Query 019468
Match_columns 340
No_of_seqs 129 out of 1195
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 09:42:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019468.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019468hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00817 tpt Tpt phosphate/ph 100.0 4.6E-33 9.9E-38 257.1 23.9 275 17-298 5-298 (302)
2 KOG1441 Glucose-6-phosphate/ph 100.0 1.6E-34 3.4E-39 262.1 12.5 285 11-301 11-315 (316)
3 PTZ00343 triose or hexose phos 100.0 1.3E-31 2.9E-36 251.4 26.1 274 14-294 49-349 (350)
4 PLN00411 nodulin MtN21 family 100.0 1.6E-28 3.4E-33 230.1 24.6 279 14-298 11-333 (358)
5 PRK11689 aromatic amino acid e 100.0 4.7E-26 1E-30 209.5 25.1 262 16-296 10-290 (295)
6 PF08449 UAA: UAA transporter 99.9 1.7E-24 3.8E-29 199.8 27.5 262 34-298 17-302 (303)
7 PRK11272 putative DMT superfam 99.9 1.9E-24 4.2E-29 198.5 25.4 262 18-296 16-288 (292)
8 PRK11453 O-acetylserine/cystei 99.9 4.9E-24 1.1E-28 196.5 24.8 261 16-296 10-290 (299)
9 KOG1443 Predicted integral mem 99.9 1.3E-24 2.8E-29 190.7 17.3 267 23-293 22-315 (349)
10 PRK10532 threonine and homoser 99.9 4.8E-23 1E-27 189.3 25.2 248 34-298 29-286 (293)
11 PRK15430 putative chlorampheni 99.9 4.5E-23 9.7E-28 189.8 24.7 253 35-298 26-290 (296)
12 TIGR00950 2A78 Carboxylate/Ami 99.9 3.2E-23 6.9E-28 187.2 23.0 242 34-288 6-259 (260)
13 KOG1444 Nucleotide-sugar trans 99.9 6.4E-23 1.4E-27 182.5 21.1 272 24-302 19-309 (314)
14 PF06027 DUF914: Eukaryotic pr 99.9 2E-22 4.4E-27 185.4 20.0 261 34-300 30-312 (334)
15 KOG1581 UDP-galactose transpor 99.9 2.1E-20 4.5E-25 164.5 21.8 233 45-297 46-317 (327)
16 TIGR03340 phn_DUF6 phosphonate 99.8 2.4E-19 5.3E-24 163.8 21.9 204 86-290 66-280 (281)
17 KOG1442 GDP-fucose transporter 99.8 1.3E-21 2.9E-26 169.2 5.5 275 26-302 37-336 (347)
18 KOG1580 UDP-galactose transpor 99.8 5.8E-20 1.2E-24 155.8 14.4 251 45-296 48-316 (337)
19 COG5070 VRG4 Nucleotide-sugar 99.8 6E-19 1.3E-23 148.5 15.3 272 24-302 13-305 (309)
20 TIGR00688 rarD rarD protein. T 99.8 5.7E-18 1.2E-22 152.7 21.3 224 34-268 19-255 (256)
21 COG0697 RhaT Permeases of the 99.8 4.4E-17 9.6E-22 148.7 26.4 241 50-294 36-288 (292)
22 COG5006 rhtA Threonine/homoser 99.7 5.3E-16 1.1E-20 133.4 21.6 246 35-296 30-285 (292)
23 TIGR00776 RhaT RhaT L-rhamnose 99.7 1.7E-15 3.7E-20 138.8 23.7 253 19-293 10-288 (290)
24 KOG1582 UDP-galactose transpor 99.7 2E-16 4.4E-21 137.0 15.1 257 34-295 60-334 (367)
25 KOG4510 Permease of the drug/m 99.6 6.4E-16 1.4E-20 133.7 6.8 260 25-293 46-325 (346)
26 KOG2765 Predicted membrane pro 99.6 6.6E-14 1.4E-18 126.9 14.8 190 92-298 168-395 (416)
27 KOG1583 UDP-N-acetylglucosamin 99.5 1.9E-14 4.2E-19 125.2 9.0 245 51-299 34-320 (330)
28 KOG2234 Predicted UDP-galactos 99.5 3E-12 6.4E-17 116.3 23.4 278 17-298 17-327 (345)
29 COG2962 RarD Predicted permeas 99.5 2.3E-12 4.9E-17 114.0 22.0 255 34-301 24-291 (293)
30 KOG3912 Predicted integral mem 99.5 6.3E-13 1.4E-17 116.0 18.1 268 27-294 13-335 (372)
31 PF04142 Nuc_sug_transp: Nucle 99.5 1.9E-12 4.2E-17 115.3 17.4 200 84-284 18-244 (244)
32 KOG2766 Predicted membrane pro 99.4 5.6E-14 1.2E-18 121.0 1.7 257 28-296 29-302 (336)
33 PF03151 TPT: Triose-phosphate 99.4 4.9E-12 1.1E-16 104.8 11.3 130 164-293 1-153 (153)
34 PF00892 EamA: EamA-like trans 99.2 4.9E-11 1.1E-15 94.7 8.7 114 34-153 8-124 (126)
35 TIGR00803 nst UDP-galactose tr 99.0 6E-10 1.3E-14 98.3 8.0 184 107-291 2-222 (222)
36 PF13536 EmrE: Multidrug resis 99.0 1.3E-09 2.9E-14 85.6 7.8 104 55-159 2-110 (113)
37 COG2510 Predicted membrane pro 99.0 6.3E-09 1.4E-13 80.9 11.1 117 33-154 19-138 (140)
38 KOG4314 Predicted carbohydrate 98.7 6.4E-08 1.4E-12 80.9 8.2 210 83-293 53-276 (290)
39 TIGR00950 2A78 Carboxylate/Ami 98.7 4E-07 8.6E-12 82.0 13.8 115 33-150 144-259 (260)
40 PF06800 Sugar_transport: Suga 98.5 1.2E-05 2.5E-10 72.1 17.4 202 83-290 45-268 (269)
41 COG2510 Predicted membrane pro 98.4 7.3E-07 1.6E-11 69.5 7.1 123 164-292 4-138 (140)
42 PF00892 EamA: EamA-like trans 98.4 1.1E-06 2.5E-11 69.4 7.5 117 173-292 1-125 (126)
43 PRK15051 4-amino-4-deoxy-L-ara 98.3 3.7E-06 8E-11 65.6 9.0 63 92-154 46-108 (111)
44 PLN00411 nodulin MtN21 family 98.3 8.7E-06 1.9E-10 76.8 11.5 118 34-155 206-328 (358)
45 PRK02971 4-amino-4-deoxy-L-ara 98.2 2.4E-05 5.2E-10 62.7 12.0 117 163-295 2-124 (129)
46 PRK11689 aromatic amino acid e 98.2 1.6E-05 3.6E-10 73.1 11.7 70 86-155 218-287 (295)
47 PRK10532 threonine and homoser 98.2 2.8E-05 6E-10 71.5 13.0 115 34-154 165-280 (293)
48 PRK15430 putative chlorampheni 98.2 2.6E-05 5.6E-10 71.8 12.2 132 160-292 5-144 (296)
49 PRK11272 putative DMT superfam 98.2 3.1E-05 6.7E-10 71.2 12.6 107 50-156 177-286 (292)
50 PF05653 Mg_trans_NIPA: Magnes 98.0 0.00011 2.4E-09 67.6 13.3 68 87-154 53-121 (300)
51 TIGR00688 rarD rarD protein. T 98.0 8.8E-05 1.9E-09 66.7 11.5 129 163-292 2-141 (256)
52 TIGR03340 phn_DUF6 phosphonate 98.0 8.8E-05 1.9E-09 67.7 11.3 124 165-293 3-135 (281)
53 PRK15051 4-amino-4-deoxy-L-ara 97.8 0.00037 8.1E-09 54.3 11.4 59 234-292 50-108 (111)
54 PRK11453 O-acetylserine/cystei 97.8 0.0005 1.1E-08 63.3 13.3 74 83-156 214-288 (299)
55 PF03151 TPT: Triose-phosphate 97.8 0.001 2.2E-08 54.7 13.4 120 34-154 17-152 (153)
56 PRK02971 4-amino-4-deoxy-L-ara 97.7 0.00012 2.5E-09 58.7 7.4 71 87-157 51-124 (129)
57 TIGR00817 tpt Tpt phosphate/ph 97.7 0.00023 5E-09 65.7 9.2 119 34-155 162-293 (302)
58 PRK10452 multidrug efflux syst 97.6 0.00021 4.5E-09 56.3 7.2 71 86-156 33-104 (120)
59 COG0697 RhaT Permeases of the 97.5 0.002 4.4E-08 58.3 13.5 75 81-155 212-287 (292)
60 COG2962 RarD Predicted permeas 97.4 0.0013 2.9E-08 58.8 10.4 131 161-295 5-146 (293)
61 PF13536 EmrE: Multidrug resis 97.4 0.00082 1.8E-08 52.5 7.9 62 233-295 47-108 (113)
62 PRK10650 multidrug efflux syst 97.4 0.0019 4.1E-08 50.0 9.6 67 87-153 39-106 (109)
63 PRK11431 multidrug efflux syst 97.4 0.00091 2E-08 51.4 7.6 69 87-155 33-102 (105)
64 PRK09541 emrE multidrug efflux 97.4 0.00076 1.7E-08 52.4 7.0 67 90-156 37-104 (110)
65 KOG2922 Uncharacterized conser 97.3 0.0015 3.1E-08 59.3 9.4 69 87-155 67-136 (335)
66 PTZ00343 triose or hexose phos 97.3 0.0044 9.5E-08 58.5 13.2 58 97-154 290-347 (350)
67 COG2076 EmrE Membrane transpor 97.3 0.0009 2E-08 51.1 6.8 70 87-156 34-104 (106)
68 TIGR00776 RhaT RhaT L-rhamnose 97.3 0.002 4.3E-08 59.2 10.5 103 47-154 176-287 (290)
69 PRK09541 emrE multidrug efflux 97.1 0.0094 2E-07 46.3 10.7 55 240-294 49-104 (110)
70 PRK10452 multidrug efflux syst 96.9 0.019 4E-07 45.3 11.0 57 239-295 48-105 (120)
71 PRK10650 multidrug efflux syst 96.9 0.023 5.1E-07 43.9 11.1 52 241-292 55-107 (109)
72 PF08449 UAA: UAA transporter 96.8 0.015 3.2E-07 53.7 11.3 127 25-154 162-296 (303)
73 PF06800 Sugar_transport: Suga 96.7 0.035 7.5E-07 50.0 12.1 102 47-151 162-267 (269)
74 PF00893 Multi_Drug_Res: Small 96.6 0.011 2.4E-07 44.4 7.5 56 91-146 37-93 (93)
75 PRK13499 rhamnose-proton sympo 96.6 0.14 3E-06 47.9 16.0 95 86-180 76-191 (345)
76 PF06027 DUF914: Eukaryotic pr 96.6 0.041 8.8E-07 51.4 12.4 139 13-157 165-307 (334)
77 PF05653 Mg_trans_NIPA: Magnes 96.5 0.016 3.6E-07 53.3 9.5 117 161-292 5-121 (300)
78 PF04142 Nuc_sug_transp: Nucle 96.4 0.0071 1.5E-07 54.0 5.9 67 231-297 27-93 (244)
79 COG2076 EmrE Membrane transpor 96.2 0.034 7.3E-07 42.5 7.9 53 242-294 51-104 (106)
80 PF10639 UPF0546: Uncharacteri 96.0 0.02 4.3E-07 44.5 5.8 70 83-153 42-112 (113)
81 PRK11431 multidrug efflux syst 96.0 0.048 1E-06 41.9 7.9 51 242-292 50-101 (105)
82 COG4975 GlcU Putative glucose 96.0 0.0012 2.7E-08 57.5 -1.1 202 88-293 64-285 (288)
83 PF04657 DUF606: Protein of un 95.9 0.33 7.2E-06 39.3 12.7 102 50-152 30-138 (138)
84 COG5006 rhtA Threonine/homoser 95.6 0.083 1.8E-06 46.6 8.7 56 96-151 223-278 (292)
85 TIGR00803 nst UDP-galactose tr 95.5 0.24 5.1E-06 43.4 11.7 65 88-152 157-221 (222)
86 PF00893 Multi_Drug_Res: Small 95.3 0.21 4.5E-06 37.5 9.0 46 239-284 47-93 (93)
87 KOG4510 Permease of the drug/m 95.2 0.022 4.8E-07 50.5 3.8 127 17-149 193-319 (346)
88 PF07857 DUF1632: CEO family ( 94.9 0.041 8.9E-07 49.2 4.9 48 252-299 87-140 (254)
89 PF04657 DUF606: Protein of un 92.5 3.4 7.4E-05 33.4 11.6 122 165-290 3-138 (138)
90 KOG1441 Glucose-6-phosphate/ph 92.1 0.23 5E-06 45.9 4.8 137 17-155 164-307 (316)
91 PF10639 UPF0546: Uncharacteri 91.9 0.66 1.4E-05 36.0 6.4 56 235-290 55-111 (113)
92 KOG1580 UDP-galactose transpor 91.9 0.17 3.7E-06 44.2 3.4 71 82-152 240-310 (337)
93 KOG2234 Predicted UDP-galactos 91.3 0.44 9.5E-06 44.2 5.6 59 234-292 105-163 (345)
94 PF05977 MFS_3: Transmembrane 89.6 20 0.00043 35.9 16.2 18 133-150 279-296 (524)
95 KOG1581 UDP-galactose transpor 89.5 5.7 0.00012 36.3 10.9 70 83-152 241-310 (327)
96 COG5070 VRG4 Nucleotide-sugar 89.3 4 8.6E-05 35.7 9.3 126 21-149 158-290 (309)
97 KOG2765 Predicted membrane pro 89.3 1 2.3E-05 42.1 6.3 123 36-158 266-393 (416)
98 COG3238 Uncharacterized protei 89.3 8 0.00017 31.7 10.7 114 35-153 23-144 (150)
99 KOG4314 Predicted carbohydrate 88.0 0.25 5.5E-06 42.0 1.3 61 233-293 65-125 (290)
100 PRK13499 rhamnose-proton sympo 86.8 4.6 0.0001 37.9 9.0 58 239-296 91-156 (345)
101 KOG1444 Nucleotide-sugar trans 85.8 3.7 8.1E-05 37.6 7.6 132 20-154 159-299 (314)
102 KOG2922 Uncharacterized conser 84.8 0.12 2.6E-06 47.2 -2.4 118 161-293 19-136 (335)
103 COG3238 Uncharacterized protei 81.1 29 0.00063 28.4 10.9 130 162-292 4-145 (150)
104 PF06379 RhaT: L-rhamnose-prot 77.2 22 0.00048 33.2 9.5 126 56-181 40-191 (344)
105 PRK02237 hypothetical protein; 73.1 6 0.00013 30.3 3.9 48 248-295 60-107 (109)
106 KOG4831 Unnamed protein [Funct 72.5 4.5 9.8E-05 30.8 3.1 71 83-154 53-124 (125)
107 PRK02237 hypothetical protein; 71.9 5.3 0.00012 30.6 3.4 37 120-156 70-106 (109)
108 PF02694 UPF0060: Uncharacteri 71.8 5.5 0.00012 30.4 3.4 38 120-157 68-105 (107)
109 PF04342 DUF486: Protein of un 71.7 30 0.00066 26.4 7.3 57 97-153 49-106 (108)
110 PF02694 UPF0060: Uncharacteri 68.4 7.2 0.00016 29.8 3.4 48 248-295 58-105 (107)
111 COG1742 Uncharacterized conser 66.0 11 0.00025 28.6 4.0 38 120-157 69-106 (109)
112 KOG3912 Predicted integral mem 65.0 78 0.0017 28.9 9.7 135 15-153 175-332 (372)
113 KOG3817 Uncharacterized conser 61.0 45 0.00098 31.3 7.7 90 10-115 189-283 (452)
114 PF04342 DUF486: Protein of un 60.7 7.1 0.00015 29.7 2.1 29 262-290 77-105 (108)
115 COG4975 GlcU Putative glucose 58.6 4.5 9.7E-05 35.9 0.9 63 80-143 207-269 (288)
116 PF06379 RhaT: L-rhamnose-prot 58.4 72 0.0016 29.9 8.7 26 272-297 132-157 (344)
117 PF15102 TMEM154: TMEM154 prot 53.7 6.8 0.00015 31.7 1.1 18 280-297 68-85 (146)
118 COG3169 Uncharacterized protei 47.6 29 0.00063 26.1 3.5 39 253-291 71-113 (116)
119 PF01102 Glycophorin_A: Glycop 46.1 19 0.0004 28.4 2.5 10 327-336 108-117 (122)
120 KOG1582 UDP-galactose transpor 44.7 1.2E+02 0.0026 27.6 7.5 54 105-158 282-335 (367)
121 COG4657 RnfA Predicted NADH:ub 43.5 1.9E+02 0.0042 24.0 8.6 55 126-180 88-149 (193)
122 COG3086 RseC Positive regulato 41.1 73 0.0016 25.9 5.1 28 242-269 69-96 (150)
123 PF05297 Herpes_LMP1: Herpesvi 40.2 9.4 0.0002 34.5 0.0 38 132-169 74-113 (381)
124 PF01102 Glycophorin_A: Glycop 37.4 25 0.00054 27.7 2.0 11 315-325 106-116 (122)
125 PF05961 Chordopox_A13L: Chord 36.3 39 0.00085 23.4 2.5 21 277-297 6-26 (68)
126 KOG2766 Predicted membrane pro 30.8 17 0.00036 32.6 0.1 51 243-293 100-150 (336)
127 PHA03049 IMV membrane protein; 30.0 61 0.0013 22.4 2.6 21 277-297 6-26 (68)
128 COG1742 Uncharacterized conser 28.3 40 0.00086 25.7 1.7 46 250-295 61-106 (109)
129 TIGR02588 conserved hypothetic 25.9 13 0.00028 29.2 -1.3 66 271-336 4-70 (122)
130 COG5336 Uncharacterized protei 25.1 3E+02 0.0066 21.2 5.8 38 259-296 57-95 (116)
131 CHL00196 psbY photosystem II p 24.1 1.1E+02 0.0023 18.6 2.6 18 163-180 6-23 (36)
132 PF08507 COPI_assoc: COPI asso 23.8 1E+02 0.0023 24.5 3.5 29 262-291 75-103 (136)
133 TIGR01167 LPXTG_anchor LPXTG-m 23.5 47 0.001 19.2 1.1 18 273-290 10-27 (34)
134 PRK13108 prolipoprotein diacyl 23.4 70 0.0015 31.4 2.8 24 273-296 254-277 (460)
135 KOG1442 GDP-fucose transporter 23.1 16 0.00035 33.0 -1.4 52 240-291 121-172 (347)
136 PF10754 DUF2569: Protein of u 22.2 3.6E+02 0.0079 21.8 6.5 25 161-185 119-143 (149)
137 PF04246 RseC_MucC: Positive r 21.9 1.7E+02 0.0036 23.2 4.4 15 252-266 72-86 (135)
138 TIGR00806 rfc RFC reduced fola 21.5 3.4E+02 0.0074 27.1 7.1 18 169-186 272-289 (511)
139 PF03547 Mem_trans: Membrane t 21.3 65 0.0014 30.4 2.2 7 117-123 5-11 (385)
140 COG3086 RseC Positive regulato 21.0 1.2E+02 0.0026 24.7 3.2 38 109-147 74-111 (150)
141 PRK14789 lipoprotein signal pe 20.7 1.5E+02 0.0033 25.4 4.0 22 315-336 162-184 (191)
142 KOG1443 Predicted integral mem 20.6 2E+02 0.0043 26.7 4.9 37 117-153 277-313 (349)
143 PF05337 CSF-1: Macrophage col 20.5 33 0.00073 30.9 0.0 21 276-296 233-253 (285)
144 PF12768 Rax2: Cortical protei 20.4 87 0.0019 28.6 2.6 15 282-296 243-257 (281)
145 PF06570 DUF1129: Protein of u 20.3 5.5E+02 0.012 21.9 10.2 13 124-136 190-202 (206)
146 cd01324 cbb3_Oxidase_CcoQ Cyto 20.2 33 0.00073 22.1 -0.0 19 281-299 19-37 (48)
No 1
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=100.00 E-value=4.6e-33 Score=257.06 Aligned_cols=275 Identities=19% Similarity=0.250 Sum_probs=214.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCccchHHHHHHHHHHHH
Q 019468 17 SDVGAWGMNIVSSVGIIMANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSNATGYSN-SASIHVPFWELFWFSIVANT 95 (340)
Q Consensus 17 ~~~~~~~~~~~~s~~~~~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~ 95 (340)
+.+.+|. .+|++.++.||+++++ +++|..++++|+.++.+.+...++.+..+ .+.++.+++.+++.|++++.
T Consensus 5 ~~~~~w~---~~~~~~~~~NK~~l~~----~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 77 (302)
T TIGR00817 5 LLFGLWY---FLNVYFNIYNKKLLNV----FPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTI 77 (302)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHhh----CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3444554 8889999999999998 88899999999999887765554322222 12345567888999999988
Q ss_pred HhhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeecccccchhhHHHHHHHHHHH
Q 019468 96 SISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTDVKVNAKGFICACVAVFST 175 (340)
Q Consensus 96 ~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~l~l~s~~~~ 175 (340)
+..+.|.+++|++++.+++++++.|+++++++++++|||++++++++++++++|+.+....+.+++..|++++++++++|
T Consensus 78 ~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~ 157 (302)
T TIGR00817 78 GHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITF 157 (302)
T ss_pred HHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999877666677888999999999999
Q ss_pred HHHHhhhccchh--hcccccccchhhhHHHH--------hhhccCChhhHhhh---hch---HH-HHHHH-HHHHHHHHH
Q 019468 176 SLQQIDMKPLVV--RIHHCHRMTSNTSIGSL--------QKKYSVGSFELLSK---TAP---IQ-AVSLL-VFAVFCNVS 237 (340)
Q Consensus 176 a~~~v~~k~~~~--~~~~~~~~~~~~~~~~l--------~~~~~~~~~~~~~~---~~~---~~-~~~l~-~~~~~~~~~ 237 (340)
|+|+++.||..+ ++++.+.+.+....+.+ .++.+..+.+.... ... .. .+... ......+..
T Consensus 158 a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (302)
T TIGR00817 158 VSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQV 237 (302)
T ss_pred HHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987 78887777665533321 11111111000000 000 00 11111 122334456
Q ss_pred HHHhhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhhhhhhh
Q 019468 238 QYLCIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSWAIEAE 298 (340)
Q Consensus 238 ~~~~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~~~~~ 298 (340)
++..++++||+++++.+++||++++++|++++||+++..+++|.++++.|+++|++.|+++
T Consensus 238 ~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~ 298 (302)
T TIGR00817 238 AFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQK 298 (302)
T ss_pred HHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccC
Confidence 6788999999999999999999999999999999999999999999999999999766543
No 2
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-34 Score=262.05 Aligned_cols=285 Identities=30% Similarity=0.424 Sum_probs=233.3
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCC--CccchHHHHH
Q 019468 11 SSSSSVSDVGAWGMNIVSSVGIIMANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSNATGYSNSAS--IHVPFWELFW 88 (340)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~s~~~~~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~--~~~~~~~~~~ 88 (340)
...+.....+.|..|+.++++.++.||+++++ ++|++|.+++.+|+..+.+.....+..+..+..+ ++.+++..++
T Consensus 11 ~~~~~~~~~~~~~~w~~~~v~~~~~nK~il~~--~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llp 88 (316)
T KOG1441|consen 11 QLKKILRIGIAFAIWYVLSVGVIILNKYILSK--YGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLP 88 (316)
T ss_pred ccchhHHHHHHHHHHhhhheeeEEeeHhhhcc--CCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHH
Confidence 33455666677888899999999999999997 7799999999999999999888877766655322 3467899999
Q ss_pred HHHHHHHHhhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeecccccchhhHHHH
Q 019468 89 FSIVANTSISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTDVKVNAKGFICA 168 (340)
Q Consensus 89 ~~l~~~~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~l~ 168 (340)
+|+.++.+..+.|.|+.|+|+++++++|+++|++++++++++.+|++++..+++++.+..||.+++..|.++|+.|++.+
T Consensus 89 l~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a 168 (316)
T KOG1441|consen 89 LGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISA 168 (316)
T ss_pred HHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccchh--h--cccccccchhhhHHHHh---------hhccC-----ChhhHhhhhchHHHHHHHHH
Q 019468 169 CVAVFSTSLQQIDMKPLVV--R--IHHCHRMTSNTSIGSLQ---------KKYSV-----GSFELLSKTAPIQAVSLLVF 230 (340)
Q Consensus 169 l~s~~~~a~~~v~~k~~~~--~--~~~~~~~~~~~~~~~l~---------~~~~~-----~~~~~~~~~~~~~~~~l~~~ 230 (340)
+++.+..+++++++|++++ + .++.+++.+.+...... +.... .++... ....+....+
T Consensus 169 ~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~----~~~~~~~sv~ 244 (316)
T KOG1441|consen 169 MISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT----FLILLLNSVL 244 (316)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh----hHHHHHHHHH
Confidence 9999999999998888763 1 23333333322111110 00000 011000 0111111246
Q ss_pred HHHHHHHHHHhhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhhhhhhhhcC
Q 019468 231 AVFCNVSQYLCIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSWAIEAEKRK 301 (340)
Q Consensus 231 ~~~~~~~~~~~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~~~~~~~~ 301 (340)
+++.|.+.|+.++++||+++++.+.+|.++.++.|+++|+|++++.+..|+++.++|+++|++.|.+++++
T Consensus 245 ~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 245 AFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG 315 (316)
T ss_pred HHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 78899999999999999999999999999999999999999999999999999999999999988876543
No 3
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=100.00 E-value=1.3e-31 Score=251.41 Aligned_cols=274 Identities=20% Similarity=0.252 Sum_probs=209.8
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCC-C--CccchHHHHHHH
Q 019468 14 SSVSDVGAWGMNIVSSVGIIMANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSNATGYSNSA-S--IHVPFWELFWFS 90 (340)
Q Consensus 14 ~~~~~~~~~~~~~~~s~~~~~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~-~--~~~~~~~~~~~~ 90 (340)
+...++++|. .+|+..++.||+++++ +|+|+.++.+|++++++++..++..+..+.+ . .+.+++..+++|
T Consensus 49 ~~~~~~~~wy---~~s~~~~~~nK~vl~~----~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~g 121 (350)
T PTZ00343 49 KLALLFLTWY---ALNVLYVVDNKLALNM----LPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQG 121 (350)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHh----CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 3444555665 7778888999999998 8999999999999998765554443322211 1 223567789999
Q ss_pred HHHHHHhhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeecccccchhhHHHHHH
Q 019468 91 IVANTSISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTDVKVNAKGFICACV 170 (340)
Q Consensus 91 l~~~~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~l~l~ 170 (340)
+++.......+.|+++++++.+++++++.|+++++++++++|||++++++++++++++|+.++...+.++++.|++++++
T Consensus 122 l~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~ 201 (350)
T PTZ00343 122 LCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAML 201 (350)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHH
Confidence 98877777788999999999999999999999999999999999999999999999999999988888889999999999
Q ss_pred HHHHHHHHHhhhccchhhcc-------cccccchhhhHHHH--------hhhccCCh-hh-------Hhhhhc-hHHHHH
Q 019468 171 AVFSTSLQQIDMKPLVVRIH-------HCHRMTSNTSIGSL--------QKKYSVGS-FE-------LLSKTA-PIQAVS 226 (340)
Q Consensus 171 s~~~~a~~~v~~k~~~~~~~-------~~~~~~~~~~~~~l--------~~~~~~~~-~~-------~~~~~~-~~~~~~ 226 (340)
|++++|+|+++.|+.+++++ +.+...+.+..+.+ .+...... +. ...... ....+.
