Query 019471
Match_columns 340
No_of_seqs 196 out of 1335
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 09:44:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019471.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019471hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1594 Uncharacterized enzyme 100.0 1.9E-61 4.2E-66 432.5 27.2 262 40-338 13-297 (305)
2 cd09020 D-hex-6-P-epi_like D-h 100.0 1.5E-55 3.2E-60 412.6 28.6 246 52-336 2-269 (269)
3 COG0676 Uncharacterized enzyme 100.0 9.6E-49 2.1E-53 356.6 23.1 254 41-339 16-286 (287)
4 cd09025 Aldose_epim_Slr1438 Al 100.0 1.1E-40 2.4E-45 312.5 26.0 236 50-335 2-270 (271)
5 cd09024 Aldose_epim_lacX Aldos 100.0 6.4E-34 1.4E-38 268.8 27.5 243 52-337 1-288 (288)
6 cd09021 Aldose_epim_Ec_YphB al 100.0 9.9E-34 2.1E-38 265.4 23.8 232 63-336 4-273 (273)
7 PF01263 Aldose_epim: Aldose 1 100.0 5.4E-32 1.2E-36 255.8 21.2 255 50-336 1-300 (300)
8 cd01081 Aldose_epim aldose 1-e 100.0 5.4E-30 1.2E-34 239.5 25.9 242 61-333 2-283 (284)
9 cd09022 Aldose_epim_Ec_YihR Al 100.0 2.6E-27 5.7E-32 223.2 28.5 245 60-335 1-284 (284)
10 PRK15172 putative aldose-1-epi 100.0 5.8E-26 1.3E-30 215.8 29.7 252 48-338 9-298 (300)
11 COG2017 GalM Galactose mutarot 99.9 1.4E-24 3E-29 206.9 25.9 256 47-338 8-306 (308)
12 cd09019 galactose_mutarotase_l 99.9 1.4E-22 3.1E-27 194.8 27.4 260 52-336 2-325 (326)
13 PLN00194 aldose 1-epimerase; P 99.9 6E-19 1.3E-23 170.3 29.1 268 50-337 10-335 (337)
14 TIGR02636 galM_Leloir galactos 99.8 1.8E-17 3.9E-22 160.0 27.0 265 49-336 4-333 (335)
15 cd09023 Aldose_epim_Ec_c4013 A 99.7 1.7E-16 3.7E-21 149.8 18.2 236 63-333 3-283 (284)
16 PRK11055 galM galactose-1-epim 99.7 6.8E-15 1.5E-19 142.3 28.4 263 49-336 9-338 (342)
17 PTZ00485 aldolase 1-epimerase; 99.6 3.6E-12 7.9E-17 124.3 28.1 275 40-332 4-363 (376)
18 PF14486 DUF4432: Domain of un 99.0 3.5E-08 7.7E-13 94.0 19.8 256 47-337 2-302 (302)
19 KOG1604 Predicted mutarotase [ 98.9 2.4E-06 5.3E-11 80.7 25.1 267 46-335 17-347 (353)
20 cd09269 deoxyribose_mutarotase 98.8 3.5E-07 7.5E-12 86.8 18.7 73 117-190 63-146 (293)
21 PF14315 DUF4380: Domain of un 96.4 0.14 3E-06 48.3 14.7 129 49-189 4-151 (274)
22 TIGR03593 yidC_nterm membrane 89.5 13 0.00028 36.2 14.7 118 49-180 73-204 (366)
23 PF14849 YidC_periplas: YidC p 86.4 7.1 0.00015 36.1 10.3 119 52-182 2-133 (270)
24 COG0832 UreB Urea amidohydrola 85.0 1.1 2.4E-05 35.4 3.4 31 156-188 12-42 (106)
25 PRK01318 membrane protein inse 83.4 25 0.00054 36.3 13.4 122 51-181 40-171 (521)
26 PRK13203 ureB urease subunit b 81.3 2 4.2E-05 34.2 3.4 30 157-188 13-42 (102)
27 TIGR00192 urease_beta urease, 81.2 2 4.3E-05 34.1 3.5 30 157-188 13-42 (101)
28 cd00407 Urease_beta Urease bet 81.1 2 4.3E-05 34.1 3.4 30 157-188 13-42 (101)
29 PF00699 Urease_beta: Urease b 80.3 1.7 3.7E-05 34.4 2.8 31 157-189 12-42 (100)
30 PRK13202 ureB urease subunit b 77.5 3.1 6.7E-05 33.2 3.5 30 157-188 13-43 (104)
31 PRK13201 ureB urease subunit b 76.9 3 6.6E-05 34.7 3.4 29 157-185 13-41 (136)
32 PRK13198 ureB urease subunit b 75.1 3.5 7.6E-05 35.1 3.4 29 157-185 41-69 (158)
33 PRK13205 ureB urease subunit b 75.0 3.5 7.7E-05 35.1 3.4 30 157-188 13-42 (162)
34 PRK13204 ureB urease subunit b 74.9 3.6 7.8E-05 35.1 3.4 29 157-185 36-64 (159)
35 PRK13192 bifunctional urease s 64.2 7.3 0.00016 34.9 3.2 30 157-188 122-151 (208)
36 PRK13986 urease subunit alpha; 61.9 8.1 0.00017 35.0 3.1 30 157-188 118-147 (225)
37 PF05506 DUF756: Domain of unk 55.7 27 0.00059 26.7 4.8 38 148-187 6-43 (89)
38 PF04744 Monooxygenase_B: Mono 50.5 18 0.00039 35.4 3.6 27 156-182 257-283 (381)
39 PF12690 BsuPI: Intracellular 46.7 25 0.00055 26.7 3.3 20 163-182 1-20 (82)
40 TIGR03079 CH4_NH3mon_ox_B meth 45.5 24 0.00051 34.6 3.6 33 150-182 267-302 (399)
41 PF14742 GDE_N_bis: N-terminal 39.3 2.1E+02 0.0046 25.2 8.6 37 148-185 78-114 (194)
42 PF06030 DUF916: Bacterial pro 32.1 1E+02 0.0022 25.2 4.9 29 161-189 26-54 (121)
43 KOG3150 Uncharacterized conser 28.0 61 0.0013 28.0 2.9 45 281-326 18-85 (182)
44 PF14796 AP3B1_C: Clathrin-ada 27.8 1.2E+02 0.0027 25.7 4.8 58 269-336 56-139 (145)
45 TIGR01451 B_ant_repeat conserv 27.0 77 0.0017 21.8 2.9 18 161-178 11-28 (53)
46 KOG2635 Medium subunit of clat 26.3 1.4E+02 0.003 30.2 5.4 32 125-159 365-400 (512)
47 PF00345 PapD_N: Pili and flag 25.8 1.3E+02 0.0029 24.0 4.6 28 157-184 9-36 (122)
48 PLN02303 urease 24.7 68 0.0015 35.0 3.3 30 157-186 143-172 (837)
49 cd06536 CIDE_N_ICAD CIDE_N dom 24.1 33 0.00071 26.2 0.6 22 307-330 58-79 (80)
50 PF09095 DUF1926: Domain of un 23.9 2.5E+02 0.0054 26.4 6.6 61 124-189 123-185 (278)
51 PF06165 Glyco_transf_36: Glyc 23.4 2.2E+02 0.0047 22.6 5.3 35 153-189 54-88 (110)
52 PF01345 DUF11: Domain of unkn 23.1 97 0.0021 22.5 3.0 18 161-178 40-57 (76)
53 PF14310 Fn3-like: Fibronectin 23.1 55 0.0012 23.8 1.6 17 321-337 27-43 (71)
54 cd06539 CIDE_N_A CIDE_N domain 21.2 42 0.00091 25.5 0.7 22 307-330 56-77 (78)
No 1
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-61 Score=432.46 Aligned_cols=262 Identities=18% Similarity=0.326 Sum_probs=227.9
Q ss_pred ceEEee-eCCeeEEEEEeCCCCEEEEecCCeEEEEecccccccCCCceEEEEecCC--CCCCCCccceeeeeeeecCCCC
Q 019471 40 GIKFSE-SNNIPIVELTVRNGSSVRLSIPDAHVTSYKPKVEWKDDGFEEVLYTVGG--ADSGAKARGGIGLAINDASEAG 116 (340)
Q Consensus 40 g~~~~~-~~g~~~v~l~~~~g~~a~I~~~GA~v~S~~~~~~w~~~~g~e~L~~~~~--~~~~~~irGGiPvlfP~fg~~g 116 (340)
++.... .+|++.|.|++++|++|+|+++||+|+| |+...|+|+||++.. +++.+|||||||+|||+||+-|
T Consensus 13 ~~~~~k~~~g~~~ivL~~p~g~taev~L~Gg~V~S------WK~~~geElLf~S~kA~f~ppKpIRGGIP~~FPQFG~~g 86 (305)
T KOG1594|consen 13 PVELAKGRNGLDKIVLTDPRGSTAEVYLYGGQVVS------WKNENGEELLFVSTKAIFKPPKPIRGGIPICFPQFGNFG 86 (305)
T ss_pred cceeecccCCCceEEEeCCCCCeEEEEEeccEEEE------eecCCCceeEEechhhhcCCCCcccCCcceEeeccCCCC
Confidence 344444 7999999999999999999999999999 556789999999887 9999999999999999999866
Q ss_pred --CCCccccCCCeEEEEEcCCCC----CeEEEEE-------cccCCceEEEEEEEEeCCceEEEEEEEECCCcceeeeee
Q 019471 117 --SKGSLISSSQWTVKDVDSDTI----DALQVEL-------SCTSGALDITYVVSLYPLSMATAVIVKNNGRKAVTLTSA 183 (340)
Q Consensus 117 --~~HGfar~~~W~v~~~~~~~~----~~v~~~L-------~~~p~~f~l~~~~tL~~~~L~~~l~v~N~g~~~~~f~~g 183 (340)
++|||||++.|++++...... ..|.+.| +.|||+|+++|++.|.++.|+++.+|+|++++|+.|+++
T Consensus 87 ~l~qHGFaRn~~W~v~~~p~~lp~~~~a~Vdl~Lk~~~~~~kiWp~~Fe~~lrv~l~~g~Lt~~~rV~Ntd~KpFsF~~a 166 (305)
T KOG1594|consen 87 SLPQHGFARNRFWEVENNPPPLPSLGKATVDLILKSSEDDLKIWPHSFELRLRVSLGDGELTLTSRVRNTDSKPFSFSFA 166 (305)
T ss_pred cccccccccceeeEeccCCCCCCcCCceeEEEEecCChhhhhhCCcceEEEEEEEEcCCceEEEEEeecCCCCceEEEeE
Confidence 999999999999987533211 2466666 479999999999999999999999999999999999999
Q ss_pred ccceEecCCCCceEEecCCCCceecCCCCCCCCccCCcccccccccccccceeeccCeeeeccccceeecCCCccccccc
Q 019471 184 ILSHLLFKRRNGTGIRGLKGCSYCKHPPLSSPFELLPPSEAMKNDEKQGIWNVQDVPITVLKDKLSRVYAAPPAERSKAF 263 (340)
Q Consensus 184 ~Hpyf~v~~~~~~~v~gl~g~~y~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Drvy~~~~~~~~d~~ 263 (340)
+|+||+|+|+..++++||++++|+|+.....+ ..++.++++|.+++||||.+
T Consensus 167 lHtYf~vsdisevrveGL~tldylD~~~~~~~-------------------~tE~~davTF~~e~DrvYl~--------- 218 (305)
T KOG1594|consen 167 LHTYFRVSDISEVRVEGLETLDYLDNLKNRER-------------------FTEQRDAVTFNSEVDRVYLN--------- 218 (305)
T ss_pred eeeeEeecccceEEEeccccccccccccchhh-------------------ccccCceEeeccceeeEEec---------
Confidence 99999999999999999999999987642111 12335778999999999975
Q ss_pred ccCCCCeEEEEeCCCCeEEEEEEcCCceEEEeCCCC-----CCCCCCC--CeEEEecCcccCCCEEeCCCCEEEEEEEEE
Q 019471 264 YYTPPSKFETLDQGRELFFRIIRIGFEDIYLGSPGS-----FSEKYGK--DYFICTGPAAMLVPVVVQAGEKWKGAQVIE 336 (340)
Q Consensus 264 ~~~~~~~~~l~d~~~~~~i~v~~~gf~~~vvWnP~~-----~~d~~~~--~~fvCvEP~~~~~~v~L~PGe~~~~~~~I~ 336 (340)
.|.++.|.|..++++|.+.+.|++++||||||. |+|+.+. +.|+|||++++.+|+.|+||++|++.|.+.
T Consensus 219 ---tp~e~aI~dh~~krti~l~k~g~pDaVVWNPW~kksk~maD~gde~Y~~mlCVe~a~v~~pI~L~PG~eW~g~q~Ls 295 (305)
T KOG1594|consen 219 ---TPTELAIFDHEKKRTIVLKKEGLPDAVVWNPWDKKSKTMADFGDEDYKHMLCVESAAVESPITLKPGEEWKGRQLLS 295 (305)
T ss_pred ---CCceEEEEEeccccEEEEeccCCCceEEeChhHhhhhhhhhccccccceeEEecccccCCceeecCCccceeEEEEE
Confidence 667799999999999999999999999999994 7886533 359999999999999999999999999887
Q ss_pred ee
Q 019471 337 HD 338 (340)
Q Consensus 337 ~~ 338 (340)
+.
T Consensus 296 iv 297 (305)
T KOG1594|consen 296 IV 297 (305)
T ss_pred Ee
Confidence 64
No 2
>cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.
Probab=100.00 E-value=1.5e-55 Score=412.57 Aligned_cols=246 Identities=20% Similarity=0.289 Sum_probs=209.1
Q ss_pred EEEEeCCCCEEEEecCCeEEEEecccccccCCCceEEEEecCC--CCCCCCccceeeeeeeecCCC----C-CCCccccC
Q 019471 52 VELTVRNGSSVRLSIPDAHVTSYKPKVEWKDDGFEEVLYTVGG--ADSGAKARGGIGLAINDASEA----G-SKGSLISS 124 (340)
Q Consensus 52 v~l~~~~g~~a~I~~~GA~v~S~~~~~~w~~~~g~e~L~~~~~--~~~~~~irGGiPvlfP~fg~~----g-~~HGfar~ 124 (340)
++|+++ +++|+|.++||+|+||+ .++++|+||+++. |++++++|||+||||||||+. . ++|||||+
T Consensus 2 i~i~~~-~~~a~i~~~Ga~l~s~~------~~~~~~~L~~s~~~~~~~~~~irgGiPvlfP~~g~~~~~~~~~~HGfaR~ 74 (269)
T cd09020 2 IVLDHP-GASAEIALQGAQVLSWK------PKGGQDLLWLSPQAPFDGGKAIRGGIPVCWPWFGPHGPNADLPAHGFART 74 (269)
T ss_pred EEEeCC-CceEEEECCCcEEEEEe------CCCCceeEEECCccccCCCCcccCCCeEeeeccCCCCCCCCCCcceeeec
Confidence 678885 68999999999999965 4567999999886 999999999999999999973 2 89999999
Q ss_pred CCeEEEEEcCCCC-CeEEEEEc-------ccCCceEEEEEEEEeCCceEEEEEEEECCCcceeeeeeccceEecCCCCce
Q 019471 125 SQWTVKDVDSDTI-DALQVELS-------CTSGALDITYVVSLYPLSMATAVIVKNNGRKAVTLTSAILSHLLFKRRNGT 196 (340)
Q Consensus 125 ~~W~v~~~~~~~~-~~v~~~L~-------~~p~~f~l~~~~tL~~~~L~~~l~v~N~g~~~~~f~~g~Hpyf~v~~~~~~ 196 (340)
+.|+|.+.+.+.+ ..++++|. .|||+|+++++|+|.+++|+++++|+|+|+++|||++|+||||++++++++
T Consensus 75 ~~W~l~~~~~~~~~~~l~l~l~~~~~~~~~~P~~f~l~~~~~L~~~~L~~~l~v~N~g~~~~p~~~g~HpYf~v~d~~~~ 154 (269)
T cd09020 75 RLWELLEVSEDEDGVTVSLELDDTDETRAIWPHAFELRLTVTLGFDTLELELTVTNTGDKPFSFTAALHTYFRVSDIEQV 154 (269)
T ss_pred CceEEeeeecCCCceEEEEEeCCChhhhhcCCCceEEEEEEEEcCCcEEEEEEEECCCCCCeEehhccCeeEecCCcccc
Confidence 9999998765412 14445442 589999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCceecCCCCCCCCccCCcccccccccccccceeeccCeeeeccccceeecCCCcccccccccCCCCeEEEEeC
Q 019471 197 GIRGLKGCSYCKHPPLSSPFELLPPSEAMKNDEKQGIWNVQDVPITVLKDKLSRVYAAPPAERSKAFYYTPPSKFETLDQ 276 (340)
Q Consensus 197 ~v~gl~g~~y~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Drvy~~~~~~~~d~~~~~~~~~~~l~d~ 276 (340)
++.|+.++.|+|+..... .....+.+.+.+++||||.+ .+..++|.|.
T Consensus 155 ~v~gl~~~~y~d~~~~~~--------------------~~~~~~~~~~~~~~Drvy~~------------~~~~~~i~d~ 202 (269)
T cd09020 155 RVEGLEGATYLDKLTDQR--------------------EKVQGGAVTFDGEVDRVYLN------------TPAPLTIDDP 202 (269)
T ss_pred EEeCCCCCceEEcCCCcc--------------------ccccCCceEECCccceEEeC------------CCCCEEEEcC
Confidence 999999999999874110 01112446778899999974 4456899999
Q ss_pred CCCeEEEEEEcCCceEEEeCCCC-----CCCCCC--CCeEEEecCcccCCCEEeCCCCEEEEEEEEE
Q 019471 277 GRELFFRIIRIGFEDIYLGSPGS-----FSEKYG--KDYFICTGPAAMLVPVVVQAGEKWKGAQVIE 336 (340)
Q Consensus 277 ~~~~~i~v~~~gf~~~vvWnP~~-----~~d~~~--~~~fvCvEP~~~~~~v~L~PGe~~~~~~~I~ 336 (340)
+.+++|+|++++++++||||||. |+|+.. ++.|||||||++..++.|+|||+|+++++|.
T Consensus 203 ~~~~~i~i~~~~~~~~VVWNP~~~~~~~~~d~~~~~~~~fvCvEp~~~~~~~~L~pG~~~~~~~~i~ 269 (269)
T cd09020 203 AWGRRIRIEKSGSPSAVVWNPWIEKAARMADFPDDGYRRMVCVEAANVADPVTLAPGESHTLSQTIS 269 (269)
T ss_pred CCCcEEEEEecCCCCEEEeCcchhhccccccCCccccceEEEECeeecCCCEEECCCCCEEEEEEEC
Confidence 99999999999999999999996 777763 4569999999877889999999999999984
No 3
>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.6e-49 Score=356.63 Aligned_cols=254 Identities=16% Similarity=0.234 Sum_probs=207.6
Q ss_pred eEEeeeCCeeEEEEEeCCCCEEEEecCCeEEEEecccccccCCCceEEEEecCC--CCCCCCccceeeeeeeecCCCC--
Q 019471 41 IKFSESNNIPIVELTVRNGSSVRLSIPDAHVTSYKPKVEWKDDGFEEVLYTVGG--ADSGAKARGGIGLAINDASEAG-- 116 (340)
Q Consensus 41 ~~~~~~~g~~~v~l~~~~g~~a~I~~~GA~v~S~~~~~~w~~~~g~e~L~~~~~--~~~~~~irGGiPvlfP~fg~~g-- 116 (340)
++....+.++.+.+.|+ -.+|.|+++||+|+||+ +++++|+||+|+. ++.+++|||||||||||||+..
