Score=38.89 Aligned_cols=92 Identities=13% Similarity=0.069 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhhhHHHhhhhhh--------cCCHHHHHHHHHhhhhHH-HHHHHHHhcc-cC-CCCC---ChhHHHHHHH
Q 019466 137 QDAIEDITKRMGAGMAKFICKE--------VESIDDYDEYCYYVAGLV-GLGLSKLFYA-SG-TEDL---APDSLSNSMG 202 (340)
Q Consensus 137 ~~li~~~~~~~~~g~~~Dl~~~--------~~t~~eL~~Yc~~vAg~V-G~l~~~il~~-~~-~~~~---~~~~~A~~lG 202 (340)
.+++.+....++.|-..|+... -.|++++..-+++=.|.. ..+.+.+-.. .| .+.. ....++.++|
T Consensus 178 ~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG 257 (374)
T 2qis_A 178 IELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMG 257 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 3455556667778988888521 158888888877777776 4444443221 13 2211 2347899999
Q ss_pred HHHHHHHHHhch----------hhhhccCCCCcccccHH
Q 019466 203 LFLQKTNIIRDY----------LEDINEIPKCRMFWPRE 231 (340)
Q Consensus 203 ~AlQltNiLRDi----------~eD~~~~~~GR~YLP~d 231 (340)
.|+|+.+=+-|+ +.|+. .|.+-+|.=
T Consensus 258 ~aFQI~DDiLD~~gd~~~~GK~g~Dl~---~gK~T~p~l 293 (374)
T 2qis_A 258 EFFQIQDDYLDLFGDPSVTGKIGTDIQ---DNKCSWLVV 293 (374)
T ss_dssp HHHHHHHHHHHHHSCHHHHCSCCCTTT---TTCCCHHHH
T ss_pred HHHHHHHHHHHccCChhhcCCchhHHH---cCCccHHHH
Confidence 999999877776 46787 799999974
No 38
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=88.93 E-value=4.5 Score=38.32 Aligned_cols=92 Identities=13% Similarity=0.081 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhhhHHHhhhhhh--------cCCHHHHHHHHHhhhhHH-HHHHHHHhcc-cC-CCCC---ChhHHHHHHH
Q 019466 137 QDAIEDITKRMGAGMAKFICKE--------VESIDDYDEYCYYVAGLV-GLGLSKLFYA-SG-TEDL---APDSLSNSMG 202 (340)
Q Consensus 137 ~~li~~~~~~~~~g~~~Dl~~~--------~~t~~eL~~Yc~~vAg~V-G~l~~~il~~-~~-~~~~---~~~~~A~~lG 202 (340)
.+++.+....++.|-..|+... -.|++++..=+++=.|.. ..+.+.+-.. .| .+.. ....++.++|
T Consensus 171 ~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG 250 (367)
T 1uby_A 171 LELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMG 250 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHH
Confidence 3455555667778888888521 357777776666666665 3333332211 13 1211 2346799999
Q ss_pred HHHHHHHHHhchh----------hhhccCCCCcccccHH
Q 019466 203 LFLQKTNIIRDYL----------EDINEIPKCRMFWPRE 231 (340)
Q Consensus 203 ~AlQltNiLRDi~----------eD~~~~~~GR~YLP~d 231 (340)
.|+|+.+=+-|+- .|+. .|.+-+|.=
T Consensus 251 ~aFQI~DD~LD~~gd~~~~GK~g~Dl~---egK~T~p~l 286 (367)
T 1uby_A 251 EYFQIQDDYLDCFGDPALTGAVGTDIQ---DNKCSWLVV 286 (367)
T ss_dssp HHHHHHHHHHHHHCCTTCSSCCCCCSS---SCCCCHHHH
T ss_pred HHHHHHHHHHHhcCChhhcCCchhhHH---cCCchHHHH
Confidence 9999998777763 5787 799999974
No 39
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=87.83 E-value=7.3 Score=37.23 Aligned_cols=89 Identities=13% Similarity=0.138 Sum_probs=56.8
Q ss_pred HHHHHHHHhhhhHHHhhhhh-------------------hcCCHHHHHHHHHhhhhHH-HHHHHH---HhcccCCCCC--
Q 019466 138 DAIEDITKRMGAGMAKFICK-------------------EVESIDDYDEYCYYVAGLV-GLGLSK---LFYASGTEDL-- 192 (340)
Q Consensus 138 ~li~~~~~~~~~g~~~Dl~~-------------------~~~t~~eL~~Yc~~vAg~V-G~l~~~---il~~~~~~~~-- 192 (340)
+++.+....+..|-..|+.. .-.|++++..-+++=.|.. ..+.+. +++ |.++.
