BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019470
(340 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 337 bits (864), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 158/223 (70%), Positives = 184/223 (82%)
Query: 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRH 171
+++ RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI H
Sbjct: 1 MEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINH 60
Query: 172 DVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 231
DVVEPL +EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STS
Sbjct: 61 DVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTS 120
Query: 232 EVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYG 291
EVYGDP HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+G
Sbjct: 121 EVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFG 180
Query: 292 PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 334
PRM ++DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV
Sbjct: 181 PRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLV 223
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 328 bits (840), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 156/217 (71%), Positives = 176/217 (81%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 29 RILITGGAGFVGSHLTDKLXXDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 88
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLN LGLAKRVGAR LL STSEVYGDP
Sbjct: 89 YIEVDQIYHLASPASPPNYXYNPIKTLKTNTIGTLNXLGLAKRVGARLLLASTSEVYGDP 148
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
HPQ E YWG+VNPIG R+CYDEGKR AET Y + GVEVR+ARIFNT+GPR +
Sbjct: 149 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEGVEVRVARIFNTFGPRXHXN 208
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 334
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV
Sbjct: 209 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLV 245
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 118/229 (51%), Gaps = 24/229 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
+RIVVTGGAGF+GSHLVD+L+ G V+VVDN +GR+E F NP+ EL D+ +
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRRE-----FVNPSAELHVRDLKDY 55
Query: 177 LL---LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLLTSTSE 232
++ D ++H A P+ NVV T N+L A++ G R + S+S
Sbjct: 56 SWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSST 115
Query: 233 VYGDP--LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290
VYGD + P++E Y PI S Y K E + Y R GV R N
Sbjct: 116 VYGDADVIPTPEEEPY----KPI---SVYGAAKAAGEVMCATYARLFGVRCLAVRYANVV 168
Query: 291 GPRMCIDDGRVVSNFVAQALRKEP--LTVYGDGKQTRSFQFVSDLVRLT 337
GPR+ V+ +F+ + LR+ P L V GDG Q +S+ +V D V T
Sbjct: 169 GPRL---RHGVIYDFIMK-LRRNPNVLEVLGDGTQRKSYLYVRDAVEAT 213
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 111/229 (48%), Gaps = 28/229 (12%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
+RIVVTGGAGF+GSHLVD+L+ G V+VVD ++ + EL D+ +
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVD---------IVQRDTGGSAELHVRDLKDY 51
Query: 177 LL---LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLLTSTSE 232
++ D ++H A P+ NVV T N+L A++ G R + S+S
Sbjct: 52 SWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSST 111
Query: 233 VYGDP--LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290
VYGD + P++E Y PI S Y K E + Y R GV R N
Sbjct: 112 VYGDADVIPTPEEEPY----KPI---SVYGAAKAAGEVMCATYARLFGVRCLAVRYANVV 164
Query: 291 GPRMCIDDGRVVSNFVAQALRKEP--LTVYGDGKQTRSFQFVSDLVRLT 337
GPR+ V+ +F+ + LR+ P L V GDG Q +S+ +V D V T
Sbjct: 165 GPRL---RHGVIYDFIMK-LRRNPNVLEVLGDGTQRKSYLYVRDAVEAT 209
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 105/232 (45%), Gaps = 20/232 (8%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARG------DSVIVVDNF-FTGRKENVMHHFGNPNFELI 169
+R++VTGGAGF+GSH V +L+A D VIV+D+ + G + N+ +P +
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 170 RHDVVEPLLLE-----VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A 223
D+ + LL VD I H A + +TNV GT +L A G
Sbjct: 61 HGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG 120
Query: 224 RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRI 283
R + ST EVYG W +P+ S Y K ++ + YHR G++VRI
Sbjct: 121 RVVHVSTDEVYGS-----IDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRI 175
Query: 284 ARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVR 335
R N YGP + +++ FV L L +YGDG R + D R
Sbjct: 176 TRCCNNYGPYQHPE--KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCR 225
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 113/222 (50%), Gaps = 20/222 (9%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV----V 174
IVVTGGAGF+GSH+VD+L + + ++V+DN +G +E F N L++ D+ +
Sbjct: 4 IVVTGGAGFIGSHVVDKL-SESNEIVVIDNLSSGNEE-----FVNEAARLVKADLAADDI 57
Query: 175 EPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTSTSEV 233
+ L ++++H+A NP + + NV+ T +L ++ G +R + TSTS V
Sbjct: 58 KDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTV 117
Query: 234 YGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293
YG+ P E Y +PI S Y K E L Y ++ I R N G R
Sbjct: 118 YGEAKVIPTPEDY--PTHPI---SLYGASKLACEALIESYCHTFDMQAWIYRFANVIGRR 172
Query: 294 MCIDDGRVVSNFVAQALRK-EPLTVYGDGKQTRSFQFVSDLV 334
V+ +F+ + R E L + G+G+Q +S+ ++SD V
Sbjct: 173 ST---HGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCV 211
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 106/232 (45%), Gaps = 20/232 (8%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARG------DSVIVVDNF-FTGRKENVMHHFGNPNFELI 169
+R++VTGGAGF+GSH V +L+A D VIV+D+ + G + N+ +P +
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 170 RHDVVEPLLLE-----VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A 223
D+ + LL VD I H A + +TNV GT +L A G
Sbjct: 61 HGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG 120
Query: 224 RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRI 283
R + ST++VYG W +P+ S Y K ++ + YHR G++VRI
Sbjct: 121 RVVHVSTNQVYGS-----IDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRI 175
Query: 284 ARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVR 335
R N YGP + +++ FV L L +YGDG R + D R
Sbjct: 176 TRCCNNYGPYQHPE--KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCR 225
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 105/223 (47%), Gaps = 20/223 (8%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTG---RKENVMHHFGNPNFELIRHDVV 174
RI++TGGAGF+G HL L+A G+ V V+D+ E P EL D
Sbjct: 9 RILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERD-- 66
Query: 175 EPLLLEVDQIYHLACPAS-PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSE 232
L +V +YHLA S P +K P+ + NV ++L L VG + ++ ST E
Sbjct: 67 ---LSDVRLVYHLASHKSVPRSFK-QPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCE 121
Query: 233 VYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA-GVEVRIARIFNTYG 291
VYG P E +P+ RS Y K E + + R + EV I R FN YG
Sbjct: 122 VYGQADTLPTPED-----SPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFFNVYG 176
Query: 292 PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 334
P D +V A L + L V GDG+Q R F +++D+V
Sbjct: 177 PGERPD--ALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVV 217
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 24/237 (10%)
Query: 118 RIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVVE 175
+I++TGGAGF+GS LV +I D+V+VVD + G ++ + F + D+ +
Sbjct: 3 KILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICD 62
Query: 176 PLLL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA---------- 218
L + D + HLA + P I+TN+VGT +L A
Sbjct: 63 RAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTED 122
Query: 219 KRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAG 278
K+ RF ST EVYGD + ++ P S Y K +++ L + R G
Sbjct: 123 KKSAFRFHHISTDEVYGDL---HSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYG 179
Query: 279 VEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVR 335
+ I N YGP + +++ + AL + L VYG+G+Q R + +V D R
Sbjct: 180 LPTLITNCSNNYGPYHFPE--KLIPLMILNALAGKSLPVYGNGQQIRDWLYVEDHAR 234
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 27/246 (10%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGN-PNFELIRHDV--- 173
++++TGG GF+GS+L +++G +IV DN + +H + NFE + D+
Sbjct: 3 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNK 62
Query: 174 --VEPLLLEV--DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLL 227
V L+ + D +HLA + NP + NV GTLN+L ++ + +
Sbjct: 63 NDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIY 122
Query: 228 TSTSEVYGDPLQHPQKETY-----------WGNVNPIGVRSCYDEGKRTAETLTMDYHRG 276
+ST++VYGD Q+ ET + + S Y K A+ +DY R
Sbjct: 123 SSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARI 182
Query: 277 AGVEVRIARIFNTYGPR-MCIDDGRVVSNFVAQALR-----KEPLTVYGDGKQTRSFQFV 330
G+ + R + YG R D V F +A+ +P T+ G+GKQ R
Sbjct: 183 FGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHA 242
Query: 331 SDLVRL 336
D++ L
Sbjct: 243 EDMISL 248
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 110/239 (46%), Gaps = 19/239 (7%)
Query: 106 GKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF----FTGRKENVMHHF 161
G L + I+VTGGAGF+GS+ V + ++ ++ NF ++G NV
Sbjct: 14 GTENLYFQSNAXNILVTGGAGFIGSNFVHYXLQSYETYKII-NFDALTYSGNLNNVKSIQ 72
Query: 162 GNPNFELIRHDVVEPLLLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNM 214
+PN+ ++ ++ LLE V I + A + NP+ TNV+GT+ +
Sbjct: 73 DHPNYYFVKGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTL 132
Query: 215 LGLAKRV-GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDY 273
L L K+ + + ST EVYG K + P+ S Y K +A+ + + Y
Sbjct: 133 LELVKKYPHIKLVQVSTDEVYGSL----GKTGRFTEETPLAPNSPYSSSKASADXIALAY 188
Query: 274 HRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 332
++ + V + R N YGP + +++ V AL + L +YGDG R + V+D
Sbjct: 189 YKTYQLPVIVTRCSNNYGPYQYPE--KLIPLXVTNALEGKKLPLYGDGLNVRDWLHVTD 245
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 108/235 (45%), Gaps = 28/235 (11%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSV--IVVDNF-FTGRKENVMHHFGNPNFELIRHDV- 173
I+VTGGAGF+GS+ V + V V+D + G K N+ G+ EL+ D+
Sbjct: 6 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGD-RVELVVGDIA 64
Query: 174 ----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 229
V+ L + D I H A + + +P I TN +GT +L A++ RF S
Sbjct: 65 DAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVS 124
Query: 230 TSEVYGD-PLQHP---------QKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGV 279
T EVYGD PL+ +K T N NP S Y K ++ + + R GV
