BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019469
(340 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LA53|MBD2_ARATH Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis
thaliana GN=MBD2 PE=1 SV=1
Length = 272
Score = 286 bits (733), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 139/258 (53%), Positives = 179/258 (69%), Gaps = 17/258 (6%)
Query: 68 QLVLYDPTANGTSEIEPVPESFQYNRAPFGRYSGPNTQSRVLPSVGAFTVQCADCFKWRL 127
QLV+YD N +E E +P Q P + PS+GAFTVQCA CFKWRL
Sbjct: 23 QLVVYDLKGNDDTEEEVLPVQSQ-----------PLSSRTQCPSIGAFTVQCASCFKWRL 71
Query: 128 IPTKEKYEEIREHVLENPFTCEKAREWRPDVSCDDPTDISQDGSRLWAIDKPNIAQPPPG 187
+P+ +KYEEIRE +LENPF C+ AREW+PD+SCD P DI QDG+RLWAIDKPNI++PP G
Sbjct: 72 MPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDGTRLWAIDKPNISRPPAG 131
Query: 188 WQRLLRIRGEGSTKFADVYYEAPSGKKLRSMVEIQKYFLEHPEYARAGVKMSQFSFQIPK 247
WQRLLRIRGEG T+FADVYY APSGKKLRS VE+QKY ++ EY GVK+SQFSFQIPK
Sbjct: 132 WQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNSEYIGEGVKLSQFSFQIPK 191
Query: 248 PLQENYVRKRVPKAHTSHDTPKALEPRAVSPLSWVSPDNFTDLQLGRPALPAPPVEAPIS 307
PLQ++YVRKR + S D + +PL+W+SPD+ LQLG P E+ ++
Sbjct: 192 PLQDDYVRKRPARLLDSIDNTNTPVAKEANPLAWISPDDHISLQLG------TPTESGLN 245
Query: 308 DPNPRPAKQARRAPKQMY 325
+ + +P+K+ + + ++
Sbjct: 246 NSHYQPSKKKKTSTLSIF 263
>sp|Q9FZP6|MBD12_ARATH Putative methyl-CpG-binding domain protein 12 OS=Arabidopsis
thaliana GN=MBD12 PE=3 SV=1
Length = 155
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/144 (52%), Positives = 92/144 (63%), Gaps = 11/144 (7%)
Query: 117 VQCADCFKWRLIPTKEKYEEIREHVLENPFTCEKAREWRPDVSCDDPTDISQDGSRL--W 174
VQC DC KWRLIP+ + Y I+E L+ PF C W P++SC+ P QDG+ W
Sbjct: 2 VQCTDCKKWRLIPSMQHYNIIKETQLQTPFVCGTTSGWTPNMSCNVP----QDGTTCDTW 57
Query: 175 AIDKPNIAQPPPGWQRLLRIRGEGSTKFADVYYEAPSGKKLRSMVEIQKYFLEHPEYARA 234
P+I P GW R + IR E STKFADVYY PSG++LRS E+Q + HPEY R
Sbjct: 58 ----PSIPPIPTGWSRSVHIRSE-STKFADVYYFPPSGERLRSSAEVQSFLDNHPEYVRE 112
Query: 235 GVKMSQFSFQIPKPLQENYVRKRV 258
GV SQFSFQIPKPL +NYV+KR
Sbjct: 113 GVNRSQFSFQIPKPLDDNYVKKRT 136
>sp|Q9LYB9|MBD4_ARATH Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis
thaliana GN=MBD4 PE=2 SV=1
Length = 186
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 87/140 (62%), Gaps = 8/140 (5%)
Query: 112 VGAFTVQCADCFKWRLIPTKEKYEEIREHVLENPFTCEKAREWRPDVSCDDPTDISQDGS 171
+ + QC +C KWR+I ++E+YE+IR +LE+PF C+K + +SC++P DI D S
Sbjct: 25 IDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNCQK----KQGMSCEEPADIDYDSS 80
Query: 172 RLWAIDKPNIAQPPPGWQRLLRIRGEGSTKFADVYYEAPSGKKLRSMVEIQKYFLEHPEY 231
R W IDKP + + P G++R L +R + S D YY P+GKKLRS EI + +PE+
Sbjct: 81 RTWVIDKPGLPKTPKGFKRSLVLRKDYSK--MDTYYFTPTGKKLRSRNEIAAFVEANPEF 138
Query: 232 ARAGVKMSQFSFQIPKPLQE 251
A + F+F +PK +++
Sbjct: 139 RNA--PLGDFNFTVPKVMED 156
>sp|Q5XEN5|MBD1_ARATH Methyl-CpG-binding domain-containing protein 1 OS=Arabidopsis