T Consensus 182 ~~~~~~~~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~la--ga~~~~~ 259 (390)
T 3dyh_A 182 CRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVS--EALPTVD 259 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHT--TCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHc--CCChHHH
Confidence 34444555667788788743 1246777766666655554 333333 332 22221
Q ss_pred --ChhHHHHHHHHHHHHHHHHhch----------hhhhccCCCCcccccHH
Q 019466 193 --APDSLSNSMGLFLQKTNIIRDY----------LEDINEIPKCRMFWPRE 231 (340)
Q Consensus 193 --~~~~~A~~lG~AlQltNiLRDi----------~eD~~~~~~GR~YLP~d 231 (340)
....++.++|.|+|+.+=+-|+ +.|+. .|.+-+|.=
T Consensus 260 ~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~g~Dl~---egK~T~pvi 307 (390)
T 3dyh_A 260 MGVTEELAMLMGEYFQVQDDVMDCFTPPERLGKVGTDIQ---DAKCSWLAV 307 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTT---TTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChHHhCCCcchhh---cCCccHHHH
Confidence 2347899999999999877776 46888 799988864
No 40
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=87.74 E-value=3.7 Score=39.15 Aligned_cols=135 Identities=11% Similarity=-0.003 Sum_probs=76.5
Q ss_pred HHHHhhhhHHHhhhh---hhcCCHHHHHHHHHhhhhHH-HHHHHHHhcc-cCCCC---CChhHHHHHHHHHHHHHHHHhc
Q 019466 142 DITKRMGAGMAKFIC---KEVESIDDYDEYCYYVAGLV-GLGLSKLFYA-SGTED---LAPDSLSNSMGLFLQKTNIIRD 213 (340)
Q Consensus 142 ~~~~~~~~g~~~Dl~---~~~~t~~eL~~Yc~~vAg~V-G~l~~~il~~-~~~~~---~~~~~~A~~lG~AlQltNiLRD 213 (340)
....+|+.|-..|+. ..-.|.+++..-+++-.|.. ....+.+-.. .|.+. .....++.++|.|+|+.+=+-|
T Consensus 182 ~~~~~~~~GQ~lDl~~~~~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~G~~lG~AFQI~DDiLd 261 (380)
T 3lk5_A 182 GMRTEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDDLLG 261 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334466778888885 23458888776666555554 3333333111 12221 1234788999999999987666
Q ss_pred h-----------hhhhccCCCCcccccHHHHHhcCC--Ch---hhh---hcccCCH-H---HHHH------HHHHHHHHH
Q 019466 214 Y-----------LEDINEIPKCRMFWPREIWSKYVN--KL---EDL---KYEENSD-K---AVQC------LNDMVTNAL 264 (340)
Q Consensus 214 i-----------~eD~~~~~~GR~YLP~d~L~~~gv--~~---edl---~~~~~~~-~---~~~~------i~~~~~~a~ 264 (340)
+ +.|+. .|.+-+|.=..-+..- ++ +.| +....++ . ++++ +......+.
T Consensus 262 ~~gd~~~~GK~~g~Dl~---egK~T~p~i~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~li~~~Ga~~~~~~~~~ 338 (380)
T 3lk5_A 262 VFGDPAITGKPAGDDIR---EGKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRATGAEEEVEQRIS 338 (380)
T ss_dssp HHSCHHHHSSCTTHHHH---TTCCCHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred ccCChhhhCCCchhhHh---cCCchHHHHHHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 5 67888 7999888643222210 11 112 2211122 2 2222 334445577
Q ss_pred HHHHHHHHHHHhccc
Q 019466 265 MHVEDCLKYMSALRD 279 (340)
Q Consensus 265 ~~l~~a~~~~~~lp~ 279 (340)
.+..+|...+..+|.
T Consensus 339 ~~~~~A~~~L~~lp~ 353 (380)
T 3lk5_A 339 QLTESGLAHLDDVDI 353 (380)
T ss_dssp HHHHHHHHHGGGSCC
T ss_pred HHHHHHHHHHHhCCC
Confidence 788888888888874
No 41
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=84.72 E-value=18 Score=34.13 Aligned_cols=84 Identities=13% Similarity=0.052 Sum_probs=49.3
Q ss_pred HHhhhhHHHhhhh-h----hcCCHHHHHH-HHHhhhhHHHHHHH---HHhcccCCCC---CChhHHHHHHHHHHHHHHHH
Q 019466 144 TKRMGAGMAKFIC-K----EVESIDDYDE-YCYYVAGLVGLGLS---KLFYASGTED---LAPDSLSNSMGLFLQKTNII 211 (340)
Q Consensus 144 ~~~~~~g~~~Dl~-~----~~~t~~eL~~-Yc~~vAg~VG~l~~---~il~~~~~~~---~~~~~~A~~lG~AlQltNiL 211 (340)
...+..|-..|+. . ...|.++... .-+.+|+-...+++ .+++....+. .....++..+|.|+|+.+=+
T Consensus 177 ~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DDi 256 (368)
T 2q58_A 177 IFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDV 256 (368)
T ss_dssp HHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567777773 1 1234444333 33445544333332 2232101111 22457899999999999888
Q ss_pred hc------hhhhhccCCCCcccccH
Q 019466 212 RD------YLEDINEIPKCRMFWPR 230 (340)
Q Consensus 212 RD------i~eD~~~~~~GR~YLP~ 230 (340)
-| ++.|+. .|.+-+|.
T Consensus 257 LD~~~gK~~g~Dl~---egK~T~p~ 278 (368)
T 2q58_A 257 SDYLFNDSNADDIC---RFKLTWPL 278 (368)
T ss_dssp HHHHSCCCSSCTTT---SCCCCHHH
T ss_pred hhcccCCCCCchHh---cCCcHHHH
Confidence 78 578999 89999996
No 42
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=78.99 E-value=19 Score=32.95 Aligned_cols=120 Identities=15% Similarity=0.098 Sum_probs=65.5
Q ss_pred HhhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHHHHHHHhchhhhh
Q 019466 145 KRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQKTNIIRDYLEDI 218 (340)
Q Consensus 145 ~~~~~g~~~Dl~--~~~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~~~~~---~~~~~A~~lG~AlQltNiLRDi~eD~ 218 (340)
..|+.|-..|+. ....|.+++..-.++-.|++..+.+.+-.. .+.++. ....++.++|.|+|+.+=+-|+-.|.
T Consensus 145 ~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~ 224 (291)
T 3npk_A 145 NGMVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQ 224 (291)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 346678777874 345688888887777777776666653221 222221 23478999999999999888887665
Q ss_pred ccCCCCcccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 019466 219 NEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRDH 280 (340)
Q Consensus 219 ~~~~~GR~YLP~d~L~~~gv~~edl~~~~~~~~~~~~i~~~~~~a~~~l~~a~~~~~~lp~~ 280 (340)
.. .|+-. + . | .++.+=-+.-.++.--..++.++.+|...+..++..