T Consensus 16 ~~~~~~~~~~~~~~~h~-~~~a~islqGAqLLs~q------P~ge~evLWLS~~~p~~~g~aIRGGIPICwPWFG~~~~~ 88 (287)
T COG0676 16 LSLVKLDQLPLIVVDHP-LGSAAISLQGAQLLSWQ------PKGEEEVLWLSSNAPFKGGAAIRGGIPICWPWFGPLAQQ 88 (287)
T ss_pred ceeEeeeccCceEeecc-cceeEEecCCceEEEec------CCCCCceEEecccCccCCCCcccCCCcEEEeccCccCCC
Confidence 45555788899999996 47999999999999955 6788899999987 9999999999999999999842
Q ss_pred --CCCccccCCCeEEEEEcCCCCC-eEEEEEcc--cCCceEEEEEEEEeCCceEEEEEEEECCCcceeeeeeccceEecC
Q 019471 117 --SKGSLISSSQWTVKDVDSDTID-ALQVELSC--TSGALDITYVVSLYPLSMATAVIVKNNGRKAVTLTSAILSHLLFK 191 (340)
Q Consensus 117 --~~HGfar~~~W~v~~~~~~~~~-~v~~~L~~--~p~~f~l~~~~tL~~~~L~~~l~v~N~g~~~~~f~~g~Hpyf~v~ 191 (340)
|+|||||+++|++.++.++..+ .+++.|.. -|+.|++++++.++ +.|++++++.|..+ |+.|+||||+|+
T Consensus 89 ~~PaHG~AR~~~W~l~~~~~~~~~v~v~f~L~~~~~p~~~~lr~~~~~g-~~le~~l~~~~~~s----~~~AlHtYF~Vg 163 (287)
T COG0676 89 GLPAHGFARNRPWKLLEHDEDEDGVRVTFGLDLEDEPHDFTLRLTFRFG-ETLELELESYGEES----FQAALHTYFRVG 163 (287)
T ss_pred CCCccchhhcCceeeeehhcccCceEEEEEeCCCccccceEEEEEeecc-ceEEEEEEecChhH----HHHhhcceEEec
Confidence 9999999999999999877444 45555533 36889999999997 68999999999887 999999999999
Q ss_pred CCCceEEecCCCCceecCCCCCCCCccCCcccccccccccccceeeccCeeeeccccceeecCCCcccccccccCCCCeE
Q 019471 192 RRNGTGIRGLKGCSYCKHPPLSSPFELLPPSEAMKNDEKQGIWNVQDVPITVLKDKLSRVYAAPPAERSKAFYYTPPSKF 271 (340)
Q Consensus 192 ~~~~~~v~gl~g~~y~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Drvy~~~~~~~~d~~~~~~~~~~ 271 (340)
|++++.|+||.+..|.+.... .+ .....+...+++++||||++ .....
T Consensus 164 Di~qv~V~GL~~~~~~~~~~~--------------~~------~v~~~g~~~~~~~~DriY~~------------~~~~~ 211 (287)
T COG0676 164 DIEQVEVSGLGGVCIDKVLNA--------------EE------EVTQHGIVTFPGETDRIYLN------------PEPCS 211 (287)
T ss_pred chhheEeccCCceehhhhhhc--------------ee------eccCCCceeeCCCccEEEEc------------CCCce
Confidence 999999999987655433320 00 11223456889999999985 33458
Q ss_pred EEEeCCCCeEEEEEEcCCceEEEeCCCC-----CCCCC--CCCeEEEecCcccCCC-EEeCCCCEEEEEEEEEeec
Q 019471 272 ETLDQGRELFFRIIRIGFEDIYLGSPGS-----FSEKY--GKDYFICTGPAAMLVP-VVVQAGEKWKGAQVIEHDN 339 (340)
Q Consensus 272 ~l~d~~~~~~i~v~~~gf~~~vvWnP~~-----~~d~~--~~~~fvCvEP~~~~~~-v~L~PGe~~~~~~~I~~~~ 339 (340)
.|.|++.+|+|+++..+..++||||||. |+|++ +++.|+||||+.+... ..++|+ .++..++|.+..
T Consensus 212 ~I~D~~~~R~I~l~~~~~~~~VvWNP~~~~s~~M~d~~d~gyq~mlCvEta~~~~~l~~~~~~-~~~l~~~i~~~~ 286 (287)
T COG0676 212 VIVDPALNRIITLEHQGHSSTVVWNPGHAKSSSMADMPDDGYQTMLCVETARVGPDLKVGEPG-PVRLALKISVAK 286 (287)
T ss_pred EEecCcceEEEEEEecCCCCeEEECCCccccccccccccccceEEEEEeecccCcchhhcCCc-ceeeeeeeeccc
Confidence 8999999999999999999999999995 88875 4456999999977665 566666 777888888753
No 4
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438. Proteins similar to Synechocystis Slr1438 are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=1.1e-40 Score=312.45 Aligned_cols=236 Identities=16% Similarity=0.198 Sum_probs=188.5
Q ss_pred eEEEEEeC-CCCEEEEe-cCCeEEEEecccccccCCCceEEEEecCC--CCCCCCccceeeeeeeecCCC--------C-
Q 019471 50 PIVELTVR-NGSSVRLS-IPDAHVTSYKPKVEWKDDGFEEVLYTVGG--ADSGAKARGGIGLAINDASEA--------G- 116 (340)
Q Consensus 50 ~~v~l~~~-~g~~a~I~-~~GA~v~S~~~~~~w~~~~g~e~L~~~~~--~~~~~~irGGiPvlfP~fg~~--------g- 116 (340)
+.++|+++ ++.+++|. .+||+|+||+ . .|+|+||+++. ++.++++|||+|+|||++|+- |
T Consensus 2 ~~~~l~~~~~~~~~~v~p~~Ga~l~s~~------~-~g~~~l~~~~~~~~~~~~~~~gG~p~l~P~~gri~~g~~~~~g~ 74 (271)
T cd09025 2 PTYELSDEEAGSRLRVVPERGGLITRWT------V-QGRELLYLDEERFADPAKSVRGGIPILFPICGNLPDDGYPLAGQ 74 (271)
T ss_pred cEEEEEcCCCceEEEEecccCCEEEEEe------c-CCEEEEecCChHHhccccccCCCCcEEECccCCCCCCeEEECCE
Confidence 57888886 34677776 6899999965 3 35899999887 888889999999999999972 2
Q ss_pred ----CCCccccCCCeEEEEEcCCCCCeEEEEEc-------ccCCceEEEEEEEEeCCceEEEEEEEECCCcceeeeeecc
Q 019471 117 ----SKGSLISSSQWTVKDVDSDTIDALQVELS-------CTSGALDITYVVSLYPLSMATAVIVKNNGRKAVTLTSAIL 185 (340)
Q Consensus 117 ----~~HGfar~~~W~v~~~~~~~~~~v~~~L~-------~~p~~f~l~~~~tL~~~~L~~~l~v~N~g~~~~~f~~g~H 185 (340)
++|||+|++.|+|.+.. + ...+++++. .|||+|+++++|+|.+++|+++++|+|+|+++|||++|+|
T Consensus 75 ~~~lp~HGf~r~~~W~v~~~~-~-~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~H 152 (271)
T cd09025 75 EYTLKQHGFARDLPWEVELLG-D-GAGLTLTLRDNEATRAVYPFDFELELTYRLAGNTLEIAQRVHNLGDQPMPFSFGFH 152 (271)
T ss_pred EEeccCcccccCCCEEEEecC-C-CcEEEEEEeCCHHHHhhCCceEEEEEEEEEeCCEEEEEEEEEECCCCcEEEEEecC
Confidence 79999999999998865 1 236777773 4899999999999999999999999999999999999999
Q ss_pred ceEecCCCCceEEecCCCCceecCCCCCCCCccCCcccccccccccccceeeccCeeeeccccceeecCCCccccccccc
Q 019471 186 SHLLFKRRNGTGIRGLKGCSYCKHPPLSSPFELLPPSEAMKNDEKQGIWNVQDVPITVLKDKLSRVYAAPPAERSKAFYY 265 (340)
Q Consensus 186 pyf~v~~~~~~~v~gl~g~~y~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Drvy~~~~~~~~d~~~~ 265 (340)
|||++++.+++.+.++ +..|+++.+.. +.+ .+ ........++||+|..
T Consensus 153 pYF~~~~~~~~~l~~~-~~~~~~~~~~~-----~~~--------------~~-~~~~~~~~~~D~~y~~----------- 200 (271)
T cd09025 153 PYFAVPDKAKLSLDLP-PTRCFDQKTDE-----EAN--------------TP-GQFDETEEGVDLLFRP----------- 200 (271)
T ss_pred ceeeCCchhccEEEcC-HHHHhhhccCC-----ccC--------------Cc-ccccccccccchhhcc-----------
Confidence 9999999889999887 46777665310 000 01 1223346678999963
Q ss_pred CCCCeEEEEeCCCCeEEEEEEc-CCceEEEeCCCCCCCCCCCCeEEEecCcc-----c---CCCEEeCCCCEEEEEEEE
Q 019471 266 TPPSKFETLDQGRELFFRIIRI-GFEDIYLGSPGSFSEKYGKDYFICTGPAA-----M---LVPVVVQAGEKWKGAQVI 335 (340)
Q Consensus 266 ~~~~~~~l~d~~~~~~i~v~~~-gf~~~vvWnP~~~~d~~~~~~fvCvEP~~-----~---~~~v~L~PGe~~~~~~~I 335 (340)
++ .++|.|++.+++|.|..+ +|+++|||||. . +.||||||+. . ...+.|+|||+|+++++|
T Consensus 201 -~~-~~~l~~~~~~~~i~l~~~~~~~~~vvw~p~------~-~~~vCvEp~t~~~nA~n~~~~~~~L~PGe~~~~~~~i 270 (271)
T cd09025 201 -LG-PASLTDGARGLKITLDHDEPFSNLVVWTDK------G-KDFVCLEPWTGPRNALNTGERLLLLPPGETEEASVRI 270 (271)
T ss_pred -CC-ceEEEecCCCEEEEEecCCCcceEEEecCC------C-CcEEEEecCCCCccccCcCCccEEECCCCEEEEEEEE
Confidence 32 588999887889999986 59999999992 2 3499999982 3 234899999999999988
No 5
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX. Proteins similar to Lactococcus lactis lacX are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=6.4e-34 Score=268.85 Aligned_cols=243 Identities=14% Similarity=0.054 Sum_probs=167.8
Q ss_pred EEEEeCCCCEEEEecCCeEEEEecccccccCCCceEEEEecCCCCCCCCccceeeeeeeecCCC--------C-----CC
Q 019471 52 VELTVRNGSSVRLSIPDAHVTSYKPKVEWKDDGFEEVLYTVGGADSGAKARGGIGLAINDASEA--------G-----SK 118 (340)
Q Consensus 52 v~l~~~~g~~a~I~~~GA~v~S~~~~~~w~~~~g~e~L~~~~~~~~~~~irGGiPvlfP~fg~~--------g-----~~ 118 (340)
++|++.+ .+|+|..+||+|+||+ .+ .+|+||||+++. ....|++|+|||++|+- | ++
T Consensus 1 ~~l~n~~-~~a~v~~~Ga~l~s~~----~~-~~g~e~l~~~~~----~~~~~~~p~l~P~~gri~~g~~~~~g~~~~l~~ 70 (288)
T cd09024 1 ITLENEF-LTVTISEHGAELTSIK----DK-KTGREYLWQGDP----AYWGRHAPILFPIVGRLKDDTYTIDGKTYPMPQ 70 (288)
T ss_pred CEEECCc-EEEEEeccCcEEEEEE----eC-CCCCEEEeCCCh----HHcCCCCCEEEeeccCCCCCeEEECCEEeeccC
Confidence 3577744 7999999999999987 22 257999998764 11345789999999972 2 79
Q ss_pred CccccCCCeEEEEEcCCCCCeEEEEEc-------ccCCceEEEEEEEEeCCceEEEEEEEECCCcceeeeeeccceEecC
Q 019471 119 GSLISSSQWTVKDVDSDTIDALQVELS-------CTSGALDITYVVSLYPLSMATAVIVKNNGRKAVTLTSAILSHLLFK 191 (340)
Q Consensus 119 HGfar~~~W~v~~~~~~~~~~v~~~L~-------~~p~~f~l~~~~tL~~~~L~~~l~v~N~g~~~~~f~~g~Hpyf~v~ 191 (340)
|||+|++.|+|.+.+++ ++++++. .|||+|+++++|+|.+++|+++++|+|+|+++|||++|+||||+++
T Consensus 71 HGf~r~~~w~v~~~~~~---~v~l~l~~~~~~~~~~P~~~~~~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF~~~ 147 (288)
T cd09024 71 HGFARDMEFEVVEQSDD---SVTFELTDNEETLKVYPFDFELRVTYTLEGNTLKVTYEVKNPDDKTMPFSIGGHPAFNCP 147 (288)
T ss_pred CCCcccCceEEEEccCC---EEEEEEccCcchhhcCCeEEEEEEEEEEeCCEEEEEEEEEcCCCCceEEEEeCCceEECC
Confidence 99999999999887654 7877773 4799999999999999999999999999999999999999999998
Q ss_pred CCC-----ceEEecCCC---CceecCCCCCCCCccCCcccccccccccccceeeccCeeeecccc--ceeecCCCccccc
Q 019471 192 RRN-----GTGIRGLKG---CSYCKHPPLSSPFELLPPSEAMKNDEKQGIWNVQDVPITVLKDKL--SRVYAAPPAERSK 261 (340)
Q Consensus 192 ~~~-----~~~v~gl~g---~~y~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Drvy~~~~~~~~d 261 (340)
+.. +..+. +.. ..++. .. ... +++... .. .. .....+.+.... |++|
T Consensus 148 ~~~~~~~~~~~l~-~~~~~~~~~~~-~~-~~~--~~~~~~--~~------~~-~~~~~~~l~~~~~~~~~~--------- 204 (288)
T cd09024 148 LDEGEKFEDYYLE-FEPKEELERIP-LV-GPL--GLLGEK--KP------LL-LNEGTLPLTHDLFDDDAL--------- 204 (288)
T ss_pred CCCCCcccceEEE-ECCcccceEEe-cC-Ccc--cccccc--cc------cc-CCCCeecCCHHHhcCCEE---------
Confidence 753 22221 111 01110 00 000 011100 00 00 001112222221 1221
Q ss_pred ccccCC-CCeEEEEeCCCCeEEEEEEcCCceEEEeCCCCCCCCCCCCeEEEecCcc-----cC---------CCEEeCCC
Q 019471 262 AFYYTP-PSKFETLDQGRELFFRIIRIGFEDIYLGSPGSFSEKYGKDYFICTGPAA-----ML---------VPVVVQAG 326 (340)
Q Consensus 262 ~~~~~~-~~~~~l~d~~~~~~i~v~~~gf~~~vvWnP~~~~d~~~~~~fvCvEP~~-----~~---------~~v~L~PG 326 (340)
++.+. .+.++|.+++.++.|+|..++|++++||+| ++..+|||||||. .+ ..+.|+||
T Consensus 205 -~~~~~~~~~~~l~~~~~~~~v~l~~~~~~~l~vwt~------~~~~~~iciEP~t~~~da~~~~~~~~~~~gl~~L~PG 277 (288)
T cd09024 205 -IFDNLKSREVTLKSKKTGHGVTVDFDDFPYLGIWSK------PNGAPFVCIEPWYGLADSVGFDGDLEDKEGINKLEPG 277 (288)
T ss_pred -EEcCCCccEEEEEcCCCCCEEEEEeCCCCEEEEeCC------CCCCCEEEEcCCCCCCCcCCCCccccccCCCEEeCCC
Confidence 11222 257899888777889999977999999998 3123499999993 11 12899999
Q ss_pred CEEEEEEEEEe
Q 019471 327 EKWKGAQVIEH 337 (340)
Q Consensus 327 e~~~~~~~I~~ 337 (340)
|+++++++|++
T Consensus 278 e~~~~~~~i~~ 288 (288)
T cd09024 278 ESFEASYSITI 288 (288)
T ss_pred CEEEEEEEEEC
Confidence 99999999974
No 6
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB. Proteins similar to Escherichia coli YphB are uncharacterized members of the aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=9.9e-34 Score=265.40 Aligned_cols=232 Identities=12% Similarity=0.072 Sum_probs=167.3
Q ss_pred EEecCCeEEEEecccccccCCCceEEEEecCC-CCCCCCccceeeeeeeecCCC--------C--------------CCC
Q 019471 63 RLSIPDAHVTSYKPKVEWKDDGFEEVLYTVGG-ADSGAKARGGIGLAINDASEA--------G--------------SKG 119 (340)
Q Consensus 63 ~I~~~GA~v~S~~~~~~w~~~~g~e~L~~~~~-~~~~~~irGGiPvlfP~fg~~--------g--------------~~H 119 (340)
.|...||+|+||+ +. +++.|+||..+. .. ++.++|+|+|||+.|+- | ++|
T Consensus 4 ~v~~~Ga~l~sl~----~~-~~~~~~l~~~~~~~~--~~~~~~~p~LfP~~gRi~~~~~~~~g~~y~l~~n~~~~~~~~H 76 (273)
T cd09021 4 LAPELGGSIAALT----SR-GDPTPLLRPADPDAA--DALAMACFPLVPFSNRIRGGRFLFAGREVALPPNTADEPHPLH 76 (273)
T ss_pred eCCCCCceEEEEE----eC-CCcceeeecCCcccc--CcccccCceEeccCCcccCCcEeECCEEEecCCCCCCCccCcc
Confidence 4567899999987 32 336999998653 21 24588999999988861 1 699
Q ss_pred ccccCCCeEEEEEcCCCCCeEEEEEc----ccCCceEEEEEEEEeCCceEEEEEEEECCCcceeeeeeccceEecCCCCc
Q 019471 120 SLISSSQWTVKDVDSDTIDALQVELS----CTSGALDITYVVSLYPLSMATAVIVKNNGRKAVTLTSAILSHLLFKRRNG 195 (340)
Q Consensus 120 Gfar~~~W~v~~~~~~~~~~v~~~L~----~~p~~f~l~~~~tL~~~~L~~~l~v~N~g~~~~~f~~g~Hpyf~v~~~~~ 195 (340)
||||++.|+|++.+++ +++++|. .+||+|+++++|+|.+++|+++++++|+++++|||++|+||||++++...
T Consensus 77 G~ar~~~w~v~~~~~~---~v~l~l~~~~~~~P~~~~~~~~y~L~~~~L~i~~~~~N~~~~~~~~~~g~H~YF~~~~~~~ 153 (273)
T cd09021 77 GDGWRRPWQVVAASAD---SAELQLDHEADDPPWAYRAEQRFHLAGDGLSITLSVTNRGDRPMPAGLGFHPYFPRTPDTR 153 (273)
T ss_pred cchhcCceEEEeccCC---eEEEEEecCCCCCCEeEEEEEEEEEcCCCEEEEEEEEECCCCCceeeeecCccEecCCCCE
Confidence 9999999999887654 7777774 35899999999999999999999999999999999999999999998666
Q ss_pred eEEecCCCCceecCCCCCCCCccCCcccccccccccccceeeccCeeeeccccceeecCCCcccccccccCCCCeEEEEe
Q 019471 196 TGIRGLKGCSYCKHPPLSSPFELLPPSEAMKNDEKQGIWNVQDVPITVLKDKLSRVYAAPPAERSKAFYYTPPSKFETLD 275 (340)
Q Consensus 196 ~~v~gl~g~~y~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Drvy~~~~~~~~d~~~~~~~~~~~l~d 275 (340)
..+.+.. ++.... +.++... .... ..+... .........+|++|.. ....+.+.+
T Consensus 154 l~v~~~~---~~~~d~-----~~lp~~~-~~~~---~~~df~-~~~~l~~~~~D~~f~~------------~~~~~~l~~ 208 (273)
T cd09021 154 LQADADG---VWLEDE-----DHLPTGL-RPHP---PDWDFS-QPRPLPDRWIDNCFTG------------WDGAALIWP 208 (273)
T ss_pred EEEecce---EEecCC-----CcCCCcc-cCCC---cchhhc-CCCcCCcccccccccC------------CCcceEEec
Confidence 7776542 331110 0121110 0000 000111 1112234567888863 223477888
Q ss_pred CCCCeEEEEEEcC-CceEEEeCCCCCCCCCCCCeEEEecCcc-c-C------C--CEEeCCCCEEEEEEEEE
Q 019471 276 QGRELFFRIIRIG-FEDIYLGSPGSFSEKYGKDYFICTGPAA-M-L------V--PVVVQAGEKWKGAQVIE 336 (340)
Q Consensus 276 ~~~~~~i~v~~~g-f~~~vvWnP~~~~d~~~~~~fvCvEP~~-~-~------~--~v~L~PGe~~~~~~~I~ 336 (340)
+..++.|+|..++ |+++|||||+ +..|||||||. . + . .+.|+|||+++.+++|+
T Consensus 209 ~~~~~~i~v~~~~~~~~~vvwtp~-------~~~~vCvEP~~~~~da~~~~~~~~~~~L~pge~~~~~~~i~ 273 (273)
T cd09021 209 PERGLALTIEADAPFSHLVVYRPP-------GEDFFCLEPVSHAPDAHHGPGDPGLRVLAPGESLSLSMRIT 273 (273)
T ss_pred CCCCcEEEEecCCCCCEEEEEcCC-------CCCeEEEccccCCCCccCCcCCCCcEEeCCCCcEEEEEEEC
Confidence 8888999999988 9999999995 23499999993 1 1 2 28999999999999884
No 7
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5.1.3.3 from EC) (mutarotase) is the enzyme responsible for the anomeric interconversion of D-glucose and other aldoses between their alpha- and beta-forms. The sequence of mutarotase from two bacteria, Acinetobacter calcoaceticus and Streptococcus thermophilus is available []. It has also been shown that, on the basis of extensive sequence similarities, a mutarotase domain seems to be present in the C-terminal half of the fungal GAL10 protein which encodes, in the N-terminal part, UDP-glucose 4-epimerase.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process; PDB: 1YGA_A 3DCD_A 2CIQ_A 2CIS_A 2CIR_A 2HTB_C 2HTA_B 3Q1N_A 1NSZ_B 1NSR_B ....