thaliana GN=MBD1 PE=2 SV=1
Length = 204
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 91/159 (57%), Gaps = 13/159 (8%)
Query: 111 SVGAFTVQCADCFKWRLIPTKEKYEEIREHVLENPFTCEKAREWRPDVSCDDPTDISQDG 170
S+ F VQC C KWR I T+++YE+IR V E+PF C K +E VSC+D D++ D
Sbjct: 51 SIDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFC-KTKE---GVSCEDVGDLNYDS 106
Query: 171 SRLWAIDKPNIAQPPPGWQRLLRIRGEGSTKFADVYYEAPSGKKLRSMVEIQKYFLEHPE 230
SR W IDKP + + P G++R L +R + S D YY P+GKKL+S EI + + +
Sbjct: 107 SRTWVIDKPGLPRTPRGFKRSLILRKDYSK--MDAYYITPTGKKLKSRNEIAAFIDANQD 164
Query: 231 YARAGVKMSQFSFQIPKPLQENYVRKRVPKAHTSHDTPK 269
Y A + F+F +PK ++E VP S TPK
Sbjct: 165 YKYA--LLGDFNFTVPKVMEET-----VPSGILSDRTPK 196
>sp|Q4PSK1|MBD3_ARATH Methyl-CpG-binding domain-containing protein 3 OS=Arabidopsis
thaliana GN=MBD3 PE=2 SV=1
Length = 163
Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 112 VGAFTVQCADCFKWRLIPTKEKYEEIREHVLENPFTCEKAREWRPDVSCDDPTDISQDGS 171
+ ++ QC C K R I ++E YEEIR LE F C++ C++P D+ +
Sbjct: 9 IDSYAAQCWKCLKVRSIESQEDYEEIRSKTLEKFFECKR---------CEEPGDMVMNFD 59
Query: 172 RL---WAIDKPNIAQPPPGWQRLLRIRGEGSTKFADVYYE--APSGKKLRSMVEIQKYFL 226
L W D+ +I + P G +R+L +R DVYYE AP K+ +S+ E+ +
Sbjct: 60 SLTMRWFQDEHSIPKTPQGLKRVLVVRTNCVK--VDVYYESLAPRRKRFKSIKEVATFIE 117
Query: 227 EHPEYARAGVKMSQFS 242
+ E+ ++ F+
Sbjct: 118 DKEEFKDMTLEEVSFA 133
>sp|Q9Z2E1|MBD2_MOUSE Methyl-CpG-binding domain protein 2 OS=Mus musculus GN=Mbd2 PE=2
SV=2
Length = 414
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 12/78 (15%)
Query: 185 PPGWQRLLRIRGEG-STKFADVYYEAPSGKKLRSMVEIQKYFLEHPEYARAGVKMSQFSF 243
PPGW++ IR G S +DVYY +PSGKK RS ++ +Y V +S F F
Sbjct: 159 PPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGN-------AVDLSSFDF 211
Query: 244 Q----IPKPLQENYVRKR 257
+ +P LQ+N R R
Sbjct: 212 RTGKMMPSKLQKNKQRLR 229
>sp|Q9UBB5|MBD2_HUMAN Methyl-CpG-binding domain protein 2 OS=Homo sapiens GN=MBD2 PE=1
SV=1
Length = 411
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 12/78 (15%)
Query: 185 PPGWQRLLRIRGEG-STKFADVYYEAPSGKKLRSMVEIQKYFLEHPEYARAGVKMSQFSF 243
PPGW++ IR G S +DVYY +PSGKK RS ++ +Y V +S F F
Sbjct: 156 PPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGNT-------VDLSSFDF 208
Query: 244 Q----IPKPLQENYVRKR 257
+ +P LQ+N R R
Sbjct: 209 RTGKMMPSKLQKNKQRLR 226
>sp|Q9Z2E2|MBD1_MOUSE Methyl-CpG-binding domain protein 1 OS=Mus musculus GN=Mbd1 PE=1
SV=2
Length = 636
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 186 PGWQRLLRIRGEGST-KFADVYYEAPSGKKLRSMVEIQKYFLEHPEYARAGVKMSQFSFQ 244
PGW+R R G++ +D+YY++P+G+K+RS VE+ +Y + +
Sbjct: 13 PGWKRRESFRKSGASFGRSDIYYQSPTGEKIRSKVELTRYLGPACDLTLFDFRQGTLCHP 72
Query: 245 IPK 247
IPK
Sbjct: 73 IPK 75
>sp|Q9UIF8|BAZ2B_HUMAN Bromodomain adjacent to zinc finger domain protein 2B OS=Homo
sapiens GN=BAZ2B PE=1 SV=3
Length = 2168