T Consensus 225 ~~--~GK~~---~------~---d--~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~~~ 270 (291)
T 3npk_A 225 EQ--SGKPT---N------N---D--IHKNSFVNLLGLEQAIKTKENLLNECEQDLEKLNEK 270 (291)
T ss_dssp -----------------------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HH--HCCcc---c------h---h--cCcchHHHHHHHHHhHHHHHHHHHHHHHHHHHhchh
Confidence 42 34432 1 0 0 222222222233444455666677777666666543
No 43
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=78.55 E-value=44 Score=31.34 Aligned_cols=203 Identities=10% Similarity=-0.057 Sum_probs=103.7
Q ss_pred HHHHHhcChhhhh---HHHHHHHHHhhhhhccCCCC--CChhhhHHHHHHHHHHHcccccccccCCcchhHHHhhHHHHH
Q 019466 52 ALVIQQLGTDLRN---AVCIFYLVLRALDTVEDDTS--IPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVS 126 (340)
Q Consensus 52 yla~~lLP~~~R~---av~alYAf~R~~DdI~D~~~--~~~~~~~~~L~~w~~~l~~~~~~~~~g~~~~~~l~~~l~~v~ 126 (340)
.+++.+.|....+ -++.+.+|.-.+||+-|+.. ...+.-....+...+.+++. ........|+..++.++.
T Consensus 92 ~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~~~l~~~----~~~p~~~~p~~~al~dl~ 167 (382)
T 3kb9_A 92 DLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHTALDSP----GDHLHHEDTLVAGFADSV 167 (382)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHSC----GGGTTCSSHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHHhcCC----CCCCCCCChHHHHHHHHH
Confidence 3445555554433 55677888889999999622 11211111222222333321 000112347888888887
Q ss_pred HHHHhc-Chh-HHHHHHHHHHhhhhHHHhhhh----hhcCCHHHHHHHHHhhhhHHHHHHHHHhcccCCCCC-------C
Q 019466 127 TAFLEL-GKG-YQDAIEDITKRMGAGMAKFIC----KEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDL-------A 193 (340)
Q Consensus 127 ~~~~~~-~~~-~~~li~~~~~~~~~g~~~Dl~----~~~~t~~eL~~Yc~~vAg~VG~l~~~il~~~~~~~~-------~ 193 (340)
.++... ... ...+.+ -+..++.++..... ..++|++|...+...+.|.--.+.+-.++. |.+-. .
T Consensus 168 ~~~~~~~~~~~~~r~~~-~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~-g~~l~~~~~~~p~ 245 (382)
T 3kb9_A 168 RRLYAFLPATWNARFAR-HFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSS-GCELPDAVRKHPA 245 (382)
T ss_dssp HHHTTSSCHHHHHHHHH-HHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHH-TCCCCHHHHTSHH
T ss_pred HHHHccCCHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHHc-CCCCCHHHHhChH
Confidence 776533 222 222322 22334445544332 358899999888877777533332222221 11111 1
Q ss_pred hhHHHHHHHHHHHHHHHHhchhhhhccCCCCcc-cccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 019466 194 PDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRM-FWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLK 272 (340)
Q Consensus 194 ~~~~A~~lG~AlQltNiLRDi~eD~~~~~~GR~-YLP~d~L~~~gv~~edl~~~~~~~~~~~~i~~~~~~a~~~l~~a~~ 272 (340)
...+-...+..+-|+|=|-....... +|-+ =+-.=.|.++|++.++ ..+.+..+++.....+.++..
T Consensus 246 ~~~l~~~~~~i~rL~NDi~S~~kE~~---~G~~~N~V~~~m~~~g~s~ee---------A~~~v~~~i~~~~k~~~~~~~ 313 (382)
T 3kb9_A 246 YRRAALLSQEFAAWYNDLCSLPKEIA---GDEVHNLGISLITHHSLTLEE---------AIGEVRRRVEECITEFLAVER 313 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---TTCCCSHHHHHHHHSCCCHHH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---cCCcccHHHHHHHcCCCCHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 11234556666667776666666666 6764 2333357788998664 233344555555555544443
No 44
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=77.41 E-value=19 Score=33.18 Aligned_cols=117 Identities=19% Similarity=0.051 Sum_probs=64.1
Q ss_pred HhhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC----ChhHHHHHHHHHHHHHHHHhchhhh
Q 019466 145 KRMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL----APDSLSNSMGLFLQKTNIIRDYLED 217 (340)
Q Consensus 145 ~~~~~g~~~Dl~--~~~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~~~~~----~~~~~A~~lG~AlQltNiLRDi~eD 217 (340)
..|+.|-..|+. ..-.|.+++..-+++-.|.+..+.+.+-.. .|.++. ....++.++|.|+|+.+=+-|+--|
T Consensus 159 ~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd 238 (311)
T 3llw_A 159 KGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQD 238 (311)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhHHHHHHhcCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 356678778885 345688888877776666665555554321 122221 2346889999999999988888766
Q ss_pred hccCCCCcccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019466 218 INEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSAL 277 (340)
Q Consensus 218 ~~~~~~GR~YLP~d~L~~~gv~~edl~~~~~~~~~~~~i~~~~~~a~~~l~~a~~~~~~l 277 (340)
... .|.- .. + ..|+.+=-+.-.++.--..++.++.+|...+..+
T Consensus 239 ~~~--~GK~---~g----------~-~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~ 282 (311)
T 3llw_A 239 EEE--SGKT---TH----------L-DSAKNSFVNLLGLERANNYAQTLKTEVLNDLDAL 282 (311)