Probab=100.00 E-value=5.4e-32 Score=255.80 Aligned_cols=255 Identities=14% Similarity=0.115 Sum_probs=172.2
Q ss_pred eEEEEEeCCCCEEEEecCCeEEEEecccccccCCCceEEEEecCC----CCC--------CCCcc---c-----eeeeee
Q 019471 50 PIVELTVRNGSSVRLSIPDAHVTSYKPKVEWKDDGFEEVLYTVGG----ADS--------GAKAR---G-----GIGLAI 109 (340)
Q Consensus 50 ~~v~l~~~~g~~a~I~~~GA~v~S~~~~~~w~~~~g~e~L~~~~~----~~~--------~~~ir---G-----GiPvlf 109 (340)
+.|+|++.++.+|+|..+||+|+||+ +.. +++|+||..+. +.. ..+.| | |.++||
T Consensus 1 ~~itL~n~~~~~~~i~~~Ga~l~s~~----~~~-~~~~~l~~~~~~~~~~~~~~~~~~l~p~~~Ri~~g~~~~~g~~~~l 75 (300)
T PF01263_consen 1 DLITLENGNGLSAVIPEYGAELTSLQ----VKG-NGREVLWQPDPADAYWSNSFGGPILFPWPNRIRNGRFTFDGKPYCL 75 (300)
T ss_dssp EEEEEEETTSEEEEEETBTTEEEEEE----ETT-TTEESB-B-STHHHHHHSTCTTCEECSCSSEEGGGEEEETTEEEEB
T ss_pred CEEEEECCCceEEEEeccCcEEEEEE----ECC-CCeEEecCCCChHHhcccccceeeeecccceEECCEEEECCEEEEe
Confidence 46899997678999999999999986 222 36999999764 111 12455 6 899999
Q ss_pred eecCCCC-CCCccccCCCeEEEEEcC-CCCCeEEEEEc-------ccCCceEEEEEEEEeCCc-eEEEEEEEECCCccee
Q 019471 110 NDASEAG-SKGSLISSSQWTVKDVDS-DTIDALQVELS-------CTSGALDITYVVSLYPLS-MATAVIVKNNGRKAVT 179 (340)
Q Consensus 110 P~fg~~g-~~HGfar~~~W~v~~~~~-~~~~~v~~~L~-------~~p~~f~l~~~~tL~~~~-L~~~l~v~N~g~~~~~ 179 (340)
|+++..+ ++|||+|++.|+|++... + +++++|. .|||+|+++++|+|.+++ |+++++|+|.| ++||
T Consensus 76 ~~~~~~~~~~HG~~~~~~w~v~~~~~~~---~~~~~~~~~~~~~~~yP~~~~l~~~y~L~~~~~L~i~~~v~n~~-~~~p 151 (300)
T PF01263_consen 76 PWNGPYPNPIHGFARNKPWEVEEQSEDD---SVSFTLVSDPDGEEGYPFDFRLRITYTLDENGKLTITYEVTNDG-KPMP 151 (300)
T ss_dssp SSSBTTTBEETBSGGGSB-EEEEEEETT---EEEEEEEEEETTHHHSSSEEEEEEEEEEETTEEEEEEEEEEESS-SEEE
T ss_pred eeccCCCcCCCCCcccccEEEEEecccc---eEEEEEEecCccceeeccceeeEEEEEECCCCeEEEEEEEEecC-ccEE
Confidence 9988544 999999999999999885 4 6666653 389999999999999999 99999999999 9999
Q ss_pred eeeeccceEecC----CCCceEEecCCCCceecCCCCCCCCccCCcccccccccccccceeeccCeeeecc--ccceeec
Q 019471 180 LTSAILSHLLFK----RRNGTGIRGLKGCSYCKHPPLSSPFELLPPSEAMKNDEKQGIWNVQDVPITVLKD--KLSRVYA 253 (340)
Q Consensus 180 f~~g~Hpyf~v~----~~~~~~v~gl~g~~y~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Drvy~ 253 (340)
|++|+||||+++ +...+.+.+.....+.+.. ++.++ ..... ...+... .+...... .+|++|.
T Consensus 152 ~~~g~HpyF~l~~~~~~~~~~~~~~~~~~~~~~~~--------lptg~-~~~~~-~~~~d~~-~~~~i~~~~~~~D~~f~ 220 (300)
T PF01263_consen 152 FNLGFHPYFNLPGEDIDDHQLQVPADEYLELDERL--------LPTGE-LAPVK-GTPFDFR-QGRPIGDDIPGLDHCFV 220 (300)
T ss_dssp EBEEEEEEEETTCTSGTTGEEEEEEEEEEEEETTS--------SEEEE-EEETT-TCETCGS-SSEEECSSCTCEEEEEE
T ss_pred eeccccceEEcCCcceeeeEEEeccceeeeccccc--------CCcee-eeccc-CCccccc-cCeeecccccccceEEE
Confidence 999999999999 4445555553332322211 22111 00000 0001111 12222222 5788886
Q ss_pred CCCcccccccccCCC-CeEEEEeCCCCeEEEEEE-cCCceEEEeCCCCCCC-CC-----CCCeEEEecCcccCC-CEEeC
Q 019471 254 APPAERSKAFYYTPP-SKFETLDQGRELFFRIIR-IGFEDIYLGSPGSFSE-KY-----GKDYFICTGPAAMLV-PVVVQ 324 (340)
Q Consensus 254 ~~~~~~~d~~~~~~~-~~~~l~d~~~~~~i~v~~-~gf~~~vvWnP~~~~d-~~-----~~~~fvCvEP~~~~~-~v~L~ 324 (340)
. .. ....+.+...+..+.++. .+++.++||||+.... ++ ....|+|+|++.... .+.|+
T Consensus 221 ~------------~~~~~~~~~~~~~~~~i~l~~~~~~p~~~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 288 (300)
T PF01263_consen 221 L------------DPPGRPVIRLRSPGSGISLEFSTSFPWLVVWTPGFDPKYICIEPIAIEPDFVPDEANNPGKGLIVLA 288 (300)
T ss_dssp E------------SSSSEEEEEEETTTEEEEEEEEESSSEEEEEEETTSSTEETTCEEECEEESECECCCECCHEGEEEE
T ss_pred c------------CCCccEEEEeecccceEEEEecCCCCcEEEECCCCcccccCCcccccCCCeeecccccCCCCCEEEC
Confidence 4 22 345566666677777777 5789999999965320 00 111255555554333 39999
Q ss_pred CCCEEEEEEEEE
Q 019471 325 AGEKWKGAQVIE 336 (340)
Q Consensus 325 PGe~~~~~~~I~ 336 (340)
|||+++.+++|+
T Consensus 289 pGe~~~~~~~~~ 300 (300)
T PF01263_consen 289 PGESYSFSTRYT 300 (300)
T ss_dssp TTSEEEEEEEEE
T ss_pred CCCEEEEEEEEC
Confidence 999999999985
No 8
>cd01081 Aldose_epim aldose 1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism; they catalyze the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.97 E-value=5.4e-30 Score=239.55 Aligned_cols=242 Identities=13% Similarity=0.080 Sum_probs=170.3
Q ss_pred EEEEecCCeEEEEecccccccCCCceEEEEecCC--CCCCCCccceeeeeeeecCCC-------------------C-CC
Q 019471 61 SVRLSIPDAHVTSYKPKVEWKDDGFEEVLYTVGG--ADSGAKARGGIGLAINDASEA-------------------G-SK 118 (340)
Q Consensus 61 ~a~I~~~GA~v~S~~~~~~w~~~~g~e~L~~~~~--~~~~~~irGGiPvlfP~fg~~-------------------g-~~ 118 (340)
+++|..+||+|.||+ ++ +++++||.++. .....+.++|.|+|||++|+- . ++
T Consensus 2 ~~~i~~~Ga~i~~~~----~~--~~~~~l~~~~~~~~~~~~~~~~~~~~l~P~~gri~~g~~~~~g~~~~~~~~~~~~~l 75 (284)
T cd01081 2 VAVIAPRGANIISLK----VK--GDVDLLWGYPDAEEYPLAPTGGGGAILFPFANRISDGRYTFDGKQYPLNEDEGGNAI 75 (284)
T ss_pred EEEEeCcCcEEEEEE----cC--CCceEEecCCChhhhcccCCCCcceEecCcCCcccCCEEeECCEEecCCCCCCCccc
Confidence 678999999999987 33 36899999876 333567899999999999951 1 79
Q ss_pred CccccCCCeEEEEEcCCCCCeEEEEEc------ccCCceEEEEEEEEeCCceEEEEEEEECCCcceeeeeeccceEecCC
Q 019471 119 GSLISSSQWTVKDVDSDTIDALQVELS------CTSGALDITYVVSLYPLSMATAVIVKNNGRKAVTLTSAILSHLLFKR 192 (340)
Q Consensus 119 HGfar~~~W~v~~~~~~~~~~v~~~L~------~~p~~f~l~~~~tL~~~~L~~~l~v~N~g~~~~~f~~g~Hpyf~v~~ 192 (340)
|||+|++.|+++..+.+ .+++++++. .||++|+++++|+|.+++|+++++|+|+++++|||++|+||||++++
T Consensus 76 HG~~~~~~w~v~~~~~~-~~~v~l~~~~~~~~~~~P~~~~l~~ty~L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~~~~ 154 (284)
T cd01081 76 HGFVRNLPWRVVATDEE-EASVTLSYDLNDGPGGYPFPLELTVTYTLDADTLTITFTVTNLGDEPMPFGLGWHPYFGLPG 154 (284)
T ss_pred cCCeecCcEEEEEeccC-CcEEEEEEEeCCCCCCCCEEEEEEEEEEEeCCeEEEEEEEEeCCCCCcceeeecCceEecCC
Confidence 99999999999987632 337777763 38999999999999999999999999999999999999999999997
Q ss_pred C--CceEEecCCCCceecCCCCCCCCccCCcccccccccccccceeeccCeeeeccccceeecCCCcccccccccCCCCe
Q 019471 193 R--NGTGIRGLKGCSYCKHPPLSSPFELLPPSEAMKNDEKQGIWNVQDVPITVLKDKLSRVYAAPPAERSKAFYYTPPSK 270 (340)
Q Consensus 193 ~--~~~~v~gl~g~~y~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Drvy~~~~~~~~d~~~~~~~~~ 270 (340)
. +++.+.... ..++.... ..++..+.... ..+.. ..........+|++|...... .....
T Consensus 155 ~~~~~~~l~~~~-~~~~~~~~-----~~~~~~~~~~~----~~~~~-~~~~~~~~~~~D~~~~~~~~~-------~~~~~ 216 (284)
T cd01081 155 VAIEDLRLRVPA-SKVLPLDD-----LLPPTGELEVP----GEEDF-RLGRPLGGGELDDCFLLLGND-------AGTAE 216 (284)
T ss_pred CcccceEEEecC-CEEEecCC-----ccCCCCccCCc----ccccc-cCCcCcCCcccccccccCcCC-------CCeeE
Confidence 5 666666432 34443211 01111100000 00011 111122234677777531100 01136
Q ss_pred EEEEeCCCCeEEEEEEcCCceEEEeCCCCCCCCCCCCeEEEecCccc--C-------CCEEeC-CCCEEEEEE
Q 019471 271 FETLDQGRELFFRIIRIGFEDIYLGSPGSFSEKYGKDYFICTGPAAM--L-------VPVVVQ-AGEKWKGAQ 333 (340)
Q Consensus 271 ~~l~d~~~~~~i~v~~~gf~~~vvWnP~~~~d~~~~~~fvCvEP~~~--~-------~~v~L~-PGe~~~~~~ 333 (340)
++|.++..++.+++.... +.++||+|+. ++.+|+|||||.. + ..++|+ |||+++.+.
T Consensus 217 ~~l~~~~~~~~l~~~~~~-~~~~v~t~~~-----~~~~~~ciEP~t~~~da~~~~~~~~~~L~~pge~~~~~~ 283 (284)
T cd01081 217 ARLEDPDSRISVEFETGW-PFWQVYTGDG-----GRRGSVAIEPMTSAPDAFFNNNGGLITLKPPGETRTFSI 283 (284)
T ss_pred EEEECCCCeEEEEEeCCC-CEEEEECCCC-----CcCCEEEEccccCCCCCCCCCCCceEEeCCCCceEEEEe
Confidence 889998888888888766 9999999841 2335999999942 1 138999 999888764
No 9
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR. Proteins similar to Escherichia coli YihR are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.96 E-value=2.6e-27 Score=223.20 Aligned_cols=245 Identities=11% Similarity=0.087 Sum_probs=163.7
Q ss_pred CEEEEecCCeEEEEecccccccCCCceEEEEecCC-CCCCCCccceeeeeeeecCC--------CC--------------
Q 019471 60 SSVRLSIPDAHVTSYKPKVEWKDDGFEEVLYTVGG-ADSGAKARGGIGLAINDASE--------AG-------------- 116 (340)
Q Consensus 60 ~~a~I~~~GA~v~S~~~~~~w~~~~g~e~L~~~~~-~~~~~~irGGiPvlfP~fg~--------~g-------------- 116 (340)
++++|..+||.|+||+ + +|+++||..+. .. ....+ | |+|||+.|+ +|
T Consensus 1 ~~v~i~~~Ga~l~~~~----~---~g~~il~~~~~~~~-~~~~~-g-~~l~p~~nRi~~g~~~~~G~~y~l~~N~~~~~~ 70 (284)
T cd09022 1 YRAVVTEVGAGLRSLT----V---GGRDLVEPYPADEV-PPGAA-G-QVLAPWPNRIADGRYTFDGVEHQLPITEPERGN 70 (284)
T ss_pred CEEEEEecCcEEEEEE----E---CCEEEEecCCCccC-Ccccc-c-cEEeeeCCcccCCEEEECCEEEEccCcCCCCCC
Confidence 4688999999999976 2 46899997654 21 11233 3 799998886 11
Q ss_pred CCCccccCCCeEEEEEcCCCCCeEEEEEc-----ccCCceEEEEEEEEeCCceEEEEEEEECCCcceeeeeeccceEecC
Q 019471 117 SKGSLISSSQWTVKDVDSDTIDALQVELS-----CTSGALDITYVVSLYPLSMATAVIVKNNGRKAVTLTSAILSHLLFK 191 (340)
Q Consensus 117 ~~HGfar~~~W~v~~~~~~~~~~v~~~L~-----~~p~~f~l~~~~tL~~~~L~~~l~v~N~g~~~~~f~~g~Hpyf~v~ 191 (340)
++|||+|.+.|++++.+++ +++++|. .||++|+++++|+|.++.|+++++|+|+++++|||++|+||||+++
T Consensus 71 ~~HG~~~~~~w~v~~~~~~---~v~l~l~~~~~~~yP~~~~~~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~l~ 147 (284)
T cd09022 71 AIHGLVRWADWQLVEHTDS---SVTLRTRIPPQPGYPFTLELTVTYELDDDGLTVTLTATNVGDEPAPFGVGFHPYLSAG 147 (284)
T ss_pred CCcCCeecceEEEeeccCC---eEEEEEEeCCccCCCceEEEEEEEEEcCCcEEEEEEEEeCCCCCeEeeeEecceEecC
Confidence 3999999999999886644 6777763 4799999999999999999999999999999999999999999998
Q ss_pred CC--CceEEecCCCCceecCCCCCCCCccCCcccccccccccccceeeccCeeeeccccceeecCCCcccccccccCCCC
Q 019471 192 RR--NGTGIRGLKGCSYCKHPPLSSPFELLPPSEAMKNDEKQGIWNVQDVPITVLKDKLSRVYAAPPAERSKAFYYTPPS 269 (340)
Q Consensus 192 ~~--~~~~v~gl~g~~y~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Drvy~~~~~~~~d~~~~~~~~ 269 (340)
+. ++..+. +....++.-.. ..++.++ ....+ ..+.... ....-...+|+.|...... .....
T Consensus 148 ~~~~~~~~L~-~~a~~~~~~d~-----~~lptg~-~~~~~--~~~df~~-~~~l~~~~~D~~f~~~~~~------~~~~~ 211 (284)
T cd09022 148 GAPLDECTLT-LPADTWLPVDE-----RLLPTGT-EPVAG--TPYDFRT-GRRLGGTALDTAFTDLTRD------ADGRA 211 (284)
T ss_pred CCCcccEEEE-EECceEEecCC-----ccCCCcC-cCCCC--CCccCcC-CccccCccccccccccccC------CCCcE
Confidence 53 455543 22223332211 1233211 10000 0011101 1111123577777531100 01123
Q ss_pred eEEEEeCCCCeEEEEEE-cCCceEEEeCCCCCCCCCCCCeEEEecCccc--C------CCEEeCCCCEEEEEEEE
Q 019471 270 KFETLDQGRELFFRIIR-IGFEDIYLGSPGSFSEKYGKDYFICTGPAAM--L------VPVVVQAGEKWKGAQVI 335 (340)
Q Consensus 270 ~~~l~d~~~~~~i~v~~-~gf~~~vvWnP~~~~d~~~~~~fvCvEP~~~--~------~~v~L~PGe~~~~~~~I 335 (340)
.++|.++.. +.|+|.. .+|+.++||+|..+.. .....|||||||.. + ..+.|+|||+++++++|
T Consensus 212 ~~~l~~~~~-~~l~l~~~~~~~~~~vyt~~~~~~-~~~~~~iclEP~~~~~da~n~~~~~~~L~pge~~~~~~~i 284 (284)
T cd09022 212 RARLTGPDG-RGVELWADESFPWVQVFTADTLPP-PGRRRGLAVEPMTCPPNAFNSGTDLIVLAPGETHTASWGI 284 (284)
T ss_pred EEEEECCCC-CEEEEEECCCCCEEEEECCCCCCC-CCCCCEEEEccCCCCCCcCcCCCCcEEECCCCEEEEEEeC
Confidence 588888876 8899998 5799999999832211 11235999999942 1 13899999999998876
No 10
>PRK15172 putative aldose-1-epimerase; Provisional
Probab=99.95 E-value=5.8e-26 Score=215.83 Aligned_cols=252 Identities=10% Similarity=0.054 Sum_probs=171.2
Q ss_pred CeeEEEEEeCCCCEEEEecCCeEEEEecccccccCCCceEEEEecCCCCCCCCccceeeeeeeecCC---C-----C---
Q 019471 48 NIPIVELTVRNGSSVRLSIPDAHVTSYKPKVEWKDDGFEEVLYTVGGADSGAKARGGIGLAINDASE---A-----G--- 116 (340)
Q Consensus 48 g~~~v~l~~~~g~~a~I~~~GA~v~S~~~~~~w~~~~g~e~L~~~~~~~~~~~irGGiPvlfP~fg~---~-----g--- 116 (340)
...+++|++ +..+|+|..+||.|++|+ |+ +.++++..+. +.-.... +.+++||+.++ + |
T Consensus 9 ~~~~~~l~~-~~~~v~i~~~Ga~i~~l~----~~---~~~vv~~~~~-~~~~~~~-~g~~L~P~anRI~~g~f~~~G~~y 78 (300)
T PRK15172 9 SGQTISLAA-GDYQATIVTVGAGLAELT----FQ---GRHLVIPHKP-EEMPLAH-LGKVLIPWPNRIANGCYRYQGQEY 78 (300)
T ss_pred CcCEEEEeC-CCEEEEEecCCcEEEEEE----EC---CEEEEecCCc-cccCccc-cccEecccCCeecCCEEEECCEEE
Confidence 345678887 447999999999999987 53 4688876543 1111223 34799998775 1 1
Q ss_pred -----------CCCccccCCCeEEEEEcCCCCCeEEEEEc-----ccCCceEEEEEEEEeC-CceEEEEEEEECCCccee
Q 019471 117 -----------SKGSLISSSQWTVKDVDSDTIDALQVELS-----CTSGALDITYVVSLYP-LSMATAVIVKNNGRKAVT 179 (340)
Q Consensus 117 -----------~~HGfar~~~W~v~~~~~~~~~~v~~~L~-----~~p~~f~l~~~~tL~~-~~L~~~l~v~N~g~~~~~ 179 (340)
++|||++.+.|+|.+..++ ++++++. .||++|+++++|+|.+ ++|+++++++|.++++||
T Consensus 79 ~L~~N~~~~~~~lHG~~~~~~W~v~~~~~~---~v~l~~~~~~~~gyP~~~~~~v~y~L~~~~~L~i~~~~~n~~~~~~P 155 (300)
T PRK15172 79 QLPINEHVSKAAIHGLLAWRDWQISELTAT---SVTLTAFLPPSYGYPFMLASQVIYSLDAATGLSVEIASQNIGDVPAP 155 (300)
T ss_pred ECCCCCCCCCcccCCCccCceEEEEEecCC---EEEEEEEcCCCCCCCEEEEEEEEEEEccCCeEEEEEEEEECCCCcee
Confidence 3999999999999877655 6777773 4799999999999985 799999999999999999
Q ss_pred eeeeccceEecCC--CCceEEecCCCCceecCCCCCCCCccCCcccccccccccccceeeccCeeeeccccceeecCCCc
Q 019471 180 LTSAILSHLLFKR--RNGTGIRGLKGCSYCKHPPLSSPFELLPPSEAMKNDEKQGIWNVQDVPITVLKDKLSRVYAAPPA 257 (340)
Q Consensus 180 f~~g~Hpyf~v~~--~~~~~v~gl~g~~y~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Drvy~~~~~ 257 (340)
|++|+||||+++. +.+..+. +....++.... ..+++ +.....+...++ .+ ....-...+|+.|...