T Consensus 202 s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 281 (350)
T PTZ00343 202 SNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFF 281 (350)
T ss_pred HHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHH
Confidence 99999999999999986654 22221111111110 11000000 00 000000 011122
Q ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhhh
Q 019468 227 LLVFAVFCNVSQYLCIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSWA 294 (340)
Q Consensus 227 l~~~~~~~~~~~~~~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~ 294 (340)
.....++.|.+.|..+++++|.++++.+++||++++++|++++||++++.+++|.++++.|+++|++.
T Consensus 282 s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 282 SGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 22355566777788999999999999999999999999999999999999999999999999999865
No 4
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.97 E-value=1.6e-28 Score=230.10 Aligned_cols=279 Identities=12% Similarity=0.117 Sum_probs=200.4
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCccc---hHHHHHH
Q 019468 14 SSVSDVGAWGMNIVSSVGIIMANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSNAT-GYSNSASIHVP---FWELFWF 89 (340)
Q Consensus 14 ~~~~~~~~~~~~~~~s~~~~~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~~~-~~~~~~~~~~~---~~~~~~~ 89 (340)
....++....++ .+..++..+.|..++. |++ |..+.++|+.++.+++..+.+. ++.+ ++++.+ +..+...
T Consensus 11 ~~~~~~~~~~~q-~~~~~~~~~~k~a~~~---G~~-~~~~~~~R~~iA~l~Ll~~~~~~~~~~-~~~~~~~~~~~~l~l~ 84 (358)
T PLN00411 11 EAVFLTAMLATE-TSVVGISTLFKVATSK---GLN-IYPFLGYSYLLASLLLLPSLFFTNRSR-SLPPLSVSILSKIGLL 84 (358)
T ss_pred ccchHHHHHHHH-HHHHHHHHHHHHHHHC---CCC-ccHHHHHHHHHHHHHHHHHHHHHHHhc-ccCcchHHHHHHHHHH
Confidence 455555444444 5677888899999986 799 9999999999998876554332 2111 122223 3445555
Q ss_pred HHHHHHHhhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHH------hCcccChhhhHHHHHHhhhheeeeec-cc----
Q 019468 90 SIVANTSISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWIL------HGKKYSKEVKMAVVVVVVGVGVCTVT-DV---- 158 (340)
Q Consensus 90 ~l~~~~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~------~~e~~~~~~~~~l~l~~~Gv~l~~~~-~~---- 158 (340)
|++......+.+.+++|++++.++++.++.|++++++++++ ++||++++++++++++++|+.++... +.
T Consensus 85 g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~ 164 (358)
T PLN00411 85 GFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFV 164 (358)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccc
Confidence 65554455688999999999999999999999999999999 69999999999999999999875531 11
Q ss_pred -------------------ccc-hhhHHHHHHHHHHHHHHHhhhccchhhccccc-ccchhhhHHH--------Hhhhcc
Q 019468 159 -------------------KVN-AKGFICACVAVFSTSLQQIDMKPLVVRIHHCH-RMTSNTSIGS--------LQKKYS 209 (340)
Q Consensus 159 -------------------~~~-~~G~~l~l~s~~~~a~~~v~~k~~~~~~~~~~-~~~~~~~~~~--------l~~~~~ 209 (340)
..+ ..|.++.++++++||+|++++|+...+|++.. ...|.+.... ..++.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~ 244 (358)
T PLN00411 165 ASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNN 244 (358)
T ss_pred ccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 012 45999999999999999999999998887642 2223222211 111111
Q ss_pred CChhhHhhhhchHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHH
Q 019468 210 VGSFELLSKTAPIQAVSLLVFAVFCNVSQYLCIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMI 289 (340)
Q Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~ 289 (340)
...+...........+...+.+.+.+..+++.+++.+|..++++.+++|++++++|++++||++++.+++|.++++.|++
T Consensus 245 ~~~~~~~~~~~~~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~ 324 (358)
T PLN00411 245 PSVWIIHFDITLITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFY 324 (358)
T ss_pred cccceeccchHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence 11111000000111111112234567777889999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhh
Q 019468 290 VYSWAIEAE 298 (340)
Q Consensus 290 l~~~~~~~~ 298 (340)
+.++.+++|
T Consensus 325 l~~~~~~~~ 333 (358)
T PLN00411 325 AVMWGKANE 333 (358)
T ss_pred HHHhhhhhh
Confidence 988765544
No 5
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.95 E-value=4.7e-26 Score=209.48 Aligned_cols=262 Identities=12% Similarity=0.042 Sum_probs=189.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHH
Q 019468 16 VSDVGAWGMNIVSSVGIIMANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSNATGYSNSASIHVPFWELFWFSIVANT 95 (340)
Q Consensus 16 ~~~~~~~~~~~~~s~~~~~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (340)
...+++|+.++ ...|..+++ ++ |..+.++|+.++.+++..+.+. .+ .++.+++.....++.+..
T Consensus 10 l~a~~~Wg~~~-------~~~k~~~~~----~~-P~~~~~~R~~~a~l~l~~~~~~--~~--~~~~~~~~~~~~~l~~~~ 73 (295)
T PRK11689 10 LIAILLWSTMV-------GLIRGVSES----LG-PVGGAAMIYSVSGLLLLLTVGF--PR--LRQFPKRYLLAGGLLFVS 73 (295)
T ss_pred HHHHHHHHHHH-------HHHHHHHcc----CC-hHHHHHHHHHHHHHHHHHHccc--cc--cccccHHHHHHHhHHHHH
Confidence 34556788776 468999998 99 9999999999998876654321 11 222333444443445556
Q ss_pred Hhhhhhhhhc----cchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeecccc-----------c
Q 019468 96 SISGMNFSLM----LNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTDVK-----------V 160 (340)
Q Consensus 96 ~~~~~~~al~----~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~-----------~ 160 (340)
...+.+.+++ +.+++.++++.++.|+++++++++++|||++++++++++++++|++++..++.+ .
T Consensus 74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~ 153 (295)
T PRK11689 74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIAS 153 (295)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhcccc
Confidence 6666666665 467788899999999999999999999999999999999999999987654321 2
Q ss_pred chhhHHHHHHHHHHHHHHHhhhccchhhcccccccchhh----hHHHHhhhccCChhhHhhhhchHHHHHHHHHHHHHHH
Q 019468 161 NAKGFICACVAVFSTSLQQIDMKPLVVRIHHCHRMTSNT----SIGSLQKKYSVGSFELLSKTAPIQAVSLLVFAVFCNV 236 (340)
Q Consensus 161 ~~~G~~l~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (340)
+..|+++++.++++||.|+++.||..+++++........ ......++....+.. .............+...+.
T Consensus 154 ~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~l~~~~~~t~~~~~ 230 (295)
T PRK11689 154 NPLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQPAMVFS---LPAIIKLLLAAAAMGFGYA 230 (295)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcCccccCC---HHHHHHHHHHHHHHHHHHH
Confidence 346999999999999999999999987777644321111 000011111000111 0111111111123455677
Q ss_pred HHHHhhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhhhhh
Q 019468 237 SQYLCIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSWAIE 296 (340)
Q Consensus 237 ~~~~~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~~~ 296 (340)
++++.+++.+|...++..+++|+++++++++++||+++..+++|.++++.|+.+...+.+
T Consensus 231 l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~ 290 (295)
T PRK11689 231 AWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR 290 (295)
T ss_pred HHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence 788999999999999999999999999999999999999999999999999988765443
No 6
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.94 E-value=1.7e-24 Score=199.80 Aligned_cols=262 Identities=18% Similarity=0.235 Sum_probs=201.1
Q ss_pred HHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHHhhhhhhhhccchhhHHH
Q 019468 34 MANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSNATGYSNSASIHVPFWELFWFSIVANTSISGMNFSLMLNSVGFYQ 113 (340)
Q Consensus 34 ~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~ 113 (340)
+.++.+.+.+ ++.++|..+++.|++...+.......... +.++++.+++++++.++++.++..+.|.|++|+|.+..+
T Consensus 17 ~~qE~i~~~~-~~~~~~~~lt~~q~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~ 94 (303)
T PF08449_consen 17 ILQEKIMTTP-YGSPFPLFLTFVQFAFNALFSFILLSLFK-FPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQI 94 (303)
T ss_pred HHHHHHHcCC-CCCcccHHHHHHHHHHHHHHHHHHHHhcc-ccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 4455555542 33447999999999999887766544332 112667889999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeecccc----c------chhhHHHHHHHHHHHHHHHhhhc
Q 019468 114 ISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTDVK----V------NAKGFICACVAVFSTSLQQIDMK 183 (340)
Q Consensus 114 ~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~----~------~~~G~~l~l~s~~~~a~~~v~~k 183 (340)
++|++.|+++++++++++|||+++++++++++.++|+++....|.+ . ...|+++.+.+.+++|.+.++++
T Consensus 95 ~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe 174 (303)
T PF08449_consen 95 VFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQE 174 (303)
T ss_pred HHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998765421 1 12399999999999999999999
Q ss_pred cchhhcc--cccccchhhhHHHH-------h--hhccCChhhHhhhhchHHH---HHHHHHHHHHHHHHHHhhcccchhH
Q 019468 184 PLVVRIH--HCHRMTSNTSIGSL-------Q--KKYSVGSFELLSKTAPIQA---VSLLVFAVFCNVSQYLCIGRFSAVT 249 (340)
Q Consensus 184 ~~~~~~~--~~~~~~~~~~~~~l-------~--~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~l~~~~~~~ 249 (340)
|+.+++. +.+.+.+....+.. . .+.-.+...... ..|-.. +.....+..++...+..+++.||++
T Consensus 175 ~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~-~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~ 253 (303)
T PF08449_consen 175 KLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFIS-AHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALT 253 (303)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 9986554 45555543322211 0 010111111111 112111 1222255566667788899999999
Q ss_pred HHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhhhhhhh
Q 019468 250 FQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSWAIEAE 298 (340)
Q Consensus 250 ~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~~~~~ 298 (340)
.++++++++++++++|.+++|+++++.||+|+++++.|..+|++.++|+
T Consensus 254 ~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 254 TTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999877754
No 7
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.94 E-value=1.9e-24 Score=198.52 Aligned_cols=262 Identities=10% Similarity=0.055 Sum_probs=190.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHH-HHH
Q 019468 18 DVGAWGMNIVSSVGIIMANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSNATGYSNSASIHVPFWELFWFSIVA-NTS 96 (340)
Q Consensus 18 ~~~~~~~~~~~s~~~~~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 96 (340)
..++|+.++ .+.|...++ .+ |..++++|++++.+++..+.+.+..+ .+++.+++.....|.+. ...
T Consensus 16 ~~~iWg~~~-------~~~K~~~~~----~~-p~~~~~~R~~~a~l~ll~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~ 82 (292)
T PRK11272 16 LYIIWGSTY-------LVIRIGVES----WP-PLMMAGVRFLIAGILLLAFLLLRGHP-LPTLRQWLNAALIGLLLLAVG 82 (292)
T ss_pred HHHHHhhHH-------HHHHHHhcc----CC-HHHHHHHHHHHHHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHHHHHHH
Confidence 445677655 468998887 88 99999999999988765544332222 12344555566667654 456
Q ss_pred hhhhhhhh-ccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeec-ccccchhhHHHHHHHHHH
Q 019468 97 ISGMNFSL-MLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVT-DVKVNAKGFICACVAVFS 174 (340)
Q Consensus 97 ~~~~~~al-~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~-~~~~~~~G~~l~l~s~~~ 174 (340)
..+.+++. ++++++.++++.++.|+++++++.+ +|||++++++++++++++|+.+...+ +.+.+..|++++++++++
T Consensus 83 ~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~ 161 (292)
T PRK11272 83 NGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASAS 161 (292)
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHH
Confidence 67788888 9999999999999999999999986 69999999999999999999887643 334566899999999999
Q ss_pred HHHHHhhhccchhhcccccccchhhhHHHH-------hhhccCChhhHhhhhchHHHHHHHH-HHHHHHHHHHHhhcccc
Q 019468 175 TSLQQIDMKPLVVRIHHCHRMTSNTSIGSL-------QKKYSVGSFELLSKTAPIQAVSLLV-FAVFCNVSQYLCIGRFS 246 (340)
Q Consensus 175 ~a~~~v~~k~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~l~~~~ 246 (340)
||.+.+..||..++.+ .....+....... ..+..... ............+.. .+...+..+++.+++.+
T Consensus 162 ~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~ 238 (292)
T PRK11272 162 WAFGSVWSSRLPLPVG-MMAGAAEMLAAGVVLLIASLLSGERLTA--LPTLSGFLALGYLAVFGSIIAISAYMYLLRNVR 238 (292)
T ss_pred HHHHHHHHHhcCCCcc-hHHHHHHHHHHHHHHHHHHHHcCCcccc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999764332 2222222211111 11101000 000011111111111 23455667788899999
Q ss_pred hhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhhhhh
Q 019468 247 AVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSWAIE 296 (340)
Q Consensus 247 ~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~~~ 296 (340)
+...++..+++|+++++++++++||+++..+++|.++++.|+++.+++++
T Consensus 239 ~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 239 PALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999876554
No 8
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.93 E-value=4.9e-24 Score=196.50 Aligned_cols=261 Identities=18% Similarity=0.201 Sum_probs=185.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHH-
Q 019468 16 VSDVGAWGMNIVSSVGIIMANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSNATGYSNSASIHVPFWELFWFSIVAN- 94 (340)
Q Consensus 16 ~~~~~~~~~~~~~s~~~~~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 94 (340)
...+++|+.+++ +.|..+++ ++ |..+.++|+.++.+.+..+.+. ++.+++..+..++...
T Consensus 10 l~~~~~Wg~~~~-------~~k~~~~~----~~-p~~~~~~R~~~a~~~l~~~~~~-------~~~~~~~~~~~g~~~~~ 70 (299)
T PRK11453 10 LLVVVVWGLNFV-------VIKVGLHN----MP-PLMLAGLRFMLVAFPAIFFVAR-------PKVPLNLLLGYGLTISF 70 (299)
T ss_pred HHHHHHHhhhHH-------HHHHHHhc----CC-HHHHHHHHHHHHHHHHHHHhcC-------CCCchHHHHHHHHHHHH
Confidence 344567887663 57998887 89 9999999999876654443321 1223444555566433
Q ss_pred HHhhhhhhhhcc-chhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeecc---cccchhhHHHHHH
Q 019468 95 TSISGMNFSLML-NSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTD---VKVNAKGFICACV 170 (340)
Q Consensus 95 ~~~~~~~~al~~-~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~---~~~~~~G~~l~l~ 170 (340)
....+.+.+++| .|++.++++.++.|+++.+++++++|||++++++++++++++|+.++...+ .+.+..|+.+++.
T Consensus 71 ~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~ 150 (299)
T PRK11453 71 GQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLA 150 (299)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHH
Confidence 344466778887 689999999999999999999999999999999999999999999876532 2235679999999
Q ss_pred HHHHHHHHHhhhccchhhccccccc---chhhhHHH--------HhhhccCChhhHhhhhchHHHHHHHH----HHHHHH
Q 019468 171 AVFSTSLQQIDMKPLVVRIHHCHRM---TSNTSIGS--------LQKKYSVGSFELLSKTAPIQAVSLLV----FAVFCN 235 (340)
Q Consensus 171 s~~~~a~~~v~~k~~~~~~~~~~~~---~~~~~~~~--------l~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~ 235 (340)
++++||.+++.+||..++.+....+ .+.+.... ..++ ..+.........+.....++. .+...+
T Consensus 151 aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~ 229 (299)
T PRK11453 151 AAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDG-SATMIHSLVTIDMTTILSLMYLAFVATIVGY 229 (299)
T ss_pred HHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcC-chhhhhhhccCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999986555433222 22221111 1111 000000000011111222222 333445
Q ss_pred HHHHHhhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhhhhh
Q 019468 236 VSQYLCIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSWAIE 296 (340)
Q Consensus 236 ~~~~~~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~~~ 296 (340)
..+++.+++.++.+.+.+..++|++++++|++++||+++..+++|.++++.|+++..+.++
T Consensus 230 ~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 230 GIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 5667788999999999999999999999999999999999999999999999998876554
No 9
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.93 E-value=1.3e-24 Score=190.71 Aligned_cols=267 Identities=20% Similarity=0.266 Sum_probs=204.0
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhc--CCCCCCCCccchHH----HHHHHHHHHHH
Q 019468 23 GMNIVSSVGIIMANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSNAT--GYSNSASIHVPFWE----LFWFSIVANTS 96 (340)
Q Consensus 23 ~~~~~~s~~~~~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~~~--~~~~~~~~~~~~~~----~~~~~l~~~~~ 96 (340)
..+..+|+++.+.+|+...+ |++|+.++.+|+++-.+......+. +..+..+.+..|+. ..++++..+.+
T Consensus 22 l~yY~~Si~Ltf~~~~~~~~----f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~D 97 (349)
T KOG1443|consen 22 LLYYFLSIGLTFYFKWLTKN----FHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALD 97 (349)
T ss_pred HHHHHHHHHHHHHhhhhhcC----cCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcc
Confidence 45568999999999999998 8889999999998877765554332 11111122334554 45899999999
Q ss_pred hhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeecccccchhhHHHHHHHHHHHH
Q 019468 97 ISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTDVKVNAKGFICACVAVFSTS 176 (340)
Q Consensus 97 ~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~l~l~s~~~~a 176 (340)
+.+.|+++.|++++++++.|+++++|+.+++.+|.-||+++.-...++++.+|+++.+..+.+++..|+.+.++++++.+
T Consensus 98 IGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~aS~~sG 177 (349)
T KOG1443|consen 98 IGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLAASLLSG 177 (349)
T ss_pred cccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccchhhc-----ccccccc----hhhh----HHHHhhhccCChhhH-hhhhc---h---HHH-HHHHHHHHHHH
Q 019468 177 LQQIDMKPLVVRI-----HHCHRMT----SNTS----IGSLQKKYSVGSFEL-LSKTA---P---IQA-VSLLVFAVFCN 235 (340)
Q Consensus 177 ~~~v~~k~~~~~~-----~~~~~~~----~~~~----~~~l~~~~~~~~~~~-~~~~~---~---~~~-~~l~~~~~~~~ 235 (340)
+...+++.++++- ||.+.+. |+++ .....|+.......- ..... + .+. ......+++..
T Consensus 178 lRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l~ 257 (349)
T KOG1443|consen 178 LRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLLE 257 (349)
T ss_pred hhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 9999888887442 2322221 1111 111112211110000 00000 0 011 11112556667
Q ss_pred HHHHHhhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhh
Q 019468 236 VSQYLCIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSW 293 (340)
Q Consensus 236 ~~~~~~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~ 293 (340)
.+-+.++.+++..+.++++..|.+.+.+++..+.+|.++..+|.|..+++.|+..+.+
T Consensus 258 ~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 258 FSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 7778899999999999999999999999999999999999999999999999999843
No 10
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.92 E-value=4.8e-23 Score=189.32 Aligned_cols=248 Identities=13% Similarity=0.097 Sum_probs=180.5
Q ss_pred HHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHHhhhhhhhhccchhhHHH
Q 019468 34 MANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSNATGYSNSASIHVPFWELFWFSIVANTSISGMNFSLMLNSVGFYQ 113 (340)
Q Consensus 34 ~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~ 113 (340)
...|+++++ ++ |..+.++|++++.+++..+.+.+..+ .++.+++..+..|+.......+++++++|+|++.++
T Consensus 29 ~~~K~~~~~----~~-~~~~~~~R~~~a~l~l~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~ 101 (293)
T PRK10532 29 SLAKSLFPL----VG-APGVTALRLALGTLILIAIFKPWRLR--FAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAV 101 (293)
T ss_pred HHHHHHHHH----cC-HHHHHHHHHHHHHHHHHHHHhHHhcc--CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 468999998 88 99999999999988766554322212 334455666677877777788899999999999999
Q ss_pred HHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeec--c-cccchhhHHHHHHHHHHHHHHHhhhccchhhcc
Q 019468 114 ISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVT--D-VKVNAKGFICACVAVFSTSLQQIDMKPLVVRIH 190 (340)
Q Consensus 114 ~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~--~-~~~~~~G~~l~l~s~~~~a~~~v~~k~~~~~~~ 190 (340)
++.++.|+++++++ +|++++. ..+.++++|+.++... + .+.+..|++++++++++||.|++..|+..++++
T Consensus 102 ~l~~t~Pi~~~ll~----~~~~~~~--~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~ 175 (293)
T PRK10532 102 ALEFTGPLAVALFS----SRRPVDF--VWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAIYILSGQRAGAEHG 175 (293)
T ss_pred HHHHHHHHHHHHHh----cCChHHH--HHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999887 3666544 4566789999876532 2 234678999999999999999999999977766
Q ss_pred cccccchhhhHHHHh------hhccCChhhHhhhhchHHHHHH-HHHHHHHHHHHHHhhcccchhHHHHHhhhHHHHHHH
Q 019468 191 HCHRMTSNTSIGSLQ------KKYSVGSFELLSKTAPIQAVSL-LVFAVFCNVSQYLCIGRFSAVTFQVLGHMKTVCILT 263 (340)
Q Consensus 191 ~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~l~~~~~~~~si~~~~~~v~~~~ 263 (340)
+.... +........ ........+.. .....+.+ ...+...+..+++.+++.++..++++.+++|+++++
T Consensus 176 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l 251 (293)
T PRK10532 176 PATVA-IGSLIAALIFVPIGALQAGEALWHWS---ILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAV 251 (293)
T ss_pred chHHH-HHHHHHHHHHHHHHHHccCcccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHH
Confidence 64432 222221110 00000001000 00011111 223445566778889999999999999999999999
Q ss_pred HHHHhhCccccccchhhhhHHhHhHHHHhhhhhhh
Q 019468 264 LGWLLFDSQLTVKNILGMTVAVLGMIVYSWAIEAE 298 (340)
Q Consensus 264 ~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~~~~~ 298 (340)
+|++++||+++..+++|.++++.|++++....+++
T Consensus 252 ~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~ 286 (293)
T PRK10532 252 SGMIFLGETLTLIQWLALGAIIAASMGSTLTIRRE 286 (293)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999998665443
No 11
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.92 E-value=4.5e-23 Score=189.81 Aligned_cols=253 Identities=10% Similarity=0.021 Sum_probs=173.8
Q ss_pred HHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHh-cCCCCC-CCCccchHH---HHHHHHHHHHHhhhhhhhhccchh
Q 019468 35 ANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSNA-TGYSNS-ASIHVPFWE---LFWFSIVANTSISGMNFSLMLNSV 109 (340)
Q Consensus 35 ~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~~-~~~~~~-~~~~~~~~~---~~~~~l~~~~~~~~~~~al~~~~~ 109 (340)
..|.. .+ ++ |..+.++|++++.+++..... ++..+. .++..+++. ....+...+.+..++++|++++|+
T Consensus 26 ~~k~~-~~----~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 99 (296)
T PRK15430 26 YFKLI-YY----VP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHM 99 (296)
T ss_pred HHHHh-cC----CC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 45875 55 88 999999999999875544332 221110 001112222 223234566788899999999999
Q ss_pred hHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeecccccchhhHHHHHHHHHHHHHHHhhhccchhhc
Q 019468 110 GFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTDVKVNAKGFICACVAVFSTSLQQIDMKPLVVRI 189 (340)
Q Consensus 110 ~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~l~l~s~~~~a~~~v~~k~~~~~~ 189 (340)
+.++++.++.|+++++++++++|||++++++++++++++|++++...+.+. ..++++++++||.|.+..|+...+.
T Consensus 100 ~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~----~~~~l~aa~~~a~~~i~~r~~~~~~ 175 (296)
T PRK15430 100 LEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL----PIIALGLAFSFAFYGLVRKKIAVEA 175 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc----cHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999999999876433222 1468889999999999999875321
Q ss_pred --ccccccchhhhHHHHhh-hccCChhhHhhhhchH---HHH-HHHHHHHHHHHHHHHhhcccchhHHHHHhhhHHHHHH
Q 019468 190 --HHCHRMTSNTSIGSLQK-KYSVGSFELLSKTAPI---QAV-SLLVFAVFCNVSQYLCIGRFSAVTFQVLGHMKTVCIL 262 (340)
Q Consensus 190 --~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~---~~~-~l~~~~~~~~~~~~~~l~~~~~~~~si~~~~~~v~~~ 262 (340)
+......|........- ....++..... ..+. ... .....+...+.+++..+++.+|...+.+.+++|++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~ 254 (296)
T PRK15430 176 QTGMLIETMWLLPVAAIYLFAIADSSTSHMG-QNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMF 254 (296)
T ss_pred chhHHHHHHHHHHHHHHHHHHHccCCccccc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 11111122221211110 00000000000 0011 111 1112344667777889999999999999999999999
Q ss_pred HHHHHhhCccccccchhhhhHHhHhHHHHhhhhhhh
Q 019468 263 TLGWLLFDSQLTVKNILGMTVAVLGMIVYSWAIEAE 298 (340)
Q Consensus 263 ~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~~~~~ 298 (340)
++|++++||++++.+++|+++++.|+.+...+....
T Consensus 255 ~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~~~ 290 (296)
T PRK15430 255 LLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIYT 290 (296)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988888876555443
No 12
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.92 E-value=3.2e-23 Score=187.15 Aligned_cols=242 Identities=12% Similarity=0.006 Sum_probs=181.6
Q ss_pred HHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccchHHHHHHHH-HHHHHhhhhhhhhccchhhHH
Q 019468 34 MANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSNATGYSNSASIHVPFWELFWFSI-VANTSISGMNFSLMLNSVGFY 112 (340)
Q Consensus 34 ~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~al~~~~~~~~ 112 (340)
...|+.+++ ..| |..+.+.|++.+.+++....+.+ + ++.+++..+..+. ....+..+.++|++|+|++.+
T Consensus 6 ~~~k~~~~~---~~~-~~~~~~~r~~~~~l~l~~~~~~~--~---~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~ 76 (260)
T TIGR00950 6 VVIGQYLEG---QVP-LYFAVFRRLIFALLLLLPLLRRR--P---PLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEA 76 (260)
T ss_pred HHHHHHHhc---CCC-HHHHHHHHHHHHHHHHHHHHHhc--c---CHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 468998875 367 89999999998888765554433 2 2334444555554 567788899999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeecc-cccchhhHHHHHHHHHHHHHHHhhhccchhhccc
Q 019468 113 QISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTD-VKVNAKGFICACVAVFSTSLQQIDMKPLVVRIHH 191 (340)
Q Consensus 113 ~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~-~~~~~~G~~l~l~s~~~~a~~~v~~k~~~~~~~~ 191 (340)
+++.++.|+++++++.+++|||++++++.+++++++|+.++...+ .+.+..|+++++.++++|+.++++.|+...++++
T Consensus 77 ~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~ 156 (260)
T TIGR00950 77 ALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGP 156 (260)
T ss_pred HHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCc
Confidence 999999999999999999999999999999999999998875443 3456789999999999999999999999877664
Q ss_pred cc--ccchhhhHHHH-------hhhccCChhhHhhhhchHHHHHHHH-HHHHHHHHHHHhhcccchhHHHHHhhhHHHHH
Q 019468 192 CH--RMTSNTSIGSL-------QKKYSVGSFELLSKTAPIQAVSLLV-FAVFCNVSQYLCIGRFSAVTFQVLGHMKTVCI 261 (340)
Q Consensus 192 ~~--~~~~~~~~~~l-------~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~l~~~~~~~~si~~~~~~v~~ 261 (340)
.. ...+....+.. ..+ +....+. ......+.... .....+..+++.+++.++.+++...+++|+++
T Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~ 232 (260)
T TIGR00950 157 ELLQFTGWVLLLGALLLLPFAWFLG-PNPQALS---LQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVA 232 (260)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC-CCCCcch---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 22 21122222111 111 1111100 01111111111 23456667788999999999999999999999
Q ss_pred HHHHHHhhCccccccchhhhhHHhHhH
Q 019468 262 LTLGWLLFDSQLTVKNILGMTVAVLGM 288 (340)
Q Consensus 262 ~~~s~~l~ge~~s~~~~iG~~lil~Gv 288 (340)
++++++++||+++..+++|.++++.|+
T Consensus 233 ~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 233 LLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999886
No 13
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=6.4e-23 Score=182.54 Aligned_cols=272 Identities=22% Similarity=0.253 Sum_probs=215.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCC-CccchHHHHHHHHHHHHHhhhhhh
Q 019468 24 MNIVSSVGIIMANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSNATGYSNSAS-IHVPFWELFWFSIVANTSISGMNF 102 (340)
Q Consensus 24 ~~~~~s~~~~~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~ 102 (340)
.+.++|+.++++||+++.+ |+||..+.+...|.+...+.+....+.|..+.++ .....|+|+|.++++.++.+....