T ss_dssp ----------------------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hHH--HCcc---cc----------c-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 532 3331 11 0 1222222222223444455666666777666663
No 45
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=69.70 E-value=81 Score=30.30 Aligned_cols=184 Identities=10% Similarity=-0.070 Sum_probs=89.0
Q ss_pred HHHHhcChh----hhhHHHHHHHHHhhhhhc-cCCCCCChhhhHHHHHHHHHHHcccccccccCCc------chhHHHhh
Q 019466 53 LVIQQLGTD----LRNAVCIFYLVLRALDTV-EDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTK------EYKVLMDQ 121 (340)
Q Consensus 53 la~~lLP~~----~R~av~alYAf~R~~DdI-~D~~~~~~~~~~~~L~~w~~~l~~~~~~~~~g~~------~~~~l~~~ 121 (340)
+++...|.. .=..++-+..|.-.+||. .|+...+.+....++..++..+..-..... |.+ ...|+..+
T Consensus 162 laa~~yP~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~l~~a~~~~d~l~~~~~-g~p~~~~~~~~dp~~~a 240 (433)
T 3v1v_A 162 YMVGCHPDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGRLLLAHTAIDHFHSTAE-YTPTWQASLAADAPRRA 240 (433)
T ss_dssp HHHHHCTTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHHHHHHHTTTSCCCCCTT-THHHHHHHTTSSHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHHHHHHHHHHHhhhcccC-CCCccccccCCchHHHH
Confidence 344444544 444556677778889999 787332122222344444333321000011 211 12356777
Q ss_pred HHHHHHHHHhcC-hh-HHHHHHHHHHhhhhHHHhhh----hhhcCCHHHHHHHHHhhhhHHHHHHHHH-hcccCCCC---
Q 019466 122 FHHVSTAFLELG-KG-YQDAIEDITKRMGAGMAKFI----CKEVESIDDYDEYCYYVAGLVGLGLSKL-FYASGTED--- 191 (340)
Q Consensus 122 l~~v~~~~~~~~-~~-~~~li~~~~~~~~~g~~~Dl----~~~~~t~~eL~~Yc~~vAg~VG~l~~~i-l~~~~~~~--- 191 (340)
+..+..++...- .. .+.+++ -+.++..++-.-. ...++|++|...+...+++.....++.. .|.. ..+
T Consensus 241 l~d~~~~l~~~a~~~q~~r~~~-~~~~~~~a~l~EA~W~~~g~vPsleEYl~~R~~sg~~p~~~l~e~~~g~~-lp~~v~ 318 (433)
T 3v1v_A 241 YDSAMGYFVRAATPSQSDRYRH-DMARLHLGYLAEGAWAQTGHVPEVWEYLAMRQFNNFRPCPTITDTVGGYE-LPADLH 318 (433)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHSSSTTTGGGHHHHHTCC-CCHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhHHHHHHHHHHHcCCC-CCHHHH
Confidence 888877664332 21 222322 2222333443322 2458999999998777633211111222 2211 111
Q ss_pred --CChhHHHHHHHHHHHHHHHHhchhhhhccCCCC-cc-cccHHHHHhcCCChhh
Q 019466 192 --LAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKC-RM-FWPREIWSKYVNKLED 242 (340)
Q Consensus 192 --~~~~~~A~~lG~AlQltNiLRDi~eD~~~~~~G-R~-YLP~d~L~~~gv~~ed 242 (340)
.....+-...+...-++|=|-....... +| .+ -+-.=+|+++|++.++
T Consensus 319 ~~p~~~~L~~~~~~i~rL~NDI~Sy~kE~~---~gg~~~N~V~~~mke~g~S~ee 370 (433)
T 3v1v_A 319 ARPDMQRVIALAGNATTIVNDLYSYTKELN---SPGRHLNLPVVIAEREQLCERD 370 (433)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHSHHHHTT---SSSCCCCHHHHHHHHHTCCHHH
T ss_pred hCchHHHHHHHHHHHHHHhchHHHHHHHHh---cCCCCCcHHHHHHHhcCCCHHH
Confidence 0111234556666667776666666666 53 44 4445567889998664
No 46
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=63.43 E-value=18 Score=32.73 Aligned_cols=64 Identities=13% Similarity=-0.007 Sum_probs=41.9
Q ss_pred hhhhHHHhhhh--hhcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHHHHH
Q 019466 146 RMGAGMAKFIC--KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQKTN 209 (340)
Q Consensus 146 ~~~~g~~~Dl~--~~~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~~~~~---~~~~~A~~lG~AlQltN 209 (340)
.|+.|-..|+. ....|.+++..-+++-.|++..+.+.+-.. .|.+.. ....++.++|.|+|+.+
T Consensus 150 ~~~~GQ~lDl~~~~~~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~D 219 (274)
T 3kra_B 150 GMISGLHREEEIVDGNTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMME 219 (274)
T ss_dssp THHHHHHHHTTCCTTSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678878875 236788888877777777776666655322 232221 23468899999999965
No 47
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=60.82 E-value=33 Score=31.18 Aligned_cols=106 Identities=14% Similarity=0.078 Sum_probs=60.9
Q ss_pred hhhhHHHhhhhhh-----cCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHHHHHHHhchhh
Q 019466 146 RMGAGMAKFICKE-----VESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQKTNIIRDYLE 216 (340)
Q Consensus 146 ~~~~g~~~Dl~~~-----~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~~~~~---~~~~~A~~lG~AlQltNiLRDi~e 216 (340)
.|+.|-..|+... -.|++++..-+++-.|++..+.+.+-.. .|.+.. ....++.++|.|+|+.+=+-|+-.
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~ 240 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTK 240 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4667888887521 2355555555555556665555554322 232211 234788999999999987777754
Q ss_pred hhccCCCCcccccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 019466 217 DINEIPKCRMFWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSALRD 279 (340)
Q Consensus 217 D~~~~~~GR~YLP~d~L~~~gv~~edl~~~~~~~~~~~~i~~~~~~a~~~l~~a~~~~~~lp~ 279 (340)
|. ..-+|.= + .+..-...++.+.++|...+..+|.