Sbjct: 125 TDEVYGDLPLREDLPGHGEGPGEKFTAETNYNP---SSPYSSTKAASDLIVKAWVRSFGV 181
Query: 280 EVRIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 332
+ I+ N YGP I+ R ++N +A K +YG+GK R + +D
Sbjct: 182 KATISNCSNNYGPYQHIEKFIPRQITNILAGIKPK----LYGEGKNVRDWIHTND 232
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 110/235 (46%), Gaps = 17/235 (7%)
Query: 116 GLRIVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNFFTGRK-ENVMHHFGNPNFELIRHD 172
++++VTGG GF+GS+ + ++ + VI +D G N+ +P + ++ D
Sbjct: 3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGD 62
Query: 173 V-----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARF 225
V V+ L+ +VD + HLA + +P + +NV+GT +L +R RF
Sbjct: 63 VADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRF 122
Query: 226 LLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIAR 285
+ ST EVYGD L+ E + + S Y K ++ L + + R + I R
Sbjct: 123 VHVSTDEVYGDILKGSFTEN-----DRLMPSSPYSATKAASDMLVLGWTRTYNLNASITR 177
Query: 286 IFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVRLTETI 340
N YGP + +++ + +A + +YG GK R + +V D VR E +
Sbjct: 178 CTNNYGPYQFPE--KLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELV 230
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 109/244 (44%), Gaps = 28/244 (11%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVV 174
++I++TGGAGF+GS +V +I D+V+ +D + G E++ + + D+
Sbjct: 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADIC 60
Query: 175 EPLLL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA---- 223
+ + + D + HLA + P I+TN+VGT +L +A++ +
Sbjct: 61 DSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGE 120
Query: 224 ------RFLLTSTSEVYGDPLQHPQKET------YWGNVNPIGVRSCYDEGKRTAETLTM 271
RF ST EVYGD L HP + + S Y K +++ L
Sbjct: 121 DKKNNFRFHHISTDEVYGD-LPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVR 179
Query: 272 DYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 331
+ R G+ + N YGP + +++ + AL +PL +YG G Q R + +V
Sbjct: 180 AWRRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKPLPIYGKGDQIRDWLYVE 237
Query: 332 DLVR 335
D R
Sbjct: 238 DHAR 241
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 107/239 (44%), Gaps = 17/239 (7%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV 174
+ L+I +TG GF+ SH+ RL G VI D + E++ F L+ V+
Sbjct: 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVM 84
Query: 175 EPLLL---EVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTS 229
E L VD +++LA + + + N + N + + NM+ A+ G RF S
Sbjct: 85 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 144
Query: 230 TSEVYGD--PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
++ +Y + L+ + P + Y K E L Y++ G+E RI R
Sbjct: 145 SACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFH 204
Query: 288 NTYGPRMCIDDGRVV--SNFVAQA-LRKEPLTVYGDGKQTRSFQFVSDLV----RLTET 339
N YGP GR + F +A + ++GDG QTRSF F+ + V RLT++
Sbjct: 205 NIYGPFGTWKGGREAAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKS 263
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 18/231 (7%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNF--ELIRHDVV 174
+R++VTGGAGF+GSH+V+ L+ARG V V+DN TG++ENV G P F +L + V
Sbjct: 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPK--GVPFFRVDLRDKEGV 58
Query: 175 EPLLLEV--DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS- 231
E E + H A AS +PV + N++G LN+L ++ G L+ +++
Sbjct: 59 ERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTG 118
Query: 232 -EVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290
+YG+ + + E W P +S Y K E Y + G++ R N Y
Sbjct: 119 GAIYGEVPEGERAEETW----PPRPKSPYAASKAAFEHYLSVYGQSYGLKWVSLRYGNVY 174
Query: 291 GPRMCID-DGRVVSNFVAQALRKEPLTVY-----GDGKQTRSFQFVSDLVR 335
GPR + VV+ F + L+ P+T+Y GD R + +V D+
Sbjct: 175 GPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAE 225
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 107/239 (44%), Gaps = 17/239 (7%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV 174
+ L+I +TG GF+ SH+ RL G VI D + E++ F L+ V+
Sbjct: 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVM 84
Query: 175 EPLLL---EVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTS 229
E L VD +++LA + + + N + N + + NM+ A+ G RF S
Sbjct: 85 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 144
Query: 230 TSEVYGD--PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
++ +Y + L+ + P + Y K E L Y++ G+E RI R
Sbjct: 145 SACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFH 204
Query: 288 NTYGPRMCIDDGR--VVSNFVAQA-LRKEPLTVYGDGKQTRSFQFVSDLV----RLTET 339
N YGP GR + F +A + ++GDG QTRSF F+ + V RLT++
Sbjct: 205 NIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKS 263
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 107/239 (44%), Gaps = 17/239 (7%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV 174
+ L+I +TG GF+ SH+ RL G VI D + E++ F L+ V+
Sbjct: 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVM 84
Query: 175 EPLLL---EVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTS 229
E L VD +++LA + + + N + N + + NM+ A+ G RF S
Sbjct: 85 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 144
Query: 230 TSEVYGD--PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
++ +Y + L+ + P + Y + E L Y++ G+E RI R
Sbjct: 145 SACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLERLATEELCKHYNKDFGIECRIGRFH 204
Query: 288 NTYGPRMCIDDGR--VVSNFVAQA-LRKEPLTVYGDGKQTRSFQFVSDLV----RLTET 339
N YGP GR + F +A + ++GDG QTRSF F+ + V RLT++
Sbjct: 205 NIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKS 263
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 107/239 (44%), Gaps = 17/239 (7%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV 174
+ L+I +TG GF+ SH+ RL G VI D + E++ F L+ V+
Sbjct: 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVM 84
Query: 175 EPLLL---EVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTS 229
E L VD +++LA + + + N + N + + NM+ A+ G RF S
Sbjct: 85 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 144
Query: 230 TSEVYGD--PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
++ +Y + L+ + P + + K E L Y++ G+E RI R
Sbjct: 145 SACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRFH 204
Query: 288 NTYGPRMCIDDGR--VVSNFVAQA-LRKEPLTVYGDGKQTRSFQFVSDLV----RLTET 339
N YGP GR + F +A + ++GDG QTRSF F+ + V RLT++
Sbjct: 205 NIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKS 263
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 107/241 (44%), Gaps = 31/241 (12%)
Query: 106 GKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPN 165
G +P G K ++ +TG G +GSH+ + L+ RGD V+ +DNF TGR+E++ H PN
Sbjct: 13 GLVPRGSHMK--KVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDH---PN 67
Query: 166 FELIR-----HDVVEPLL--LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA 218
+ H +V L+ L+ D + H A +N TN VG N++ A
Sbjct: 68 LTFVEGSIADHALVNQLIGDLQPDAVVHTAASYKDPDDWYN---DTLTNCVGGSNVVQAA 124
Query: 219 KRVG-ARFLLTSTSEVYG-DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG 276
K+ RF+ T+ YG P+Q P + + N S Y K E DY
Sbjct: 125 KKNNVGRFVYFQTALCYGVKPIQQPVRLDHPRNP----ANSSYAISKSANE----DYLEY 176
Query: 277 AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVRL 336
+G++ R+ N GPR G + F + K+ K R F FV DL R
Sbjct: 177 SGLDFVTFRLANVVGPRNV--SGPLPIFFQRLSEGKKCFVT----KARRDFVFVKDLARA 230
Query: 337 T 337
T
Sbjct: 231 T 231
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 19/232 (8%)
Query: 120 VVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN------VMHHFGNPNFELIRHDV 173
++TG AGF+GS+L+++L+ VI +DNF TG + N ++ F I D+
Sbjct: 42 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 101
Query: 174 -----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLL 227
E ++ VD + H A S +P+ T TN+ G LN+L AK + F
Sbjct: 102 RDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTY 161
Query: 228 TSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
++S YGD P+ E G NP+ S Y K E Y R G + R F
Sbjct: 162 AASSSTYGDHPALPKVEENIG--NPL---SPYAVTKYVNEIYAQVYARTYGFKTIGLRYF 216
Query: 288 NTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVRLT 337
N +G R + V+ + A L+ + + + GDG+ +R F ++ +++++
Sbjct: 217 NVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMN 268
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 19/231 (8%)
Query: 120 VVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN------VMHHFGNPNFELIRHDV 173
++TG AGF+GS+L+++L+ VI +DNF TG + N ++ F I D+
Sbjct: 29 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 88
Query: 174 -----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLL 227
E ++ VD + H A S +P+ T TN+ G LN+L AK + F
Sbjct: 89 RDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTY 148
Query: 228 TSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
++S YGD P+ E G NP+ S Y K E Y R G + R F
Sbjct: 149 AASSSTYGDHPALPKVEENIG--NPL---SPYAVTKYVNEIYAQVYARTYGFKTIGLRYF 203
Query: 288 NTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVRL 336
N +G R + V+ + A L+ + + + GDG+ +R F ++ +++++
Sbjct: 204 NVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQM 254
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 105/233 (45%), Gaps = 28/233 (12%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV--- 173
+R ++TG AGFVG +L + L + V+ F T R PN E+I D+
Sbjct: 13 MRALITGVAGFVGKYLANHLTEQN-----VEVFGTSRNNEAKL----PNVEMISLDIMDS 63
Query: 174 --VEPLLLEV--DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK--RVGARFLL 227
V+ ++ ++ D I+HLA +S N T TNV GTL++L + + R L
Sbjct: 64 QRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILT 123
Query: 228 TSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
+SE YG L + + P+ S Y K + L Y + G+++ R F
Sbjct: 124 IGSSEEYGMILPEESPVSEENQLRPM---SPYGVSKASVGMLARQYVKAYGMDIIHTRTF 180
Query: 288 NTYGPRMCIDDGRVVSNFVAQAL-----RKEPLTVYGDGKQTRSFQFVSDLVR 335
N GP + G V +F Q + ++EP+ G+ + R F V D+V+
Sbjct: 181 NHIGPGQSL--GFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQ 231
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 19/232 (8%)
Query: 120 VVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN------VMHHFGNPNFELIRHDV 173
++TG AGF+GS+L+++L+ VI +DNF TG + N ++ F I D+
Sbjct: 29 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 88
Query: 174 -----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLL 227
E ++ VD + H A S +P+ T TN+ G LN+L AK + F
Sbjct: 89 RDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTY 148
Query: 228 TSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
++S YGD P+ E G NP+ S Y K E Y R G + R F
