Query 019472
Match_columns 340
No_of_seqs 154 out of 762
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 16:37:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019472.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019472hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_R RPN7, 26S proteasome re 100.0 9.1E-64 3.1E-68 489.6 20.6 333 8-340 54-423 (429)
2 3txn_A 26S proteasome regulato 100.0 9.2E-55 3.2E-59 417.8 27.6 318 12-339 44-384 (394)
3 4b4t_P 26S proteasome regulato 100.0 3E-35 1E-39 288.7 18.6 314 22-339 90-434 (445)
4 4b4t_Q 26S proteasome regulato 100.0 1.9E-32 6.5E-37 263.5 25.2 319 13-339 81-424 (434)
5 4b4t_O 26S proteasome regulato 99.9 3.5E-23 1.2E-27 199.8 21.0 274 60-337 84-383 (393)
6 3t5x_A PCI domain-containing p 99.7 6.9E-16 2.4E-20 135.4 14.1 173 126-312 11-195 (203)
7 4b4t_S RPN3, 26S proteasome re 99.7 1.6E-15 5.4E-20 148.6 17.2 215 89-310 231-448 (523)
8 1ufm_A COP9 complex subunit 4; 99.6 1.9E-16 6.5E-21 118.8 5.0 73 241-313 7-79 (84)
9 3t5v_B Nuclear mRNA export pro 99.4 1.1E-11 3.7E-16 120.8 19.0 235 67-310 141-429 (455)
10 3chm_A COP9 signalosome comple 99.1 5E-10 1.7E-14 94.8 11.6 134 169-314 24-161 (169)
11 4b0z_A RPN12, 26S proteasome r 98.2 4.3E-05 1.5E-09 67.7 15.0 196 97-308 15-227 (229)
12 1qqe_A Vesicular transport pro 98.0 0.001 3.4E-08 60.1 20.2 183 52-240 77-274 (292)
13 4gcn_A Protein STI-1; structur 97.7 0.0011 3.7E-08 52.2 13.5 104 51-157 7-111 (127)
14 3ro3_A PINS homolog, G-protein 97.6 0.0016 5.4E-08 51.3 13.8 107 51-157 8-117 (164)
15 3ro3_A PINS homolog, G-protein 97.6 0.0025 8.6E-08 50.1 14.4 107 51-157 48-157 (164)
16 1wi9_A Protein C20ORF116 homol 97.4 0.0005 1.7E-08 48.7 7.0 59 253-311 10-68 (72)
17 3gw4_A Uncharacterized protein 97.4 0.0037 1.3E-07 51.8 13.6 107 51-157 65-175 (203)
18 2ifu_A Gamma-SNAP; membrane fu 97.4 0.0072 2.5E-07 54.8 16.4 107 51-158 75-184 (307)
19 3qky_A Outer membrane assembly 97.3 0.058 2E-06 46.9 21.5 105 52-159 15-127 (261)
20 3gw4_A Uncharacterized protein 97.2 0.0048 1.6E-07 51.1 12.6 107 51-157 25-135 (203)
21 2xev_A YBGF; tetratricopeptide 97.2 0.0069 2.4E-07 46.4 12.3 103 54-159 4-106 (129)
22 2ifu_A Gamma-SNAP; membrane fu 97.2 0.031 1.1E-06 50.5 18.5 104 52-156 116-222 (307)
23 4gco_A Protein STI-1; structur 97.1 0.0076 2.6E-07 47.2 12.3 100 49-157 10-109 (126)
24 1elr_A TPR2A-domain of HOP; HO 97.1 0.012 4.1E-07 44.5 13.2 103 52-157 4-107 (131)
25 3edt_B KLC 2, kinesin light ch 96.9 0.013 4.3E-07 50.8 13.0 109 50-158 41-156 (283)
26 3rkv_A Putative peptidylprolyl 96.9 0.014 5E-07 47.0 12.4 100 52-157 11-125 (162)
27 3sf4_A G-protein-signaling mod 96.9 0.08 2.7E-06 48.4 18.9 106 53-158 10-116 (406)
28 3q15_A PSP28, response regulat 96.9 0.022 7.6E-07 52.8 14.9 129 50-181 180-311 (378)
29 2dba_A Smooth muscle cell asso 96.9 0.012 4E-07 45.9 11.1 100 52-157 28-127 (148)
30 3q15_A PSP28, response regulat 96.9 0.014 4.6E-07 54.3 13.2 107 51-157 140-250 (378)
31 4a1s_A PINS, partner of inscut 96.9 0.082 2.8E-06 48.8 18.7 108 51-158 47-155 (411)
32 3ulq_A Response regulator aspa 96.8 0.015 5.3E-07 53.9 13.4 106 52-157 143-252 (383)
33 3uq3_A Heat shock protein STI1 96.8 0.13 4.4E-06 43.7 18.5 102 52-157 5-107 (258)
34 3ro2_A PINS homolog, G-protein 96.8 0.023 8E-07 50.1 13.9 105 51-155 182-289 (338)
35 2qfc_A PLCR protein; TPR, HTH, 96.8 0.013 4.4E-07 52.5 12.2 105 52-156 115-223 (293)
36 3u3w_A Transcriptional activat 96.8 0.018 6.1E-07 51.5 13.1 103 54-156 157-264 (293)
37 3upv_A Heat shock protein STI1 96.7 0.024 8.3E-07 43.4 11.8 95 53-156 5-99 (126)
38 3ro2_A PINS homolog, G-protein 96.7 0.042 1.4E-06 48.4 15.0 104 54-157 225-331 (338)
39 3sf4_A G-protein-signaling mod 96.7 0.031 1.1E-06 51.2 14.3 103 54-156 229-334 (406)
40 3nf1_A KLC 1, kinesin light ch 96.7 0.023 8E-07 49.9 12.9 110 49-158 66-182 (311)
41 3nf1_A KLC 1, kinesin light ch 96.7 0.023 7.8E-07 50.0 12.7 107 51-157 110-223 (311)
42 3edt_B KLC 2, kinesin light ch 96.6 0.028 9.4E-07 48.5 12.7 107 51-157 84-197 (283)
43 4a1s_A PINS, partner of inscut 96.6 0.037 1.3E-06 51.2 14.2 103 54-156 265-370 (411)
44 3u4t_A TPR repeat-containing p 96.6 0.31 1.1E-05 41.9 20.5 97 55-157 6-102 (272)
45 3sz7_A HSC70 cochaperone (SGT) 96.6 0.032 1.1E-06 45.0 12.0 97 52-157 11-107 (164)
46 3qky_A Outer membrane assembly 96.5 0.043 1.5E-06 47.8 13.5 108 52-159 52-178 (261)
47 3q49_B STIP1 homology and U bo 96.5 0.045 1.5E-06 42.1 11.9 97 52-157 9-105 (137)
48 3ulq_A Response regulator aspa 96.5 0.029 9.8E-07 52.0 12.4 104 55-158 106-213 (383)
49 2l6j_A TPR repeat-containing p 96.4 0.0039 1.3E-07 46.4 5.0 63 53-118 5-67 (111)
50 1elw_A TPR1-domain of HOP; HOP 96.4 0.033 1.1E-06 41.1 10.2 96 53-157 5-100 (118)
51 4i17_A Hypothetical protein; T 96.3 0.34 1.2E-05 40.8 17.7 100 53-157 43-145 (228)
52 4ga2_A E3 SUMO-protein ligase 96.3 0.014 4.6E-07 47.1 8.1 94 52-154 31-124 (150)
53 2lni_A Stress-induced-phosphop 96.3 0.018 6.2E-07 43.8 8.5 97 52-157 16-112 (133)
54 2c2l_A CHIP, carboxy terminus 96.3 0.038 1.3E-06 49.4 11.6 96 53-157 5-100 (281)
55 2vyi_A SGTA protein; chaperone 96.2 0.055 1.9E-06 40.5 11.0 97 52-157 12-108 (131)
56 1a17_A Serine/threonine protei 96.2 0.047 1.6E-06 43.2 11.0 97 52-157 13-109 (166)
57 3gyz_A Chaperone protein IPGC; 96.2 0.046 1.6E-06 44.5 10.7 97 52-157 36-132 (151)
58 3u3w_A Transcriptional activat 96.1 0.038 1.3E-06 49.3 10.9 103 55-157 118-224 (293)
59 2vgx_A Chaperone SYCD; alterna 96.1 0.055 1.9E-06 43.4 10.8 97 52-157 21-117 (148)
60 1qqe_A Vesicular transport pro 96.1 0.077 2.6E-06 47.4 12.8 106 53-158 38-147 (292)
61 2xcb_A PCRH, regulatory protei 96.1 0.06 2.1E-06 42.4 10.8 96 52-156 18-113 (142)
62 1hh8_A P67PHOX, NCF-2, neutrop 96.1 0.065 2.2E-06 44.7 11.5 103 53-158 38-150 (213)
63 2qfc_A PLCR protein; TPR, HTH, 96.1 0.07 2.4E-06 47.6 12.3 106 51-156 74-182 (293)
64 2ho1_A Type 4 fimbrial biogene 96.0 0.58 2E-05 39.6 20.5 96 54-156 73-168 (252)
65 2fbn_A 70 kDa peptidylprolyl i 96.0 0.1 3.5E-06 43.4 12.6 100 52-157 38-150 (198)
66 2kck_A TPR repeat; tetratricop 96.0 0.076 2.6E-06 38.7 10.5 97 55-158 9-106 (112)
67 3vtx_A MAMA; tetratricopeptide 96.0 0.04 1.4E-06 45.0 9.7 96 53-157 6-101 (184)
68 4b4t_T 26S proteasome regulato 96.0 0.072 2.5E-06 48.1 12.0 155 131-293 61-225 (274)
69 2fo7_A Synthetic consensus TPR 95.9 0.077 2.6E-06 39.7 10.4 95 54-157 3-97 (136)
70 1na0_A Designed protein CTPR3; 95.9 0.079 2.7E-06 39.2 10.2 97 52-157 9-105 (125)
71 1rz4_A Eukaryotic translation 95.8 0.038 1.3E-06 48.5 9.1 120 169-307 64-189 (226)
72 4abn_A Tetratricopeptide repea 95.8 0.78 2.7E-05 44.1 19.5 96 52-157 102-207 (474)
73 2hr2_A Hypothetical protein; a 95.8 0.2 6.8E-06 41.4 12.9 101 55-156 14-129 (159)
74 3ieg_A DNAJ homolog subfamily 95.8 0.74 2.5E-05 40.8 18.1 96 53-157 4-99 (359)
75 3u4t_A TPR repeat-containing p 95.7 0.068 2.3E-06 46.2 10.4 99 54-158 39-137 (272)
76 2vq2_A PILW, putative fimbrial 95.6 0.77 2.6E-05 37.7 20.5 97 52-157 8-105 (225)
77 3ma5_A Tetratricopeptide repea 95.6 0.15 5.1E-06 37.6 10.6 69 53-124 8-76 (100)
