BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019472
(340 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W425|PSMD6_ORYSJ 26S proteasome non-ATPase regulatory subunit 6 OS=Oryza sativa
subsp. japonica GN=RPN7 PE=2 SV=1
Length = 389
Score = 577 bits (1486), Expect = e-164, Method: Compositional matrix adjust.
Identities = 276/303 (91%), Positives = 295/303 (97%)
Query: 38 RIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQ 97
+IADAEENLGESEVREAHLAKSL++I++G+KEKALEQLKVTE KTVAVGQKMDLVF+TLQ
Sbjct: 87 KIADAEENLGESEVREAHLAKSLYFIRVGEKEKALEQLKVTEGKTVAVGQKMDLVFHTLQ 146
Query: 98 LGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 157
+GFFYMDFDLISKSIDKAK LFEEGGDWERKNRLKVYEGLYCM+TRNFKKAASLFLDSIS
Sbjct: 147 IGFFYMDFDLISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMATRNFKKAASLFLDSIS 206
Query: 158 TFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDC 217
TFTTYELFPYDTFIFYTVLTS+ISLDRVSLK KVVDAPEIL VIGK+P+LSEFLNSLY+C
Sbjct: 207 TFTTYELFPYDTFIFYTVLTSVISLDRVSLKAKVVDAPEILAVIGKVPHLSEFLNSLYNC 266
Query: 218 QYKSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVT 277
QYKSFF+AF+GLTEQIKLDRYL PHFRYYMREVRTVVYSQFLESYKSVT+EAMA AFGVT
Sbjct: 267 QYKSFFAAFSGLTEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGVT 326
Query: 278 VEFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRV 337
V+FID+ELSRFIAAGKLHCKIDKVA VLETNRPDA+NA YQATIKQGDFLLNRIQKLSRV
Sbjct: 327 VDFIDLELSRFIAAGKLHCKIDKVACVLETNRPDARNAFYQATIKQGDFLLNRIQKLSRV 386
Query: 338 IDL 340
IDL
Sbjct: 387 IDL 389
>sp|Q93Y35|PSMD6_ARATH Probable 26S proteasome non-ATPase regulatory subunit 6
OS=Arabidopsis thaliana GN=At4g24820 PE=2 SV=1
Length = 387
Score = 575 bits (1481), Expect = e-163, Method: Compositional matrix adjust.
Identities = 275/303 (90%), Positives = 295/303 (97%)
Query: 38 RIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQ 97
+IADAEENLGESEVREAHLAK+L++I+I DKEKALEQLK+TE KTVAVGQKMD+VFYTLQ
Sbjct: 85 KIADAEENLGESEVREAHLAKALYFIRISDKEKALEQLKLTEGKTVAVGQKMDVVFYTLQ 144
Query: 98 LGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 157
L FFYMDFDL+SKSIDKAK LFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS
Sbjct: 145 LAFFYMDFDLVSKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 204
Query: 158 TFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDC 217
TFTTYE+FPY+TFIFYTVLTSII+LDRVSLKQKVVDAPEILTV+GKIP+LSEFLNSLY+C
Sbjct: 205 TFTTYEIFPYETFIFYTVLTSIITLDRVSLKQKVVDAPEILTVLGKIPFLSEFLNSLYEC 264
Query: 218 QYKSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVT 277
QYK+FFSAFAG+ QIK DRYLYPHFR+YMREVRTVVYSQFLESYKSVT+EAMAKAFGV+
Sbjct: 265 QYKAFFSAFAGMAVQIKYDRYLYPHFRFYMREVRTVVYSQFLESYKSVTVEAMAKAFGVS 324
Query: 278 VEFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRV 337
V+FID ELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRV
Sbjct: 325 VDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRV 384
Query: 338 IDL 340
IDL
Sbjct: 385 IDL 387
>sp|Q15008|PSMD6_HUMAN 26S proteasome non-ATPase regulatory subunit 6 OS=Homo sapiens
GN=PSMD6 PE=1 SV=1
Length = 389
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 181/338 (53%), Positives = 251/338 (74%), Gaps = 12/338 (3%)
Query: 15 PSFGHLCLLLSYLVVISFVMPLSR------------IADAEENLGESEVREAHLAKSLFY 62
P + LC L + + + + + + + DAE+NLGESE+R+A +AK+ +
Sbjct: 52 PYYEALCKSLDWQIDVDLLNKMKKANEDELKRLDEELEDAEKNLGESEIRDAMMAKAEYL 111
Query: 63 IQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG 122
+IGDKE AL + T KTVA+G ++D+VFY L++G FYMD DLI+++ +KAKSL EEG
Sbjct: 112 CRIGDKEGALTAFRKTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEG 171
Query: 123 GDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISL 182
GDW+R+NRLKVY+GLYC++ R+FK+AA LFLD++STFT+YEL Y TF+ YTV S+I+L
Sbjct: 172 GDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDYKTFVTYTVYVSMIAL 231
Query: 183 DRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLYPH 242
+R L++KV+ EIL V+ +P + ++L SLY+C+Y FF + A + +++K D PH
Sbjct: 232 ERPDLREKVIKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLAVVEQEMKKDWLFAPH 291
Query: 243 FRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVA 302
+RYY+RE+R YSQ LESY+S+T+ MA+AFGV VEFID ELSRFIAAG+LHCKIDKV
Sbjct: 292 YRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVEFIDQELSRFIAAGRLHCKIDKVN 351
Query: 303 GVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 340
++ETNRPD+KN YQ TIK+GD LLNR+QKLSRVI++
Sbjct: 352 EIVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINM 389
>sp|Q99JI4|PSMD6_MOUSE 26S proteasome non-ATPase regulatory subunit 6 OS=Mus musculus
GN=Psmd6 PE=1 SV=1
Length = 389
Score = 382 bits (982), Expect = e-105, Method: Compositional matrix adjust.
Identities = 177/302 (58%), Positives = 240/302 (79%)
Query: 39 IADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQL 98
+ DAE+NLGESE+R+A +AK+ + QIGDKE AL + T KTVA+G ++D+VFY L++
Sbjct: 88 LEDAEKNLGESEIRDAMMAKAEYLCQIGDKEGALTAFRKTYDKTVALGHRLDIVFYLLRI 147
Query: 99 GFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 158
G FYMD DLI+++ +KAKSL EEGGDW+R+NRLKVY+GLYC++ R+FK+AA LFLD++ST
Sbjct: 148 GLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVST 207
Query: 159 FTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQ 218
FT+YEL Y TF+ YTV S+I+L+R L++KV+ EIL V+ +P + ++L SLY+C+
Sbjct: 208 FTSYELMDYKTFVTYTVYVSMIALERPDLREKVIKGAEILEVLHSLPAVRQYLFSLYECR 267
Query: 219 YKSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTV 278
Y FF + A + +++K D PH+RYY+RE+R YSQ LESY+S+T+ MA+AFGV V
Sbjct: 268 YSVFFQSLAIVEQEMKKDWLFAPHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGV 327
Query: 279 EFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVI 338
+FID ELSRFIAAG+LHCKIDKV ++ETNRPD+KN YQ TIK+GD LLNR+QKLSRVI
Sbjct: 328 DFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVI 387
Query: 339 DL 340
++
Sbjct: 388 NM 389
>sp|Q3T0B2|PSMD6_BOVIN 26S proteasome non-ATPase regulatory subunit 6 OS=Bos taurus
GN=PSMD6 PE=2 SV=1
Length = 389
Score = 379 bits (974), Expect = e-104, Method: Compositional matrix adjust.