Sbjct: 149 AASSSTYGDHPALPKVEENIG--NPL---SPYAVTKYVNEIYAQVYARTYGFKTIGLRYF 203
Query: 288 NTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVRLT 337
N +G R + V+ + A L+ + + + GDG+ +R F ++ +++++
Sbjct: 204 NVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMN 255
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 19/232 (8%)
Query: 120 VVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN------VMHHFGNPNFELIRHDV 173
++TG AGF+GS+L+++L+ VI +DNF TG + N ++ F I D+
Sbjct: 23 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI 82
Query: 174 -----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLL 227
E ++ VD + H A S +P+ T TN+ G LN+L AK + F
Sbjct: 83 RDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTY 142
Query: 228 TSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
++S YGD P+ E G NP+ S Y K E Y R G + R F
Sbjct: 143 AASSSTYGDHPALPKVEENIG--NPL---SPYAVTKYVNEIYAQVYARTYGFKTIGLRYF 197
Query: 288 NTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVRLT 337
N +G R + V+ + A L+ + + + GDG+ +R F ++ +++++
Sbjct: 198 NVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMN 249
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 111/245 (45%), Gaps = 32/245 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGA-GVEVRIA 284
+ST+ VYGD + P E++ P G +S Y + K E + D + + +
Sbjct: 121 FSSTATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 285 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 329
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 330 VSDLV 334
V DL
Sbjct: 236 VMDLA 240
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 102/242 (42%), Gaps = 17/242 (7%)
Query: 105 GGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNP 164
G P R+ R+++ G GF+G+HL +RL+ + + + ++H P
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH---P 58
Query: 165 NFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA 218
+F + D+ +E + + D + L A+P+ Y NP++ + + L ++
Sbjct: 59 HFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC 118
Query: 219 KRVGARFLLTSTSEVYGDPLQHPQKETYWG-NVNPIGV-RSCYDEGKRTAETLTMDYHRG 276
+ R + STSEVYG E + V P+ R Y K+ + + Y
Sbjct: 119 VKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEK 178
Query: 277 AGVEVRIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 330
G++ + R FN GPR+ I R ++ + + P+ + GKQ R F +
Sbjct: 179 EGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDI 238
Query: 331 SD 332
D
Sbjct: 239 RD 240
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 102/242 (42%), Gaps = 17/242 (7%)
Query: 105 GGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNP 164
G P R+ R+++ G GF+G+HL +RL+ + + + ++H P
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH---P 58
Query: 165 NFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA 218
+F + D+ +E + + D + L A+P+ Y NP++ + + L ++
Sbjct: 59 HFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC 118
Query: 219 KRVGARFLLTSTSEVYGDPLQHPQKETYWG-NVNPIGV-RSCYDEGKRTAETLTMDYHRG 276
+ R + STSEVYG E + V P+ R Y K+ + + Y
Sbjct: 119 VKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEK 178
Query: 277 AGVEVRIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 330
G++ + R FN GPR+ I R ++ + + P+ + GKQ R F +
Sbjct: 179 EGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDI 238
Query: 331 SD 332
D
Sbjct: 239 RD 240
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 102/242 (42%), Gaps = 17/242 (7%)
Query: 105 GGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNP 164
G P R+ R+++ G GF+G+HL +RL+ + + + ++H P
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH---P 58
Query: 165 NFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA 218
+F + D+ +E + + D + L A+P+ Y NP++ + + L ++
Sbjct: 59 HFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC 118
Query: 219 KRVGARFLLTSTSEVYGDPLQHPQKETYWG-NVNPIGV-RSCYDEGKRTAETLTMDYHRG 276
+ R + STSEVYG E + V P+ R Y K+ + + Y
Sbjct: 119 VKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEK 178
Query: 277 AGVEVRIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 330
G++ + R FN GPR+ I R ++ + + P+ + GKQ R F +
Sbjct: 179 EGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDI 238
Query: 331 SD 332
D
Sbjct: 239 RD 240
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 102/242 (42%), Gaps = 17/242 (7%)
Query: 105 GGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNP 164
G P R+ R+++ G GF+G+HL +RL+ + + + ++H P
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH---P 58
Query: 165 NFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA 218
+F + D+ +E + + D + L A+P+ Y NP++ + + L ++
Sbjct: 59 HFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC 118
Query: 219 KRVGARFLLTSTSEVYGDPLQHPQKETYWG-NVNPIGV-RSCYDEGKRTAETLTMDYHRG 276
+ R + STSEVYG E + V P+ R Y K+ + + Y
Sbjct: 119 VKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEK 178
Query: 277 AGVEVRIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 330
G++ + R FN GPR+ I R ++ + + P+ + GKQ R F +
Sbjct: 179 EGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDI 238
Query: 331 SD 332
D
Sbjct: 239 RD 240
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 101/238 (42%), Gaps = 17/238 (7%)
Query: 109 PLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFEL 168
P R+ R+++ G GF+G+HL +RL+ + + + ++H P+F
Sbjct: 308 PACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH---PHFHF 364
Query: 169 IRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 222
+ D+ +E + + D + L A+P+ Y NP++ + + L ++ +
Sbjct: 365 VEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR 424
Query: 223 ARFLLTSTSEVYGDPLQHPQKETYWG-NVNPIGV-RSCYDEGKRTAETLTMDYHRGAGVE 280
R + STSEVYG E + V P+ R Y K+ + + Y G++
Sbjct: 425 KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQ 484
Query: 281 VRIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 332
+ R FN GPR+ I R ++ + + P+ + GKQ R F + D
Sbjct: 485 FTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRD 542
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 104/230 (45%), Gaps = 19/230 (8%)
Query: 120 VVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKEN------VMHHFGNPNFELIRHDV 173
++TG AGF+GS+L++ L+ V+ +DNF TG + N ++ NF+ I+ D+
Sbjct: 31 LITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDI 90
Query: 174 -----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLL 227
VD + H A S +P+ + TN+ G LNML A+ + F
Sbjct: 91 RNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTY 150
Query: 228 TSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
++S YGD P+ E G P+ S Y K E + R G R F
Sbjct: 151 AASSSTYGDHPGLPKVEDTIG--KPL---SPYAVTKYVNELYADVFSRCYGFSTIGLRYF 205
Query: 288 NTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVR 335
N +G R + V+ + + ++ + + + GDG+ +R F ++ + V+
Sbjct: 206 NVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQ 255
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 111/245 (45%), Gaps = 32/245 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGA-GVEVRIA 284
+S++ VYGD + P E++ P G +S Y + K E + D + + +
Sbjct: 121 FSSSATVYGDQPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 285 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 329
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 330 VSDLV 334
V DL
Sbjct: 236 VMDLA 240
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 111/245 (45%), Gaps = 32/245 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGA-GVEVRIA 284
+S++ VYGD + P E++ P G +S Y + K E + D + + +
Sbjct: 121 FSSSATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 285 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 329
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 330 VSDLV 334
V DL
Sbjct: 236 VMDLA 240
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 111/245 (45%), Gaps = 32/245 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGA-GVEVRIA 284
+S++ VYGD + P E++ P G +S Y + K E + D + + +
Sbjct: 121 FSSSATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 285 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 329
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 330 VSDLV 334
V DL
Sbjct: 236 VMDLA 240
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 110/245 (44%), Gaps = 32/245 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGA-GVEVRIA 284
+S + VYGD + P E++ P G +S Y + K E + D + + +
Sbjct: 121 FSSAATVYGDQPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 285 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 329
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 330 VSDLV 334
V DL
Sbjct: 236 VMDLA 240
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 102/242 (42%), Gaps = 17/242 (7%)
Query: 105 GGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNP 164
G P R+ R+++ G GF+G+HL +RL+ + + + ++H P
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH---P 58
Query: 165 NFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA 218
+F + D+ +E + + D + L A+P+ Y NP++ + + L ++
Sbjct: 59 HFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC 118
Query: 219 KRVGARFLLTSTSEVYGDPLQHPQKETYWG-NVNPIGV-RSCYDEGKRTAETLTMDYHRG 276
+ R + ST+EVYG E + V P+ R Y K+ + + Y
Sbjct: 119 VKYRKRIIFPSTAEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEK 178
Query: 277 AGVEVRIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 330
G++ + R FN GPR+ I R ++ + + P+ + GKQ R F +
Sbjct: 179 EGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDI 238
Query: 331 SD 332
D
Sbjct: 239 RD 240
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 110/245 (44%), Gaps = 32/245 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGA-GVEVRIA 284
+S + VYGD + P E++ P G +S Y + K E + D + + +
Sbjct: 121 FSSVATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 285 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 329
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 330 VSDLV 334
V DL
Sbjct: 236 VMDLA 240
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 110/245 (44%), Gaps = 32/245 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGA-GVEVRIA 284
+S + VYGD + P E++ P G +S Y + K E + D + + +
Sbjct: 121 FSSAATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 285 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 329
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 330 VSDLV 334
V DL
Sbjct: 236 VMDLA 240
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 99/230 (43%), Gaps = 17/230 (7%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV--- 173
+R+++ G GF+G+HL +RL+ + + + ++H P+F + D+
