Query 019468
Match_columns 340
No_of_seqs 129 out of 1195
Neff 8.8
Searched_HMMs 13730
Date Mon Mar 25 16:33:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019468.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019468hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 22.2 44 0.0032 16.1 3.1 21 163-183 3-23 (27)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 12.3 2.2E+02 0.016 22.0 6.5 54 85-142 4-57 (248)
3 d1iwga7 f.35.1.1 (A:7-37,A:331 8.3 3.6E+02 0.026 19.5 6.4 49 242-290 60-108 (199)
4 d1fftb2 f.17.2.1 (B:27-117) Cy 6.0 1.4E+02 0.01 19.2 2.1 15 284-298 31-45 (91)
5 d1iwga8 f.35.1.1 (A:513-566,A: 5.6 5.3E+02 0.038 18.9 8.2 30 260-290 96-125 (222)
6 d1pv7a_ f.38.1.2 (A:) Lactose 3.4 8.2E+02 0.06 18.1 13.2 21 132-152 283-303 (417)
7 d2p7tc1 f.14.1.1 (C:86-119) Po 3.3 3.1E+02 0.022 13.6 1.7 13 138-150 3-15 (34)
8 d1v2xa_ c.116.1.1 (A:) tRNA (G 2.5 4.2E+02 0.031 19.0 2.6 14 286-299 157-170 (191)
9 d1gl4a1 d.22.1.2 (A:399-631) D 2.4 2.2E+02 0.016 22.0 0.6 38 101-139 42-79 (233)
10 d3dtub2 f.17.2.1 (B:30-129) Ba 2.4 5.5E+02 0.04 16.1 2.8 37 278-315 36-72 (100)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=22.21 E-value=44 Score=16.13 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhc
Q 019468 163 KGFICACVAVFSTSLQQIDMK 183 (340)
Q Consensus 163 ~G~~l~l~s~~~~a~~~v~~k 183 (340)
.|.+..-++.++||.|.-+-|
T Consensus 3 lgli~~tl~glf~aayqqykr 23 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQYKR 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS
T ss_pred eeehHHHHHHHHHHHHHHhcC
Confidence 588888899999999877544
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=12.31 E-value=2.2e+02 Score=22.05 Aligned_cols=54 Identities=6% Similarity=-0.133 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhhhHH
Q 019468 85 ELFWFSIVANTSISGMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEVKMA 142 (340)
Q Consensus 85 ~~~~~~l~~~~~~~~~~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~~~~ 142 (340)
++..+|++.++..+.....+..-....+.+ .-+.+.++.++++.+|.-+.|++.
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~~----~~~~~~~~~~vy~s~r~~p~kyi~ 57 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAIT----TLILSSAGLYIFANRKAYAWRYVY 57 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHHH----HHHHHHHHHHHHSSSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHH----HHHHHHheEEEEEccCccceehhh
Confidence 356778877777666655555555444433 334567777888888887877764
No 3
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=8.33 E-value=3.6e+02 Score=19.54 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=33.1
Q ss_pred hcccchhHHHHHhhhHHHHHHHHHHHhhCccccccchhhhhHHhHhHHH
Q 019468 242 IGRFSAVTFQVLGHMKTVCILTLGWLLFDSQLTVKNILGMTVAVLGMIV 290 (340)
Q Consensus 242 l~~~~~~~~si~~~~~~v~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l 290 (340)
.+..-+.....+...-.+........++|.+++.....+..+.+....-
T Consensus 60 ~rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd 108 (199)
T d1iwga7 60 LQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVD 108 (199)
T ss_dssp CCCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhcc
Confidence 4545455555555555566667777888999999888888877654443
No 4
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=5.96 E-value=1.4e+02 Score=19.16 Aligned_cols=15 Identities=13% Similarity=-0.301 Sum_probs=7.6
Q ss_pred HhHhHHHHhhhhhhh
Q 019468 284 AVLGMIVYSWAIEAE 298 (340)
Q Consensus 284 il~Gv~l~~~~~~~~ 298 (340)
...|...|...|.|+
T Consensus 31 ~V~~~~~~~~~ryR~ 45 (91)
T d1fftb2 31 PAILMAVGFAWKYRA 45 (91)
T ss_dssp HHHHHHHTTTTTTTT
T ss_pred HHHHHHHhhheeeec
Confidence 344555555555544
No 5
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.64 E-value=5.3e+02 Score=18.91 Aligned_cols=30 Identities=13% Similarity=0.035 Sum_probs=22.3
Q ss_pred HHHHHHHHhhCccccccchhhhhHHhHhHHH
Q 019468 260 CILTLGWLLFDSQLTVKNILGMTVAVLGMIV 290 (340)
Q Consensus 260 ~~~~~s~~l~ge~~s~~~~iG~~lil~Gv~l 290 (340)
+..+.+..+.|.+++....+|.++.+ |+..