T Consensus 156 ~~~g~HpYFnl~~~~~~~~~L~-~~a~~~~~~d~-----~~iPt-g~~~~~~~~~df--~~-~~~l~~~~~D~~f~~~-- 223 (300)
T PRK15172 156 YGVGIHPYLTCNLTSVDEYLLQ-LPANQVLAVDE-----HANPT-TLHHVDELDLDF--SQ-AKKIAATKIDHTFKTA-- 223 (300)
T ss_pred eEEecCceEecCCCChhceEEE-EeCCeEEecCC-----CcCCC-ccccCCCCCcCC--CC-CeECCCCCccCEEEcC--
Confidence 9999999999873 4455554 23344443322 11322 100000001111 11 1111123578888631
Q ss_pred ccccccccCCCCeEEEEeCCCCeEEEEEEcCCceEEEeCCCCCCCCCCCCeEEEecCccc--C------CCEEeCCCCEE
Q 019471 258 ERSKAFYYTPPSKFETLDQGRELFFRIIRIGFEDIYLGSPGSFSEKYGKDYFICTGPAAM--L------VPVVVQAGEKW 329 (340)
Q Consensus 258 ~~~d~~~~~~~~~~~l~d~~~~~~i~v~~~gf~~~vvWnP~~~~d~~~~~~fvCvEP~~~--~------~~v~L~PGe~~ 329 (340)
.....++|.++..++.+.+.. +.+.++||+|... + ..++||||+.. + ..+.|+|||++
T Consensus 224 --------~~~~~~~l~~~~~g~~l~~~~-~~~~~~vyt~~~~----~-~~~~ciEp~t~p~dA~n~~~g~~~L~pge~~ 289 (300)
T PRK15172 224 --------NDLWEVRITHPQQALSVSLCS-DQPWLQIYSGEKL----Q-RQGLAVEPMSCPPNAFNSGIDLLLLEPGKTH 289 (300)
T ss_pred --------CCceEEEEEeCCCCeEEEEEc-CCCEEEEECCCCC----C-CCEEEEeCCCCCCCCCCCCCCCEEECCCCEE
Confidence 111258899998888888876 3478999998311 1 24999999942 1 23899999999
Q ss_pred EEEEEEEee
Q 019471 330 KGAQVIEHD 338 (340)
Q Consensus 330 ~~~~~I~~~ 338 (340)
+++++|...
T Consensus 290 ~~~~~i~~~ 298 (300)
T PRK15172 290 RLFFNIGGQ 298 (300)
T ss_pred EEEEEEEEE
Confidence 999999864
No 11
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1.4e-24 Score=206.94 Aligned_cols=256 Identities=18% Similarity=0.217 Sum_probs=167.0
Q ss_pred CCeeEEEEEeC--CCCEEEEecCCeEEEEecccccccCCCceEEEEecCCCCCCCCccc-eeeeeeeecCC--C------
Q 019471 47 NNIPIVELTVR--NGSSVRLSIPDAHVTSYKPKVEWKDDGFEEVLYTVGGADSGAKARG-GIGLAINDASE--A------ 115 (340)
Q Consensus 47 ~g~~~v~l~~~--~g~~a~I~~~GA~v~S~~~~~~w~~~~g~e~L~~~~~~~~~~~irG-GiPvlfP~fg~--~------ 115 (340)
.+.++..|+.. ++..+.|...||.|+||+ . .+++++...+.++.....++ +.++|+|+.++ +
T Consensus 8 ~~~~~~~i~~~~~~~~~~~~~~~GA~l~~l~------~-~~~~v~l~~~~~~~~~~~~~~~ga~l~p~anRI~~g~f~~~ 80 (308)
T COG2017 8 DGQPVRLLTLGNGGGMVVTVPDWGATLTSLR------V-NGRNLLLGFDDAESYPATRGYGGAILGPYANRISNGRFTLD 80 (308)
T ss_pred CCCceEEEEEeCCCeEEEEEccCCcEEEEEE------E-CCceEEeecCCHHHhccccccccceecCccCcccCCEEEEC
Confidence 44445455544 444677778999999976 2 45677655442222222334 78999998886 1
Q ss_pred C------------CCCccccCCCeEEEEEcCCCCCeEEEEEc----ccCCceEEEEEEEEeCCceEEEEEEEECCCccee
Q 019471 116 G------------SKGSLISSSQWTVKDVDSDTIDALQVELS----CTSGALDITYVVSLYPLSMATAVIVKNNGRKAVT 179 (340)
Q Consensus 116 g------------~~HGfar~~~W~v~~~~~~~~~~v~~~L~----~~p~~f~l~~~~tL~~~~L~~~l~v~N~g~~~~~ 179 (340)
| ++||+++..+|++.+.+.++...+++.++ .||++|+++++|+|.+++|+++++++|.++++||
T Consensus 81 G~~y~L~~N~~~~~lHG~~~~~~~~v~~~~~~~~~~~~l~~~~~~~gyP~~l~~~vtY~L~~~~L~v~~~~~n~~~~~~p 160 (308)
T COG2017 81 GKTYQLPPNEGGNALHGGARDFDWQVWEAEEDDNAEFSLVLRDGEDGYPGNLEATVTYTLNEDGLTVTYEVTNDGDEPTP 160 (308)
T ss_pred CEEEEeCCCCCCccccCCccCCCeeEEEEEeccCCEEEEEecccCCCCCceEEEEEEEEEcCCCEEEEEEEEeCCCCcce
Confidence 1 49999999999999987664445555552 4899999999999999999999999999999999
Q ss_pred eeeeccceEecCCCCc---eEEecCCCCceecCCCCCCCCccCCcccccccccccccceeeccCeeeeccccceeecCCC
Q 019471 180 LTSAILSHLLFKRRNG---TGIRGLKGCSYCKHPPLSSPFELLPPSEAMKNDEKQGIWNVQDVPITVLKDKLSRVYAAPP 256 (340)
Q Consensus 180 f~~g~Hpyf~v~~~~~---~~v~gl~g~~y~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Drvy~~~~ 256 (340)
|++|+||||+++.... .... ...++..... ...++... .++... .. +.+ ......+|+.|..
T Consensus 161 ~~~g~HpYFnl~~~~~~~~~~~~---~~~~~l~~~~---~~~ip~~~-~~~~~~----~~-~~~-~~~~~~~d~~f~~-- 225 (308)
T COG2017 161 FNLGNHPYFNLPGDGRLEHILAI---ASDYYLPVDD---EEPIPTGD-IKREPK----PL-EDD-FAADDPYDHAFLL-- 225 (308)
T ss_pred ecccccceEecCCCCCcccEEEe---cCCceEEccc---CCCCCccc-cccccc----cc-ccc-cccccccccceee--
Confidence 9999999999986543 1111 1111111110 00111100 000000 00 001 0111114555532
Q ss_pred cccccccccC---CCCeEEEEeCCCCeEEEEEEc-CCceEEEeCCCCCCCCCCCCeEEEecCcc-----cCCC----EEe
Q 019471 257 AERSKAFYYT---PPSKFETLDQGRELFFRIIRI-GFEDIYLGSPGSFSEKYGKDYFICTGPAA-----MLVP----VVV 323 (340)
Q Consensus 257 ~~~~d~~~~~---~~~~~~l~d~~~~~~i~v~~~-gf~~~vvWnP~~~~d~~~~~~fvCvEP~~-----~~~~----v~L 323 (340)
.. ....+.|.++.++.+|.|+.+ .+..++.||+.. +. .|+||||+. .+.+ ..|
T Consensus 226 --------~~~~~~~~~a~l~~~~~~~~l~v~t~~p~~~~yt~~~~~-----~~-~~~clEp~~~~pdA~n~~~~~~~~L 291 (308)
T COG2017 226 --------NGARGLKPAARLYDPDSGLSLEVETDEPFVQLYTGNFLA-----GR-DGLCLEPQSGLPDAFNHPGFGLIVL 291 (308)
T ss_pred --------ccccCCcceEEEEcCCCCeEEEEEeCCCeEEEEeCCCCC-----cC-CeEEeeeccCCCCcCCCCCccccee
Confidence 12 134688999999999999985 788999998721 33 399999995 2322 669
Q ss_pred CCCCEEEEEEEEEee
Q 019471 324 QAGEKWKGAQVIEHD 338 (340)
Q Consensus 324 ~PGe~~~~~~~I~~~ 338 (340)
+|||+++..+++++.
T Consensus 292 ~pGe~~~~~~~~~~~ 306 (308)
T COG2017 292 EPGETYSAETRFRFE 306 (308)
T ss_pred CCCCEEEEEEEEEEe
Confidence 999999999999875
No 12
>cd09019 galactose_mutarotase_like galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.
Probab=99.92 E-value=1.4e-22 Score=194.77 Aligned_cols=260 Identities=14% Similarity=0.113 Sum_probs=162.0
Q ss_pred EEEEeCCCCEEEEecCCeEEEEecccccccCCCc--eEEEEecCC---CCCCCCccceeeeeeeecCC--------CC--
Q 019471 52 VELTVRNGSSVRLSIPDAHVTSYKPKVEWKDDGF--EEVLYTVGG---ADSGAKARGGIGLAINDASE--------AG-- 116 (340)
Q Consensus 52 v~l~~~~g~~a~I~~~GA~v~S~~~~~~w~~~~g--~e~L~~~~~---~~~~~~irGGiPvlfP~fg~--------~g-- 116 (340)
++|++.++.+++|..+||.|.||+ ....+| +++||..+. |....+..| +++.|+.|+ +|
T Consensus 2 ~~l~n~~~~~~~i~~~GA~l~~l~----~~~~~g~~~~~v~~~~~~~~~~~~~~~~g--~~lgp~anRi~~g~~~~~G~~ 75 (326)
T cd09019 2 YTLTNGNGLRVSILNYGATIQSLK----VPDKNGKLRDVVLGFDDLEDYLKNSPYFG--ATVGRVANRIANGRFTLDGKT 75 (326)
T ss_pred EEEECCCCcEEEEECcCcEEEEEE----EECCCCCEeeeEECCCCHHHHhhCCCccC--CcccCcCCeecCCEEEECCEE
Confidence 578886679999999999999987 322222 899999753 554433333 334555554 11
Q ss_pred ---C-------C----CccccCCCeEEEEEcCCCCCeEEEEEc------ccCCceEEEEEEEEeC-CceEEEEEEEECCC
Q 019471 117 ---S-------K----GSLISSSQWTVKDVDSDTIDALQVELS------CTSGALDITYVVSLYP-LSMATAVIVKNNGR 175 (340)
Q Consensus 117 ---~-------~----HGfar~~~W~v~~~~~~~~~~v~~~L~------~~p~~f~l~~~~tL~~-~~L~~~l~v~N~g~ 175 (340)
+ + |||+|. .|++...+++ +|++++. .||+.|+++++|+|.+ ++|+++++++| +
T Consensus 76 y~l~~Ne~~~~LHGg~~G~~~~-~w~~~~~~~~---~v~l~~~~~~~~~gyP~~~~~~v~y~L~~~~~L~i~~~~~~--~ 149 (326)
T cd09019 76 YQLEANEGPNHLHGGPKGFDKR-VWDVEEVEEN---SVTFSLVSPDGEEGFPGNLTVTVTYTLTDDNELTIEYEATT--D 149 (326)
T ss_pred EEccCCCCCcccCCCCccccCc-EEeEEeccCC---EEEEEEECCcccCCCCeEEEEEEEEEECCCCEEEEEEEEEe--C
Confidence 2 2 666776 9999887644 7888774 4799999999999998 89999999998 4
Q ss_pred cceeeeeeccceEecCC-----CCceEEecCCCCceecCCCCCCCCccCCcccccccccccccceee--------ccCee
Q 019471 176 KAVTLTSAILSHLLFKR-----RNGTGIRGLKGCSYCKHPPLSSPFELLPPSEAMKNDEKQGIWNVQ--------DVPIT 242 (340)
Q Consensus 176 ~~~~f~~g~Hpyf~v~~-----~~~~~v~gl~g~~y~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~ 242 (340)
++|||++|+||||+++. +++..+. +....|+.... ..++.++.....+...++... .....
T Consensus 150 ~~~p~~~g~HpyFnl~~~~~~~~~~~~L~-~~a~~~~~~d~-----~~iPtG~~~~~~~~~~df~~~~~l~~~~~~~~~~ 223 (326)
T cd09019 150 KPTPVNLTNHSYFNLAGEGSGDILDHELQ-INADRYLPVDE-----ELIPTGEILPVAGTPFDFRKPKPIGRIDLDDEQL 223 (326)
T ss_pred CCeEecccceeeEecCCCCCCCccceEEE-EecCcEEeeCC-----CCCcCCCceecCCCCccccCccCccccccchhhc
Confidence 99999999999999984 3344443 22334433221 112221100000000011100 00001
Q ss_pred eeccccceeecCCCcccccccccCCCCeEEEEeCCCCeEEEEEEcCCceEEEeCCCCCCCCC-------CCCeEEEecCc
Q 019471 243 VLKDKLSRVYAAPPAERSKAFYYTPPSKFETLDQGRELFFRIIRIGFEDIYLGSPGSFSEKY-------GKDYFICTGPA 315 (340)
Q Consensus 243 ~~~~~~Drvy~~~~~~~~d~~~~~~~~~~~l~d~~~~~~i~v~~~gf~~~vvWnP~~~~d~~-------~~~~fvCvEP~ 315 (340)
.....+|++|.-.... ......++|.++.+++.+.|.. ..+.++||++....+.. ....+|||||+
T Consensus 224 ~~~~~~D~~f~l~~~~------~~~~~~a~l~~~~sg~~l~v~t-~~p~~~vyT~~~~~~~~~~~~~~~~~~~~iclEpq 296 (326)
T cd09019 224 KLGGGYDHNFVLDKGG------GKLRPAARLTSPESGRKLEVYT-TQPGVQFYTGNFLDGTPGGGGKVYGKRSGFCLETQ 296 (326)
T ss_pred ccCCCcceEEEECCCC------CccceeEEEEcCCCCcEEEEec-CCCEEEEEeCCCCCcccCCCCcEeCCCCEEEEecc
Confidence 1124578888521000 0012357888988888888865 56899999984321100 11249999999
Q ss_pred c----cCC----CEEeCCCCEEEEEEEEE
Q 019471 316 A----MLV----PVVVQAGEKWKGAQVIE 336 (340)
Q Consensus 316 ~----~~~----~v~L~PGe~~~~~~~I~ 336 (340)
. .+. .+.|+|||+++...+++
T Consensus 297 ~~pdA~n~~~~g~~~L~pge~~~~~~~y~ 325 (326)
T cd09019 297 HFPDAPNHPNFPSIILRPGETYRHTTVYR 325 (326)
T ss_pred CCCCcccccCCCCeEECCCCEEEEEEEEE
Confidence 3 222 38999999999887764
No 13
>PLN00194 aldose 1-epimerase; Provisional
Probab=99.86 E-value=6e-19 Score=170.29 Aligned_cols=268 Identities=17% Similarity=0.152 Sum_probs=159.5
Q ss_pred eEEEEEeCCCCEEEEecCCeEEEEecccccccCCCc--eEEEEecCC---CCCCCCccceeeeeeeecCC--------CC
Q 019471 50 PIVELTVRNGSSVRLSIPDAHVTSYKPKVEWKDDGF--EEVLYTVGG---ADSGAKARGGIGLAINDASE--------AG 116 (340)
Q Consensus 50 ~~v~l~~~~g~~a~I~~~GA~v~S~~~~~~w~~~~g--~e~L~~~~~---~~~~~~irGGiPvlfP~fg~--------~g 116 (340)
..++|++ ...+++|..+||.|+||+ .....| ++++=..+. +....+..| + ++.|+.++ +|
T Consensus 10 ~~~~L~n-~~l~~~i~~~GA~l~s~~----~~~~~g~~~~vvlg~~~~~~y~~~~~~~G-a-~lgp~anRI~~g~~~~~G 82 (337)
T PLN00194 10 GIYELKN-GNISVKLTNYGATITSLI----LPDKNGKLADVVLGFDSVEPYKNDSPYFG-A-IVGRVANRIKGAKFTLNG 82 (337)
T ss_pred EEEEEEe-CCEEEEEECCCcEEEEEE----eECCCCCEeeeEECCCCHHHHhhCCCccC-C-eeCCCCCceeCCEEEECC
Confidence 3566776 347999999999999986 211122 555533222 222233433 2 26665443 11
Q ss_pred ------------CCCcccc---CCCeEEEEEcCCCCCeEEEEEc------ccCCceEEEEEEEEeC-CceEEEEEEEECC
Q 019471 117 ------------SKGSLIS---SSQWTVKDVDSDTIDALQVELS------CTSGALDITYVVSLYP-LSMATAVIVKNNG 174 (340)
Q Consensus 117 ------------~~HGfar---~~~W~v~~~~~~~~~~v~~~L~------~~p~~f~l~~~~tL~~-~~L~~~l~v~N~g 174 (340)
.+||+.+ .+.|+|+...++++.+|++++. .||+.|+++++|+|.+ +.|+++++++|.
T Consensus 83 ~~y~l~~N~~~~~lHGg~~G~~~~~w~v~~~~~~~~~~v~~~l~~~~~~~gyP~~~~~~v~Y~L~~~~~L~i~~~~~n~- 161 (337)
T PLN00194 83 VTYKLPPNNGPNSLHGGPKGFSKVVWEVAKYKKGEKPSITFKYHSFDGEEGFPGDLSVTVTYTLLSSNTLRLDMEAKPL- 161 (337)
T ss_pred EEEEeccCCCCcccCCCCcccCceEEeEEEeccCCCcEEEEEEECCCcCCCCCEEEEEEEEEEECCCCeEEEEEEEEEC-
Confidence 4697654 5889998876543347888874 4799999999999985 899999999999
Q ss_pred CcceeeeeeccceEecCC-----CCceEEecCCCCceecCCCCCCCCccCCcccccccccccccceeec---cCeeeecc
Q 019471 175 RKAVTLTSAILSHLLFKR-----RNGTGIRGLKGCSYCKHPPLSSPFELLPPSEAMKNDEKQGIWNVQD---VPITVLKD 246 (340)
Q Consensus 175 ~~~~~f~~g~Hpyf~v~~-----~~~~~v~gl~g~~y~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 246 (340)
+++|||++|+||||+++. +.+..+. +....|+.... +.++.++.....+...++.... ........
T Consensus 162 ~~~~p~~~g~HpYFnL~~~~~~~i~~~~L~-i~a~~~~~~d~-----~~iPtG~~~~v~~t~~Df~~~~~l~~~~~~~~~ 235 (337)
T PLN00194 162 NKATPVNLAQHTYWNLAGHNSGDILSHKIQ-IFGSHITPVDE-----NLIPTGEILPVKGTPFDFTTPKKIGSRINELPK 235 (337)
T ss_pred CCCeEEEccccceEEcCCCCCCCcCCeEEE-EecCCEEEeCC-----CcCcCCceeeCCCCCcccCCCcCcchhhccccC
Confidence 999999999999999974 3344443 22334443221 1132211100000001111000 00000123
Q ss_pred ccceeecCCCcccccccccCCCCeEEEEeCCCCeEEEEEEcCCceEEEeCCCCCCCCC-------CCCeEEEecCcc---
Q 019471 247 KLSRVYAAPPAERSKAFYYTPPSKFETLDQGRELFFRIIRIGFEDIYLGSPGSFSEKY-------GKDYFICTGPAA--- 316 (340)
Q Consensus 247 ~~Drvy~~~~~~~~d~~~~~~~~~~~l~d~~~~~~i~v~~~gf~~~vvWnP~~~~d~~-------~~~~fvCvEP~~--- 316 (340)
.+|+.|.-..... .+....++|.++..+++++|..+. +.++||++-...+.+ .....|||||+.
