BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019470
(340 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8NBZ7|UXS1_HUMAN UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1
SV=1
Length = 420
Score = 338 bits (868), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 158/217 (72%), Positives = 181/217 (83%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++
Sbjct: 210 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 269
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 334
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV
Sbjct: 270 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLV 306
>sp|Q5R885|UXS1_PONAB UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2
SV=1
Length = 420
Score = 338 bits (868), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 158/217 (72%), Positives = 181/217 (83%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++
Sbjct: 210 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 269
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 334
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV
Sbjct: 270 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLV 306
>sp|Q91XL3|UXS1_MOUSE UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2
SV=1
Length = 420
Score = 338 bits (867), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 158/217 (72%), Positives = 181/217 (83%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++
Sbjct: 210 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 269
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 334
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV
Sbjct: 270 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLV 306
>sp|Q5PQX0|UXS1_RAT UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1
PE=1 SV=1
Length = 420
Score = 338 bits (866), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 158/217 (72%), Positives = 181/217 (83%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++
Sbjct: 210 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 269
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 334
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV
Sbjct: 270 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLV 306
>sp|Q6DF08|UXS1_XENTR UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1
PE=2 SV=1
Length = 421
Score = 335 bits (860), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 157/217 (72%), Positives = 181/217 (83%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 91 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 150
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 151 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 210
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+GPRM ++
Sbjct: 211 EVHPQSEEYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 270
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 334
DGRVVSNF+ QAL+ E LTVYG G+QTR+FQ+VSDLV
Sbjct: 271 DGRVVSNFILQALQGEQLTVYGSGEQTRAFQYVSDLV 307
>sp|Q6GMI9|UXS1_DANRE UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2
SV=2
Length = 418
Score = 332 bits (852), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 156/217 (71%), Positives = 179/217 (82%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPL 177
RI++TGGAGFVGSHL D+L+ G V VVDNFFTGRK NV H G+ NFELI HDVVEPL
Sbjct: 88 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 147
Query: 178 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 148 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 207
Query: 238 LQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCID 297
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + GVEVR+ARIFNT+G RM ++
Sbjct: 208 EVHPQNEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGSRMHMN 267
Query: 298 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 334
DGRVVSNF+ QAL+ E LTVYG G QTR+FQ+VSDLV
Sbjct: 268 DGRVVSNFILQALQGEALTVYGSGSQTRAFQYVSDLV 304
>sp|Q57664|GALE_METJA Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0211 PE=3 SV=1
Length = 305
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 114/226 (50%), Gaps = 19/226 (8%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEPLL 178
I+VTGGAGF+GSH+VD+LI VI++DN TG K N+ NP E + D+ + L
Sbjct: 2 ILVTGGAGFIGSHIVDKLIENNYDVIILDNLTTGNKNNI-----NPKAEFVNADIRDKDL 56
Query: 179 LE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKR--VGARFLLTST 230
E V+ + H A + + NPV NV+GT+N+L + ++ + +S
Sbjct: 57 DEKINFKDVEVVIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDKIVFASSG 116
Query: 231 SEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290
VYG+P P E + PI S Y K E Y+R G+E I R N Y
Sbjct: 117 GAVYGEPNYLPVDENH-----PINPLSPYGLSKYVGEEYIKLYNRLYGIEYAILRYSNVY 171
Query: 291 GPRMCID-DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVR 335
G R + V+S F+ + L+ + ++GDG QTR F +V D+ +
Sbjct: 172 GERQDPKGEAGVISIFIDKMLKNQSPIIFGDGNQTRDFVYVGDVAK 217
>sp|Q9ZAE8|RMLB_ACTS5 dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (strain ATCC 31044
/ CBS 674.73 / SE50/110) GN=acbB PE=3 SV=2
Length = 320
Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 117/238 (49%), Gaps = 31/238 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGD--------SVIVVDNF-FTGRKENVMHHFGNPNFE 167
++I+VTGGAGF+GSH V LI+ GD V VVD + G N+ +P F
Sbjct: 1 MKILVTGGAGFIGSHFVTSLIS-GDIATPQPVTQVTVVDKLGYGGNLRNLAEASADPRFS 59
Query: 168 LIRHDV-----VEPLLLEVDQIYHLACPASPVHYKFNPVKT---IKTNVVGTLNMLGLAK 219
+R D+ +E L+ D + H A + H + V + + +N+VGT +L A
Sbjct: 60 FVRGDICDEGLIEGLMARHDTVAHFA---AETHVDRSVVASGPFVASNLVGTQVLLDAAL 116
Query: 220 R--VGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA 277
R +G RFL ST EVYG W +P+ S Y K ++ L + YH+
Sbjct: 117 RHHIG-RFLHVSTDEVYGS-----IDTGSWAEGHPLAPNSPYAASKAGSDLLALAYHQTH 170
Query: 278 GVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVR 335
G++V + R N YGPR + +++ FV + L + VYGDG+ R + VSD R
Sbjct: 171 GMDVVVTRCSNNYGPRQFPE--KMIPLFVTRLLDGLDVPVYGDGRNIRDWLHVSDHCR 226
>sp|P29782|RMLB_STRGR dTDP-glucose 4,6-dehydratase OS=Streptomyces griseus GN=strE PE=1
SV=1
Length = 328
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 111/232 (47%), Gaps = 17/232 (7%)