Identities = 177/302 (58%), Positives = 239/302 (79%)
Query: 39 IADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQL 98
+ DAE+NLGESE+R+A +AK+ + +IGDKE AL + T KTVA+G ++D+VFY L++
Sbjct: 88 LEDAEKNLGESEIRDAMMAKAEYLCRIGDKEGALTAFRRTYDKTVALGHRLDIVFYLLRI 147
Query: 99 GFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 158
G FYMD DLI+++ +KAKSL EEGGDW+R+NRLKVY+GLYC++ R+FK+AA LFLD++ST
Sbjct: 148 GLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVST 207
Query: 159 FTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQ 218
FT+YEL Y TF+ YTV S+I+L+R L++KV+ EIL V+ +P + ++L SLY+C+
Sbjct: 208 FTSYELMDYKTFVTYTVYVSMIALERPDLREKVIKGAEILEVLHSLPAVRQYLFSLYECR 267
Query: 219 YKSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTV 278
Y FF + A + +++K D PH+RYY+RE+R YSQ LESY+S+T+ MA+AFGV V
Sbjct: 268 YSVFFQSLAIVEQEMKKDWLFAPHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGV 327
Query: 279 EFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVI 338
EFID ELSRFIAAG+LHCKIDKV V+ETNRPD+KN YQ TIK+G LLNR+QKLSRVI
Sbjct: 328 EFIDQELSRFIAAGRLHCKIDKVNEVVETNRPDSKNWQYQETIKKGGLLLNRVQKLSRVI 387
Query: 339 DL 340
++
Sbjct: 388 NM 389
>sp|Q9V3G7|PSMD6_DROME 26S proteasome non-ATPase regulatory subunit 6 OS=Drosophila
melanogaster GN=Rpn7 PE=2 SV=1
Length = 389
Score = 377 bits (969), Expect = e-104, Method: Compositional matrix adjust.
Identities = 177/338 (52%), Positives = 251/338 (74%), Gaps = 12/338 (3%)
Query: 15 PSFGHLCLLLSYLVVISFVMPL------------SRIADAEENLGESEVREAHLAKSLFY 62
P + H+C L + V + + + I DAE+NLGE EVREA+L KS +
Sbjct: 52 PWYEHICSELGWTVDKDLLARMKENNRVEVEQLDAAIEDAEKNLGEMEVREANLKKSEYL 111
Query: 63 IQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG 122
+IGDK A + T KTV++G ++D+VF+ ++LG FY+D DLI+++IDKAK L EEG
Sbjct: 112 CRIGDKAAAETAFRKTYEKTVSLGHRLDIVFHLIRLGLFYLDHDLITRNIDKAKYLIEEG 171
Query: 123 GDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISL 182
GDW+R+NRLKVY+G+Y ++ R+FK AA+ FLD++STFT+YEL Y TF+ YTV ++I+L
Sbjct: 172 GDWDRRNRLKVYQGVYSVAVRDFKAAATFFLDTVSTFTSYELMDYPTFVRYTVYVAMIAL 231
Query: 183 DRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLYPH 242
R L+ KV+ EI V+ +P + +FL SLY+CQY++F+ AG+ +Q++LD ++PH
Sbjct: 232 PRNELRDKVIKGSEIQEVLHGLPDVKQFLFSLYNCQYENFYVHLAGVEKQLRLDYLIHPH 291
Query: 243 FRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVA 302
+RYY+RE+R + Y+Q LESY+S+T++ MA++FGVTVE+ID EL+RFIAAG+LH K+D+V
Sbjct: 292 YRYYVREMRILGYTQLLESYRSLTLQYMAESFGVTVEYIDQELARFIAAGRLHAKVDRVG 351
Query: 303 GVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 340
G++ETNRPD KN YQATIKQGD LLNRIQKLSRVI++
Sbjct: 352 GIVETNRPDNKNWQYQATIKQGDLLLNRIQKLSRVINI 389
>sp|Q55C75|PSMD6_DICDI 26S proteasome non-ATPase regulatory subunit 6 OS=Dictyostelium
discoideum GN=psmD6 PE=1 SV=1
Length = 382
Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 168/304 (55%), Positives = 237/304 (77%)
Query: 37 SRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTL 96
++I D+ EN GESE+REA+LAKS FY +IGDK+ A+E + T KTV +GQK+D+VF +
Sbjct: 79 NKITDSVENFGESEIREAYLAKSDFYCRIGDKDTAVEMYRQTFEKTVPLGQKLDIVFTLI 138
Query: 97 QLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSI 156
++G F+MD D+++++++KA+SL EEGGDW+RKNRLK YE +Y MS R FK+A+ L+L+++
Sbjct: 139 RMGIFWMDHDIVTRNLEKAQSLVEEGGDWDRKNRLKTYEAVYKMSIRQFKEASDLYLETV 198
Query: 157 STFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYD 216
++FT+ E Y FI Y + TS++ LDRVSLKQKV+D+P++L+VI P L + L S Y+
Sbjct: 199 ASFTSTEFIDYSRFIQYLIFTSLLHLDRVSLKQKVIDSPDVLSVINDTPKLQDLLQSFYN 258
Query: 217 CQYKSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGV 276
Y +FF A A ++ IK DRYL H R++ RE+R + Y+QFLESY SV +E+M+ FGV
Sbjct: 259 GDYANFFGALAHFSDSIKGDRYLAEHSRFFTREMRILAYNQFLESYSSVKLESMSNQFGV 318
Query: 277 TVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSR 336
+ +FID ELSRF+AAG+L+CKIDKV+GV+ET R DAKN LY+ T++QGD LLNR+QKLSR
Sbjct: 319 SYDFIDRELSRFVAAGRLNCKIDKVSGVIETTRSDAKNHLYKTTLQQGDNLLNRVQKLSR 378
Query: 337 VIDL 340
VI++
Sbjct: 379 VINV 382
>sp|Q20585|PSMD6_CAEEL 26S proteasome non-ATPase regulatory subunit 6 OS=Caenorhabditis
elegans GN=rpn-7 PE=3 SV=1
Length = 410
Score = 317 bits (813), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 160/310 (51%), Positives = 208/310 (67%), Gaps = 7/310 (2%)
Query: 37 SRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTL 96
+ + DAE+NLGESEVR+ L K +Y QIGDK+ AL+ T KTV +G ++D+VF +
Sbjct: 100 AEVEDAEKNLGESEVRQGLLRKFEYYCQIGDKDNALKAYTATYEKTVGMGYRIDVVFAMI 159
Query: 97 QLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSI 156
++G F++D LI+K I KAK L E+GGDWERKNRL+ YE LY MS R+F AA LFL+++
Sbjct: 160 RVGLFFLDHHLINKFITKAKELMEQGGDWERKNRLRSYEALYRMSVRDFAGAADLFLEAV 219
Query: 157 STFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVI------GKIPYLSEF 210
TF +YEL Y+ I YTV+T+ +LDR L+ KV+ E+ + G + + E+
Sbjct: 220 PTFGSYELMTYENLILYTVITTTFALDRPDLRTKVIRCNEVQEQLTGGGLNGTLIPVREY 279
Query: 211 LNSLYDCQYKSFFSAFAGL-TEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEA 269
L S YDC Y FF A L +E+ K DRYL PHF YY R +R Y QFL YK+V I+
Sbjct: 280 LESYYDCHYDRFFIQLAALESERFKFDRYLSPHFNYYSRGMRHRAYEQFLTPYKTVRIDM 339