T Consensus 236 g~Dh~f~l~~~~~-----~~~~~~a~l~~~~sg~~l~v~t~~-p~v~vyT~n~~~~~~~~~~~~~~~~~~i~lEpq~~pd 309 (337)
T PLN00194 236 GYDHNYVLDGEEK-----EGLKKAAKVKDPKSGRVLELWTNA-PGMQFYTSNYVNGVKGKGGAVYGKHAGLCLETQGFPD 309 (337)
T ss_pred CcceEEEECCCCc-----ccceeeEEEEcCCCCCEEEEEeCC-CEEEEECCCCCCCccCCCCCEeCCCCEEEEeccCCCC
Confidence 6788885211000 012235788888878889998744 889999864221101 112499999993
Q ss_pred -cCC----CEEeCCCCEEEEEEEEEe
Q 019471 317 -MLV----PVVVQAGEKWKGAQVIEH 337 (340)
Q Consensus 317 -~~~----~v~L~PGe~~~~~~~I~~ 337 (340)
++. .+.|.|||.+.-..+...
T Consensus 310 a~n~~~~~~~~L~pge~~~~~t~y~f 335 (337)
T PLN00194 310 AVNQPNFPSVVVNPGEKYKHTMLFEF 335 (337)
T ss_pred cccCCCCCCeEECCCCEEEEEEEEEE
Confidence 232 379999998887766543
No 14
>TIGR02636 galM_Leloir galactose mutarotase. Members of this protein family act as galactose mutarotase (D-galactose 1-epimerase) and participate in the Leloir pathway for galactose/glucose interconversion. All members of the seed alignment for this model are found in gene clusters with other enzymes of the Leloir pathway. This enzyme family belongs to the aldose 1-epimerase family, described by pfam model pfam01263. However, the enzyme described as aldose 1-epimerase itself (EC 5.1.3.3) is called broadly specific for D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose. The restricted genome context for genes in this family suggests members should act primarily on D-galactose.
Probab=99.81 E-value=1.8e-17 Score=159.97 Aligned_cols=265 Identities=11% Similarity=0.084 Sum_probs=158.3
Q ss_pred eeEEEEEeCCCCEEEEecCCeEEEEecccccccCCCceEEEEecCC---CCCCCCccceeeeeeeecCC-----------
Q 019471 49 IPIVELTVRNGSSVRLSIPDAHVTSYKPKVEWKDDGFEEVLYTVGG---ADSGAKARGGIGLAINDASE----------- 114 (340)
Q Consensus 49 ~~~v~l~~~~g~~a~I~~~GA~v~S~~~~~~w~~~~g~e~L~~~~~---~~~~~~irGGiPvlfP~fg~----------- 114 (340)
...++|++.+|.+++|..+||.|.||+.+- + ...++++-.-+. +....+..|.+ +.|+.++
T Consensus 4 v~~~~l~n~~g~~v~i~~~GA~i~~l~~pd--~-~~~~~vvlg~~~~~~y~~~~~~~Ga~--igp~anRI~~g~f~~~G~ 78 (335)
T TIGR02636 4 AQLITLTNNNGMTISFMDIGATWLSCQVPL--A-GELREVLLGFASMEEYYKQDAYLGAT--VGRYANRIANGSFEIDGE 78 (335)
T ss_pred eEEEEEECCCCcEEEEeCcCcEEEEEEeeC--C-CCccceEECCCCHHHHhhCCCccCCC--cCCCCceecCCEEEECCE
Confidence 346788888889999999999999986321 1 134566643332 33223333332 2332222
Q ss_pred --------CC-CCCccc---cCCCeEEEE-EcCCCCCeEEEEEc------ccCCceEEEEEEEE-eCCceEEEEEEEECC
Q 019471 115 --------AG-SKGSLI---SSSQWTVKD-VDSDTIDALQVELS------CTSGALDITYVVSL-YPLSMATAVIVKNNG 174 (340)
Q Consensus 115 --------~g-~~HGfa---r~~~W~v~~-~~~~~~~~v~~~L~------~~p~~f~l~~~~tL-~~~~L~~~l~v~N~g 174 (340)
++ .+||+. +.+.|++.. .+.+ +|++++. -||+.++++++|+| .++.|+++++++ +
T Consensus 79 ~y~L~~N~~~n~lHGg~~G~~~~~W~v~~~~~~~---~v~l~~~~~~~~~gyPg~l~~~vtY~L~~~~~L~i~~~a~--~ 153 (335)
T TIGR02636 79 TYQLSINQGGNCLHGGPEGFDKRRWNIEELQEEV---QVKFSLESPDGDQGFPGNLTVSVTYTLTDDNELTIEYEAT--T 153 (335)
T ss_pred EEEeccCCCCcccCCCCccccccEEeEeeecCCC---EEEEEEECCCcCCCCCeEEEEEEEEEECCCCEEEEEEEEE--E
Confidence 01 699999 889999976 4433 7888774 37999999999999 567999999998 8
Q ss_pred CcceeeeeeccceEecCCC------CceEEecCCCCceecCCCCCCCCccCCcccccccccccccceeec--------cC
Q 019471 175 RKAVTLTSAILSHLLFKRR------NGTGIRGLKGCSYCKHPPLSSPFELLPPSEAMKNDEKQGIWNVQD--------VP 240 (340)
Q Consensus 175 ~~~~~f~~g~Hpyf~v~~~------~~~~v~gl~g~~y~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------~~ 240 (340)
++++||.+++||||+++.. .+..+. +....|+.... ..++.++.....+...++.... ..
T Consensus 154 d~~tp~nlt~H~YFnL~g~~~~~~i~~~~L~-i~a~~~~~~d~-----~~iPtG~~~~v~~t~~Dfr~~~~l~~~~~~~~ 227 (335)
T TIGR02636 154 DKATPFNLTNHVYFNLDGADAGSDVLSHELQ-LNADRYLPLDE-----EGIPLGQLKPVDGTSFDFRKEKAIGQDFLAND 227 (335)
T ss_pred CCceEEeccccceEEcCCCCCCCChhceEEE-EECCcEEEeCC-----CcCcCCceecCCCCccccCCCcCcCccccccc
Confidence 8999999999999999752 223332 22334433221 1132211111000111111000 00
Q ss_pred eeeeccccceeecCCCcccccccccCCCCeEEEEeCCCCeEEEEEEcCCceEEEeCCCCCCCCC---C----CCeEEEec
Q 019471 241 ITVLKDKLSRVYAAPPAERSKAFYYTPPSKFETLDQGRELFFRIIRIGFEDIYLGSPGSFSEKY---G----KDYFICTG 313 (340)
Q Consensus 241 ~~~~~~~~Drvy~~~~~~~~d~~~~~~~~~~~l~d~~~~~~i~v~~~gf~~~vvWnP~~~~d~~---~----~~~fvCvE 313 (340)
.......+|+.|.-.... ......++|.++..++.+.|.. ..+.++||++....+.. + ....||||
T Consensus 228 ~~~~~~g~D~~f~l~~~~------~~~~~~a~l~~~~sg~~l~v~t-~~p~~~vyT~~~~~~~~~~~g~~~~~~~gialE 300 (335)
T TIGR02636 228 QQQLAKGYDHAFLLNGER------LDGKPAAILTSPDEDLSLEVFT-TQPALQIYTGNFLAGTPNRGGKKYVDHAGLALE 300 (335)
T ss_pred ccccCCCcceEEEECCCC------CCCceeEEEEcCCCCcEEEEec-CCCEEEEecCCCcCCccCCCCcEeCCCcEEEEe
Confidence 001112577777521000 0012247888988888888766 56899999974332111 1 12499999
Q ss_pred Ccc----cCC---C-E--EeCCCCEEEEEEEEE
Q 019471 314 PAA----MLV---P-V--VVQAGEKWKGAQVIE 336 (340)
Q Consensus 314 P~~----~~~---~-v--~L~PGe~~~~~~~I~ 336 (340)
|+. .+. + + .|.|||.+.....++
T Consensus 301 ~q~~pd~~n~~~~~~~~~~L~pge~~~~~t~y~ 333 (335)
T TIGR02636 301 TQFLPDSPNHPEWGDISCILSPGQEYQHQTRYQ 333 (335)
T ss_pred cccCCCcccccCCCCCceEECCCCEEEEEEEEE
Confidence 994 222 2 3 599999998877765
No 15
>cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013. Proteins, similar to Escherichia coli c4013, are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.73 E-value=1.7e-16 Score=149.81 Aligned_cols=236 Identities=12% Similarity=0.036 Sum_probs=143.6
Q ss_pred EEe-cCCeEEEEecccccccCCCceEEEEecCC-CC--------CCC---Cccceeeee--eeecCCC----C---CCCc
Q 019471 63 RLS-IPDAHVTSYKPKVEWKDDGFEEVLYTVGG-AD--------SGA---KARGGIGLA--INDASEA----G---SKGS 120 (340)
Q Consensus 63 ~I~-~~GA~v~S~~~~~~w~~~~g~e~L~~~~~-~~--------~~~---~irGGiPvl--fP~fg~~----g---~~HG 120 (340)
+|. ..|.-|.+++ + .|.++.|.++. .. ++. ..-||.-.- ++.+|.. + ++||
T Consensus 3 ~vlp~rg~dI~~~~----~---~g~~l~w~s~~~~~~~~~~~~~~~~~~~~~~gg~~~~cGl~~~g~p~~~~~~~~~lHG 75 (284)
T cd09023 3 EVLPDRGMDIGRAS----Y---KGIPLGWLSPVGLVVPPYYESEGGGGWRSFFGGLLTTCGLDHIGHPEVDDGEEYPLHG 75 (284)
T ss_pred eEcccCCcceeeeE----E---CCEEeccCCCCCCCCCccccCCCchhHhhcCCEEEEeECccccCCCCcCCCccccCcc
Confidence 444 3688888765 2 47899998764 11 001 123444444 6666642 2 9999
Q ss_pred cccCCCeEEEEEcCC--CCCeEEEEEcc-------cCCceEEEEEEEEeCCceEEEEEEEECCCcceeeeeeccceEecC
Q 019471 121 LISSSQWTVKDVDSD--TIDALQVELSC-------TSGALDITYVVSLYPLSMATAVIVKNNGRKAVTLTSAILSHLLFK 191 (340)
Q Consensus 121 far~~~W~v~~~~~~--~~~~v~~~L~~-------~p~~f~l~~~~tL~~~~L~~~l~v~N~g~~~~~f~~g~Hpyf~v~ 191 (340)
++++.+|+++....+ +...|+++.+. +||.++.+++|+|.+++|+++.+|+|.|+++||+++++|+||..|
T Consensus 76 ~~~~~p~~~~~~~~~~~~~~~v~l~~~~~~~~~~g~~~~l~~~i~~~l~~~~l~i~~~VtN~g~~~~P~~~~~H~n~~~p 155 (284)
T cd09023 76 RISNTPAELVGVEEDEEGDYEIEVSGEVREAALFGENLRLERTIETDLGSNEIRLEDRVTNEGFRPTPHMLLYHVNFGYP 155 (284)
T ss_pred cccCCCcceEEEEeccCCCeEEEEEEEEEEeeeecCceEEEEEEEEecCCceEEEEEEEEeCCCCCCcceEEeeEEcCCc
Confidence 999999999987653 12235555443 688899999999999999999999999999999999999999987
Q ss_pred CCC-ceEEecCCCCceecCCCCCCCCccCCcccccccccccccceeeccCeeeeccccceeecCCCcccccccccCCCCe
Q 019471 192 RRN-GTGIRGLKGCSYCKHPPLSSPFELLPPSEAMKNDEKQGIWNVQDVPITVLKDKLSRVYAAPPAERSKAFYYTPPSK 270 (340)
Q Consensus 192 ~~~-~~~v~gl~g~~y~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Drvy~~~~~~~~d~~~~~~~~~ 270 (340)
..+ +.++..- ...+..... . . ... ...|...... .....+.+|...... | ......
T Consensus 156 ~l~~~~~l~~p-~~~~~p~~~---~---~-----~~~---~~~~~~~~~p---~~~~~e~v~~~~~~~--d---~~g~~~ 212 (284)
T cd09023 156 LLDEGARLEIP-SKEVTPRDA---H---A-----AEG---LASWNTYLAP---TPGFAEQVYFHEPAA--D---EDGRAP 212 (284)
T ss_pred ccCCCCEEEec-ccccccCCh---h---h-----ccc---ccccccccCC---CCCCccEEEEEeccc--c---CCCcee
Confidence 543 4444311 111110000 0 0 000 0001000000 011123444321000 0 011235
Q ss_pred EEEEeCCCCeEEEEEEc--CCceEEEeCCCCCCCCCCCCeEEEecCccc-----------CCCEEeCCCCEEEEEE
Q 019471 271 FETLDQGRELFFRIIRI--GFEDIYLGSPGSFSEKYGKDYFICTGPAAM-----------LVPVVVQAGEKWKGAQ 333 (340)
Q Consensus 271 ~~l~d~~~~~~i~v~~~--gf~~~vvWnP~~~~d~~~~~~fvCvEP~~~-----------~~~v~L~PGe~~~~~~ 333 (340)
+.|.++..+..+.+.++ .|+++++|+... +..+.+||||+.. ...+.|+|||+++...
T Consensus 213 ~~l~~~~~g~~~~l~~~~~~~p~~~~W~~~~-----~~~y~lalEP~T~~p~~~~~~~~~g~l~~L~PGEs~~~~l 283 (284)
T cd09023 213 AALVNPRLGLGVEVRFDTDTLPYLTQWKNTG-----AGAYVLGLEPATNFPNGRAFEREQGELPTLAPGESRSYRL 283 (284)
T ss_pred EEEEcCCCCcEEEEEEehhhCCHHHHHhccC-----CCccEEEEccccCCCcchHHHHHCCCcceECCCCeEEEee
Confidence 88888877767777774 599999999721 1234677999941 1238999999998764
No 16
>PRK11055 galM galactose-1-epimerase; Provisional
Probab=99.72 E-value=6.8e-15 Score=142.27 Aligned_cols=263 Identities=11% Similarity=0.030 Sum_probs=152.4
Q ss_pred eeEEEEEeCCCCEEEEecCCeEEEEecccccccCCCc--eEEEEecC--C-CCCCCCccceeeeeeeecCC---------
Q 019471 49 IPIVELTVRNGSSVRLSIPDAHVTSYKPKVEWKDDGF--EEVLYTVG--G-ADSGAKARGGIGLAINDASE--------- 114 (340)
Q Consensus 49 ~~~v~l~~~~g~~a~I~~~GA~v~S~~~~~~w~~~~g--~e~L~~~~--~-~~~~~~irGGiPvlfP~fg~--------- 114 (340)
...++|++.+|.+++|..+||.|.||+.+ +++| ++++=-.+ + +....+..|.+ +.|+.++
T Consensus 9 v~~~tl~n~~g~~v~i~~~GA~i~~l~vp----d~~g~~~dvvlg~~~~~~y~~~~~~~Ga~--iGr~anRI~~g~f~~~ 82 (342)
T PRK11055 9 YRLLTLRNNAGMVVTLMDWGATWLSCRVP----LSDGSVREVLLGCASPEDYPDQAAYLGAS--VGRYANRIANSRFTLD 82 (342)
T ss_pred EEEEEEECCCCeEEEEeCcCcEEEEEEeE----CCCCCEeeeEECCCCHHHHhhCCCccCce--eCCcCCcccCCEEEEC
Confidence 34677888778899999999999998632 1233 56662222 2 33223333332 3332222
Q ss_pred ----------CC-CCCccc---cCCCeEEEEEcCCCCCeEEEEEc------ccCCceEEEEEEEEeCC-ceEEEEEEEEC
Q 019471 115 ----------AG-SKGSLI---SSSQWTVKDVDSDTIDALQVELS------CTSGALDITYVVSLYPL-SMATAVIVKNN 173 (340)
Q Consensus 115 ----------~g-~~HGfa---r~~~W~v~~~~~~~~~~v~~~L~------~~p~~f~l~~~~tL~~~-~L~~~l~v~N~ 173 (340)
++ .+||.. +.+.|++...+.+ +|++++. -||+.++++++|+|.++ .|+++++++
T Consensus 83 G~~y~L~~N~~~n~lHGg~~G~~~~~W~v~~~~~~---~v~l~~~~~~g~~GyPg~l~~~vtY~L~~~~~l~i~~~a~-- 157 (342)
T PRK11055 83 GETYQLSPNQGGNQLHGGPEGFDKRRWQIVNQNDR---QVTFSLSSPDGDQGFPGNLGATVTYRLTDDNRVSITYRAT-- 157 (342)
T ss_pred CEEEEcccCCCCcccCCCCcccCCcEEEEEEccCC---EEEEEEECCCcCCCCCeEEEEEEEEEEcCCCeEEEEEEEE--
Confidence 11 689986 6788999876544 7888874 37999999999999865 677776665
Q ss_pred CCcceeeeeeccceEecCC------CCceEEecCCCCceecCCCCCCCCccCCcccccccccccccceeec---c-----
Q 019471 174 GRKAVTLTSAILSHLLFKR------RNGTGIRGLKGCSYCKHPPLSSPFELLPPSEAMKNDEKQGIWNVQD---V----- 239 (340)
Q Consensus 174 g~~~~~f~~g~Hpyf~v~~------~~~~~v~gl~g~~y~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~----- 239 (340)
+++++||.++.||||+++. +.+..+. +....|+...+ ..+|.++.....+...++.... .