78 2ho1_A Type 4 fimbrial biogene 95.6 0.91 3.1E-05 38.4 17.8 98 51-157 36-133 (252)
79 2yhc_A BAMD, UPF0169 lipoprote 95.5 0.15 5.2E-06 43.4 11.9 104 53-160 5-127 (225)
80 1ihg_A Cyclophilin 40; ppiase 95.5 0.15 5.2E-06 47.7 12.5 100 52-157 223-335 (370)
81 1p5q_A FKBP52, FK506-binding p 95.4 0.21 7.3E-06 45.7 13.1 101 51-157 146-258 (336)
82 1kt0_A FKBP51, 51 kDa FK506-bi 95.4 0.18 6.2E-06 48.4 13.1 101 51-157 267-379 (457)
83 4i17_A Hypothetical protein; T 95.3 0.24 8.2E-06 41.8 12.4 98 53-158 8-105 (228)
84 2xev_A YBGF; tetratricopeptide 95.3 0.099 3.4E-06 39.6 9.0 66 53-118 40-105 (129)
85 2fo7_A Synthetic consensus TPR 95.3 0.15 5.2E-06 38.0 10.0 95 53-156 36-130 (136)
86 2q7f_A YRRB protein; TPR, prot 95.3 1 3.5E-05 37.6 16.2 97 52-157 57-153 (243)
87 1a17_A Serine/threonine protei 95.2 0.21 7.2E-06 39.3 10.9 97 52-155 47-143 (166)
88 3hym_B Cell division cycle pro 95.1 0.21 7.2E-06 44.0 11.8 97 52-157 125-221 (330)
89 3ieg_A DNAJ homolog subfamily 95.1 1.6 5.6E-05 38.4 18.9 100 54-158 156-263 (359)
90 2yhc_A BAMD, UPF0169 lipoprote 95.0 0.3 1E-05 41.6 12.1 108 52-159 41-177 (225)
91 3as5_A MAMA; tetratricopeptide 95.0 0.18 6.2E-06 40.1 10.2 96 53-157 43-138 (186)
92 4b4t_Q 26S proteasome regulato 95.0 0.24 8.3E-06 46.0 12.4 105 52-156 55-202 (434)
93 2e2e_A Formate-dependent nitri 95.0 0.15 5.1E-06 41.3 9.7 98 52-158 44-144 (177)
94 1xn7_A Hypothetical protein YH 95.0 0.035 1.2E-06 40.3 4.9 42 253-294 5-46 (78)
95 3mv2_B Coatomer subunit epsilo 94.9 0.2 7E-06 45.9 11.3 101 55-159 103-208 (310)
96 1hxi_A PEX5, peroxisome target 94.9 0.25 8.7E-06 37.8 10.3 94 55-157 20-113 (121)
97 3fp2_A TPR repeat-containing p 94.9 0.86 2.9E-05 43.3 16.2 96 52-156 310-405 (537)
98 1hz4_A MALT regulatory protein 94.8 0.35 1.2E-05 44.1 12.8 106 53-158 15-122 (373)
99 4g1t_A Interferon-induced prot 94.8 0.091 3.1E-06 49.6 9.0 103 54-156 53-165 (472)
100 3uq3_A Heat shock protein STI1 94.8 1.5 5.3E-05 36.6 19.1 106 52-158 38-168 (258)
101 3as5_A MAMA; tetratricopeptide 94.8 0.23 8E-06 39.4 10.2 96 52-156 76-171 (186)
102 1hz4_A MALT regulatory protein 94.7 0.87 3E-05 41.4 15.2 107 52-158 53-164 (373)
103 1xnf_A Lipoprotein NLPI; TPR, 94.7 0.22 7.7E-06 42.7 10.5 98 51-157 42-139 (275)
104 2k02_A Ferrous iron transport 94.6 0.048 1.6E-06 40.4 5.0 45 253-297 5-49 (87)
105 2y4t_A DNAJ homolog subfamily 94.6 2.2 7.5E-05 39.4 17.9 98 55-157 180-285 (450)
106 2q7f_A YRRB protein; TPR, prot 94.5 0.21 7.1E-06 42.0 9.6 97 52-157 91-187 (243)
107 2pl2_A Hypothetical conserved 94.4 0.26 8.9E-06 41.8 10.1 92 53-154 119-210 (217)
108 2y4t_A DNAJ homolog subfamily 94.4 0.48 1.6E-05 44.0 12.8 104 52-157 211-323 (450)
109 3vtx_A MAMA; tetratricopeptide 94.4 0.29 9.8E-06 39.7 9.9 97 52-157 39-135 (184)
110 3n71_A Histone lysine methyltr 94.3 0.38 1.3E-05 47.0 12.1 104 51-155 350-461 (490)
111 2xpi_A Anaphase-promoting comp 94.3 0.42 1.4E-05 46.4 12.5 97 52-157 407-503 (597)
112 3k9i_A BH0479 protein; putativ 94.2 0.27 9.4E-06 37.0 8.8 67 49-118 24-90 (117)
113 2kat_A Uncharacterized protein 94.1 0.55 1.9E-05 34.9 10.5 66 52-120 19-84 (115)
114 2gw1_A Mitochondrial precursor 94.1 0.5 1.7E-05 44.5 12.5 95 52-156 6-100 (514)
115 4f3v_A ESX-1 secretion system 94.1 0.77 2.6E-05 41.5 12.9 120 52-181 102-221 (282)
116 2pl2_A Hypothetical conserved 94.1 2.3 7.9E-05 35.7 16.0 95 54-157 7-112 (217)
117 3hym_B Cell division cycle pro 94.0 2.8 9.5E-05 36.5 18.4 97 53-158 91-188 (330)
118 1na3_A Designed protein CTPR2; 94.0 0.45 1.6E-05 33.2 9.3 64 52-118 9-72 (91)
119 2v5f_A Prolyl 4-hydroxylase su 94.0 0.32 1.1E-05 36.4 8.6 64 55-118 8-75 (104)
120 1hh8_A P67PHOX, NCF-2, neutrop 93.9 0.17 5.8E-06 42.0 7.7 93 54-158 8-100 (213)
121 4eqf_A PEX5-related protein; a 93.8 0.44 1.5E-05 43.1 11.1 94 54-156 215-308 (365)
122 3cv0_A Peroxisome targeting si 93.8 0.45 1.6E-05 41.7 10.9 97 52-157 172-268 (327)
123 2jt1_A PEFI protein; solution 93.8 0.11 3.9E-06 37.4 5.5 45 251-295 5-55 (77)
124 3k9i_A BH0479 protein; putativ 93.7 0.17 5.7E-06 38.3 6.6 89 64-158 2-90 (117)
125 4ga2_A E3 SUMO-protein ligase 93.6 0.14 4.8E-06 40.9 6.5 92 57-157 2-93 (150)
126 2if4_A ATFKBP42; FKBP-like, al 93.5 0.31 1.1E-05 44.7 9.3 100 52-157 179-292 (338)
127 1elr_A TPR2A-domain of HOP; HO 93.4 0.43 1.5E-05 35.4 8.7 67 52-118 38-108 (131)
128 4gyw_A UDP-N-acetylglucosamine 93.4 0.44 1.5E-05 48.9 11.2 95 53-156 10-104 (723)
129 4eqf_A PEX5-related protein; a 93.4 4.2 0.00014 36.4 18.8 101 54-157 101-205 (365)
130 3cv0_A Peroxisome targeting si 93.3 0.54 1.8E-05 41.2 10.3 93 56-157 140-234 (327)
131 3mkr_A Coatomer subunit epsilo 93.2 4.2 0.00014 36.0 19.0 91 54-158 103-195 (291)
132 4gcn_A Protein STI-1; structur 93.2 1.2 3.9E-05 34.2 11.0 78 52-132 42-123 (127)
133 2kck_A TPR repeat; tetratricop 93.0 0.31 1.1E-05 35.2 7.1 64 53-117 41-105 (112)
134 1fch_A Peroxisomal targeting s 93.0 0.53 1.8E-05 42.3 10.1 97 52-157 217-313 (368)
135 2xpi_A Anaphase-promoting comp 92.9 0.57 1.9E-05 45.4 10.8 102 53-157 442-544 (597)
136 3urz_A Uncharacterized protein 92.8 1.3 4.4E-05 37.0 11.7 95 54-157 6-116 (208)
137 3mkr_A Coatomer subunit epsilo 92.8 3.8 0.00013 36.3 15.4 99 52-158 130-229 (291)
138 1fch_A Peroxisomal targeting s 92.7 5.2 0.00018 35.6 20.9 63 52-117 98-160 (368)
139 2vq2_A PILW, putative fimbrial 92.6 3.5 0.00012 33.5 20.1 100 52-158 42-142 (225)
140 2vsy_A XCC0866; transferase, g 92.3 0.97 3.3E-05 44.1 11.7 61 54-117 25-85 (568)
141 3n71_A Histone lysine methyltr 92.3 1.4 4.8E-05 42.9 12.5 102 55-157 312-421 (490)
142 3upv_A Heat shock protein STI1 92.3 0.94 3.2E-05 34.1 9.3 65 52-119 38-102 (126)
143 1qgp_A Protein (double strande 92.2 0.51 1.7E-05 33.8 7.0 54 254-308 18-74 (77)
144 4gyw_A UDP-N-acetylglucosamine 92.2 0.85 2.9E-05 46.7 11.3 97 52-157 43-139 (723)
145 3urz_A Uncharacterized protein 92.1 1.8 6.2E-05 36.1 11.6 59 57-118 59-117 (208)
146 3gyz_A Chaperone protein IPGC; 92.1 1.4 4.9E-05 35.3 10.5 64 52-118 70-133 (151)
147 1xnf_A Lipoprotein NLPI; TPR, 92.0 0.68 2.3E-05 39.6 9.0 97 52-158 77-173 (275)
148 2vyi_A SGTA protein; chaperone 92.0 1.1 3.8E-05 32.9 9.3 64 52-118 46-109 (131)
149 1ouv_A Conserved hypothetical 91.8 1.5 5.1E-05 37.9 11.2 92 53-157 7-106 (273)
150 2dba_A Smooth muscle cell asso 91.8 1.5 5.1E-05 33.3 10.0 64 52-118 65-128 (148)
151 3sz7_A HSC70 cochaperone (SGT) 91.7 1 3.5E-05 35.8 9.3 65 52-119 45-109 (164)
152 2gw1_A Mitochondrial precursor 91.7 0.82 2.8E-05 43.0 9.9 96 52-156 304-399 (514)
153 4gco_A Protein STI-1; structur 91.5 1.1 3.7E-05 34.5 8.9 64 52-118 47-110 (126)
154 3fp2_A TPR repeat-containing p 91.5 1.1 3.7E-05 42.6 10.6 97 52-157 276-372 (537)
155 1qbj_A Protein (double-strande 91.3 1 3.6E-05 32.5 7.8 55 255-310 15-72 (81)
156 2kc7_A BFR218_protein; tetratr 91.2 1.4 4.7E-05 31.5 8.7 60 56-118 4-64 (99)
157 1na0_A Designed protein CTPR3; 91.1 1.6 5.5E-05 31.7 9.3 63 53-118 44-106 (125)
158 2xcb_A PCRH, regulatory protei 91.0 1.4 4.7E-05 34.2 9.1 65 52-119 52-116 (142)
159 1elw_A TPR1-domain of HOP; HOP 90.9 1.5 5E-05 31.6 8.8 63 52-117 38-100 (118)
