BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019471
         (340 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3VR8|C Chain C, Mitochondrial Rhodoquinol-Fumarate Reductase From The
           Parasitic Nematode Ascaris Suum
 pdb|3VR8|G Chain G, Mitochondrial Rhodoquinol-Fumarate Reductase From The
           Parasitic Nematode Ascaris Suum
 pdb|3VRB|C Chain C, Mitochondrial Rhodoquinol-Fumarate Reductase From The
           Parasitic Nematode Ascaris Suum With The Specific
           Inhibitor Flutolanil And Substrate Fumarate
 pdb|3VRB|G Chain G, Mitochondrial Rhodoquinol-Fumarate Reductase From The
           Parasitic Nematode Ascaris Suum With The Specific
           Inhibitor Flutolanil And Substrate Fumarate
          Length = 188

 Score = 31.6 bits (70), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 70  HVTSYKPKVEWKDDGFEEVLYTVGGADSGAKARGGIGLAI 109
           H+T YKP++ W   G   V    G A +G    GG+G ++
Sbjct: 59  HLTIYKPQMTWMVSGLHRV---TGCAMAGTLLIGGVGFSV 95


>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
 pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
 pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
           Complex With Diguanosine Pentaphosphate
 pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
           Complex With Diguanosine Pentaphosphate
          Length = 246

 Score = 31.2 bits (69), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 238 DVPITVLKDKLSRVYAAPPAERSKAFYYTPP 268
           ++P   LKD+LSR +  PP+ R     + PP
Sbjct: 135 NIPFETLKDRLSRRWIHPPSGRVYNLDFNPP 165


>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
 pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
          Length = 231

 Score = 30.8 bits (68), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 238 DVPITVLKDKLSRVYAAPPAERSKAFYYTPP 268
           ++P   LKD+LSR +  PP+ R     + PP
Sbjct: 113 NIPFETLKDRLSRRWIHPPSGRVYNLDFNPP 143


>pdb|2PJU|A Chain A, Crystal Structure Of Propionate Catabolism Operon
           Regulatory Protein Prpr
 pdb|2PJU|B Chain B, Crystal Structure Of Propionate Catabolism Operon
           Regulatory Protein Prpr
 pdb|2PJU|C Chain C, Crystal Structure Of Propionate Catabolism Operon
           Regulatory Protein Prpr
 pdb|2PJU|D Chain D, Crystal Structure Of Propionate Catabolism Operon
           Regulatory Protein Prpr
          Length = 225

 Score = 29.3 bits (64), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 97  SGAKARGGIGLAINDASEAGSKGSLISSSQWTVKDVDSDTIDALQVEL-----SCTSGAL 151
           +G +A  G GL  + A EAG  G  I S+  TV+   SD +D  ++ L       T  AL
Sbjct: 153 NGTEAVVGAGLITDLAEEAGMTGIFIYSAA-TVRQAFSDALDMTRMSLRHNTHDATRNAL 211

Query: 152 DITYVV 157
              YV+
Sbjct: 212 RTRYVL 217


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.135    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,681,992
Number of Sequences: 62578
Number of extensions: 388018
Number of successful extensions: 849
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 847
Number of HSP's gapped (non-prelim): 7
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)