Sbjct: 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH---PHFHFVEGDISIH 57
Query: 174 ---VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 230
+E + + D + L A+P+ Y NP++ + + L ++ + R + ST
Sbjct: 58 SEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPST 117
Query: 231 SEVYGDPLQHPQKETYWG-NVNPIGV-RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
SEVYG E + V P+ R Y K+ + + Y G++ + R FN
Sbjct: 118 SEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFN 177
Query: 289 TYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 332
GPR+ I R ++ + + P+ + GKQ R F + D
Sbjct: 178 WMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRD 227
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 111/245 (45%), Gaps = 32/245 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGA-GVEVRIA 284
+S++ VYGD + P E++ P G +S + + K E + D + + +
Sbjct: 121 FSSSATVYGDQPKIPYVESF-----PTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 285 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 329
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 330 VSDLV 334
V DL
Sbjct: 236 VMDLA 240
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 104/258 (40%), Gaps = 26/258 (10%)
Query: 100 GAVNSGGKIPLGLKRKGL---RIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKE 155
G V G +P+ + L ++V GGAGFVGS+LV RL+ G + V VVDN + K
Sbjct: 13 GLVPRGSHMPVIMNASKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKI 72
Query: 156 NVMHHFGNPNFELIRHDVVEPLLL-----EVDQIYHLACPASPVHYKFNPVKTIKTNVVG 210
NV H P + + LL E D ++HLA +P+ + N +
Sbjct: 73 NVPDH---PAVRFSETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLT 129
Query: 211 TLNM---LGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAE 267
TL + L KR+ + + + V+ S Y K E
Sbjct: 130 TLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGE 189
Query: 268 TLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGR-----------VVSNFVAQALRKEPLT 316
++ YH+ + AR N YGP + GR V F+ +AL+ PL
Sbjct: 190 FYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLP 249
Query: 317 VYGDGKQTRSFQFVSDLV 334
+ G TR F FV D+
Sbjct: 250 LENGGVATRDFIFVEDVA 267
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 110/245 (44%), Gaps = 32/245 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGA-GVEVRIA 284
+S + VYGD + P E++ P G +S + + K E + D + + +
Sbjct: 121 FSSAATVYGDQPKIPYVESF-----PTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 285 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 329
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 330 VSDLV 334
V DL
Sbjct: 236 VMDLA 240
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 110/245 (44%), Gaps = 32/245 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKE--NVMHHFGNPNFELIRHDV- 173
+R++VTGG+G++GSH +L+ G VI++DN ++ V+ G + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 VEPLLLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 226
E L+ E +D + H A + P++ NV GTL ++ + + F+
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGA-GVEVRIA 284
+S + VYGD + P E++ P G +S + + K E + D + + +
Sbjct: 121 FSSAATVYGDNPKIPYVESF-----PTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 285 RIFNTYGPRMCIDDGR----VVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQF 329
R FN G D G + +N ++AQ R++ L ++G DG R +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 330 VSDLV 334
V DL
Sbjct: 236 VMDLA 240
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 107/234 (45%), Gaps = 24/234 (10%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL 178
I++ GGAG++GSH V +L+ G SV+VVDN TG ++ + N +L + +
Sbjct: 4 ILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVF 63
Query: 179 LE--VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYG 235
+ ++ + H A + P++ NV G L +L + +F+ +ST+ YG
Sbjct: 64 TQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYG 123
Query: 236 D-PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYG--P 292
+ + +ET NP + Y E K E + Y + + + +I R FN G P
Sbjct: 124 EVDVDLITEETM---TNPT---NTYGETKLAIEKMLHWYSQASNLRYKIFRYFNVAGATP 177
Query: 293 RMCI-DDGRVVSNFVAQAL-----RKEPLTVYGDGKQT------RSFQFVSDLV 334
I +D R ++ + L ++E + ++GD T R + V DLV
Sbjct: 178 NGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDLV 231
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 102/232 (43%), Gaps = 18/232 (7%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFE---LIRH 171
K ++++ G GF+G HL R++ D + + T R +++ H FE I
Sbjct: 23 KAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINK 82
Query: 172 DVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 231
+ VE + + D I L A+P Y P++ + + L ++ A + G + STS
Sbjct: 83 EWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTS 142
Query: 232 EVYG---DPLQHPQKETY-WGNVN-PIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
EVYG D P +G +N P + +C K+ + + Y G+ + R
Sbjct: 143 EVYGMCADEQFDPDASALTYGPINKPRWIYAC---SKQLMDRVIWGYGM-EGLNFTLFRP 198
Query: 287 FNTYGPRMCI------DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 332
FN GP + RVV+ F+ +R E +++ G Q R+F +V D
Sbjct: 199 FNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTYVDD 250
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 107/246 (43%), Gaps = 32/246 (13%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVM-------HHFGNPNFELIRH 171
++VTGGAG++GSH V LI G +V DN ++V HH +L
Sbjct: 14 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDR 73
Query: 172 DVVEPLLLE--VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLT 228
+E + E +D + H A + P++ N++GT+ +L L ++ ++F+ +
Sbjct: 74 KGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFS 133
Query: 229 STSEVYGDPLQHPQ-----KETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRI 283
S++ VYGD + P +E G NP Y K E + D + +
Sbjct: 134 SSATVYGDATRFPNMIPIPEECPLGPTNP------YGHTKYAIENILNDLYNSDKKSWKF 187
Query: 284 A--RIFNTYGPR---MCIDDGRVVSN----FVAQAL--RKEPLTVYGDGKQTRSFQFVSD 332
A R FN G + +D + N ++AQ R+E L ++GD +R + D
Sbjct: 188 AILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRD 247
Query: 333 LVRLTE 338
+ + +
Sbjct: 248 YIHVVD 253
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 105/239 (43%), Gaps = 36/239 (15%)
Query: 119 IVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNF-----FTGRKENVMHHFGNP---NFEL 168
I++TGGAGFVGS+L V+V+D F F+ + + + HF N E+
Sbjct: 13 ILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEV 72
Query: 169 IRHDVVEPL------LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 222
I D+ PL L D ++H A + N +KTN LN+L +A+
Sbjct: 73 IAADINNPLDLRRLEKLHFDYLFHQAAVSDTT--MLNQELVMKTNYQAFLNLLEIARSKK 130
Query: 223 ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV----RSCYDEGKRTAETLTMDYHRGAG 278
A+ + S++ VYG+ N +P V + C DE + H
Sbjct: 131 AKVIYASSAGVYGNT---KAPNVVGKNESPENVYGFSKLCMDEFVLS--------HSNDN 179
Query: 279 VEVRIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVR 335
V+V + R FN YGPR + +V A+ + + ++ G+Q R F ++ D+++
Sbjct: 180 VQVGL-RYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQ 237
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 93/196 (47%), Gaps = 25/196 (12%)
Query: 111 GLKRKG--LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFEL 168
GL +G +RI++TGGAG +GS+L++ + +G ++V+DNF TG++E + G +
Sbjct: 13 GLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAG---LSV 69
Query: 169 IRHDVVEPLLLEVDQIYHLACPASPVH----YKFNP---VKTIKTNVVGTLNMLGLAKRV 221
I V + LLE + + P VH YK +P + TNV G++N+ A +
Sbjct: 70 IEGSVTDAGLLE--RAFDSFKPTHVVHSAAAYK-DPDDWAEDAATNVQGSINVAKAASKA 126
Query: 222 GARFLLT-STSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVE 280
G + LL T+ YG P P +P + Y K E M + V
Sbjct: 127 GVKRLLNFQTALCYGRPATVPIPID-----SPTAPFTSYGISKTAGEAFLM----MSDVP 177
Query: 281 VRIARIFNTYGPRMCI 296
V R+ N GPR+ I
Sbjct: 178 VVSLRLANVTGPRLAI 193
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 109/242 (45%), Gaps = 36/242 (14%)
Query: 120 VVTGGAGFVGSHLVDRLIARGDSVIVV----DNFFTGRKENVMH--HFGNPNFELIRHDV 173
++TG G GS+L + L+ +G V + +F T R +++ H NP F L D+
Sbjct: 5 LITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDL 64
Query: 174 VEP-----LLLEV--DQIYHLACPASPVHYKF-NPVKTIKTNVVGTLNML------GLAK 219
+ +L EV D++Y+L S V F +P T + +GTL +L GL K
Sbjct: 65 SDTSNLTRILREVQPDEVYNLGA-MSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEK 123
Query: 220 RVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGV 279
+ RF STSE+YG + PQKET P RS Y K A +T++Y G+
Sbjct: 124 KT--RFYQASTSELYGLVQEIPQKET-----TPFYPRSPYAVAKLYAYWITVNYRESYGM 176
Query: 280 EVRIARIFNTYGPR-----MCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 334
+FN PR + R ++N +AQ L E G+ R + D V
Sbjct: 177 YACNGILFNHESPRRGETFVTRKITRAIAN-IAQGL--ESCLYLGNMDSLRDWGHAKDYV 233
Query: 335 RL 336
++
Sbjct: 234 KM 235
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 111/252 (44%), Gaps = 40/252 (15%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRK------ENV--MHHFGNPNFELI 169
+++VTGGAG++GSH V L+ G +V+DNF + E++ + + E
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 170 RHDVVEPLLLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 222
D+++ L+ + H A + P+ + N+ GT+ +L + K G
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMKAHG 123
Query: 223 ARFLL-TSTSEVYGDPLQHPQKETY--WGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGV 279
+ L+ +S++ VYG+P P E + G NP Y + K E + D +
Sbjct: 124 VKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNP------YGKSKFFIEEMIRDLCQADKT 177
Query: 280 -EVRIARIFNTYGPRM--CI-DDGRVVSN----FVAQAL--RKEPLTVYG------DGKQ 323
V + R FN G CI +D + + N +V+Q R+E L V+G DG
Sbjct: 178 WNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 324 TRSFQFVSDLVR 335
R + V DL +
Sbjct: 238 VRDYIHVVDLAK 249
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 111/252 (44%), Gaps = 40/252 (15%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRK------ENV--MHHFGNPNFELI 169
+++VTGGAG++GSH V L+ G +V+DNF + E++ + + E
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 170 RHDVVEPLLLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 222
D+++ L+ + H A + P+ + N+ GT+ +L + K G
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHG 123
Query: 223 ARFLL-TSTSEVYGDPLQHPQKETY--WGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGV 279
+ L+ +S++ VYG+P P E + G NP Y + K E + D +
Sbjct: 124 VKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNP------YGKSKFFIEEMIRDLCQADKT 177
Query: 280 -EVRIARIFNTYGPRM--CI-DDGRVVSN----FVAQAL--RKEPLTVYG------DGKQ 323
V + R FN G CI +D + + N +V+Q R+E L V+G DG
Sbjct: 178 WNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 324 TRSFQFVSDLVR 335