T Consensus 241 ~~------K~T~p~l-~---------------------gle~a~~~a~~~~~~A~~~L~~l~~ 275 (293)
T 2j1p_A 241 SS------KLTYPKL-M---------------------GLEKSREFAEKLNTEARDQLLGFDS 275 (293)
T ss_dssp --------CCCHHHH-H---------------------HHHHHHHHHHHHHHHHHHHTTTSCT
T ss_pred Cc------cccHHHH-H---------------------HHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 43 2445531 1 1333445566677777777777763
No 48
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=57.30 E-value=1.3e+02 Score=28.37 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHhch----------hhhhccCCCCcccccHH
Q 019466 195 DSLSNSMGLFLQKTNIIRDY----------LEDINEIPKCRMFWPRE 231 (340)
Q Consensus 195 ~~~A~~lG~AlQltNiLRDi----------~eD~~~~~~GR~YLP~d 231 (340)
..++.++|.|+|+.+=+-|+ +.|+. .|.+-+|.=
T Consensus 272 ~~~g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~---egK~T~p~i 315 (395)
T 3mav_A 272 EDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQ---NNKLTWPLI 315 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--------CCCTTT---TTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHhhhcccccHHh---cCCchHHHH
Confidence 46889999999999877775 57888 799999864
No 49
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=50.70 E-value=56 Score=29.69 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=33.2
Q ss_pred HHHHHHHHhhhhHHHhhhhhhcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCC--CChhHHHHHHHHHHHHHHHHhch
Q 019466 138 DAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTED--LAPDSLSNSMGLFLQKTNIIRDY 214 (340)
Q Consensus 138 ~li~~~~~~~~~g~~~Dl~~~~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~~~~--~~~~~~A~~lG~AlQltNiLRDi 214 (340)
+++.+.+..|+.|-..|+...... -+++-.|++..+.+.+-.. .|.++ .....++.++|.|+|+.|=+-|+
T Consensus 136 ~~ls~~~~~~~~GQ~lDl~~~~~~------~i~~KTg~Lf~~a~~lGa~lag~~~~~~~l~~~G~~lGlAFQI~DDiLD~ 209 (285)
T 4fp4_A 136 TYLADVAQRLSVGQALDLEGERDK------AAEFKTAPLIEAALVMPLVILGRRELIETAKKLGTKLGILYQYSDDYSDE 209 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHH------HHHHHTHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHTTCC------
T ss_pred HHHHHHHHHHHHhHHHHHhccccc------hhhcCcHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344445556777877777522111 2233333334444433211 12221 12346889999999987655554
Q ss_pred h
Q 019466 215 L 215 (340)
Q Consensus 215 ~ 215 (340)
-
T Consensus 210 ~ 210 (285)
T 4fp4_A 210 N 210 (285)
T ss_dssp -
T ss_pred C
Confidence 3
No 50
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=47.25 E-value=1.8e+02 Score=27.19 Aligned_cols=167 Identities=13% Similarity=0.101 Sum_probs=87.6
Q ss_pred hcChhhhhHHHHHHHHHhhhhhccCCCCCChhhhHHHHHHHHHHHcccccccccCCcchhHHHhhHHHHHHHHHhcChhH
Q 019466 57 QLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLELGKGY 136 (340)
Q Consensus 57 lLP~~~R~av~alYAf~R~~DdI~D~~~~~~~~~~~~L~~w~~~l~~~~~~~~~g~~~~~~l~~~l~~v~~~~~~~~~~~ 136 (340)
..+.+....+.....|.-.+||+.|+.. ..+..+.+.+-. |.++.+|+..++.++..+....-.++
T Consensus 80 ~a~~e~l~liad~~~~~F~lDD~~d~~~-------~~l~~~~~~ll~-------G~~~~~Pl~~al~dl~~rl~~~~~p~ 145 (374)
T 1yyq_A 80 KVSKECMADLSIHYTYTLVLDDSKDDPY-------PTMVNYFDDLQA-------GREQAHPWWALVNEHFPNVLRHFGPF 145 (374)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCCSCSH-------HHHTTHHHHHHH-------TCCCSSHHHHHHHHHHHHHHTTSCHH
T ss_pred CCCHHHHHHHHHHHHHHHhhcccccCcH-------HHHHHHHHHHhc-------CCCCCChHHHHHHHHHHHHHHhcCHH
Confidence 3456777888888999999999998742 234555555433 44445688888888877655443222
Q ss_pred --HHHHHHHHHhhhhHHHhhh--hhhcCCHHHHHHHHHhhhhHHHHHHHHH-hcccCC-CCCC---hhHHHHHHHHHHHH
Q 019466 137 --QDAIEDITKRMGAGMAKFI--CKEVESIDDYDEYCYYVAGLVGLGLSKL-FYASGT-EDLA---PDSLSNSMGLFLQK 207 (340)
Q Consensus 137 --~~li~~~~~~~~~g~~~Dl--~~~~~t~~eL~~Yc~~vAg~VG~l~~~i-l~~~~~-~~~~---~~~~A~~lG~AlQl 207 (340)
..++..+.+- ..|..... ...+++.++.-.|-+...|. ++.+... +..... +... ...+-..+.. +
T Consensus 146 ~~~rf~~s~~~~-~~a~~~Ea~n~~~~p~~~~Y~~~rR~~sG~-~E~~~~~~~P~~~~~e~~~~~~~~~~i~am~~---~ 220 (374)
T 1yyq_A 146 CSLNLIRSTLDF-FEGCWIEQYNFGGFPGSHDYPQFLRRMNGL-GHCVGASLWPKEQFNERSLFLEITSAIAQMEN---W 220 (374)
T ss_dssp HHHHHHHHHHHH-HHHHHHHTTCCCCCTTCTTHHHHHHHHHHC-HHHHHHTTCCTTTCCTTTTHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHH-HHHHHHHHhccCCCCCHHHHHHHHHhhccH-HHHHHHhhccccccchhhcchhHHHHHHHHHH---H
Confidence 3344333322 22332222 12344666666666666664 3433332 221111 1111 1122233333 5
Q ss_pred HHHHhchhhhhccCC--CCcccccHHHHHhcCCChhh
Q 019466 208 TNIIRDYLEDINEIP--KCRMFWPREIWSKYVNKLED 242 (340)
Q Consensus 208 tNiLRDi~eD~~~~~--~GR~YLP~d~L~~~gv~~ed 242 (340)
++..-||--=..|.- ....-+..-....+|+|.++
T Consensus 221 i~~~NDIlSf~KE~~~~Gd~~NlV~vl~~~~g~S~~e 257 (374)
T 1yyq_A 221 MVWVNDLMSFYKEFDDERDQISLVKNYVVSDEISLHE 257 (374)
T ss_dssp HHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHTCCHHH
T ss_pred HHhhhhhhccchhhhccCCccchhhhehhcCCCCHHH
Confidence 555556643222210 23456777777888988654
No 51
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=45.05 E-value=1.7e+02 Score=26.09 Aligned_cols=193 Identities=13% Similarity=0.043 Sum_probs=91.4
Q ss_pred HHHHHhcChhh---hhHHHHHHHHHhhhhhccCCCCCChhhh--HHHHHHHHHHHcccccccccCCcchhHHHhhHHHHH
Q 019466 52 ALVIQQLGTDL---RNAVCIFYLVLRALDTVEDDTSIPTDVK--VPILIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVS 126 (340)
Q Consensus 52 yla~~lLP~~~---R~av~alYAf~R~~DdI~D~~~~~~~~~--~~~L~~w~~~l~~~~~~~~~g~~~~~~l~~~l~~v~ 126 (340)
.+++.+.|... ..-+.-+.+|.-.+||+-|.... .+.+ ...+..|-. +. .. .....|+..++..+.