T Consensus 19 ~Y~~sS~lm~vvNK~vls~--y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~ 96 (314)
T KOG1444|consen 19 FYCLSSILMTVVNKIVLSS--YNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSK 96 (314)
T ss_pred HHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHHccc
Confidence 3458899999999999999 6666555666699999999888888887776433 344578899999999999999999
Q ss_pred hhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeecccccchhhHHHHHHHHHHHHHHHhhh
Q 019468 103 SLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTDVKVNAKGFICACVAVFSTSLQQIDM 182 (340)
Q Consensus 103 al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~l~l~s~~~~a~~~v~~ 182 (340)
+++|+++++++++|..+|+++++.+.+++|.|+++..+.++....+|......+|.+++..|+.|++.+.++.+.+.++.
T Consensus 97 slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a~~~v~~ 176 (314)
T KOG1444|consen 97 SLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTAAFVVYV 176 (314)
T ss_pred cccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchh--hcccccccchhhhHH-------H-HhhhccCChhhHhhhhc-------hHHHHHHHHHHHHHHHHHHHhhccc
Q 019468 183 KPLVV--RIHHCHRMTSNTSIG-------S-LQKKYSVGSFELLSKTA-------PIQAVSLLVFAVFCNVSQYLCIGRF 245 (340)
Q Consensus 183 k~~~~--~~~~~~~~~~~~~~~-------~-l~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~l~~~ 245 (340)
|+... +..-..++.+..+.. . +..+ .+ .+..... ........+++++.+++.+++.+..
T Consensus 177 kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge--~~--~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~~ct~~~ 252 (314)
T KOG1444|consen 177 KKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGE--LD--ALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSFLCTRVN 252 (314)
T ss_pred HHhhccccccceeEEeehhHHHHHHHHHHHHHhcc--hH--HHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99862 222233333222111 1 1111 11 1111111 1223334458999999999999999
Q ss_pred chhHHHHHhhhHHHHHHHHHH-HhhCccccccchhhhhHHhHhHHHHhhhhhhhhcCC
Q 019468 246 SAVTFQVLGHMKTVCILTLGW-LLFDSQLTVKNILGMTVAVLGMIVYSWAIEAEKRKP 302 (340)
Q Consensus 246 ~~~~~si~~~~~~v~~~~~s~-~l~ge~~s~~~~iG~~lil~Gv~l~~~~~~~~~~~~ 302 (340)
|+++.++++ ++..+...++. +++|+++++..++|..+-+.|..+|++.+.++|+.+
T Consensus 253 SAtT~tivG-~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~ 309 (314)
T KOG1444|consen 253 SATTTTIVG-AKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQP 309 (314)
T ss_pred cccceeehh-hhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCC
Confidence 999999999 55555555555 455567999999999999999999999988776555
No 14
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.90 E-value=2e-22 Score=185.38 Aligned_cols=261 Identities=18% Similarity=0.243 Sum_probs=190.7
Q ss_pred HHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHH--HHhcCCCCC-CCCccchHHHHHHHHHHHHHhhhhhhhhccchhh
Q 019468 34 MANKQLMSPSGLGFGFATTLTGFHFAVTALVGLV--SNATGYSNS-ASIHVPFWELFWFSIVANTSISGMNFSLMLNSVG 110 (340)
Q Consensus 34 ~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~--~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~ 110 (340)
..+..+-+. |.+.|..-+++.++.-.++-.. ..+++..+. ...+.+|++++.++++...++++.+.|++|++++
T Consensus 30 ~~s~~l~~~---~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvt 106 (334)
T PF06027_consen 30 TFSSLLANK---GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYTSVT 106 (334)
T ss_pred HHHHHHHhc---CccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccHh
Confidence 334444443 5667888888887755543222 222221111 1235677888888999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeeccc---------ccchhhHHHHHHHHHHHHHHHhh
Q 019468 111 FYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTDV---------KVNAKGFICACVAVFSTSLQQID 181 (340)
Q Consensus 111 ~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~---------~~~~~G~~l~l~s~~~~a~~~v~ 181 (340)
.++++.++..+++++++++++|+|+++.+++|++++++|++++...|. +....|+++++.++++||++++.
T Consensus 107 S~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV~ 186 (334)
T PF06027_consen 107 SVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNVL 186 (334)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998776542 13478999999999999999999
Q ss_pred hccchhhcccccccchhhhHHHHh--------hhccCChhhHhhhhch-HHHHHHHH-HHHHHHHHHHHhhcccchhHHH
Q 019468 182 MKPLVVRIHHCHRMTSNTSIGSLQ--------KKYSVGSFELLSKTAP-IQAVSLLV-FAVFCNVSQYLCIGRFSAVTFQ 251 (340)
Q Consensus 182 ~k~~~~~~~~~~~~~~~~~~~~l~--------~~~~~~~~~~~~~~~~-~~~~~l~~-~~~~~~~~~~~~l~~~~~~~~s 251 (340)
.++..++.+..+.+.+.++.+.+. +..++.. ..+... ........ +-+..+...-..++..||+...
T Consensus 187 ~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~---~~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~n 263 (334)
T PF06027_consen 187 EEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIES---IHWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFN 263 (334)
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhc---cCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceee
Confidence 999998888777666555444321 2111111 111111 11111111 1122222334568899999999
Q ss_pred HHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhhhhhhhhc
Q 019468 252 VLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSWAIEAEKR 300 (340)
Q Consensus 252 i~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~~~~~~~ 300 (340)
+......+.+++.+++++|+++++..++|.+++++|..+|+..+.++++
T Consensus 264 LsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~ 312 (334)
T PF06027_consen 264 LSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE 312 (334)
T ss_pred hHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence 9889999999999999999999999999999999999999976665433
No 15
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.87 E-value=2.1e-20 Score=164.51 Aligned_cols=233 Identities=17% Similarity=0.180 Sum_probs=192.7
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHHhhhhhhhhccchhhHHHHHhhhhHHHHH
Q 019468 45 LGFGFATTLTGFHFAVTALVGLVSNATGYSNSASIHVPFWELFWFSIVANTSISGMNFSLMLNSVGFYQISKLSMIPVVC 124 (340)
Q Consensus 45 ~g~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ 124 (340)
..|++|.++.++|-+.+.++...+..+...+ .+.+.||+++..+++.+....++++.|++|++.+...+.|++.-+.++
T Consensus 46 ~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~-~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVm 124 (327)
T KOG1581|consen 46 ERFEHSLFLVFCQRLVALLVSYAMLKWWKKE-LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVM 124 (327)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhccccc-CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHH
Confidence 3477799999999999999886665543333 356778999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCcccChhhhHHHHHHhhhheeeeecc-c--------ccchhhHHHHHHHHHHHHHHHhhhccchhhccccccc
Q 019468 125 VMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTD-V--------KVNAKGFICACVAVFSTSLQQIDMKPLVVRIHHCHRM 195 (340)
Q Consensus 125 ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~-~--------~~~~~G~~l~l~s~~~~a~~~v~~k~~~~~~~~~~~~ 195 (340)
+++.++.|+|++..+++...++..|+.+....+ . ..+++|+.++..+-+.+++.|..++++.
T Consensus 125 lmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf--------- 195 (327)
T KOG1581|consen 125 LMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLF--------- 195 (327)
T ss_pred HHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHh---------
Confidence 999999999999999999999999999865432 1 2468999999999999999999555554
Q ss_pred chhhhHHHHhhhccCChhhHhhhhchHHHHH------------------------------HHHHHHHHHHHHHHhhccc
Q 019468 196 TSNTSIGSLQKKYSVGSFELLSKTAPIQAVS------------------------------LLVFAVFCNVSQYLCIGRF 245 (340)
Q Consensus 196 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------------------------------l~~~~~~~~~~~~~~l~~~ 245 (340)
+++++++++++.+.+.+..+. ...++...+.+.|+.+++.
T Consensus 196 ----------~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~F 265 (327)
T KOG1581|consen 196 ----------KKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERF 265 (327)
T ss_pred ----------ccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhc
Confidence 444444444444443333222 1226777788889999999
Q ss_pred chhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhhhhhh
Q 019468 246 SAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSWAIEA 297 (340)
Q Consensus 246 ~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~~~~ 297 (340)
||.+...+++.+.++++.+|.+++|.+++..||+|..+++.|+.+-..-+.+
T Consensus 266 Gslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 266 GSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999886655554
No 16
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.84 E-value=2.4e-19 Score=163.81 Aligned_cols=204 Identities=14% Similarity=0.125 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHhhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeeccc-ccchhh
Q 019468 86 LFWFSIVANTSISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTDV-KVNAKG 164 (340)
Q Consensus 86 ~~~~~l~~~~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~-~~~~~G 164 (340)
....+........+.+.++++.+++.++.+.++.|+++++++++++|||++++++++++++++|+.++...+. +.+..|
T Consensus 66 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g 145 (281)
T TIGR03340 66 LAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKA 145 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhH
Confidence 3334556777888999999999999999999999999999999999999999999999999999998765432 345678
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhccccccc----chhhhHH-----HHhhhccCChhhHhhhhchHHH-HHHHHHHHHH
Q 019468 165 FICACVAVFSTSLQQIDMKPLVVRIHHCHRM----TSNTSIG-----SLQKKYSVGSFELLSKTAPIQA-VSLLVFAVFC 234 (340)
Q Consensus 165 ~~l~l~s~~~~a~~~v~~k~~~~~~~~~~~~----~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~ 234 (340)
+.++++++++|+.|++..|+...+.++.... .+..... ......+..+..... ...... ......+...
T Consensus 146 ~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~l~ 224 (281)
T TIGR03340 146 YAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYA-RQILPSATLGGLMIGGA 224 (281)
T ss_pred HHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhH-HHHHHHHHHHHHHHHHH
Confidence 8899999999999999999876554432211 1111110 000000111110000 011111 1112244556
Q ss_pred HHHHHHhhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHH
Q 019468 235 NVSQYLCIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIV 290 (340)
Q Consensus 235 ~~~~~~~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l 290 (340)
+..+++.+++.++...+...+++|++++++|++++||+++..+++|.++++.|+++
T Consensus 225 ~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 225 YALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 77778899999999999999999999999999999999999999999999999875
No 17
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.3e-21 Score=169.19 Aligned_cols=275 Identities=20% Similarity=0.216 Sum_probs=213.3
Q ss_pred HHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhc-----CCCCCCCCcc---chHHHHHHHHHHHHHh
Q 019468 26 IVSSVGIIMANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSNAT-----GYSNSASIHV---PFWELFWFSIVANTSI 97 (340)
Q Consensus 26 ~~~s~~~~~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~~~-----~~~~~~~~~~---~~~~~~~~~l~~~~~~ 97 (340)
+.+|+++.+.||.+++..+...+.|++.+..|+++...++..+.+. ..+..+.-+. ..++.+++++.+..++
T Consensus 37 wv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI 116 (347)
T KOG1442|consen 37 WVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMI 116 (347)
T ss_pred eeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeeh
Confidence 4678888999999999733446669999999999988876665431 2222211122 2567899999999999
Q ss_pred hhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeecc---cccchhhHHHHHHHHHH
Q 019468 98 SGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTD---VKVNAKGFICACVAVFS 174 (340)
Q Consensus 98 ~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~---~~~~~~G~~l~l~s~~~ 174 (340)
.+.|.+++|++++.+.+-+++..+|++++.++++|+|-+..-..++.+++.|-.+-...+ ..+++.|++++..|+++
T Consensus 117 ~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~GvifGVlaSl~ 196 (347)
T KOG1442|consen 117 SFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIFGVLASLA 196 (347)
T ss_pred hccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988876655 45789999999999999
Q ss_pred HHHHHhhhccchhhcccc-cccc-hhhhH------------HHHhhhccCChhhHhhhhchHHHHHHHHHHHHHHHHHHH
Q 019468 175 TSLQQIDMKPLVVRIHHC-HRMT-SNTSI------------GSLQKKYSVGSFELLSKTAPIQAVSLLVFAVFCNVSQYL 240 (340)
Q Consensus 175 ~a~~~v~~k~~~~~~~~~-~~~~-~~~~~------------~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 240 (340)
-|+..++.|+.......+ +.+. ++... +.+++..+.+.. .....+..+.....++|..++...+
T Consensus 197 vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l--~a~~Fw~~mtLsglfgF~mgyvTg~ 274 (347)
T KOG1442|consen 197 VALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHL--PAIKFWILMTLSGLFGFAMGYVTGW 274 (347)
T ss_pred HHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccc--hHHHHHHHHHHHHHHHHHhhheeeE
Confidence 999999999887555432 2222 22211 112221111111 0110011112223477888888888
Q ss_pred hhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhhhhhhhhcCC
Q 019468 241 CIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSWAIEAEKRKP 302 (340)
Q Consensus 241 ~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~~~~~~~~~ 302 (340)
-++.+||.++.+.++.|...-.+++..+.+|.-+..-|-|-++++.|...|++.|+++.+++
T Consensus 275 QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~ 336 (347)
T KOG1442|consen 275 QIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKA 336 (347)
T ss_pred EEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999887666
No 18
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.84 E-value=5.8e-20 Score=155.82 Aligned_cols=251 Identities=14% Similarity=0.094 Sum_probs=188.1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHHhhhhhhhhccchhhHHHHHhhhhHHHHH
Q 019468 45 LGFGFATTLTGFHFAVTALVGLVSNATGYSNSASIHVPFWELFWFSIVANTSISGMNFSLMLNSVGFYQISKLSMIPVVC 124 (340)
Q Consensus 45 ~g~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ 124 (340)
..|.+.+.+.++|+....+..=.+...+. +.+.++.+-+.+..+++.+.+.....|.|++|+|.++..+-+++.|+-++
T Consensus 48 E~FTfalaLVf~qC~~N~vfAkvl~~ir~-~~~~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVM 126 (337)
T KOG1580|consen 48 EKFTFALALVFFQCTANTVFAKVLFLIRK-KTEIDNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVM 126 (337)
T ss_pred heehHHHHHHHHHHHHHHHHHHhheeecc-cccccCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCccee
Confidence 34778899999999999887644332222 22245566677888889888888999999999999999999999999999
Q ss_pred HHHHHHhCcccChhhhHHHHHHhhhheeeeeccc-------ccchhhHHHHHHHHHHHHHHHhhhccchhhcc--ccccc
Q 019468 125 VMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTDV-------KVNAKGFICACVAVFSTSLQQIDMKPLVVRIH--HCHRM 195 (340)
Q Consensus 125 ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~-------~~~~~G~~l~l~s~~~~a~~~v~~k~~~~~~~--~~~~~ 195 (340)
+++.++.+++++|+++..++.+++||++....+. ..--.|-++.+.|-..+++...+++|+...|. ...+|
T Consensus 127 ilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM 206 (337)
T KOG1580|consen 127 ILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMM 206 (337)
T ss_pred eeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhH
Confidence 9999999999999999999999999999776532 22347999999999999999998888764443 23333
Q ss_pred chhhhHHHHhhhc----cCChhhHhhhh--chH---HHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhhHHHHHHHHHH
Q 019468 196 TSNTSIGSLQKKY----SVGSFELLSKT--API---QAVSLLVFAVFCNVSQYLCIGRFSAVTFQVLGHMKTVCILTLGW 266 (340)
Q Consensus 196 ~~~~~~~~l~~~~----~~~~~~~~~~~--~~~---~~~~l~~~~~~~~~~~~~~l~~~~~~~~si~~~~~~v~~~~~s~ 266 (340)
....+.+.+.-+. .-+-|+.+.+. .|. -...+.+.+.+.+.+.|..+...+|.+-|++.+.+..++++.|.
T Consensus 207 ~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SV 286 (337)
T KOG1580|consen 207 FYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISV 286 (337)
T ss_pred HHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHH
Confidence 3222222221100 00112111111 111 12223336677788889999999999999999999999999999
Q ss_pred HhhCccccccchhhhhHHhHhHHHHhhhhh
Q 019468 267 LLFDSQLTVKNILGMTVAVLGMIVYSWAIE 296 (340)
Q Consensus 267 ~l~ge~~s~~~~iG~~lil~Gv~l~~~~~~ 296 (340)
++|+++++..||+|.++++.|...-....+
T Consensus 287 llf~npls~rQwlgtvlVF~aL~~D~~~GK 316 (337)
T KOG1580|consen 287 LLFNNPLSGRQWLGTVLVFSALTADVVDGK 316 (337)
T ss_pred HHhcCcCcHHHHHHHHHHHHHhhhHhhcCC
Confidence 999999999999999999999887654444
No 19
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.81 E-value=6e-19 Score=148.53 Aligned_cols=272 Identities=18% Similarity=0.188 Sum_probs=218.7
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHHhhhhhhh
Q 019468 24 MNIVSSVGIIMANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSNATGYSNSASIHVPFWELFWFSIVANTSISGMNFS 103 (340)
Q Consensus 24 ~~~~~s~~~~~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a 103 (340)
.+..+|+.+++-||+++.. .||+..+.+.+.|-+...+-+..+.+.|..+ .+..+.+.|++++.+..++++....+
T Consensus 13 sYc~sSIlmTltNKyVls~--~gfnMnflll~vQSlvcvv~l~iLk~l~~~~--fR~t~aK~WfpiSfLLv~MIyt~SKs 88 (309)
T COG5070 13 SYCFSSILMTLTNKYVLSN--LGFNMNFLLLAVQSLVCVVGLLILKFLRLVE--FRLTKAKKWFPISFLLVVMIYTSSKS 88 (309)
T ss_pred HHHHHHHHHHHhhHheecC--CCCchhhHHHHHHHHHHHHHHHHHHHHhHhh--eehhhhhhhcCHHHHHHHHHHhcccc
Confidence 3457788899999999999 6677668888899888877777777666666 44566788999999999999999999
Q ss_pred hccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeecccc--------cchhhHHHHHHHHHHH
Q 019468 104 LMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTDVK--------VNAKGFICACVAVFST 175 (340)
Q Consensus 104 l~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~--------~~~~G~~l~l~s~~~~ 175 (340)
++|.+++.+++.+.++.+.++..+.+++|.|.+..++.+.++.+..-+..+++|.+ +| .|++|+..++++.
T Consensus 89 LqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN-~GY~Wm~~Nclss 167 (309)
T COG5070 89 LQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILN-PGYLWMFTNCLSS 167 (309)
T ss_pred eeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccC-CceEEEehhhHhH
Confidence 99999999999999999999999999999999999999999999999998888862 45 4999999999999
Q ss_pred HHHHhhhccch--hhcccccccchhhhH--------HHHhhhccCChhhHhhhhchHH---HHHHHHHHHHHHHHHHHhh
Q 019468 176 SLQQIDMKPLV--VRIHHCHRMTSNTSI--------GSLQKKYSVGSFELLSKTAPIQ---AVSLLVFAVFCNVSQYLCI 242 (340)
Q Consensus 176 a~~~v~~k~~~--~~~~~~~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~l 242 (340)
|.+....|+.. .+....+.+.+.... .-+.| ++++-.+.....+.. ..+...++++..++.-|.+
T Consensus 168 aafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~e--dws~~n~annl~~d~l~am~ISgl~svgiSy~saWcv 245 (309)
T COG5070 168 AAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFE--DWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCV 245 (309)
T ss_pred HHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhc--cCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeE
Confidence 99999988865 233333333332211 22223 455544433333322 3334447778888888999
Q ss_pred cccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhhhhhhhhcCC
Q 019468 243 GRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSWAIEAEKRKP 302 (340)
Q Consensus 243 ~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~~~~~~~~~ 302 (340)
+.+++++.++++.++.....+.|.++|||+.+...+..+.+-....+.|..++.++++++
T Consensus 246 rVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q~q 305 (309)
T COG5070 246 RVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQNQ 305 (309)
T ss_pred eehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999998887754443
No 20
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.81 E-value=5.7e-18 Score=152.68 Aligned_cols=224 Identities=13% Similarity=0.014 Sum_probs=149.6
Q ss_pred HHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHH-hcCCCCC-----C-CCccc-hHHHHHHHHHHHHHhhhhhhhhc
Q 019468 34 MANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSN-ATGYSNS-----A-SIHVP-FWELFWFSIVANTSISGMNFSLM 105 (340)
Q Consensus 34 ~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~-~~~~~~~-----~-~~~~~-~~~~~~~~l~~~~~~~~~~~al~ 105 (340)
.+.|. ..+ ++ |.++.++|++++.+++..+. ..+..+. + .++.+ +......|++...+..++++|++
T Consensus 19 ~~~k~-~~~----~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~ 92 (256)
T TIGR00688 19 YYSKL-LKP----LP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIGFNWWLFIWAVN 92 (256)
T ss_pred HHHHH-hcc----CC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45787 455 88 99999999999987654432 2221110 0 11111 22244456677788889999999
Q ss_pred cchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeecccccchhhHHHHHHHHHHHHHHHhhhccc
Q 019468 106 LNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTDVKVNAKGFICACVAVFSTSLQQIDMKPL 185 (340)
Q Consensus 106 ~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~l~l~s~~~~a~~~v~~k~~ 185 (340)
+++++.++++.++.|+++++++++++|||++++++++++++++|+.++..++.+.+ .++++++++||.|.+..|+.
T Consensus 93 ~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~~l~aa~~~a~~~i~~~~~ 168 (256)
T TIGR00688 93 NGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WEALVLAFSFTAYGLIRKAL 168 (256)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999988654332222 35788999999999999997
Q ss_pred hhhcccccccchh---hhHHH--HhhhccCChhhHhhhhchHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhhHHHH
Q 019468 186 VVRIHHCHRMTSN---TSIGS--LQKKYSVGSFELLSKTAPIQAVSLLVFAVFCNVSQYLCIGRFSAVTFQVLGHMKTVC 260 (340)
Q Consensus 186 ~~~~~~~~~~~~~---~~~~~--l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~si~~~~~~v~ 260 (340)
..+ +........ ..... .......++..................+...+...+..+++.++...++..+++|++
T Consensus 169 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~ 247 (256)
T TIGR00688 169 KNT-DLAGFCLETLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTI 247 (256)
T ss_pred CCC-CcchHHHHHHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 543 211111100 00110 000001100000000011111222224556677778889999999999999999999
Q ss_pred HHHHHHHh
Q 019468 261 ILTLGWLL 268 (340)
Q Consensus 261 ~~~~s~~l 268 (340)
++++|.++
T Consensus 248 ~~~~~~~~ 255 (256)
T TIGR00688 248 MMLCVSFL 255 (256)
T ss_pred HHHHHHHh
Confidence 99999875
No 21
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.80 E-value=4.4e-17 Score=148.68 Aligned_cols=241 Identities=17% Similarity=0.138 Sum_probs=171.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccchHH-HHHHHHHHHHHhhhhhhhhccchhhHHHHHhhhhHHHHHHHHH
Q 019468 50 ATTLTGFHFAVTALVGLVSNATGYSNSASIHVPFWE-LFWFSIVANTSISGMNFSLMLNSVGFYQISKLSMIPVVCVMEW 128 (340)
Q Consensus 50 p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~ 128 (340)
+......|+..+.+........+..+..+.+.+++. .+..++.......+++.++++++++.++.+.++.|+++.+++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~ 115 (292)
T COG0697 36 FLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAV 115 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 566667799888777333333322111122233333 3333456677888899999999999999999999999999997
Q ss_pred -HHhCcccChhhhHHHHHHhhhheeeeeccccc---chhhHHHHHHHHHHHHHHHhhhccchhhcccccccc-hhhhHH-
Q 019468 129 -ILHGKKYSKEVKMAVVVVVVGVGVCTVTDVKV---NAKGFICACVAVFSTSLQQIDMKPLVVRIHHCHRMT-SNTSIG- 202 (340)
Q Consensus 129 -l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~---~~~G~~l~l~s~~~~a~~~v~~k~~~~~~~~~~~~~-~~~~~~- 202 (340)
+++|||++++++.+++++++|+.++...+... +..|+.+++.+++++|++.++.|+.. +.++..... +.....
T Consensus 116 ~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 194 (292)
T COG0697 116 LLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLAL 194 (292)
T ss_pred HHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHH
Confidence 77799999999999999999999998876543 35899999999999999999999876 444322222 111100
Q ss_pred HHh---hhccCC-hhhHhhhhchHHHHHHHHH-HHHHHHHHHHhhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccc
Q 019468 203 SLQ---KKYSVG-SFELLSKTAPIQAVSLLVF-AVFCNVSQYLCIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKN 277 (340)
Q Consensus 203 ~l~---~~~~~~-~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~ 277 (340)
... ...+.+ +... ...........+ +...+..+++..++.++...+....++|+.+++.+++++||+++..+
T Consensus 195 ~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~ 271 (292)
T COG0697 195 LLLLLFFLSGFGAPILS---RAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQ 271 (292)
T ss_pred HHHHHHHhccccccCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 000 000110 0000 001111111112 22466777888999999999999999999999999999999999999
Q ss_pred hhhhhHHhHhHHHHhhh
Q 019468 278 ILGMTVAVLGMIVYSWA 294 (340)
Q Consensus 278 ~iG~~lil~Gv~l~~~~ 294 (340)
++|+++++.|+.+.+.+
T Consensus 272 ~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 272 LLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999998765
No 22
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.74 E-value=5.3e-16 Score=133.39 Aligned_cols=246 Identities=14% Similarity=0.076 Sum_probs=173.2
Q ss_pred HHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHHhhhhhhhhccchhhHHHH
Q 019468 35 ANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSNATGYSNSASIHVPFWELFWFSIVANTSISGMNFSLMLNSVGFYQI 114 (340)
Q Consensus 35 ~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~ 114 (340)
+.|.++.. ++ |.-.+..|..++.+++..+.|-.+.+ ..+.+++..+.+|+....++.++|.|++.+|.+++..