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 22/39 (56%)
Query: 187 GWQRLLRIRGEGSTKFADVYYEAPSGKKLRSMVEIQKYF 225
GWQR RIR G +V Y AP GKKLR E+ KY
Sbjct: 752 GWQRETRIRNFGGRLQGEVAYYAPCGKKLRQYPEVIKYL 790
>sp|Q9UIS9|MBD1_HUMAN Methyl-CpG-binding domain protein 1 OS=Homo sapiens GN=MBD1 PE=1
SV=2
Length = 605
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 176 IDKPNIAQPPPGWQRLLRIRGEGST-KFADVYYEAPSGKKLRSMVEIQKYF 225
+D P + PGW+R R G+T +D YY++P+G ++RS VE+ +Y
Sbjct: 6 LDCPALG---PGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYL 53
>sp|Q9LTJ1|MBD6_ARATH Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis
thaliana GN=MBD6 PE=1 SV=1
Length = 225
Score = 39.7 bits (91), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 185 PPGWQRLLRIRGEGSTKFA--DVYYEAPSGKKLRSMVEIQKYFLEHPEYARAGVKMSQFS 242
PPGW+ +IR G+T + YYE +G+K RS E+ Y+LEH R G K ++ +
Sbjct: 82 PPGWRVEDKIRTSGATAGSVDKYYYEPNTGRKFRSRTEVL-YYLEHGTSKR-GTKKAENT 139
Query: 243 FQIPKPLQ 250
+ P +
Sbjct: 140 YFNPDHFE 147
>sp|Q9Z2D7|MBD4_MOUSE Methyl-CpG-binding domain protein 4 OS=Mus musculus GN=Mbd4 PE=1
SV=1
Length = 554
Score = 38.5 bits (88), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 185 PPGWQRLL--RIRGEGSTKFADVYYEAPSGKKLRSMVEIQKYFLEHPEYARAGVKMSQFS 242
P GW+R++ R+ G+ + KF DVY+ +P G K RS + Y L++ E +K F+
Sbjct: 74 PCGWERVVKQRLSGKTAGKF-DVYFISPQGLKFRSKRSLANYLLKNGE---TFLKPEDFN 129
Query: 243 FQI 245
F +
Sbjct: 130 FTV 132
>sp|Q9SNC0|MBD5_ARATH Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis
thaliana GN=MBD5 PE=1 SV=1
Length = 182
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 185 PPGWQRLLRIRGEGSTKFADV---YYEAPSGKKLRSMVEIQKYFLEHPEYARAGVKMSQ 240
PP W+ +R+R G TK V YYE +G+K RS E+ Y+LEH + VK ++
Sbjct: 36 PPDWRTEIRVRTSG-TKAGTVDKFYYEPITGRKFRSKNEVL-YYLEHGTPKKKSVKTAE 92
>sp|Q9DE13|BAZ2B_CHICK Bromodomain adjacent to zinc finger domain protein 2B OS=Gallus
gallus GN=BAZ2B PE=2 SV=1
Length = 2130
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 21/37 (56%)
Query: 187 GWQRLLRIRGEGSTKFADVYYEAPSGKKLRSMVEIQK 223
GWQR RIR G +V Y AP GKKLR E+ K
Sbjct: 700 GWQRETRIRNFGGRLQGEVAYFAPCGKKLRQYPEVVK 736
>sp|O95983|MBD3_HUMAN Methyl-CpG-binding domain protein 3 OS=Homo sapiens GN=MBD3 PE=1
SV=1
Length = 291
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 185 PPGWQRLLRIRGEG-STKFADVYYEAPSGKKLRSMVEIQKYFLEHPEYARAGVKMSQFSF 243
P GW+R R G S DV+Y +PSGKK RS ++ +Y + +S F F
Sbjct: 12 PQGWEREEVPRRSGLSAGHRDVFYYSPSGKKFRSKPQLARYL-------GGSMDLSTFDF 64
Query: 244 QIPKPL--QENYVRKRV 258
+ K L + N R+RV
Sbjct: 65 RTGKMLMSKMNKSRQRV 81
>sp|Q9Z2D8|MBD3_MOUSE Methyl-CpG-binding domain protein 3 OS=Mus musculus GN=Mbd3 PE=1
SV=1
Length = 285
Score = 36.6 bits (83), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 185 PPGWQRLLRIRGEG-STKFADVYYEAPSGKKLRSMVEIQKYFLEHPEYARAGVKMSQFSF 243
P GW+R R G S DV+Y +PSGKK RS ++ +Y + +S F F