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~-Gi~v 125 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTI-GLSA 125 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchh-hhhh
Confidence 45667777889999999988888864 4443
No 6
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.44 E-value=8.2e+02 Score=18.09 Aligned_cols=21 Identities=5% Similarity=0.113 Sum_probs=11.3
Q ss_pred CcccChhhhHHHHHHhhhhee
Q 019468 132 GKKYSKEVKMAVVVVVVGVGV 152 (340)
Q Consensus 132 ~e~~~~~~~~~l~l~~~Gv~l 152 (340)
.+|..+++.+.+...+.++..
T Consensus 283 ~~r~~~~~~~~~~~~~~~~~~ 303 (417)
T d1pv7a_ 283 INRIGGKNALLLAGTIMSVRI 303 (417)
T ss_dssp HHHHCHHHHHHHHHHHHHHHH
T ss_pred hcccccccchhhhHHHHHHhh
Confidence 356666666555555444443
No 7
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=3.26 E-value=3.1e+02 Score=13.57 Aligned_cols=13 Identities=46% Similarity=0.601 Sum_probs=6.8
Q ss_pred hhhHHHHHHhhhh
Q 019468 138 EVKMAVVVVVVGV 150 (340)
Q Consensus 138 ~~~~~l~l~~~Gv 150 (340)
.++.++.+.++|+
T Consensus 3 grcvavvvmvagi 15 (34)
T d2p7tc1 3 GRCVAVVVMVAGI 15 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ceEEEEEEEEecc
Confidence 3455555555553
No 8
>d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus thermophilus [TaxId: 274]}
Probab=2.50 E-value=4.2e+02 Score=18.97 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=8.8
Q ss_pred HhHHHHhhhhhhhh
Q 019468 286 LGMIVYSWAIEAEK 299 (340)
Q Consensus 286 ~Gv~l~~~~~~~~~ 299 (340)
+|+++|.+.+++.+
T Consensus 157 a~I~lyE~~rq~~~ 170 (191)
T d1v2xa_ 157 AAVILFEAQRQRLK 170 (191)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 46677877665543
No 9
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.42 E-value=2.2e+02 Score=21.99 Aligned_cols=38 Identities=3% Similarity=-0.169 Sum_probs=31.7
Q ss_pred hhhhccchhhHHHHHhhhhHHHHHHHHHHHhCcccChhh
Q 019468 101 NFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKKYSKEV 139 (340)
Q Consensus 101 ~~al~~~~~~~~~~l~~~~Pi~~~ll~~l~~~e~~~~~~ 139 (340)
+.|+..+|.+....++.+.|+. ..++|+|-+|......
T Consensus 42 ytaIs~IP~~~G~~L~~L~~ig-~~igWlFA~e~~~a~N 79 (233)
T d1gl4a1 42 YTAISTIPETVGYSLLPLAPIG-GIIGWMFAVEQDGFKN 79 (233)
T ss_dssp EEEEESCCHHHHGGGTTCTHHH-HHHHHHTCEECTTCCC
T ss_pred EEEccCCChhHhhhhhhhhhhc-CceeeeEEeecCCccC
Confidence 5778899999999999999976 6678999988876553
No 10
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.40 E-value=5.5e+02 Score=16.14 Aligned_cols=37 Identities=24% Similarity=0.142 Sum_probs=0.0
Q ss_pred hhhhhHHhHhHHHHhhhhhhhhcCCCCCccccccccch
Q 019468 278 ILGMTVAVLGMIVYSWAIEAEKRKPDSKTIGHTKNNLL 315 (340)
Q Consensus 278 ~iG~~lil~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (340)
..++.++..|...|...+.|.++.+ ....-......|
T Consensus 36 ~~~I~~~V~~~l~~~~~~~r~~~~~-~~~~~~~n~~LE 72 (100)
T d3dtub2 36 IAAITIFVTLLILYAVWRFHEKRNK-VPARFTHNSPLE 72 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHBTTTCC-SCCCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCC-CCccccCcchHH
Done!