160 1sfx_A Conserved hypothetical 90.9 2.2 7.4E-05 31.4 9.8 72 258-331 28-101 (109)
161 3q49_B STIP1 homology and U bo 90.8 1.4 4.9E-05 33.2 8.9 65 52-119 43-107 (137)
162 3qwp_A SET and MYND domain-con 90.7 2.7 9.4E-05 40.0 12.6 100 57-157 292-399 (429)
163 3txn_A 26S proteasome regulato 90.5 3.9 0.00013 38.6 13.2 135 53-188 20-198 (394)
164 1w3b_A UDP-N-acetylglucosamine 90.4 2.8 9.6E-05 38.0 12.0 97 52-157 203-299 (388)
165 2vgx_A Chaperone SYCD; alterna 90.3 1.7 5.7E-05 34.4 9.2 65 52-119 55-119 (148)
166 2lni_A Stress-induced-phosphop 90.3 1.2 4.3E-05 33.0 8.0 64 52-118 50-113 (133)
167 2vsy_A XCC0866; transferase, g 90.2 1.3 4.4E-05 43.3 10.0 97 52-157 57-156 (568)
168 1w3b_A UDP-N-acetylglucosamine 90.2 1.3 4.6E-05 40.2 9.6 63 52-117 67-129 (388)
169 3qww_A SET and MYND domain-con 89.8 3 0.0001 39.9 12.0 94 63-157 309-410 (433)
170 1ouv_A Conserved hypothetical 89.6 3.4 0.00012 35.5 11.4 92 53-157 39-142 (273)
171 1hxi_A PEX5, peroxisome target 89.6 1.3 4.4E-05 33.7 7.7 63 52-117 51-113 (121)
172 3rkv_A Putative peptidylprolyl 89.6 1.8 6.2E-05 34.2 8.9 64 52-118 63-126 (162)
173 4abn_A Tetratricopeptide repea 89.5 0.57 2E-05 45.0 6.7 96 52-157 137-249 (474)
174 3qww_A SET and MYND domain-con 89.4 1.9 6.4E-05 41.3 10.1 71 51-121 339-414 (433)
175 1p5q_A FKBP52, FK506-binding p 89.3 3.2 0.00011 37.7 11.4 90 52-150 196-285 (336)
176 2heo_A Z-DNA binding protein 1 89.1 0.77 2.6E-05 31.8 5.4 42 255-296 15-57 (67)
177 3qwp_A SET and MYND domain-con 88.7 3 0.0001 39.8 11.0 71 51-121 328-403 (429)
178 3ffl_A Anaphase-promoting comp 88.2 8.6 0.00029 31.7 11.9 103 8-110 15-143 (167)
179 1wao_1 Serine/threonine protei 88.0 0.63 2.2E-05 45.0 5.8 97 52-155 40-136 (477)
180 3rjv_A Putative SEL1 repeat pr 87.9 3.9 0.00013 34.2 10.2 92 52-157 18-117 (212)
181 2fbn_A 70 kDa peptidylprolyl i 87.8 2.6 8.9E-05 34.5 8.9 63 53-118 89-151 (198)
182 3qou_A Protein YBBN; thioredox 87.5 3.5 0.00012 36.4 10.1 60 53-115 118-177 (287)
183 1kt0_A FKBP51, 51 kDa FK506-bi 87.5 3.2 0.00011 39.5 10.5 94 52-154 317-410 (457)
184 3tqn_A Transcriptional regulat 87.1 1.6 5.5E-05 33.4 6.6 64 243-308 11-75 (113)
185 1ub9_A Hypothetical protein PH 86.8 6.3 0.00021 28.5 9.7 54 249-303 16-69 (100)
186 3neu_A LIN1836 protein; struct 86.7 3.5 0.00012 32.1 8.5 64 243-308 15-79 (125)
187 1wao_1 Serine/threonine protei 86.6 1.4 4.9E-05 42.4 7.5 95 55-158 9-103 (477)
188 4ham_A LMO2241 protein; struct 86.2 8.2 0.00028 30.2 10.6 65 243-309 16-81 (134)
189 4f3v_A ESX-1 secretion system 86.1 4.7 0.00016 36.2 10.1 100 54-157 137-236 (282)
190 2b0l_A GTP-sensing transcripti 86.0 2.6 8.9E-05 31.7 7.1 57 251-308 30-87 (102)
191 2pzi_A Probable serine/threoni 86.0 4.3 0.00015 40.9 10.9 64 52-118 433-496 (681)
192 2htj_A P fimbrial regulatory p 85.6 1.8 6E-05 30.8 5.8 42 255-296 5-46 (81)
193 3by6_A Predicted transcription 85.4 1.7 5.9E-05 34.0 6.1 64 243-308 13-77 (126)
194 2if4_A ATFKBP42; FKBP-like, al 84.9 1.5 5.3E-05 39.9 6.5 62 54-118 232-293 (338)
195 1q1h_A TFE, transcription fact 84.9 0.5 1.7E-05 35.8 2.6 71 236-306 5-77 (110)
196 3t5v_A Nuclear mRNA export pro 84.5 1.8 6.2E-05 39.7 6.6 64 217-285 177-246 (316)
197 3r0a_A Putative transcriptiona 84.3 10 0.00034 29.2 10.1 70 265-334 43-114 (123)
198 3i4p_A Transcriptional regulat 84.1 2.9 0.0001 34.0 7.2 50 253-302 6-58 (162)
199 2oqg_A Possible transcriptiona 83.9 11 0.00037 28.0 10.0 38 262-299 32-69 (114)
200 2pg4_A Uncharacterized protein 83.1 4.7 0.00016 29.3 7.3 57 236-295 4-62 (95)
201 2ia0_A Putative HTH-type trans 82.7 4 0.00014 33.6 7.5 47 255-301 22-71 (171)
202 2ond_A Cleavage stimulation fa 82.6 7.3 0.00025 34.4 9.9 96 53-158 100-198 (308)
203 2d1h_A ST1889, 109AA long hypo 82.4 9.8 0.00033 27.7 9.1 49 254-302 26-74 (109)
204 1ihg_A Cyclophilin 40; ppiase 82.3 5.4 0.00019 36.9 9.2 64 52-118 273-336 (370)
205 1v4r_A Transcriptional repress 81.8 0.68 2.3E-05 34.7 2.2 64 243-308 13-77 (102)
206 2cfx_A HTH-type transcriptiona 81.8 3 0.0001 33.0 6.3 48 254-301 9-59 (144)
207 2ek5_A Predicted transcription 81.5 3.1 0.00011 32.7 6.1 64 243-308 6-70 (129)
208 2ond_A Cleavage stimulation fa 81.3 6.1 0.00021 34.9 8.8 100 55-159 171-271 (308)
209 3rjv_A Putative SEL1 repeat pr 80.2 16 0.00055 30.2 10.7 60 52-117 50-117 (212)
210 2e2e_A Formate-dependent nitri 79.9 7.1 0.00024 30.9 8.0 63 53-118 79-144 (177)
211 2cg4_A Regulatory protein ASNC 79.4 3.3 0.00011 33.1 5.7 48 255-302 13-63 (152)
212 4g1t_A Interferon-induced prot 79.3 2.7 9.4E-05 39.1 6.0 63 55-117 337-400 (472)
213 2h6f_A Protein farnesyltransfe 79.0 8.4 0.00029 35.9 9.3 63 52-117 97-160 (382)
214 2c2l_A CHIP, carboxy terminus 79.0 8 0.00028 33.8 8.8 64 52-118 38-101 (281)
215 2pzi_A Probable serine/threoni 78.8 4.1 0.00014 41.0 7.5 95 52-156 467-561 (681)
216 2dbb_A Putative HTH-type trans 78.5 2.8 9.6E-05 33.4 5.1 48 254-301 13-63 (151)
217 1xi4_A Clathrin heavy chain; a 78.2 8.1 0.00028 42.6 9.7 58 52-117 1105-1162(1630)
218 2p5v_A Transcriptional regulat 78.1 4.1 0.00014 32.9 6.0 48 254-301 14-64 (162)
219 2hr2_A Hypothetical protein; a 78.0 15 0.00052 29.9 9.4 65 54-119 59-132 (159)
220 3c7j_A Transcriptional regulat 78.0 4.2 0.00014 35.3 6.4 65 241-307 26-90 (237)
221 3cuo_A Uncharacterized HTH-typ 77.6 9.6 0.00033 27.4 7.5 51 250-301 25-75 (99)
222 3ax2_A Mitochondrial import re 77.5 8.7 0.0003 27.1 6.7 45 49-93 14-58 (73)
223 3mv2_B Coatomer subunit epsilo 77.5 33 0.0011 31.0 12.5 125 51-182 135-269 (310)
224 2r5s_A Uncharacterized protein 77.4 8.3 0.00028 30.7 7.8 62 53-115 109-170 (176)
225 2h6f_A Protein farnesyltransfe 77.3 7.7 0.00026 36.1 8.5 97 52-157 131-228 (382)
226 2fbi_A Probable transcriptiona 76.9 11 0.00037 28.9 8.0 49 257-305 43-91 (142)
227 2e1c_A Putative HTH-type trans 76.8 3.8 0.00013 33.8 5.5 48 254-301 31-81 (171)
228 2xm6_A Protein corresponding t 76.6 20 0.00068 33.8 11.4 90 54-156 77-178 (490)
229 2nnn_A Probable transcriptiona 76.3 13 0.00044 28.4 8.4 43 262-304 50-92 (140)
230 2pn6_A ST1022, 150AA long hypo 76.3 6.9 0.00024 31.0 6.8 47 255-301 8-57 (150)
231 1oyi_A Double-stranded RNA-bin 75.9 3.4 0.00011 29.9 4.2 41 255-296 22-62 (82)
232 2v79_A DNA replication protein 75.5 7.9 0.00027 30.6 6.8 56 263-321 50-107 (135)
233 3jth_A Transcription activator 75.3 12 0.00043 27.0 7.6 57 248-306 22-78 (98)
234 2xm6_A Protein corresponding t 75.1 30 0.001 32.5 12.2 91 53-156 112-214 (490)
235 3f6o_A Probable transcriptiona 74.5 9.8 0.00034 28.9 7.0 55 244-300 13-67 (118)
236 2hzt_A Putative HTH-type trans 74.5 15 0.0005 27.3 7.9 43 262-304 25-68 (107)
237 1y0u_A Arsenical resistance op 74.4 7.9 0.00027 28.1 6.2 48 247-297 29-76 (96)
238 2w25_A Probable transcriptiona 74.3 6.5 0.00022 31.2 6.2 47 255-301 12-61 (150)
239 1jgs_A Multiple antibiotic res 74.2 15 0.00051 28.0 8.2 43 262-304 46-88 (138)
240 1i1g_A Transcriptional regulat 74.0 4.2 0.00014 31.8 4.9 42 255-296 9-50 (141)
241 2a61_A Transcriptional regulat 74.0 16 0.00055 28.1 8.4 48 258-305 41-88 (145)