T Consensus 30 ~Ak~LFP~----vG-~~g~t~lRl~~aaLIll~l~RPwr~r--~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVA 102 (292)
T COG5006 30 FAKSLFPL----VG-AAGVTALRLAIAALILLALFRPWRRR--LSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVA 102 (292)
T ss_pred HHHHHccc----cC-hhhHHHHHHHHHHHHHHHHhhHHHhc--cChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Confidence 47888887 67 99999999999999877765522223 4566788889999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeecc---cccchhhHHHHHHHHHHHHHHHhhhccchhhccc
Q 019468 115 SKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTD---VKVNAKGFICACVAVFSTSLQQIDMKPLVVRIHH 191 (340)
Q Consensus 115 l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~---~~~~~~G~~l~l~s~~~~a~~~v~~k~~~~~~~~ 191 (340)
+.++.|+.+++++ .+|. ++.+-+.+.+.|+.+....+ .+.|+.|..+++.++.||+.|.+..||.-+.-|.
T Consensus 103 iEF~GPL~vA~~~----sRr~--~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g 176 (292)
T COG5006 103 IEFTGPLAVALLS----SRRL--RDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRAGRAEHG 176 (292)
T ss_pred hhhccHHHHHHHh----ccch--hhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCCC
Confidence 9999999887654 3443 44455556677776654332 3568999999999999999999998887644443
Q ss_pred ccccchhhhHHHHh-h--hccCChhhHhhhhchHHHHHHHHHHHH----HHHHHHHhhcccchhHHHHHhhhHHHHHHHH
Q 019468 192 CHRMTSNTSIGSLQ-K--KYSVGSFELLSKTAPIQAVSLLVFAVF----CNVSQYLCIGRFSAVTFQVLGHMKTVCILTL 264 (340)
Q Consensus 192 ~~~~~~~~~~~~l~-~--~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~l~~~~~~~~si~~~~~~v~~~~~ 264 (340)
..-+...+....+. - ....... ..+.|--...-+..+.+ -+..-...+++.++.++++...+||.++.+.
T Consensus 177 ~~g~a~gm~vAaviv~Pig~~~ag~---~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~ 253 (292)
T COG5006 177 TAGVAVGMLVAALIVLPIGAAQAGP---ALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALS 253 (292)
T ss_pred chHHHHHHHHHHHHHhhhhhhhcch---hhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHH
Confidence 22222222222110 0 0000000 00111000000011222 1223345699999999999999999999999
Q ss_pred HHHhhCccccccchhhhhHHhHhHHHHhhhhh
Q 019468 265 GWLLFDSQLTVKNILGMTVAVLGMIVYSWAIE 296 (340)
Q Consensus 265 s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~~~ 296 (340)
|++++||.+|..||.|++.++.+....+...+
T Consensus 254 G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~ 285 (292)
T COG5006 254 GLIFLGETLTLIQWLAIAAVIAASAGSTLTAR 285 (292)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhccccccC
Confidence 99999999999999999999999887665443
No 23
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.73 E-value=1.7e-15 Score=138.83 Aligned_cols=253 Identities=11% Similarity=0.059 Sum_probs=172.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHH-HhcCCCCCCCCcc-chHHHHHHHHHHHHH
Q 019468 19 VGAWGMNIVSSVGIIMANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVS-NATGYSNSASIHV-PFWELFWFSIVANTS 96 (340)
Q Consensus 19 ~~~~~~~~~~s~~~~~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~-~~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 96 (340)
+++|+.+.+ ..|... + ++ +.++. |..++.++.... ...+..+ .+.. .+..-+..|+..+.+
T Consensus 10 ~~~wGs~g~-------~~k~~~-g----~~-~~~~~--~~~~g~l~~~~~~~~~~~~~--~~~~~~~~~g~l~G~~w~ig 72 (290)
T TIGR00776 10 ALFWGSFVL-------INVKIG-G----GP-YSQTL--GTTFGALILSIAIAIFVLPE--FWALSIFLVGLLSGAFWALG 72 (290)
T ss_pred HHHHhhhHH-------HHhccC-C----CH-HHHHH--HHHHHHHHHHHHHHHHhCCc--ccccHHHHHHHHHHHHHHhh
Confidence 456664442 345544 3 66 55554 676676654432 2222111 1111 122223334557778
Q ss_pred hhhhhhhhccchhhHHHHHhh-hhHHHHHHHHHHHhCcccChhh----hHHHHHHhhhheeeeecccc-------cc-hh
Q 019468 97 ISGMNFSLMLNSVGFYQISKL-SMIPVVCVMEWILHGKKYSKEV----KMAVVVVVVGVGVCTVTDVK-------VN-AK 163 (340)
Q Consensus 97 ~~~~~~al~~~~~~~~~~l~~-~~Pi~~~ll~~l~~~e~~~~~~----~~~l~l~~~Gv~l~~~~~~~-------~~-~~ 163 (340)
+.+++.|.++++++.+..+-+ +.+++..+.+.+++||+.++++ +++++++++|+.+....+.+ .+ ..
T Consensus 73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~ 152 (290)
T TIGR00776 73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKK 152 (290)
T ss_pred hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhh
Confidence 899999999999999998888 8888999999999999999999 99999999999997654321 33 68
Q ss_pred hHHHHHHHHHHHHHHHhhhccchhhcccccccchhhh---HHH-Hh-hhc-cCChhhHhhhhchHHHHHHHHHHHHHHHH
Q 019468 164 GFICACVAVFSTSLQQIDMKPLVVRIHHCHRMTSNTS---IGS-LQ-KKY-SVGSFELLSKTAPIQAVSLLVFAVFCNVS 237 (340)
Q Consensus 164 G~~l~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~---~~~-l~-~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (340)
|+++++.|+++|+.|.+..|+. .++|.+...+..+ ... .. -.+ +..++..- ......+ ...+....+..
T Consensus 153 Gi~~~l~sg~~y~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~Gi~~~ia~~~ 227 (290)
T TIGR00776 153 GILLLLMSTIGYLVYVVVAKAF--GVDGLSVLLPQAIGMVIGGIIFNLGHILAKPLKKY--AILLNIL-PGLMWGIGNFF 227 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc--CCCcceehhHHHHHHHHHHHHHHHHHhcccchHHH--HHHHHHH-HHHHHHHHHHH
Confidence 9999999999999999999976 3666666433221 111 00 000 00121100 0001111 22223344555
Q ss_pred HHHhhc-ccchhHHHHHhhhHHHHHHHHHHHhhCccccccch----hhhhHHhHhHHHHhh
Q 019468 238 QYLCIG-RFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNI----LGMTVAVLGMIVYSW 293 (340)
Q Consensus 238 ~~~~l~-~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~----iG~~lil~Gv~l~~~ 293 (340)
++...+ +.++.+.++...++|+.+++.+++++||+.+..|+ +|+++++.|+.+...
T Consensus 228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 556678 89999999999999999999999999999999999 999999999988653
No 24
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.72 E-value=2e-16 Score=137.00 Aligned_cols=257 Identities=16% Similarity=0.169 Sum_probs=192.0
Q ss_pred HHHHhhhcCCCCCcc-hhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHHhhhhhhhhccchhhHH
Q 019468 34 MANKQLMSPSGLGFG-FATTLTGFHFAVTALVGLVSNATGYSNSASIHVPFWELFWFSIVANTSISGMNFSLMLNSVGFY 112 (340)
Q Consensus 34 ~~~k~~~~~~~~g~~-~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~ 112 (340)
...++++.. .||+ +-+.+++.|++.-..+...-. ...+..++..|||.+..++.+..+...+.+-++.|.+.+..
T Consensus 60 y~qElif~~--~gfkp~GWylTlvQf~~Ysg~glie~--~~~~~k~r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQ 135 (367)
T KOG1582|consen 60 YLQELIFNV--EGFKPFGWYLTLVQFLVYSGFGLIEL--QLIQTKRRVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQ 135 (367)
T ss_pred HHHHHHhcc--ccCcccchHHHHHHHHHHHhhhheEE--EeecccceecchhHhhhhHhhhhhccccCcCccccccCcHH
Confidence 456777777 5677 568999999876544333322 22232256678999999999988999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeeccc----ccchhhHHHHHHHHHHHHHHHhhhccchhh
Q 019468 113 QISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTDV----KVNAKGFICACVAVFSTSLQQIDMKPLVVR 188 (340)
Q Consensus 113 ~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~----~~~~~G~~l~l~s~~~~a~~~v~~k~~~~~ 188 (340)
.+.|+|.-+-+++.+.++-++|+.++++.+..+..+|..+.+..|. +||..|+++.-++-+++|+-...+++.++.
T Consensus 136 viFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~ 215 (367)
T KOG1582|consen 136 VIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKM 215 (367)
T ss_pred HHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 9999999999999999999999999999999999999999888764 588999999999999999998888888866
Q ss_pred ccc--ccccchhhhHH-------HHhhhccCChhhHhhhhchH---HHH-HHHHHHHHHHHHHHHhhcccchhHHHHHhh
Q 019468 189 IHH--CHRMTSNTSIG-------SLQKKYSVGSFELLSKTAPI---QAV-SLLVFAVFCNVSQYLCIGRFSAVTFQVLGH 255 (340)
Q Consensus 189 ~~~--~~~~~~~~~~~-------~l~~~~~~~~~~~~~~~~~~---~~~-~l~~~~~~~~~~~~~~l~~~~~~~~si~~~ 255 (340)
++. -|+..+..-.+ ....+.-.+.+. .+..+|. +-. .....+++...+....++..++.+++.+++
T Consensus 216 ~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~-fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTT 294 (367)
T KOG1582|consen 216 NPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWT-FCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTT 294 (367)
T ss_pred CCCCcceEEEeeecccHHHHHHHHHhcccchhhhH-HHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHH
Confidence 553 23333221111 111111111111 1112222 111 111134444444456688899999999999
Q ss_pred hHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhhhh
Q 019468 256 MKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSWAI 295 (340)
Q Consensus 256 ~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~~ 295 (340)
.+..+++++|+++|..|+|....-|..++..|+++..+.+
T Consensus 295 aRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 295 ARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred hHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 9999999999999999999999999999999999977665
No 25
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.62 E-value=6.4e-16 Score=133.74 Aligned_cols=260 Identities=15% Similarity=0.137 Sum_probs=175.5
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHH-HHhcCCCC-CCCCccchHHHHHHHHHHHHHhhhhhh
Q 019468 25 NIVSSVGIIMANKQLMSPSGLGFGFATTLTGFHFAVTALVGLV-SNATGYSN-SASIHVPFWELFWFSIVANTSISGMNF 102 (340)
Q Consensus 25 ~~~~s~~~~~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~-~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~ 102 (340)
.+.++..+.+..|.+..+ |..+...|++.-.++... ...++..- .+..++.| +.+.|.....+....|+
T Consensus 46 s~ff~~~~vv~t~~~e~~-------p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~--LiLRg~mG~tgvmlmyy 116 (346)
T KOG4510|consen 46 SYFFNSCMVVSTKVLEND-------PMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKW--LILRGFMGFTGVMLMYY 116 (346)
T ss_pred HHHHhhHHHhhhhhhccC-------hhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEE--EEeehhhhhhHHHHHHH
Confidence 344555555555544444 999999997766654333 22222111 11222222 34457877888888999
Q ss_pred hhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeec-----cc---------ccchhhHHHH
Q 019468 103 SLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVT-----DV---------KVNAKGFICA 168 (340)
Q Consensus 103 al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~-----~~---------~~~~~G~~l~ 168 (340)
|++|++.+.++++.+++|.||.+++++++||+.++.+.++..+.+.||+++..+ |. +-+.+|.+.+
T Consensus 117 a~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt~aa 196 (346)
T KOG4510|consen 117 ALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGTVAA 196 (346)
T ss_pred HHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCchHHH
Confidence 999999999999999999999999999999999999999999999999998643 21 1245788899
Q ss_pred HHHHHHHHHHHhhhccchhhcccccccchhhhHHHHhhhc---cCChhhHh-hhhchHHHHHHHHHHHHHHHHHHHhhcc
Q 019468 169 CVAVFSTSLQQIDMKPLVVRIHHCHRMTSNTSIGSLQKKY---SVGSFELL-SKTAPIQAVSLLVFAVFCNVSQYLCIGR 244 (340)
Q Consensus 169 l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 244 (340)
+.+++.-|...++-|++.++.|..--+.+.........-. ....+++- ..-..+-.+.+...++..++..-..+++
T Consensus 197 i~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfgfigQIllTm~lQi 276 (346)
T KOG4510|consen 197 ISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFGFIGQILLTMGLQI 276 (346)
T ss_pred HHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhhhHHHHHHHHHhhh
Confidence 9999999988998888888877543333333222110000 00000000 0000000111223566667666666655
Q ss_pred cchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhh
Q 019468 245 FSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSW 293 (340)
Q Consensus 245 ~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~ 293 (340)
-.+--.++..+..-+.+.+.-.++|||.++++.|.|+++++........
T Consensus 277 ErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~ 325 (346)
T KOG4510|consen 277 ERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVAL 325 (346)
T ss_pred hccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHH
Confidence 5555567888999999999999999999999999999999887666543
No 26
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.57 E-value=6.6e-14 Score=126.89 Aligned_cols=190 Identities=13% Similarity=0.055 Sum_probs=148.9
Q ss_pred HHHHHhhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeeccc--------ccchh
Q 019468 92 VANTSISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTDV--------KVNAK 163 (340)
Q Consensus 92 ~~~~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~--------~~~~~ 163 (340)
+-.+.++.+|.|+.|++++..+++.+++-+||.+++.++..||+++.|++++.+.++||++++.+|. +-...
T Consensus 168 lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~ll 247 (416)
T KOG2765|consen 168 LWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLL 247 (416)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhH
Confidence 3456778889999999999999999999999999999999999999999999999999999988743 12468
Q ss_pred hHHHHHHHHHHHHHHHhhhccchhhcccccccchhhhHHHHhhhccCChhhHhhhhchHHHHHHH---------------
Q 019468 164 GFICACVAVFSTSLQQIDMKPLVVRIHHCHRMTSNTSIGSLQKKYSVGSFELLSKTAPIQAVSLL--------------- 228 (340)
Q Consensus 164 G~~l~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~--------------- 228 (340)
|.++++++++.||+|.+.-||-..+.. .++|-...+.+...+.++.+-
T Consensus 248 G~llaL~sA~~YavY~vllk~~~~~eg-----------------~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~ 310 (416)
T KOG2765|consen 248 GNLLALLSALLYAVYTVLLKRKIGDEG-----------------ERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFE 310 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc-----------------ccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCccc
Confidence 999999999999999995554332111 123332222222222222211
Q ss_pred ---------------HHHHHHHHHHHHhhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhh
Q 019468 229 ---------------VFAVFCNVSQYLCIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSW 293 (340)
Q Consensus 229 ---------------~~~~~~~~~~~~~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~ 293 (340)
+..++.-++|.+..-.++|+...+...+..+++++...++=|.++|+.+++|.+.|++|.+..++
T Consensus 311 lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~ 390 (416)
T KOG2765|consen 311 LPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNI 390 (416)
T ss_pred CCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheec
Confidence 13445556667777889999999999999999999999988999999999999999999999887
Q ss_pred hhhhh
Q 019468 294 AIEAE 298 (340)
Q Consensus 294 ~~~~~ 298 (340)
..+..
T Consensus 391 ~~~~~ 395 (416)
T KOG2765|consen 391 SSENS 395 (416)
T ss_pred ccccc
Confidence 65543
No 27
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.54 E-value=1.9e-14 Score=125.22 Aligned_cols=245 Identities=18% Similarity=0.260 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HhcCCCCCCCCccchHHHHHHHHHHHHHhhhhhhhhcc-chhhHHHHHhhhhHHHHHHHHH
Q 019468 51 TTLTGFHFAVTALVGLVS-NATGYSNSASIHVPFWELFWFSIVANTSISGMNFSLML-NSVGFYQISKLSMIPVVCVMEW 128 (340)
Q Consensus 51 ~~l~~~r~~~~~l~l~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~-~~~~~~~~l~~~~Pi~~~ll~~ 128 (340)
..+++.|+++-..-.+.. ..... .+++.|.+.+...-..+...+..+|+|+++ +|.++..++++.+++.++++++
T Consensus 34 NLITFaqFlFia~eGlif~skf~~---~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~ 110 (330)
T KOG1583|consen 34 NLITFAQFLFIATEGLIFTSKFFT---VKPKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGW 110 (330)
T ss_pred eehHHHHHHHHHHhceeeeccccc---cCCCCchhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHH
Confidence 678999998777644443 22222 246778888888877788888899999988 7999999999999999999999
Q ss_pred HHhCcccChhhhHHHHHHhhhheeeeeccc---c--------------cc--hhhHHHHHHHHHHHHHHHhhhccchhhc
Q 019468 129 ILHGKKYSKEVKMAVVVVVVGVGVCTVTDV---K--------------VN--AKGFICACVAVFSTSLQQIDMKPLVVRI 189 (340)
Q Consensus 129 l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~---~--------------~~--~~G~~l~l~s~~~~a~~~v~~k~~~~~~ 189 (340)
+++|+|++.+|+.++.++.+|+++++..+. . +- ..|+.+...+.+..|.-.++++...++|
T Consensus 111 il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~ky 190 (330)
T KOG1583|consen 111 ILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKY 190 (330)
T ss_pred HhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999875321 0 11 2588888899999999999999998776
Q ss_pred --ccccccchhhhHH---------HH----hhhccCChhh--HhhhhchHHHHHHHHHHHH----HHHHHHHhhcccchh
Q 019468 190 --HHCHRMTSNTSIG---------SL----QKKYSVGSFE--LLSKTAPIQAVSLLVFAVF----CNVSQYLCIGRFSAV 248 (340)
Q Consensus 190 --~~~~~~~~~~~~~---------~l----~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~----~~~~~~~~l~~~~~~ 248 (340)
|+-|.+.+..+.. .+ .....-++.. ......|..+.-++ +..+ |-=.-|.+-.++++.
T Consensus 191 GKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl-~n~L~Qy~CikgVy~L~te~~sL 269 (330)
T KOG1583|consen 191 GKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLL-FNVLTQYFCIKGVYILTTETSSL 269 (330)
T ss_pred cCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHH-HHHHHHHHHHHhhhhhhceecce
Confidence 4666666443221 11 1000111000 01111122222221 1111 111225566789999
Q ss_pred HHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhhhhhhhh
Q 019468 249 TFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSWAIEAEK 299 (340)
Q Consensus 249 ~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~~~~~~ 299 (340)
+++++-+++.-++.++|.+.|.+++++..|+|..+++.|-++|.....+.+
T Consensus 270 TVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~~~ 320 (330)
T KOG1583|consen 270 TVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNHPK 320 (330)
T ss_pred EEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 999999999999999999999999999999999999999999986655443
No 28
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.54 E-value=3e-12 Score=116.28 Aligned_cols=278 Identities=12% Similarity=0.080 Sum_probs=181.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhcC--C-CCCCCCcc---------chH
Q 019468 17 SDVGAWGMNIVSSVGIIMANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSNATG--Y-SNSASIHV---------PFW 84 (340)
Q Consensus 17 ~~~~~~~~~~~~s~~~~~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~~~~--~-~~~~~~~~---------~~~ 84 (340)
.+.++++. .-.+++.+..|+.-..++..|- |.+..++-=++-.+++......+ . .+...+.. +..
T Consensus 17 ~~~l~~~t--~~~~~l~l~l~ys~~~~~~~f~-~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~l 93 (345)
T KOG2234|consen 17 YLSLIVLT--AQNTALTLLLRYSRTREKPMFL-PTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETL 93 (345)
T ss_pred HHHHHHHH--HHHhhHHHHHHHHhcCCCCCcc-hhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHH
Confidence 33444442 3345666777888776333344 77777776666666554433221 1 01001110 122
Q ss_pred HHHHHHHHHHHHhhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeec---c----
Q 019468 85 ELFWFSIVANTSISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVT---D---- 157 (340)
Q Consensus 85 ~~~~~~l~~~~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~---~---- 157 (340)
++..-+++++..+-+.+.++.+.+++++++.-.+..+.|+++..+++++|.+++||.++++.++|+.++..+ +
T Consensus 94 k~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~ 173 (345)
T KOG2234|consen 94 KVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAK 173 (345)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcc
Confidence 234446678888889999999999999999999999999999999999999999999999999999997621 1
Q ss_pred ----cccchhhHHHHHHHHHHHHHHHhhhccchhhcc-cccccch-----hh---hHHHHhh-hccCChhhHhhhhchHH
Q 019468 158 ----VKVNAKGFICACVAVFSTSLQQIDMKPLVVRIH-HCHRMTS-----NT---SIGSLQK-KYSVGSFELLSKTAPIQ 223 (340)
Q Consensus 158 ----~~~~~~G~~l~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~-----~~---~~~~l~~-~~~~~~~~~~~~~~~~~ 223 (340)
..-.+.|+...+.++++.++..+|-++++++-+ +.+.-+. .. +...+.. .........+...+...
T Consensus 174 ~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~v 253 (345)
T KOG2234|consen 174 SESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIV 253 (345)
T ss_pred CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHH
Confidence 112568999999999999999998888886533 2222221 11 1111111 11111111111112222
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhhhhhhh
Q 019468 224 AVSLLVFAVFCNVSQYLCIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSWAIEAE 298 (340)
Q Consensus 224 ~~~l~~~~~~~~~~~~~~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~~~~~ 298 (340)
++..+. .....+..-..+++.+-..-.....+..+++.+.|+.++|-++|....+|..+++..+.+|...+.+.
T Consensus 254 w~vVl~-~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 254 WLVVLL-NAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred HHHHHH-HhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 222211 11222222344666666666666777788999999999999999999999999999999999666554
No 29
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.54 E-value=2.3e-12 Score=113.96 Aligned_cols=255 Identities=12% Similarity=0.004 Sum_probs=166.9
Q ss_pred HHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHH-HHhcCCCCC--CCCccc--hHHHHHHHHHHHHHhhhhhhhhccch
Q 019468 34 MANKQLMSPSGLGFGFATTLTGFHFAVTALVGLV-SNATGYSNS--ASIHVP--FWELFWFSIVANTSISGMNFSLMLNS 108 (340)
Q Consensus 34 ~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~-~~~~~~~~~--~~~~~~--~~~~~~~~l~~~~~~~~~~~al~~~~ 108 (340)
+..|.+-. .+ +.++...|.+....+... +...|..+. ...+.| +......+++.+.+...+.+|...--
T Consensus 24 ~y~kll~~-----~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~ 97 (293)
T COG2962 24 LYFKLLEP-----LP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIGLNWWLFIWAVNNGH 97 (293)
T ss_pred HHHHHHcc-----CC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhheecCCCc
Confidence 44565443 67 899999999988775443 222222111 011222 22244445667777778889999988
Q ss_pred hhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeecccccchhhHHHHHHHHHHHHHHHhhhccchhh
Q 019468 109 VGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTDVKVNAKGFICACVAVFSTSLQQIDMKPLVVR 188 (340)
Q Consensus 109 ~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~l~l~s~~~~a~~~v~~k~~~~~ 188 (340)
+-.++.=-+..|++.++++.+|+|||+++.|+++++++.+||..-.....+++|..+. =+++|++|...-|++-
T Consensus 98 ~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~----la~sf~~Ygl~RK~~~-- 171 (293)
T COG2962 98 VLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALA----LALSFGLYGLLRKKLK-- 171 (293)
T ss_pred hhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHH----HHHHHHHHHHHHHhcC--
Confidence 8888888899999999999999999999999999999999999988877778776544 4578899998666552
Q ss_pred ccc-----ccccchhhhHHHHhhhccCChhhHhh--hhchHHHH-HHHHHHHHHHHHHHHhhcccchhHHHHHhhhHHHH
Q 019468 189 IHH-----CHRMTSNTSIGSLQKKYSVGSFELLS--KTAPIQAV-SLLVFAVFCNVSQYLCIGRFSAVTFQVLGHMKTVC 260 (340)
Q Consensus 189 ~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~-~l~~~~~~~~~~~~~~l~~~~~~~~si~~~~~~v~ 260 (340)
+++ .|.+...-..-.+.--.+.++. ... .......+ ...+.+...-.......++.+=.+.++..+++|..
T Consensus 172 v~a~~g~~lE~l~l~p~al~yl~~l~~~~~-~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl 250 (293)
T COG2962 172 VDALTGLTLETLLLLPVALIYLLFLADSGQ-FLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTL 250 (293)
T ss_pred CchHHhHHHHHHHHhHHHHHHHHHHhcCch-hhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 111 1111110000000000000110 000 00000011 11111111112223447889999999999999999
Q ss_pred HHHHHHHhhCccccccchhhhhHHhHhHHHHhhhhhhhhcC
Q 019468 261 ILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSWAIEAEKRK 301 (340)
Q Consensus 261 ~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~~~~~~~~ 301 (340)
..+++.+++||+++..+.+..+.+-.|+++|..+.-+++++
T Consensus 251 ~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r~ 291 (293)
T COG2962 251 MFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTARK 291 (293)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999877655433
No 30
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.54 E-value=6.3e-13 Score=116.05 Aligned_cols=268 Identities=18% Similarity=0.160 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHhhhcC---CCCCcchhHHHHHHHHHHHHHHHHHHH--hcC---CCCCC-------CCccchHH--HHHH
Q 019468 27 VSSVGIIMANKQLMSP---SGLGFGFATTLTGFHFAVTALVGLVSN--ATG---YSNSA-------SIHVPFWE--LFWF 89 (340)
Q Consensus 27 ~~s~~~~~~~k~~~~~---~~~g~~~p~~l~~~r~~~~~l~l~~~~--~~~---~~~~~-------~~~~~~~~--~~~~ 89 (340)
.+++..+++.||.-+- +.-||+.|..-+..-|+.-+++++.+. +.+ ..... ..+.|++. +++-
T Consensus 13 vsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~P 92 (372)
T KOG3912|consen 13 VSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPP 92 (372)
T ss_pred hhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecCh
Confidence 4445556788998552 445688787777766665444443322 211 00000 01113333 4555
Q ss_pred HHHHHHHhhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeeccc----------c
Q 019468 90 SIVANTSISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTDV----------K 159 (340)
Q Consensus 90 ~l~~~~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~----------~ 159 (340)
+++...+....|.++.+++++..++++....+||.+++.-+++++++.++|+++....+|++++...|. +
T Consensus 93 al~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s 172 (372)
T KOG3912|consen 93 ALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYS 172 (372)
T ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccc
Confidence 788888899999999999999999999999999999999999999999999999999999998765432 1
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhccchhh--cccccccchhhhHHHH-----h---------hhccCChhh-Hhhhh---
Q 019468 160 VNAKGFICACVAVFSTSLQQIDMKPLVVR--IHHCHRMTSNTSIGSL-----Q---------KKYSVGSFE-LLSKT--- 219 (340)
Q Consensus 160 ~~~~G~~l~l~s~~~~a~~~v~~k~~~~~--~~~~~~~~~~~~~~~l-----~---------~~~~~~~~~-~~~~~--- 219 (340)
--..|+.+.+.+-+.-|.+.++.+|.+++ ++|.++..|.+..+.. . +..+-+|-. .-.+.
T Consensus 173 ~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~ 252 (372)
T KOG3912|consen 173 SIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAF 252 (372)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHH
Confidence 23579999999999999999999998865 5688888776655411 0 111111111 00111
Q ss_pred -----chHHHHHHHH---HHHHHHHHHHHhhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHH
Q 019468 220 -----APIQAVSLLV---FAVFCNVSQYLCIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVY 291 (340)
Q Consensus 220 -----~~~~~~~l~~---~~~~~~~~~~~~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~ 291 (340)
.|.-.+.+.. --.+.|+......+..|+++=.+...++..+.-+++..+..|.+...|+.|+++.+.|.++|
T Consensus 253 ~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY 332 (372)
T KOG3912|consen 253 AALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILY 332 (372)
T ss_pred HHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111110 11134556666788899999999999999999999999999999999999999999999999
Q ss_pred hhh
Q 019468 292 SWA 294 (340)
Q Consensus 292 ~~~ 294 (340)
+..