T Consensus 62 ~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~-~e~~~~~~~l~~~~~---~~--~~---p~~~~~~~~al~d~~ 132 (320)
T 3bny_A 62 RVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYMSF-EEGSAYNEKLIPISR---GD--VL---PDRSIPVEYIIYDLW 132 (320)
T ss_dssp HHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHHH---TS--SC---CCTTSHHHHHHHHHH
T ss_pred hhHhhhCCCCCHHHHHHHHHHHHHHHHhhcccccCCh-hhHHHHHHHHHHHhc---CC--CC---CCCcCHHHHHHHHHH
Confidence 34555556533 33568889999999999998431 1111 122233321 10 00 112245666666665
Q ss_pred HHHHhcChhHHHHHHHHHHhhhhHHH--hhhh-hhcCCHHHHHHHHHhhhhHHHHHHHHHhcccCCCCC-Ch----hHHH
Q 019466 127 TAFLELGKGYQDAIEDITKRMGAGMA--KFIC-KEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDL-AP----DSLS 198 (340)
Q Consensus 127 ~~~~~~~~~~~~li~~~~~~~~~g~~--~Dl~-~~~~t~~eL~~Yc~~vAg~VG~l~~~il~~~~~~~~-~~----~~~A 198 (340)
.++......+ ..++.+.+...+. .+-. ..++|++|...+...+.|.--.+.+-.++. |..-+ +. ...-
T Consensus 133 ~e~~~~~~~~---~~~~~~~~~~~~~e~~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~l~ 208 (320)
T 3bny_A 133 ESMRAHDREM---ADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSM-GLKLSPSELQRVREID 208 (320)
T ss_dssp HHHHHHHHHH---HHHTHHHHHHHHHHTSCCCCCCCCCHHHHHHHHHTCHHHHHHHHHHHHHH-TCCCCHHHHHHTHHHH
T ss_pred HHHHhhCHHH---HHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHhhhcccHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Confidence 5543221111 1221111121111 1111 357889888888877777433333333332 22111 11 2344
Q ss_pred HHHHHHHHHHHHHhchhhhhccCCCCc--------c-cccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHH
Q 019466 199 NSMGLFLQKTNIIRDYLEDINEIPKCR--------M-FWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVED 269 (340)
Q Consensus 199 ~~lG~AlQltNiLRDi~eD~~~~~~GR--------~-YLP~d~L~~~gv~~edl~~~~~~~~~~~~i~~~~~~a~~~l~~ 269 (340)
...+..+-++|=|-....... +|- + =.-.=.|.++|+|.++ ..+.+..+++.....+.+
T Consensus 209 ~~~~~~~~L~NDl~S~~kE~~---~g~~~~~~~~~~~N~V~~~m~~~g~s~ee---------A~~~~~~~i~~~~~~~~~ 276 (320)
T 3bny_A 209 ANCSKHLSVVNDIYSYEKELY---TSKTAHSEGGILCTSVQILAQEADVTAEA---------AKRVLFVMCREWELRHQL 276 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC--------------CCSHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchhHHHHH---hhcccccccccccchHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHH
Confidence 456666666665555555555 554 2 2333467888998654 233344455554444443
No 52
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=43.26 E-value=1.8e+02 Score=26.04 Aligned_cols=201 Identities=8% Similarity=-0.139 Sum_probs=105.9
Q ss_pred HHHHHhcChhh---hhHHHHHHHHHhhhhhccCCCCCChhhhHHHHHHHHHHHcccccccccCCc--chhHHHhhHHHHH
Q 019466 52 ALVIQQLGTDL---RNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTK--EYKVLMDQFHHVS 126 (340)
Q Consensus 52 yla~~lLP~~~---R~av~alYAf~R~~DdI~D~~~~~~~~~~~~L~~w~~~l~~~~~~~~~g~~--~~~~l~~~l~~v~ 126 (340)
.+++.+.|... ..-+.-+.+|.-.+||+-|.... .....++.+.+.+..- .. |.. ...++...+..+.
T Consensus 52 ~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~---~~~ee~~~~~~~l~~~---~~-~~~p~~~~~~~~~l~d~~ 124 (337)
T 1ps1_A 52 DLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRG---ENPEDTKQLTDQVAAA---LD-GPLPDTAPPIAHGFADIW 124 (337)
T ss_dssp HHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGG---GCHHHHHHHHHHHHGG---GT-SCCCTTSCHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCC---CCHHHHHHHHHHHHHH---cC-CCCCCCCChHHHHHHHHH
Confidence 34555566433 33567788899999999997521 0122345555555541 12 221 1346667777777
Q ss_pred HHHHhcC-hhHHHHHHHHHHhhhhHHHhhhh----hhcC-CHHHHHHHHHhhhhHHHHHHHHHhcccCCCCC-------C
Q 019466 127 TAFLELG-KGYQDAIEDITKRMGAGMAKFIC----KEVE-SIDDYDEYCYYVAGLVGLGLSKLFYASGTEDL-------A 193 (340)
Q Consensus 127 ~~~~~~~-~~~~~li~~~~~~~~~g~~~Dl~----~~~~-t~~eL~~Yc~~vAg~VG~l~~~il~~~~~~~~-------~ 193 (340)
..+...- ......+.+.+..+..++..-.. ..++ |++|...+...+.|.--.+.+..++. |..-+ .