Query: 270 MAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLN 329
MAK FGV+ FID EL R IA G+L C+ID V GV+E N D+KN LY+A IK GD LLN
Sbjct: 340 MAKDFGVSRAFIDRELHRLIATGQLQCRIDAVNGVIEVNHRDSKNHLYKAVIKDGDILLN 399
Query: 330 RIQKLSRVID 339
RIQKL+RVI+
Sbjct: 400 RIQKLARVIN 409
>sp|Q10335|RPN7_SCHPO Probable 26S proteasome regulatory subunit rpn7
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpn7 PE=2 SV=1
Length = 409
Score = 285 bits (728), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 137/299 (45%), Positives = 200/299 (66%), Gaps = 4/299 (1%)
Query: 39 IADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQL 98
I DA+E GE E+ EA K+ +Y I D+E+ ++ T + G K+D++F ++L
Sbjct: 99 IEDAQELNGEHEILEAMKNKADYYTNICDRERGVQLCDETFERATLTGMKIDVLFSKIRL 158
Query: 99 GFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 158
+ Y D ++ + ++K K L E+GGDWERKNRLK Y+G+Y MS RNF AA L LD +ST
Sbjct: 159 AYVYADMRVVGQLLEKLKPLIEKGGDWERKNRLKAYQGIYLMSIRNFSGAADLLLDCMST 218
Query: 159 FTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEF---LNSLY 215
F++ EL PY + Y V++ ISLDRV +K K+VD+PE+L V+ + +S +NSLY
Sbjct: 219 FSSTELLPYYDVVRYAVISGAISLDRVDVKTKIVDSPEVLAVLPQNESMSSLEACINSLY 278
Query: 216 DCQYKSFFSAFAGL-TEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAF 274
C Y FF A + +K D++L H+RYY+RE+R Y+Q LESY++++I++MA +F
Sbjct: 279 LCDYSGFFRTLADVEVNHLKCDQFLVAHYRYYVREMRRRAYAQLLESYRALSIDSMAASF 338
Query: 275 GVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQK 333
GV+V++ID +L+ FI KL+C ID+V GV+ TNRPD KN YQ +KQGD LLN++QK
Sbjct: 339 GVSVDYIDRDLASFIPDNKLNCVIDRVNGVVFTNRPDEKNRQYQEVVKQGDVLLNKLQK 397
>sp|Q06103|RPN7_YEAST 26S proteasome regulatory subunit RPN7 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN7 PE=1 SV=3
Length = 429
Score = 245 bits (626), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 120/284 (42%), Positives = 185/284 (65%), Gaps = 4/284 (1%)
Query: 61 FYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFE 120
+Y QIGDK+ A + L + SK ++ G K+D++ +LGFFY D + + ++ S+ E
Sbjct: 140 YYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIE 199
Query: 121 EGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSII 180
+GGDWER+NR K Y G++C++ RNFK+AA L +DS++TFT+ EL Y++ Y +T +
Sbjct: 200 KGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSYESIATYASVTGLF 259
Query: 181 SLDRVSLKQKVVDAPEILTVIGKIPYL---SEFLNSLYDCQYKSFFSAFAGLTEQIKLD- 236
+L+R LK KV+D+PE+L++I L S SLY Y S+F + +
Sbjct: 260 TLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPC 319
Query: 237 RYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC 296
+YL H +++RE+R VY+Q LESYK++++++MA AFGV+V F+D +L +FI +L+C
Sbjct: 320 KYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNC 379
Query: 297 KIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 340
ID+V G++ETNRPD KNA Y +KQGD LL ++QK + L
Sbjct: 380 VIDRVNGIVETNRPDNKNAQYHLLVKQGDGLLTKLQKYGAAVRL 423
>sp|Q54QX3|CSN1_DICDI COP9 signalosome complex subunit 1 OS=Dictyostelium discoideum
GN=csn1 PE=1 SV=1
Length = 458
Score = 101 bits (251), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 140/311 (45%), Gaps = 21/311 (6%)
Query: 42 AEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF 101
A+ N+ + +R A FY +IGD + AL+ T + + F ++LG
Sbjct: 118 AKSNMVKDSIRFAQNDLGEFYYKIGDHQNALKCFIRTRDYCTTSKHVLAMCFNIIKLGVD 177
Query: 102 YMDFDLISKSIDKAKSLFEEGGDWER--KNRLKVYEGLYCMSTRNFKKAASLFLDSISTF 159
++ I KA E+ D + +L+ GLY + +K AA F+++ F
Sbjct: 178 TQNYTHAPSYIAKA----EQSPDLDNVSNAKLRSVNGLYNLDGSRYKLAARKFIET--PF 231
Query: 160 TTYELF-----PYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSL 214
+F P D +Y L ++ + DR LK+KV+D P + +P L E +N
Sbjct: 232 EQSNVFSDIISPQD-IAYYGGLCALATFDRNELKKKVIDDPMFKNYLELVPELRELINDF 290
Query: 215 YDCQYKSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAF 274
Y+ +Y S + + LD +LY H + +R+ Q+ Y+SV + MA AF
Sbjct: 291 YNTKYGSCLKYLDKMKPILLLDIHLYKHVEILYQRIRSKALVQYFSPYQSVDMNIMASAF 350
Query: 275 GVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQG-DF------L 327
TV ++ E+S+ I ++ +ID L + D + ++ T++ G DF L
Sbjct: 351 NTTVTLLEKEISKLIMENEIQARIDSHNKRLYARKADQRTTTFEKTVQVGSDFQNSSNSL 410
Query: 328 LNRIQKLSRVI 338
L R++ L+ I
Sbjct: 411 LLRLEMLNNNI 421
>sp|Q6NRT5|CSN1_XENLA COP9 signalosome complex subunit 1 OS=Xenopus laevis GN=csn1 PE=2
SV=1
Length = 487
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 126/285 (44%), Gaps = 13/285 (4%)
Query: 51 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISK 110
+R H Y+ GD AL+ + +++ +++ + ++ +
Sbjct: 157 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQNWSHVLS 216
Query: 111 SIDKAKS---LFEEGGDWERKN-----RLKVYEGLYCMSTRNFKKAASLFLDSISTFTTY 162
+ KA+S + E+ G+ + + +LK GL ++ R +K+AA FL +++F
Sbjct: 217 YVSKAESTPEIAEQRGERDSQTQAVLTKLKCAAGLAELAARKYKQAAKCFL--LASFDHC 274
Query: 163 ---ELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQY 219
EL Y L ++ + DR L++ V+ + + P + + + Y+ +Y
Sbjct: 275 DFPELLSPSNVAVYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKY 334
Query: 220 KSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVE 279
S + + + LD YL PH R ++R Q+ Y S + MA AF TV
Sbjct: 335 ASCLKMLDEIKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMYKMATAFNTTVS 394