T Consensus 333 ~~i 335 (372)
T KOG3912|consen 333 NQI 335 (372)
T ss_pred HHH
Confidence 743
No 31
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.49 E-value=1.9e-12 Score=115.30 Aligned_cols=200 Identities=12% Similarity=0.107 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeeccc-----
Q 019468 84 WELFWFSIVANTSISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTDV----- 158 (340)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~----- 158 (340)
.++..-++++...+.+.+.++++++++.++++..+..++|++++++++|+|.+++||+++.+.++|+.+...++.
T Consensus 18 ~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~ 97 (244)
T PF04142_consen 18 LKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDN 97 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccccc
Confidence 334444778999999999999999999999999999999999999999999999999999999999999754321
Q ss_pred ----c--------cchhhHHHHHHHHHHHHHHHhhhccchhhcc-cccccc-----hhhhHH---HHhh-hccCChhhHh
Q 019468 159 ----K--------VNAKGFICACVAVFSTSLQQIDMKPLVVRIH-HCHRMT-----SNTSIG---SLQK-KYSVGSFELL 216 (340)
Q Consensus 159 ----~--------~~~~G~~l~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~-----~~~~~~---~l~~-~~~~~~~~~~ 216 (340)
+ ....|+++.+.++++.++..++.+|++|+.+ +.+.-+ +..... ...+ ..+.......
T Consensus 98 ~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f 177 (244)
T PF04142_consen 98 SSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFF 177 (244)
T ss_pred ccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCch
Confidence 1 1358999999999999999999999997654 211111 111111 1111 1111111111
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHH
Q 019468 217 SKTAPIQAVSLLVFAVFCNVSQYLCIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVA 284 (340)
Q Consensus 217 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~li 284 (340)
.......+... .......+..-..+|+.+...=.....+.-+++.++++++||.++|....+|.+++
T Consensus 178 ~G~~~~~~~~i-~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 178 HGYSWWVWIVI-FLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred hhcchHHHHHH-HHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 11122222211 12223344444568889998888999999999999999999999999999998763
No 32
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.41 E-value=5.6e-14 Score=121.00 Aligned_cols=257 Identities=17% Similarity=0.170 Sum_probs=185.8
Q ss_pred HHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHHHHHH-HHHHHhcCCCCCCCCccchHHHHHHHHHHHHHhhhhhhhhcc
Q 019468 28 SSVGIIMANKQLMSPSGLGFGFATTLTGFHFAVTALV-GLVSNATGYSNSASIHVPFWELFWFSIVANTSISGMNFSLML 106 (340)
Q Consensus 28 ~s~~~~~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~-l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~ 106 (340)
|.++..+.+..+-+. |.+.|..-++..+..-.++ .....+++ + .-+..|++++.+++...-.+++...|+||
T Consensus 29 ~~t~~a~tss~la~k---~iN~Pt~QtFl~Y~LLalVY~~~~~fR~--~--~~~~~~~hYilla~~DVEaNy~vV~AyQy 101 (336)
T KOG2766|consen 29 LITSTAFTSSELARK---GINAPTSQTFLNYVLLALVYGPIMLFRR--K--YIKAKWRHYILLAFVDVEANYFVVKAYQY 101 (336)
T ss_pred HHHcchhhhHHHHhc---cCCCccHHHHHHHHHHHHHHhhHHHhhh--H--HHHHHHHHhhheeEEeecccEEEeeehhh
Confidence 344444556666654 4666888888888755554 33332222 1 23445778888888888888888999999
Q ss_pred chhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeeccc--------ccchhhHHHHHHHHHHHHHH
Q 019468 107 NSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTDV--------KVNAKGFICACVAVFSTSLQ 178 (340)
Q Consensus 107 ~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~--------~~~~~G~~l~l~s~~~~a~~ 178 (340)
++....+.+-+-..+.+++++|+|+|.|+++.+..++.+++.|++++.++|. +....|+++.++++-+||..
T Consensus 102 TsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVS 181 (336)
T KOG2766|consen 102 TSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVS 181 (336)
T ss_pred cchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeec
Confidence 9999999999999999999999999999999999999999999999887652 12458999999999999999
Q ss_pred HhhhccchhhcccccccchhhhHHHHh-------hhccCChhhHhhhhchHHHHHHHHHH-HHHHHHHHHhhcccchhHH
Q 019468 179 QIDMKPLVVRIHHCHRMTSNTSIGSLQ-------KKYSVGSFELLSKTAPIQAVSLLVFA-VFCNVSQYLCIGRFSAVTF 250 (340)
Q Consensus 179 ~v~~k~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~l~~~~~~~~ 250 (340)
|+..+.+.++-+-++.+...++.+.+. ++.+....+ +...........++ |+.+-..=.+++..|++..
T Consensus 182 Nv~EEflvkn~d~~elm~~lgLfGaIIsaIQ~i~~~~~~~tl~---w~~~i~~yl~f~L~MFllYsl~pil~k~~~aT~~ 258 (336)
T KOG2766|consen 182 NVSEEFLVKNADRVELMGFLGLFGAIISAIQFIFERHHVSTLH---WDSAIFLYLRFALTMFLLYSLAPILIKTNSATMF 258 (336)
T ss_pred cccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhhccceeeEe---ehHHHHHHHHHHHHHHHHHHhhHHheecCCceEE
Confidence 999999999988888887666554432 222221110 00000000001111 1112222245788899988
Q ss_pred HHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhhhhh
Q 019468 251 QVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSWAIE 296 (340)
Q Consensus 251 si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~~~ 296 (340)
.+.-......++++ ..||-+++|.-.+.++.+..|.++|..+++
T Consensus 259 nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~ 302 (336)
T KOG2766|consen 259 NLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREK 302 (336)
T ss_pred EhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecccc
Confidence 88888889999888 788989999999999999999999964443
No 33
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.37 E-value=4.9e-12 Score=104.78 Aligned_cols=130 Identities=25% Similarity=0.399 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHHHHHHhhhccchhhc-------ccccccchhhhHHH--------HhhhccCChhhHhhh--------hc
Q 019468 164 GFICACVAVFSTSLQQIDMKPLVVRI-------HHCHRMTSNTSIGS--------LQKKYSVGSFELLSK--------TA 220 (340)
Q Consensus 164 G~~l~l~s~~~~a~~~v~~k~~~~~~-------~~~~~~~~~~~~~~--------l~~~~~~~~~~~~~~--------~~ 220 (340)
|+++++.|+++.|+++++.|+.+++. ++.+++.+...... +.|+.+......... ..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 78999999999999999999998653 24444443332221 112222111111000 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhh
Q 019468 221 PIQAVSLLVFAVFCNVSQYLCIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSW 293 (340)
Q Consensus 221 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~ 293 (340)
....+....++++.|++.++.++++||+++++.+.+|.+..+++|++++||+++..+++|+++.+.|+++|++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 1122223346778999999999999999999999999999999999999999999999999999999999975
No 34
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.22 E-value=4.9e-11 Score=94.75 Aligned_cols=114 Identities=13% Similarity=0.250 Sum_probs=91.3
Q ss_pred HHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHH-hcCCCC-CCCCccchHHHHHHHHH-HHHHhhhhhhhhccchhh
Q 019468 34 MANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSN-ATGYSN-SASIHVPFWELFWFSIV-ANTSISGMNFSLMLNSVG 110 (340)
Q Consensus 34 ~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~-~~~~~~-~~~~~~~~~~~~~~~l~-~~~~~~~~~~al~~~~~~ 110 (340)
..+|...++ ++ |....++|+..+.+ +..+. ..+..+ ...+...+......++. ......+++.++++++++
T Consensus 8 ~~~k~~~~~----~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 81 (126)
T PF00892_consen 8 VFSKKLLKK----IS-PLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISAS 81 (126)
T ss_pred HHHHHHhcc----CC-HHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchh
Confidence 468999998 88 99999999999986 33322 222111 11333445555666665 578888999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheee
Q 019468 111 FYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVC 153 (340)
Q Consensus 111 ~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~ 153 (340)
.++.+.++.|+++.+++++++||+++++++++++++++|+.++
T Consensus 82 ~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 82 IVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998764
No 35
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.04 E-value=6e-10 Score=98.27 Aligned_cols=184 Identities=13% Similarity=0.100 Sum_probs=125.8
Q ss_pred chhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeecc-------------------c--------c
Q 019468 107 NSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTD-------------------V--------K 159 (340)
Q Consensus 107 ~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~-------------------~--------~ 159 (340)
++++.....++..++++++.++.+.+||++..|+++.++...|+.....+| . +
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 567888899999999999999999999999999999999999987422111 0 1
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhccchhhcccc------cccchhhhHHH---HhhhccC-ChhhHhhhhchHHHHHHHH
Q 019468 160 VNAKGFICACVAVFSTSLQQIDMKPLVVRIHHC------HRMTSNTSIGS---LQKKYSV-GSFELLSKTAPIQAVSLLV 229 (340)
Q Consensus 160 ~~~~G~~l~l~s~~~~a~~~v~~k~~~~~~~~~------~~~~~~~~~~~---l~~~~~~-~~~~~~~~~~~~~~~~l~~ 229 (340)
..+.|....+.+..+.++..++.++..++++.. .+-.+...... ...+.+. ..... ....+........
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 160 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGF-FIGYPTAVWIVGL 160 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCc-ccCCchHHHHHHH
Confidence 245778888888888889999998887654321 00001101000 0000000 00000 0001111122222
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHH
Q 019468 230 FAVFCNVSQYLCIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVY 291 (340)
Q Consensus 230 ~~~~~~~~~~~~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~ 291 (340)
.......+..+.+++.++++.+++..++++++.++|+++|||+++..+++|..+++.|+++|
T Consensus 161 ~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 161 LNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 33344455678899999999999999999999999999999999999999999999998765
No 36
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.00 E-value=1.3e-09 Score=85.57 Aligned_cols=104 Identities=13% Similarity=0.216 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHh-cCCCCC---CCCccchHHHHHHHHHHH-HHhhhhhhhhccchhhHHHHHhhhhHHHHHHHHHH
Q 019468 55 GFHFAVTALVGLVSNA-TGYSNS---ASIHVPFWELFWFSIVAN-TSISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWI 129 (340)
Q Consensus 55 ~~r~~~~~l~l~~~~~-~~~~~~---~~~~~~~~~~~~~~l~~~-~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l 129 (340)
.+|++.+.+.+..... .+..+. ..+++++......|+... ....++++|+++.| +.++.+.++.|+++++++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 4788888776555322 221110 122344554555566654 78889999999999 68899999999999999999
Q ss_pred HhCcccChhhhHHHHHHhhhheeeeecccc
Q 019468 130 LHGKKYSKEVKMAVVVVVVGVGVCTVTDVK 159 (340)
Q Consensus 130 ~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~ 159 (340)
++|||++++++++++++++|++++..+|.+
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999998876643
No 37
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.00 E-value=6.3e-09 Score=80.86 Aligned_cols=117 Identities=12% Similarity=0.052 Sum_probs=95.2
Q ss_pred HHHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHH-hcCCCCCC--CCccchHHHHHHHHHHHHHhhhhhhhhccchh
Q 019468 33 IMANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSN-ATGYSNSA--SIHVPFWELFWFSIVANTSISGMNFSLMLNSV 109 (340)
Q Consensus 33 ~~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~-~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~ 109 (340)
.++.|..+++ .+ |.+-+..|-+....++.... ..+..+.. ..++.|-....-|+..+.+..+++.|++...+
T Consensus 19 ~iF~KIGl~~----vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf~ALk~G~a 93 (140)
T COG2510 19 PIFAKIGLEG----VD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYFRALKKGKA 93 (140)
T ss_pred HHHHHHhccc----cC-ccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHHHHHHhcCCc
Confidence 3568999998 88 99999999998877665543 34433321 13334444445566778888899999999999
Q ss_pred hHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeee
Q 019468 110 GFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCT 154 (340)
Q Consensus 110 ~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~ 154 (340)
|...-+-.++|+++++++++++|||++..+++++.++.+|+.+++
T Consensus 94 s~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 94 SRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred ceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 999999999999999999999999999999999999999998875
No 38
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.70 E-value=6.4e-08 Score=80.88 Aligned_cols=210 Identities=12% Similarity=0.083 Sum_probs=137.1
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeecccc--c
Q 019468 83 FWELFWFSIVANTSISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTDVK--V 160 (340)
Q Consensus 83 ~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~--~ 160 (340)
+.+..+.+++-.+.++.+..|++.++++.++.+.+|.-.|+.+++++++|+|+...+.++.++++.|++++...|.. .
T Consensus 53 ~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~ 132 (290)
T KOG4314|consen 53 FIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHAD 132 (290)
T ss_pred eeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhh
Confidence 34455666677778889999999999999999999999999999999999999999999999999999999987764 4
Q ss_pred chhhHHHHHHHHHHHHHHHhhhccchhhccc------ccccchhhhH-----HHHhhhccCChhhHhhhhchHHHHHHH-
Q 019468 161 NAKGFICACVAVFSTSLQQIDMKPLVVRIHH------CHRMTSNTSI-----GSLQKKYSVGSFELLSKTAPIQAVSLL- 228 (340)
Q Consensus 161 ~~~G~~l~l~s~~~~a~~~v~~k~~~~~~~~------~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~l~- 228 (340)
++.|+.++..|+...|+|-+.-|+...+-+- ...+.+..+. ..+..-.+.+.++..++ .|++-+.-.
T Consensus 133 e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~-~PWG~l~G~A 211 (290)
T KOG4314|consen 133 EIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAA-APWGCLCGAA 211 (290)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhh-CCchhhhhHH
Confidence 7899999999999999999977765532210 0001000000 00000001111111111 111111100
Q ss_pred HHHHHHHHHHHHhhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhh
Q 019468 229 VFAVFCNVSQYLCIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSW 293 (340)
Q Consensus 229 ~~~~~~~~~~~~~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~ 293 (340)
.+....|+.....+....|...|+-....-+.......++-+-..+...+.|..++..|.++...
T Consensus 212 ~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiii 276 (290)
T KOG4314|consen 212 GLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIII 276 (290)
T ss_pred HHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheec
Confidence 01122233333344555566666555555555566666655556788899999999999888654
No 39
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.69 E-value=4e-07 Score=81.99 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=84.0
Q ss_pred HHHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccchHHHHHHHHH-HHHHhhhhhhhhccchhhH
Q 019468 33 IMANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSNATGYSNSASIHVPFWELFWFSIV-ANTSISGMNFSLMLNSVGF 111 (340)
Q Consensus 33 ~~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~al~~~~~~~ 111 (340)
.+..|...++ .+.+ +.....+|+..+.+++.........+...+...+...+..+++ ......++++++++.+++.
T Consensus 144 ~~~~k~~~~~--~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 220 (260)
T TIGR00950 144 TVLYKRLVKK--EGPE-LLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSA 220 (260)
T ss_pred HHHHhHHhhc--CCch-HHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH
Confidence 3567887776 3333 4556667888888766554332211211222233334545554 4567788999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhh
Q 019468 112 YQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGV 150 (340)
Q Consensus 112 ~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv 150 (340)
++.+.++.|++++++++++++|++++.++++..++++|+
T Consensus 221 ~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 221 ASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999986
No 40
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.50 E-value=1.2e-05 Score=72.06 Aligned_cols=202 Identities=16% Similarity=0.143 Sum_probs=129.6
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhccchhhHHHHH-hhhhHHHHHHHHHHHhCcccChhhh----HHHHHHhhhheeeeecc
Q 019468 83 FWELFWFSIVANTSISGMNFSLMLNSVGFYQIS-KLSMIPVVCVMEWILHGKKYSKEVK----MAVVVVVVGVGVCTVTD 157 (340)
Q Consensus 83 ~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~l-~~~~Pi~~~ll~~l~~~e~~~~~~~----~~l~l~~~Gv~l~~~~~ 157 (340)
+..-+..|++-+.++..++.|++++++|.+.=+ ....-+.+.+.++++++|-.+..++ ++++++++|+.+.+..|
T Consensus 45 ~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~ 124 (269)
T PF06800_consen 45 FIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQD 124 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccc
Confidence 443455678888999999999999998876433 4566678999999999998887665 48889999999987654
Q ss_pred cc--------cchhhHHHHHHHHHHHHHHHhhhccchhhcccccccch---hhhHHHHhhhc--cCChhhHhhhhchHHH
Q 019468 158 VK--------VNAKGFICACVAVFSTSLQQIDMKPLVVRIHHCHRMTS---NTSIGSLQKKY--SVGSFELLSKTAPIQA 224 (340)
Q Consensus 158 ~~--------~~~~G~~l~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~---~~~~~~l~~~~--~~~~~~~~~~~~~~~~ 224 (340)
.+ ....|+...+.+.+.|..|.+..|... .++.....- .++.....-.. +....+-..+.+..+.
T Consensus 125 ~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~~--~~~~~~~lPqaiGm~i~a~i~~~~~~~~~~~k~~~~nil~G 202 (269)
T PF06800_consen 125 KKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAFH--VSGWSAFLPQAIGMLIGAFIFNLFSKKPFFEKKSWKNILTG 202 (269)
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHHHHhcC--CChhHhHHHHHHHHHHHHHHHhhcccccccccchHHhhHHH
Confidence 32 124699999999999999999655421 111111110 00000000000 0000000001110000
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhHHHHHhhhHHHHHHHHHHHhhCcccccc----chhhhhHHhHhHHH
Q 019468 225 VSLLVFAVFCNVSQYLCIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVK----NILGMTVAVLGMIV 290 (340)
Q Consensus 225 ~~l~~~~~~~~~~~~~~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~----~~iG~~lil~Gv~l 290 (340)
+ +=...|+..+...++.+..+.-.+.-+..+++.+.|.++++|+=+.. .++|.++++.|..+
T Consensus 203 ~----~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 203 L----IWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred H----HHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 0 11123455556677888888888888889999999999999997765 55788888877654
No 41
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.44 E-value=7.3e-07 Score=69.48 Aligned_cols=123 Identities=18% Similarity=0.175 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHHHHhhhccchhhcccccccchhhhH------------HHHhhhccCChhhHhhhhchHHHHHHHHHH
Q 019468 164 GFICACVAVFSTSLQQIDMKPLVVRIHHCHRMTSNTSI------------GSLQKKYSVGSFELLSKTAPIQAVSLLVFA 231 (340)
Q Consensus 164 G~~l~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (340)
..++++++++++++..++.|-...+.+|-..+..-+.. ++.+.....++-...+ .......+
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lf------lilSGla~ 77 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLF------LILSGLAG 77 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehh------hhHHHHHH
Confidence 36889999999999999998887777664443321111 1111100111111100 01111234
Q ss_pred HHHHHHHHHhhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHh
Q 019468 232 VFCNVSQYLCIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYS 292 (340)
Q Consensus 232 ~~~~~~~~~~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~ 292 (340)
....+++|..++.-.+....-.+-+.+++++++|++++||++|..+++|++++.+|..+..
T Consensus 78 glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 78 GLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 4556677888999999888899999999999999999999999999999999999987653
No 42
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.39 E-value=1.1e-06 Score=69.37 Aligned_cols=117 Identities=16% Similarity=0.266 Sum_probs=81.3
Q ss_pred HHHHHHHhhhccchhhcccccccchhhhHHH-------HhhhccCChhhHhhhhchHHHHHHHHH-HHHHHHHHHHhhcc
Q 019468 173 FSTSLQQIDMKPLVVRIHHCHRMTSNTSIGS-------LQKKYSVGSFELLSKTAPIQAVSLLVF-AVFCNVSQYLCIGR 244 (340)
Q Consensus 173 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~l~~ 244 (340)
++||.+.+..|+..++.++.....+...... ..++.+...... ...........+ ....+...++.+++
T Consensus 1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~ 77 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGILLILLLILGRKPFKNLSP---RQWLWLLFLGLLGTALAYLLYFYALKY 77 (126)
T ss_pred ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhhccccccCCCh---hhhhhhhHhhccceehHHHHHHHHHHh
Confidence 4688889999998888887665554333322 111111011000 000111111112 35567777888999
Q ss_pred cchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHh
Q 019468 245 FSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYS 292 (340)
Q Consensus 245 ~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~ 292 (340)
.++...++...++|+++.++++++++|++++.+++|+++++.|+++.+
T Consensus 78 ~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 78 ISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998764
No 43
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.34 E-value=3.7e-06 Score=65.63 Aligned_cols=63 Identities=13% Similarity=-0.036 Sum_probs=58.1
Q ss_pred HHHHHhhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeee
Q 019468 92 VANTSISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCT 154 (340)
Q Consensus 92 ~~~~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~ 154 (340)
.+.....++..+++.+|.+.+..+.++.++++++++++++|||+++++++++.++++|++++.
T Consensus 46 ~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 46 CLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 456677888999999999999999999999999999999999999999999999999997653
No 44
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.27 E-value=8.7e-06 Score=76.82 Aligned_cols=118 Identities=14% Similarity=0.127 Sum_probs=81.7
Q ss_pred HHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHH-hcCCCCCCC--CccchH--HHHHHHHHHHHHhhhhhhhhccch
Q 019468 34 MANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSN-ATGYSNSAS--IHVPFW--ELFWFSIVANTSISGMNFSLMLNS 108 (340)
Q Consensus 34 ~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~-~~~~~~~~~--~~~~~~--~~~~~~l~~~~~~~~~~~al~~~~ 108 (340)
+..|...+. ++.+...++++++++.+...... .....+... ...+.. ..+..++...+...++++++++.+
T Consensus 206 il~~~~~~~----~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t~lay~lw~~~v~~~g 281 (358)
T PLN00411 206 ILQAHIMSE----YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIITSVYYVIHSWTVRHKG 281 (358)
T ss_pred HHHHHHHHH----cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 345655555 65355777788877766443222 211111000 011111 122234444456678899999999
Q ss_pred hhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeee
Q 019468 109 VGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTV 155 (340)
Q Consensus 109 ~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~ 155 (340)
++.+++..+..|++++++++++++|++++.++++.+++++|+.++..
T Consensus 282 a~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 282 PLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMW 328 (358)
T ss_pred chHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998764
No 45
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.25 E-value=2.4e-05 Score=62.66 Aligned_cols=117 Identities=17% Similarity=0.180 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhccchhhcccccccchhhhHHHHhhhccCChhh---HhhhhchHHHHHH-HHHHHHHHHHH
Q 019468 163 KGFICACVAVFSTSLQQIDMKPLVVRIHHCHRMTSNTSIGSLQKKYSVGSFE---LLSKTAPIQAVSL-LVFAVFCNVSQ 238 (340)
Q Consensus 163 ~G~~l~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~l-~~~~~~~~~~~ 238 (340)
.|+++.+.+.++.+...+.-|+-+++.+..+ .+... .....+|...+.+ +.+.....+.+
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~----------------~~~~~~~~~~~~~~p~~~i~lgl~~~~la~~~w 65 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLS----------------HAWDFIAALLAFGLALRAVLLGLAGYALSMLCW 65 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCcc----------------chhHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3778889999998888885554432221100 00000 0111122112222 22344556677
Q ss_pred HHhhcccchhHHHHHhhhHHHHHHHHHHH--hhCccccccchhhhhHHhHhHHHHhhhh
Q 019468 239 YLCIGRFSAVTFQVLGHMKTVCILTLGWL--LFDSQLTVKNILGMTVAVLGMIVYSWAI 295 (340)
Q Consensus 239 ~~~l~~~~~~~~si~~~~~~v~~~~~s~~--l~ge~~s~~~~iG~~lil~Gv~l~~~~~ 295 (340)
...+++.+...+..+....++...+.++. ++||++|+.+++|++++++|+++.++.+
T Consensus 66 ~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 66 LKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 78899999999888888888777777775 8999999999999999999999987533
No 46
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.20 E-value=1.6e-05 Score=73.10 Aligned_cols=70 Identities=11% Similarity=0.134 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeee
Q 019468 86 LFWFSIVANTSISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTV 155 (340)
Q Consensus 86 ~~~~~l~~~~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~ 155 (340)
.+..++.....+.++++++++.|++.++.+.+..|++.+++++++++|+++..++++.++++.|+.+...
T Consensus 218 l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 218 LLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 3444444556788899999999999999999999999999999999999999999999999999877643
No 47
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.19 E-value=2.8e-05 Score=71.51 Aligned_cols=115 Identities=11% Similarity=-0.025 Sum_probs=78.1
Q ss_pred HHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccchHHHHHHHHH-HHHHhhhhhhhhccchhhHH
Q 019468 34 MANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSNATGYSNSASIHVPFWELFWFSIV-ANTSISGMNFSLMLNSVGFY 112 (340)
Q Consensus 34 ~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~al~~~~~~~~ 112 (340)
+..|...++ .+ |..... ..+++.+++.........+.......+...+.+++. ......++++++++++++.+
T Consensus 165 v~~r~~~~~----~~-~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~a 238 (293)
T PRK10532 165 LSGQRAGAE----HG-PATVAI-GSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTF 238 (293)
T ss_pred HHHHHHhcc----CC-chHHHH-HHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHH
Confidence 445666555 55 666544 444444433332222111100111112223455664 34566788999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeee
Q 019468 113 QISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCT 154 (340)
Q Consensus 113 ~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~ 154 (340)
+.+.++.|++..++++++++|+++..++++.+++++|+....
T Consensus 239 s~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~ 280 (293)
T PRK10532 239 GTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST 280 (293)
T ss_pred HHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987754
No 48
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.16 E-value=2.6e-05 Score=71.82 Aligned_cols=132 Identities=10% Similarity=0.060 Sum_probs=89.3
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhccchhhcccccccchhhhHHHH------hhhccCChhhH-h-hhhchHHHHHHHHHH
Q 019468 160 VNAKGFICACVAVFSTSLQQIDMKPLVVRIHHCHRMTSNTSIGSL------QKKYSVGSFEL-L-SKTAPIQAVSLLVFA 231 (340)
Q Consensus 160 ~~~~G~~l~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~l------~~~~~~~~~~~-~-~~~~~~~~~~l~~~~ 231 (340)
....|.++.++++++|+...+..|.. .+++|.+...+-...+.. ..+.+...... . ...............
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLI 83 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 34679999999999999999999765 557765555432222110 00001000000 0 000000011111123
Q ss_pred HHHHHHHHHhhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHh
Q 019468 232 VFCNVSQYLCIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYS 292 (340)
Q Consensus 232 ~~~~~~~~~~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~ 292 (340)
...+.+.++.+++.++..+++..+..|++..++++++++|+++..+++|+++.+.|+.+..
T Consensus 84 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 84 GGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 3456777889999999999999999999999999999999999999999999999998764
No 49
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.16 E-value=3.1e-05 Score=71.16 Aligned_cols=107 Identities=16% Similarity=0.099 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHh-cCCCC-CCCCccchHHHHHHHHH-HHHHhhhhhhhhccchhhHHHHHhhhhHHHHHHH
Q 019468 50 ATTLTGFHFAVTALVGLVSNA-TGYSN-SASIHVPFWELFWFSIV-ANTSISGMNFSLMLNSVGFYQISKLSMIPVVCVM 126 (340)
Q Consensus 50 p~~l~~~r~~~~~l~l~~~~~-~~~~~-~~~~~~~~~~~~~~~l~-~~~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll 126 (340)
+...+.+++.++.+++..+.. ..... ..++...+......++. ......++++++++.+++.++.+.++.|++.+++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~ 256 (292)
T PRK11272 177 GMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLL 256 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 455677888888775544332 22111 00111224344555554 4567778999999999999999999999999999
Q ss_pred HHHHhCcccChhhhHHHHHHhhhheeeeec
Q 019468 127 EWILHGKKYSKEVKMAVVVVVVGVGVCTVT 156 (340)
Q Consensus 127 ~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~ 156 (340)
++++++|+++..++++.+++++|+.+....