Query: 119 IVVTGGAGFVGSHLVDRLIARG---DSVIVVDNFFT--GRKENVMHHFGNPNFELIRHDV 173
++VTG AGF+GS V L+ G D V+ + T G +N+ G+P + R D+
Sbjct: 5 LLVTGAAGFIGSQYVRTLLGPGGPPDVVVTALDALTYAGNPDNLAAVRGHPRYRFERGDI 64
Query: 174 VEP----LLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLT 228
+ ++ DQ+ HLA + + ++TNV GT +L A R G A F+
Sbjct: 65 CDAPGRRVMAGQDQVVHLAAESHVDRSLLDASVFVRTNVHGTQTLLDAATRHGVASFVQV 124
Query: 229 STSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
ST EVYG L+H W P+ S Y K + + L + +H G++VR+ R N
Sbjct: 125 STDEVYGS-LEHGS----WTEDEPLRPNSPYSASKASGDLLALAHHVSHGLDVRVTRCSN 179
Query: 289 TYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVRLTETI 340
YGPR + +++ F+ + + +YGDG R + V D VR E +
Sbjct: 180 NYGPRQFPE--KLIPRFITLLMDGHRVPLYGDGLNVREWLHVDDHVRGIEAV 229
>sp|Q6MWV3|GALE_MYCTU UDP-glucose 4-epimerase OS=Mycobacterium tuberculosis GN=galE1 PE=3
SV=1
Length = 314
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 103/217 (47%), Gaps = 14/217 (6%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
+R +VTG AGF+GS LVDRL+A G SV+ +DNF TGR N+ H N + D+V
Sbjct: 1 MRALVTGAAGFIGSTLVDRLLADGHSVVGLDNFATGRATNLEHLADNSAHVFVEADIVTA 60
Query: 177 LLLEV------DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 230
L + + ++HLA +P NV+GT+ + A++ G R ++ ++
Sbjct: 61 DLHAILEQHRPEVVFHLAAQIDVRRSVADPQFDAAVNVIGTVRLAEAARQTGVRKIVHTS 120
Query: 231 S--EVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
S +YG P ++P ET P S Y GK E + G++ N
Sbjct: 121 SGGSIYGTPPEYPTPETA-----PTDPASPYAAGKVAGEIYLNTFRHLYGLDCSHIAPAN 175
Query: 289 TYGPRMCID-DGRVVSNFVAQALRKEPLTVYGDGKQT 324
YGPR + VV+ F L +P V+GDG T
Sbjct: 176 VYGPRQDPHGEAGVVAIFAQALLSGKPTRVFGDGTNT 212
>sp|O34886|YTCB_BACSU Uncharacterized UDP-glucose epimerase YtcB OS=Bacillus subtilis
(strain 168) GN=ytcB PE=3 SV=1
Length = 316
Score = 95.1 bits (235), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 117/233 (50%), Gaps = 24/233 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIA-RGDSVIVVDNF-----FTGRKENVMHHFGNPNFELIR 170
++I+VTG AGF+GSHL + L+ + +VI +D+F F+ + +N+ + F I+
Sbjct: 1 MKILVTGAAGFIGSHLCEELLKDKKHNVIGIDDFIGPTPFSLKLKNLKNLLPEKRFTFIK 60
Query: 171 HDVV----EPLLLEVDQIYHLAC-PA--SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA 223
+++ LL VD I+HLA P S F+P N+ +L +
Sbjct: 61 ENLLTADLASLLEGVDVIFHLAAIPGVRSSWGNHFHPYAA--HNIQALQRLLEACREHSI 118
Query: 224 R-FLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVR 282
+ F+ STS VYG+ + T ++P GV K T E L Y + G+ +
Sbjct: 119 QTFVFASTSSVYGEKQGKVSENTSLSPLSPYGVT------KLTGEKLCHVYKQSFGIPIV 172
Query: 283 IARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVR 335
I R F YGPR D + Q L+++PLT++GDG+Q+R F ++SD V+
Sbjct: 173 ILRFFTVYGPRQRPD--MAFHRLIKQHLQQKPLTIFGDGQQSRDFTYISDCVK 223
>sp|A0R5C5|GALE_MYCS2 UDP-glucose 4-epimerase OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=MSMEG_6142 PE=1 SV=2
Length = 313
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 103/218 (47%), Gaps = 14/218 (6%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
+R +VTG AGF+GS LVDRL+A G V+ +D+ +GR EN+ + FE ++ D+V+
Sbjct: 1 MRTLVTGAAGFIGSTLVDRLLADGHGVVGLDDLSSGRAENLHSAENSDKFEFVKADIVDA 60
Query: 177 ----LLLEV--DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 230
LL E + I+HLA S +P NVVGT+ + A+ G R ++ ++
Sbjct: 61 DLTGLLAEFKPEVIFHLAAQISVKRSVDDPPFDATVNVVGTVRLAEAARLAGVRKVVHTS 120
Query: 231 S--EVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
S VYG P +P E P+ S Y GK E Y ++ N
Sbjct: 121 SGGSVYGTPPAYPTSEDM-----PVNPASPYAAGKVAGEVYLNMYRNLYDLDCSHIAPAN 175
Query: 289 TYGPRMCI-DDGRVVSNFVAQALRKEPLTVYGDGKQTR 325
YGPR + VV+ F L ++GDG TR
Sbjct: 176 VYGPRQDPHGEAGVVAIFSEALLAGRTTKIFGDGSDTR 213
>sp|Q9LPG6|RHM2_ARATH Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana
GN=RHM2 PE=1 SV=1
Length = 667
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 112/240 (46%), Gaps = 20/240 (8%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRH 171
K I++TG AGF+ SH+ +RLI ++V+D + +N+ F +PNF+ ++
Sbjct: 7 KPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSDLKNLDPSFSSPNFKFVKG 66
Query: 172 DVVEPLLLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA- 223
D+ L+ +D I H A + N + K N+ GT +L K G
Sbjct: 67 DIASDDLVNYLLITENIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQI 126
Query: 224 -RFLLTSTSEVYGDPLQHPQKETYWGN--VNPIGVRSCYDEGKRTAETLTMDYHRGAGVE 280
RF+ ST EVYG+ ++ GN + + + Y K AE L M Y R G+
Sbjct: 127 RRFIHVSTDEVYGET----DEDAAVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP 182
Query: 281 VRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVRLTETI 340
V R N YGP + +++ F+ A+ +PL ++GDG RS+ + D+ E +
Sbjct: 183 VITTRGNNVYGPNQFPE--KMIPKFILLAMSGKPLPIHGDGSNVRSYLYCEDVAEAFEVV 240
>sp|B0RVL0|RMLB_XANCB dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv.
campestris (strain B100) GN=rfbB PE=3 SV=1
Length = 351
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 108/239 (45%), Gaps = 24/239 (10%)
Query: 120 VVTGGAGFVGSHLVDRLIARGDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVVEPLL 178
+VTGGAGF+G + V ++RG V+ +D + G + GN + ++ D+ + L
Sbjct: 5 LVTGGAGFIGGNFVLEAVSRGIRVVNLDALTYAGNLNTLASLEGNADHIFVKGDIGDGAL 64
Query: 179 L-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGL----------AKRV 221
+ + D + + A + P I+TNVVGTL +L +R
Sbjct: 65 VTRLLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPDTRRD 124
Query: 222 GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEV 281
RFL ST EVYG L K T P S Y K ++ L +H G+ V
Sbjct: 125 AFRFLHVSTDEVYG-TLGETGKFT---ETTPYAPNSPYSASKAASDHLVRAFHHTYGLPV 180
Query: 282 RIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVRLTETI 340
N YGP + +++ +A+AL EPL VYGDGKQ R + FVSD T+
Sbjct: 181 LTTNCSNNYGPYHFPE--KLIPLVIAKALAGEPLPVYGDGKQVRDWLFVSDHCEAIRTV 237
>sp|P37761|RMLB_NEIGO dTDP-glucose 4,6-dehydratase OS=Neisseria gonorrhoeae GN=rfbB PE=3
SV=1
Length = 346
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 109/236 (46%), Gaps = 24/236 (10%)
Query: 119 IVVTGGAGFVGSHLVDRLIARG-DSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVVEP 176
I+VTGGAGF+GS +V +I DSV+ +D + G E++ NP + + D+ +
Sbjct: 9 ILVTGGAGFIGSAVVRHIIQNTRDSVVNLDKLTYAGNLESLTDIADNPRYAFEQVDICDR 68