242 2cyy_A Putative HTH-type trans 73.6 4.3 0.00015 32.4 4.9 47 255-301 12-61 (151)
243 2qvo_A Uncharacterized protein 73.5 12 0.00041 27.1 7.0 44 265-308 31-74 (95)
244 4b4t_P 26S proteasome regulato 73.4 16 0.00054 34.8 9.7 75 52-126 177-255 (445)
245 3bpv_A Transcriptional regulat 73.0 22 0.00076 26.9 9.0 50 257-306 36-85 (138)
246 2gxg_A 146AA long hypothetical 72.8 16 0.00056 28.0 8.2 47 256-303 43-89 (146)
247 3bee_A Putative YFRE protein; 72.7 6.7 0.00023 28.5 5.4 31 52-82 43-73 (93)
248 3k0l_A Repressor protein; heli 72.6 10 0.00035 30.2 7.0 47 258-304 54-100 (162)
249 2rdp_A Putative transcriptiona 72.3 16 0.00056 28.2 8.2 43 262-304 54-96 (150)
250 3nqo_A MARR-family transcripti 72.3 27 0.00092 28.6 9.8 44 261-304 54-97 (189)
251 1klx_A Cysteine rich protein B 72.2 18 0.00061 27.8 8.3 87 58-157 31-125 (138)
252 1lj9_A Transcriptional regulat 72.2 14 0.00047 28.5 7.6 46 259-304 38-83 (144)
253 1tbx_A ORF F-93, hypothetical 71.9 24 0.00083 25.4 8.5 52 257-308 15-70 (99)
254 3ihu_A Transcriptional regulat 71.9 10 0.00036 32.1 7.3 64 243-308 18-81 (222)
255 2cru_A Programmed cell death p 71.7 2 6.9E-05 33.3 2.3 53 247-299 35-87 (118)
256 3tgn_A ADC operon repressor AD 71.7 16 0.00055 28.1 7.9 50 255-305 43-92 (146)
257 1xmk_A Double-stranded RNA-spe 71.6 4.6 0.00016 29.0 4.1 45 250-295 12-57 (79)
258 1xi4_A Clathrin heavy chain; a 71.3 25 0.00087 38.9 11.3 45 36-80 1118-1162(1630)
259 2r5s_A Uncharacterized protein 71.2 4.9 0.00017 32.2 4.8 57 55-114 9-65 (176)
260 2p5k_A Arginine repressor; DNA 71.0 18 0.00061 23.7 7.0 51 250-305 5-60 (64)
261 4a0z_A Transcription factor FA 70.6 5.2 0.00018 33.7 4.9 46 247-292 9-54 (190)
262 2kko_A Possible transcriptiona 70.5 7.3 0.00025 29.2 5.3 52 248-301 24-75 (108)
263 2fbh_A Transcriptional regulat 70.3 25 0.00086 26.8 8.8 44 260-303 48-91 (146)
264 3bja_A Transcriptional regulat 70.2 12 0.0004 28.6 6.7 47 258-304 41-87 (139)
265 3f8m_A GNTR-family protein tra 70.2 12 0.0004 32.7 7.3 62 243-309 16-78 (248)
266 3sxy_A Transcriptional regulat 70.0 7.5 0.00026 33.0 5.9 64 243-308 14-77 (218)
267 1r1u_A CZRA, repressor protein 70.0 21 0.00072 26.3 7.9 50 249-300 26-75 (106)
268 3pqk_A Biofilm growth-associat 69.8 20 0.00069 26.1 7.6 61 246-308 20-80 (102)
269 2fh0_A Hypothetical 16.0 kDa p 69.5 0.88 3E-05 32.9 -0.2 49 251-299 7-55 (81)
270 2frh_A SARA, staphylococcal ac 69.1 18 0.0006 27.6 7.4 67 263-331 52-121 (127)
271 2wv0_A YVOA, HTH-type transcri 69.1 14 0.00048 32.1 7.6 65 243-309 12-77 (243)
272 2l0k_A Stage III sporulation p 69.0 6 0.00021 29.2 4.4 35 251-286 8-42 (93)
273 3eco_A MEPR; mutlidrug efflux 69.0 15 0.00051 28.1 7.1 42 263-304 46-87 (139)
274 3dv8_A Transcriptional regulat 69.0 28 0.00097 28.6 9.4 43 264-310 169-211 (220)
275 2eth_A Transcriptional regulat 68.5 20 0.0007 28.0 8.0 47 258-304 52-98 (154)
276 3bdd_A Regulatory protein MARR 68.5 15 0.00051 28.1 7.0 47 257-303 38-84 (142)
277 3ech_A MEXR, multidrug resista 68.5 7.6 0.00026 30.1 5.3 48 258-305 45-92 (142)
278 3bj6_A Transcriptional regulat 68.2 15 0.0005 28.6 7.0 48 256-303 46-93 (152)
279 3hsr_A HTH-type transcriptiona 68.1 9.8 0.00034 29.4 5.8 49 256-304 42-90 (140)
280 3nrv_A Putative transcriptiona 67.9 14 0.00047 28.7 6.7 47 258-304 48-94 (148)
281 2l6j_A TPR repeat-containing p 67.8 15 0.00052 25.9 6.5 33 52-84 38-70 (111)
282 2hr3_A Probable transcriptiona 67.8 19 0.00065 27.7 7.5 42 262-303 48-89 (147)
283 3cjn_A Transcriptional regulat 67.8 18 0.00062 28.5 7.6 47 258-304 60-106 (162)
284 3lwf_A LIN1550 protein, putati 67.4 16 0.00056 29.6 7.2 46 263-308 43-88 (159)
285 3oop_A LIN2960 protein; protei 67.3 35 0.0012 26.0 9.1 46 258-303 45-90 (143)
286 2ooe_A Cleavage stimulation fa 67.2 32 0.0011 32.7 10.5 98 53-158 322-420 (530)
287 2nyx_A Probable transcriptiona 67.0 23 0.00077 28.3 8.0 43 262-304 57-99 (168)
288 1z7u_A Hypothetical protein EF 67.0 36 0.0012 25.3 8.9 44 263-306 34-78 (112)
289 3dkw_A DNR protein; CRP-FNR, H 66.8 52 0.0018 27.0 11.5 44 263-310 177-220 (227)
290 1on2_A Transcriptional regulat 66.7 24 0.00081 27.3 7.9 49 257-308 15-63 (142)
291 2hs5_A Putative transcriptiona 66.6 12 0.00041 32.3 6.6 64 243-308 30-93 (239)
292 4ev0_A Transcription regulator 66.5 33 0.0011 28.0 9.3 45 262-310 161-205 (216)
293 3ic7_A Putative transcriptiona 66.1 2.4 8.2E-05 33.1 1.7 64 243-308 13-77 (126)
294 3s2w_A Transcriptional regulat 66.1 24 0.00084 27.7 8.0 43 262-304 62-104 (159)
295 1s3j_A YUSO protein; structura 65.4 38 0.0013 26.2 9.0 47 257-303 44-90 (155)
296 2bv6_A MGRA, HTH-type transcri 64.9 13 0.00044 28.6 5.9 48 256-303 43-90 (142)
297 2fa5_A Transcriptional regulat 64.7 17 0.00057 28.7 6.7 43 262-304 61-103 (162)
298 1r1t_A Transcriptional repress 64.6 36 0.0012 25.9 8.4 48 250-299 47-94 (122)
299 3ryp_A Catabolite gene activat 64.4 43 0.0015 27.1 9.6 42 264-309 167-208 (210)
300 1hw1_A FADR, fatty acid metabo 64.3 12 0.00042 31.9 6.2 63 243-307 9-72 (239)
301 3ffl_A Anaphase-promoting comp 64.1 26 0.00089 28.8 7.7 68 89-156 20-90 (167)
302 2v5f_A Prolyl 4-hydroxylase su 64.0 30 0.001 25.0 7.6 68 89-156 5-73 (104)
303 1eij_A Hypothetical protein MT 64.0 1 3.6E-05 32.5 -0.7 46 251-299 9-57 (80)
304 1na3_A Designed protein CTPR2; 63.7 26 0.00089 23.5 6.9 31 52-82 43-73 (91)
305 3f3x_A Transcriptional regulat 63.7 23 0.00079 27.2 7.3 44 262-306 49-92 (144)
306 3edp_A LIN2111 protein; APC883 63.6 11 0.00038 32.6 5.8 66 243-310 11-77 (236)
307 1klx_A Cysteine rich protein B 63.6 47 0.0016 25.3 9.8 61 52-117 57-125 (138)
308 1ku9_A Hypothetical protein MJ 63.6 31 0.0011 26.3 8.1 41 263-303 40-80 (152)
309 3t8r_A Staphylococcus aureus C 63.1 18 0.00063 28.5 6.6 47 263-310 27-73 (143)
310 1sfu_A 34L protein; protein/Z- 63.0 17 0.00058 25.7 5.4 42 255-296 20-61 (75)
311 1u2w_A CADC repressor, cadmium 62.7 34 0.0012 25.9 7.9 51 248-299 41-91 (122)
312 3qou_A Protein YBBN; thioredox 62.6 29 0.001 30.2 8.5 54 59-115 192-245 (287)
313 1om2_A Protein (mitochondrial 62.5 22 0.00076 26.3 6.3 45 49-93 17-61 (95)
314 1j5y_A Transcriptional regulat 62.4 15 0.00053 30.3 6.2 48 248-295 19-68 (187)
315 4hbl_A Transcriptional regulat 62.2 14 0.00048 28.8 5.8 48 257-304 48-95 (149)
316 1ylf_A RRF2 family protein; st 62.2 27 0.00093 27.6 7.5 39 261-299 27-65 (149)
317 1ft9_A Carbon monoxide oxidati 62.1 42 0.0014 27.7 9.1 32 264-295 163-194 (222)
318 1tc3_C Protein (TC3 transposas 62.0 11 0.00036 22.9 4.1 27 262-288 19-45 (51)
319 3kp7_A Transcriptional regulat 61.9 15 0.00052 28.6 5.9 48 256-304 44-93 (151)
320 2kc7_A BFR218_protein; tetratr 61.4 26 0.0009 24.2 6.7 30 54-83 37-66 (99)
321 1r7j_A Conserved hypothetical 61.1 38 0.0013 24.7 7.6 33 265-297 21-53 (95)
322 4g26_A Pentatricopeptide repea 61.0 71 0.0024 30.7 11.6 93 54-155 107-201 (501)
323 2fsw_A PG_0823 protein; alpha- 60.9 34 0.0012 25.2 7.4 45 262-306 36-81 (107)
324 1uly_A Hypothetical protein PH 60.8 59 0.002 27.0 9.7 51 245-297 16-66 (192)
325 2gau_A Transcriptional regulat 60.8 50 0.0017 27.4 9.4 43 263-309 179-221 (232)