T Consensus 257 ~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 257 GTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999876543
No 50
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.02 E-value=0.00011 Score=67.59 Aligned_cols=68 Identities=9% Similarity=0.154 Sum_probs=60.6
Q ss_pred HHHHH-HHHHHhhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeee
Q 019468 87 FWFSI-VANTSISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCT 154 (340)
Q Consensus 87 ~~~~l-~~~~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~ 154 (340)
.+.|+ .+.++..+...|+.+.|.+..+-+.+..-++.++++..++|||++++++.+..++++|..++.
T Consensus 53 W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 53 WWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 33444 466777888999999999999999999999999999999999999999999999999998754
No 51
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.97 E-value=8.8e-05 Score=66.74 Aligned_cols=129 Identities=12% Similarity=0.128 Sum_probs=85.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhccchhhcccccccchhhhHHH--------Hhhh-ccC-ChhhHh-hhhchHHHHHHHHHH
Q 019468 163 KGFICACVAVFSTSLQQIDMKPLVVRIHHCHRMTSNTSIGS--------LQKK-YSV-GSFELL-SKTAPIQAVSLLVFA 231 (340)
Q Consensus 163 ~G~~l~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~--------l~~~-~~~-~~~~~~-~~~~~~~~~~l~~~~ 231 (340)
.|.++.++++++|+...+..|. ..+.+|.+...+=...+. ..++ .+. ...... .............+.
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 80 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLI 80 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 4889999999999999999997 345666554442221111 0000 000 000000 000000111111234
Q ss_pred HHHHHHHHHhhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHh
Q 019468 232 VFCNVSQYLCIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYS 292 (340)
Q Consensus 232 ~~~~~~~~~~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~ 292 (340)
...+.+.++.++++++.++++.....|+++.++++++++|+++..+++|.++.+.|+.+..
T Consensus 81 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 81 GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 4556677788999999999999999999999999999999999999999999999988654
No 52
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.95 E-value=8.8e-05 Score=67.74 Aligned_cols=124 Identities=9% Similarity=-0.031 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhcccccccchhhhHHH-----H-h-h--hccCChhhHhhhhchHHHHHHHHHHHHHH
Q 019468 165 FICACVAVFSTSLQQIDMKPLVVRIHHCHRMTSNTSIGS-----L-Q-K--KYSVGSFELLSKTAPIQAVSLLVFAVFCN 235 (340)
Q Consensus 165 ~~l~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~-----l-~-~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (340)
+.+.+.+++++|..++.+|+...+.++.. .+...... + . + +.+..+...... .-...........+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 77 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPDFL--WWALLAHSVLLTPYGLWYLAQVGWSRLPATFW---LLLAISAVANMVYF 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhHHH--HHHHHHHHHHHHHHHHHhcccCCCCCcchhhH---HHHHHHHHHHHHHH
Confidence 57889999999999999998776544321 11111100 0 0 0 111111100000 01111112344455
Q ss_pred HHHHHhhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhh
Q 019468 236 VSQYLCIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSW 293 (340)
Q Consensus 236 ~~~~~~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~ 293 (340)
.+.+...++.++...+++.+..|+++.+++++++||+++..+++|+++++.|+.+...
T Consensus 78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 6667778999999999999999999999999999999999999999999999988653
No 53
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.84 E-value=0.00037 Score=54.32 Aligned_cols=59 Identities=10% Similarity=0.135 Sum_probs=51.7
Q ss_pred HHHHHHHhhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHh
Q 019468 234 CNVSQYLCIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYS 292 (340)
Q Consensus 234 ~~~~~~~~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~ 292 (340)
..++....+++.+...+...-.+.++.+.+.|+++|||+++..+++|+++++.|+.+..
T Consensus 50 ~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 50 AMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 44455567888988888888889999999999999999999999999999999998764
No 54
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.78 E-value=0.0005 Score=63.35 Aligned_cols=74 Identities=11% Similarity=0.015 Sum_probs=62.9
Q ss_pred hHHHHHHHHH-HHHHhhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeec
Q 019468 83 FWELFWFSIV-ANTSISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVT 156 (340)
Q Consensus 83 ~~~~~~~~l~-~~~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~ 156 (340)
+...+.++++ ......+++.++++.+++.++.+....|++..++++++++|+++..++++.+++++|+.+...+
T Consensus 214 ~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 214 ILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 4444555554 4457778899999999999999999999999999999999999999999999999999876543
No 55
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.75 E-value=0.001 Score=54.66 Aligned_cols=120 Identities=13% Similarity=0.087 Sum_probs=86.4
Q ss_pred HHHHhhhcC---CCCCcchhHHHHHHHHHHHHHHHHHHHh-cCCCCCC-----CC------c-cchHHHHHHHHHHHHHh
Q 019468 34 MANKQLMSP---SGLGFGFATTLTGFHFAVTALVGLVSNA-TGYSNSA-----SI------H-VPFWELFWFSIVANTSI 97 (340)
Q Consensus 34 ~~~k~~~~~---~~~g~~~p~~l~~~r~~~~~l~l~~~~~-~~~~~~~-----~~------~-~~~~~~~~~~l~~~~~~ 97 (340)
...|..+++ .+.+.+ |..+....-..+.+++..... .+..+.. .. . ..+......++.....+
T Consensus 17 v~~~~~~~~~~~~~~~~~-~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 95 (153)
T PF03151_consen 17 VLIKKLLKKVSSNSKKLN-PLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSGLLAFLYN 95 (153)
T ss_pred HHHHHHHhcccccccCCC-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 345665555 123577 888888888877776544322 2211100 00 1 11222344456667788
Q ss_pred hhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeee
Q 019468 98 SGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCT 154 (340)
Q Consensus 98 ~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~ 154 (340)
...+..++++++-..+++.....+.+.+++.++++|+++..++.|+.++++|+.+-+
T Consensus 96 ~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 96 LSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 888999999999999999999999999999999999999999999999999998653
No 56
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.75 E-value=0.00012 Score=58.67 Aligned_cols=71 Identities=10% Similarity=0.047 Sum_probs=61.9
Q ss_pred HHHHH-HHHHHhhhhhhhhccchhhHHHHHhhhhHHHHHHHHHH--HhCcccChhhhHHHHHHhhhheeeeecc
Q 019468 87 FWFSI-VANTSISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWI--LHGKKYSKEVKMAVVVVVVGVGVCTVTD 157 (340)
Q Consensus 87 ~~~~l-~~~~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l--~~~e~~~~~~~~~l~l~~~Gv~l~~~~~ 157 (340)
...|+ .+.....+++++++..|++.+.-+.+..+.++++.++. +++|++++.++++++++++|+.++..++
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 44455 56778889999999999999999999999888888885 8999999999999999999999876543
No 57
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.67 E-value=0.00023 Score=65.68 Aligned_cols=119 Identities=13% Similarity=0.028 Sum_probs=80.5
Q ss_pred HHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHH-HhcCCCCCCCC---c----cchHHHH----HHHH-HHHHHhhhh
Q 019468 34 MANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVS-NATGYSNSASI---H----VPFWELF----WFSI-VANTSISGM 100 (340)
Q Consensus 34 ~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~-~~~~~~~~~~~---~----~~~~~~~----~~~l-~~~~~~~~~ 100 (340)
+..|...++ .+++ |..++.+++..+.+.+... ...+..+.... . ....... ..+. .....+.+.
T Consensus 162 v~~k~~~~~--~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (302)
T TIGR00817 162 IFSKKAMTI--KSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVA 238 (302)
T ss_pred HHHHHhhcc--CCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 456666663 2377 8999999998887754443 22221110000 0 0111111 1122 222233455
Q ss_pred hhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeee
Q 019468 101 NFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTV 155 (340)
Q Consensus 101 ~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~ 155 (340)
+.+++++++..+++.....|+++.++++++++|+++..+++|.+++++|+.+...
T Consensus 239 ~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 239 FMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999987653
No 58
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.64 E-value=0.00021 Score=56.32 Aligned_cols=71 Identities=11% Similarity=0.080 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhhhhhhhhccchhhHHHHHh-hhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeec
Q 019468 86 LFWFSIVANTSISGMNFSLMLNSVGFYQISK-LSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVT 156 (340)
Q Consensus 86 ~~~~~l~~~~~~~~~~~al~~~~~~~~~~l~-~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~ 156 (340)
.....+++....++...+++++|.+.+..+- ...-+.+++++.++++|++++.+++++.++++|+..+...
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 3444557778888999999999999998885 6889999999999999999999999999999999887553
No 59
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.54 E-value=0.002 Score=58.31 Aligned_cols=75 Identities=15% Similarity=0.226 Sum_probs=65.0
Q ss_pred cchHHHHHHHHHHH-HHhhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeee
Q 019468 81 VPFWELFWFSIVAN-TSISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTV 155 (340)
Q Consensus 81 ~~~~~~~~~~l~~~-~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~ 155 (340)
..+......++... ....+++++++..+++..+.+..+.|++.+++++++++|+++..++++.++++.|+.+...
T Consensus 212 ~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~ 287 (292)
T COG0697 212 RAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL 287 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 34555566666655 5888999999999999999999999999999999999999999999999999999887654
No 60
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.45 E-value=0.0013 Score=58.83 Aligned_cols=131 Identities=15% Similarity=0.155 Sum_probs=82.1
Q ss_pred chhhHHHHHHHHHHHHHHHhhhccchhhccccccc----chhhhHH----HHhhhccCChhhHhhhhchHHHHHHHHHHH
Q 019468 161 NAKGFICACVAVFSTSLQQIDMKPLVVRIHHCHRM----TSNTSIG----SLQKKYSVGSFELLSKTAPIQAVSLLVFAV 232 (340)
Q Consensus 161 ~~~G~~l~l~s~~~~a~~~v~~k~~~~~~~~~~~~----~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (340)
+..|+++++.+-+.|+....|.|-+- ..++.|.. .|....- ...++ ..+..+ ....|-........+.
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll~-~~~~~eIlahRviwS~~~~l~ll~~~r~-~~~~~~--~~~~p~~~~~~~l~a~ 80 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLLE-PLPATEILAHRVIWSFPFMLALLFLLRQ-WRELKQ--LLKQPKTLLMLALTAL 80 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHH--HHhCcHHHHHHHHHHH
Confidence 45799999999999999988777542 22222222 2221110 00000 000000 1111212222222222
Q ss_pred H--HHHHH-HHhhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhhhh
Q 019468 233 F--CNVSQ-YLCIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSWAI 295 (340)
Q Consensus 233 ~--~~~~~-~~~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~~ 295 (340)
. .|... .|...+-....+|.--+++|.+.+++|.++++|+++..|++...+..+|+....+..
T Consensus 81 li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~ 146 (293)
T COG2962 81 LIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL 146 (293)
T ss_pred HHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 2 23333 367788889999999999999999999999999999999999999999998865544
No 61
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=97.42 E-value=0.00082 Score=52.54 Aligned_cols=62 Identities=16% Similarity=0.420 Sum_probs=53.7
Q ss_pred HHHHHHHHhhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhhhh
Q 019468 233 FCNVSQYLCIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSWAI 295 (340)
Q Consensus 233 ~~~~~~~~~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~~ 295 (340)
..+...++.++..++ ..+....+.|+++.++|+++++|+++..+++|..++++|+.+..+..
T Consensus 47 ~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 47 VAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 445566677888885 77788889999999999999999999999999999999999987644
No 62
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.41 E-value=0.0019 Score=49.97 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhhhhhhhhccchhhHHHHHhh-hhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheee
Q 019468 87 FWFSIVANTSISGMNFSLMLNSVGFYQISKL-SMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVC 153 (340)
Q Consensus 87 ~~~~l~~~~~~~~~~~al~~~~~~~~~~l~~-~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~ 153 (340)
....+.+....++...+++++|++.+..+-. ..-+.+++.+.+++||++++.+++++.++++|+...
T Consensus 39 ~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 39 ILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 3444566777888899999999999977755 668899999999999999999999999999999765
No 63
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.38 E-value=0.00091 Score=51.42 Aligned_cols=69 Identities=12% Similarity=0.045 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhhhhhhhccchhhHHHHHhh-hhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeee
Q 019468 87 FWFSIVANTSISGMNFSLMLNSVGFYQISKL-SMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTV 155 (340)
Q Consensus 87 ~~~~l~~~~~~~~~~~al~~~~~~~~~~l~~-~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~ 155 (340)
...-+.+....++...+++.+|.+.+..+-. ...+.+.+.+++++||++++.+++++.++++|+.....
T Consensus 33 ~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 33 IITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 3334567777888899999999999877755 77889999999999999999999999999999987643
No 64
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.37 E-value=0.00076 Score=52.36 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=58.4
Q ss_pred HHHHHHHhhhhhhhhccchhhHHHHHh-hhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeec
Q 019468 90 SIVANTSISGMNFSLMLNSVGFYQISK-LSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVT 156 (340)
Q Consensus 90 ~l~~~~~~~~~~~al~~~~~~~~~~l~-~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~ 156 (340)
-+.+.....+...+++.+|.+.+..+- ...-+.+++.++++++|++++.+++++.++++|+......
T Consensus 37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 445667777888999999999998885 4788899999999999999999999999999999887543
No 65
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.0015 Score=59.34 Aligned_cols=69 Identities=9% Similarity=0.097 Sum_probs=62.3
Q ss_pred HHHHH-HHHHHhhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeee
Q 019468 87 FWFSI-VANTSISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTV 155 (340)
Q Consensus 87 ~~~~l-~~~~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~ 155 (340)
.+.|+ .+.++-..++.|+.+-|.++.+-+-+++.+..++++..+++||.+....+++.++++|-.++..
T Consensus 67 Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 67 WWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI 136 (335)
T ss_pred HHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence 34455 5778888999999999999999999999999999999999999999999999999999988654
No 66
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.33 E-value=0.0044 Score=58.48 Aligned_cols=58 Identities=10% Similarity=0.008 Sum_probs=52.3
Q ss_pred hhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeee
Q 019468 97 ISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCT 154 (340)
Q Consensus 97 ~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~ 154 (340)
+...+++++.+++..+++.....|+++.++++++++|+++..+++|.+++++|+.+.+
T Consensus 290 n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 290 NEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 3334469999999999999999999999999999999999999999999999997643
No 67
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.0009 Score=51.05 Aligned_cols=70 Identities=13% Similarity=0.029 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhhhhhhhhccchhhHHHHHh-hhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeec
Q 019468 87 FWFSIVANTSISGMNFSLMLNSVGFYQISK-LSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVT 156 (340)
Q Consensus 87 ~~~~l~~~~~~~~~~~al~~~~~~~~~~l~-~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~ 156 (340)
...-+.+.....+...|+|++|.+.+..+- ....+.+++.++++++|+.+..+++++.++++|+......
T Consensus 34 il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 34 ILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 444456677778888999999999987664 4668899999999999999999999999999999876543
No 68
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.32 E-value=0.002 Score=59.18 Aligned_cols=103 Identities=7% Similarity=-0.062 Sum_probs=75.0
Q ss_pred cchhHHHHHHHHH----HHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHHhhhhhhhhc-cchhhHHHHHhhhhHH
Q 019468 47 FGFATTLTGFHFA----VTALVGLVSNATGYSNSASIHVPFWELFWFSIVANTSISGMNFSLM-LNSVGFYQISKLSMIP 121 (340)
Q Consensus 47 ~~~p~~l~~~r~~----~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~-~~~~~~~~~l~~~~Pi 121 (340)
++ |...++.|+. .+.++.... + +. + +......+..+..|+.....+.++..+.+ +.+++.+.++.+..|+
T Consensus 176 ~~-~~~~~~~~~~g~~~~~~~~~~~~-~-~~-~-~~~~~~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pv 250 (290)
T TIGR00776 176 VD-GLSVLLPQAIGMVIGGIIFNLGH-I-LA-K-PLKKYAILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVI 250 (290)
T ss_pred CC-cceehhHHHHHHHHHHHHHHHHH-h-cc-c-chHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHH
Confidence 45 7777666666 333333323 1 11 1 11122233334467777777778889999 9999999999999999
Q ss_pred HHHHHHHHHhCcccChhhh----HHHHHHhhhheeee
Q 019468 122 VVCVMEWILHGKKYSKEVK----MAVVVVVVGVGVCT 154 (340)
Q Consensus 122 ~~~ll~~l~~~e~~~~~~~----~~l~l~~~Gv~l~~ 154 (340)
...+.+++++||+.+++++ ++.++++.|+.+..
T Consensus 251 ia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 251 ISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 9999999999999999999 99999999987753
No 69
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.11 E-value=0.0094 Score=46.27 Aligned_cols=55 Identities=20% Similarity=0.445 Sum_probs=44.6
Q ss_pred Hhhcccch-hHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhhh
Q 019468 240 LCIGRFSA-VTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSWA 294 (340)
Q Consensus 240 ~~l~~~~~-~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~ 294 (340)
..+++.+- ..+++..-+..+.+.+.|+++|||++++.+++|+.+++.|+...+..
T Consensus 49 ~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 49 QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34566543 44556666788888999999999999999999999999999998643
No 70
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=96.93 E-value=0.019 Score=45.29 Aligned_cols=57 Identities=21% Similarity=0.407 Sum_probs=45.0
Q ss_pred HHhhcccch-hHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhhhh
Q 019468 239 YLCIGRFSA-VTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSWAI 295 (340)
Q Consensus 239 ~~~l~~~~~-~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~~ 295 (340)
...+++.+- ..+++..-+--+.+++.|+++|||++|+.+++|+++++.|+...+...
T Consensus 48 s~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 48 SFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 344566543 445555667888889999999999999999999999999999986433
No 71
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.89 E-value=0.023 Score=43.93 Aligned_cols=52 Identities=23% Similarity=0.588 Sum_probs=43.6
Q ss_pred hhcccc-hhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHh
Q 019468 241 CIGRFS-AVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYS 292 (340)
Q Consensus 241 ~l~~~~-~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~ 292 (340)
.+++.| .+.+++..-+-.+.+.+.|+++|||++++.+++|+.+++.|+...+
T Consensus 55 al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 55 AVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 355554 4556777778888999999999999999999999999999998864
No 72
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=96.81 E-value=0.015 Score=53.73 Aligned_cols=127 Identities=14% Similarity=0.041 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhc---CCCCCC-----CCccchHHHHHHHHHHHHH
Q 019468 25 NIVSSVGIIMANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSNAT---GYSNSA-----SIHVPFWELFWFSIVANTS 96 (340)
Q Consensus 25 ~~~~s~~~~~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~~~---~~~~~~-----~~~~~~~~~~~~~l~~~~~ 96 (340)
+..+.......++.++++ ++.+ |....++.-..+.+........ +..... ..+..+...+..++....+
T Consensus 162 sl~~~a~~~~~qe~~~~~--~~~~-~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g 238 (303)
T PF08449_consen 162 SLLLDAFTGVYQEKLFKK--YGKS-PWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALG 238 (303)
T ss_pred HHHHHHHHHHHHHHHHHH--hCCc-HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334444445668888887 7788 8888888888777755443222 111100 0111244456666777777
Q ss_pred hhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeee
Q 019468 97 ISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCT 154 (340)
Q Consensus 97 ~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~ 154 (340)
+.+.+...+..++-..+++..+.-+++.+++.+++++++++.+|.|+++.+.|..+-.
T Consensus 239 ~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~ 296 (303)
T PF08449_consen 239 QFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYS 296 (303)
T ss_pred HHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHH
Confidence 8888888899999999999999999999999999999999999999999999987643
No 73
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.68 E-value=0.035 Score=49.96 Aligned_cols=102 Identities=9% Similarity=-0.029 Sum_probs=71.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHHhhhhhhhhccchhhHHHHHhhhhHHHHHHH
Q 019468 47 FGFATTLTGFHFAVTALVGLVSNATGYSNSASIHVPFWELFWFSIVANTSISGMNFSLMLNSVGFYQISKLSMIPVVCVM 126 (340)
Q Consensus 47 ~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll 126 (340)
.+ |....+-|.+--.+...++......+ ..++..++-...|+..+.++.++..|.+..+++.+..+..+.++...+.
T Consensus 162 ~~-~~~~~lPqaiGm~i~a~i~~~~~~~~--~~~k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlg 238 (269)
T PF06800_consen 162 VS-GWSAFLPQAIGMLIGAFIFNLFSKKP--FFEKKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLG 238 (269)
T ss_pred CC-hhHhHHHHHHHHHHHHHHHhhccccc--ccccchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhh
Confidence 44 66666666554444333333322111 2223333345568999999999999999999999999999999999999
Q ss_pred HHHHhCcccChhhhH----HHHHHhhhhe
Q 019468 127 EWILHGKKYSKEVKM----AVVVVVVGVG 151 (340)
Q Consensus 127 ~~l~~~e~~~~~~~~----~l~l~~~Gv~ 151 (340)
+.+++||+-+++++. +++++++|.+
T Consensus 239 GI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 239 GIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred hheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 999999999988764 4455555544
No 74
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.65 E-value=0.011 Score=44.43 Aligned_cols=56 Identities=11% Similarity=0.002 Sum_probs=34.2
Q ss_pred HHHHHHhhhhhhhhccchhhHHHHH-hhhhHHHHHHHHHHHhCcccChhhhHHHHHH
Q 019468 91 IVANTSISGMNFSLMLNSVGFYQIS-KLSMIPVVCVMEWILHGKKYSKEVKMAVVVV 146 (340)
Q Consensus 91 l~~~~~~~~~~~al~~~~~~~~~~l-~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~ 146 (340)
..+.....+...+++++|.+.+..+ .....+.+.+.+.+++||+++..|++++.++
T Consensus 37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3667777888999999999999666 4588999999999999999999999998764
No 75
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.60 E-value=0.14 Score=47.91 Aligned_cols=95 Identities=15% Similarity=0.135 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhhhhhhhhccchhhHHHHH-hhhhHHHHHHHHHHHhCccc---C----hhhhHHHHHHhhhheeeee--
Q 019468 86 LFWFSIVANTSISGMNFSLMLNSVGFYQIS-KLSMIPVVCVMEWILHGKKY---S----KEVKMAVVVVVVGVGVCTV-- 155 (340)
Q Consensus 86 ~~~~~l~~~~~~~~~~~al~~~~~~~~~~l-~~~~Pi~~~ll~~l~~~e~~---~----~~~~~~l~l~~~Gv~l~~~-- 155 (340)
-+..|++-+.++..+..+++|+++|...-+ ..+.-+...++..++++|=. + ..-.++++++++|+++...
T Consensus 76 ~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag 155 (345)
T PRK13499 76 VFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAG 155 (345)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 445577888899999999999999988544 55667788888888888643 2 2456888999999999765
Q ss_pred --ccc--------c-cchhhHHHHHHHHHHHHHHHh
Q 019468 156 --TDV--------K-VNAKGFICACVAVFSTSLQQI 180 (340)
Q Consensus 156 --~~~--------~-~~~~G~~l~l~s~~~~a~~~v 180 (340)
.|. + ....|+++++.+.+.++.|+.
T Consensus 156 ~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~ 191 (345)
T PRK13499 156 QLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSF 191 (345)
T ss_pred hhcccccccccccccchHhHHHHHHHHHHHHHHHHH
Confidence 332 1 235899999999999999993
No 76
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.58 E-value=0.041 Score=51.35 Aligned_cols=139 Identities=17% Similarity=0.164 Sum_probs=85.4
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHh-cCCCCCCCCccchHH---HHH
Q 019468 13 SSSVSDVGAWGMNIVSSVGIIMANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSNA-TGYSNSASIHVPFWE---LFW 88 (340)
Q Consensus 13 ~~~~~~~~~~~~~~~~s~~~~~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~~-~~~~~~~~~~~~~~~---~~~ 88 (340)
....+.+++...+..-++.. +..|...++ .+ +....++=-+++.++..+... .+..+.+.-..+... +..
T Consensus 165 ~~i~GDll~l~~a~lya~~n-V~~E~~v~~----~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~ 238 (334)
T PF06027_consen 165 NPILGDLLALLGAILYAVSN-VLEEKLVKK----AP-RVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVG 238 (334)
T ss_pred ccchhHHHHHHHHHHHHHHH-HHHHHhccc----CC-HHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHH
Confidence 34555566666555555444 447777777 55 444444333444444332211 111110011112221 222
Q ss_pred HHHHHHHHhhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeecc
Q 019468 89 FSIVANTSISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTD 157 (340)
Q Consensus 89 ~~l~~~~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~ 157 (340)
.++.......+....+++.++....+-.-++.++.++++.+++|+++++..+++.+++++|.++....+
T Consensus 239 ~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~ 307 (334)
T PF06027_consen 239 YALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE 307 (334)
T ss_pred HHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence 233333334455667788888888888899999999999999999999999999999999999976543
No 77
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.54 E-value=0.016 Score=53.31 Aligned_cols=117 Identities=18% Similarity=0.219 Sum_probs=76.8
Q ss_pred chhhHHHHHHHHHHHHHHHhhhccchhhcccccccchhhhHHHHhhhccCChhhHhhhhchHHHHHHHHHHHHHHHHHHH
Q 019468 161 NAKGFICACVAVFSTSLQQIDMKPLVVRIHHCHRMTSNTSIGSLQKKYSVGSFELLSKTAPIQAVSLLVFAVFCNVSQYL 240 (340)
Q Consensus 161 ~~~G~~l~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 240 (340)
...|+.+++.++++.+...+++|+...|-+. -..+.+..+........++....+...+-. ..+.
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~------------~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~---~~~~ 69 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR------------GSLRAGSGGRSYLRRPLWWIGLLLMVLGEI---LNFV 69 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------------ccccccchhhHHHhhHHHHHHHHHHhcchH---HHHH
Confidence 3579999999999999999977775322110 000000011111111111111222223333 3344
Q ss_pred hhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHh
Q 019468 241 CIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYS 292 (340)
Q Consensus 241 ~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~ 292 (340)
.....|.+..+..+.+.-++..+++..+++|+++...++|.++++.|..+..
T Consensus 70 Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 70 ALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 4677788888888899999999999999999999999999999999998764
No 78
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=96.39 E-value=0.0071 Score=54.04 Aligned_cols=67 Identities=21% Similarity=0.325 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhhhhhh
Q 019468 231 AVFCNVSQYLCIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSWAIEA 297 (340)
Q Consensus 231 ~~~~~~~~~~~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~~~~ 297 (340)
-...|...|..++..+|.+..+..-.|.+++.++++++++.+++..||++..+...|+.+.......
T Consensus 27 Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 27 YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 3456777788999999999999999999999999999999999999999999999999997654443
No 79
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.23 E-value=0.034 Score=42.52 Aligned_cols=53 Identities=21% Similarity=0.415 Sum_probs=44.8
Q ss_pred hcccc-hhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhhh
Q 019468 242 IGRFS-AVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSWA 294 (340)
Q Consensus 242 l~~~~-~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~ 294 (340)
+++.+ .+.+++..-+-.+.+.+.|+++|||+++..+++|+.+++.|+...+..
