BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019471
(340 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q40784|AAPC_CENCI Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2
SV=1
Length = 329
Score = 39.7 bits (91), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 264 YYTPPSKFETLDQGRELFFRIIRIGFEDIYLGSPGSFSEKYGKDY-------FICTGPAA 316
Y PSK +D ++ F + + G D + +P K +D+ +C PAA
Sbjct: 231 YLAAPSKIAIIDHEKKKTFVVTKEGLPDAVVWNPWDKKAKAMQDFGDAEYKNMLCVEPAA 290
Query: 317 MLVPVVVQAGEKWKG 331
+ P+ ++ GE+W+G
Sbjct: 291 VEKPITLKPGEEWRG 305
>sp|Q8NCN4|RN169_HUMAN E3 ubiquitin-protein ligase RNF169 OS=Homo sapiens GN=RNF169 PE=1
SV=2
Length = 708
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 13/158 (8%)
Query: 15 IKASSASAATTVVIPENLDEKFGRKGIKFSESNNIPIVELTVR-NGSSVRLSIPDAHVTS 73
IK + + A T + PE +E G +GI S+ P+V + R +G V ++
Sbjct: 443 IKKTLSKATLTSLAPEMGEELLGSEGIHSSKEK--PLVAVNTRLSGGQV--------LSE 492
Query: 74 YKPKVEWKDDGFEEVLYTVGGADSGAKARGGIGLAINDASEAGSKGSLISSSQWTVKDVD 133
Y D F V T DS K+ I L +SE GS S + + +
Sbjct: 493 YTGPTSADLDHFPSVSQTKAEQDSDNKSSTEIPLETCCSSELKGGGSGTSLEREQFEGLG 552
Query: 134 SDTIDALQVELSCTSGALDITYVVSLYPLSMATAVIVK 171
S T DA +++ +C S A+ IT V S+ P + ++K
Sbjct: 553 S-TPDA-KLDKTCISRAMKITTVNSVLPQNSVLGGVLK 588
>sp|Q9M1D1|BGL27_ARATH Beta-glucosidase 27 OS=Arabidopsis thaliana GN=BGLU27 PE=2 SV=2
Length = 540
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 34/71 (47%)
Query: 86 EEVLYTVGGADSGAKARGGIGLAINDASEAGSKGSLISSSQWTVKDVDSDTIDALQVELS 145
E +Y++GG D+G KA G +N+A+ AG G + + + ++ ++ +
Sbjct: 182 EPWVYSIGGYDTGRKAPGRASKYMNEAAVAGESGLEVYTVSHNLLLAHAEAVEVFRNNPK 241
Query: 146 CTSGALDITYV 156
C G + I +
Sbjct: 242 CKDGKIGIAHC 252
>sp|Q30PH2|END4_SULDN Probable endonuclease 4 OS=Sulfurimonas denitrificans (strain ATCC
33889 / DSM 1251) GN=nfo PE=3 SV=1
Length = 281
Score = 31.6 bits (70), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 101 ARGGIGLAINDASEAGSKGSLI---SSSQWTVKDVDSDTIDALQVEL 144
A GG+ A+ +A + G+K + + QW+ K+ DS+TID + L
Sbjct: 11 ASGGVFNAVENAQKIGAKAFALFTKNQRQWSAKEFDSETIDKFKTAL 57
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,364,351
Number of Sequences: 539616
Number of extensions: 5433056
Number of successful extensions: 12674
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 12672
Number of HSP's gapped (non-prelim): 10
length of query: 340
length of database: 191,569,459
effective HSP length: 118
effective length of query: 222
effective length of database: 127,894,771
effective search space: 28392639162
effective search space used: 28392639162
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)