Query: 177 LLLEV-------DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA----------K 219
L+ D + HLA + + + I+TN+VGT ++L A K
Sbjct: 69 AELDRVFAQYRPDAVMHLAAESHVDRAIGSAGEFIRTNIVGTFDLLEAARAYWQQMPSEK 128
Query: 220 RVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGV 279
R RF ST EVYGD H + + P S Y K A+ L + R +
Sbjct: 129 REAFRFHHISTDEVYGD--LHGTDDLF-TETTPYAPSSPYSASKAAADHLVRAWQRTYRL 185
Query: 280 EVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVR 335
++ N YGPR + +++ + AL +PL VYGDG Q R + FV D R
Sbjct: 186 PSIVSNCSNNYGPRQFPE--KLIPLMILNALSGKPLPVYGDGAQIRDWLFVEDHAR 239
>sp|Q9LH76|RHM3_ARATH Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana
GN=RHM3 PE=1 SV=1
Length = 664
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 110/242 (45%), Gaps = 24/242 (9%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRH 171
K I++TG AGF+ SH+ +RL+ ++V+D + +N+ +PNF+ ++
Sbjct: 5 KPKNILITGAAGFIASHVANRLVRSYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKG 64
Query: 172 DVVEPLLL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA- 223
D+ L+ E+D I H A + N + K N+ GT +L K G
Sbjct: 65 DIASADLVNYLLITEEIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQI 124
Query: 224 -RFLLTSTSEVYGDPLQHPQKETYWGN----VNPIGVRSCYDEGKRTAETLTMDYHRGAG 278
RF+ ST EVYG+ + + + NP Y K AE L M Y R G
Sbjct: 125 RRFIHVSTDEVYGETDEDASVGNHEASQLLPTNP------YSATKAGAEMLVMAYGRSYG 178
Query: 279 VEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVRLTE 338
+ V R N YGP + +++ F+ A+ +PL ++GDG RS+ + D+ E
Sbjct: 179 LPVITTRGNNVYGPNQFPE--KLIPKFILLAMNGKPLPIHGDGSNVRSYLYCEDVAEAFE 236
Query: 339 TI 340
+
Sbjct: 237 VV 238
>sp|Q9SYM5|RHM1_ARATH Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana
GN=RHM1 PE=1 SV=1
Length = 669
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 108/238 (45%), Gaps = 24/238 (10%)
Query: 119 IVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVVE 175
I++TG AGF+ SH+ +RLI ++V+D + +N+ +PNF+ ++ D+
Sbjct: 9 ILITGAAGFIASHVANRLIRSYPDYKIVVLDKLDYCSNLKNLNPSKHSPNFKFVKGDIAS 68
Query: 176 PLLLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFL 226
L+ +D I H A + N + K N+ GT +L K G RF+
Sbjct: 69 ADLVNHLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFI 128
Query: 227 LTSTSEVYG----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVR 282
ST EVYG D L + + NP Y K AE L M Y R G+ V
Sbjct: 129 HVSTDEVYGETDEDALVGNHEASQLLPTNP------YSATKAGAEMLVMAYGRSYGLPVI 182
Query: 283 IARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVRLTETI 340
R N YGP + +++ F+ A+R + L ++GDG RS+ + D+ E +
Sbjct: 183 TTRGNNVYGPNQFPE--KLIPKFILLAMRGQVLPIHGDGSNVRSYLYCEDVAEAFEVV 238
>sp|P0C7J0|RMLB_XANCP dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=rfbB PE=3 SV=1
Length = 351
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 107/239 (44%), Gaps = 24/239 (10%)
Query: 120 VVTGGAGFVGSHLVDRLIARGDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVVEPLL 178
+VTG AGF+G + V ++RG V+ +D + G + GN + ++ D+ + L
Sbjct: 5 LVTGRAGFIGGNFVLEAVSRGIRVVNLDALTYAGNLNTLASLEGNADHIFVKGDIGDGAL 64
Query: 179 L-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGL----------AKRV 221
+ + D + + A + P I+TNVVGTL +L +R
Sbjct: 65 VTRLLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPDTRRD 124
Query: 222 GARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEV 281
RFL ST EVYG L K T P S Y K ++ L +H G+ V
Sbjct: 125 AFRFLHVSTDEVYG-TLGETGKFT---ETTPYAPNSPYSASKAASDHLVRAFHHTYGLPV 180
Query: 282 RIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVRLTETI 340
N YGP + +++ +A+AL EPL VYGDGKQ R + FVSD T+
Sbjct: 181 LTTNCSNNYGPYHFPE--KLIPLVIAKALAGEPLPVYGDGKQVRDWLFVSDHCEAIRTV 237
>sp|Q9S642|RMLB_NEIMA dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup A
/ serotype 4A (strain Z2491) GN=rfbB1 PE=3 SV=1
Length = 341
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 108/237 (45%), Gaps = 24/237 (10%)
Query: 118 RIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVVE 175
+I+VTGGAGF+GS +V +I DSV+ +D + G E++ NP + + D+ +
Sbjct: 3 KILVTGGAGFIGSAVVRHIIRNTQDSVVNLDKLTYAGNLESLTDIADNPRYAFEQVDICD 62
Query: 176 PLLLEV-------DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA---------- 218
L+ D + HLA + + + I+TN+VGT N+L A
Sbjct: 63 RAELDRVFAQHRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYRQQMPSE 122
Query: 219 KRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAG 278
K RF ST EVYGD + + P S Y K +++ L + R G
Sbjct: 123 KHEAFRFHHISTDEVYGDL---SGTDDLFTETAPYAPSSPYSASKASSDHLVRAWLRTYG 179
Query: 279 VEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVR 335
+ + N YGP + +++ + AL +PL VYGDG Q R + FV D R
Sbjct: 180 LPTIVTNCSNNYGPYHFPE--KLIPLMILNALDGKPLPVYGDGMQIRDWLFVEDHAR 234
>sp|P55294|RMLB_NEIMB dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rfbB1 PE=3 SV=2
Length = 355
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 108/237 (45%), Gaps = 24/237 (10%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVVE 175
+I+VTGGAGF+GS +V +I D+V+ VD + G E++ NP + + D+ +
Sbjct: 3 KILVTGGAGFIGSAVVRHIIRNTRDAVVNVDKLTYAGNLESLTEVADNPRYAFEQVDICD 62
Query: 176 PLLLEV-------DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK--------- 219
L+ D + HLA + + + I+TN+VGT N+L A+
Sbjct: 63 RAELDRVFAQYRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYWQQMPSE 122
Query: 220 -RVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAG 278
RF ST EVYGD + + P S Y K +++ L + R G
Sbjct: 123 QHEAFRFHHISTDEVYGDL---GGTDDLFTETAPYAPSSPYSASKASSDHLVRAWLRTYG 179
Query: 279 VEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVR 335
+ + N YGP + +++ + AL +PL VYGDG Q R + FV D R
Sbjct: 180 LPTIVTNCSNNYGPYHFPE--KLIPLMILNALDGKPLPVYGDGMQIRDWLFVEDHAR 234
>sp|P44914|RMLB_HAEIN dTDP-glucose 4,6-dehydratase OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=rffG PE=3 SV=1
Length = 338
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 110/241 (45%), Gaps = 26/241 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNFFTGRKENVMHHF-GNPNFELIRHDVV 174
+ I+VTGG+GF+GS L+ +I D VI +D ++ + NP + + D+
Sbjct: 2 MNILVTGGSGFIGSALIRYIINHTQDFVINIDKLTYAANQSALREVENNPRYVFEKVDIC 61
Query: 175 EPLLLEV-------DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK-------- 219
+ ++E D + HLA + ++TN+VGT +L +AK