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~-g~~l~~~~~~~p~ 203 (337)
T 1ps1_A 125 RRTCEGMTPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAG-RFEVPHRVFDSAV 203 (337)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHH-TCCCCHHHHTSHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHc-CCCCCHHHHhChH
Confidence 6654332 22222222233334445444322 3577 89888888777776544444333332 11111 1
Q ss_pred hhHHHHHHHHHHHHHHHHhchhhhhccCCCCcc-cccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 019466 194 PDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRM-FWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVEDCLK 272 (340)
Q Consensus 194 ~~~~A~~lG~AlQltNiLRDi~eD~~~~~~GR~-YLP~d~L~~~gv~~edl~~~~~~~~~~~~i~~~~~~a~~~l~~a~~ 272 (340)
...+-...+...-++|=|-....+.. +|-+ =.-.=.|.++|+|.++ ..+.+..+++.+...+.+...
T Consensus 204 ~~~l~~~~~~i~rL~NDl~S~~kE~~---~G~~~n~V~~~m~~~g~s~ee---------A~~~v~~~i~~~~~~~~~~~~ 271 (337)
T 1ps1_A 204 MSAMLQIAVDVNLLLNDIASLEKEEA---RGEQNNMVMILRREHGWSKSR---------SVSHMQNEVRARLEQYLLLES 271 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHH---TTCCCSHHHHHHHHHCCCHHH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHh---cCCcchHHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 11344566777777777777777776 6763 2334467888998654 333455555555555555443
No 53
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=42.80 E-value=31 Score=31.05 Aligned_cols=64 Identities=8% Similarity=0.017 Sum_probs=35.6
Q ss_pred hhhhHHHhhhh-hhcCCHHHHHHHHHhhhhHHHHHHHHHhcc-cCCCCC---ChhHHHHHHHHHHHHHH
Q 019466 146 RMGAGMAKFIC-KEVESIDDYDEYCYYVAGLVGLGLSKLFYA-SGTEDL---APDSLSNSMGLFLQKTN 209 (340)
Q Consensus 146 ~~~~g~~~Dl~-~~~~t~~eL~~Yc~~vAg~VG~l~~~il~~-~~~~~~---~~~~~A~~lG~AlQltN 209 (340)
.|+.|...|+. ..-.+.+.++.-+++-.|.+..+.+.+-.. .|.+.. ....++.++|.|+|+.+
T Consensus 152 ~~~~GQ~lDl~~~~~~~~eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~D 220 (273)
T 3qkc_B 152 GIVEGQYHELGLNQLNDLELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLG 220 (273)
T ss_dssp THHHHHHHHTTCCSSCCHHHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888875 333355555544344444455555544221 222221 23468889999999854
No 54
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=39.99 E-value=12 Score=25.79 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=18.8
Q ss_pred CCcccccHHHHHhcCCChhhh
Q 019466 223 KCRMFWPREIWSKYVNKLEDL 243 (340)
Q Consensus 223 ~GR~YLP~d~L~~~gv~~edl 243 (340)
+||+.||.++.++.|+.+.|-
T Consensus 21 kGqItIPkeiR~~Lgi~~Gd~ 41 (59)
T 1yfb_A 21 LGRVVIPIELRRTLGIAEKDA 41 (59)
T ss_dssp TCEEECCHHHHHHTTCCTTCE
T ss_pred CCEEEeCHHHHHHcCCCCCCE
Confidence 799999999999999987663
No 55
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=38.53 E-value=3e+02 Score=27.15 Aligned_cols=185 Identities=10% Similarity=0.055 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHhhhhhccCCCCCChhhhHHHHHHHHHHHcccccccc-cCCcch--hHHHhhHHHHHHHHHhc--Ch---
Q 019466 63 RNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFS-CGTKEY--KVLMDQFHHVSTAFLEL--GK--- 134 (340)
Q Consensus 63 R~av~alYAf~R~~DdI~D~~~~~~~~~~~~L~~w~~~l~~~~~~~~-~g~~~~--~~l~~~l~~v~~~~~~~--~~--- 134 (340)
|-.+.-+-++.-.+||+-|.... . ..++.+.+.+.. |-.. .+..++ .++..++..+......- ..
T Consensus 288 Rl~~aK~~~l~tviDD~yD~~gt-~----eEl~~ft~ai~r--WD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~ 360 (549)
T 1n1b_A 288 RKMAATIIVLATVIDDIYDVYGT-L----DELELFTDTFKR--WDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGF 360 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSC-H----HHHHHHHHHHHH--TCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhccCCC-H----HHHHHHHHHHHh--cCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 55666777888889999997542 2 244555555542 2111 011122 34555555555433211 00
Q ss_pred -hHHHHHHHHHHhhhhHHHh---hhh-hhcCCHHHHHHHHHhhhhHHHHHHHHHhcccCCCC-CCh-h-------HHHHH
Q 019466 135 -GYQDAIEDITKRMGAGMAK---FIC-KEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTED-LAP-D-------SLSNS 200 (340)
Q Consensus 135 -~~~~li~~~~~~~~~g~~~---Dl~-~~~~t~~eL~~Yc~~vAg~VG~l~~~il~~~~~~~-~~~-~-------~~A~~ 200 (340)
....+. +....++.++-. ... ...+|++|.......+.|.--.++...++. |..- .+. . .....