Sbjct: 12 PQGWEREEVPRRSGLSAGHRDVFYYSPSGKKFRSKPQLARYL-------GGSMDLSTFDF 64
Query: 244 QIPKPLQE--NYVRKRV 258
+ K L N R+RV
Sbjct: 65 RTGKMLMNKMNKSRQRV 81
>sp|Q9Z2D6|MECP2_MOUSE Methyl-CpG-binding protein 2 OS=Mus musculus GN=Mecp2 PE=1 SV=1
Length = 484
Score = 35.8 bits (81), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 185 PPGWQRLLRIRGEG-STKFADVYYEAPSGKKLRSMVEIQKYF 225
P GW R L+ R G S DVY P GK RS VE+ YF
Sbjct: 101 PEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYF 142
>sp|Q00566|MECP2_RAT Methyl-CpG-binding protein 2 OS=Rattus norvegicus GN=Mecp2 PE=1
SV=1
Length = 492
Score = 35.8 bits (81), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 185 PPGWQRLLRIRGEG-STKFADVYYEAPSGKKLRSMVEIQKYF 225
P GW R L+ R G S DVY P GK RS VE+ YF
Sbjct: 101 PEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYF 142
>sp|B7ZS37|BAZ2A_XENLA Bromodomain adjacent to zinc finger domain protein 2A OS=Xenopus
laevis GN=baz2a PE=2 SV=1
Length = 1698
Score = 35.8 bits (81), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 187 GWQRLLRIRGEGSTKF-ADVYYEAPSGKKLRSMVEIQKYFLEHPEYARAGVKMSQFSFQI 245
GW+R +RI+ +GS ++ + +Y AP GK+++ E+ KY ++ A V+ FSF
Sbjct: 431 GWRREVRIK-KGSHRWQGETWYYAPCGKRMKQFPEVIKYLSKN---AGPFVRREHFSFSP 486
Query: 246 PKPLQENY 253
P+ + Y
Sbjct: 487 RMPVGDFY 494
>sp|Q95LG8|MECP2_MACFA Methyl-CpG-binding protein 2 OS=Macaca fascicularis GN=MECP2 PE=2
SV=1
Length = 486
Score = 35.8 bits (81), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 185 PPGWQRLLRIRGEG-STKFADVYYEAPSGKKLRSMVEIQKYF 225
P GW R L+ R G S DVY P GK RS VE+ YF
Sbjct: 101 PEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYF 142
>sp|P51608|MECP2_HUMAN Methyl-CpG-binding protein 2 OS=Homo sapiens GN=MECP2 PE=1 SV=1
Length = 486
Score = 35.4 bits (80), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 185 PPGWQRLLRIRGEG-STKFADVYYEAPSGKKLRSMVEIQKYF 225
P GW R L+ R G S DVY P GK RS VE+ YF
Sbjct: 101 PEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYF 142
>sp|Q91YE5|BAZ2A_MOUSE Bromodomain adjacent to zinc finger domain protein 2A OS=Mus
musculus GN=Baz2a PE=1 SV=2
Length = 1889
Score = 35.4 bits (80), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 187 GWQRLLRIRGEGSTKF-ADVYYEAPSGKKLRSMVEIQKYFLEHPEYARAGVKMSQFSFQI 245
GW+R +RI+ +GS ++ + +Y P GK+++ E+ KY + ++ V+ FSF
Sbjct: 551 GWRREVRIK-KGSHRWQGETWYYGPCGKRMKQFPEVIKYLSRNVVHS---VRREHFSFSP 606
Query: 246 PKPLQENYVRKRVPKA 261
P+ + + + P+
Sbjct: 607 RMPVGDFFEERDTPEG 622
>sp|Q2HFD4|MSH3_CHAGB DNA mismatch repair protein MSH3 OS=Chaetomium globosum (strain
ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL
1970) GN=MSH3 PE=3 SV=1
Length = 1156
Score = 35.4 bits (80), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 10/56 (17%)
Query: 138 REHVLENPFTCEKAREWRPDVSCDDPTDISQDGSRLWAIDKPNIAQPPPGWQRLLR 193
R+H+L N T E +R + TD S+ GS LWA+DK + PG +RLLR