T Consensus 158 ~d~~tp~nlt~H~YFnL~g~~~~~~i~~h~L~-i~a~~~~~~d~-----~~iPTG~~~~v~~t~~DFr~~~~l~~~~~~~ 231 (342)
T PRK11055 158 VDKPCPVNLTNHAYFNLDGAEEGSDVRNHKLQ-INADEYLPVDE-----GGIPNGGLKSVAGTSFDFRQPKTIAQDFLAD 231 (342)
T ss_pred cCCCeEEeccccceEECCCCCCCCCccceEEE-EecCCEEEECc-----ccCccCcEeccCCCcccccCCcCcCcccccc
Confidence 7999999999999999964 1122332 22333433221 1133221111111111111000 0
Q ss_pred CeeeeccccceeecCCCcccccccccCCC-CeEEEEeCCCCeEEEEEEcCCceEEEeCCCCCCC---CCC----CCeEEE
Q 019471 240 PITVLKDKLSRVYAAPPAERSKAFYYTPP-SKFETLDQGRELFFRIIRIGFEDIYLGSPGSFSE---KYG----KDYFIC 311 (340)
Q Consensus 240 ~~~~~~~~~Drvy~~~~~~~~d~~~~~~~-~~~~l~d~~~~~~i~v~~~gf~~~vvWnP~~~~d---~~~----~~~fvC 311 (340)
........+|+.|.-... .... ..+++.++..++.+.|.. ..+.++|+++..+.+ ..+ ...=||
T Consensus 232 ~~~~~~~g~D~~fvl~~~-------~~~~~~~a~l~~~~sg~~l~v~t-~~p~lqvYT~n~~~~~~~~~g~~~~~~~gia 303 (342)
T PRK11055 232 DDQQKVKGYDHAFLLQAK-------GDGKKPAAHLWSPDEKLQMKVYT-TAPALQFYSGNFLAGTPSRGGGPYADYAGLA 303 (342)
T ss_pred hhcccCCCcceEEEECCC-------CcccceeEEEEcCCCCeEEEEEc-CCCEEEEecCCccCCccCCCCcEeCCCceEE
Confidence 000011356777742100 0111 236788888887777765 679999999743221 111 123689
Q ss_pred ecCcc----cCC------CEEeCCCCEEEEEEEEE
Q 019471 312 TGPAA----MLV------PVVVQAGEKWKGAQVIE 336 (340)
Q Consensus 312 vEP~~----~~~------~v~L~PGe~~~~~~~I~ 336 (340)
|||.. .+. .++|.|||.+....+.+
T Consensus 304 lE~q~~Pda~n~~~f~~~~~~L~pg~~y~~~t~y~ 338 (342)
T PRK11055 304 LESQFLPDSPNHPEWPQPDCILKPGEEYRSLTEYQ 338 (342)
T ss_pred EEcccCCCcccccCCCCCCeEECCCCEEEEEEEEE
Confidence 99994 221 47899999887665554
No 17
>PTZ00485 aldolase 1-epimerase; Provisional
Probab=99.57 E-value=3.6e-12 Score=124.27 Aligned_cols=275 Identities=14% Similarity=0.095 Sum_probs=155.0
Q ss_pred ceEEeeeCCeeEEEEEeCCCCEEEEecCCeEEEEecccccccCCCc-eEEEEec-C--C-CCCCCCccceeeeeeeecCC
Q 019471 40 GIKFSESNNIPIVELTVRNGSSVRLSIPDAHVTSYKPKVEWKDDGF-EEVLYTV-G--G-ADSGAKARGGIGLAINDASE 114 (340)
Q Consensus 40 g~~~~~~~g~~~v~l~~~~g~~a~I~~~GA~v~S~~~~~~w~~~~g-~e~L~~~-~--~-~~~~~~irGGiPvlfP~fg~ 114 (340)
||+++..+-+..++|++.+ .++.|..+||.|+|++.+. .+.+. ++++=-- + + +.... .-.|+.|-.. -++
T Consensus 4 ~~~~~~~~~~~~~~L~N~~-~~v~i~n~GA~i~si~v~~--~~~g~~~dvvLG~d~~~~~Y~~~~-~y~Ga~iGr~-AnR 78 (376)
T PTZ00485 4 GIEVEPYGYDKLVWLETDR-LKVGLTNYAASVASIQVYH--PADNKWIEVNCGYPKNPEEAYADP-DYMGATVGRC-AGR 78 (376)
T ss_pred eeEEEecCCCcEEEEEeCC-EEEEEECcCcEEEEEEEEc--CCCCcEEeEEECCCCCHHHHhhCC-CccCcEeCCC-CCe
Confidence 6778877888899999954 8999999999999986210 11122 4555322 1 2 33222 2344444322 111
Q ss_pred ---C---------------C--CC----CccccCCCeEEEEEcCCCCCeEEEEEc------ccCCceEEEEEEEEe---C
Q 019471 115 ---A---------------G--SK----GSLISSSQWTVKDVDSDTIDALQVELS------CTSGALDITYVVSLY---P 161 (340)
Q Consensus 115 ---~---------------g--~~----HGfar~~~W~v~~~~~~~~~~v~~~L~------~~p~~f~l~~~~tL~---~ 161 (340)
+ + .. +||- .+.|++.........+|++++. -||+.++++++|+|. +
T Consensus 79 I~~G~f~ldG~~YqL~~Neg~n~LHGG~~gf~-~~~W~v~~~~~~~~~~V~f~~~~~dg~~GfPG~l~v~vtYtL~~~~~ 157 (376)
T PTZ00485 79 VAGGVFTLDGVKYYTQKNRGENTCHCGDDAYH-KKHWGMKLIETANVIGVRFNYTSPHMENGFPGELVSKVTYSIERSKP 157 (376)
T ss_pred EECCEEEECCEEEEccCCCCCcccCCCCCccc-eeeeeEEEeccCCCcEEEEEEECCCcCCCCCEEEEEEEEEEEecCCC
Confidence 0 1 23 4665 6889986443221236777774 379999999999996 5
Q ss_pred CceEEE---EEEEECCCcceeeeeeccceEecCCC-----------------CceEEecCCCCceecCCCCCCCCccCCc
Q 019471 162 LSMATA---VIVKNNGRKAVTLTSAILSHLLFKRR-----------------NGTGIRGLKGCSYCKHPPLSSPFELLPP 221 (340)
Q Consensus 162 ~~L~~~---l~v~N~g~~~~~f~~g~Hpyf~v~~~-----------------~~~~v~gl~g~~y~d~~~~~~~~~~l~~ 221 (340)
++|+++ ++++|++++++||.++.|+||+++.. .+..+. +....|+.-.+ ..+|.
T Consensus 158 ~~L~i~y~a~~~~n~~d~~Tp~nltnH~YFNL~g~~~~~~~~~~~~~~~~~i~~h~L~-i~a~~~l~~de-----~~IPT 231 (376)
T PTZ00485 158 NVLKTIYDSYIPETSPADATPVNIFNHAYWNLNGIPERNGKKNAVWVQPESVRNHWLR-VPASRVAEADR-----MAIPT 231 (376)
T ss_pred CEEEEEEEEEeccccCCccceeeeccceeEEcCCCccccccccccccCCCcccceEEE-EecCcEEEeCc-----ccCcc
Confidence 789999 88899999999999999999999641 111121 22223332111 12333
Q ss_pred ccccccccccccceee---ccC---eeee---ccccceeecCCCcccccccccCCCCeEEEEeCCCCeEEEEEEcCCceE
Q 019471 222 SEAMKNDEKQGIWNVQ---DVP---ITVL---KDKLSRVYAAPPAERSKAFYYTPPSKFETLDQGRELFFRIIRIGFEDI 292 (340)
Q Consensus 222 ~~~~~~~~~~~~~~~~---~~~---~~~~---~~~~Drvy~~~~~~~~d~~~~~~~~~~~l~d~~~~~~i~v~~~gf~~~ 292 (340)
++-....+...++... ++. .... ....|+.|.-..... ......+++.++..++++.|.. ..+-+
T Consensus 232 G~i~~v~~t~fDfr~~~~ig~~~~~~~~~~~~~~G~Dh~fvl~~~~~-----~~~~~~a~l~~p~sg~~l~v~T-~~P~~ 305 (376)
T PTZ00485 232 GEFLSVEGTGLDFRQGRVIGDCIDDVALLDRDPCGYDHPLAIDGWEK-----GKLMLHAEAKSPVTNICMKVYS-TFPCM 305 (376)
T ss_pred CceeccCCCCccCcCCcccchhhhhhhhhcccCCCCCcceEECCCCC-----ccccEEEEEEcCCCCCEEEEEE-CCCEE
Confidence 2111111111111100 000 0000 023565553100000 0001236788999998888876 67889
Q ss_pred EEeCCCCCCC----CCCC----CeEEEecCcc----cCC-C----EEeCCCCE-EEEE
Q 019471 293 YLGSPGSFSE----KYGK----DYFICTGPAA----MLV-P----VVVQAGEK-WKGA 332 (340)
Q Consensus 293 vvWnP~~~~d----~~~~----~~fvCvEP~~----~~~-~----v~L~PGe~-~~~~ 332 (340)
+|++.-.+.+ ..+. ..=+|+||.. .+. + ++|.|||. +...
T Consensus 306 qiYT~n~l~~~~~~~~g~~~~~~~giclE~Q~~PDa~n~~~~fp~~vl~pge~~~~~~ 363 (376)
T PTZ00485 306 WVYTANNKPLPASGGPGQRYARWTGMGLEPQYFPDVANHYPKYPSCIVRRGERRFTET 363 (376)
T ss_pred EEECCCCCCccccCCCCcCcCCCCEEEEeccCCCCcccccCCCCCeEECCCCeEEEEE
Confidence 9999633221 1111 1368999993 233 2 78999998 4433
No 18
>PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A.
Probab=99.02 E-value=3.5e-08 Score=94.01 Aligned_cols=256 Identities=11% Similarity=0.010 Sum_probs=131.1
Q ss_pred CCeeEEEEEeCCCCEEEEec-CCeEEEEecccccccCCCceEEEEecCC-CCCCC--------Cccce----eeee-eee
Q 019471 47 NNIPIVELTVRNGSSVRLSI-PDAHVTSYKPKVEWKDDGFEEVLYTVGG-ADSGA--------KARGG----IGLA-IND 111 (340)
Q Consensus 47 ~g~~~v~l~~~~g~~a~I~~-~GA~v~S~~~~~~w~~~~g~e~L~~~~~-~~~~~--------~irGG----iPvl-fP~ 111 (340)
.|..+++|++..|.+++|.+ .|..|.+.+ + +|.++-|.++. ..... .+-.+ +--| +..
T Consensus 2 ~Gv~~l~i~N~~gl~~~vlp~rg~dI~~~~----~---~G~~l~w~s~~~~~~P~~~~~~~g~~~l~~f~g~l~tcGl~~ 74 (302)
T PF14486_consen 2 RGVRALEIRNGGGLRFTVLPDRGMDIWDAE----F---DGVNLGWHSPFGLVHPAYYDSPGGLGWLRTFGGFLFTCGLDN 74 (302)
T ss_dssp TT-EEEEEEETTS-EEEEETTTTTEEEEEE----E---TTEEE----S-----GGG--HHHHTGGGGT---SEEEEEES-
T ss_pred CCcEEEEEECCCCcEEEEecccCCceEEEE----E---CCEEecccCCCcCCCCccccccCCcchhhcccchheeecccc
Confidence 47889999998788999986 799999986 3 47999998764 11111 11111 1112 223
Q ss_pred cCC----CC---CCCccccCCCeEEEEEcCCCCC--eEEEEE-----cccCCceEEEEEEEE--eCCceEEEEEEEECCC
Q 019471 112 ASE----AG---SKGSLISSSQWTVKDVDSDTID--ALQVEL-----SCTSGALDITYVVSL--YPLSMATAVIVKNNGR 175 (340)
Q Consensus 112 fg~----~g---~~HGfar~~~W~v~~~~~~~~~--~v~~~L-----~~~p~~f~l~~~~tL--~~~~L~~~l~v~N~g~ 175 (340)
+|. +| +.||=..+.+|+.+..+.++++ .+.++= ..+-..+.|+=++++ ..+.++++-+|+|.+.
T Consensus 75 ~G~P~~~~g~~~~LHG~i~~~Pa~~v~~~~~~~~~~~i~v~G~v~~~~~fg~~l~l~r~i~~~~g~~~i~i~d~VtN~~~ 154 (302)
T PF14486_consen 75 NGAPSEDDGETYPLHGRISNTPAEHVWLEIWDGDGYEIEVSGEVREAAGFGENLRLERTIRLRAGSNTIRIEDRVTNLGF 154 (302)
T ss_dssp -SS-EEETTEEE-TTBSGGGS--SEEEEEEESSTT--EEEEEEEEEEETTTEEEEEEEEEEE-TT-SEEEEEEEEEE-SS
T ss_pred CCCCCCcCCccccccccccCCCcceEEEEEecCCCcEEEEEEEEEEEEeccCcEEEEEEEEEECCCcEEEEEEEEEECCC
Confidence 443 12 8999999999987665433222 333321 234456666666665 6779999999999999
Q ss_pred cceeeeeeccceEecCCCC-ceEEecCCCCceecCCCCCCCCccCCcccccccccccccceeeccCeeeeccccceeecC
Q 019471 176 KAVTLTSAILSHLLFKRRN-GTGIRGLKGCSYCKHPPLSSPFELLPPSEAMKNDEKQGIWNVQDVPITVLKDKLSRVYAA 254 (340)
Q Consensus 176 ~~~~f~~g~Hpyf~v~~~~-~~~v~gl~g~~y~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Drvy~~ 254 (340)
.|+|+....|.-|..|..+ ++++.. .......+... ..+. ...|..-.... ...-+.||..
T Consensus 155 ~p~p~m~lyH~N~G~pll~eg~ri~~-p~~~~~~~~~~-----------a~~~---~~~~~~~~~P~---~~~~E~Vy~~ 216 (302)
T PF14486_consen 155 QPMPLMYLYHMNFGYPLLDEGARIVA-PTKEVTPRDDR-----------AAEG---IADWDRMPAPQ---PGFPEQVYFH 216 (302)
T ss_dssp S-EEEEEEEEEEE-TTT-STT-EEE---EEEEEESSGG-----------GGGG---STTTTB---S----TT---EEEEE
T ss_pred CCchhHHhhhhccCccccCCCcEEEc-CcccccCCchh-----------hhcC---CccceecCCCC---CCCCcEEEEe
Confidence 9999999999999998543 344431 11111111110 0000 00111100000 1112234432
Q ss_pred CCcccccccccCCCCeEEEEeCCCCeEEEEEE--cCCceEEEeCCCCCCCCCCCCeEEEecCccc-----------CCCE
Q 019471 255 PPAERSKAFYYTPPSKFETLDQGRELFFRIIR--IGFEDIYLGSPGSFSEKYGKDYFICTGPAAM-----------LVPV 321 (340)
Q Consensus 255 ~~~~~~d~~~~~~~~~~~l~d~~~~~~i~v~~--~gf~~~vvWnP~~~~d~~~~~~fvCvEP~~~-----------~~~v 321 (340)
.... | .+++ ..+.|.++..+..+.+.+ +.|+++.+|-.. .+..+-+.|||+.. ....
T Consensus 217 ~~~~--d--~~G~-~~~~l~n~~~g~g~~v~f~~~~lP~~~~Wk~~-----~~~~yv~gLEP~T~~p~g~~~~~~~G~l~ 286 (302)
T PF14486_consen 217 DLLA--D--EDGW-AHAALVNPDGGLGFEVRFDTSQLPYLTQWKNY-----GGGEYVLGLEPATCRPEGRAAAREAGTLP 286 (302)
T ss_dssp EE-------TTSE-EEEEEE-SSSS-EEEEEEETTTS-EEEEEEEE-----S-T-EEEEEEEESS-SS-HHHHHHTT--E
T ss_pred cccc--c--CCCc-EEEEEECCCCCcEEEEEEchHHCChhHhheeC-----CCCEeEEEEecccCCCCCHHHHHhCCCcc
Confidence 1000 0 0111 237888888778888887 579999999651 11235678999942 2238
Q ss_pred EeCCCCEEEEEEEEEe
Q 019471 322 VVQAGEKWKGAQVIEH 337 (340)
Q Consensus 322 ~L~PGe~~~~~~~I~~ 337 (340)
.|+|||+.+.+.+++|
T Consensus 287 ~L~pge~~~~~l~~~v 302 (302)
T PF14486_consen 287 MLAPGESREFSLEFGV 302 (302)
T ss_dssp EE-TT-EEEEEEEEE-
T ss_pred eECCCCeEEEEEEecC
Confidence 9999999999998875
No 19
>KOG1604 consensus Predicted mutarotase [Carbohydrate transport and metabolism]
Probab=98.86 E-value=2.4e-06 Score=80.70 Aligned_cols=267 Identities=15% Similarity=0.123 Sum_probs=141.8
Q ss_pred eCCeeEEEEEeCCCCEEEEecCCeEEEEecccccccCCCc--e-EEE-EecCC-CCC-CCCccce---------------
Q 019471 46 SNNIPIVELTVRNGSSVRLSIPDAHVTSYKPKVEWKDDGF--E-EVL-YTVGG-ADS-GAKARGG--------------- 104 (340)
Q Consensus 46 ~~g~~~v~l~~~~g~~a~I~~~GA~v~S~~~~~~w~~~~g--~-e~L-~~~~~-~~~-~~~irGG--------------- 104 (340)
...+..++|.+.+|.+|+|..+||.|+|++- .++.| . -+| |-+-+ +.. .++.-|.
T Consensus 17 ~~~~~~~tl~n~~~l~vti~~~GATi~sL~v----pd~~gk~~DVVLGfd~v~gY~~~~~~yfGatvGRvANRI~~G~F~ 92 (353)
T KOG1604|consen 17 KQTIRVYTLGNGKGLQVTIINLGATITSLKV----PDKSGKLDDVVLGFDDVDGYLKDDAAYFGATVGRVANRIAKGKFS 92 (353)
T ss_pred cCceEEEEecCCCeeEEEEeeCCcEEEEEEc----CCcCCcccceEecccchhhhccCCcceecceehhhhhhcccceEE
Confidence 3456678899988889999999999999973 22221 2 233 22212 222 2121111
Q ss_pred ---eeeeeeecCCCC-CCC----ccccCCCeEEEEEcCCCCCeE-EEEE------cccCCceEEEEEEEEeC-CceEEEE
Q 019471 105 ---IGLAINDASEAG-SKG----SLISSSQWTVKDVDSDTIDAL-QVEL------SCTSGALDITYVVSLYP-LSMATAV 168 (340)
Q Consensus 105 ---iPvlfP~fg~~g-~~H----Gfar~~~W~v~~~~~~~~~~v-~~~L------~~~p~~f~l~~~~tL~~-~~L~~~l 168 (340)
-+.-...-. ++ ..| ||-+ .-|++..+..+ ++ ++.. .-+|.+.+++++|+|.+ +.|.+.+
T Consensus 93 ldgk~y~lt~N~-g~n~lHgg~~gf~~-~~w~v~~~~~~---~~i~f~~~s~dg~eg~PG~l~V~vtYtLn~~n~l~i~~ 167 (353)
T KOG1604|consen 93 LDGKPYKLTVNN-GKNTLHGGIKGFDK-VIWEVVKHQPD---GVIVFSHLSPDGDEGFPGDLKVTVTYTLNVANRLLIMM 167 (353)
T ss_pred ECCceEEecccC-CCccccCCcccccc-eEEEEEEecCC---CEEEEEEECCCCCCCCCccEEEEEEEEEccCCeeeeee
Confidence 111111110 11 344 4543 55999998766 44 4443 23789999999999987 6777777
Q ss_pred EEEECCCcceeeeeeccceEecCCC-----CceEEecCCCCceecCCCCCCCCccCCcccccccccccccce---eeccC
Q 019471 169 IVKNNGRKAVTLTSAILSHLLFKRR-----NGTGIRGLKGCSYCKHPPLSSPFELLPPSEAMKNDEKQGIWN---VQDVP 240 (340)
Q Consensus 169 ~v~N~g~~~~~f~~g~Hpyf~v~~~-----~~~~v~gl~g~~y~d~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~ 240 (340)
..+=. +++=|+.+.-|+||++... .+..++ +++..+.+-.. .++|+++-..+.....++. .-++.
T Consensus 168 ~A~~~-~~~TPiNLtnHsYfNL~g~~s~~I~~heI~-i~a~~~~evd~-----~~iPTG~I~~v~~t~fD~r~p~~lgd~ 240 (353)
T KOG1604|consen 168 EATAL-DKATPINLTNHSYFNLAGHNSGGIEGHEIQ-IEASKITEVDD-----TLIPTGEITPVKGTTFDFRKPTVLGDR 240 (353)
T ss_pred hhhcc-CCCcceeeccceeEeccCCCCCCccceEEE-EeecccEecCC-----ccccccceEeccCccccccCCeecccc
Confidence 66544 7889999999999998753 222332 23333332211 1132222111111101110 00111
Q ss_pred eeeec--cccceeec--CCCcccccccccCCCCeEEEEeCCCCeEEEEEEcCCceEEEeCCCCCCCCCCCC-------eE
Q 019471 241 ITVLK--DKLSRVYA--APPAERSKAFYYTPPSKFETLDQGRELFFRIIRIGFEDIYLGSPGSFSEKYGKD-------YF 309 (340)
Q Consensus 241 ~~~~~--~~~Drvy~--~~~~~~~d~~~~~~~~~~~l~d~~~~~~i~v~~~gf~~~vvWnP~~~~d~~~~~-------~f 309 (340)
...+. ...|..|- +..+. +.....+.+.++.+++.+.|.. +-|-+-+++-.-+.|..++. .+
T Consensus 241 ~~~~~~i~g~d~n~~~~~~~~~------~~l~~v~k~~hp~Sgr~lEv~T-nqPgvqfYTgn~~~~~~gk~g~~y~k~g~ 313 (353)
T KOG1604|consen 241 IKQFECIVGYDINYVLDGSVPP------NKLRKVAKAVHPKSGRKLEVST-NQPGVQFYTGNFLPDIKGKKGAVYPKHGG 313 (353)
T ss_pred ccccccccCCCcceEEccCCCC------cccEEEEEEEcCccCcEEEEEe-CCCcEEEEeccccccccCCCceEeeccce
Confidence 11122 11222221 00000 0111346778888898888876 44666677632233333321 49
Q ss_pred EEecCcc----cCC---C-EEeCCCCEEEEEEEE
Q 019471 310 ICTGPAA----MLV---P-VVVQAGEKWKGAQVI 335 (340)
Q Consensus 310 vCvEP~~----~~~---~-v~L~PGe~~~~~~~I 335 (340)
+|+|+.. .+. | +.|.|||+..-.+..