T Consensus 51 lk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 51 LKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 55553 456677777888899999999999999999999999999999987653
No 80
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.01 E-value=0.02 Score=44.48 Aligned_cols=70 Identities=11% Similarity=0.185 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhccchhhHHHHHh-hhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheee
Q 019468 83 FWELFWFSIVANTSISGMNFSLMLNSVGFYQISK-LSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVC 153 (340)
Q Consensus 83 ~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~l~-~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~ 153 (340)
++...+. +++-.+...+++.+...+.|.+.-+. ++.=++|++.++++.+|..+++.+++++++++|+.++
T Consensus 42 ~~y~ipf-~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 42 PKYIIPF-LLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 3444443 34555566778889999999988774 8888999999988888888999999999999999876
No 81
>PRK11431 multidrug efflux system protein; Provisional
Probab=95.99 E-value=0.048 Score=41.92 Aligned_cols=51 Identities=16% Similarity=0.292 Sum_probs=43.9
Q ss_pred hcccc-hhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHh
Q 019468 242 IGRFS-AVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYS 292 (340)
Q Consensus 242 l~~~~-~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~ 292 (340)
+++.| .+.+++..-+-.+.+.+.|+++|||++++.+++|+.+++.|+...+
T Consensus 50 l~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 50 MKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 45553 4567777778889999999999999999999999999999999875
No 82
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=95.97 E-value=0.0012 Score=57.54 Aligned_cols=202 Identities=13% Similarity=0.117 Sum_probs=113.9
Q ss_pred HHHHHHHHHhhhhhhhhccchhhHHHHH-hhhhHHHHHHHHHHHhCcccChhhh----HHHHHHhhhheeeeecccc---
Q 019468 88 WFSIVANTSISGMNFSLMLNSVGFYQIS-KLSMIPVVCVMEWILHGKKYSKEVK----MAVVVVVVGVGVCTVTDVK--- 159 (340)
Q Consensus 88 ~~~l~~~~~~~~~~~al~~~~~~~~~~l-~~~~Pi~~~ll~~l~~~e~~~~~~~----~~l~l~~~Gv~l~~~~~~~--- 159 (340)
.-|++-++++..++-|++++++|.+.=+ ..+.-+-+.+++++.++|=.+..+. .+++++++|+.+.+..|.+
T Consensus 64 isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~ 143 (288)
T COG4975 64 ISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKE 143 (288)
T ss_pred HhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecccccc
Confidence 3355667888889999999998887433 3455677888999999998877654 7888999999999886631
Q ss_pred -----cchhhHHHHHHHHHHHHHHHhhhccch-hhcccccccchhhhHHHHh-hhccCC-hhhHhhhhchHHHHHHHHHH
Q 019468 160 -----VNAKGFICACVAVFSTSLQQIDMKPLV-VRIHHCHRMTSNTSIGSLQ-KKYSVG-SFELLSKTAPIQAVSLLVFA 231 (340)
Q Consensus 160 -----~~~~G~~l~l~s~~~~a~~~v~~k~~~-~~~~~~~~~~~~~~~~~l~-~~~~~~-~~~~~~~~~~~~~~~l~~~~ 231 (340)
.--.|+...+.|.+.|..|.+..+... ...++..=....+....+. ...+.+ ..+-..+.+ ...-+..+
T Consensus 144 ~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~~~~~~~~~~K~t~~n---ii~G~~Wa 220 (288)
T COG4975 144 EENPSNLKKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILGFFKMEKRFNKYTWLN---IIPGLIWA 220 (288)
T ss_pred ccChHhhhhheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHHhhcccccchHHHHHHH---HhhHHHHH
Confidence 124688888889999988877444321 0011000000111111110 000000 000000000 00000011
Q ss_pred HHHHHHHHHhhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccc----hhhhhHHhHhHHHHhh
Q 019468 232 VFCNVSQYLCIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKN----ILGMTVAVLGMIVYSW 293 (340)
Q Consensus 232 ~~~~~~~~~~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~----~iG~~lil~Gv~l~~~ 293 (340)
..|+..+...++.+-.+.-...-+--+++.+-|.++++|+-|..+ ++|++++++|..+...
T Consensus 221 -~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 221 -IGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI 285 (288)
T ss_pred -hhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence 123333333334333222222333445778889999999977664 5788888888776543
No 83
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=95.86 E-value=0.33 Score=39.28 Aligned_cols=102 Identities=12% Similarity=0.158 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHh-cCCCCC-CCCccchHHHHHHHHHHHHHhhhhhhhhccchhhHHHHHhhh-hHHHHHHH
Q 019468 50 ATTLTGFHFAVTALVGLVSNA-TGYSNS-ASIHVPFWELFWFSIVANTSISGMNFSLMLNSVGFYQISKLS-MIPVVCVM 126 (340)
Q Consensus 50 p~~l~~~r~~~~~l~l~~~~~-~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~l~~~-~Pi~~~ll 126 (340)
|+.-+++.+..+.+.+..+.. .+..+. ..++.||+.++ -|++......+..++...++++....+.-+ +-+..+++
T Consensus 30 ~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~l-GG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~i 108 (138)
T PF04657_consen 30 PLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYL-GGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLI 108 (138)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhc-cHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 888999999988886655432 222121 13445666655 588888888899999999988888776554 45666777
Q ss_pred HHH----HhCcccChhhhHHHHHHhhhhee
Q 019468 127 EWI----LHGKKYSKEVKMAVVVVVVGVGV 152 (340)
Q Consensus 127 ~~l----~~~e~~~~~~~~~l~l~~~Gv~l 152 (340)
+.+ ..++++++.|.+++++.++|+.+
T Consensus 109 D~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 109 DHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 774 35678999999999999999864
No 84
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=95.61 E-value=0.083 Score=46.63 Aligned_cols=56 Identities=11% Similarity=0.007 Sum_probs=50.4
Q ss_pred HhhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhhe
Q 019468 96 SISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVG 151 (340)
Q Consensus 96 ~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~ 151 (340)
-+.+-..++...|.....++.+..|.+-++.++++++|.++..||+++..++++.+
T Consensus 223 PYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 223 PYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred chHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 34455678999999999999999999999999999999999999999998887765
No 85
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.54 E-value=0.24 Score=43.42 Aligned_cols=65 Identities=8% Similarity=-0.041 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhhee
Q 019468 88 WFSIVANTSISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGV 152 (340)
Q Consensus 88 ~~~l~~~~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l 152 (340)
...+..+....+..+.++|.+....++...+.++++.+++.++++|+++..++++..+.+.|+.+
T Consensus 157 ~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 157 IVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 33456677777889999999999999999999999999999999999999999999999999765
No 86
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.29 E-value=0.21 Score=37.46 Aligned_cols=46 Identities=17% Similarity=0.378 Sum_probs=24.9
Q ss_pred HHhhcccchhH-HHHHhhhHHHHHHHHHHHhhCccccccchhhhhHH
Q 019468 239 YLCIGRFSAVT-FQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVA 284 (340)
Q Consensus 239 ~~~l~~~~~~~-~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~li 284 (340)
...+++.+... +++..-+..+.+.+.|.++|||++|..+++|+.++
T Consensus 47 ~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 47 SLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 34567765444 46666678889999999999999999999999875
No 87
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=95.20 E-value=0.022 Score=50.54 Aligned_cols=127 Identities=10% Similarity=0.034 Sum_probs=85.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHH
Q 019468 17 SDVGAWGMNIVSSVGIIMANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSNATGYSNSASIHVPFWELFWFSIVANTS 96 (340)
Q Consensus 17 ~~~~~~~~~~~~s~~~~~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (340)
-.+.+|++-+.+++-+ ..|++-.+ .++-+.+..+-.+....-+......+..+.+.-.++|+-+.-+|+....+
T Consensus 193 t~aai~s~lf~asvyI--ilR~iGk~----~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfgfig 266 (346)
T KOG4510|consen 193 TVAAISSVLFGASVYI--ILRYIGKN----AHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFGFIG 266 (346)
T ss_pred hHHHHHhHhhhhhHHH--HHHHhhcc----ccEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhhhHH
Confidence 4556777666555544 34777665 33223333333222222222233333333223445555566779999999
Q ss_pred hhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhh
Q 019468 97 ISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVG 149 (340)
Q Consensus 97 ~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~G 149 (340)
+.+...++|-=-++-.++.+++..++..+...+++++-|+++.|.+.++++.-
T Consensus 267 QIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS 319 (346)
T KOG4510|consen 267 QILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSS 319 (346)
T ss_pred HHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehh
Confidence 99999999999999999999999999999999999999999999887665543
No 88
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=94.95 E-value=0.041 Score=49.18 Aligned_cols=48 Identities=21% Similarity=0.381 Sum_probs=31.7
Q ss_pred HHhhhHHHHHHHHHHH-hhCcc-----ccccchhhhhHHhHhHHHHhhhhhhhh
Q 019468 252 VLGHMKTVCILTLGWL-LFDSQ-----LTVKNILGMTVAVLGMIVYSWAIEAEK 299 (340)
Q Consensus 252 i~~~~~~v~~~~~s~~-l~ge~-----~s~~~~iG~~lil~Gv~l~~~~~~~~~ 299 (340)
+-+..+-+.+-..|-+ +||++ -.+.+.+|.+++++|..++..-|.+++
T Consensus 87 iW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~ 140 (254)
T PF07857_consen 87 IWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEK 140 (254)
T ss_pred HHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCC
Confidence 3334444444444433 66644 367799999999999999987766553
No 89
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=92.51 E-value=3.4 Score=33.36 Aligned_cols=122 Identities=20% Similarity=0.226 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhcc-cccccchhhhHHH--------HhhhccCChhhHhhhhchHHHHHHHHHHHHHH
Q 019468 165 FICACVAVFSTSLQQIDMKPLVVRIH-HCHRMTSNTSIGS--------LQKKYSVGSFELLSKTAPIQAVSLLVFAVFCN 235 (340)
Q Consensus 165 ~~l~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~--------l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (340)
.++++.+..+-+++...+-++.++.+ |.....+....+. +.++.+.+ ... ..|.....-.+++...-
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~---~~~-~~p~w~~lGG~lG~~~V 78 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLA---SLS-SVPWWAYLGGLLGVFFV 78 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccc---hhc-cCChHHhccHHHHHHHH
Confidence 56778888888888887777766655 5444433322221 11111111 111 11222222223455555
Q ss_pred HHHHHhhcccchhHHHHHhhhHHHHH-HHHHHH-hhC---ccccccchhhhhHHhHhHHH
Q 019468 236 VSQYLCIGRFSAVTFQVLGHMKTVCI-LTLGWL-LFD---SQLTVKNILGMTVAVLGMIV 290 (340)
Q Consensus 236 ~~~~~~l~~~~~~~~si~~~~~~v~~-~~~s~~-l~g---e~~s~~~~iG~~lil~Gv~l 290 (340)
.+..+.+++.++.........-++.+ .+++.+ +|| +++++.+++|..+++.|+.+
T Consensus 79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 56667789999988888777766554 666665 444 55899999999999999863
No 90
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=92.14 E-value=0.23 Score=45.92 Aligned_cols=137 Identities=16% Similarity=0.157 Sum_probs=88.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHH-HH-HhcCCCCC-----CCCccchHHHHHH
Q 019468 17 SDVGAWGMNIVSSVGIIMANKQLMSPSGLGFGFATTLTGFHFAVTALVGL-VS-NATGYSNS-----ASIHVPFWELFWF 89 (340)
Q Consensus 17 ~~~~~~~~~~~~s~~~~~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~-~~-~~~~~~~~-----~~~~~~~~~~~~~ 89 (340)
+.+.+.+.++..+... ++.|.++...++..+ ++.+...+--++..++. .+ -....... +..+.+...+...
T Consensus 164 G~i~a~~s~~~~al~~-I~~~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (316)
T KOG1441|consen 164 GFISAMISNLAFALRN-ILSKKLLTSKGESLN-SMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLN 241 (316)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhhhccccccC-chHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHH
Confidence 3444444444444444 446666643225677 88887777766666544 22 22111110 0111122223444
Q ss_pred HHHHHHHhhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeee
Q 019468 90 SIVANTSISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTV 155 (340)
Q Consensus 90 ~l~~~~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~ 155 (340)
+++....+...+..+..+++-+.++.....=+.+.+.++++++++.++.+.+|.+++++|+.+-+.
T Consensus 242 sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 242 SVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR 307 (316)
T ss_pred HHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 555566677778888999999999888888888888999999999999999999999999987543
No 91
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=91.93 E-value=0.66 Score=36.05 Aligned_cols=56 Identities=21% Similarity=0.375 Sum_probs=42.4
Q ss_pred HHHHHHhhcccchhHHH-HHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHH
Q 019468 235 NVSQYLCIGRFSAVTFQ-VLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIV 290 (340)
Q Consensus 235 ~~~~~~~l~~~~~~~~s-i~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l 290 (340)
.+..++.+++.+-+.+. +.|.+.-+++++.++++.+|..+...++|+.+++.|+.+
T Consensus 55 Sv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 55 SVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 34445667776544443 446888889999998877777899999999999999864
No 92
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=91.91 E-value=0.17 Score=44.17 Aligned_cols=71 Identities=13% Similarity=0.069 Sum_probs=63.4
Q ss_pred chHHHHHHHHHHHHHhhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhhee
Q 019468 82 PFWELFWFSIVANTSISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGV 152 (340)
Q Consensus 82 ~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l 152 (340)
.++++..+++...+++++.+.-..+-++-..+++..+--+||.+++.++++..++.+||++..+.+.|...
T Consensus 240 ~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 240 VFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 36777888888888999988888888888888888899999999999999999999999999999988765
No 93
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=91.32 E-value=0.44 Score=44.21 Aligned_cols=59 Identities=19% Similarity=0.318 Sum_probs=55.0
Q ss_pred HHHHHHHhhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHh
Q 019468 234 CNVSQYLCIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYS 292 (340)
Q Consensus 234 ~~~~~~~~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~ 292 (340)
.|...|..+.+.+|.++.+...+|...+.+++.++++++++..||...++...|+.+..
T Consensus 105 qNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 105 QNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred hhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 34577888999999999999999999999999999999999999999999999999876
No 94
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=89.64 E-value=20 Score=35.88 Aligned_cols=18 Identities=6% Similarity=0.211 Sum_probs=7.4
Q ss_pred cccChhhhHHHHHHhhhh
Q 019468 133 KKYSKEVKMAVVVVVVGV 150 (340)
Q Consensus 133 e~~~~~~~~~l~l~~~Gv 150 (340)
++.+..+++.......|+
T Consensus 279 ~~~~~~~lv~~~~~~~a~ 296 (524)
T PF05977_consen 279 RRLSSRRLVLLASLLFAL 296 (524)
T ss_pred cccCcchhhHHHHHHHHH
Confidence 444444444433333333
No 95
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=89.54 E-value=5.7 Score=36.27 Aligned_cols=70 Identities=13% Similarity=0.154 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhhee
Q 019468 83 FWELFWFSIVANTSISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGV 152 (340)
Q Consensus 83 ~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l 152 (340)
+++++.++...++++.+.++-++.-++-..+++.-+-=++...++.++.+.+.++.||+++.+.+.|+.+
T Consensus 241 ~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 241 AFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred HHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 7788999999999999999988877777778888888899999999999999999999999998888765
No 96
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=89.28 E-value=4 Score=35.65 Aligned_cols=126 Identities=7% Similarity=0.052 Sum_probs=88.9
Q ss_pred HHH-HHHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHh-cCCCCCC--CCccc---hHHHHHHHHHH
Q 019468 21 AWG-MNIVSSVGIIMANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSNA-TGYSNSA--SIHVP---FWELFWFSIVA 93 (340)
Q Consensus 21 ~~~-~~~~~s~~~~~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~~-~~~~~~~--~~~~~---~~~~~~~~l~~ 93 (340)
.|+ .|.+.+....+..|.-.+- .++. ...-.++.-+++..++..+.. .+....+ ....+ ...++.-|+..
T Consensus 158 ~Wm~~NclssaafVL~mrkri~l--tNf~-d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~s 234 (309)
T COG5070 158 LWMFTNCLSSAAFVLIMRKRIKL--TNFK-DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCS 234 (309)
T ss_pred EEEehhhHhHHHHHHHHHHhhcc--cccc-hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHH
Confidence 677 6888888888888777664 3466 677788888888877655443 2222200 01111 22234445666
Q ss_pred HHHhhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhh
Q 019468 94 NTSISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVG 149 (340)
Q Consensus 94 ~~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~G 149 (340)
.+..++.-++++-++...+++.-++.-...++-+.++++|..++....++.+++..
T Consensus 235 vgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGfls 290 (309)
T COG5070 235 VGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLS 290 (309)
T ss_pred hhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHH
Confidence 66677788899999999999999999888889999999999999988888776643
No 97
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=89.28 E-value=1 Score=42.09 Aligned_cols=123 Identities=11% Similarity=0.058 Sum_probs=82.5
Q ss_pred HHhhhcCCCCCcchhHHHHHHHH---HHHHHHHHHHHhcCCCCCC-CCccchHHHHHHHH-HHHHHhhhhhhhhccchhh
Q 019468 36 NKQLMSPSGLGFGFATTLTGFHF---AVTALVGLVSNATGYSNSA-SIHVPFWELFWFSI-VANTSISGMNFSLMLNSVG 110 (340)
Q Consensus 36 ~k~~~~~~~~g~~~p~~l~~~r~---~~~~l~l~~~~~~~~~~~~-~~~~~~~~~~~~~l-~~~~~~~~~~~al~~~~~~ 110 (340)
.|.=..+++.+.+-|+++++.-. ++.+..++++.+++..+++ |...+...++..++ ...+.-++|-.|.-.+++-
T Consensus 266 lk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~L 345 (416)
T KOG2765|consen 266 LKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPL 345 (416)
T ss_pred HHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccch
Confidence 34444443235665565554433 2222223333344332222 22333333444454 4567888999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeeccc
Q 019468 111 FYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTDV 158 (340)
Q Consensus 111 ~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~ 158 (340)
.+++-...+.+..++.+.++.++.+++..++|.+.+++|-++++..+.
T Consensus 346 v~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 346 VVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred hheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 999999999889999999999999999999999999999999887653
No 98
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.26 E-value=8 Score=31.65 Aligned_cols=114 Identities=10% Similarity=0.095 Sum_probs=70.4
Q ss_pred HHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhc-CCCCC-C-CCccchHHHHHHHHHHHHHhhhhhhhhccchhhH
Q 019468 35 ANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSNAT-GYSNS-A-SIHVPFWELFWFSIVANTSISGMNFSLMLNSVGF 111 (340)
Q Consensus 35 ~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~~~-~~~~~-~-~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~ 111 (340)
+|--+-+. .+.|+.-.+..+..+.+++..+... ...+. . ..+.||+.++. |++.+............++++.
T Consensus 23 iN~qL~~~----~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~G-G~lGa~~vt~s~~l~p~lGa~~ 97 (150)
T COG3238 23 INGRLARY----LGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIG-GLLGAIFVTSSILLAPRLGAAT 97 (150)
T ss_pred HHHHHHHH----cCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHc-cchhhhhhhhhHHhccchhHHH
Confidence 35444444 3348888889999887765554332 21111 1 13446766555 5665555555555566665555
Q ss_pred HH-HHhhhhHHHHHHHHHHHh----CcccChhhhHHHHHHhhhheee
Q 019468 112 YQ-ISKLSMIPVVCVMEWILH----GKKYSKEVKMAVVVVVVGVGVC 153 (340)
Q Consensus 112 ~~-~l~~~~Pi~~~ll~~l~~----~e~~~~~~~~~l~l~~~Gv~l~ 153 (340)
.. +..+..-+.-++++.+=. ++++++.+++++++.++|+.+.
T Consensus 98 t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 98 TIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 54 445556667777775433 3669999999999999996554
No 99
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=88.05 E-value=0.25 Score=41.96 Aligned_cols=61 Identities=15% Similarity=0.232 Sum_probs=55.0
Q ss_pred HHHHHHHHhhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhh
Q 019468 233 FCNVSQYLCIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSW 293 (340)
Q Consensus 233 ~~~~~~~~~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~ 293 (340)
..|+.+...+++++|+.++-...-+..+.-+++|+++||++....++..++.+.|+.+..+
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay 125 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAY 125 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEe
Confidence 3467777889999999999999999999999999999999999999999999999888654
No 100
>PRK13499 rhamnose-proton symporter; Provisional
Probab=86.76 E-value=4.6 Score=37.92 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=39.5
Q ss_pred HHhhcccc-hhHHHHHhhhHHHHHHHHHHHhhCccc---c----ccchhhhhHHhHhHHHHhhhhh
Q 019468 239 YLCIGRFS-AVTFQVLGHMKTVCILTLGWLLFDSQL---T----VKNILGMTVAVLGMIVYSWAIE 296 (340)
Q Consensus 239 ~~~l~~~~-~~~~si~~~~~~v~~~~~s~~l~ge~~---s----~~~~iG~~lil~Gv~l~~~~~~ 296 (340)
+..++..+ +.+..+..-+..+.+.+.+.+++||-. + ..-++|.+++++|+++..+.-.
T Consensus 91 ~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~ 156 (345)
T PRK13499 91 GLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ 156 (345)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344443 334444555677888899999998754 2 3468899999999999887443
No 101
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.84 E-value=3.7 Score=37.65 Aligned_cols=132 Identities=10% Similarity=0.052 Sum_probs=86.7
Q ss_pred hHHH-HHHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHh-cCCCC---CCC---CccchHHHHHH-H
Q 019468 20 GAWG-MNIVSSVGIIMANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSNA-TGYSN---SAS---IHVPFWELFWF-S 90 (340)
Q Consensus 20 ~~~~-~~~~~s~~~~~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~~-~~~~~---~~~---~~~~~~~~~~~-~ 90 (340)
-.|. .|..+.....+..|...+. -+++ -..+.+..-+...+.+..... ++..+ ... ...+....+.+ +
T Consensus 159 Y~w~~~n~~~~a~~~v~~kk~vd~--~~l~-~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc 235 (314)
T KOG1444|consen 159 YSWALANCLTTAAFVVYVKKSVDS--ANLN-KFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSC 235 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc--cccc-ceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence 3666 5677777777788888887 4455 566777777777776555442 33211 001 11122223333 4
Q ss_pred HHHHHHhhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeee
Q 019468 91 IVANTSISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCT 154 (340)
Q Consensus 91 l~~~~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~ 154 (340)
+...+-.++...+.+..|+...++.-.-.-..+.+...++.+++.++...+++.++++|-++-+
T Consensus 236 v~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~ 299 (314)
T KOG1444|consen 236 VMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYS 299 (314)
T ss_pred HHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHh
Confidence 4555667777888888888888888855566666677777788899999999999888876643
No 102
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.83 E-value=0.12 Score=47.24 Aligned_cols=118 Identities=17% Similarity=0.179 Sum_probs=74.6
Q ss_pred chhhHHHHHHHHHHHHHHHhhhccchhhcccccccchhhhHHHHhhhccCChhhHhhhhchHHHHHHHHHHHHHHHHHHH
Q 019468 161 NAKGFICACVAVFSTSLQQIDMKPLVVRIHHCHRMTSNTSIGSLQKKYSVGSFELLSKTAPIQAVSLLVFAVFCNVSQYL 240 (340)
Q Consensus 161 ~~~G~~l~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 240 (340)
+..|.++++.+++..+...++.|+..+|... ...+.+-.+...+-...++....+...|=..|+.+|-
T Consensus 19 ~~~G~~LaissS~~Ig~sfilkKkgl~r~~~------------~~~ra~~gg~~yl~~~~Ww~G~ltm~vGei~NFaAYa 86 (335)
T KOG2922|consen 19 NIIGLVLAISSSIFIGSSFILKKKGLKRAGA------------SGLRAGEGGYGYLKEPLWWAGMLTMIVGEIANFAAYA 86 (335)
T ss_pred ceeeeeehhhccEEEeeehhhhHHHHHHHhh------------hcccccCCCcchhhhHHHHHHHHHHHHHhHhhHHHHh
Confidence 5678889999999888888877776533211 0011122222222222222233333345455665543
Q ss_pred hhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhh
Q 019468 241 CIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSW 293 (340)
Q Consensus 241 ~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~ 293 (340)
-.+++-.+-.+.+.-+...+++..++.|+++....+|++++++|..+...
T Consensus 87 ---FAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 87 ---FAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI 136 (335)
T ss_pred ---hchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence 23444455555666778899999999999999999999999999887653
No 103
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.06 E-value=29 Score=28.43 Aligned_cols=130 Identities=17% Similarity=0.077 Sum_probs=69.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhhccchhhcc-cccccchhhhHHHHh------hhccCChhhHhhhhchHHHHHHHHHHHHH
Q 019468 162 AKGFICACVAVFSTSLQQIDMKPLVVRIH-HCHRMTSNTSIGSLQ------KKYSVGSFELLSKTAPIQAVSLLVFAVFC 234 (340)
Q Consensus 162 ~~G~~l~l~s~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~l~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (340)
+...++++.+..+-..++-++-++.+..+ |......+..++... -..+.+++. .....|+....-..++...
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a-~~~~~pwW~~~GG~lGa~~ 82 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLA-AVASAPWWAWIGGLLGAIF 82 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchh-hccCCchHHHHccchhhhh
Confidence 45667778888888888776666654433 444433333332210 011222222 1112222222222234444
Q ss_pred HHHHHHhhcccchhHHHHHhhhHHH-HHHHHHHHhh-C---ccccccchhhhhHHhHhHHHHh
Q 019468 235 NVSQYLCIGRFSAVTFQVLGHMKTV-CILTLGWLLF-D---SQLTVKNILGMTVAVLGMIVYS 292 (340)
Q Consensus 235 ~~~~~~~l~~~~~~~~si~~~~~~v-~~~~~s~~l~-g---e~~s~~~~iG~~lil~Gv~l~~ 292 (340)
-...-....+.++++...+-..-++ .+.++..+=+ | .+++...++|++++++|++...
T Consensus 83 vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 83 VTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred hhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 4444556778877776655544443 3455554433 3 4589999999999999966654
No 104
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=77.24 E-value=22 Score=33.15 Aligned_cols=126 Identities=15% Similarity=0.139 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHh-cCCCCC-----CCCccchHHHHHHHHHHHHHhhhhhhhhccchhhHHHHHh-hhhHHHHHHHHH
Q 019468 56 FHFAVTALVGLVSNA-TGYSNS-----ASIHVPFWELFWFSIVANTSISGMNFSLMLNSVGFYQISK-LSMIPVVCVMEW 128 (340)
Q Consensus 56 ~r~~~~~l~l~~~~~-~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~l~-~~~Pi~~~ll~~ 128 (340)
.+.++++++.+.+.- ....+. ..+...+......|++-..+...+-.+++|+++++.+-+. -+.-.+-.++-.