326 3eet_A Putative GNTR-family tr 60.5 15 0.00052 32.5 6.2 65 243-309 31-96 (272)
327 2fmy_A COOA, carbon monoxide o 60.4 55 0.0019 26.8 9.6 43 263-309 166-209 (220)
328 3e6m_A MARR family transcripti 60.3 16 0.00053 29.0 5.8 47 262-308 65-114 (161)
329 3ma5_A Tetratricopeptide repea 60.3 11 0.00036 27.1 4.3 30 53-82 42-71 (100)
330 3bwg_A Uncharacterized HTH-typ 60.3 18 0.00061 31.2 6.5 63 244-308 8-71 (239)
331 2y75_A HTH-type transcriptiona 60.0 33 0.0011 26.2 7.4 35 263-297 25-59 (129)
332 3cdh_A Transcriptional regulat 59.9 20 0.0007 27.9 6.4 48 256-303 49-96 (155)
333 4b8x_A SCO5413, possible MARR- 59.8 25 0.00086 27.5 6.9 45 260-304 47-91 (147)
334 2xvc_A ESCRT-III, SSO0910; cel 59.4 13 0.00044 24.8 4.0 43 253-295 13-56 (59)
335 1nzn_A CGI-135 protein, fissio 59.3 23 0.00079 27.6 6.3 33 50-82 72-104 (126)
336 2vkj_A TM1634; membrane protei 59.0 25 0.00087 25.7 5.9 46 52-97 53-100 (106)
337 1b89_A Protein (clathrin heavy 59.0 18 0.0006 34.7 6.6 18 139-156 217-234 (449)
338 3bro_A Transcriptional regulat 58.6 26 0.0009 26.6 6.7 40 264-303 50-89 (141)
339 2ooe_A Cleavage stimulation fa 58.4 28 0.00097 33.1 8.2 88 63-155 402-489 (530)
340 3u64_A Protein TP_0956; tetrat 57.6 30 0.001 31.2 7.6 64 54-119 201-270 (301)
341 2qww_A Transcriptional regulat 57.3 21 0.00071 27.8 6.0 42 262-303 53-96 (154)
342 3deu_A Transcriptional regulat 57.1 26 0.00088 28.0 6.6 41 263-303 67-107 (166)
343 3hug_A RNA polymerase sigma fa 56.8 17 0.00059 26.0 4.9 36 251-289 43-78 (92)
344 3g3z_A NMB1585, transcriptiona 56.5 17 0.00058 28.0 5.3 46 258-303 39-84 (145)
345 1yyv_A Putative transcriptiona 56.3 67 0.0023 24.7 9.8 45 262-306 46-91 (131)
346 3kcc_A Catabolite gene activat 56.2 70 0.0024 27.3 9.8 41 264-308 217-257 (260)
347 2qlz_A Transcription factor PF 55.4 98 0.0034 26.6 10.4 45 261-308 175-219 (232)
348 2di3_A Bacterial regulatory pr 54.8 19 0.00065 30.8 5.7 67 243-309 6-75 (239)
349 2pex_A Transcriptional regulat 54.5 23 0.00079 27.5 5.8 46 258-303 55-100 (153)
350 2kat_A Uncharacterized protein 54.0 42 0.0014 24.0 6.9 79 70-157 3-81 (115)
351 2jxn_A Uncharacterized protein 53.6 3 0.0001 32.8 0.2 48 252-299 43-90 (127)
352 3b73_A PHIH1 repressor-like pr 53.5 20 0.00067 27.3 4.9 51 254-307 17-69 (111)
353 2f2e_A PA1607; transcription f 53.4 43 0.0015 26.4 7.2 42 262-303 35-76 (146)
354 3jw4_A Transcriptional regulat 53.4 16 0.00054 28.4 4.6 44 263-306 56-99 (148)
355 1xd7_A YWNA; structural genomi 53.3 18 0.00062 28.6 4.9 34 266-299 25-58 (145)
356 3f6v_A Possible transcriptiona 53.1 55 0.0019 26.0 7.8 57 244-302 53-109 (151)
357 1pc2_A Mitochondria fission pr 52.9 25 0.00087 28.3 5.7 65 52-117 32-99 (152)
358 3d0s_A Transcriptional regulat 52.8 85 0.0029 25.7 9.5 42 264-309 177-218 (227)
359 3e97_A Transcriptional regulat 52.6 72 0.0025 26.3 9.1 43 263-309 174-216 (231)
360 3df8_A Possible HXLR family tr 52.4 51 0.0017 24.5 7.2 56 244-299 22-78 (111)
361 1pc2_A Mitochondria fission pr 52.2 76 0.0026 25.4 8.5 30 51-80 70-99 (152)
362 2jsc_A Transcriptional regulat 52.0 33 0.0011 25.8 6.1 55 244-300 16-70 (118)
363 2ff4_A Probable regulatory pro 51.8 1E+02 0.0034 28.4 10.6 75 49-126 168-244 (388)
364 3k69_A Putative transcription 51.5 32 0.0011 27.8 6.2 37 261-297 25-61 (162)
365 2x4h_A Hypothetical protein SS 51.4 28 0.00097 26.7 5.8 41 256-296 23-63 (139)
366 1z91_A Organic hydroperoxide r 51.3 21 0.00072 27.5 5.0 46 258-303 48-93 (147)
367 3la7_A Global nitrogen regulat 51.2 1.1E+02 0.0037 25.6 11.5 45 263-311 192-236 (243)
368 3iuo_A ATP-dependent DNA helic 51.2 16 0.00054 28.3 4.1 33 263-295 31-64 (122)
369 2vxz_A Pyrsv_GP04; viral prote 51.1 29 0.00099 28.0 5.6 44 251-295 12-55 (165)
370 1z05_A Transcriptional regulat 50.3 26 0.0009 32.9 6.3 46 249-294 38-83 (429)
371 1fse_A GERE; helix-turn-helix 50.2 30 0.001 23.1 5.1 29 262-290 24-52 (74)
372 4a5n_A Uncharacterized HTH-typ 49.9 61 0.0021 25.2 7.4 72 262-333 37-113 (131)
373 3mkq_A Coatomer beta'-subunit; 49.6 52 0.0018 32.7 8.8 17 59-75 659-675 (814)
374 3u2r_A Regulatory protein MARR 49.5 43 0.0015 26.5 6.8 43 263-305 61-103 (168)
375 1b89_A Protein (clathrin heavy 49.2 18 0.0006 34.7 4.9 52 54-116 124-175 (449)
376 2k9l_A RNA polymerase sigma fa 49.2 16 0.00055 25.6 3.5 26 262-287 46-71 (76)
377 3o48_A Mitochondria fission 1 48.9 41 0.0014 26.5 6.1 29 52-80 78-106 (134)
378 3i71_A Ethanolamine utilizatio 48.7 32 0.0011 22.9 4.5 35 262-296 16-50 (68)
379 3e4b_A ALGK; tetratricopeptide 48.4 78 0.0027 29.5 9.4 91 54-156 178-278 (452)
380 1bia_A BIRA bifunctional prote 48.1 25 0.00087 31.8 5.6 45 251-295 6-50 (321)
381 2p7v_B Sigma-70, RNA polymeras 48.1 33 0.0011 22.9 5.0 29 262-290 23-51 (68)
382 2da7_A Zinc finger homeobox pr 47.6 26 0.00087 24.5 4.2 37 254-290 19-58 (71)
383 1z6r_A MLC protein; transcript 47.6 24 0.00082 32.8 5.5 46 250-295 16-61 (406)
384 3iwz_A CAP-like, catabolite ac 47.5 99 0.0034 25.3 9.1 42 264-309 187-228 (230)
385 3c57_A Two component transcrip 47.3 32 0.0011 24.9 5.1 37 253-291 33-69 (95)
386 2lkp_A Transcriptional regulat 47.1 84 0.0029 23.2 7.9 35 263-297 44-78 (119)
387 2hvu_A PDCD5-like protein; YMR 47.0 2.9 0.0001 32.3 -0.8 46 254-299 45-90 (116)
388 3e6c_C CPRK, cyclic nucleotide 46.8 1.1E+02 0.0036 25.7 9.3 42 263-308 176-217 (250)
389 2k9s_A Arabinose operon regula 46.8 26 0.00089 25.7 4.6 34 255-288 8-44 (107)
390 2fxa_A Protease production reg 46.7 38 0.0013 28.3 6.2 43 262-304 60-102 (207)
391 2kfs_A Conserved hypothetical 46.5 25 0.00086 28.3 4.6 39 263-308 30-69 (148)
392 2nsz_A Programmed cell death p 46.3 99 0.0034 23.8 10.1 49 51-103 6-54 (129)
393 3fm5_A Transcriptional regulat 45.9 41 0.0014 25.9 6.0 42 263-304 53-94 (150)
394 3mn2_A Probable ARAC family tr 45.9 30 0.001 25.4 4.8 26 262-287 16-41 (108)
395 2rpa_A Katanin P60 ATPase-cont 45.8 22 0.00075 25.3 3.8 26 55-80 15-40 (78)
396 1ku3_A Sigma factor SIGA; heli 45.8 39 0.0013 22.8 5.1 27 263-289 29-55 (73)
397 1je8_A Nitrate/nitrite respons 45.2 39 0.0013 23.7 5.1 30 262-291 34-63 (82)
398 3oou_A LIN2118 protein; protei 45.1 30 0.001 25.4 4.8 27 262-288 19-45 (108)
399 2pjp_A Selenocysteine-specific 44.8 28 0.00097 26.5 4.7 33 264-296 20-52 (121)
400 2jpc_A SSRB; DNA binding prote 44.6 38 0.0013 21.7 4.7 29 262-290 11-39 (61)
401 3k2z_A LEXA repressor; winged 44.2 35 0.0012 28.3 5.5 33 264-296 24-56 (196)
402 3boq_A Transcriptional regulat 44.1 22 0.00076 27.8 4.1 43 262-304 60-102 (160)
403 2hoe_A N-acetylglucosamine kin 43.9 8.9 0.0003 35.6 1.8 42 253-295 23-64 (380)
404 3t5x_A PCI domain-containing p 43.8 97 0.0033 25.9 8.3 57 49-105 11-69 (203)
405 3e4b_A ALGK; tetratricopeptide 43.6 1.3E+02 0.0045 27.9 10.1 56 55-116 216-278 (452)
406 1y8m_A FIS1; mitochondria, unk 43.3 50 0.0017 26.3 5.9 28 52-79 77-104 (144)
407 2o8x_A Probable RNA polymerase 43.3 45 0.0015 21.9 5.1 28 262-289 29-56 (70)
408 2fu4_A Ferric uptake regulatio 43.3 73 0.0025 21.9 6.4 44 253-296 20-70 (83)
409 1x3u_A Transcriptional regulat 43.1 44 0.0015 22.7 5.1 30 262-291 29-58 (79)