R + V DL +
Sbjct: 238 VRDYIHVVDLAK 249
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 110/252 (43%), Gaps = 40/252 (15%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRK------ENV--MHHFGNPNFELI 169
+++VTGGAG++GSH V L+ G +V+DNF + E++ + + E
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 170 RHDVVEPLLLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 222
D+++ L+ + H A + P+ + N+ GT+ +L + K G
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHG 123
Query: 223 ARFLL-TSTSEVYGDPLQHPQKETY--WGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGV 279
+ L+ +S++ VYG+P P E + G NP Y + K E + D +
Sbjct: 124 VKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNP------YGKSKFFIEEMIRDLCQADKT 177
Query: 280 -EVRIARIFNTYGPRM--CI-DDGRVVSN----FVAQAL--RKEPLTVYG------DGKQ 323
+ R FN G CI +D + + N +V+Q R+E L V+G DG
Sbjct: 178 WNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 324 TRSFQFVSDLVR 335
R + V DL +
Sbjct: 238 VRDYIHVVDLAK 249
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 103/248 (41%), Gaps = 41/248 (16%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENV--MHHFGNPNFELIRHDVVEP 176
I+VTGGAG++GSH L+A G V++ DN ++E + + DV +
Sbjct: 8 ILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDE 67
Query: 177 LLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLG------------LAKRVGAR 224
L +I+ + +H F +K + +V + + +R R
Sbjct: 68 RALA--RIFDAHPITAAIH--FAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKR 123
Query: 225 FLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIA 284
+ +S++ VYG P + P ET+ P+ + Y + K AE + D A R+A
Sbjct: 124 IVFSSSATVYGVPERSPIDETF-----PLSATNPYGQTKLMAEQILRDVE-AADPSWRVA 177
Query: 285 --RIFNTYGPR---MCIDDGRVVSN----FVAQAL--RKEPLTVYG------DGKQTRSF 327
R FN G + +D + N +VAQ + E L V+G DG R +
Sbjct: 178 TLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDY 237
Query: 328 QFVSDLVR 335
V DL R
Sbjct: 238 IHVVDLAR 245
>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
pdb|4B8W|B Chain B, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
Length = 319
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 97/233 (41%), Gaps = 23/233 (9%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV 174
+ +RI+VTGG+G VG + +++A G + D F K+ +L
Sbjct: 5 QSMRILVTGGSGLVGK-AIQKVVADGAGLPGEDWVFVSSKDA----------DLTDTAQT 53
Query: 175 EPLLLEVD--QIYHLACPASPV--HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 230
L +V + HLA + + K+N + + NV N+L A VGAR +++
Sbjct: 54 RALFEKVQPTHVIHLAAMVGGLFRNIKYN-LDFWRKNVHMNDNVLHSAFEVGARKVVSCL 112
Query: 231 SE-VYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNT 289
S ++ D +P ET N P Y KR + Y + G N
Sbjct: 113 STCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNV 172
Query: 290 YGP--RMCIDDGRVVSNFVAQA-LRK---EPLTVYGDGKQTRSFQFVSDLVRL 336
+GP I+DG V+ + + L K LTV+G G R F + DL +L
Sbjct: 173 FGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQL 225
>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|B Chain B, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|C Chain C, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|D Chain D, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
Length = 320
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 97/233 (41%), Gaps = 23/233 (9%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV 174
+ +RI+VTGG+G VG + +++A G + D F K+ +L
Sbjct: 6 QSMRILVTGGSGLVGK-AIQKVVADGAGLPGEDWVFVSSKDA----------DLTDTAQT 54
Query: 175 EPLLLEVD--QIYHLACPASPV--HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 230
L +V + HLA + + K+N + + NV N+L A VGAR +++
Sbjct: 55 RALFEKVQPTHVIHLAAMVGGLFRNIKYN-LDFWRKNVHMNDNVLHSAFEVGARKVVSCL 113
Query: 231 SE-VYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNT 289
S ++ D +P ET N P Y KR + Y + G N
Sbjct: 114 STCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNV 173
Query: 290 YGP--RMCIDDGRVVSNFVAQA-LRK---EPLTVYGDGKQTRSFQFVSDLVRL 336
+GP I+DG V+ + + L K LTV+G G R F + DL +L
Sbjct: 174 FGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQL 226
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 95/221 (42%), Gaps = 38/221 (17%)
Query: 120 VVTGGAGFVGSHLVDRLIARGDSVIVV----DNFFTGRKENVMHHFGNP------NFELI 169
++TG G GS+L + L+ +G V + +F TGR E H + NP N +L
Sbjct: 28 LITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIE---HLYKNPQAHIEGNMKLH 84
Query: 170 RHDVVEPLLL-----EVD--QIYHLACPASPVHYKFNPVK-TIKTNVVGTLNMLGLAKRV 221
D+ + L EV +IY+L S V F+ + T + VGTL +L K
Sbjct: 85 YGDLTDSTCLVKIINEVKPTEIYNLGAQ-SHVKISFDLAEYTADVDGVGTLRLLDAVKTC 143
Query: 222 G----ARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA 277
G +F STSE+YG + PQKET P RS Y K A + +++
Sbjct: 144 GLINSVKFYQASTSELYGKVQEIPQKET-----TPFYPRSPYGAAKLYAYWIVVNFREAY 198
Query: 278 GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVY 318
+ +FN PR +NFV + + + +Y
Sbjct: 199 NLFAVNGILFNHESPRRG-------ANFVTRKISRSVAKIY 232
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 23/167 (13%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARG--------DSVIVVDNFFTGRKENVMH-HFGN-P 164
+G R+ VTG GF GS L L G D+ V F R ++M H G+
Sbjct: 8 QGKRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPTVPSLFEIVRLNDLMESHIGDIR 67
Query: 165 NFELIRHDVVEPLLLEVDQIYHLAC-PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA 223
+FE +R + E + + ++H+A P + Y+ P+KT TNV+GT+++L K+VG
Sbjct: 68 DFEKLRSSIAE---FKPEIVFHMAAQPLVRLSYE-QPIKTYSTNVMGTVHLLETVKQVGN 123
Query: 224 -RFLLTSTSEVYGDPLQHPQKETYWG--NVNPIGVRSCYDEGKRTAE 267
+ ++ TS+ D +E WG P+G Y K AE
Sbjct: 124 IKAVVNITSDKCYD-----NREWVWGYRENEPMGGYDPYSNSKGCAE 165
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 87/209 (41%), Gaps = 38/209 (18%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGD-SVIVVDNFF-TGRKENVMHHFGNPNFELIRHDVV 174
+R++V GGAG++GSH V L+ + SV++VD+ T K + + N +L + D
Sbjct: 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGP 62
Query: 175 EP------LLLEV-------------------DQIYHLACPASPVHYKFNPVKTIKTNVV 209
+P LEV D + H+ + +P+K NVV
Sbjct: 63 KPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVV 122
Query: 210 GTLNML-GLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGV------RSCYDEG 262
G L +L + + + +S++ ++G+P + N PI + S Y E
Sbjct: 123 GILRLLQAMLLHKCDKIIFSSSAAIFGNPTM----GSVSTNAEPIDINAKKSPESPYGES 178
Query: 263 KRTAETLTMDYHRGAGVEVRIARIFNTYG 291
K AE + D G++ R FN G
Sbjct: 179 KLIAERMIRDCAEAYGIKGICLRYFNACG 207
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 25/197 (12%)
Query: 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD----NFFTGRKENVMHHFGNPN-FELIR 170
G R ++TG G G++L L+ +G V D F + R + G N ++I
Sbjct: 3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWR----LKELGIENDVKIIH 58
Query: 171 HDVVE-------PLLLEVDQIYHLACPASPVHYKF-NPVKTIKTNVVGTLNMLGLAKRV- 221
D++E ++ D++Y+LA S V F P+ T + + +G L +L + V
Sbjct: 59 MDLLEFSNIIRTIEKVQPDEVYNLAA-QSFVGVSFEQPILTAEVDAIGVLRILEALRTVK 117
Query: 222 -GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVE 280
+F STSE++G + PQ E P RS Y K +T++Y +
Sbjct: 118 PDTKFYQASTSEMFGKVQEIPQTEK-----TPFYPRSPYAVAKLFGHWITVNYREAYNMF 172
Query: 281 VRIARIFNTYGPRMCID 297
+FN P I+
Sbjct: 173 ACSGILFNHESPLRGIE 189
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 85/220 (38%), Gaps = 16/220 (7%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
L+I VTGG GF+G ++V+ + G++ I++ G K + + ++ L D++
Sbjct: 3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSI-GNKAINDYEYRVSDYTL--EDLINQ 59
Query: 177 LLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTSTSEVYG 235
L +VD + HLA + N + T N+ + + ST Y
Sbjct: 60 -LNDVDAVVHLAATRGSQ----GKISEFHDNEILTQNLYDACYENNISNIVYASTISAYS 114
Query: 236 DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMC 295
D P W Y K E + Y R G+ ++ R + YG
Sbjct: 115 DETSLP-----WNEKELPLPDLXYGVSKLACEHIGNIYSRKKGLCIKNLRFAHLYGFNE- 168
Query: 296 IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVR 335
+ ++ F QA E LT++ + R F + D +
Sbjct: 169 -KNNYXINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAK 207
>pdb|2ZKL|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
Length = 369
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 81/221 (36%), Gaps = 47/221 (21%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRH---DV 173
+ IV+TG GFVG +L L + D HH FE+ R +
Sbjct: 1 MNIVITGAKGFVGKNLKADLTSTTD-----------------HHI----FEVHRQTKEEE 39
Query: 174 VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEV 233
+E LL+ D I HLA P H K + + + + L++L + A L +S
Sbjct: 40 LESALLKADFIVHLAGVNRPEHDKEFSLGNV-SYLDHVLDILTRNTKKPAILLSSSIQAT 98
Query: 234 YGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPR 293
+P Y E K E L +Y G V I R N +G
Sbjct: 99 QDNP---------------------YGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKW 137
Query: 294 MCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 334
+ V++ F + R E + V D + +V D+V
Sbjct: 138 CKPNYNSVIATFCYKIARNEEIQV-NDRNVELTLNYVDDIV 177
>pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein
Sqd1, With Nad And Udp-Glucose
Length = 404
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 102/285 (35%), Gaps = 71/285 (24%)
Query: 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG------------- 162
G R++V GG G+ G L + V +VDN + H G
Sbjct: 11 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLV---RRLFDHQLGLESLTPIASIHDR 67
Query: 163 --------NPNFELIRHDVVEPLLL-------EVDQIYHL----ACPASPVHYKFNPVKT 203
+ EL D+ + L E D + H + P S + + V T
Sbjct: 68 ISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMID-RSRAVYT 126
Query: 204 IKTNVVGTLNMLGLAKRVGARFLLTS--TSEVYGDP-------------------LQHPQ 242
NV+GTLN+L K G L T YG P L +P+
Sbjct: 127 QHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPK 186
Query: 243 KETYWGNVNPIG-----VRSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRMC 295
+ + + +++ + +C G R D ++G GV+ + R+
Sbjct: 187 QASSFYHLSKVHDSHNIAFTCKAWGIRAT-----DLNQGVVYGVKTDETEMHEELRNRLD 241
Query: 296 IDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVRLTE 338
D G ++ F QA PLTVYG G QTR + + D V+ E
Sbjct: 242 YDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVE 286
>pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-SulfoquinovoseUDP-Glucose
pdb|1I2C|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-Glucose
Length = 404
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 102/285 (35%), Gaps = 71/285 (24%)
Query: 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG------------- 162
G R++V GG G+ G L + V +VDN + H G