Query: 280 FIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQG 324
++ EL++ I G ++ +ID + +L D ++ ++ +++ G
Sbjct: 395 ALEDELTQLILEGLINARIDSHSKILYARDVDQRSTTFEKSLQMG 439
>sp|Q99LD4|CSN1_MOUSE COP9 signalosome complex subunit 1 OS=Mus musculus GN=Gps1 PE=1
SV=1
Length = 471
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 128/295 (43%), Gaps = 13/295 (4%)
Query: 51 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISK 110
+R H Y+ GD AL+ + +++ +++ + ++ +
Sbjct: 141 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQNWSHVLS 200
Query: 111 SIDKAKS---LFEEGGDWERKN-----RLKVYEGLYCMSTRNFKKAASLFLDSISTFTTY 162
+ KA+S + E+ G+ + + +LK GL ++ R +K+AA FL +++F
Sbjct: 201 YVSKAESTPEIAEQRGERDSQTQAILTKLKCAAGLAELAARKYKQAAKCFL--LASFDHC 258
Query: 163 ---ELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQY 219
EL Y L ++ + DR L++ V+ + + P + + + Y+ +Y
Sbjct: 259 DFPELLSPSNVAVYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKY 318
Query: 220 KSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVE 279
S + + + LD YL PH R ++R Q+ Y S + MA AF TV
Sbjct: 319 ASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHKMAAAFNTTVA 378
Query: 280 FIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKL 334
++ EL++ I G ++ +ID + +L D ++ ++ ++ G R + +
Sbjct: 379 ALEDELTQLILEGLINARIDSHSKILYARDVDQRSTTFEKSLLMGKEFQRRAKAM 433
>sp|P97834|CSN1_RAT COP9 signalosome complex subunit 1 OS=Rattus norvegicus GN=Gps1
PE=1 SV=1
Length = 471
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 128/295 (43%), Gaps = 13/295 (4%)
Query: 51 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISK 110
+R H Y+ GD AL+ + +++ +++ + ++ +
Sbjct: 141 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQNWSHVLS 200
Query: 111 SIDKAKS---LFEEGGDWERKN-----RLKVYEGLYCMSTRNFKKAASLFLDSISTFTTY 162
+ KA+S + E+ G+ + + +LK GL ++ R +K+AA FL +++F
Sbjct: 201 YVSKAESTPEIAEQRGERDSQTQAILTKLKCAAGLAELAARKYKQAAKCFL--LASFDHC 258
Query: 163 ---ELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQY 219
EL Y L ++ + DR L++ V+ + + P + + + Y+ +Y
Sbjct: 259 DFPELLSPSNVAVYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKY 318
Query: 220 KSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVE 279
S + + + LD YL PH R ++R Q+ Y S + MA AF TV
Sbjct: 319 ASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHKMAAAFNTTVA 378
Query: 280 FIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKL 334
++ EL++ I G ++ +ID + +L D ++ ++ ++ G R + +
Sbjct: 379 ALEDELTQVILEGLINARIDSHSKILYARDVDQRSTTFEKSLLMGKEFQRRAKAM 433
>sp|P45432|CSN1_ARATH COP9 signalosome complex subunit 1 OS=Arabidopsis thaliana GN=CSN1
PE=1 SV=2
Length = 441
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 2/198 (1%)
Query: 130 RLKVYEGLYCMSTRNFKKAASLFLD-SISTFTTY-ELFPYDTFIFYTVLTSIISLDRVSL 187
+L+ GL + + +K AA FLD + +Y E+ Y L ++ S DR L
Sbjct: 216 KLRCASGLAHLELKKYKLAARKFLDVNPELGNSYNEVIAPQDIATYGGLCALASFDRSEL 275
Query: 188 KQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLYPHFRYYM 247
KQKV+D + +P + E +N Y +Y S A L + LD +L+ H
Sbjct: 276 KQKVIDNINFRNFLELVPDVRELINDFYSSRYASCLEYLASLKSNLLLDIHLHDHVDTLY 335
Query: 248 REVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLET 307
++R Q+ + SV + MA AF +V ++ EL I ++ +ID +L
Sbjct: 336 DQIRKKALIQYTLPFVSVDLSRMADAFKTSVSGLEKELEALITDNQIQARIDSHNKILYA 395
Query: 308 NRPDAKNALYQATIKQGD 325
D +NA +Q ++ G+
Sbjct: 396 RHADQRNATFQKVLQMGN 413
>sp|Q13098|CSN1_HUMAN COP9 signalosome complex subunit 1 OS=Homo sapiens GN=GPS1 PE=1
SV=4
Length = 491
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/293 (20%), Positives = 124/293 (42%), Gaps = 9/293 (3%)
Query: 51 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISK 110
+R H Y+ GD AL+ + +++ +++ + ++ +
Sbjct: 161 IRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQNWSHVLS 220
Query: 111 SIDKAKS---LFEEGGDWERKN-----RLKVYEGLYCMSTRNFKKAA-SLFLDSISTFTT 161
+ KA+S + E+ G+ + + +LK GL ++ R +K+AA L L S
Sbjct: 221 YVSKAESTPEIAEQRGERDSQTQAILTKLKCAAGLAELAARKYKQAAKCLLLASFDHCDF 280
Query: 162 YELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKS 221
EL Y L ++ + DR L++ V+ + + P + + + Y+ +Y S
Sbjct: 281 PELLSPSNVAIYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYAS 340
Query: 222 FFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFI 281
+ + + LD YL PH R ++R Q+ Y S + MA AF TV +
Sbjct: 341 CLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHRMAAAFNTTVAAL 400
Query: 282 DVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKL 334
+ EL++ I G + ++D + +L D ++ ++ ++ G R + +
Sbjct: 401 EDELTQLILEGLISARVDSHSKILYARDVDQRSTTFEKSLLMGKEFQRRAKAM 453
>sp|Q9VVU5|CSN1_DROME COP9 signalosome complex subunit 1b OS=Drosophila melanogaster
GN=CSN1b PE=2 SV=1
Length = 525
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/294 (20%), Positives = 125/294 (42%), Gaps = 6/294 (2%)
Query: 37 SRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTL 96
S + + + N + +R H + Y+ GD AL+ + +++ +
Sbjct: 179 SDLKNYKSNSIKESIRRGHDDLADHYLSCGDLTNALKCYSRARDYCTSGKHVVNMCLNVI 238
Query: 97 QLGFFYMDFDLISKSIDKAKSL--FEEG---GDWERKNRLKVYEGLYCMSTRNFKKAASL 151