410 4fhn_B Nucleoporin NUP120; pro 42.6 2.6E+02 0.0088 29.8 13.3 170 55-233 845-1050(1139)
411 1tty_A Sigma-A, RNA polymerase 42.6 33 0.0011 24.3 4.5 28 263-290 37-64 (87)
412 2w48_A Sorbitol operon regulat 42.3 55 0.0019 29.3 6.9 41 262-302 19-59 (315)
413 2wte_A CSA3; antiviral protein 42.3 74 0.0025 27.5 7.5 45 262-308 164-208 (244)
414 3oio_A Transcriptional regulat 42.3 33 0.0011 25.4 4.6 34 255-288 12-47 (113)
415 2rnj_A Response regulator prot 42.3 37 0.0012 24.2 4.7 30 262-291 42-71 (91)
416 2ion_A PDCD4, programmed cell 42.2 1.3E+02 0.0044 23.9 9.7 50 50-103 7-56 (152)
417 2bgc_A PRFA; bacterial infecti 41.3 1.5E+02 0.0052 24.5 9.9 43 264-310 169-212 (238)
418 2lnb_A Z-DNA-binding protein 1 40.7 92 0.0031 22.1 6.2 45 250-294 20-64 (80)
419 3eqx_A FIC domain containing t 40.2 49 0.0017 30.7 6.3 52 255-307 302-353 (373)
420 2crb_A Nuclear receptor bindin 39.7 35 0.0012 25.1 4.0 30 54-83 17-46 (97)
421 2oz6_A Virulence factor regula 39.6 1.4E+02 0.0049 23.7 9.8 42 264-309 164-205 (207)
422 2jn6_A Protein CGL2762, transp 39.1 57 0.0019 23.3 5.4 41 251-292 11-51 (97)
423 2zkz_A Transcriptional repress 38.7 67 0.0023 23.1 5.8 52 246-299 24-75 (99)
424 2vn2_A DNAD, chromosome replic 38.7 24 0.00083 27.2 3.4 35 265-299 52-86 (128)
425 4fx0_A Probable transcriptiona 38.7 62 0.0021 25.2 6.0 43 263-306 51-93 (148)
426 2gqq_A Leucine-responsive regu 38.5 5.5 0.00019 32.3 -0.5 49 247-296 11-59 (163)
427 3mkl_A HTH-type transcriptiona 38.2 44 0.0015 25.0 4.8 33 255-287 12-46 (120)
428 2qc0_A Uncharacterized protein 37.7 56 0.0019 30.2 6.3 42 255-296 302-343 (373)
429 3ez9_A Para; DNA binding, wing 37.5 46 0.0016 30.8 5.7 61 239-299 13-78 (403)
430 2elh_A CG11849-PA, LD40883P; s 36.2 64 0.0022 22.7 5.2 27 263-289 37-63 (87)
431 1ldd_A APC2WHB, anaphase promo 36.1 97 0.0033 21.7 5.8 36 261-296 19-65 (74)
432 1rr7_A Middle operon regulator 35.8 86 0.0029 24.3 6.2 64 224-290 55-118 (129)
433 4g26_A Pentatricopeptide repea 35.1 1.6E+02 0.0055 28.1 9.4 63 54-118 142-204 (501)
434 1or7_A Sigma-24, RNA polymeras 35.0 58 0.002 26.1 5.5 36 251-289 146-181 (194)
435 2olt_A Hypothetical protein; s 35.0 2E+02 0.0067 24.0 9.0 77 206-289 32-108 (227)
436 1stz_A Heat-inducible transcri 34.8 52 0.0018 30.1 5.5 39 257-295 29-69 (338)
437 3ulq_B Transcriptional regulat 34.8 68 0.0023 22.9 5.1 28 263-290 43-70 (90)
438 2rg8_A Programmed cell death p 34.6 1E+02 0.0034 24.9 6.7 90 47-158 5-94 (165)
439 2pi2_A Replication protein A 3 34.2 8.5 0.00029 34.2 0.0 38 263-300 223-261 (270)
440 3t72_q RNA polymerase sigma fa 33.6 72 0.0025 23.4 5.2 28 263-290 38-65 (99)
441 4aik_A Transcriptional regulat 33.2 1.7E+02 0.0058 22.7 9.5 41 264-304 46-86 (151)
442 3lsg_A Two-component response 32.4 89 0.003 22.4 5.6 25 264-288 19-43 (103)
443 3lpz_A GET4 (YOR164C homolog); 32.3 2.9E+02 0.0099 25.1 10.9 101 52-153 35-160 (336)
444 1zyb_A Transcription regulator 32.1 64 0.0022 26.8 5.4 44 263-310 185-228 (232)
445 2oo2_A Hypothetical protein AF 31.7 80 0.0028 22.8 4.9 25 52-76 35-59 (86)
446 1pdn_C Protein (PRD paired); p 31.3 82 0.0028 23.1 5.4 42 250-294 22-63 (128)
447 2ra5_A Putative transcriptiona 30.8 13 0.00043 32.4 0.6 64 243-308 18-82 (247)
448 1bl0_A Protein (multiple antib 30.8 54 0.0019 24.9 4.3 27 262-288 25-51 (129)
449 2k9m_A RNA polymerase sigma fa 30.3 43 0.0015 26.1 3.6 26 262-287 37-62 (130)
450 1nd9_A Translation initiation 30.2 41 0.0014 20.7 2.9 25 264-288 2-26 (49)
451 3ly7_A Transcriptional activat 30.1 2.4E+02 0.0082 26.1 9.2 23 58-80 283-305 (372)
452 2h09_A Transcriptional regulat 30.0 1.9E+02 0.0065 22.2 9.5 36 262-297 52-87 (155)
453 1zu2_A Mitochondrial import re 29.6 96 0.0033 24.9 5.7 31 52-82 36-76 (158)
454 2rn7_A IS629 ORFA; helix, all 29.5 80 0.0028 23.0 4.9 44 250-293 11-59 (108)
455 1p4w_A RCSB; solution structur 29.2 85 0.0029 23.0 4.9 29 262-290 47-75 (99)
456 3hrs_A Metalloregulator SCAR; 29.0 71 0.0024 26.8 5.1 51 255-308 11-61 (214)
457 2hin_A GP39, repressor protein 29.0 67 0.0023 22.2 4.0 22 266-287 12-33 (71)
458 2ao9_A Phage protein; structur 28.9 78 0.0027 25.5 4.9 43 244-286 26-70 (155)
459 1xsv_A Hypothetical UPF0122 pr 28.9 75 0.0026 23.8 4.7 28 262-289 39-66 (113)
460 3cuq_B Vacuolar protein-sortin 28.9 1.7E+02 0.0057 24.9 7.4 41 263-304 167-207 (218)
461 2glo_A Brinker CG9653-PA; prot 28.3 96 0.0033 19.9 4.6 21 267-287 28-48 (59)
462 1mkm_A ICLR transcriptional re 28.2 87 0.003 26.8 5.6 43 255-297 13-56 (249)
463 3mzy_A RNA polymerase sigma-H 28.0 91 0.0031 23.9 5.3 28 262-289 122-149 (164)
464 1nxh_A MTH396 protein; hypothe 27.7 21 0.00073 27.6 1.3 41 245-287 5-45 (126)
465 3dn7_A Cyclic nucleotide bindi 27.6 37 0.0013 27.3 2.9 29 262-290 166-194 (194)
466 3pvv_A Chromosomal replication 27.4 1.5E+02 0.0051 21.9 6.0 46 206-252 52-97 (101)
467 2yin_A DOCK2, dedicator of cyt 26.9 3.7E+02 0.013 25.2 10.2 33 46-78 28-61 (436)
468 4e6h_A MRNA 3'-END-processing 26.8 1.7E+02 0.0058 29.3 8.1 60 55-117 472-532 (679)
469 3cta_A Riboflavin kinase; stru 26.7 2.1E+02 0.0071 23.9 7.8 48 261-308 24-71 (230)
470 1k78_A Paired box protein PAX5 26.7 1E+02 0.0035 23.7 5.4 43 249-294 36-78 (149)
471 2p4w_A Transcriptional regulat 26.6 2.7E+02 0.0093 23.0 9.0 54 245-300 11-64 (202)
472 2zcw_A TTHA1359, transcription 26.6 58 0.002 26.3 4.0 42 264-309 146-187 (202)
473 2pmr_A Uncharacterized protein 26.4 93 0.0032 22.5 4.5 26 52-77 39-64 (87)
474 2xzm_8 RPS25E,; ribosome, tran 25.7 1.3E+02 0.0045 23.8 5.5 51 260-310 58-109 (143)
475 1ucr_A Protein DSVD; dissimila 25.1 81 0.0028 22.3 3.8 35 261-295 18-53 (78)
476 2ijq_A Hypothetical protein; s 24.5 2.8E+02 0.0095 22.3 8.7 66 56-121 36-107 (161)
477 3b02_A Transcriptional regulat 24.4 48 0.0016 26.7 3.1 42 264-309 139-180 (195)
478 1ug3_A EIF4GI, eukaryotic prot 23.9 3.2E+02 0.011 24.5 8.8 91 47-158 6-96 (339)
479 1b4a_A Arginine repressor; hel 23.6 92 0.0032 24.8 4.5 39 250-288 5-48 (149)
480 1s7o_A Hypothetical UPF0122 pr 23.6 1.1E+02 0.0036 23.0 4.6 28 262-289 36-63 (113)
481 2xrn_A HTH-type transcriptiona 23.5 1.1E+02 0.0036 26.2 5.2 51 255-307 11-62 (241)
482 1uxc_A FRUR (1-57), fructose r 23.3 61 0.0021 21.8 2.8 21 265-285 1-21 (65)
483 2x48_A CAG38821; archeal virus 23.1 63 0.0022 20.2 2.8 24 263-286 30-53 (55)
484 3u5c_Z RP45, S31, YS23, 40S ri 23.0 1.3E+02 0.0045 22.7 4.9 50 260-309 55-104 (108)
485 1j9i_A GPNU1 DBD;, terminase s 22.9 48 0.0017 22.2 2.3 25 265-293 3-27 (68)
486 2pjp_A Selenocysteine-specific 22.8 1.6E+02 0.0054 22.1 5.6 79 205-287 21-103 (121)
487 3l7w_A Putative uncharacterize 22.8 2.2E+02 0.0077 20.7 6.7 67 268-334 30-98 (108)
488 2jrt_A Uncharacterized protein 22.7 64 0.0022 23.6 3.1 38 254-293 41-78 (95)
489 1bja_A Transcription regulator 22.6 2.3E+02 0.0078 20.7 6.1 41 255-295 21-62 (95)
490 3lmm_A Uncharacterized protein 22.6 93 0.0032 30.7 5.2 42 250-291 430-471 (583)
491 1o5l_A Transcriptional regulat 22.6 42 0.0014 27.6 2.3 44 263-310 163-206 (213)
492 3fx3_A Cyclic nucleotide-bindi 22.5 75 0.0026 26.3 4.0 41 265-310 179-219 (237)