Sbjct: 62 DLNVIENIFEKYQPDAVMHLAAESHVDRSISGAADFVQTNIVGTYTLLEVAKNYWHTLDE 121
Query: 220 --RVGARFLLTSTSEVYGD-PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG 276
+ RF ST EVYGD L P + +P S Y K + L +HR
Sbjct: 122 AKKTTFRFHHISTDEVYGDLSLSEPA----FTEQSPYHPSSPYSASKAASNHLVQAWHRT 177
Query: 277 AGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVRL 336
G+ V I N YG + +++ ++ A+ +PL +YGDG+Q R + FV D V+
Sbjct: 178 YGLPVIITNSSNNYGAYQHAE--KLIPLMISNAVMGKPLPIYGDGQQIRDWLFVEDHVQA 235
Query: 337 T 337
+
Sbjct: 236 S 236
>sp|P55462|RFBB_RHISN Probable dTDP-glucose 4,6-dehydratase OS=Rhizobium sp. (strain
NGR234) GN=NGR_a03580 PE=3 SV=1
Length = 350
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 24/237 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVVE 175
+RI+VTGGAGF+GS LV L++ V+ VD + G ++ G N+ +R D+ +
Sbjct: 1 MRILVTGGAGFIGSALVRYLVSINAEVLNVDKLTYAGNLASLKPVEGLRNYRFLRADICD 60
Query: 176 PLLL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA----- 223
+ + + D + HLA + ++TNV GT ML A++ +
Sbjct: 61 RVAINEAFETFQPDYVIHLAAESHVDRSITGADDFVQTNVNGTFTMLETARQYWSNLSQN 120
Query: 224 -----RFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAG 278
+ L ST EVYG Q E V+P S Y K ++ + R G
Sbjct: 121 RKAFFKMLHVSTDEVYGSLGDRGQFE----EVSPYDPSSPYSASKAASDHFATAWQRTYG 176
Query: 279 VEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVR 335
+ V I+ N YGP + +++ + AL ++PL VYG G R + +V D R
Sbjct: 177 LPVVISNCSNNYGPFHFPE--KLIPLMILNALDRKPLPVYGTGSNIRDWLYVDDHAR 231
>sp|Q54WS6|TGDS_DICDI dTDP-D-glucose 4,6-dehydratase OS=Dictyostelium discoideum GN=tgds
PE=3 SV=1
Length = 434
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 109/240 (45%), Gaps = 19/240 (7%)
Query: 118 RIVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVV 174
+I++TGGAGF+GSHL L + +IV+D + N+ NF+ + +++
Sbjct: 11 KILITGGAGFIGSHLAIYLTKKFKNSKIIVLDKLDYCSNINNLGCVLKELNFKFYKGNIL 70
Query: 175 EPLLLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFL 226
+ LLE +D + HLA + +K + N++GT +L K +F+
Sbjct: 71 DSELLENIFEKEKIDIVIHLAAYTHVDNSFKQSIKFTENNILGTHYLLETCKNYKLKKFI 130
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGVRSC------YDEGKRTAETLTMDYHRGAGVE 280
ST EVYG L + +S Y K AE L Y++ +
Sbjct: 131 YVSTDEVYGSGLIEDNDDNNNSINQSSNEKSILNPTNPYSASKAGAEHLVQSYYKSFKLP 190
Query: 281 VRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVRLTETI 340
V I R N YGP+ + +++ F+ L + T++G GK TR++ ++ D+V + I
Sbjct: 191 VIITRANNIYGPKQYPE--KIIPKFINLLLNNKKCTIHGTGKNTRNYLYIDDIVSAFDII 248
>sp|P27830|RMLB2_ECOLI dTDP-glucose 4,6-dehydratase 2 OS=Escherichia coli (strain K12)
GN=rffG PE=1 SV=3
Length = 355
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 24/237 (10%)
Query: 118 RIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVVE 175
+I++TGGAGF+GS LV +I D+V+VVD + G ++ + F + D+ +
Sbjct: 3 KILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICD 62
Query: 176 PLLL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA---------- 218
L + D + HLA + P I+TN+VGT +L A
Sbjct: 63 RAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTED 122
Query: 219 KRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAG 278
K+ RF ST EVYGD + ++ P S Y K +++ L + R G
Sbjct: 123 KKSAFRFHHISTDEVYGDL---HSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYG 179
Query: 279 VEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVR 335
+ I N YGP + +++ + AL + L VYG+G+Q R + +V D R
Sbjct: 180 LPTLITNCSNNYGPYHFPE--KLIPLMILNALAGKSLPVYGNGQQIRDWLYVEDHAR 234
>sp|P14169|RFBE_SALTI CDP-paratose 2-epimerase OS=Salmonella typhi GN=rfbE PE=1 SV=2
Length = 338
Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 111/247 (44%), Gaps = 27/247 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGN-PNFELIRHDV-- 173
+++++TGG GF+GS+L +++G +IV DN + +H + NFE + D+
Sbjct: 1 MKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRN 60
Query: 174 ---VEPLLLEV--DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFL 226
V L+ + D +HLA + NP + NV GTLN+L ++ + +
Sbjct: 61 KNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNII 120
Query: 227 LTSTSEVYGDPLQHPQKETY-----------WGNVNPIGVRSCYDEGKRTAETLTMDYHR 275
+ST++VYGD Q+ ET + + S Y K A+ +DY R
Sbjct: 121 YSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYAR 180
Query: 276 GAGVEVRIARIFNTYGPR-MCIDDGRVVSNFVAQALR-----KEPLTVYGDGKQTRSFQF 329
G+ + R + YG R D V F +A+ +P T+ G+GKQ R
Sbjct: 181 IFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLH 240
Query: 330 VSDLVRL 336
D++ L
Sbjct: 241 AEDMISL 247
>sp|O06329|RMLB_MYCTU dTDP-glucose 4,6-dehydratase OS=Mycobacterium tuberculosis GN=rmlB
PE=1 SV=1
Length = 331
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 102/224 (45%), Gaps = 14/224 (6%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIAR--GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDV 173
+R++VTGGAGF+G++ V + D+V V+D + GR+E++ L++ D+
Sbjct: 1 MRLLVTGGAGFIGTNFVHSAVREHPDDAVTVLDALTYAGRRESLAD--VEDAIRLVQGDI 58
Query: 174 -----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLT 228
V L+ E D + H A + + NP + TNV+GT +L +R G R
Sbjct: 59 TDAELVSQLVAESDAVVHFAAESHVDNALDNPEPFLHTNVIGTFTILEAVRRHGVRLHHI 118
Query: 229 STSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
ST EVYGD L+ + + P S Y K A+ L + R GV I+ N
Sbjct: 119 STDEVYGD-LELDDRARF-TESTPYNPSSPYSATKAGADMLVRAWVRSYGVRATISNCSN 176
Query: 289 TYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 332
YGP ++ + + + L +YG G R + V D
Sbjct: 177 NYGPYQHVE--KFIPRQITNVLTGRRPKLYGAGANVRDWIHVDD 218
>sp|P37777|RMLB_SHIFL dTDP-glucose 4,6-dehydratase OS=Shigella flexneri GN=rfbB PE=3 SV=2
Length = 361
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 109/249 (43%), Gaps = 28/249 (11%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVV 174
++I+VTGGAGF+GS +V +I DSV+ VD + G E++ + + D+
Sbjct: 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYAFEHADIC 60
Query: 175 EPLLL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA--------- 218
+ + + + D + HLA + P I+TN+VGT +L A
Sbjct: 61 DAVAMSRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALND 120
Query: 219 -KRVGARFLLTSTSEVYGDPLQHPQKET------YWGNVNPIGVRSCYDEGKRTAETLTM 271
K+ RF ST EVYGD L HP + + S Y K +++ L