Sbjct: 11 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLV---RRLFDHQLGLESLTPIASIHDR 67
Query: 163 --------NPNFELIRHDVVEPLLL-------EVDQIYHL----ACPASPVHYKFNPVKT 203
+ EL D+ + L E D + H + P S + + V T
Sbjct: 68 ISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMID-RSRAVYT 126
Query: 204 IKTNVVGTLNMLGLAKRVGARFLLTSTSEV--YGDP-------------------LQHPQ 242
NV+GTLN+L K G L + YG P L +P+
Sbjct: 127 QHNNVIGTLNVLFAIKEFGEECHLVKLGAMGEYGTPNIDIEEGYITITHNGRTDTLPYPK 186
Query: 243 KETYWGNVNPIG-----VRSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRMC 295
+ + + +++ + +C G R D ++G GV+ + R+
Sbjct: 187 QASSFYHLSKVHDSHNIAFTCKAWGIRAT-----DLNQGVVYGVKTDETEMHEELRNRLD 241
Query: 296 IDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVRLTE 338
D G ++ F QA PLTVYG G QTR + + D V+ E
Sbjct: 242 YDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVE 286
>pdb|3ST7|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
pdb|3VHR|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus In Space Group
C2221
Length = 369
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 80/220 (36%), Gaps = 47/220 (21%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRH---DVV 174
IV+TG GFVG +L L + D HH FE+ R + +
Sbjct: 2 NIVITGAKGFVGKNLKADLTSTTD-----------------HHI----FEVHRQTKEEEL 40
Query: 175 EPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 234
E LL+ D I HLA P H K + + + + L++L + A L +S
Sbjct: 41 ESALLKADFIVHLAGVNRPEHDKEFSLGNV-SYLDHVLDILTRNTKKPAILLSSSIQATQ 99
Query: 235 GDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRM 294
+P Y E K E L +Y G V I R N +G
Sbjct: 100 DNP---------------------YGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWC 138
Query: 295 CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 334
+ V++ F + R E + V D + +V D+V
Sbjct: 139 KPNYNSVIATFCYKIARNEEIQV-NDRNVELTLNYVDDIV 177
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 119 IVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRK------ENVMHHFGNPNFELIRH 171
I+VTGGAGF+GS++V L +G ++VVDN G K N+ + +F LI+
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDF-LIQI 60
Query: 172 DVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 231
E +V+ I+H +S + + + N + +L FL S++
Sbjct: 61 MAGEE-FGDVEAIFHEGAXSSTTEW--DGKYMMDNNYQYSKELLHYCLEREIPFLYASSA 117
Query: 232 EVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
YG D ++ + E P+ V Y K + A ++ R F
Sbjct: 118 ATYGGRTSDFIESREYEK------PLNV---YGYSKFLFDEYVRQILPEANSQIVGFRYF 168
Query: 288 NTYGPR 293
N YGPR
Sbjct: 169 NVYGPR 174
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 20/184 (10%)
Query: 119 IVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRK------ENVMHHFGNPNFELIRH 171
I+VTGGAGF+GS++V L +G ++VVDN G K N+ + +F LI+
Sbjct: 49 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDF-LIQI 107
Query: 172 DVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 231
E +V+ I+H +S + + + N + +L FL S++
Sbjct: 108 MAGEE-FGDVEAIFHEGACSSTTEW--DGKYMMDNNYQYSKELLHYCLEREIPFLYASSA 164
Query: 232 EVYGDPLQH-PQKETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNT 289
YG + Y +N G + +DE R + L A ++ R FN
Sbjct: 165 ATYGGRTSDFIESREYEKPLNVFGYSKFLFDEYVR--QILPE-----ANSQIVGFRYFNV 217
Query: 290 YGPR 293
YGPR
Sbjct: 218 YGPR 221
>pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And
Udp- Glucose
Length = 394
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 101/283 (35%), Gaps = 71/283 (25%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFG--------------- 162
R++V GG G+ G L + V +VDN + H G
Sbjct: 3 RVMVIGGDGYCGWATALHLSKKNYEVCIVDNLV---RRLFDHQLGLESLTPIASIHDRIS 59
Query: 163 ------NPNFELIRHDVVEPLLL-------EVDQIYHL----ACPASPVHYKFNPVKTIK 205
+ EL D+ + L E D + H + P S + + V T
Sbjct: 60 RWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMID-RSRAVYTQH 118
Query: 206 TNVVGTLNMLGLAKRVGARFLLTS--TSEVYGDP-------------------LQHPQKE 244
NV+GTLN+L K G L T YG P L +P++
Sbjct: 119 NNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQA 178
Query: 245 TYWGNVNPIG-----VRSCYDEGKRTAETLTMDYHRGA--GVEVRIARIFNTYGPRMCID 297
+ + +++ + +C G R D ++G GV+ + R+ D
Sbjct: 179 SSFYHLSKVHDSHNIAFTCKAWGIRAT-----DLNQGVVYGVKTDETEMHEELRNRLDYD 233
Query: 298 D--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVRLTE 338
G ++ F QA PLTVYG G QTR + + D V+ E
Sbjct: 234 AVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVE 276
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 75/188 (39%), Gaps = 32/188 (17%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENV------------MHHFGNPN 165
R+ VTGG GF+GS ++ L+ G SV RK +V +H F N
Sbjct: 3 RVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFF---N 59
Query: 166 FELIRHDVVEPLLLEVDQIYHLACPASPVHYKFNPVKTI--KTNVVGTLNMLGLA--KRV 221
+L D + I+H ASP+ + + + I K V G L +L +
Sbjct: 60 ADLSNPDSFAAAIEGCVGIFH---TASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKT 116
Query: 222 GARFLLTSTSEV--YGDPLQHPQKETYWGNVN------PIGVRSCYDEGKRTAETLTMDY 273
RF+ TS+ + + E+ W +V+ P G Y K AE +++
Sbjct: 117 VKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWN--YAVSKTLAEKAVLEF 174
Query: 274 HRGAGVEV 281
G++V
Sbjct: 175 GEQNGIDV 182
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 18/134 (13%)
Query: 109 PLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSV--IVVDNFFTGRKENVMHHFGNPNF 166
P+G K V GG GFV S LV L+ +G +V V D + +++ +
Sbjct: 6 PIGKKTA----CVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDL 61
Query: 167 ELIRHDVVEPLLLE-----VDQIYHLACPASPVHYKFNPVKT--IKTNVVGTLNMLGLAK 219
++ R D+ + L E D ++H+ A+PVH+ + IK + G +N++
Sbjct: 62 KIFRADLTDELSFEAPIAGCDFVFHV---ATPVHFASEDPENDMIKPAIQGVVNVMKACT 118
Query: 220 RVGA--RFLLTSTS 231
R + R +LTS++
Sbjct: 119 RAKSVKRVILTSSA 132
>pdb|1BDB|A Chain A, Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase From
Pseudomonas Sp. Lb400
Length = 277
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
+K KG +++TGGA +G LVDR +A G V V+D
Sbjct: 1 MKLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLD 36
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 19/174 (10%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL 178
I+VTG +G +G+ LV L + V+ + R + ++ D ++ +
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIKFI---TLDVSNRDEIDRAV 58
Query: 179 --LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK--RVGARFLLTSTSEVY 234
+D I+HLA S K +P K N+ GT N+L AK RV + ++ ST V+
Sbjct: 59 EKYSIDAIFHLAGILSAKGEK-DPALAYKVNMNGTYNILEAAKQHRV-EKVVIPSTIGVF 116
Query: 235 GDPLQHPQKETYWGNVNPIGV---RSCYDEGKRTAETLTMDYHRGAGVEVRIAR 285
G ET V I + R+ Y K AE L Y+ G++VR R
Sbjct: 117 G-------PETPKNKVPSITITRPRTMYGVTKIAAELLGQYYYEKFGLDVRSLR 163
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 72/177 (40%), Gaps = 31/177 (17%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSV--------IVVDNFFTGRKENVMH-HFG--- 162
+G R+ VTG GF G L L G +V V F T R + M G
Sbjct: 8 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIR 67
Query: 163 --NPNFELIRHDVVEPLLLEVDQIYHLAC-PASPVHYKFNPVKTIKTNVVGTLNMLGLAK 219
N E IR + + ++H+A P + Y PV+T TNV+GT+ +L +
Sbjct: 68 DQNKLLESIRE-------FQPEIVFHMAAQPLVRLSYS-EPVETYSTNVMGTVYLLEAIR 119
Query: 220 RVGA-RFLLTSTSEVYGDPLQHPQKETYWG--NVNPIGVRSCYDEGKRTAETLTMDY 273
VG + ++ TS+ D KE WG +G Y K AE +T Y
Sbjct: 120 HVGGVKAVVNITSDKCYD-----NKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSY 171
>pdb|2Y93|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain
B-356.
pdb|2Y93|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain
B-356.
pdb|2Y99|A Chain A, Crystal Structure Of
Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase
(Bphb)from Pandoraea Pnomenusa Strain B-356 Complex With
Co-Enzyme Nad
pdb|2Y99|B Chain B, Crystal Structure Of
Cis-Biphenyl-2,3-Dihydrodiol-2,3-Dehydrogenase
(Bphb)from Pandoraea Pnomenusa Strain B-356 Complex With
Co-Enzyme Nad
pdb|3ZV3|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain B-
356 In Intermediate State Of Substrate Binding Loop
pdb|3ZV3|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb)from Pandoraea Pnomenusa Strain B-
356 In Intermediate State Of Substrate Binding Loop
pdb|3ZV4|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 In Apo Form At 1.8 Angstrom
pdb|3ZV4|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 In Apo Form At 1.8 Angstrom
pdb|3ZV5|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 Complex With Co-Enzyme Nad And Product 2,3-
Dihydroxybiphenyl
pdb|3ZV5|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 Complex With Co-Enzyme Nad And Product 2,3-
Dihydroxybiphenyl
pdb|3ZV6|A Chain A, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 Complex With Co-Enzyme Nad And Product Analog 4,4'-
Dihydroxybiphenyl
pdb|3ZV6|B Chain B, Crystal Structure Of Cis-Biphenyl-2,3-Dihydrodiol-2,3-
Dehydrogenase (Bphb) From Pandoraea Pnomenusa Strain B-
356 Complex With Co-Enzyme Nad And Product Analog 4,4'-
Dihydroxybiphenyl
Length = 281
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 112 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGN 163
+K G ++TGGA +G LVDR +A G V V+D +E + H GN
Sbjct: 1 MKLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGN 52
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 23/176 (13%)
Query: 119 IVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNFF---TGRKENVMHHFGNPNFELIRHDVV 174
I+VTG +G +G+ LV L + G ++ + TG + + N + E+ R V
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIKFITLDVSNRD-EIDR--AV 58
Query: 175 EPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK--RVGARFLLTSTSE 232
E +D I+HLA S K +P K N+ GT N+L AK RV + ++ ST
Sbjct: 59 EKY--SIDAIFHLAGILSAKGEK-DPALAYKVNMNGTYNILEAAKQHRV-EKVVIPSTIG 114
Query: 233 VYGDPLQHPQKETYWGNVNPIGV---RSCYDEGKRTAETLTMDYHRGAGVEVRIAR 285
V+G ET V I + R+ + K AE L Y+ G++VR R
Sbjct: 115 VFG-------PETPKNKVPSITITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLR 163
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 8/128 (6%)
Query: 119 IVVTGGAGFVGSHLVDRLI--ARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV--V 174
I++TGG G G V +++ +IV + E M F +P DV +
Sbjct: 24 ILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAME-FNDPRMRFFIGDVRDL 82
Query: 175 EPL---LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 231
E L L VD H A ++NP++ IKTN++G N++ + ++ ++
Sbjct: 83 ERLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALST 142
Query: 232 EVYGDPLQ 239
+ +P+
Sbjct: 143 DKAANPIN 150
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 19/127 (14%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFE----LIRHDVV 174