493 1jko_C HIN recombinase, DNA-in 22.5 21 0.00073 21.8 0.3 24 264-287 21-44 (52)
494 4h7y_A Dual specificity protei 22.3 2.1E+02 0.0071 23.1 6.2 59 55-117 64-122 (161)
495 2pft_A Exocytosis protein; hel 22.1 1.4E+02 0.0047 29.2 6.3 55 234-288 511-566 (571)
496 1u8b_A ADA polyprotein; protei 21.8 1.7E+02 0.0057 22.1 5.6 41 247-287 76-116 (133)
497 1e0g_A Membrane-bound lytic mu 21.8 68 0.0023 19.4 2.7 18 266-283 12-29 (48)
498 1zu2_A Mitochondrial import re 21.7 61 0.0021 26.1 3.1 31 52-82 80-121 (158)
499 2fq3_A Transcription regulator 21.7 2.4E+02 0.0081 21.0 6.1 60 241-300 43-103 (104)
500 4fhn_B Nucleoporin NUP120; pro 21.6 1.3E+02 0.0044 32.1 6.4 91 55-156 941-1047(1139)
No 1
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-64 Score=489.58 Aligned_cols=333 Identities=39% Similarity=0.691 Sum_probs=275.9
Q ss_pred ccCCCCcchhHhhhhhhcc--------------------hHHHHhhcc--------c----cchhHHHH-hhCHHHHHHH
Q 019472 8 IMRSPPPPSFGHLCLLLSY--------------------LVVISFVMP--------L----SRIADAEE-NLGESEVREA 54 (340)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~--------~----~~l~~~~~-n~~~~~ir~~ 54 (340)
|...+|+|+|..+|..... +.+..|++. + +.++++++ +.++.+||++
T Consensus 54 ik~~~ma~~y~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~n~~~l~~l~~~~~~~~~~~~~e~e~~~~ 133 (429)
T 4b4t_R 54 IKEEEMAPYYKYLCEEYLVNNGQSDLEHDEKSDSLNEWIKFDQELYNELCKKNESKIKELNEKIQKLEEDDEGELEQAQA 133 (429)
T ss_dssp HHHTCCHHHHHHHHHHSCCCCSCCSSCSHHHHHHHHHTTTTCCSSCTTTTCCSSCCHHHHHHHHHHHHHCCSCCCCCSSC
T ss_pred HHHhCCHHHHHHHHHHHhhcccchhhhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 4567899999999986532 233344432 2 23344443 6677789999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhhHH
Q 019472 55 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVY 134 (340)
Q Consensus 55 ~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~~~ 134 (340)
+.+||+||+++||+++|+++|.+++++|++++++++++|.++|++++.+||.++..+++|++..++++++|++++++++|
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~ 213 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTY 213 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccCCHHHHHHHHHhccccCCcCccCCHhHHHHHHHHHHhhhcChhHHHHhccCChHHHHHhcCcch---HHHHH
Q 019472 135 EGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPY---LSEFL 211 (340)
Q Consensus 135 ~gl~~l~~r~y~~Aa~~F~e~~~~f~~~e~~~~~~~~~Y~~L~al~s~~r~~l~~~ll~~~~~~~~l~~~p~---l~~ll 211 (340)
+|+++++.|+|.+|+++|++++++|++.+.+++.++++|++||++++++|++++.+++++++++.+++..|. +.+++
T Consensus 214 ~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~ 293 (429)
T 4b4t_R 214 YGIHCLAVRNFKEAAKLLVDSLATFTSIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLT 293 (429)
T ss_dssp HHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHHhccCCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHH
Confidence 999999999999999999999999999899999999999999999999999999999999999999988885 56679
Q ss_pred HHHHhccHHHHHHHH-HHhHHHhhcChhHhhhHHHHHHHHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhh
Q 019472 212 NSLYDCQYKSFFSAF-AGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIA 290 (340)
Q Consensus 212 ~af~~~~~~~~~~~L-~~~~~~l~~D~~l~~h~~~l~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~ 290 (340)
.+|++++|..|++.+ ..+...+..|+|+++|++.|+++||.+++.||++||++|+|++||+.||+|++++|++|++||.
T Consensus 294 ~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~ 373 (429)
T 4b4t_R 294 ISLYASDYASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIP 373 (429)
T ss_dssp HHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 999999999998865 4456678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceEEecCCCEEEEcCCCcchHHHHHHHHhhHHHHHHHHHhhhhhcC
Q 019472 291 AGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 340 (340)
Q Consensus 291 ~g~l~akID~~~g~l~~~~~~~r~~~y~~~l~~~~~l~~ri~~l~~~v~~ 340 (340)
+|+|+||||+++|+|++++||+|+++|++++++||.|+||+||+|++||+
T Consensus 374 ~g~l~akID~~~giv~~~~~d~~~~~y~~~i~~gd~Ll~riqkl~~~i~l 423 (429)
T 4b4t_R 374 NKQLNCVIDRVNGIVETNRPDNKNAQYHLLVKQGDGLLTKLQKYGAAVRL 423 (429)
T ss_dssp HTSSCEEEETTTTEEEECC-------------------------------
T ss_pred cCCeEEEEcCCCCEEEECCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999986
No 2
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=100.00 E-value=9.2e-55 Score=417.84 Aligned_cols=318 Identities=15% Similarity=0.176 Sum_probs=269.2
Q ss_pred CCcchhHhhhhhhcchHHHHhhccccchhHH---HHhhCHHHH-----------HHH-HHHHHHHHHHhCCHHHHHHHHH
Q 019472 12 PPPPSFGHLCLLLSYLVVISFVMPLSRIADA---EENLGESEV-----------REA-HLAKSLFYIQIGDKEKALEQLK 76 (340)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~n~~~~~i-----------r~~-~~~La~~~~~~Gd~~~A~~~l~ 76 (340)
..+|||+.++|++++|++|+++|.+..+++. +..+|+++| |.. ..+||++|++.|+|++|++++.
T Consensus 44 ~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~ 123 (394)
T 3txn_A 44 VTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGA 123 (394)
T ss_dssp HTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4699999999999999999999998887754 355555554 222 4499999999999999999999
Q ss_pred HHHhhhcc---chhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcC-CChhhhhHhhHHHHHhcc-ccCCHHHHHHH
Q 019472 77 VTESKTVA---VGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG-GDWERKNRLKVYEGLYCM-STRNFKKAASL 151 (340)
Q Consensus 77 ~~~~~~~~---~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~-~~~~~~~~l~~~~gl~~l-~~r~y~~Aa~~ 151 (340)
+++++|+. ..+.+++++..++++...+|+.+++..+.+|++..++. +||.+++++++++|++++ .+|+|++|+++
T Consensus 124 ~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~ 203 (394)
T 3txn_A 124 QLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSY 203 (394)
T ss_dssp HHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHH
Confidence 99999976 56789999999999999999999999999999988876 899999999999999999 99999999999
Q ss_pred HHhccccCCcCccCCHhHHHHHHHHHHhhhcChhHHHHhccCChHHHHHhcCcc---hHHHHHHHHHhccHHHHHHHHHH
Q 019472 152 FLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIP---YLSEFLNSLYDCQYKSFFSAFAG 228 (340)
Q Consensus 152 F~e~~~~f~~~e~~~~~~~~~Y~~L~al~s~~r~~l~~~ll~~~~~~~~l~~~p---~l~~ll~af~~~~~~~~~~~L~~ 228 (340)
|+++|++|+..+.....++++|++||+|++++|.+++. ++.++.+..| ..| ++++++.+|.++++..|.+.|..
T Consensus 204 F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~-~l~~~~~~~~--~~pei~~l~~L~~a~~~~dl~~f~~iL~~ 280 (394)
T 3txn_A 204 FYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQ-LVSGKLAITY--SGRDIDAMKSVAEASHKRSLADFQAALKE 280 (394)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHH-HHHSHHHHTT--CSHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHH-Hhcccccccc--CCccHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999865555556899999999999999999985 6777766665 344 58899999999999999999999
Q ss_pred hHHHhhcChhHhhhHHHHHHHHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEc
Q 019472 229 LTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 308 (340)
Q Consensus 229 ~~~~l~~D~~l~~h~~~l~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~ 308 (340)
+++.+..|+|+++|++.|+++||.+++.++++||++|+|++||+.||+|++++|++|++||.+|+|+|+||+++|+|++.