Sbjct: 535 RQHMLINGTTLESLEVYR------NATDQSEKGSLLWALDK---TRTRPG-RRLLR 580
>sp|Q9UIF9|BAZ2A_HUMAN Bromodomain adjacent to zinc finger domain protein 2A OS=Homo
sapiens GN=BAZ2A PE=1 SV=4
Length = 1905
Score = 35.4 bits (80), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 187 GWQRLLRIRGEGSTKF-ADVYYEAPSGKKLRSMVEIQKYFLEHPEYARAGVKMSQFSFQI 245
GW+R +RI+ +GS ++ + +Y P GK+++ E+ KY + ++ V+ FSF
Sbjct: 559 GWRREVRIK-KGSHRWQGETWYYGPCGKRMKQFPEVIKYLSRNVVHS---VRREHFSFSP 614
Query: 246 PKPLQENYVRKRVPKA 261
P+ + + + P+
Sbjct: 615 RMPVGDFFEERDTPEG 630
>sp|O95243|MBD4_HUMAN Methyl-CpG-binding domain protein 4 OS=Homo sapiens GN=MBD4 PE=1
SV=1
Length = 580
Score = 34.7 bits (78), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 185 PPGWQRLL--RIRGEGSTKFADVYYEAPSGKKLRSMVEIQKYFLEHPEYARAGVKMSQFS 242
P GW+R++ R+ G+ + +F DVY+ +P G K RS + Y ++ E +K F
Sbjct: 87 PCGWERVVKQRLFGKTAGRF-DVYFISPQGLKFRSKSSLANYLHKNGE---TSLKPEDFD 142
Query: 243 FQI 245
F +
Sbjct: 143 FTV 145
>sp|Q86VD1|MORC1_HUMAN MORC family CW-type zinc finger protein 1 OS=Homo sapiens GN=MORC1
PE=2 SV=2
Length = 984
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 14/56 (25%)
Query: 81 EIEPVPESFQYNRAPFGRYSGPNTQSRVLPSVGAFTVQCADCFKWRLIPTKEKYEE 136
++E SFQY R Q+ +P F +QC C KWR++P+ Y+E
Sbjct: 462 DVEKPLNSFQYQRR----------QAMGIP----FIIQCDLCLKWRVLPSSTNYQE 503
>sp|Q9LW00|MBD11_ARATH Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis
thaliana GN=MBD11 PE=1 SV=1
Length = 254
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 185 PPGWQRLLRIRGEGSTKFADVYYEAPSGKKLRSMVEIQKYFLEHP 229
P W++L GS K +V + AP+G+++ + ++++Y HP
Sbjct: 15 PSSWKKLFYPNKVGSVKKTEVVFVAPTGEEISNRKQLEQYLKSHP 59
>sp|Q3TY92|MBD6_MOUSE Methyl-CpG-binding domain protein 6 OS=Mus musculus GN=Mbd6 PE=2
SV=2
Length = 1003
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 8/40 (20%)
Query: 187 GWQRLLRIRGEGSTKFADVYYEAPSGKKLRSMVEIQKYFL 226
GWQR +R EG+ VYY +PSG +L S+ + + Y L
Sbjct: 26 GWQRCVR---EGA-----VYYISPSGTELSSLEQTRSYLL 57
>sp|Q9WVL5|MORC1_MOUSE MORC family CW-type zinc finger protein 1 OS=Mus musculus GN=Morc1
PE=2 SV=1
Length = 950
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 87 ESFQYNRAPFGRYSGPNTQSRVLPSVGA-FTVQCADCFKWRLIPTKEKYEE 136
+ F+Y + S + Q R ++G F +QC C KWR++P+ Y+E
Sbjct: 452 DEFKYQHSKDTDSSLESLQWRRRQAMGIPFILQCDLCLKWRVLPSSSNYQE 502
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,574,695
Number of Sequences: 539616
Number of extensions: 6653331
Number of successful extensions: 16333
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 16202
Number of HSP's gapped (non-prelim): 185
length of query: 340
length of database: 191,569,459
effective HSP length: 118
effective length of query: 222
effective length of database: 127,894,771
effective search space: 28392639162
effective search space used: 28392639162
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)