++ + ++ + I KA+S F EG + + RL+ GL + + +K AA
Sbjct: 239 KVSIYLQNWAHVMSYISKAESTPDFAEGSKEANAQVHTRLECAAGLAELQQKKYKVAAKH 298
Query: 152 FLDSISTFTTY-ELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEF 210
FL++ + E+ Y L ++ + DR LK+ V+ + + P L +
Sbjct: 299 FLNANFDHCDFPEMISTSNVAVYGGLCALATFDRQELKRLVIASTSFKLFLELEPQLRDI 358
Query: 211 LNSLYDCQYKSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAM 270
+ Y+ +Y S + + + + +D Y+ PH ++R Q+ Y S + M
Sbjct: 359 IFKFYESKYASCLTLLDEIRDNLLVDMYIAPHVTTLYTKIRNRALIQYFSPYMSADMHKM 418
Query: 271 AKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQG 324
A AF +V ++ E+ + I G++ +ID +L D +N+ ++ + G
Sbjct: 419 AMAFNSSVGDLENEVMQLILDGQIQARIDSHNKILFAKEADQRNSTFERALIMG 472
>sp|Q7RXQ1|CSN1_NEUCR COP9 signalosome complex subunit 1 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-1 PE=1 SV=1
Length = 425
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 113/265 (42%), Gaps = 8/265 (3%)
Query: 43 EENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFY 102
+ NL + +R + + IGD E A++ ++ + Q +DL +++
Sbjct: 106 KNNLIKESIRMGNEDLGKHFEAIGDVEAAMDSFWKMRTEVSSTEQLVDLGKLLVRVAIER 165
Query: 103 MDFDLISKSIDKAKSLFEEGGDWER-KNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTT 161
D+ I + S+ + + K K+ G+ + +K+AA F+++ S+
Sbjct: 166 RDWKSIGNHLKPLNSVNDSDPKAKALKTYSKIANGIAALGQERYKEAAFCFVEA-SSGVP 224
Query: 162 YELF-----PYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYD 216
E++ P D I Y L ++ ++DR L+ ++D + + P++ + +
Sbjct: 225 PEIYNQIASPNDVAI-YGGLLALATMDRHELQANLLDNDSFREFLQREPHIRRAITQFVN 283
Query: 217 CQYKSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGV 276
+Y + LD YL H ++RT Q+L+ + V ++ M KAF
Sbjct: 284 GRYAACIEILESYRPDYLLDIYLQKHVPKLYADIRTKSIVQYLKPFSCVRLDTMQKAFNG 343
Query: 277 TVEFIDVELSRFIAAGKLHCKIDKV 301
I+ EL I GKL+ +ID +
Sbjct: 344 PGPSIEDELFTMIKDGKLNARIDAI 368
>sp|Q5BD89|CSN1_EMENI COP9 signalosome complex subunit 1 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnA PE=1 SV=2
Length = 498
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/301 (18%), Positives = 120/301 (39%), Gaps = 22/301 (7%)
Query: 43 EENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFY 102
+ NL + +R + Y +IGD A + ++F + +
Sbjct: 147 KNNLIKESIRMGNEELGQHYHRIGDLTSAFKAYSRMRDFCTTPSHIASMLFKIINVAIER 206
Query: 103 MDFDLISKSIDKAKSLFEEGGDWE----RKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 158
D+ + ++ + +S +GG E + ++ GL + + ++ +AA+ F+ + +
Sbjct: 207 GDWLNVQSNVHRLRS---QGGKPEEQAKHQPKISAAMGLSQLHSGSYLEAANSFIATDPS 263
Query: 159 F--TTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYD 216
T E+ + Y L ++ S+DR L+++V+D + P++ ++ +
Sbjct: 264 LGDTFNEVLTSNDVAVYGGLCALASMDRNELQRRVLDNSSFRNFLELEPHIRRAISFFCN 323
Query: 217 CQYKSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAF-- 274
+++ LD +L H + +RT Q+L + V++E+MAK F
Sbjct: 324 SKFRPCLEILEAYRADYLLDIHLQRHVQVLYNRIRTKSIQQYLIPFNRVSLESMAKIFVL 383
Query: 275 ----------GVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQG 324
F+ EL I G L +ID VL + + D + + +A +
Sbjct: 384 GNPTSQSSQSDSKSAFVQ-ELISLIQDGTLDARIDLEKHVLVSTQGDKRIEVQEAVLDSL 442
Query: 325 D 325
D
Sbjct: 443 D 443
>sp|Q9GS00|CSN1_CAEEL COP9 signalosome complex subunit 1 OS=Caenorhabditis elegans
GN=csn-1 PE=1 SV=1
Length = 601
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 61/134 (45%)
Query: 172 FYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFAGLTE 231
Y +L+++ ++ R LK +V ++ P L E L S ++ F +
Sbjct: 360 IYGMLSAMATMSRADLKLQVSGNGTFRKLLESEPQLIELLGSYTSSRFGRCFEIMRSVKP 419
Query: 232 QIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAA 291
++ LD ++ + ++R Q+L+ Y ++ + MA+A G++ + + L I
Sbjct: 420 RLLLDPFISRNVDELFEKIRQKCVLQYLQPYSTIKMATMAEAVGMSSAELQLSLLELIEQ 479
Query: 292 GKLHCKIDKVAGVL 305
+ KID+ G++
Sbjct: 480 KHVSLKIDQNEGIV 493
>sp|O94308|CSN1_SCHPO COP9 signalosome complex subunit 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn1 PE=1 SV=1
Length = 422
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/257 (20%), Positives = 95/257 (36%), Gaps = 3/257 (1%)
Query: 45 NLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMD 104
NL +R A L + F+ +G + AL GQ L +++ + +
Sbjct: 105 NLIRESIRAAQLDLASFFADVGQFDSALRSYAKVREYCTNAGQIAHLSLELMRISIWIGN 164
Query: 105 FDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYEL 164
+ + +AKS E + + Y GL ++++A + FL + T T+ +
Sbjct: 165 YSHVLAFGSRAKSTV--SAAMELTSPIYAYCGLANFCLGDYEEALAHFL-KVETDTSDGI 221
Query: 165 FPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFS 224
Y L ++ D L Q++ E + P L L + + +Y
Sbjct: 222 ITKTDISVYISLCALACWDHKRLIQELERNEEFNALSDLDPSLRRCLQAKCNRKYSLLLD 281
Query: 225 AFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVE 284
+ LD YL P +R +L Y ++ +A F + FI+
Sbjct: 282 TLQQNAQDYSLDMYLAPQLTNLFSLIRERSLLDYLIPYSALPFSKIAVDFHIDENFIEKN 341
Query: 285 LSRFIAAGKLHCKIDKV 301
L I A KL+ K+D +
Sbjct: 342 LLEIIEAKKLNGKVDSL 358
>sp|Q94899|CSN2_DROME COP9 signalosome complex subunit 2 OS=Drosophila melanogaster
GN=alien PE=1 SV=2
Length = 444
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 11/142 (7%)
Query: 193 DAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRT 252