T Consensus 361 ~~~~~l~-~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~-g~~lt~e~~~e~~~~~p~i~~~ 438 (549)
T 1n1b_A 361 FCLQYLR-KSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTF-ANASHDTAVIDSLYQYHDILCL 438 (549)
T ss_dssp CCHHHHH-HHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTS-TTCCCCHHHHHHHHTTCHHHHH
T ss_pred cHHHHHH-HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHHHHHHHHc-CCCCcHHHHHhhhcccHHHHHH
Confidence 011111 112222334332 222 357899999998877776554444444443 2111 112 1 12233
Q ss_pred HHHHHHHHHHHhchhhhhccCCCCcc--cccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHH
Q 019466 201 MGLFLQKTNIIRDYLEDINEIPKCRM--FWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHVED 269 (340)
Q Consensus 201 lG~AlQltNiLRDi~eD~~~~~~GR~--YLP~d~L~~~gv~~edl~~~~~~~~~~~~i~~~~~~a~~~l~~ 269 (340)
.+...-+.|=|.....+.. +|-+ .+. =.|.++|+|.++ +.+-+..+++.+...+.+
T Consensus 439 ~~~i~RL~NDi~S~~~E~~---rG~v~n~V~-cyMke~g~s~ee---------A~~~i~~~i~~~wk~ln~ 496 (549)
T 1n1b_A 439 AGIILRLPDDLGTSYFELA---RGDVPKTIQ-CYMKETNASEEE---------AVEHVKFLIREAWKDMNT 496 (549)
T ss_dssp HHHHHHHHHHHC------------CCCCHHH-HHHHHHCCCHHH---------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchhhhhhc---cCCccHHHH-HHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444 6654 222 257888998664 334456666666665554
No 56
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=38.26 E-value=2e+02 Score=25.14 Aligned_cols=192 Identities=14% Similarity=0.020 Sum_probs=96.4
Q ss_pred HHHHhcChhh---hhHHHHHHHHHhhhhhccCCCCCChhhhH---HHHHHHHHHHcccccccccCCc-chhHHHhhHHHH
Q 019466 53 LVIQQLGTDL---RNAVCIFYLVLRALDTVEDDTSIPTDVKV---PILIAFHRHVYDREWHFSCGTK-EYKVLMDQFHHV 125 (340)
Q Consensus 53 la~~lLP~~~---R~av~alYAf~R~~DdI~D~~~~~~~~~~---~~L~~w~~~l~~~~~~~~~g~~-~~~~l~~~l~~v 125 (340)
++..+.|... ..-+.-+.+|.-.+||+-|... .+... ..+..| +.+. ..| ...|+..++..+
T Consensus 49 ~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~~~--~~e~~~~~~~~~~~---~~~~------~lp~~~~~~~~~l~d~ 117 (300)
T 1di1_A 49 VTCLYFPLALDDRIHFACRLLTVLFLIDDVLEHMS--FADGEAYNNRLIPI---SRGD------VLPDRTKPEEFILYDL 117 (300)
T ss_dssp HHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHH---HHTS------SCCCTTCHHHHHHHHH
T ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHhccccCC--HHHHHHHHHHHHHH---ccCC------CCCCCccHHHHHHHHH
Confidence 4455556533 3356688899999999999843 22211 222233 1111 111 123566666666
Q ss_pred HHHHHhcChhH-HHHHHHHHHhhhhHHH--hhhh-hhcCCHHHHHHHHHhhhhHHHHHHHHHhcccCCCCC-----ChhH
Q 019466 126 STAFLELGKGY-QDAIEDITKRMGAGMA--KFIC-KEVESIDDYDEYCYYVAGLVGLGLSKLFYASGTEDL-----APDS 196 (340)
Q Consensus 126 ~~~~~~~~~~~-~~li~~~~~~~~~g~~--~Dl~-~~~~t~~eL~~Yc~~vAg~VG~l~~~il~~~~~~~~-----~~~~ 196 (340)
..++......+ +++++. +..++. .+.. ..++|++|...+...+.|.--.+.+-.++. |..-+ ....
T Consensus 118 ~~~~~~~~~~~~~~~~~~----~~~~~~ea~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~-g~~l~~e~~~~~~~ 192 (300)
T 1di1_A 118 WESMRAHDAELANEVLEP----TFVFMRAQTDRARLSIHELGHYLEYREKDVGKALLSALMRFSM-GLRLSADELQDMKA 192 (300)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHTTTCCCCCCCCSHHHHHHHHHTCHHHHHHHHHHHHHH-TCCCCHHHHHTTHH
T ss_pred HHHHHhhChHHHHHHHHH----HHHHHHHHhccccCCCCCHHHHHHHHhhhccHHHHHHHHHHHc-CCCCCHHHHHHHHH
Confidence 55543221122 222332 223332 1111 358899988888877777433333333322 21111 1123
Q ss_pred HHHHHHHHHHHHHHHhchhhhhccCCCCc--------c-cccHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHH
Q 019466 197 LSNSMGLFLQKTNIIRDYLEDINEIPKCR--------M-FWPREIWSKYVNKLEDLKYEENSDKAVQCLNDMVTNALMHV 267 (340)
Q Consensus 197 ~A~~lG~AlQltNiLRDi~eD~~~~~~GR--------~-YLP~d~L~~~gv~~edl~~~~~~~~~~~~i~~~~~~a~~~l 267 (340)
.-...+..+-++|=|-....... +|- + -.-.=.|.++|++.++ ..+.+..+++.+...+
T Consensus 193 l~~~~~~~~~l~NDl~S~~kE~~---~g~~~h~~~~~~~n~V~~~m~~~g~s~ee---------A~~~~~~~i~~~~~~~ 260 (300)
T 1di1_A 193 LEANCAKQLSVVNDIYSYDKEEE---ASRTGHKEGAFLCSAVKVLAEESKLGIPA---------TKRVLWSMTREWETVH 260 (300)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCC---C----------CCCHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHH---hhccccccccccchhHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHH
Confidence 44556666666665555555555 554 1 2334467888998654 3344566666666655
Q ss_pred HHHHH
Q 019466 268 EDCLK 272 (340)
Q Consensus 268 ~~a~~ 272 (340)
....+
T Consensus 261 ~~~~~ 265 (300)
T 1di1_A 261 DEIVA 265 (300)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 57
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=32.71 E-value=21 Score=23.63 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=18.7
Q ss_pred CCcccccHHHHHhcCCChhhh
Q 019466 223 KCRMFWPREIWSKYVNKLEDL 243 (340)
Q Consensus 223 ~GR~YLP~d~L~~~gv~~edl 243 (340)
+|++.||.++.++.|+.+.|-
T Consensus 11 kgqi~IPk~ir~~lgi~~Gd~ 31 (53)
T 2l66_A 11 NYQVTIPAKVRQKFQIKEGDL 31 (53)
T ss_dssp SSCBCCCHHHHHHSCCCTTCE
T ss_pred CCEEEeCHHHHHHcCcCCCCE
Confidence 799999999999999987663
Done!