Sbjct: 121 EKKKSFRFHHISTDEVYGD-LPHPDEANNNEALPLFTETTAYAPSSPYSASKASSDHLVR 179
Query: 272 DYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 331
+ R G+ + N YGP + +++ + AL + L +YG G Q R + +V
Sbjct: 180 AWKRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKALPIYGKGDQIRDWLYVE 237
Query: 332 DLVRLTETI 340
D R T+
Sbjct: 238 DHARALYTV 246
>sp|P37759|RMLB1_ECOLI dTDP-glucose 4,6-dehydratase 1 OS=Escherichia coli (strain K12)
GN=rfbB PE=3 SV=2
Length = 361
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 111/249 (44%), Gaps = 28/249 (11%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVV 174
++I+VTGGAGF+GS +V +I DSV+ VD + G +E++ + + D+
Sbjct: 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNRESLADVSDSERYVFEHADIC 60
Query: 175 E-PLLLEV------DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA--------- 218
+ P + + D + HLA + P I+TN+VGT +L A
Sbjct: 61 DAPAMARIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDS 120
Query: 219 -KRVGARFLLTSTSEVYGDPLQHP------QKETYWGNVNPIGVRSCYDEGKRTAETLTM 271
K+ RF ST EVYGD L HP ++ + S Y K +++ L
Sbjct: 121 DKKNSFRFHHISTDEVYGD-LPHPDEVNNTEELPLFTETTAYAPSSPYSASKASSDHLVR 179
Query: 272 DYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 331
+ R G+ + N YGP + +++ + AL + L +YG G Q R + +V
Sbjct: 180 AWKRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKALPIYGKGDQIRDWLYVE 237
Query: 332 DLVRLTETI 340
D R T+
Sbjct: 238 DHARALYTV 246
>sp|P26391|RMLB_SALTY dTDP-glucose 4,6-dehydratase OS=Salmonella typhimurium (strain LT2
/ SGSC1412 / ATCC 700720) GN=rfbB PE=1 SV=1
Length = 361
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 109/244 (44%), Gaps = 28/244 (11%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVV 174
++I++TGGAGF+GS +V +I D+V+ +D + G E++ + + D+
Sbjct: 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADIC 60
Query: 175 EPLLL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA---- 223
+ + + D + HLA + P I+TN+VGT +L +A++ +
Sbjct: 61 DSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGE 120
Query: 224 ------RFLLTSTSEVYGDPLQHPQKET------YWGNVNPIGVRSCYDEGKRTAETLTM 271
RF ST EVYGD L HP + + S Y K +++ L
Sbjct: 121 DKKNNFRFHHISTDEVYGD-LPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVR 179
Query: 272 DYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 331
+ R G+ + N YGP + +++ + AL +PL +YG G Q R + +V
Sbjct: 180 AWRRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKPLPIYGKGDQIRDWLYVE 237
Query: 332 DLVR 335
D R
Sbjct: 238 DHAR 241
>sp|O54067|LPSL_RHIME UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti (strain 1021)
GN=lspL PE=3 SV=2
Length = 341
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 101/232 (43%), Gaps = 19/232 (8%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNF-------FTGRKENVMHH---FGNPNF 166
+R ++TG AGF+G H+ RLI G V+ D R+ ++ F
Sbjct: 1 MRYLITGTAGFIGFHVAKRLIDEGHFVVGFDGMTPYYDVTLKERRHAILQRSNGFKAVTA 60
Query: 167 ELIRHDVVE--PLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR 224
L ++ L E + I HLA A + NP + N+VG+ NML LAK + +
Sbjct: 61 MLEDRAALDRAAELAEPEVIIHLAAQAGVRYSLENPKAYVDANLVGSWNMLELAKAIAPK 120
Query: 225 FL-LTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRI 283
L L STS +YG + P E + P+ + Y K++ E + Y V
Sbjct: 121 HLMLASTSSIYGANEKIPFAEADRAD-EPM---TLYAATKKSMELMAHSYAHLYKVPTTS 176
Query: 284 ARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVR 335
R F YGP D + FV P+ +YG+G+ +R F ++ DLV
Sbjct: 177 FRFFTVYGPWGRPD--MALFKFVDAIHNGRPIDIYGEGRMSRDFTYIDDLVE 226
>sp|P55293|RMLB_ECOLX dTDP-glucose 4,6-dehydratase OS=Escherichia coli GN=rfbB PE=1 SV=1
Length = 361
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 111/249 (44%), Gaps = 28/249 (11%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIAR-GDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDVV 174
++I+VTGGAGF+GS +V +I DSV+ VD + G E++ + + D+
Sbjct: 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLAEISDSERYSFENADIC 60
Query: 175 EPL-------LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA--------- 218
+ ++D + HLA + P I+TN+VGT +L A
Sbjct: 61 DAEGDGLYFGQHQLDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSGLDD 120
Query: 219 -KRVGARFLLTSTSEVYGDPLQHPQK----ET--YWGNVNPIGVRSCYDEGKRTAETLTM 271
K+ RF ST EVYGD L HP + ET + S Y K +++ L
Sbjct: 121 EKKKNFRFHHISTDEVYGD-LPHPDEVNSNETLQLFTETTAYAPSSPYSASKASSDHLVR 179
Query: 272 DYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 331
+ R G+ ++ N YGP + +++ + AL + L +YG G Q R + +V
Sbjct: 180 AWKRTYGLPTIVSNCSNNYGPYHFPE--KLIPLVILNALEGKALPIYGKGDQIRDWLYVE 237
Query: 332 DLVRLTETI 340
D R T+
Sbjct: 238 DHARALYTV 246
>sp|A2Z7B3|GME1_ORYSI GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica
GN=OsI_032456 PE=2 SV=1
Length = 378
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 109/239 (45%), Gaps = 22/239 (9%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
LRI +TG GF+GSH+ RL + G +I D + E++ F L+ V++
Sbjct: 30 LRISITGAGGFIGSHIARRLKSEGHYIIASD---WKKNEHMTEDMFCHEFHLVDLRVMDN 86
Query: 177 LLL---EVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTSTS 231
L VD +++LA + + + N + N + + NML A+ G RF S++
Sbjct: 87 CLKVTNSVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSA 146
Query: 232 EVYGDPLQHPQ----KETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
+Y + Q KE+ + P + Y K E L Y + G+E R+ R
Sbjct: 147 CIYPEFKQLETNVSLKES---DAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFH 203
Query: 288 NTYGPRMCIDDGR--VVSNFVAQA-LRKEPLTVYGDGKQTRSFQFVSDLV----RLTET 339
N YGP GR + F +A + ++GDG QTRSF F+ + V RLT++
Sbjct: 204 NIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKS 262
>sp|P21977|GALE_STRTR UDP-glucose 4-epimerase OS=Streptococcus thermophilus GN=galE PE=3
SV=1
Length = 332
Score = 78.2 bits (191), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 106/232 (45%), Gaps = 21/232 (9%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARG-DSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVE 175
+ I+V GGAG++GSH+VDRL+ +G + V+VVD+ TG + V +L D +
Sbjct: 1 MAILVLGGAGYIGSHMVDRLVEKGQEKVVVVDSLVTGHRAAVHPDAIFYQGDLSDQDFMR 60
Query: 176 PLLLE---VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL-TSTS 231
+ E VD + H A + P+K N G + +L + G ++++ +ST+