+ PEIL ++ +NS + F + I D+++ H +R +RT
Sbjct: 305 NDPEILA-------MTNLVNSYQNNDINEFETILRQHRSNIMADQFIREHIEDLLRNIRT 357
Query: 253 VVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDA 312
V + + YK++ I +A A + ++ L I + +ID+V VL+ ++ ++
Sbjct: 358 QVLIKLIRPYKNIAIPFIANALNIEPAEVESLLVSCILDDTIKGRIDQVNQVLQLDKINS 417
Query: 313 KNALYQATIKQGDFLLNRIQKL 334
+ Y A K N+IQ L
Sbjct: 418 SASRYNALEKWS----NQIQSL 435
>sp|Q20938|PS11A_CAEEL Probable 26S proteasome regulatory subunit rpn-6.1
OS=Caenorhabditis elegans GN=rpn-6.1 PE=2 SV=2
Length = 438
Score = 38.5 bits (88), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%)
Query: 220 KSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVE 279
K F AF +++++D + HF + + +E Y V IE +A+ G+
Sbjct: 316 KDFQVAFGSFPQELQMDPVVRKHFHSLSERMLEKDLCRIIEPYSFVQIEHVAQQIGIDRS 375
Query: 280 FIDVELSRFIAAGKLHCKIDKVAGVL 305
++ +LS+ I KL +D+ G+L
Sbjct: 376 KVEKKLSQMILDQKLSGSLDQGEGML 401
>sp|Q9HFR0|CSN2_SCHPO COP9 signalosome complex subunit 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn2 PE=1 SV=1
Length = 437
Score = 37.0 bits (84), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 250 VRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNR 309
+R+ V + ++ Y SV + +AK GV++ I+ L I +++ KID V V ++
Sbjct: 356 IRSQVLIELVKPYTSVKLSLLAKKLGVSISIIEQALVGLIIDERVNGKIDMVNEVFTISQ 415
Query: 310 PDAKNALYQATIKQGDFLLNRIQK 333
P KN ++ ++ L N K
Sbjct: 416 P--KNTIHNQLVEDVQKLWNTATK 437
>sp|Q9D8W5|PSD12_MOUSE 26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus
GN=Psmd12 PE=1 SV=4
Length = 456
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%)
Query: 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATI 321
Y +T++ MA+ ++V+ + LS + + K+D++AGV+ RP N L
Sbjct: 370 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWS 429
Query: 322 KQGDFLLNRIQKLSRVI 338
++ + L++ + K + +I
Sbjct: 430 QKLNSLMSLVNKTTHLI 446
>sp|Q98G36|ARLY1_RHILO Argininosuccinate lyase 1 OS=Rhizobium loti (strain MAFF303099)
GN=argH1 PE=3 SV=1
Length = 466
Score = 36.2 bits (82), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 9 MRSPPPPSFGHLCLLLSYLVVISFVMPLSRIADAEENLGESEVREAHLAKSLFYIQIGDK 68
M++ P +FGH C+ +Y+ + F LSR+ DA E + ES + A LA + F I
Sbjct: 163 MQAAQPVTFGHHCM--AYVEM--FARDLSRVRDAIERMDESPLGAAALAGTSFPIDRHRT 218
Query: 69 EKAL 72
KAL
Sbjct: 219 AKAL 222
>sp|Q5RBI3|PSD12_PONAB 26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii
GN=PSMD12 PE=2 SV=3
Length = 456
Score = 35.8 bits (81), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 41/77 (53%)
Query: 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATI 321
Y +T++ MA+ ++V+ + LS + + K+D++AG++ RP N L
Sbjct: 370 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWS 429
Query: 322 KQGDFLLNRIQKLSRVI 338
++ + L++ + K + +I
Sbjct: 430 QKLNSLMSLVNKTTHLI 446
>sp|Q2KJ25|PSD12_BOVIN 26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus
GN=PSMD12 PE=2 SV=3
Length = 456
Score = 35.8 bits (81), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 41/77 (53%)
Query: 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATI 321
Y +T++ MA+ ++V+ + LS + + K+D++AG++ RP N L
Sbjct: 370 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWS 429
Query: 322 KQGDFLLNRIQKLSRVI 338
++ + L++ + K + +I
Sbjct: 430 QKLNSLMSLVNKTTHLI 446
>sp|O00232|PSD12_HUMAN 26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens
GN=PSMD12 PE=1 SV=3
Length = 456
Score = 35.8 bits (81), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 41/77 (53%)
Query: 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATI 321
Y +T++ MA+ ++V+ + LS + + K+D++AG++ RP N L
Sbjct: 370 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWS 429
Query: 322 KQGDFLLNRIQKLSRVI 338
++ + L++ + K + +I
Sbjct: 430 QKLNSLMSLVNKTTHLI 446
>sp|P40512|CSN11_YEAST Cop9 signalosome complex subunit 11 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PCI8 PE=1 SV=1
Length = 444
Score = 35.4 bits (80), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 27/168 (16%)
Query: 135 EGLYCMSTRNF-KKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVD 193
E L CM NF K + + +IS + L YD FI+ + L +
Sbjct: 211 EHLDCM---NFISKEEFIMMVNISVLISIPLDNYDDFIYLSDLKQFFQM----------- 256
Query: 194 APEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDR-YLYPHFRYYMREV-R 251
P L L L + + FF + G +I ++ +L P + + R
Sbjct: 257 ----------TPLLVNCLELLINTNFNKFFKIWHGEINKICMESLFLEPSWSSSAAVIMR 306
Query: 252 TVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKID 299
+Y +L K + ++ G+ +E I EL++ I +G+L+ +ID
Sbjct: 307 CKIYFFYLRISKKLQFSYLSSTLGIDLEDIKEELTKLIISGQLNFEID 354
>sp|O14164|EIF3C_SCHPO Eukaryotic translation initiation factor 3 subunit C
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=nip1 PE=1 SV=2
Length = 918
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVL 305
Y SV++E +A F + V+ + V +SR ++ ++H +D+V G +
Sbjct: 806 YDSVSLEFLATTFDLPVQRVTVIVSRLLSKREIHAALDQVHGAI 849
>sp|Q9LP45|PSD11_ARATH 26S proteasome non-ATPase regulatory subunit 11 OS=Arabidopsis
thaliana GN=RPN6A PE=1 SV=1
Length = 419
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 220 KSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVE 279