+ VTG +GF+GS LV RL+ RG +V T K+ V H P E L + D+
Sbjct: 8 VCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKK-VKHLLDLPKAETHLTLWKADLA 66
Query: 175 EPLLLE-----VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-----R 224
+ + ++H+A P K + IK + G MLG+ K A R
Sbjct: 67 DEGSFDEAIKGCTGVFHVATPMD-FESKDPENEVIKPTIEG---MLGIMKSCAAAKTVRR 122
Query: 225 FLLTSTS 231
+ TS++
Sbjct: 123 LVFTSSA 129
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 78/200 (39%), Gaps = 38/200 (19%)
Query: 120 VVTGGAGFVGSHLVDRLIARGDSVIVV----DNFFTGRKENVMHHFGNPNFELIRH---- 171
++TG G GS+L + L+ +G V + NF T R ++ N N L++
Sbjct: 32 LITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYAD 91
Query: 172 -----------DVVEPLLLEVDQIYHLACPASPVHYKFN-PVKTIKTNVVGTLNMLGLAK 219
DV++P D++Y+LA S V F P T G L +L +
Sbjct: 92 LTDASSLRRWIDVIKP-----DEVYNLAA-QSHVAVSFEIPDYTADVVATGALRLLEAVR 145
Query: 220 R------VGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDY 273
++ +SE++G PQ ET P RS Y K A T++Y
Sbjct: 146 SHTIDSGRTVKYYQAGSSEMFGS-TPPPQSET-----TPFHPRSPYAASKCAAHWYTVNY 199
Query: 274 HRGAGVEVRIARIFNTYGPR 293
G+ +FN PR
Sbjct: 200 REAYGLFACNGILFNHESPR 219
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
R++VTG AG VGS + L V + D G E H +L V L
Sbjct: 4 RLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEA---HEEIVACDLADAQAVHDL 60
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYG 235
+ + D I HL V +N + ++ N++G N+ A+ +G R + S++ G
Sbjct: 61 VKDCDGIIHLG--GVSVERPWNDI--LQANIIGAYNLYEAARNLGKPRIVFASSNHTIG 115
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 84/233 (36%), Gaps = 35/233 (15%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVD-----NFFTGRKENVMHHFGNPNFELIRHD 172
R+ + G G VGS + +L RGD +V+ N R +H F F R
Sbjct: 5 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSR---AVHDF----FASER-- 55
Query: 173 VVEPLLLEVDQIYHLACPASP-VHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 230
+DQ+Y A V P I N++ N++ A + + L +
Sbjct: 56 --------IDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGS 107
Query: 231 SEVYGDPLQHP--QKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
S +Y + P + E G + P Y K L Y+R G + R N
Sbjct: 108 SCIYPKLAKQPMAESELLQGTLEP--TNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTN 165
Query: 289 TYGPRMCI--DDGRVVSNFV-----AQALRKEPLTVYGDGKQTRSFQFVSDLV 334
YGP + V+ + A A + + V+G G R F V D+
Sbjct: 166 LYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMA 218
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 25/142 (17%)
Query: 106 GKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLI---------ARGDSVIV-----VDNFFT 151
KI + +G ++VTG GFV SH+V++L+ AR S + D +
Sbjct: 1 AKIDNAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYP 60
Query: 152 GRKENVMHHFGNPNFELIRHDVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGT 211
GR E + ++++ + ++ + H+A S K++ V + + GT
Sbjct: 61 GRFETAVVE------DMLKQGAYDEVIKGAAGVAHIASVVS-FSNKYDEV--VTPAIGGT 111
Query: 212 LNMLGLAKRVGA--RFLLTSTS 231
LN L A + RF+LTS++
Sbjct: 112 LNALRAAAATPSVKRFVLTSST 133
>pdb|1U7T|A Chain A, Crystal Structure Of AbadHSD10 WITH A BOUND INHIBITOR
pdb|1U7T|B Chain B, Crystal Structure Of AbadHSD10 WITH A BOUND INHIBITOR
pdb|1U7T|C Chain C, Crystal Structure Of AbadHSD10 WITH A BOUND INHIBITOR
pdb|1U7T|D Chain D, Crystal Structure Of AbadHSD10 WITH A BOUND INHIBITOR
Length = 261
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
KGL V+TGGA +G +RL+ +G S +++D
Sbjct: 9 KGLVAVITGGASGLGLATAERLVGQGASAVLLD 41
>pdb|1SO8|A Chain A, Abeta-bound Human Abad Structure [also Known As
3-hydroxyacyl-coa Dehydrogenase Type Ii (type Ii Hadh),
Endoplasmic Reticulum- Associated Amyloid Beta-peptide
Binding Protein (erab)]
Length = 261
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
KGL V+TGGA +G +RL+ +G S +++D
Sbjct: 9 KGLVAVITGGASGLGLATAERLVGQGASAVLLD 41
>pdb|2O23|A Chain A, The Structure Of Wild-Type Human Hadh2
(17beta-Hydroxysteroid Dehydrogenase Type 10) Bound To
Nad+ At 1.2 A
pdb|2O23|B Chain B, The Structure Of Wild-Type Human Hadh2
(17beta-Hydroxysteroid Dehydrogenase Type 10) Bound To
Nad+ At 1.2 A
Length = 265
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
KGL V+TGGA +G +RL+ +G S +++D
Sbjct: 11 KGLVAVITGGASGLGLATAERLVGQGASAVLLD 43
>pdb|3HDQ|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDY|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HE3|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3MJ4|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
Length = 397
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 113 KRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
+ KG ++ G AGF GS L +RL + G V++VD
Sbjct: 26 ESKGFDYLIVG-AGFAGSVLAERLASSGQRVLIVD 59
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 83/233 (35%), Gaps = 35/233 (15%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVD-----NFFTGRKENVMHHFGNPNFELIRHD 172
R+ + G G VGS + +L RGD +V+ N R +H F F R
Sbjct: 5 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSR---AVHDF----FASER-- 55
Query: 173 VVEPLLLEVDQIYHLACPASP-VHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 230
+DQ+Y A V P I N++ N++ A + + L +
Sbjct: 56 --------IDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGS 107
Query: 231 SEVYGDPLQHP--QKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
S +Y + P + E G + P Y K L Y+R G + R N
Sbjct: 108 SCIYPKLAKQPMAESELLQGTLEP--TNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTN 165
Query: 289 TYGPRMCI--DDGRVVSNFV-----AQALRKEPLTVYGDGKQTRSFQFVSDLV 334
YGP + V+ + A A + V+G G R F V D+
Sbjct: 166 LYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMA 218
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 22/175 (12%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV---- 173
R++VTG AG +G + +RL + + + D + + G PN E ++ D+
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMAEILRLAD-------LSPLDPAG-PNEECVQCDLADAN 56
Query: 174 -VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTS 231
V ++ D I HL V F + ++ N++G N+ A+ G R + S++
Sbjct: 57 AVNAMVAGCDGIVHLG--GISVEKPFE--QILQGNIIGLYNLYEAARAHGQPRIVFASSN 112
Query: 232 EVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
G +PQ E +V P Y K E L Y G E + RI
Sbjct: 113 HTIG---YYPQTERLGPDV-PARPDGLYGVSKCFGENLARMYFDKFGQETALVRI 163
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 83/233 (35%), Gaps = 35/233 (15%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVD-----NFFTGRKENVMHHFGNPNFELIRHD 172
R+ + G G VGS + +L RGD +V+ N R +H F F R
Sbjct: 5 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSR---AVHDF----FASER-- 55
Query: 173 VVEPLLLEVDQIYHLACPASP-VHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 230
+DQ+Y A V P I N++ N++ A + + L +
Sbjct: 56 --------IDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGS 107
Query: 231 SEVYGDPLQHP--QKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
S +Y + P + E G + P Y K L Y+R G + R N
Sbjct: 108 SCIYPKLAKQPMAESELLQGTLEP--TNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTN 165
Query: 289 TYGPRMCI--DDGRVVSNFV-----AQALRKEPLTVYGDGKQTRSFQFVSDLV 334
YGP + V+ + A A + V+G G R F V D+
Sbjct: 166 LYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMA 218
>pdb|4B4O|A Chain A, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|B Chain B, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|C Chain C, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|D Chain D, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|E Chain E, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|F Chain F, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|G Chain G, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|H Chain H, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
Length = 298
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
R++V GG GF+G+ L L ARG V +V
Sbjct: 2 RVLVGGGTGFIGTALTQLLNARGHEVTLVS 31
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 106 GKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARG 140
KI + +G ++VTG GFV SH+V++L+ G
Sbjct: 1 AKIDNAVLPEGSLVLVTGANGFVASHVVEQLLEHG 35
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 82/233 (35%), Gaps = 35/233 (15%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVD-----NFFTGRKENVMHHFGNPNFELIRHD 172
R+ + G G VGS + +L RGD +V+ N R +H F F R
Sbjct: 5 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSR---AVHDF----FASER-- 55
Query: 173 VVEPLLLEVDQIYHLACPASP-VHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 230
+DQ+Y A V P I N++ N++ A + + L
Sbjct: 56 --------IDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGA 107
Query: 231 SEVYGDPLQHP--QKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
S +Y + P + E G + P Y K L Y+R G + R N
Sbjct: 108 SCIYPKLAKQPMAESELLQGTLEP--TNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTN 165
Query: 289 TYGPRMCI--DDGRVVSNFV-----AQALRKEPLTVYGDGKQTRSFQFVSDLV 334
YGP + V+ + A A + V+G G R F V D+
Sbjct: 166 LYGPHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMA 218
>pdb|2OT4|A Chain A, Structure Of A Hexameric Multiheme C Nitrite Reductase
From The Extremophile Bacterium Thiolkalivibrio
Nitratireducens
pdb|2OT4|B Chain B, Structure Of A Hexameric Multiheme C Nitrite Reductase
From The Extremophile Bacterium Thiolkalivibrio
Nitratireducens
Length = 525
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 238 LQHPQKETYWGNVNPIGVRSCYD 260
LQHP+ ET+WG+V+ +C D
Sbjct: 359 LQHPEAETFWGSVHERNGVACAD 381
>pdb|3UU9|A Chain A, Structure Of The Free Tvnirb Form Of Thioalkalivibrio
Nitratireducens Cytochrome C Nitrite Reductase
pdb|3UU9|B Chain B, Structure Of The Free Tvnirb Form Of Thioalkalivibrio
Nitratireducens Cytochrome C Nitrite Reductase
Length = 520
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 238 LQHPQKETYWGNVNPIGVRSCYD 260
LQHP+ ET+WG+V+ +C D
Sbjct: 355 LQHPEAETFWGSVHERNGVACAD 377
>pdb|3SCE|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase With A Covalent Bond
Between The Ce1 Atom Of Tyr303 And The Cg Atom Of Gln360
(Tvnirb)
pdb|3SCE|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase With A Covalent Bond
Between The Ce1 Atom Of Tyr303 And The Cg Atom Of Gln360
(Tvnirb)
pdb|3S7W|A Chain A, Structure Of The Tvnirb Form Of Thioalkalivibrio
Nitratireducens Cytochrome C Nitrite Reductase With An
Oxidized Gln360 In A Complex With Hydroxylamine
pdb|3S7W|B Chain B, Structure Of The Tvnirb Form Of Thioalkalivibrio
Nitratireducens Cytochrome C Nitrite Reductase With An
Oxidized Gln360 In A Complex With Hydroxylamine