Sbjct: 61 KVFKENPDVDAVIHFAAYSLVGESMEKPLKYFDNNTAGMVKLLEVMNECGVKYIVFSSTA 120
Query: 232 EVYGDPLQHPQKETYWGN-VNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTY 290
YG P + P ET N +NP Y E K ET+ + G++ R FN
Sbjct: 121 ATYGIPEEIPILETTPQNPINP------YGESKLMMETIMKWSDQAYGIKYVPLRYFNVA 174
Query: 291 GPRMCIDDGRVVSNF--------VAQALRKEPLTVYGDGKQTRSFQFVSDLV 334
G + + R S VAQ +R E + ++GD T V D V
Sbjct: 175 GANLMVRLVRTRSETHLLPIILQVAQGVR-EKIMIFGDDYNTPDGTNVRDYV 225
>sp|Q2R1V8|GME2_ORYSJ GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp. japonica
GN=GME-2 PE=2 SV=2
Length = 371
Score = 78.2 bits (191), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 108/240 (45%), Gaps = 24/240 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
LRI +TG GF+ SH+ RL + G +I D + E++ F L+ V++
Sbjct: 23 LRISITGAGGFIASHIARRLKSEGHYIIASD---WKKNEHMTEDMFCHEFHLVDLRVMDN 79
Query: 177 LL---LEVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTS 231
L VD +++LA + + + N + N + + NML A+ G RF S++
Sbjct: 80 CLKVTTGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSA 139
Query: 232 EVYG-----DPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
+Y D + ++ W P + Y K E L Y + G+E R+ R
Sbjct: 140 CIYPEFKQLDTVVSLKESDAW----PAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRF 195
Query: 287 FNTYGPRMCIDDGR--VVSNFVAQALRK-EPLTVYGDGKQTRSFQFVSDLV----RLTET 339
N YGP GR + F +AL + ++GDG QTRSF F+ + V RLT++
Sbjct: 196 HNIYGPFGTWKGGREKAPAAFCRKALTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKS 255
>sp|B4ETL7|ARNA_PROMH Bifunctional polymyxin resistance protein ArnA OS=Proteus mirabilis
(strain HI4320) GN=arnA PE=3 SV=1
Length = 660
Score = 78.2 bits (191), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 113/259 (43%), Gaps = 28/259 (10%)
Query: 102 VNSGGKIPLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHF 161
V G K +KR+ R+++ G GF+G+HL +RL+ G+ I + + E +
Sbjct: 302 VRVGPKATAQVKRRQ-RVLILGVNGFIGNHLTERLLKDGNYDIYGMDIGSSAIERFI--- 357
Query: 162 GNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNML 215
GNP F I DV +E + + D I L A+P+ Y NP++ + + L ++
Sbjct: 358 GNPRFHFIEGDVSIHTEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIV 417
Query: 216 GLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGN----VNPIG-VRSCYDEGKRTAETLT 270
+ R + STSEVYG KE N V PI R Y K+ + +
Sbjct: 418 RYCVKYNKRIIFPSTSEVYG---MCDDKEFDEDNSRLIVGPINKQRWIYSVSKQLLDRVI 474
Query: 271 MDYHRGAGVEVRIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQT 324
Y G++ + R FN GPR+ I R ++ + + P+ + G+Q
Sbjct: 475 WAYGAKEGLKFTLFRPFNWMGPRLDNLNSARIGSSRAITQLILNLVEGSPIKLVDGGEQK 534
Query: 325 RSFQFVSD----LVRLTET 339
R F ++D L R+ E
Sbjct: 535 RCFTDINDGIEALFRIIEN 553
>sp|A3C4S4|GME1_ORYSJ GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica
GN=GME-1 PE=1 SV=1
Length = 378
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 109/239 (45%), Gaps = 22/239 (9%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
LRI +TG GF+GSH+ RL + G +I D + E++ F L+ V++
Sbjct: 30 LRISITGAGGFIGSHIARRLKSEGHYIIASD---WKKNEHMTEDMFCHEFHLVDLRVMDN 86
Query: 177 LLL---EVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTSTS 231
L VD +++LA + + + N + N + + NML A+ G RF S++
Sbjct: 87 CLKVTNGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSA 146
Query: 232 EVYGDPLQHPQ----KETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
+Y + Q KE+ + P + Y K E L Y + G+E R+ R
Sbjct: 147 CIYPEFKQLETNVSLKES---DAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFH 203
Query: 288 NTYGPRMCIDDGR--VVSNFVAQA-LRKEPLTVYGDGKQTRSFQFVSDLV----RLTET 339
N YGP GR + F +A + ++GDG QTRSF F+ + V RLT++
Sbjct: 204 NIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKS 262
>sp|A0QSK6|RMLB_MYCS2 dTDP-glucose 4,6-dehydratase OS=Mycobacterium smegmatis (strain
ATCC 700084 / mc(2)155) GN=rmlB PE=1 SV=1
Length = 331
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 16/225 (7%)
Query: 117 LRIVVTGGAGFVGSHLVDRLI--ARGDSVIVVDNF-FTGRKENVMHHFGNPNFELIRHDV 173
+R++VTGGAGF+G++ V + AR S+ V+D + G +E++ L++ D+
Sbjct: 1 MRLLVTGGAGFIGANFVHLALREARTSSITVLDALTYAGSRESLAP--VADRIRLVQGDI 58
Query: 174 VEPLLL-----EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLT 228
+ L+ E D + H A + +P + +NVVGT +L +R R
Sbjct: 59 TDAALVGDLVAESDAVVHFAAETHVDNALADPEPFLHSNVVGTYTILEAVRRHNVRLHHV 118
Query: 229 STSEVYGD-PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
ST EVYGD L +P + + P S Y K A+ L + R GV I+
Sbjct: 119 STDEVYGDLELDNPAR---FNETTPYNPSSPYSSTKAAADLLVRAWVRSYGVRATISNCS 175
Query: 288 NTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 332
N YGP ++ + + + L +YG G R + V D
Sbjct: 176 NNYGPYQHVE--KFIPRQITNVLTGRRPKLYGAGANVRDWIHVDD 218
>sp|Q58455|Y1055_METJA Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1055 PE=3 SV=1
Length = 326
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 106/236 (44%), Gaps = 31/236 (13%)
Query: 119 IVVTGGAGFVGSHLVDRLIARGDS--VIVVDNF-------FTGRKENVMHHFGNPNFELI 169
I+VTG AGF+G HL L+ + VI +DN ++ ++ ++ N F +
Sbjct: 6 ILVTGSAGFIGFHLSKYLMDNYEDLKVIGIDNLNNYYNPVLKEKRNEILKNYENYTFIKL 65
Query: 170 R----HDVVEPLL-LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A 223
D+VE L E+D I HL A + NP IK+N +GTLN+ A+R
Sbjct: 66 DFSDWDDLVENLKDKEIDLIVHLGAQAGVRYSLQNPWAYIKSNEMGTLNIFEFARRFDIE 125
Query: 224 RFLLTSTSEVYGDPLQHPQKETYWGNVN-PIGVRSCYDEGKRTAETLTMDYHRGAGVEVR 282
+ + S+S VYG + P E V+ PI S Y KR+ E + YH G+++
Sbjct: 126 KVVYASSSSVYGGNRKIPFSED--DRVDKPI---SLYASTKRSNELMAHVYHHLYGIKMI 180
Query: 283 IARIFNTYG----PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 334
R F YG P M F L + + VY G R F ++SD+V
Sbjct: 181 GLRFFTVYGEYGRPDMA------YFKFAKNILLGKEIEVYNYGNMERDFTYISDVV 230
>sp|P39858|CAPI_STAAU Protein CapI OS=Staphylococcus aureus GN=capI PE=3 SV=1
Length = 334
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 108/232 (46%), Gaps = 20/232 (8%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDN----FFTGRKENVMHHFGNPNF-----E 167
++I++TG AGF+GSHL +LI +G VI VD+ + KE+ + G NF +
Sbjct: 1 MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK 60
Query: 168 LIRHDVVEPLLLEV--DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARF 225
L +D + + ++ + + +LA A + NP I +N+VG +N+L ++ +
