Query 019468
Match_columns 340
No_of_seqs 129 out of 1195
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 16:33:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019468.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019468hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.7 3.7E-08 1.3E-12 78.6 8.7 65 231-295 40-105 (137)
2 3b5d_A Multidrug transporter E 98.3 1E-06 3.5E-11 67.6 7.1 68 90-157 37-105 (110)
3 2i68_A Protein EMRE; transmemb 98.2 7.8E-07 2.7E-11 70.8 3.9 67 90-156 37-104 (137)
4 3b5d_A Multidrug transporter E 98.1 2.7E-05 9.3E-10 59.6 10.7 62 233-294 42-104 (110)
5 2l2t_A Receptor tyrosine-prote 33.1 24 0.00081 21.5 1.9 12 282-293 24-35 (44)
6 2ks1_B Epidermal growth factor 26.3 36 0.0012 20.7 1.9 6 287-292 30-35 (44)
7 3l1l_A Arginine/agmatine antip 21.9 1.1E+02 0.0037 27.8 5.3 24 276-299 409-432 (445)
8 4djk_A Probable glutamate/gamm 15.5 67 0.0023 30.0 2.2 17 278-294 449-465 (511)
9 3rko_J NADH-quinone oxidoreduc 12.2 1.1E+02 0.0037 24.8 2.3 24 262-285 127-150 (184)
10 2h3o_A MERF; membrane protein, 11.5 90 0.0031 20.4 1.2 47 255-301 11-59 (61)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.73 E-value=3.7e-08 Score=78.56 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhcccchhHHHHH-hhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhhhh
Q 019468 231 AVFCNVSQYLCIGRFSAVTFQVL-GHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSWAI 295 (340)
Q Consensus 231 ~~~~~~~~~~~l~~~~~~~~si~-~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~~ 295 (340)
..+.+++....+++.++..+..+ ..+.|++++++|++++||++++.+++|++++++|+++.+..+
T Consensus 40 ~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44556666778999999988777 899999999999999999999999999999999999987543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.34 E-value=1e-06 Score=67.61 Aligned_cols=68 Identities=13% Similarity=0.195 Sum_probs=61.3
Q ss_pred HHHHHHHhhhhhhhhccchhhHHHHH-hhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeecc
Q 019468 90 SIVANTSISGMNFSLMLNSVGFYQIS-KLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVTD 157 (340)
Q Consensus 90 ~l~~~~~~~~~~~al~~~~~~~~~~l-~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~~ 157 (340)
.+.+.....++..++++.|.+.+..+ ..+.|+++++++++++||++++.+++++.++++|+.+....+
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34567778888999999999999988 899999999999999999999999999999999999876543
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.21 E-value=7.8e-07 Score=70.84 Aligned_cols=67 Identities=13% Similarity=0.196 Sum_probs=49.8
Q ss_pred HHHHHHHhhhhhhhhccchhhHHHHH-hhhhHHHHHHHHHHHhCcccChhhhHHHHHHhhhheeeeec
Q 019468 90 SIVANTSISGMNFSLMLNSVGFYQIS-KLSMIPVVCVMEWILHGKKYSKEVKMAVVVVVVGVGVCTVT 156 (340)
Q Consensus 90 ~l~~~~~~~~~~~al~~~~~~~~~~l-~~~~Pi~~~ll~~l~~~e~~~~~~~~~l~l~~~Gv~l~~~~ 156 (340)
.+...+...+++.+++++|++.+..+ ..+.|++++++++++++|++++.++++++++++|+.++...
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34567788899999999999999888 89999999999999999999999999999999999887543
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.11 E-value=2.7e-05 Score=59.56 Aligned_cols=62 Identities=16% Similarity=0.234 Sum_probs=53.6
Q ss_pred HHHHHHHHhhcccchhHHHHH-hhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHHHhhh
Q 019468 233 FCNVSQYLCIGRFSAVTFQVL-GHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIVYSWA 294 (340)
Q Consensus 233 ~~~~~~~~~l~~~~~~~~si~-~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l~~~~ 294 (340)
...++....+++.+...+..+ ..+.|+.+.+.|++++||+++..+++|+++++.|++..+..
T Consensus 42 ~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 42 ASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 344455567899988888776 89999999999999999999999999999999999998653
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=33.14 E-value=24 Score=21.55 Aligned_cols=12 Identities=25% Similarity=0.340 Sum_probs=4.9
Q ss_pred hHHhHhHHHHhh
Q 019468 282 TVAVLGMIVYSW 293 (340)
Q Consensus 282 ~lil~Gv~l~~~ 293 (340)
+++.++.++|.+
T Consensus 24 ~ii~~~~~~~~R 35 (44)
T 2l2t_A 24 VIVGLTFAVYVR 35 (44)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 334444444443
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=26.28 E-value=36 Score=20.72 Aligned_cols=6 Identities=17% Similarity=0.562 Sum_probs=2.3
Q ss_pred hHHHHh
Q 019468 287 GMIVYS 292 (340)
Q Consensus 287 Gv~l~~ 292 (340)
+.++|.
T Consensus 30 ~~~~~~ 35 (44)
T 2ks1_B 30 GIGLFM 35 (44)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 333443
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=21.93 E-value=1.1e+02 Score=27.82 Aligned_cols=24 Identities=4% Similarity=0.086 Sum_probs=17.3
Q ss_pred cchhhhhHHhHhHHHHhhhhhhhh
Q 019468 276 KNILGMTVAVLGMIVYSWAIEAEK 299 (340)
Q Consensus 276 ~~~iG~~lil~Gv~l~~~~~~~~~ 299 (340)
..+.|..+++.|+.+|...+++.+
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 355688888889988877665543
No 8
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=15.47 E-value=67 Score=29.98 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=7.8
Q ss_pred hhhhhHHhHhHHHHhhh
Q 019468 278 ILGMTVAVLGMIVYSWA 294 (340)
Q Consensus 278 ~iG~~lil~Gv~l~~~~ 294 (340)
.++.++++.++.++.+.
T Consensus 449 ~~~~~~~~~~i~~~~~~ 465 (511)
T 4djk_A 449 LVVSFLVVLALPFILYA 465 (511)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444445544433
No 9
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=12.17 E-value=1.1e+02 Score=24.83 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=19.1
Q ss_pred HHHHHHhhCccccccchhhhhHHh
Q 019468 262 LTLGWLLFDSQLTVKNILGMTVAV 285 (340)
Q Consensus 262 ~~~s~~l~ge~~s~~~~iG~~lil 285 (340)
--+|..++++.+-+.++.|..+..
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLv 150 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLA 150 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888889998889999888753
No 10
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=11.53 E-value=90 Score=20.37 Aligned_cols=47 Identities=13% Similarity=0.251 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhhCccccccc--hhhhhHHhHhHHHHhhhhhhhhcC
Q 019468 255 HMKTVCILTLGWLLFDSQLTVKN--ILGMTVAVLGMIVYSWAIEAEKRK 301 (340)
Q Consensus 255 ~~~~v~~~~~s~~l~ge~~s~~~--~iG~~lil~Gv~l~~~~~~~~~~~ 301 (340)
.+.|++++++|..=+...+++.. ++=..-.++|...|...|++++..
T Consensus 11 C~tPvLvil~G~~Glsa~~~wLd~vl~P~l~~figl~~Y~~~r~~~~~~ 59 (61)
T 2h3o_A 11 SFTPVLVILLGVVGLSALTGYLDYVLLPALAIFIGLTIYAIQRKRQADA 59 (61)
T ss_dssp -----CHHHHHHHHHHHHHHHSSSSCCTTHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Done!