pdb|3OWM|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With
Hydroxylamine
pdb|3OWM|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With
Hydroxylamine
Length = 519
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 238 LQHPQKETYWGNVNPIGVRSCYD 260
LQHP+ ET+WG+V+ +C D
Sbjct: 355 LQHPEAETFWGSVHERNGVACAD 377
>pdb|3F29|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Sulfite
pdb|3F29|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Sulfite
pdb|2ZO5|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Azide
pdb|2ZO5|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Azide
pdb|3D1I|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Nitrite
pdb|3D1I|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Nitrite
pdb|3GM6|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Phosphate
pdb|3GM6|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Phosphate
pdb|3FO3|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase Reduced By Sodium
Dithionite (Sulfite Complex)
pdb|3FO3|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase Reduced By Sodium
Dithionite (Sulfite Complex)
pdb|3MMO|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Cyanide
pdb|3MMO|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Cyanide
pdb|3LG1|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase Reduced By Sodium
Borohydride (In Complex With Sulfite)
pdb|3LG1|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase Reduced By Sodium
Borohydride (In Complex With Sulfite)
pdb|3LGQ|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Sulfite
(Modified Tyr-303)
pdb|3LGQ|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In Complex With Sulfite
(Modified Tyr-303)
Length = 525
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 238 LQHPQKETYWGNVNPIGVRSCYD 260
LQHP+ ET+WG+V+ +C D
Sbjct: 359 LQHPEAETFWGSVHERNGVACAD 381
>pdb|3RKH|A Chain A, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Nitrite
(Full Occupancy)
pdb|3RKH|B Chain B, Structure Of The Thioalkalivibrio Nitratireducens
Cytochrome C Nitrite Reductase In A Complex With Nitrite
(Full Occupancy)
Length = 520
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 238 LQHPQKETYWGNVNPIGVRSCYD 260
LQHP+ ET+WG+V+ +C D
Sbjct: 355 LQHPEAETFWGSVHERNGVACAD 377
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 83/233 (35%), Gaps = 35/233 (15%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVD-----NFFTGRKENVMHHFGNPNFELIRHD 172
R+ + G G VGS + +L RGD +V+ N R +H F F R
Sbjct: 5 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSR---AVHDF----FASER-- 55
Query: 173 VVEPLLLEVDQIYHLACPASP-VHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 230
+DQ+Y A V P I N++ N++ A + + L +
Sbjct: 56 --------IDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGS 107
Query: 231 SEVYGDPLQHP--QKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
S +Y + P + E G + P Y + L Y+R G + R N
Sbjct: 108 SCIYPKLAKQPMAESELLQGTLEP--TNEPYAIARIAGIKLCESYNRQYGRDYRSVMPTN 165
Query: 289 TYGPRMCI--DDGRVVSNFV-----AQALRKEPLTVYGDGKQTRSFQFVSDLV 334
YGP + V+ + A A + V+G G R F V D+
Sbjct: 166 LYGPHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMA 218
>pdb|3RFX|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
Length = 267
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 32/180 (17%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV---- 173
R++VTG AG +G + +RL + + + D + + G PN E ++ D+
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMAEILRLAD-------LSPLDPAG-PNEECVQCDLADAN 56
Query: 174 -VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTS 231
V ++ D I HL V F + ++ N++G N+ A+ G R + S++
Sbjct: 57 AVNAMVAGCDGIVHLG--GISVEKPFE--QILQGNIIGLYNLYEAARAHGQPRIVFASSN 112
Query: 232 EVYGDPLQHPQKETYWGNVNP-----IGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
G +PQ E +V GV C+ E L Y G E + RI
Sbjct: 113 HTIG---YYPQTERLGPDVPARPDGLAGVSKCF------GENLARMYFDKFGQETALVRI 163
>pdb|1E3W|A Chain A, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And 3-Keto Butyrate
Length = 261
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
KGL V+TGGA +G RL+ +G + +++D
Sbjct: 9 KGLVAVITGGASGLGLSTAKRLVGQGATAVLLD 41
>pdb|1E3S|A Chain A, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh
pdb|1E3S|B Chain B, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh
pdb|1E3S|C Chain C, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh
pdb|1E3S|D Chain D, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh
pdb|1E3W|B Chain B, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And 3-Keto Butyrate
pdb|1E3W|C Chain C, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And 3-Keto Butyrate
pdb|1E3W|D Chain D, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And 3-Keto Butyrate
Length = 261
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
KGL V+TGGA +G RL+ +G + +++D
Sbjct: 9 KGLVAVITGGASGLGLSTAKRLVGQGATAVLLD 41
>pdb|1E6W|A Chain A, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And Estradiol
pdb|1E6W|B Chain B, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And Estradiol
pdb|1E6W|C Chain C, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And Estradiol
pdb|1E6W|D Chain D, Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex
With Nadh And Estradiol
Length = 260
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
KGL V+TGGA +G RL+ +G + +++D
Sbjct: 8 KGLVAVITGGASGLGLSTAKRLVGQGATAVLLD 40
>pdb|3TTB|A Chain A, Structure Of The Thioalkalivibrio Paradoxus Cytochrome C
Nitrite Reductase In Complex With Sulfite
pdb|3TTB|B Chain B, Structure Of The Thioalkalivibrio Paradoxus Cytochrome C
Nitrite Reductase In Complex With Sulfite
pdb|3SXQ|A Chain A, Structure Of A Hexameric Multiheme C Nitrite Reductase
From The Extremophile Bacterium Thiolkalivibrio
Paradoxus
pdb|3SXQ|B Chain B, Structure Of A Hexameric Multiheme C Nitrite Reductase
From The Extremophile Bacterium Thiolkalivibrio
Paradoxus
Length = 525
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 14/88 (15%)
Query: 187 LACPASPVHYKFNP-----------VKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 235
L C V Y NP + +TN N+ A+ T G
Sbjct: 294 LMCGQCHVEYNCNPGFQQSDGAPVGMDDRRTNHFFWANVFDYAEAAKEIDFFDFTHVTTG 353
Query: 236 DPL---QHPQKETYWGNVNPIGVRSCYD 260
PL QHP+ ET+WG+ + +C D
Sbjct: 354 APLPKLQHPELETFWGSTHERNGVTCAD 381
>pdb|3GSI|A Chain A, Crystal Structure Of D552a Dimethylglycine Oxidase Mutant
Of Arthrobacter Globiformis In Complex With
Tetrahydrofolate
Length = 827
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARG-DSVIVVDN 148
RIV+ G AG VG++L D L+ RG +++ V+D
Sbjct: 3 RIVIIG-AGIVGTNLADELVTRGWNNITVLDQ 33
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 82/233 (35%), Gaps = 35/233 (15%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVD-----NFFTGRKENVMHHFGNPNFELIRHD 172
R+ + G G VGS + +L RGD +V+ N R +H F F R
Sbjct: 5 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSR---AVHDF----FASER-- 55
Query: 173 VVEPLLLEVDQIYHLACPASP-VHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 230
+DQ+Y A V P I N++ N++ A + + L +
Sbjct: 56 --------IDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGS 107
Query: 231 SEVYGDPLQHP--QKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
S +Y + P + E G + P K L Y+R G + R N
Sbjct: 108 SCIYPKLAKQPMAESELLQGTLEPTNEPEAI--AKIAGIKLCESYNRQYGRDYRSVMPTN 165
Query: 289 TYGPRMCI--DDGRVVSNFV-----AQALRKEPLTVYGDGKQTRSFQFVSDLV 334
YGP + V+ + A A + V+G G R F V D+
Sbjct: 166 LYGPHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMA 218
>pdb|1PJ5|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
Arthrobacter Globiformis In Complex With Acetate
pdb|1PJ6|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
Arthrobacter Globiformis In Complex With Folic Acid
pdb|1PJ7|A Chain A, Structure Of Dimethylglycine Oxidase Of Arthrobacter
Globiformis In Complex With Folinic Acid
Length = 830
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARG-DSVIVVDN 148
RIV+ G AG VG++L D L+ RG +++ V+D
Sbjct: 6 RIVIIG-AGIVGTNLADELVTRGWNNITVLDQ 36
>pdb|3GED|A Chain A, Fingerprint And Structural Analysis Of A Apo Scor Enzyme
From Clostridium Thermocellum
pdb|3GED|B Chain B, Fingerprint And Structural Analysis Of A Apo Scor Enzyme
From Clostridium Thermocellum
pdb|3GEG|A Chain A, Fingerprint And Structural Analysis Of A Scor Enzyme With
Its Bound Cofactor From Clostridium Thermocellum
pdb|3GEG|B Chain B, Fingerprint And Structural Analysis Of A Scor Enzyme With
Its Bound Cofactor From Clostridium Thermocellum
Length = 247
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL 178
++VTGG +G + + GD V +D K + PN DV +PL
Sbjct: 5 VIVTGGGHGIGKQICLDFLEAGDKVCFID---IDEKRSADFAKERPNLFYFHGDVADPLT 61
Query: 179 LE 180
L+
Sbjct: 62 LK 63
>pdb|3PPI|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase
Type-2 From Mycobacterium Avium
pdb|3PPI|B Chain B, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase
Type-2 From Mycobacterium Avium
pdb|3PPI|C Chain C, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase
Type-2 From Mycobacterium Avium
pdb|3PPI|D Chain D, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase
Type-2 From Mycobacterium Avium
Length = 281
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVD 147
+G +V+GGAG +G V RL A G V++ D
Sbjct: 29 EGASAIVSGGAGGLGEATVRRLHADGLGVVIAD 61
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVV 146
+IV+ G +GFVGS L++ + RG V V
Sbjct: 6 KIVLIGASGFVGSALLNEALNRGFEVTAV 34
>pdb|3KB1|A Chain A, Crystal Structure Of The Nucleotide-Binding Protein Af_226
In Complex With Adp From Archaeoglobus Fulgidus,
Northeast Structural Genomics Consortium Target Gr157
pdb|3KB1|B Chain B, Crystal Structure Of The Nucleotide-Binding Protein Af_226
In Complex With Adp From Archaeoglobus Fulgidus,
Northeast Structural Genomics Consortium Target Gr157
Length = 262
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 112 LKRKGLRIVVTGGAGFVGSHLVDRLIA-----RGDSVIVVDNFFTGRKENVMHHFGNPNF 166
L + G RI V G G VG V L+A +G V ++D F G ++ H FG
Sbjct: 14 LDKIGFRIAVXSGKGGVGKSTVTALLAVHYAKQGKKVGILDADFLG--PSIPHLFGLEKG 71
Query: 167 EL-IRHDVVEPLLLE 180
++ + + +EP+L +
Sbjct: 72 KVAVSDEGLEPVLTQ 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,657,040
Number of Sequences: 62578
Number of extensions: 470445
Number of successful extensions: 1251
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1078
Number of HSP's gapped (non-prelim): 122
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)