Sbjct: 61 LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQN 120
Query: 226 LL-TSTSEVYGDPLQHPQKETYWGNVN-PIGVRSCYDEGKRTAETLTMDYHRGAGVEVRI 283
L+ S+S VYG P + N++ P+ S Y K++ E + Y +
Sbjct: 121 LIYASSSSVYGANTSKPFSTS--DNIDHPL---SLYAATKKSNELMAHTYSHLYNLPTTG 175
Query: 284 ARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVR 335
R F YGP D + F + + + VY G R F +V D+V
Sbjct: 176 LRFFTVYGPWGRPD--MALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVE 225
>sp|Q93VR3|GME_ARATH GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana GN=At5g28840 PE=1
SV=1
Length = 377
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 107/239 (44%), Gaps = 17/239 (7%)
Query: 115 KGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVV 174
+ L+I +TG GF+ SH+ RL G VI D + E++ F L+ V+
Sbjct: 26 ENLKISITGAGGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRVM 82
Query: 175 EPLLL---EVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTS 229
E L VD +++LA + + + N + N + + NM+ A+ G RF S
Sbjct: 83 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 142
Query: 230 TSEVYGD--PLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIF 287
++ +Y + L+ + P + Y K E L Y++ G+E RI R
Sbjct: 143 SACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFH 202
Query: 288 NTYGPRMCIDDGR--VVSNFVAQA-LRKEPLTVYGDGKQTRSFQFVSDLV----RLTET 339
N YGP GR + F +A + ++GDG QTRSF F+ + V RLT++
Sbjct: 203 NIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKS 261
>sp|Q7WTB1|GALE_LACHE UDP-glucose 4-epimerase OS=Lactobacillus helveticus GN=galE PE=2
SV=1
Length = 330
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 32/243 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
++++V GGAG++GSH V L+ G+ V+V+D +TG ++ V +P + + D+ +
Sbjct: 1 MKVLVIGGAGYIGSHAVRELVKEGNDVLVLDALYTGHRKAV-----DPKAKFYQGDIEDT 55
Query: 177 LLL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL-T 228
L+ ++D + H A + P+K NV G +++L ++L+ +
Sbjct: 56 FLVSKILRDEKIDAVMHFAAYSLVPESVKKPLKYYDNNVTGMISLLQAMNDANVKYLVFS 115
Query: 229 STSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
S++ YG P + P E +NPI + Y E K E + + G++ R FN
Sbjct: 116 SSAATYGIPKKLPITED--TPLNPI---NPYGETKMMMEKIMAWADKADGIKYTALRYFN 170
Query: 289 TYGPRMCIDDGRV----------VSNFVAQALRKE-PLTVYGDGKQTRSFQFVSDLVRLT 337
G DG + + N + A+ + T++GD T+ V D V++
Sbjct: 171 VAG---ASSDGSIGEDHAPETHLIPNILKSAISGDGKFTIFGDDYDTKDGTNVRDYVQVE 227
Query: 338 ETI 340
+ I
Sbjct: 228 DLI 230
>sp|Q8VDR7|TGDS_MOUSE dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=Tgds PE=2 SV=2
Length = 355
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 18/234 (7%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVV--DNF-FTGRKENVMHHFGNPNFELIRHDVV 174
R++VTGGAGF+ SH++ L+ ++V D + +N+ N++ I+ D+
Sbjct: 19 RVLVTGGAGFIASHVIVSLVEDYPDYMIVNLDKLDYCASLKNLEPVSNKQNYKFIQGDIC 78
Query: 175 EP----LLLEVDQIYHLACPASPVHYKFNPVKTIK---TNVVGTLNMLGLAKRVGA-RFL 226
+ LL EV++I + A+ H + V+ + NV GT ++ A G +F+
Sbjct: 79 DSHFVKLLFEVEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVNAAYEAGVEKFI 138
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
ST EVYG L E+ +P + Y K AE Y V I R
Sbjct: 139 YVSTDEVYGGSLDQEFDES-----SPKQPTNPYASSKAAAECFVQSYWERYKFPVVITRS 193
Query: 287 FNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVRLTETI 340
N YGP + +V+ F++ ++G G Q R+F + +D+V T+
Sbjct: 194 SNVYGPHQYPE--KVIPKFISLLQHNRKCCIHGSGLQRRNFLYAADVVEAFLTV 245
>sp|A0KGY6|ARNA_AERHH Bifunctional polymyxin resistance protein ArnA OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=arnA PE=3 SV=1
Length = 663
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 112/262 (42%), Gaps = 38/262 (14%)
Query: 105 GGKIPLGLKRKGL-RIVVTGGAGFVGSHLVDRLIARGDSVI--------VVDNFFTGRKE 155
G K L++ L R+++ G GF+G+HL +RL+ G + VD F
Sbjct: 305 GAKASNALRKARLTRVLILGVNGFIGNHLTERLLQDGGYEVYGLDIGSSAVDRFI----- 359
Query: 156 NVMHHFGNPNFELIRHDV------VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVV 209
G+PNF + D+ +E + + D I L A+P+ Y NP++ + +
Sbjct: 360 ------GHPNFHFVEGDISIHTEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFE 413
Query: 210 GTLNMLGLAKRVGARFLLTSTSEVYGDPLQHP-QKETYWGNVNPIG-VRSCYDEGKRTAE 267
L ++ + R + STSEVYG H +++ V PI R Y K+ +
Sbjct: 414 ENLKIVRYCVKYHKRIIFPSTSEVYGMCDDHSFDEDSSRLIVGPINKQRWIYSVSKQLLD 473
Query: 268 TLTMDYHRGAGVEVRIARIFNTYGPRM-CIDDGRV-----VSNFVAQALRKEPLTVYGDG 321
+ Y + G+ + R FN GPR+ +D R+ ++ + + P+ + G
Sbjct: 474 RVIWAYGKKEGLNFTLFRPFNWMGPRLDSLDSARIGSSRAITQLILNLVDGTPIQLVDGG 533
Query: 322 KQTRSFQFVSD----LVRLTET 339
Q R F + D L R+ E
Sbjct: 534 AQKRCFTDIEDGIEALFRIIEN 555
>sp|Q9LIS3|GAE6_ARATH UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1
SV=1
Length = 460
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 108/245 (44%), Gaps = 40/245 (16%)
Query: 116 GLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVE 175
GL ++VTG AGFVGSH L RGD V+ DNF + + +P+ + R +++E
Sbjct: 111 GLSVLVTGAAGFVGSHCSLALRKRGDGVLGFDNF---------NDYYDPSLKRARQELLE 161
Query: 176 --------------PLLLEV------DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNML 215
PLL ++ I HLA A + NP I +N+ G +N+L
Sbjct: 162 KQQVFIVEGDLNDGPLLRKLFDVVPFTHILHLAAQAGVRYAMKNPQSYIASNIAGFVNLL 221
Query: 216 GLAKRVGAR--FLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDY 273
+AK + + S+S VYG ++P E + + P S Y K+ E + Y
Sbjct: 222 EVAKAANPQPAIVWASSSSVYGLNTENPFSEEHRTD-QPA---SLYAATKKAGEEIAHTY 277
Query: 274 HRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVY--GDGKQ-TRSFQFV 330
+ G+ + R F YGP D F L + + +Y D ++ R F ++
Sbjct: 278 NHIYGLSLTGLRFFTVYGPWGRPDMAYFF--FTKDILHGKSIDIYRTQDNQEVARDFTYI 335
Query: 331 SDLVR 335
D+V+
Sbjct: 336 DDIVK 340
>sp|O95455|TGDS_HUMAN dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=TGDS PE=2 SV=1
Length = 350
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 105/234 (44%), Gaps = 18/234 (7%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVV--DNF-FTGRKENVMHHFGNPNFELIRHDVV 174
R++VTGGAGF+ SH++ L+ + +++ D + +N+ N++ I+ D+
Sbjct: 19 RVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQGDIC 78
Query: 175 EP----LLLEVDQIYHLACPASPVHYKFNPVKTIK---TNVVGTLNMLGLAKRVGA-RFL 226
+ LL E ++I + A+ H + V+ + NV GT ++ A +F+
Sbjct: 79 DSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAHEARVEKFI 138