K F +A Q++ D ++ H + + +E + V I +A+ G+ ++
Sbjct: 296 KLFENALRDYKAQLEDDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAELIGLPLD 355
Query: 280 FIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVID 339
++ +LS+ I K +D+ AG L +A+Y AT L I + +V+D
Sbjct: 356 HVEKKLSQMILDKKFAGTLDQGAGCLIIFEDPKADAIYSAT-------LETIANMGKVVD 408
>sp|Q6C0Q2|EIF3E_YARLI Eukaryotic translation initiation factor 3 subunit E OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=INT6 PE=3 SV=1
Length = 421
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/134 (19%), Positives = 62/134 (46%), Gaps = 8/134 (5%)
Query: 196 EILTVIGKIPY-----LSEFLNSLY-DCQYKSFFSAFAGLTEQIKLDRYLYPHFRYYMRE 249
+++ V+G+ Y L+ F+ SLY D ++ + A + +K D +L ++
Sbjct: 272 DLVRVVGQEEYEYQDPLTRFVKSLYIDYSFEDAQNQLADCEKVLKQDFFLADSADAFLES 331
Query: 250 VRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNR 309
R ++ + ++ V I +++ ++ E + ++ I ++ KID+ + N
Sbjct: 332 ARKLMSQVYCRVHQRVDIAQLSQTLNLSQEQGEKWIANLIKDSRMDAKIDESDSTVILNH 391
Query: 310 PDAKNALYQATIKQ 323
P ++YQ I++
Sbjct: 392 PSV--SVYQQVIEK 403
>sp|P34481|PS11B_CAEEL Probable 26S proteasome regulatory subunit rpn-6.2
OS=Caenorhabditis elegans GN=rpn-6.2 PE=3 SV=3
Length = 416
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 90/208 (43%), Gaps = 13/208 (6%)
Query: 137 LYCMSTRNFKKAASLFLDSISTFTTY-ELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAP 195
LY R++K + S F ++ F + + + + Y +L I+ L+ ++ A
Sbjct: 209 LYSAEERDYKTSFSYFYEAFEGFASIGDKINATSALKYMILCKIM-LNETEQLAGLLAAK 267
Query: 196 EILTVIG--KIPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTV 253
EI+ +I + ++ K F A A ++ D+ + H + R +
Sbjct: 268 EIVAYQKSPRIIAIRSMADAFRKRSLKDFVKALAEHKIELVEDKVVAVHSQNLERNMLEK 327
Query: 254 VYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG-VLETNRPDA 312
S+ +E Y + + +A+ G+TV ++ ++R I KL ID+ V+ + DA
Sbjct: 328 EISRVIEPYSEIELSYIARVIGMTVPPVERAIARMILDKKLMGSIDQHGDTVVVYPKADA 387
Query: 313 KNALYQATIKQGDFLLNRIQKLSRVIDL 340
N ++ L I++L++ +D+
Sbjct: 388 ANQFTRS--------LKTIRELTKTVDV 407
>sp|A6WXL6|ARLY_OCHA4 Argininosuccinate lyase OS=Ochrobactrum anthropi (strain ATCC 49188
/ DSM 6882 / NCTC 12168) GN=argH PE=3 SV=1
Length = 466
Score = 32.3 bits (72), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 9 MRSPPPPSFGHLCLLLSYLVVISFVMPLSRIADAEENLGESEVREAHLAKSLFYIQIGDK 68
+++ P +FGH C+ +Y+ + F LSR+ DA E + ES + A LA + F I
Sbjct: 163 LQTAQPVTFGHHCM--AYVEM--FGRDLSRVRDAIERMDESPLGAAALAGTGFPIDRHMT 218
Query: 69 EKAL 72
KAL
Sbjct: 219 AKAL 222
>sp|Q8FYA4|ARLY_BRUSU Argininosuccinate lyase OS=Brucella suis biovar 1 (strain 1330)
GN=argH PE=3 SV=1
Length = 466
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 9 MRSPPPPSFGHLCLLLSYLVVISFVMPLSRIADAEENLGESEVREAHLAKSLFYIQIGDK 68
+++ P +FGH C+ +Y+ + F LSR+ DA E + ES + A LA + F I
Sbjct: 163 LQTAQPVTFGHHCM--AYVEM--FGRDLSRVRDAIERMDESPLGAAALAGTGFPIDRHMT 218
Query: 69 EKAL 72
KAL
Sbjct: 219 AKAL 222
>sp|B0CIY4|ARLY_BRUSI Argininosuccinate lyase OS=Brucella suis (strain ATCC 23445 / NCTC
10510) GN=argH PE=3 SV=1
Length = 466
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 9 MRSPPPPSFGHLCLLLSYLVVISFVMPLSRIADAEENLGESEVREAHLAKSLFYIQIGDK 68
+++ P +FGH C+ +Y+ + F LSR+ DA E + ES + A LA + F I
Sbjct: 163 LQTAQPVTFGHHCM--AYVEM--FGRDLSRVRDAIERMDESPLGAAALAGTGFPIDRHMT 218
Query: 69 EKAL 72
KAL
Sbjct: 219 AKAL 222
>sp|A9M968|ARLY_BRUC2 Argininosuccinate lyase OS=Brucella canis (strain ATCC 23365 / NCTC
10854) GN=argH PE=3 SV=1
Length = 466
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 9 MRSPPPPSFGHLCLLLSYLVVISFVMPLSRIADAEENLGESEVREAHLAKSLFYIQIGDK 68
+++ P +FGH C+ +Y+ + F LSR+ DA E + ES + A LA + F I
Sbjct: 163 LQTAQPVTFGHHCM--AYVEM--FGRDLSRVRDAIERMDESPLGAAALAGTGFPIDRHMT 218
Query: 69 EKAL 72
KAL
Sbjct: 219 AKAL 222
>sp|Q92C34|DPO3_LISIN DNA polymerase III PolC-type OS=Listeria innocua serovar 6a (strain
CLIP 11262) GN=polC PE=3 SV=1
Length = 1444
Score = 32.0 bits (71), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 210 FLNSLYDCQYKSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEA 269
F+N+ Y + A + + ++L R+LYPHF+ + T ++ LE + +A
Sbjct: 520 FINTAY--EKVGLEKAKNAVVDTLELARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDA 577
Query: 270 MAKAF 274
A A+
Sbjct: 578 EATAY 582
>sp|Q720A2|DPO3_LISMF DNA polymerase III PolC-type OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=polC PE=3 SV=1
Length = 1444
Score = 32.0 bits (71), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 210 FLNSLYDCQYKSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEA 269
F+N+ Y + A + + ++L R+LYPHF+ + T ++ LE + +A
Sbjct: 520 FINTAY--EKVGLEKAENAVVDTLELARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDA 577
Query: 270 MAKAF 274
A A+
Sbjct: 578 EATAY 582
>sp|A0AIC1|DPO3_LISW6 DNA polymerase III PolC-type OS=Listeria welshimeri serovar 6b
(strain ATCC 35897 / DSM 20650 / SLCC5334) GN=polC PE=3
SV=1
Length = 1444
Score = 32.0 bits (71), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 210 FLNSLYDCQYKSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEA 269
F+N+ Y + A + + ++L R+LYPHF+ + T ++ LE + +A