T Consensus 314 ~cletq~~pda~n~~~fp~v~l~pGE~Y~h~~~y 347 (353)
T KOG1604|consen 314 LCLETQYFPDAVNHPNFPSVILRPGETYTHETVY 347 (353)
T ss_pred EEeecccCccccccCCCCceEecCCCeeeeEEEE
Confidence 9999963 332 2 999999977655543
No 20
>cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like. Salmonella enterica serovar Typhi DeoM (earlier named as DeoX) is a mutarotase with high specificity for deoxyribose. It is encoded by one of four genes beonging to the deoK operon. This operon has also been found in Escherichia coli where it is more common in pathogenic than in commensal strains and is associated with pathogenicity. It has been found on a pathogenicity island from a human blood isolate AL863 and confers the ability to use deoxyribose as a carbon source; deoxyribose is not fermented by non-pathogenic E.coli K-12. Proteins in this family are members of the aldose-1-epimerase superfamily. Aldose 1-epimerases, or mutarotases, are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechani
Probab=98.82 E-value=3.5e-07 Score=86.81 Aligned_cols=73 Identities=11% Similarity=-0.027 Sum_probs=57.3
Q ss_pred CCCccccCCCeEE----EEEcCCCCCeEEEEE-----cccCCceEEEEEEEEeC--CceEEEEEEEECCCcceeeeeecc
Q 019471 117 SKGSLISSSQWTV----KDVDSDTIDALQVEL-----SCTSGALDITYVVSLYP--LSMATAVIVKNNGRKAVTLTSAIL 185 (340)
Q Consensus 117 ~~HGfar~~~W~v----~~~~~~~~~~v~~~L-----~~~p~~f~l~~~~tL~~--~~L~~~l~v~N~g~~~~~f~~g~H 185 (340)
+.||=..+..|+. +..+++ ...++++- ..|+++|+++-+|+|.. +.|+++++|+|.|+.|||+.+++|
T Consensus 63 ~LHG~~~~~p~~~~w~~~~~d~~-~~~l~l~g~~~~~~~fg~~y~a~~~i~L~~g~~~l~i~~~VtN~g~~p~p~~~~~H 141 (293)
T cd09269 63 PLHGEFPCAPMDEAWLEVGEDAS-GDYLALTGEYEYVQGFGHHYLAQPSVTLRAGSALFDIGMDVTNLSAQPMPLMYMCH 141 (293)
T ss_pred CCcCCcCCCCccceEEEEEecCC-CCEEEEEEEEEeeeccCccEEEEEEEEEeCCCCEEEEEEEEEECCCCCChhhEecc
Confidence 8999955555554 433322 22444433 25799999999999997 899999999999999999999999
Q ss_pred ceEec
Q 019471 186 SHLLF 190 (340)
Q Consensus 186 pyf~v 190 (340)
++|..
T Consensus 142 ~nfg~ 146 (293)
T cd09269 142 MNYAY 146 (293)
T ss_pred cccCC
Confidence 99986
No 21
>PF14315 DUF4380: Domain of unknown function (DUF4380)
Probab=96.36 E-value=0.14 Score=48.26 Aligned_cols=129 Identities=12% Similarity=0.119 Sum_probs=78.2
Q ss_pred eeEEEEEeCCCCEEEEec-CCeEEEEecccccccCCCceEEEEecCC-----CC---CCCCccceeeeee--eecC-CC-
Q 019471 49 IPIVELTVRNGSSVRLSI-PDAHVTSYKPKVEWKDDGFEEVLYTVGG-----AD---SGAKARGGIGLAI--NDAS-EA- 115 (340)
Q Consensus 49 ~~~v~l~~~~g~~a~I~~-~GA~v~S~~~~~~w~~~~g~e~L~~~~~-----~~---~~~~irGGiPvlf--P~fg-~~- 115 (340)
..+++|++ +..++.|.. .|+-|++|. -.++..+||.... .. ..-...||- -+| |+-. +.
T Consensus 4 ~~~~~l~N-~~i~l~Vtp~~GgRIl~~~------~~g~~N~~~~~~~~~~~~~~~~~~~~~~~GGh-rlW~~Pe~~~r~~ 75 (274)
T PF14315_consen 4 GNCLRLSN-GDIELIVTPDVGGRILSFG------LNGGENLFGEANEIQPAPGVSGDSGWINYGGH-RLWPSPENPPRTS 75 (274)
T ss_pred ceEEEEEC-CCEEEEEecCCCCEEEEEE------eCCCceEEeeccccccccccCCcccccCCCcc-eeecCCCCccccc
Confidence 35889998 346888875 799999986 2357778855432 11 111233333 344 2200 00
Q ss_pred ---CCCCccccCCCeEEEEEcCCCCCeEEEEEcccCC-ceEEEEEEEEeCCc--eEEEEEEEECCCcceeeeeeccceEe
Q 019471 116 ---GSKGSLISSSQWTVKDVDSDTIDALQVELSCTSG-ALDITYVVSLYPLS--MATAVIVKNNGRKAVTLTSAILSHLL 189 (340)
Q Consensus 116 ---g~~HGfar~~~W~v~~~~~~~~~~v~~~L~~~p~-~f~l~~~~tL~~~~--L~~~l~v~N~g~~~~~f~~g~Hpyf~ 189 (340)
.+---+.-+..|++.. +++ .|.++-...|. .++++.+|+|.+++ ++++.+++|.++.++++++=.-+-++
T Consensus 76 ~~~~~Pd~~ld~~p~~~~~-~~~---~v~L~s~~~~~tgiq~~~~i~l~~~~~~i~v~~~i~N~~~~~~~~a~W~~t~~~ 151 (274)
T PF14315_consen 76 KWVWPPDPVLDNGPYEVEI-DDD---GVRLTSPPSPKTGIQKERTITLDADRPSIEVTHRITNIGDWPVEWAPWSVTQVP 151 (274)
T ss_pred cccCCCcccccCCceeEEE-cCC---EEEEecCCCCccCcEEEEEEEECCCCCEEEEEEEEEeCCCCcceeeeeeeeEEc
Confidence 0000122246677766 322 55555444454 58999999999887 99999999999999886655444443
No 22
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=89.52 E-value=13 Score=36.25 Aligned_cols=118 Identities=17% Similarity=0.164 Sum_probs=66.0
Q ss_pred eeEEEEEeCCCCEEEEecCCeEEEEecccccccC---CCceEE-EEecCCCCCCCCccceeeeeee----ecCCCCC-CC
Q 019471 49 IPIVELTVRNGSSVRLSIPDAHVTSYKPKVEWKD---DGFEEV-LYTVGGADSGAKARGGIGLAIN----DASEAGS-KG 119 (340)
Q Consensus 49 ~~~v~l~~~~g~~a~I~~~GA~v~S~~~~~~w~~---~~g~e~-L~~~~~~~~~~~irGGiPvlfP----~fg~~g~-~H 119 (340)
...|+|+++ -.+++|...||.|.++..+- .+. .+...+ |-.. +....|+ +.+.+++ .-
T Consensus 73 ~~~i~v~td-~~~~~is~~Gg~i~~~~Lk~-y~~~~~~~~~pv~L~~~-----------~~~~~y~~~~gl~~~~~~~~~ 139 (366)
T TIGR03593 73 AKRITVKTD-VLRASISTKGGDIDSLELKK-YKETLDKDSPPVLLLSD-----------GAERLYVAQSGLIGANGADLA 139 (366)
T ss_pred CCeEEEECC-eEEEEEeCCCceeeeecccc-CccccCCCCCcEEeecC-----------CCCceeEEEeccccCCCCccc
Confidence 346788884 47999999999999986321 110 011112 2111 1122233 1111111 11
Q ss_pred ccccCCCeEEEEEc--CCCCCeEEEEEccc-CCceEEEEEEEEeCC--ceEEEEEEEECCCcceee
Q 019471 120 SLISSSQWTVKDVD--SDTIDALQVELSCT-SGALDITYVVSLYPL--SMATAVIVKNNGRKAVTL 180 (340)
Q Consensus 120 Gfar~~~W~v~~~~--~~~~~~v~~~L~~~-p~~f~l~~~~tL~~~--~L~~~l~v~N~g~~~~~f 180 (340)
-...+..|+....+ -. ++...+.|+.. .....++.+|++.++ .+.++++|+|.++.++..
T Consensus 140 ~~~~~~~~~~~~~~~~l~-~~~~~v~l~~~~~~G~~v~k~ytf~~~sY~i~v~~~v~N~~~~~~~~ 204 (366)
T TIGR03593 140 LPGHRTVWQAEGGEYTLT-PGQLPVTLTWDNSNGVTVTKTYTFDRDSYLIDVEYKVTNNGDAPVSL 204 (366)
T ss_pred CCCCCceEEeCCCceeeC-CCCEEEEEEEECCCCeEEEEEEEEeCCeEEEEeEEEEEeCCCCCeeE
Confidence 12456678886431 11 11233444321 456899999999987 688889999999887663
No 23
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B.
Probab=86.43 E-value=7.1 Score=36.08 Aligned_cols=119 Identities=16% Similarity=0.119 Sum_probs=55.0
Q ss_pred EEEEeCCCCEEEEecCCeEEEEeccccc--ccCCCc--eEEEEecCCCCCCCCccceeeeeeeecCCC-C-CCCccccCC
Q 019471 52 VELTVRNGSSVRLSIPDAHVTSYKPKVE--WKDDGF--EEVLYTVGGADSGAKARGGIGLAINDASEA-G-SKGSLISSS 125 (340)
Q Consensus 52 v~l~~~~g~~a~I~~~GA~v~S~~~~~~--w~~~~g--~e~L~~~~~~~~~~~irGGiPvlfP~fg~~-g-~~HGfar~~ 125 (340)
|+|+++ -.+++|...||.|.|++.+-+ ..+.++ .+++-..+ .- .-|.-|.+.-.. + ...- ++.
T Consensus 2 v~ven~-~~~~~~s~~GG~i~~~~Lk~y~~~~~~~~~pv~L~~~~~------~~--~~~~~~~l~~~~~~~~~~~--~~~ 70 (270)
T PF14849_consen 2 VTVEND-LFKVTFSSKGGRIKSVELKKYKNTLDPDSKPVELVDDSD------EE--NYPLAFGLVFNTGGAQLPT--NDL 70 (270)
T ss_dssp EEEE-S-S-EEEEETBTTEEEEEEEEEEESSTT-SS-EEEECEEET------TE--EEEEEEEEESTT--TTSGG--S--
T ss_pred EEEECC-CEEEEEECCCCeEEEEEcCCCccccCCCCCceEEecCCC------Cc--ceEEEEcccccCccccCCC--ccc
Confidence 577774 379999999999999863210 001111 12221111 00 012333332211 1 1111 677
Q ss_pred CeEEEEEc-----CCCCCeEEEEEcccCCceEEEEEEEEeCC--ceEEEEEEEECCCcceeeee
Q 019471 126 QWTVKDVD-----SDTIDALQVELSCTSGALDITYVVSLYPL--SMATAVIVKNNGRKAVTLTS 182 (340)
Q Consensus 126 ~W~v~~~~-----~~~~~~v~~~L~~~p~~f~l~~~~tL~~~--~L~~~l~v~N~g~~~~~f~~ 182 (340)
.|++...+ ......++++...- -.+.++.+|+|.++ .+.++++++|.+..+.....
T Consensus 71 ~f~~~~~~~~l~~~~~~~~vtf~~~~~-~g~~i~k~ytf~~~~Y~~~~~i~~~n~~~~~~~~~~ 133 (270)
T PF14849_consen 71 YFSVSQKSYTLKEGGDSQSVTFTAQLG-NGLTITKTYTFKPDSYLVDLEISVTNLSDQPVSLSP 133 (270)
T ss_dssp B-B-S-SEEE--TT-SEEEEEEEEE-T-TS-EEEEEEEEETT--EEEEEEEEE--SSS-EEEEE
T ss_pred eEEEcCCceeeccCCCceEEEEEEECC-CCEEEEEEEEEcCCcEEEEEEEEEECCCCCccccce
Confidence 78887631 11112444444433 34899999999966 57777778899888777643
No 24
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=84.95 E-value=1.1 Score=35.35 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=24.1
Q ss_pred EEEEeCCceEEEEEEEECCCcceeeeeeccceE
Q 019471 156 VVSLYPLSMATAVIVKNNGRKAVTLTSAILSHL 188 (340)
Q Consensus 156 ~~tL~~~~L~~~l~v~N~g~~~~~f~~g~Hpyf 188 (340)
.++|.....+++++|.|+|+.|+.++ -|-+|
T Consensus 12 ~IelN~gr~~~~i~V~NtGDRPIQVG--SHfHF 42 (106)
T COG0832 12 DIELNAGRPTVTIEVANTGDRPIQVG--SHFHF 42 (106)
T ss_pred cEEEeCCCcceEEEEeecCCCceEee--cceee
Confidence 46677788999999999999987665 45444
No 25
>PRK01318 membrane protein insertase; Provisional
Probab=83.37 E-value=25 Score=36.29 Aligned_cols=122 Identities=14% Similarity=0.093 Sum_probs=62.4
Q ss_pred EEEEEeCCCCEEEEecCCeEEEEecccccccCCCc--eEE-EEecCCCCCCCCccceeeeeeeecCCCCCCCcccc-CCC
Q 019471 51 IVELTVRNGSSVRLSIPDAHVTSYKPKVEWKDDGF--EEV-LYTVGGADSGAKARGGIGLAINDASEAGSKGSLIS-SSQ 126 (340)
Q Consensus 51 ~v~l~~~~g~~a~I~~~GA~v~S~~~~~~w~~~~g--~e~-L~~~~~~~~~~~irGGiPvlfP~fg~~g~~HGfar-~~~ 126 (340)
.++++++ -.+++|.+.||.|.++..+- .+...+ .++ |. +.. .-..-+.-+=+.+.+++.+--.. +..
T Consensus 40 ~i~v~td-~~~~~is~~Gg~i~~~~Lk~-y~~~~~~~~p~~L~-----~~~--~~~~y~~~~g~~~~~~~~~~~~~~~~~ 110 (521)
T PRK01318 40 RITVETD-VLRLSIDTKGGRIDDLLLKK-YKETLDSSPPVVLL-----SPS--TEHPYFAQSGLTGADGPDNVPNPDRTL 110 (521)
T ss_pred EEEEEcC-cEEEEEECCCCeeeeeeccC-CccccCCCCCEEEe-----cCC--CCcceeeeeccccCCCcccccCCCCcc
Confidence 6777773 37899999999999986321 111111 111 11 111 00011222222222221111111 456
Q ss_pred eEEEEEcCC---CCCeEEEEEcc-cCCceEEEEEEEEeCCc--eEEEEEEEECCCcceeee
Q 019471 127 WTVKDVDSD---TIDALQVELSC-TSGALDITYVVSLYPLS--MATAVIVKNNGRKAVTLT 181 (340)
Q Consensus 127 W~v~~~~~~---~~~~v~~~L~~-~p~~f~l~~~~tL~~~~--L~~~l~v~N~g~~~~~f~ 181 (340)
|+.....-+ .++...+.++. .+..+.++.+|++.+++ ++++++|+|.+..++...
T Consensus 111 ~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~k~yt~~~~~Y~~~~~~~v~n~~~~~~~~~ 171 (521)
T PRK01318 111 YTADGDSLVLADGQNELPVTLTWTNGNGLTFTKTYTLDRGDYMFTVEYSVNNNSGAPVNLS 171 (521)
T ss_pred eeecccceeeccCCCceEEEEEEECCCCeEEEEEEEEcCCceEEEEEEEEEcCCCCceeee
Confidence 776521110 11233344432 23568889999998764 888899999887765543
No 26
>PRK13203 ureB urease subunit beta; Reviewed
Probab=81.29 E-value=2 Score=34.19 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=23.0
Q ss_pred EEEeCCceEEEEEEEECCCcceeeeeeccceE
Q 019471 157 VSLYPLSMATAVIVKNNGRKAVTLTSAILSHL 188 (340)
Q Consensus 157 ~tL~~~~L~~~l~v~N~g~~~~~f~~g~Hpyf 188 (340)
+.|....=+++++|+|+|+.|+.++ -|-+|
T Consensus 13 I~ln~gr~~~~l~V~NtGDRPIQVG--SH~HF 42 (102)
T PRK13203 13 IELNAGRETVTLTVANTGDRPIQVG--SHYHF 42 (102)
T ss_pred EEeCCCCCEEEEEEEeCCCCceEEc--cccch
Confidence 5567777889999999999977655 45444
No 27
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=81.22 E-value=2 Score=34.06 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=23.2
Q ss_pred EEEeCCceEEEEEEEECCCcceeeeeeccceE
Q 019471 157 VSLYPLSMATAVIVKNNGRKAVTLTSAILSHL 188 (340)
Q Consensus 157 ~tL~~~~L~~~l~v~N~g~~~~~f~~g~Hpyf 188 (340)
++|..+.=++++.|+|+|+.|+.++ -|-+|
T Consensus 13 I~ln~gr~~~~l~V~NtGDRPIQVG--SHyHF 42 (101)
T TIGR00192 13 ITINEGRKTVSVKVKNTGDRPIQVG--SHFHF 42 (101)
T ss_pred EEeCCCCcEEEEEEEeCCCcceEEc--cccch
Confidence 5577777899999999999977655 45555
No 28
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=81.09 E-value=2 Score=34.11 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=23.2
Q ss_pred EEEeCCceEEEEEEEECCCcceeeeeeccceE
Q 019471 157 VSLYPLSMATAVIVKNNGRKAVTLTSAILSHL 188 (340)
Q Consensus 157 ~tL~~~~L~~~l~v~N~g~~~~~f~~g~Hpyf 188 (340)
++|..+.=+++++|+|+|+.|+.++ -|-+|
T Consensus 13 I~lN~gr~~~~l~V~NtGDRpIQVG--SH~HF 42 (101)
T cd00407 13 IELNAGREAVTLKVKNTGDRPIQVG--SHYHF 42 (101)
T ss_pred eEeCCCCCEEEEEEEeCCCcceEEc--cccch
Confidence 5577777899999999999977655 45555
No 29
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=80.29 E-value=1.7 Score=34.39 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=21.4
Q ss_pred EEEeCCceEEEEEEEECCCcceeeeeeccceEe
Q 019471 157 VSLYPLSMATAVIVKNNGRKAVTLTSAILSHLL 189 (340)
Q Consensus 157 ~tL~~~~L~~~l~v~N~g~~~~~f~~g~Hpyf~ 189 (340)
++|....=+++++|+|+|+.|+.+ |-|-+|.