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
ST EVYG L E+ +P + Y K AE Y V I R
Sbjct: 139 YVSTDEVYGGSLDKEFDES-----SPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRS 193
Query: 287 FNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVRLTETI 340
N YGP + +V+ F++ ++G G QTR+F + +D+V T+
Sbjct: 194 SNVYGPHQYPE--KVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVEAFLTV 245
>sp|A8FRR2|ARNA_SHESH Bifunctional polymyxin resistance protein ArnA OS=Shewanella
sediminis (strain HAW-EB3) GN=arnA PE=3 SV=1
Length = 660
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 102/236 (43%), Gaps = 25/236 (10%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV---- 173
++++ G GF+G+HL RL+ G I + + + E H +P+F + D+
Sbjct: 319 KVLIMGANGFIGNHLTKRLLDDGKYEIYAMDMSSSQIE---QHLSHPDFHFVEGDITIHN 375
Query: 174 --VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 231
+E + + D + L A+P+ Y NP++ + + L ++ + R + STS
Sbjct: 376 EWIEYHIKKCDIVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRACVKYDKRIIFPSTS 435
Query: 232 EVYGDPLQHPQKETYWGNVNPIGV------RSCYDEGKRTAETLTMDYHRGAGVEVRIAR 285
EVYG E + + +P+ R Y K+ + + Y + ++ + R
Sbjct: 436 EVYG----MCTDEEFDEDTSPLITGPINRQRWIYSTSKQLLDRVIWAYGKKDNLKFTLFR 491
Query: 286 IFNTYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVR 335
FN GPR+ + R ++ + + P+ + G+Q R F +S+ +
Sbjct: 492 PFNWMGPRLDSLNSARVGSSRAITQLILNLVEGTPIKLIDGGEQKRCFTDISEAIE 547
>sp|P95780|RMLB_STRMU dTDP-glucose 4,6-dehydratase OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=rmlB PE=1 SV=2
Length = 348
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 104/233 (44%), Gaps = 24/233 (10%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSV--IVVDNF-FTGRKENVMHHFGNPNFELIRHDV- 173
I+VTGGAGF+GS+ V + V V+D + G + N+ G+ EL+ D+
Sbjct: 6 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNRANLEEILGD-RVELVVGDIA 64
Query: 174 ----VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 229
V+ L + D I H A + + +P I TN VGT +L A++ RF S
Sbjct: 65 DSELVDKLAAKADAIVHYAAESHNDNSLKDPSPFIYTNFVGTYILLEAARKYDIRFHHVS 124
Query: 230 TSEVYGD-PLQHP---------QKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGV 279
T EVYGD PL+ +K T NP S Y K ++ + + R GV
Sbjct: 125 TDEVYGDLPLREDLPGHGEGPGEKFTAETKYNP---SSPYSSTKAASDLIVKAWVRSFGV 181
Query: 280 EVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 332
+ I+ N YGP I+ + + + L +YG+GK R + +D
Sbjct: 182 KATISNCSNNYGPYQHIE--KFIPRQITNILSGIKPKLYGEGKNVRDWIHTND 232
>sp|O84903|GALE_LACCA UDP-glucose 4-epimerase OS=Lactobacillus casei GN=galE PE=3 SV=1
Length = 331
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 26/238 (10%)
Query: 117 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDVVEP 176
+ I V GGAG++GSH V +L+A G+ V+V+DN TG ++ V +P + D+ +
Sbjct: 1 MTIAVLGGAGYIGSHTVKQLLAAGEDVVVLDNLITGHRKAV-----DPRARFYQGDIRDY 55
Query: 177 LLL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLT 228
L ++D I H A + +P+K N G + +L + G + + +
Sbjct: 56 HFLSQVFSQEKIDGIVHFAAFSIVPESMKDPLKYFDNNTGGMITLLEAMNQFGIKKIVFS 115
Query: 229 STSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
ST+ YG+P Q P KET +P + Y E K E + G++ R FN
Sbjct: 116 STAATYGEPKQVPIKET-----DPQVPTNPYGESKLAMEKIMHWADVAYGLKFVALRYFN 170
Query: 289 TYG--PRMCI-DDGRVVSNFVAQALR-----KEPLTVYGDGKQTRSFQFVSDLVRLTE 338
G P I +D ++ V L+ + L +YGD T+ V D V + +
Sbjct: 171 VAGAMPDGSIGEDHHPETHIVPIILQVAAGTRTGLQIYGDDYPTKDGTNVRDYVHVVD 228
>sp|Q7N3Q7|ARNA_PHOLL Bifunctional polymyxin resistance protein ArnA OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=arnA PE=3
SV=1
Length = 660
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 107/241 (44%), Gaps = 23/241 (9%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFELIRHDV---- 173
R+++ G GF+G+HL +RL+ G+ I + + E + NP F I D+
Sbjct: 317 RVLILGVNGFIGNHLTERLLRDGNYDIYGMDIGSSAIERFI---SNPRFHFIEGDINIHT 373
Query: 174 --VEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 231
+E + + D + L A+P+ Y NP++ + + L ++ + R + STS
Sbjct: 374 EWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRIIFPSTS 433
Query: 232 EVYG--DPLQHPQKETYWGNVNPIG-VRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 288
EVYG D + + ++ V PI R Y K+ + + Y G++ + R FN
Sbjct: 434 EVYGMCDDKEFDEDDSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLKFTLFRPFN 492
Query: 289 TYGPRMC------IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD----LVRLTE 338
GPR+ I R ++ + + P+ + G+Q R F ++D L R+ E
Sbjct: 493 WMGPRLDNLNSARIGSSRAITQLILNLVEGSPIKLVDGGEQKRCFTDINDGIEALFRIIE 552
Query: 339 T 339
Sbjct: 553 N 553
>sp|A6QLW2|TGDS_BOVIN dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TGDS PE=2 SV=1
Length = 355
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 105/234 (44%), Gaps = 18/234 (7%)
Query: 118 RIVVTGGAGFVGSHLVDRLIARGDSVIVV--DNF-FTGRKENVMHHFGNPNFELIRHDVV 174
R++VTGGAGF+ SH++ L+ + +++ D + +N+ N++ I+ D+
Sbjct: 19 RVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQGDIC 78
Query: 175 EP----LLLEVDQIYHLACPASPVHYKFNPVKTIK---TNVVGTLNMLGLAKRVGA-RFL 226
+ LL E ++I + A+ H + V+ + NV GT ++ A +F+
Sbjct: 79 DSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAHEARVEKFI 138
Query: 227 LTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARI 286
ST EVYG L E+ +P + Y K AE Y V I R
Sbjct: 139 YVSTDEVYGGSLDKEFDES-----SPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRS 193
Query: 287 FNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVRLTETI 340
N YGP + +V+ F++ ++G G QTR+F + +D+V T+
Sbjct: 194 SNVYGPHQYPE--KVIPKFISLLQHNRKCCIHGTGLQTRNFLYATDVVEAFLTV 245
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,971,906
Number of Sequences: 539616
Number of extensions: 5963560
Number of successful extensions: 13602
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 150
Number of HSP's that attempted gapping in prelim test: 12765
Number of HSP's gapped (non-prelim): 601
length of query: 340
length of database: 191,569,459
effective HSP length: 118
effective length of query: 222
effective length of database: 127,894,771
effective search space: 28392639162
effective search space used: 28392639162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)