Sbjct: 520 FINTAY--EKVGLEKADNAVVDTLELARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDA 577
Query: 270 MAKAF 274
A A+
Sbjct: 578 EATAY 582
>sp|Q8Y7G1|DPO3_LISMO DNA polymerase III PolC-type OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=polC PE=3 SV=1
Length = 1444
Score = 32.0 bits (71), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 210 FLNSLYDCQYKSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEA 269
F+N+ Y + A + + ++L R+LYPHF+ + T ++ LE + +A
Sbjct: 520 FINTAY--EKVGLEKAENAVVDTLELARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDA 577
Query: 270 MAKAF 274
A A+
Sbjct: 578 EATAY 582
>sp|Q8YJJ7|ARLY_BRUME Argininosuccinate lyase OS=Brucella melitensis biotype 1 (strain
16M / ATCC 23456 / NCTC 10094) GN=argH PE=3 SV=1
Length = 466
Score = 32.0 bits (71), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 9 MRSPPPPSFGHLCLLLSYLVVISFVMPLSRIADAEENLGESEVREAHLAKSLFYIQIGDK 68
+++ P +FGH C+ +Y+ + F LSR+ DA E + ES + A LA + F I
Sbjct: 163 LQTAQPVTFGHHCM--AYVEM--FGRDLSRVRDAIERIDESPLGAAALAGTGFPIDRHMT 218
Query: 69 EKAL 72
KAL
Sbjct: 219 AKAL 222
>sp|C0RFM4|ARLY_BRUMB Argininosuccinate lyase OS=Brucella melitensis biotype 2 (strain
ATCC 23457) GN=argH PE=3 SV=1
Length = 466
Score = 32.0 bits (71), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 9 MRSPPPPSFGHLCLLLSYLVVISFVMPLSRIADAEENLGESEVREAHLAKSLFYIQIGDK 68
+++ P +FGH C+ +Y+ + F LSR+ DA E + ES + A LA + F I
Sbjct: 163 LQTAQPVTFGHHCM--AYVEM--FGRDLSRVRDAIERIDESPLGAAALAGTGFPIDRHMT 218
Query: 69 EKAL 72
KAL
Sbjct: 219 AKAL 222
>sp|Q57AS3|ARLY_BRUAB Argininosuccinate lyase OS=Brucella abortus biovar 1 (strain 9-941)
GN=argH PE=3 SV=1
Length = 466
Score = 32.0 bits (71), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 9 MRSPPPPSFGHLCLLLSYLVVISFVMPLSRIADAEENLGESEVREAHLAKSLFYIQIGDK 68
+++ P +FGH C+ +Y+ + F LSR+ DA E + ES + A LA + F I
Sbjct: 163 LQTAQPVTFGHHCM--AYVEM--FGRDLSRVRDAIERIDESPLGAAALAGTGFPIDRHMT 218
Query: 69 EKAL 72
KAL
Sbjct: 219 AKAL 222
>sp|Q2YR87|ARLY_BRUA2 Argininosuccinate lyase OS=Brucella abortus (strain 2308) GN=argH
PE=3 SV=1
Length = 466
Score = 32.0 bits (71), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 9 MRSPPPPSFGHLCLLLSYLVVISFVMPLSRIADAEENLGESEVREAHLAKSLFYIQIGDK 68
+++ P +FGH C+ +Y+ + F LSR+ DA E + ES + A LA + F I
Sbjct: 163 LQTAQPVTFGHHCM--AYVEM--FGRDLSRVRDAIERIDESPLGAAALAGTGFPIDRHMT 218
Query: 69 EKAL 72
KAL
Sbjct: 219 AKAL 222
>sp|B2S8N8|ARLY_BRUA1 Argininosuccinate lyase OS=Brucella abortus (strain S19) GN=argH
PE=3 SV=1
Length = 466
Score = 32.0 bits (71), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 9 MRSPPPPSFGHLCLLLSYLVVISFVMPLSRIADAEENLGESEVREAHLAKSLFYIQIGDK 68
+++ P +FGH C+ +Y+ + F LSR+ DA E + ES + A LA + F I
Sbjct: 163 LQTAQPVTFGHHCM--AYVEM--FGRDLSRVRDAIERIDESPLGAAALAGTGFPIDRHMT 218
Query: 69 EKAL 72
KAL
Sbjct: 219 AKAL 222
>sp|Q9QBU0|RDRP_PMTVS Replicase large subunit OS=Potato mop-top virus (isolate
Potato/Sweden/Sw) GN=rep PE=3 SV=3
Length = 1812
Score = 32.0 bits (71), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 46 LGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQ----KMDLVFYTLQLGFF 101
LG +++ + L +F IGD K+ + +V E+ VAV + + D++F L L +
Sbjct: 1726 LGRKDIKNSDLLSEIF-TSIGDNYKSYDDYRVLEALNVAVMERYKLRCDVMFGLLALKKY 1784
Query: 102 YMDFDLISKSIDKAKSLFEEGGDWER 127
FDL + SLF G ++R
Sbjct: 1785 INSFDLFA-------SLFSHKGRYQR 1803
>sp|Q2HBQ2|EIF3E_CHAGB Eukaryotic translation initiation factor 3 subunit E OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=INT6 PE=3 SV=1
Length = 447
Score = 31.6 bits (70), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/108 (19%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Query: 231 EQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIA 290
E ++ D +L H ++ R +++ + + + ++++ ++ G+ + + + I
Sbjct: 340 EVLRSDFFLLAHADDFVDSARHLIFESYCKIHARISLKDLSARLGLNADAAEKWIVNLIR 399
Query: 291 AGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVI 338
+L KID G + N P + ++YQ I++ R Q L+ I
Sbjct: 400 DTRLDAKIDYKEGTVVMNHPPS--SVYQQVIEKTKGGFFRTQVLTAAI 445
>sp|B9KCQ6|PPK_CAMLR Polyphosphate kinase OS=Campylobacter lari (strain RM2100 / D67 /
ATCC BAA-1060) GN=ppk PE=3 SV=1
Length = 697
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 129 NRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTS--------II 180
++LK+Y L ST N+ +++ +S FT+ E + DT F+ +L+ +
Sbjct: 439 DKLKIYNHL---STGNYNASSAKIYTDVSYFTSKEEYSQDTTTFFHILSGYSKSRRLKTL 495
Query: 181 SLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYD 216
S+ +K++++D GK + +N+L D
Sbjct: 496 SMSPKQIKERILDMIATEASHGKDGVIIAKMNALVD 531
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,288,335
Number of Sequences: 539616
Number of extensions: 4369791
Number of successful extensions: 14568
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 14527
Number of HSP's gapped (non-prelim): 61
length of query: 340
length of database: 191,569,459
effective HSP length: 118
effective length of query: 222
effective length of database: 127,894,771
effective search space: 28392639162
effective search space used: 28392639162
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (28.1 bits)