T Consensus 12 I~lN~gr~~~~l~V~N~GDRPIQV--GSH~HF~ 42 (100)
T PF00699_consen 12 IELNAGRERITLEVTNTGDRPIQV--GSHYHFF 42 (100)
T ss_dssp EETTTTSEEEEEEEEE-SSS-EEE--ETTS-GG
T ss_pred EEecCCCcEEEEEEEeCCCcceEE--ccccCHH
Confidence 556777889999999999997655 5565553
No 30
>PRK13202 ureB urease subunit beta; Reviewed
Probab=77.54 E-value=3.1 Score=33.15 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=22.0
Q ss_pred EEEeCCc-eEEEEEEEECCCcceeeeeeccceE
Q 019471 157 VSLYPLS-MATAVIVKNNGRKAVTLTSAILSHL 188 (340)
Q Consensus 157 ~tL~~~~-L~~~l~v~N~g~~~~~f~~g~Hpyf 188 (340)
++|.... =+++++|+|+|+.|+.++ -|-+|
T Consensus 13 I~ln~grr~~~~l~V~NtGDRPIQVG--SHyHF 43 (104)
T PRK13202 13 IEMNAAALSRLQMRIINAGDRPVQVG--SHVHL 43 (104)
T ss_pred EEeCCCCCceEEEEEEeCCCCceEEc--cccch
Confidence 5566663 689999999999977655 45555
No 31
>PRK13201 ureB urease subunit beta; Reviewed
Probab=76.93 E-value=3 Score=34.67 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=22.5
Q ss_pred EEEeCCceEEEEEEEECCCcceeeeeecc
Q 019471 157 VSLYPLSMATAVIVKNNGRKAVTLTSAIL 185 (340)
Q Consensus 157 ~tL~~~~L~~~l~v~N~g~~~~~f~~g~H 185 (340)
++|....=++++.|+|+|+.|+.++-=+|
T Consensus 13 I~lN~gr~~~~l~V~NtGDRPIQVGSHyH 41 (136)
T PRK13201 13 VEINNHHPETVIEVENTGDRPIQVGSHFH 41 (136)
T ss_pred eEeCCCCCEEEEEEEeCCCcceEeccccc
Confidence 55777778899999999999876654444
No 32
>PRK13198 ureB urease subunit beta; Reviewed
Probab=75.05 E-value=3.5 Score=35.10 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=23.0
Q ss_pred EEEeCCceEEEEEEEECCCcceeeeeecc
Q 019471 157 VSLYPLSMATAVIVKNNGRKAVTLTSAIL 185 (340)
Q Consensus 157 ~tL~~~~L~~~l~v~N~g~~~~~f~~g~H 185 (340)
+.|....=++++.|+|+|+.|+.++-=+|
T Consensus 41 I~lN~gr~~~~l~V~NtGDRPIQVGSHyH 69 (158)
T PRK13198 41 ITFNENKPVTKVKVRNTGDRPIQVGSHFH 69 (158)
T ss_pred eEeCCCCcEEEEEEEeCCCCceEeccccc
Confidence 66777788999999999999876654444
No 33
>PRK13205 ureB urease subunit beta; Reviewed
Probab=75.02 E-value=3.5 Score=35.05 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=23.1
Q ss_pred EEEeCCceEEEEEEEECCCcceeeeeeccceE
Q 019471 157 VSLYPLSMATAVIVKNNGRKAVTLTSAILSHL 188 (340)
Q Consensus 157 ~tL~~~~L~~~l~v~N~g~~~~~f~~g~Hpyf 188 (340)
+.|....=+++|+|+|+|+.|+.++ -|-+|
T Consensus 13 IelN~GR~~i~L~V~NtGDRPIQVG--SHyHF 42 (162)
T PRK13205 13 LTGNVGREAKTIEIINTGDRPVQIG--SHFHF 42 (162)
T ss_pred eEeCCCCcEEEEEEEeCCCCceEec--cccch
Confidence 5577777899999999999977655 45545
No 34
>PRK13204 ureB urease subunit beta; Reviewed
Probab=74.88 E-value=3.6 Score=35.07 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=22.9
Q ss_pred EEEeCCceEEEEEEEECCCcceeeeeecc
Q 019471 157 VSLYPLSMATAVIVKNNGRKAVTLTSAIL 185 (340)
Q Consensus 157 ~tL~~~~L~~~l~v~N~g~~~~~f~~g~H 185 (340)
++|....=+++++|+|+|+.|+.++-=+|
T Consensus 36 I~lN~gr~~~~l~V~NtGDRPIQVGSHyH 64 (159)
T PRK13204 36 IEINQGRPRTTLTVRNTGDRPIQIGSHFH 64 (159)
T ss_pred eEeCCCCcEEEEEEEeCCCCceEeccccc
Confidence 56777788999999999999876654444
No 35
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=64.25 E-value=7.3 Score=34.86 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=23.3
Q ss_pred EEEeCCceEEEEEEEECCCcceeeeeeccceE
Q 019471 157 VSLYPLSMATAVIVKNNGRKAVTLTSAILSHL 188 (340)
Q Consensus 157 ~tL~~~~L~~~l~v~N~g~~~~~f~~g~Hpyf 188 (340)
+.|..+.=+++++|+|+|+.|+.++ -|-+|
T Consensus 122 I~lN~gr~~~~l~V~NtGDRPIQVG--SHyHF 151 (208)
T PRK13192 122 IELNAGRPAVTLDVTNTGDRPIQVG--SHFHF 151 (208)
T ss_pred eeeCCCCCEEEEEEEeCCCCceeec--cccch
Confidence 5677777899999999999977655 45444
No 36
>PRK13986 urease subunit alpha; Provisional
Probab=61.94 E-value=8.1 Score=34.99 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=23.2
Q ss_pred EEEeCCceEEEEEEEECCCcceeeeeeccceE
Q 019471 157 VSLYPLSMATAVIVKNNGRKAVTLTSAILSHL 188 (340)
Q Consensus 157 ~tL~~~~L~~~l~v~N~g~~~~~f~~g~Hpyf 188 (340)
+.|..+.=+++++|+|+|+.|+.++ -|-+|
T Consensus 118 I~lN~gr~~~~l~V~NtGDRPIQVG--SHyHF 147 (225)
T PRK13986 118 ITINAGKKAVSVKVKNVGDRPVQVG--SHFHF 147 (225)
T ss_pred eecCCCCcEEEEEEEeCCCCceeec--cccch
Confidence 5577777899999999999977655 45555
No 37
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=55.67 E-value=27 Score=26.65 Aligned_cols=38 Identities=24% Similarity=0.142 Sum_probs=28.4
Q ss_pred CCceEEEEEEEEeCCceEEEEEEEECCCcceeeeeeccce
Q 019471 148 SGALDITYVVSLYPLSMATAVIVKNNGRKAVTLTSAILSH 187 (340)
Q Consensus 148 p~~f~l~~~~tL~~~~L~~~l~v~N~g~~~~~f~~g~Hpy 187 (340)
|+.++++..|. ...-.+.|++.|.|.+++.|++--+.|
T Consensus 6 ~~~~~v~~~~~--~~~g~l~l~l~N~g~~~~~~~v~~~~y 43 (89)
T PF05506_consen 6 PYAPEVTARYD--PATGNLRLTLSNPGSAAVTFTVYDNAY 43 (89)
T ss_pred CCCCEEEEEEE--CCCCEEEEEEEeCCCCcEEEEEEeCCc
Confidence 55666666654 444488999999999999998877666
No 38
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=50.55 E-value=18 Score=35.41 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.0
Q ss_pred EEEEeCCceEEEEEEEECCCcceeeee
Q 019471 156 VVSLYPLSMATAVIVKNNGRKAVTLTS 182 (340)
Q Consensus 156 ~~tL~~~~L~~~l~v~N~g~~~~~f~~ 182 (340)
+|.+-+.+|+++++|+|.|++|+.++-
T Consensus 257 ~Y~vpgR~l~~~l~VtN~g~~pv~Lge 283 (381)
T PF04744_consen 257 TYRVPGRTLTMTLTVTNNGDSPVRLGE 283 (381)
T ss_dssp EEESSSSEEEEEEEEEEESSS-BEEEE
T ss_pred EEecCCcEEEEEEEEEcCCCCceEeee
Confidence 577889999999999999999987664
No 39
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=46.71 E-value=25 Score=26.71 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=14.7
Q ss_pred ceEEEEEEEECCCcceeeee
Q 019471 163 SMATAVIVKNNGRKAVTLTS 182 (340)
Q Consensus 163 ~L~~~l~v~N~g~~~~~f~~ 182 (340)
++.+.++|+|.+++++.+.+
T Consensus 1 ~v~~~l~v~N~s~~~v~l~f 20 (82)
T PF12690_consen 1 QVEFTLTVTNNSDEPVTLQF 20 (82)
T ss_dssp -EEEEEEEEE-SSS-EEEEE
T ss_pred CEEEEEEEEeCCCCeEEEEe
Confidence 47889999999999988764
No 40
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=45.49 E-value=24 Score=34.56 Aligned_cols=33 Identities=12% Similarity=0.265 Sum_probs=26.6
Q ss_pred ceEEEE---EEEEeCCceEEEEEEEECCCcceeeee
Q 019471 150 ALDITY---VVSLYPLSMATAVIVKNNGRKAVTLTS 182 (340)
Q Consensus 150 ~f~l~~---~~tL~~~~L~~~l~v~N~g~~~~~f~~ 182 (340)
...+++ +|.+-+..|+++++|+|.|++|+.++-
T Consensus 267 ~V~~kv~~a~Y~VPGR~l~~~~~VTN~g~~~vrlgE 302 (399)
T TIGR03079 267 PVSINVTKANYDVPGRALRVTMEITNNGDQVISIGE 302 (399)
T ss_pred ceEEEEeccEEecCCcEEEEEEEEEcCCCCceEEEe
Confidence 345554 478889999999999999999987653
No 41
>PF14742 GDE_N_bis: N-terminal domain of (some) glycogen debranching enzymes
Probab=39.34 E-value=2.1e+02 Score=25.18 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=31.4
Q ss_pred CCceEEEEEEEEeCCceEEEEEEEECCCcceeeeeecc
Q 019471 148 SGALDITYVVSLYPLSMATAVIVKNNGRKAVTLTSAIL 185 (340)
Q Consensus 148 p~~f~l~~~~tL~~~~L~~~l~v~N~g~~~~~f~~g~H 185 (340)
...+.++-+-.|.++ |.-+++++|.+.+|+.+.+.++
T Consensus 78 ~~~l~l~R~r~v~~~-~~E~l~l~N~~~~pv~~~l~l~ 114 (194)
T PF14742_consen 78 DGTLHLRRERFVGGG-LYERLTLTNYSPEPVELTLSLE 114 (194)
T ss_pred CCeEEEEEEEEECCC-CEEEEEEEeCCCCCEEEEEEEE
Confidence 456777777788887 9999999999999999888765
No 42
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=32.14 E-value=1e+02 Score=25.20 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=26.2
Q ss_pred CCceEEEEEEEECCCcceeeeeeccceEe
Q 019471 161 PLSMATAVIVKNNGRKAVTLTSAILSHLL 189 (340)
Q Consensus 161 ~~~L~~~l~v~N~g~~~~~f~~g~Hpyf~ 189 (340)
+..-++++.|+|.+++++.|.+..++.+.
T Consensus 26 ~q~~~l~v~i~N~s~~~~tv~v~~~~A~T 54 (121)
T PF06030_consen 26 GQKQTLEVRITNNSDKEITVKVSANTATT 54 (121)
T ss_pred CCEEEEEEEEEeCCCCCEEEEEEEeeeEe
Confidence 45778999999999999999999999986
No 43
>KOG3150 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.02 E-value=61 Score=27.97 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=29.5
Q ss_pred EEEEEEcCCceEEEeCCCC--------------------CCCCCCCCeEEEecCcccCCC---EEeCCC
Q 019471 281 FFRIIRIGFEDIYLGSPGS--------------------FSEKYGKDYFICTGPAAMLVP---VVVQAG 326 (340)
Q Consensus 281 ~i~v~~~gf~~~vvWnP~~--------------------~~d~~~~~~fvCvEP~~~~~~---v~L~PG 326 (340)
.|..+++-||+.+||+|=. +-|+.| .+|||..-.+...| ..|.|.
T Consensus 18 ~id~k~~rfPyCIVWTPiPvltWl~PfIGHmGic~s~GVIrDFAG-pyfV~eDnmaFG~paRY~ql~p~ 85 (182)
T KOG3150|consen 18 EIDPKRSRFPYCIVWTPIPVLTWLFPFIGHMGICRSDGVIRDFAG-PYFVSEDNMAFGPPARYIQLDPE 85 (182)
T ss_pred ccCcccCCCCeEEEecChHHHHHHHhhccceeeecCCCeEEeccC-CceeeccccccCCcceeEEeChh
Confidence 4666677899999999931 123223 25999988876554 555553
No 44
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=27.83 E-value=1.2e+02 Score=25.74 Aligned_cols=58 Identities=14% Similarity=-0.018 Sum_probs=34.6
Q ss_pred CeEEEEeCCCCeEEEEEEcCCceEEEeCCCCCCCCCCCCeEEEecCccc------------C--------------CCEE
Q 019471 269 SKFETLDQGRELFFRIIRIGFEDIYLGSPGSFSEKYGKDYFICTGPAAM------------L--------------VPVV 322 (340)
Q Consensus 269 ~~~~l~d~~~~~~i~v~~~gf~~~vvWnP~~~~d~~~~~~fvCvEP~~~------------~--------------~~v~ 322 (340)
...+|+++-.+..+.+++.=-+.--+|+| .|||||=+-. . .--.
T Consensus 56 k~~eLL~~v~G~GL~v~Y~F~RqP~~~s~----------~mvsIql~ftN~s~~~i~~I~i~~k~l~~g~~i~~F~~I~~ 125 (145)
T PF14796_consen 56 KKYELLNRVNGKGLSVEYRFSRQPSLYSP----------SMVSIQLTFTNNSDEPIKNIHIGEKKLPAGMRIHEFPEIES 125 (145)
T ss_pred ceEEeeeccCCCceeEEEEEccCCcCCCC----------CcEEEEEEEEecCCCeecceEECCCCCCCCcEeeccCcccc
Confidence 45777887555555555421122223444 4999998820 0 0158
Q ss_pred eCCCCEEEEEEEEE
Q 019471 323 VQAGEKWKGAQVIE 336 (340)
Q Consensus 323 L~PGe~~~~~~~I~ 336 (340)
|+||++.++.+-|-
T Consensus 126 L~pg~s~t~~lgID 139 (145)
T PF14796_consen 126 LEPGASVTVSLGID 139 (145)
T ss_pred cCCCCeEEEEEEEe
Confidence 99999998877663
No 45
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=27.04 E-value=77 Score=21.81 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=15.6
Q ss_pred CCceEEEEEEEECCCcce
Q 019471 161 PLSMATAVIVKNNGRKAV 178 (340)
Q Consensus 161 ~~~L~~~l~v~N~g~~~~ 178 (340)
++.++.+++++|.|..++
T Consensus 11 Gd~v~Yti~v~N~g~~~a 28 (53)
T TIGR01451 11 GDTITYTITVTNNGNVPA 28 (53)
T ss_pred CCEEEEEEEEEECCCCce
Confidence 678999999999998765
No 46
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.34 E-value=1.4e+02 Score=30.16 Aligned_cols=32 Identities=16% Similarity=0.443 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCeEEEEEcccCC----ceEEEEEEEE
Q 019471 125 SQWTVKDVDSDTIDALQVELSCTSG----ALDITYVVSL 159 (340)
Q Consensus 125 ~~W~v~~~~~~~~~~v~~~L~~~p~----~f~l~~~~tL 159 (340)
..|+..+.++. .+-+++.+||- .+.+-++|++
T Consensus 365 LkWR~~~~des---~iPlTincWPSes~~g~dV~iEYe~ 400 (512)
T KOG2635|consen 365 LKWRMVDEDES---EIPLTINCWPSESGNGYDVNIEYEA 400 (512)
T ss_pred EEEeecccccc---cCceEEEeccccCCCCeEEEEEEee
Confidence 45998875433 67889999985 4777777776
No 47
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=25.79 E-value=1.3e+02 Score=23.98 Aligned_cols=28 Identities=11% Similarity=0.169 Sum_probs=22.1
Q ss_pred EEEeCCceEEEEEEEECCCcceeeeeec
Q 019471 157 VSLYPLSMATAVIVKNNGRKAVTLTSAI 184 (340)
Q Consensus 157 ~tL~~~~L~~~l~v~N~g~~~~~f~~g~ 184 (340)
+.+.++.=..+++|+|++++++.+..-.
T Consensus 9 ii~~~~~~~~~i~v~N~~~~~~~vq~~v 36 (122)
T PF00345_consen 9 IIFNESQRSASITVTNNSDQPYLVQVWV 36 (122)
T ss_dssp EEEETTSSEEEEEEEESSSSEEEEEEEE
T ss_pred EEEeCCCCEEEEEEEcCCCCcEEEEEEE
Confidence 4455666689999999999998887655
No 48
>PLN02303 urease
Probab=24.67 E-value=68 Score=34.98 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=23.5
Q ss_pred EEEeCCceEEEEEEEECCCcceeeeeeccc
Q 019471 157 VSLYPLSMATAVIVKNNGRKAVTLTSAILS 186 (340)
Q Consensus 157 ~tL~~~~L~~~l~v~N~g~~~~~f~~g~Hp 186 (340)
+.|....=+++++|+|+|++|+.++-=+|-
T Consensus 143 i~~n~gr~~~~l~v~n~gdrpiqvgSH~hf 172 (837)
T PLN02303 143 IIINAGRKAVKLKVTNTGDRPIQVGSHYHF 172 (837)
T ss_pred eeeCCCCCeEEEEEeeCCCCceEeccccch
Confidence 557777778999999999998776655553
No 49
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=24.10 E-value=33 Score=26.17 Aligned_cols=22 Identities=41% Similarity=0.925 Sum_probs=17.1
Q ss_pred CeEEEecCcccCCCEEeCCCCEEE
Q 019471 307 DYFICTGPAAMLVPVVVQAGEKWK 330 (340)
Q Consensus 307 ~~fvCvEP~~~~~~v~L~PGe~~~ 330 (340)
++|-|+++-. .-+.|.|||+|+
T Consensus 58 eyF~tLp~nT--~l~~L~~gq~W~ 79 (80)
T cd06536 58 DYFLCLPPNT--KFVLLAENEKWA 79 (80)
T ss_pred HHHhhCCCCc--EEEEECCCCccC
Confidence 3588888763 258999999995
No 50
>PF09095 DUF1926: Domain of unknown function (DUF1926); InterPro: IPR015179 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents a domain found in prokaryotic alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1.25 from EC). This domain adopts a beta-sandwich fold, in which two layers of anti-parallel beta-sheets are arranged in a nearly parallel fashion. The exact function of this domain is, as yet, unknown, however it has been proposed that it may play a role in transglycosylation reactions []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A.
Probab=23.88 E-value=2.5e+02 Score=26.37 Aligned_cols=61 Identities=7% Similarity=0.085 Sum_probs=36.8
Q ss_pred CCCeEEEEEcCCCCCeEEEEEc--ccCCceEEEEEEEEeCCceEEEEEEEECCCcceeeeeeccceEe
Q 019471 124 SSQWTVKDVDSDTIDALQVELS--CTSGALDITYVVSLYPLSMATAVIVKNNGRKAVTLTSAILSHLL 189 (340)
Q Consensus 124 ~~~W~v~~~~~~~~~~v~~~L~--~~p~~f~l~~~~tL~~~~L~~~l~v~N~g~~~~~f~~g~Hpyf~ 189 (340)
+.+|++..... .++++-. ..++++.|+=+|+|.+++|.++++++ .++.++.+-+|.=-.|+
T Consensus 123 ~~~y~~~~~~~----~v~f~r~G~~~~~~~~l~K~y~l~~~~l~V~Y~l~-~~~~~~~~~f~vEiNla 185 (278)
T PF09095_consen 123 NQPYELEVNRD----EVTFERDGGVEGHPITLEKRYRLTKNGLQVDYRLT-ESPEPISLLFGVEINLA 185 (278)
T ss_dssp SS--EEEEESS----EEEEEEEEEESEEEEEEEEEEEEETTEEEEEEEEE--ESS---EEEEEEEEE-
T ss_pred CCceEEEecCC----ceEEEEecccccCceEEEEEEEEcCCEEEEEEEEE-ECCCCcceEEEEEEeec
Confidence 46677765432 2444432 36788888899999999999999999 66665555544333333
No 51
>PF06165 Glyco_transf_36: Glycosyltransferase family 36; InterPro: IPR010383 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyltransferase family 36 includes cellobiose phosphorylase (2.4.1.20 from EC), cellodextrin phosphorylase (2.4.1.49 from EC), and chitobiose phosphorylase. Many members of this family contain two copies of the domain represented in this entry.; PDB: 3QDE_A 3RRS_B 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A ....
Probab=23.40 E-value=2.2e+02 Score=22.64 Aligned_cols=35 Identities=14% Similarity=0.037 Sum_probs=19.6
Q ss_pred EEEEEEEeCCceEEEEEEEECCCcceeeeeeccceEe
Q 019471 153 ITYVVSLYPLSMATAVIVKNNGRKAVTLTSAILSHLL 189 (340)
Q Consensus 153 l~~~~tL~~~~L~~~l~v~N~g~~~~~f~~g~Hpyf~ 189 (340)
+++.|..+++.=-..++++|+++++.-+++- +|+.
T Consensus 54 ~~v~V~~~~~vEi~~l~l~N~~~~~r~L~vt--sy~E 88 (110)
T PF06165_consen 54 LTVFVPPDDPVEIRRLRLTNTSNRPRRLSVT--SYAE 88 (110)
T ss_dssp EEEE--TTSSEEEEEEEEEE-SSS-EEEEEE--EEEE
T ss_pred EEEEEcCCCCEEEEEEEEEECcCCcEEEEEE--EEEE
Confidence 3333444455556779999999988765543 4544
No 52
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=23.11 E-value=97 Score=22.54 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=15.5
Q ss_pred CCceEEEEEEEECCCcce
Q 019471 161 PLSMATAVIVKNNGRKAV 178 (340)
Q Consensus 161 ~~~L~~~l~v~N~g~~~~ 178 (340)
++.++.+++|+|.|..++
T Consensus 40 Gd~v~ytitvtN~G~~~a 57 (76)
T PF01345_consen 40 GDTVTYTITVTNTGPAPA 57 (76)
T ss_pred CCEEEEEEEEEECCCCee
Confidence 678999999999998764
No 53
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=23.06 E-value=55 Score=23.78 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=12.9
Q ss_pred EEeCCCCEEEEEEEEEe
Q 019471 321 VVVQAGEKWKGAQVIEH 337 (340)
Q Consensus 321 v~L~PGe~~~~~~~I~~ 337 (340)
+.|+|||+.+.+++|..
T Consensus 27 v~l~pGes~~v~~~l~~ 43 (71)
T PF14310_consen 27 VSLAPGESKTVSFTLPP 43 (71)
T ss_dssp EEE-TT-EEEEEEEEEH
T ss_pred EEECCCCEEEEEEEECH
Confidence 88999999998888864
No 54
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=21.24 E-value=42 Score=25.47 Aligned_cols=22 Identities=27% Similarity=0.688 Sum_probs=17.0
Q ss_pred CeEEEecCcccCCCEEeCCCCEEE
Q 019471 307 DYFICTGPAAMLVPVVVQAGEKWK 330 (340)
Q Consensus 307 ~~fvCvEP~~~~~~v~L~PGe~~~ 330 (340)
++|-|+++-. .-+.|.|||+|.
T Consensus 56 eyF~~LpdnT--~lm~L~~gq~W~ 77 (78)
T cd06539 56 EFFQTLGDNT--HFMVLEKGQKWT 77 (78)
T ss_pred HHHhhCCCCC--EEEEECCCCccC
Confidence 3588888763 258999999995
Done!