T Consensus 40 v~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlipp 119 (344)
T PF06379_consen 40 VQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPP 119 (344)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHH
Confidence 477788887766432 221110 0111223334555666666666777888999888875443 333444444444
Q ss_pred HHhC-------cccChhhhHHHHHHhhhheeeeecc-----------cccc-hhhHHHHHHHHHHHHHHHhh
Q 019468 129 ILHG-------KKYSKEVKMAVVVVVVGVGVCTVTD-----------VKVN-AKGFICACVAVFSTSLQQID 181 (340)
Q Consensus 129 l~~~-------e~~~~~~~~~l~l~~~Gv~l~~~~~-----------~~~~-~~G~~l~l~s~~~~a~~~v~ 181 (340)
++.+ ++-....+++++++++|+++....+ .++| -.|++.++.|.+..|..++-
T Consensus 120 i~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g 191 (344)
T PF06379_consen 120 IFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFG 191 (344)
T ss_pred HHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 4433 2334568899999999999865321 1233 37999999999999988773
No 105
>PRK02237 hypothetical protein; Provisional
Probab=73.12 E-value=6 Score=30.30 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=40.8
Q ss_pred hHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhhhh
Q 019468 248 VTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSWAI 295 (340)
Q Consensus 248 ~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~~ 295 (340)
-.++.++-+--+.+++.++.+-|++++...++|.+++++|+.+..+.+
T Consensus 60 RvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 60 RVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred hHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 446677777788889999999999999999999999999998876544
No 106
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=72.53 E-value=4.5 Score=30.79 Aligned_cols=71 Identities=10% Similarity=0.124 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhccchhhHHHH-HhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeee
Q 019468 83 FWELFWFSIVANTSISGMNFSLMLNSVGFYQI-SKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCT 154 (340)
Q Consensus 83 ~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~-l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~ 154 (340)
|.++.++.+ +-.+...++.-++..|.+.+.= -.+++-.|+++.+.....|...++.+++..++++|+.++.
T Consensus 53 w~Y~iPFll-NqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 53 WEYLIPFLL-NQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHHHHH-HHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 444555443 4444566777778877777653 3456677899999888778899999999999999987653
No 107
>PRK02237 hypothetical protein; Provisional
Probab=71.86 E-value=5.3 Score=30.56 Aligned_cols=37 Identities=14% Similarity=0.303 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeec
Q 019468 120 IPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVT 156 (340)
Q Consensus 120 Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~ 156 (340)
.+...+..+.+.|+||++..+++..++++|+.++.+.
T Consensus 70 I~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 70 VAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred HHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 4444577888899999999999999999999887654
No 108
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=71.81 E-value=5.5 Score=30.41 Aligned_cols=38 Identities=16% Similarity=0.341 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeecc
Q 019468 120 IPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTD 157 (340)
Q Consensus 120 Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~ 157 (340)
.+...+-.+.+.|++|++..+++..++++|+.++....
T Consensus 68 I~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 68 IVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 44556677888999999999999999999999876643
No 109
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=71.67 E-value=30 Score=26.40 Aligned_cols=57 Identities=11% Similarity=0.069 Sum_probs=35.3
Q ss_pred hhhhhhhhccchhhHHHHHh-hhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheee
Q 019468 97 ISGMNFSLMLNSVGFYQISK-LSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVC 153 (340)
Q Consensus 97 ~~~~~~al~~~~~~~~~~l~-~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~ 153 (340)
...+-.+.+.-+.+---++. ..+-...+.++.+++||++++....+.++.+.++..+
T Consensus 49 VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 49 VPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred CcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 33333444443333333332 2233344667788999999999999998888777654
No 110
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=68.44 E-value=7.2 Score=29.79 Aligned_cols=48 Identities=19% Similarity=0.369 Sum_probs=40.9
Q ss_pred hHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhhhh
Q 019468 248 VTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSWAI 295 (340)
Q Consensus 248 ~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~~ 295 (340)
-.++.++-+--+.+++-++.+-|++++...++|..++++|+.+..+.+
T Consensus 58 RvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 58 RVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred hHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 346667777788889999999999999999999999999998876544
No 111
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=66.03 E-value=11 Score=28.56 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeecc
Q 019468 120 IPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTD 157 (340)
Q Consensus 120 Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~ 157 (340)
.....+..+++.+.+|++..+.+..++++|+.++....
T Consensus 69 I~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 69 IAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred HHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 34455667788899999999999999999998877653
No 112
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=64.98 E-value=78 Score=28.93 Aligned_cols=135 Identities=12% Similarity=0.033 Sum_probs=84.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHHHH----hcCCC---CCCCCc--cchHH
Q 019468 15 SVSDVGAWGMNIVSSVGIIMANKQLMSPSGLGFGFATTLTGFHFAVTALVGLVSN----ATGYS---NSASIH--VPFWE 85 (340)
Q Consensus 15 ~~~~~~~~~~~~~~s~~~~~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~~~----~~~~~---~~~~~~--~~~~~ 85 (340)
..+...+.+..++..+.+..=.|.+.. +..+ |+....++-+++.+++.++. +.... ...++. .+|.+
T Consensus 175 itGdllIiiaqiivaiQ~v~Eek~l~~---~nV~-pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~ 250 (372)
T KOG3912|consen 175 ITGDLLIIIAQIIVAIQMVCEEKQLKK---SNVA-PLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGD 250 (372)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhh---ccCC-HHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHH
Confidence 444556777788877777665555544 3588 99999999999966543322 22111 111211 12221
Q ss_pred ----------HHHHHHHHHHHhhhhhhhh----ccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhhe
Q 019468 86 ----------LFWFSIVANTSISGMNFSL----MLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVG 151 (340)
Q Consensus 86 ----------~~~~~l~~~~~~~~~~~al----~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~ 151 (340)
+......+.....++|++= ++.++.+-.++-..-..+.=+++.....|+++..|.++.++...|+.
T Consensus 251 ~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~ 330 (372)
T KOG3912|consen 251 AFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGII 330 (372)
T ss_pred HHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112223445555666543 56677777777777777777777778889999999999988888877
Q ss_pred ee
Q 019468 152 VC 153 (340)
Q Consensus 152 l~ 153 (340)
+.
T Consensus 331 lY 332 (372)
T KOG3912|consen 331 LY 332 (372)
T ss_pred HH
Confidence 64
No 113
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.05 E-value=45 Score=31.27 Aligned_cols=90 Identities=12% Similarity=0.028 Sum_probs=48.5
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHHHHHHHHH-----HHhcCCCCCCCCccchH
Q 019468 10 KSSSSSVSDVGAWGMNIVSSVGIIMANKQLMSPSGLGFGFATTLTGFHFAVTALVGLV-----SNATGYSNSASIHVPFW 84 (340)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~s~~~~~~~k~~~~~~~~g~~~p~~l~~~r~~~~~l~l~~-----~~~~~~~~~~~~~~~~~ 84 (340)
+........+.+|.+.. .+.|.+.++ .. -......+++++-++... .+++.. |++.+..
T Consensus 189 Kkt~~~~iliGgWs~sl-------Y~i~ql~~n----Lq-~Iwieyr~yvLgYvlivgliSfaVCYK~G----Pp~d~RS 252 (452)
T KOG3817|consen 189 KKTMMYGILIGGWSISL-------YVIKQLADN----LQ-LIWIEYRDYVLGYVLIVGLISFAVCYKIG----PPKDPRS 252 (452)
T ss_pred cccceEEEEEccchhHH-------HHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHHhhhhccC----CCCCcch
Confidence 33445556667776433 456888887 77 677777777777553222 222222 2233322
Q ss_pred HHHHHHHHHHHHhhhhhhhhccchhhHHHHH
Q 019468 85 ELFWFSIVANTSISGMNFSLMLNSVGFYQIS 115 (340)
Q Consensus 85 ~~~~~~l~~~~~~~~~~~al~~~~~~~~~~l 115 (340)
+-+..-.+...+..+.|++.+...++++.++
T Consensus 253 ~~ilmWtLqli~lvl~Yfsvq~p~~a~A~iI 283 (452)
T KOG3817|consen 253 QTILMWTLQLIGLVLAYFSVQHPSAAIAAII 283 (452)
T ss_pred hhHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 2222233444445556777777777765444
No 114
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=60.67 E-value=7.1 Score=29.74 Aligned_cols=29 Identities=3% Similarity=0.056 Sum_probs=25.6
Q ss_pred HHHHHHhhCccccccchhhhhHHhHhHHH
Q 019468 262 LTLGWLLFDSQLTVKNILGMTVAVLGMIV 290 (340)
Q Consensus 262 ~~~s~~l~ge~~s~~~~iG~~lil~Gv~l 290 (340)
+.++.+.++|++++.++.|.+.++.+++.
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 57888999999999999999999887654
No 115
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=58.60 E-value=4.5 Score=35.90 Aligned_cols=63 Identities=10% Similarity=-0.023 Sum_probs=49.5
Q ss_pred ccchHHHHHHHHHHHHHhhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHH
Q 019468 80 HVPFWELFWFSIVANTSISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAV 143 (340)
Q Consensus 80 ~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l 143 (340)
+..+....+ |+..+.++.+...|-+..++++.-.+..+..+...+-+.+++|||-+++++..+
T Consensus 207 K~t~~nii~-G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v 269 (288)
T COG4975 207 KYTWLNIIP-GLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYV 269 (288)
T ss_pred HHHHHHHhh-HHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhh
Confidence 344554444 888888888888888888888887777778888888899999999999987544
No 116
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=58.45 E-value=72 Score=29.86 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=20.3
Q ss_pred cccccchhhhhHHhHhHHHHhhhhhh
Q 019468 272 QLTVKNILGMTVAVLGMIVYSWAIEA 297 (340)
Q Consensus 272 ~~s~~~~iG~~lil~Gv~l~~~~~~~ 297 (340)
+-....++|.+++++|+....+.-..
T Consensus 132 ~~g~~vL~Gv~v~LiGIai~g~AG~~ 157 (344)
T PF06379_consen 132 PSGQIVLLGVAVCLIGIAICGKAGSM 157 (344)
T ss_pred CCchhhhhHHHHHHHHHHHHhHHHHh
Confidence 33557899999999999998766543
No 117
>PF15102 TMEM154: TMEM154 protein family
Probab=53.69 E-value=6.8 Score=31.73 Aligned_cols=18 Identities=0% Similarity=-0.143 Sum_probs=8.6
Q ss_pred hhhHHhHhHHHHhhhhhh
Q 019468 280 GMTVAVLGMIVYSWAIEA 297 (340)
Q Consensus 280 G~~lil~Gv~l~~~~~~~ 297 (340)
+.+|++..++++.+.||+
T Consensus 68 LvlLLl~vV~lv~~~kRk 85 (146)
T PF15102_consen 68 LVLLLLSVVCLVIYYKRK 85 (146)
T ss_pred HHHHHHHHHHheeEEeec
Confidence 334444455555544443
No 118
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.60 E-value=29 Score=26.07 Aligned_cols=39 Identities=10% Similarity=0.163 Sum_probs=30.7
Q ss_pred HhhhHHHHH----HHHHHHhhCccccccchhhhhHHhHhHHHH
Q 019468 253 LGHMKTVCI----LTLGWLLFDSQLTVKNILGMTVAVLGMIVY 291 (340)
Q Consensus 253 ~~~~~~v~~----~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~ 291 (340)
...++.+++ +.+|.+.++|++.+.++.|..+++.|+++.
T Consensus 71 LK~mQEVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 71 LKTMQEVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 334455544 467999999999999999999998887764
No 119
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=46.09 E-value=19 Score=28.45 Aligned_cols=10 Identities=30% Similarity=0.614 Sum_probs=0.0
Q ss_pred hcCCcccccc
Q 019468 327 EESPAKDVEL 336 (340)
Q Consensus 327 ~~~~~~~~~~ 336 (340)
++.|..+||.
T Consensus 108 ~~~p~~~~~~ 117 (122)
T PF01102_consen 108 TDVPLSSVEI 117 (122)
T ss_dssp ----------
T ss_pred CCCCcceeee
Confidence 4455555554
No 120
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=44.70 E-value=1.2e+02 Score=27.60 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=45.2
Q ss_pred ccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeeccc
Q 019468 105 MLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTDV 158 (340)
Q Consensus 105 ~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~ 158 (340)
+.-++..+.++...---.|.+++++++.+.++-...-+..+++.|+.+=..++.
T Consensus 282 ~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 282 KLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred HHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence 445777777777777888999999999999999999999999999998655553
No 121
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=43.48 E-value=1.9e+02 Score=24.03 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=35.6
Q ss_pred HHHHHhCcccChhhhHHHHH-------HhhhheeeeecccccchhhHHHHHHHHHHHHHHHh
Q 019468 126 MEWILHGKKYSKEVKMAVVV-------VVVGVGVCTVTDVKVNAKGFICACVAVFSTSLQQI 180 (340)
Q Consensus 126 l~~l~~~e~~~~~~~~~l~l-------~~~Gv~l~~~~~~~~~~~G~~l~l~s~~~~a~~~v 180 (340)
.+.++.|..|+..+.+++.+ ++.|+++.+..+...-...++.+..+++.+++..+
T Consensus 88 ~Em~v~KtsP~LYr~LGIfLPLITTNCaVLgvaLln~~~~~~f~qsv~~gf~a~lGfslvmv 149 (193)
T COG4657 88 TEMVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNINEGHNFLQSVVYGFGAALGFSLVMV 149 (193)
T ss_pred HHHHHHccCHHHHHHHHHhhhhHhhchHHHHHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHH
Confidence 34444555555555555543 56788777655443334577888899999998888
No 122
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=41.05 E-value=73 Score=25.87 Aligned_cols=28 Identities=25% Similarity=0.126 Sum_probs=18.3
Q ss_pred hcccchhHHHHHhhhHHHHHHHHHHHhh
Q 019468 242 IGRFSAVTFQVLGHMKTVCILTLGWLLF 269 (340)
Q Consensus 242 l~~~~~~~~si~~~~~~v~~~~~s~~l~ 269 (340)
+..-+....+..-++-|.++.+++.+++
T Consensus 69 i~EkslL~sA~LvYi~PL~~l~v~~~La 96 (150)
T COG3086 69 IEEKSLLKSALLVYIFPLVGLFLGAILA 96 (150)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777777777766666553
No 123
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=40.21 E-value=9.4 Score=34.47 Aligned_cols=38 Identities=5% Similarity=0.083 Sum_probs=0.0
Q ss_pred CcccChhhhHHHHHHhhhheeeeeccc--ccchhhHHHHH
Q 019468 132 GKKYSKEVKMAVVVVVVGVGVCTVTDV--KVNAKGFICAC 169 (340)
Q Consensus 132 ~e~~~~~~~~~l~l~~~Gv~l~~~~~~--~~~~~G~~l~l 169 (340)
++-+-+.-.++++++++=..++...+. +.-..|+++.+
T Consensus 74 RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~ 113 (381)
T PF05297_consen 74 RRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILF 113 (381)
T ss_dssp ----------------------------------------
T ss_pred HhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 333666777777777766655554432 22234554433
No 124
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=37.40 E-value=25 Score=27.75 Aligned_cols=11 Identities=18% Similarity=0.087 Sum_probs=0.0
Q ss_pred hhhhhhhhhhh
Q 019468 315 LEEHVELLKQR 325 (340)
Q Consensus 315 ~~~~~p~~~~~ 325 (340)
+++++|+-...
T Consensus 106 ~d~~~p~~~~~ 116 (122)
T PF01102_consen 106 DDTDVPLSSVE 116 (122)
T ss_dssp -----------
T ss_pred CCCCCCcceee
Confidence 45555654433
No 125
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=36.32 E-value=39 Score=23.43 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=16.2
Q ss_pred chhhhhHHhHhHHHHhhhhhh
Q 019468 277 NILGMTVAVLGMIVYSWAIEA 297 (340)
Q Consensus 277 ~~iG~~lil~Gv~l~~~~~~~ 297 (340)
-++|++++++|.++|....++
T Consensus 6 iLi~ICVaii~lIlY~iYnr~ 26 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 467889999999998765544
No 126
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=30.84 E-value=17 Score=32.60 Aligned_cols=51 Identities=18% Similarity=0.520 Sum_probs=44.5
Q ss_pred cccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhh
Q 019468 243 GRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSW 293 (340)
Q Consensus 243 ~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~ 293 (340)
+.++-+......+-..++..+++|+++..+-.+.++.|.+++++|+.+...
T Consensus 100 QyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~ 150 (336)
T KOG2766|consen 100 QYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVF 150 (336)
T ss_pred hhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEE
Confidence 446667778888888889999999999999999999999999999988653
No 127
>PHA03049 IMV membrane protein; Provisional
Probab=29.97 E-value=61 Score=22.40 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=15.8
Q ss_pred chhhhhHHhHhHHHHhhhhhh
Q 019468 277 NILGMTVAVLGMIVYSWAIEA 297 (340)
Q Consensus 277 ~~iG~~lil~Gv~l~~~~~~~ 297 (340)
-+++++++++|.++|....++
T Consensus 6 ~l~iICVaIi~lIvYgiYnkk 26 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNKK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 357888888999998765544
No 128
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=28.30 E-value=40 Score=25.69 Aligned_cols=46 Identities=13% Similarity=0.279 Sum_probs=36.9
Q ss_pred HHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhhhh
Q 019468 250 FQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSWAI 295 (340)
Q Consensus 250 ~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~~ 295 (340)
++-.+-+--+.+++..+++=|..++...++|.+++++|+.+..+.+
T Consensus 61 YAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 61 YAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred HHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 4455556667778888888889999999999999999988766544
No 129
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=25.91 E-value=13 Score=29.18 Aligned_cols=66 Identities=14% Similarity=0.172 Sum_probs=34.7
Q ss_pred ccccccchhhhhHHhHhHHHHhhhhhhhhcCC-CCCccccccccchhhhhhhhhhhhhcCCcccccc
Q 019468 271 SQLTVKNILGMTVAVLGMIVYSWAIEAEKRKP-DSKTIGHTKNNLLEEHVELLKQRIEESPAKDVEL 336 (340)
Q Consensus 271 e~~s~~~~iG~~lil~Gv~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 336 (340)
|.++..--..++++++|.+.|.+-..+.++.. +....+..+....+-.+|+--+++-...+++|++
T Consensus 4 EWvt~~Is~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r~~~gqyyVpF~V~N~gg~TAasV~V 70 (122)
T TIGR02588 4 EWVTFGISTLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVERMQTGQYYVPFAIHNLGGTTAAAVNI 70 (122)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEeehheeEEeCCEEEEEEEEEeCCCcEEEEEEE
Confidence 44455555566777888888887666543322 1222222222222344565556655555555554
No 130
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.09 E-value=3e+02 Score=21.22 Aligned_cols=38 Identities=16% Similarity=0.147 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhCcc-ccccchhhhhHHhHhHHHHhhhhh
Q 019468 259 VCILTLGWLLFDSQ-LTVKNILGMTVAVLGMIVYSWAIE 296 (340)
Q Consensus 259 v~~~~~s~~l~ge~-~s~~~~iG~~lil~Gv~l~~~~~~ 296 (340)
++.+.+||++=+-. -+++-.|+..++-.|..+.+..+.
T Consensus 57 lVGa~iG~llD~~agTsPwglIv~lllGf~AG~lnv~Rs 95 (116)
T COG5336 57 LVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNVLRS 95 (116)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666542211 344555555555455455554443
No 131
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=24.11 E-value=1.1e+02 Score=18.55 Aligned_cols=18 Identities=22% Similarity=0.067 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 019468 163 KGFICACVAVFSTSLQQI 180 (340)
Q Consensus 163 ~G~~l~l~s~~~~a~~~v 180 (340)
.=+++-++.+.+||+||+
T Consensus 6 liVl~Pil~A~~Wa~fNI 23 (36)
T CHL00196 6 LVIAAPVLAAASWALFNI 23 (36)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345778899999999999
No 132
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=23.84 E-value=1e+02 Score=24.52 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=15.5
Q ss_pred HHHHHHhhCccccccchhhhhHHhHhHHHH
Q 019468 262 LTLGWLLFDSQLTVKNILGMTVAVLGMIVY 291 (340)
Q Consensus 262 ~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~ 291 (340)
+++|.+.+++ --...++|..+...|++..
T Consensus 75 if~G~l~~~~-~~~~~i~g~~~~~~G~~~i 103 (136)
T PF08507_consen 75 IFLGTLCLGQ-SILSIIIGLLLFLVGVIYI 103 (136)
T ss_pred HHHHHHHHhh-HHHHHHHHHHHHHHHHHHH
Confidence 4455555555 2233455666666666554
No 133
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=23.53 E-value=47 Score=19.20 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=9.7
Q ss_pred ccccchhhhhHHhHhHHH
Q 019468 273 LTVKNILGMTVAVLGMIV 290 (340)
Q Consensus 273 ~s~~~~iG~~lil~Gv~l 290 (340)
-++..++|..++..+.++
T Consensus 10 ~~~~~~~G~~l~~~~~~~ 27 (34)
T TIGR01167 10 NSLLLLLGLLLLGLGGLL 27 (34)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 445567777555444433
No 134
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=23.42 E-value=70 Score=31.40 Aligned_cols=24 Identities=8% Similarity=0.091 Sum_probs=19.8
Q ss_pred ccccchhhhhHHhHhHHHHhhhhh
Q 019468 273 LTVKNILGMTVAVLGMIVYSWAIE 296 (340)
Q Consensus 273 ~s~~~~iG~~lil~Gv~l~~~~~~ 296 (340)
++..|++.+.++++|++++.+.++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~ 277 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPK 277 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc
Confidence 788899999999999888765443
No 135
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.07 E-value=16 Score=33.01 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=43.3
Q ss_pred HhhcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHH
Q 019468 240 LCIGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVY 291 (340)
Q Consensus 240 ~~l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~ 291 (340)
+.++.++-..+-+-..+..++++++++++++++-+..-+.++.+|+.|..+-
T Consensus 121 lcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lG 172 (347)
T KOG1442|consen 121 LCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLG 172 (347)
T ss_pred eehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheec
Confidence 4467777777777777888999999999999999999999999999887663
No 136
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=22.17 E-value=3.6e+02 Score=21.77 Aligned_cols=25 Identities=8% Similarity=-0.027 Sum_probs=21.2
Q ss_pred chhhHHHHHHHHHHHHHHHhhhccc
Q 019468 161 NAKGFICACVAVFSTSLQQIDMKPL 185 (340)
Q Consensus 161 ~~~G~~l~l~s~~~~a~~~v~~k~~ 185 (340)
...+++..+.+++.|.-|...|||+
T Consensus 119 ~i~~l~~~li~a~IwipYf~~S~RV 143 (149)
T PF10754_consen 119 AIRELLRSLIAAAIWIPYFLRSKRV 143 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 4568889999999999999988875
No 137
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=21.90 E-value=1.7e+02 Score=23.21 Aligned_cols=15 Identities=20% Similarity=0.093 Sum_probs=6.2
Q ss_pred HHhhhHHHHHHHHHH
Q 019468 252 VLGHMKTVCILTLGW 266 (340)
Q Consensus 252 i~~~~~~v~~~~~s~ 266 (340)
.+.++-|++..+++.
T Consensus 72 ~l~Y~lPll~li~g~ 86 (135)
T PF04246_consen 72 FLVYLLPLLALIAGA 86 (135)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444443
No 138
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=21.49 E-value=3.4e+02 Score=27.09 Aligned_cols=18 Identities=11% Similarity=-0.082 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhhhccch
Q 019468 169 CVAVFSTSLQQIDMKPLV 186 (340)
Q Consensus 169 l~s~~~~a~~~v~~k~~~ 186 (340)
..+.+.|-.-..|..-+-
T Consensus 272 a~a~~g~~qv~~Y~Q~LW 289 (511)
T TIGR00806 272 VFNSAGYYLITYYVHTLW 289 (511)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 455555554444444443
No 139
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=21.34 E-value=65 Score=30.43 Aligned_cols=7 Identities=0% Similarity=-0.164 Sum_probs=2.7
Q ss_pred hhhHHHH
Q 019468 117 LSMIPVV 123 (340)
Q Consensus 117 ~~~Pi~~ 123 (340)
...|++.
T Consensus 5 ~i~~i~~ 11 (385)
T PF03547_consen 5 AILPIFL 11 (385)
T ss_pred HHHHHHH
Confidence 3344433
No 140
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=21.02 E-value=1.2e+02 Score=24.69 Aligned_cols=38 Identities=8% Similarity=-0.140 Sum_probs=22.5
Q ss_pred hhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHHHHHHh
Q 019468 109 VGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMAVVVVV 147 (340)
Q Consensus 109 ~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~ 147 (340)
.-.++.+.+..|+++++++.+. -+++...+.+.++.++
T Consensus 74 lL~sA~LvYi~PL~~l~v~~~L-a~~L~~~e~~~~~~~~ 111 (150)
T COG3086 74 LLKSALLVYIFPLVGLFLGAIL-AQYLFFSELIVIFGAF 111 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHH
Confidence 3456677888899888888665 3333344444443333
No 141
>PRK14789 lipoprotein signal peptidase; Provisional
Probab=20.67 E-value=1.5e+02 Score=25.36 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=10.1
Q ss_pred hhhhhhhhhhhhhcCCc-ccccc
Q 019468 315 LEEHVELLKQRIEESPA-KDVEL 336 (340)
Q Consensus 315 ~~~~~p~~~~~~~~~~~-~~~~~ 336 (340)
+++....+-++++.+|+ +|-++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ 184 (191)
T PRK14789 162 DDELLSELLSRDPSPPAATDART 184 (191)
T ss_pred chHHHHHHHhcCCCCCCCCCccc
Confidence 44443333333355555 55554
No 142
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=20.65 E-value=2e+02 Score=26.68 Aligned_cols=37 Identities=8% Similarity=0.098 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheee
Q 019468 117 LSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVC 153 (340)
Q Consensus 117 ~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~ 153 (340)
--.=+.+.+++.++.+++++...|.++.++..|+..-
T Consensus 277 I~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 277 IVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 3345667888888888888888888888888887765
No 143
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=20.51 E-value=33 Score=30.89 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=0.0
Q ss_pred cchhhhhHHhHhHHHHhhhhh
Q 019468 276 KNILGMTVAVLGMIVYSWAIE 296 (340)
Q Consensus 276 ~~~iG~~lil~Gv~l~~~~~~ 296 (340)
-.+|.+.+.+.|+.+|.++++
T Consensus 233 PSiILVLLaVGGLLfYr~rrR 253 (285)
T PF05337_consen 233 PSIILVLLAVGGLLFYRRRRR 253 (285)
T ss_dssp ---------------------
T ss_pred cchhhhhhhccceeeeccccc
Confidence 345666777778888766554
No 144
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=20.40 E-value=87 Score=28.59 Aligned_cols=15 Identities=13% Similarity=0.259 Sum_probs=7.8
Q ss_pred hHHhHhHHHHhhhhh
Q 019468 282 TVAVLGMIVYSWAIE 296 (340)
Q Consensus 282 ~lil~Gv~l~~~~~~ 296 (340)
+++++|++++..+++
T Consensus 243 ll~l~Gii~~~~~r~ 257 (281)
T PF12768_consen 243 LLVLIGIILAYIRRR 257 (281)
T ss_pred HHHHHHHHHHHHHhh
Confidence 344556666554444
No 145
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=20.33 E-value=5.5e+02 Score=21.94 Aligned_cols=13 Identities=23% Similarity=0.222 Sum_probs=6.0
Q ss_pred HHHHHHHhCcccC
Q 019468 124 CVMEWILHGKKYS 136 (340)
Q Consensus 124 ~ll~~l~~~e~~~ 136 (340)
++....++++|++
T Consensus 190 ~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 190 AFALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHHHhC
Confidence 3334444555544
No 146
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=20.25 E-value=33 Score=22.14 Aligned_cols=19 Identities=21% Similarity=0.532 Sum_probs=13.9
Q ss_pred hhHHhHhHHHHhhhhhhhh
Q 019468 281 MTVAVLGMIVYSWAIEAEK 299 (340)
Q Consensus 281 ~~lil~Gv~l~~~~~~~~~ 299 (340)
++++++|+++|.+.+++++
T Consensus 19 ~~~~Figiv~wa~~p~~k~ 37 (48)
T cd01324 19 LALFFLGVVVWAFRPGRKK 37 (48)
T ss_pred HHHHHHHHHHHHhCCCcch
Confidence 4677889999988766543
Done!