T Consensus 281 ~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~~ 360 (394)
T 3txn_A 281 YKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVF 360 (394)
T ss_dssp STTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSCEEEETTTTEEEEC
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHhhHHHHHHHHHhhhhhc
Q 019472 309 RPDAKNALYQATIKQGDFLLNRIQKLSRVID 339 (340)
Q Consensus 309 ~~~~r~~~y~~~l~~~~~l~~ri~~l~~~v~ 339 (340)
++++++.+|+++++. +++++++||
T Consensus 361 ~~~~r~~~y~~ale~-------l~~ls~vVd 384 (394)
T 3txn_A 361 EETPVDKTYERVLET-------IQSMGKVVD 384 (394)
T ss_dssp CC-----------------------------
T ss_pred CCcchhhHHHHHHHH-------HHHHHHHHH
Confidence 999999999999998 777777776
No 3
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-35 Score=288.71 Aligned_cols=314 Identities=13% Similarity=0.116 Sum_probs=231.0
Q ss_pred hhhcchHHHHhhccccchhHH--HHh---------------hCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh--
Q 019472 22 LLLSYLVVISFVMPLSRIADA--EEN---------------LGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKT-- 82 (340)
Q Consensus 22 ~~~~~~~~~~~~~~~~~l~~~--~~n---------------~~~~~ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~-- 82 (340)
|..++++++..++.+...+.. +.. +.+.+..+...+||++|++.|++.+|++++..+...+
T Consensus 90 k~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~ 169 (445)
T 4b4t_P 90 KLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYG 169 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 566677777777655444321 100 0111223337899999999999999999999998655
Q ss_pred -ccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHH-HHhcCCChhhhhHhhHHHHHhccccCCHHHHHHHHHhccccCC
Q 019472 83 -VAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS-LFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFT 160 (340)
Q Consensus 83 -~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~-~l~~~~~~~~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~~f~ 160 (340)
.+...++++++.++|+++..+||..+...+.|++. .....++|+.+++++.++|.+++++++|.+|+++|++++.+++
T Consensus 170 ~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~ 249 (445)
T 4b4t_P 170 SMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDA 249 (445)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 34577899999999999999999999999999986 4556788999999999999999999999999999999998875
Q ss_pred cCccC-CHhHHHHHHHHHHhhh---cChhHHHHhccCChHHHHHhcCcchHHHHHHHHHhccHHHHHHHHHHhHHHhhcC
Q 019472 161 TYELF-PYDTFIFYTVLTSIIS---LDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLD 236 (340)
Q Consensus 161 ~~e~~-~~~~~~~Y~~L~al~s---~~r~~l~~~ll~~~~~~~~l~~~p~l~~ll~af~~~~~~~~~~~L~~~~~~l~~D 236 (340)
..+.. ....++.|+++|.+++ +.|+++..++..++ .++..|.+..++++|.++++..|...+..+.+.+..|
T Consensus 250 ~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~----~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~ 325 (445)
T 4b4t_P 250 IKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDN----NLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNED 325 (445)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHS----SCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTC
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcc----cccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhccc
Confidence 32221 1235677788887776 34555554443322 2345689999999999999999999999998888888
Q ss_pred hhH------hhhHHHHHHHHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEcCC
Q 019472 237 RYL------YPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 310 (340)
Q Consensus 237 ~~l------~~h~~~l~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~~ 310 (340)
+++ ..|...|.+++++.++..+.+||++|++++||+.||+|++++|.++++||.+|+|+|+|||++|+|++.++
T Consensus 326 ~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~~~evE~~ls~mI~~g~i~akIDq~~giV~F~~~ 405 (445)
T 4b4t_P 326 DLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKP 405 (445)
T ss_dssp CSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEEETTTTEEEC---
T ss_pred chhhhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEcCCCCEEEECCC
Confidence 877 78999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CcchHHHHHHHHhhHHHHHHHHHhhhhhc
Q 019472 311 DAKNALYQATIKQGDFLLNRIQKLSRVID 339 (340)
Q Consensus 311 ~~r~~~y~~~l~~~~~l~~ri~~l~~~v~ 339 (340)
.+.+..+.+-....+.+++.+.+++..|.
T Consensus 406 ~~~~~~l~~W~~~i~~l~~~v~k~~~lI~ 434 (445)
T 4b4t_P 406 KNSSQLLNEWSHNVDELLEHIETIGHLIT 434 (445)
T ss_dssp -----------------------------
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666666666677777777776653
No 4
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-32 Score=263.51 Aligned_cols=319 Identities=13% Similarity=0.175 Sum_probs=242.5
Q ss_pred CcchhHhhhhhhcchHHHHhhccccchhHH---HHhhCHHH------------HHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 019472 13 PPPSFGHLCLLLSYLVVISFVMPLSRIADA---EENLGESE------------VREAHLAKSLFYIQIGDKEKALEQLKV 77 (340)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~n~~~~~------------ir~~~~~La~~~~~~Gd~~~A~~~l~~ 77 (340)
..+++..+.++...+.+++.++.+...++. ...+.+.. .......||.+|.+.|+|++|.+.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 81 STEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp THHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 345666777777777888777653332211 01111111 234578999999999999999999999
Q ss_pred HHhhhc---cchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhc-CCChhhhhHhhHHHHHhccccCCHHHHHHHHH
Q 019472 78 TESKTV---AVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE-GGDWERKNRLKVYEGLYCMSTRNFKKAASLFL 153 (340)
Q Consensus 78 ~~~~~~---~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~-~~~~~~~~~l~~~~gl~~l~~r~y~~Aa~~F~ 153 (340)
+...+. ......+.++.+.+++...+||..+...+.++.....+ .+++..++.+..+.|.++.+.++|.+|..+|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~ 240 (434)
T 4b4t_Q 161 LLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFF 240 (434)
T ss_dssp HHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 887663 33557889999999999999999999999999887654 45567899999999999999999999999999
Q ss_pred hccccCCcCcc----CCHhHHHHHHHHHHhhhcChhHHHHhccCChHHHHHh--cCcchHHHHHHHHHhccHHHHHHHHH
Q 019472 154 DSISTFTTYEL----FPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVI--GKIPYLSEFLNSLYDCQYKSFFSAFA 227 (340)
Q Consensus 154 e~~~~f~~~e~----~~~~~~~~Y~~L~al~s~~r~~l~~~ll~~~~~~~~l--~~~p~l~~ll~af~~~~~~~~~~~L~ 227 (340)
+++.++...+. ..+...+.|+++|.++...+.+.. .++.++....+. ...|.+..++.+|.++++..|...+.
T Consensus 241 ~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~ 319 (434)
T 4b4t_Q 241 ESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVK-NILNAKYTKETYQSRGIDAMKAVAEAYNNRSLLDFNTALK 319 (434)
T ss_dssp HHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHCSSSSTTCCCHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHH-hHHHHHHHHHHhcchhhhHHHHHHHHHHhhhHHHHHHHHH
Confidence 99887643222 223467889999999998877665 355555444432 23467899999999999999999999
Q ss_pred HhHHHhhcChhHhhhHHHHHHHHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEE
Q 019472 228 GLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLET 307 (340)
Q Consensus 228 ~~~~~l~~D~~l~~h~~~l~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~ 307 (340)
.+...+..|+++..|...+.+.++.+++.++++||++|++++||+.||++++++|++|++||.+|+|+|+||+++|+|++
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~~~~~E~~l~~lI~~~~i~a~id~~~g~v~~ 399 (434)
T 4b4t_Q 320 QYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYV 399 (434)
T ss_dssp HTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSSCCEEETTTTEEEC
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcCHHHHHHHHHHHHhCCCcceecccccCeEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcchHHHHHHHHhhHHHHHHHHHhhhhhc
Q 019472 308 NRPDAKNALYQATIKQGDFLLNRIQKLSRVID 339 (340)
Q Consensus 308 ~~~~~r~~~y~~~l~~~~~l~~ri~~l~~~v~ 339 (340)
.++++++..|+++++. +++++++||
T Consensus 400 ~~~~~~~~~~~~~l~~-------~~~l~~~vd 424 (434)
T 4b4t_Q 400 YETPNQDATYDSALEL-------VGQLNKVVD 424 (434)
T ss_dssp C-------------------------------
T ss_pred CCCcchhHHHHHHHHH-------HHHHHHHHH
Confidence 9999999999999988 777888776
No 5
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.5e-23 Score=199.79 Aligned_cols=274 Identities=14% Similarity=0.133 Sum_probs=195.9
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhhcc--------------chhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCCh
Q 019472 60 LFYIQIGDKEKALEQLKVTESKTVA--------------VGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDW 125 (340)
Q Consensus 60 ~~~~~~Gd~~~A~~~l~~~~~~~~~--------------~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~ 125 (340)
....+..|.++|++.+.++...... ....+-....+.+.++..+|...++..+++++..++..+++
T Consensus 84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~ 163 (393)
T 4b4t_O 84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI 163 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc
Confidence 3456778999999999988654411 13356666778899999999999999999999999886555
Q ss_pred h--hhhHhhHHHHHhccccCCHHHHHHHHHhccccCCcCccCCHh---HHHHHHHHHHhhhcChhHHHHhccCChHHHHH
Q 019472 126 E--RKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYD---TFIFYTVLTSIISLDRVSLKQKVVDAPEILTV 200 (340)
Q Consensus 126 ~--~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~~f~~~e~~~~~---~~~~Y~~L~al~s~~r~~l~~~ll~~~~~~~~ 200 (340)
+ ..+++..+.|.++...++|..++..++..+.+++..+.++.. ..+..+++|++++..-..+. .++..|.+...
T Consensus 164 ~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~f~-eLL~~p~i~~L 242 (393)
T 4b4t_O 164 PLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNFG-ELLHHPIMETI 242 (393)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCSTH-HHHHSCCTTSS
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcCCCCCChH-HHhCChHHHHh
Confidence 4 567777788889999999999999999988777655555655 33556777888775443333 24555555442
Q ss_pred hc--CcchHHHHHHHHHhccHHHHHHHHHHhHHHhhcChhHhhhHHHHHHHHHHHHHHHhh--hhhccccHHHHHHHhCC
Q 019472 201 IG--KIPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFL--ESYKSVTIEAMAKAFGV 276 (340)
Q Consensus 201 l~--~~p~l~~ll~af~~~~~~~~~~~L~~~~~~l~~D~~l~~h~~~l~~~ir~~~l~q~i--~pYs~I~l~~mA~~~g~ 276 (340)
.. +.+++.+++.+|..+++..|.+.+..+ ....+++..|...+.+++|..++.+.+ .||++|+++.||+.+|+
T Consensus 243 ~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~---~~~~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f~~ia~~l~i 319 (393)
T 4b4t_O 243 VNDSNYDWLFQLLNALTVGDFDKFDSLIKVQ---ISKIPILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDISKATHL 319 (393)
T ss_dssp CSSSSTTHHHHHHHHHHHTCHHHHHHHCCHH---HHHSHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEHHHHHHHHTC
T ss_pred hcCCchHHHHHHHHHHhcCCHHHHHHHHHHh---hhhCcchhhhHHHHHHHHHHHHHHHHhccCCCCcCcHHHHHHHhCc
Confidence 21 235799999999999999998876554 345699999999999999999999987 46899999999999999
Q ss_pred ChHHHHHHHHHHhhCCccceEEecCCCEEEEcCCCcchHHHHHHHHhhHHH---HHHHHHhhhh
Q 019472 277 TVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFL---LNRIQKLSRV 337 (340)
Q Consensus 277 ~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~~~~r~~~y~~~l~~~~~l---~~ri~~l~~~ 337 (340)
|++++|.+++++|.+|.|.|+|||++|+|++.+..||.-.-++.-...+.| .++++++...
T Consensus 320 ~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~~~L~~W~~~v~~l~~~ 383 (393)
T 4b4t_O 320 PKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKDRLVEWNDQVEKLGKK 383 (393)
T ss_dssp CHHHHHHHHHHHHHHSCSSSCEETTTTEECC---------------------------------
T ss_pred CHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888765555443333333 3344444433
No 6
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=99.67 E-value=6.9e-16 Score=135.38 Aligned_cols=173 Identities=12% Similarity=0.179 Sum_probs=139.7
Q ss_pred hhhhHhhHHHHHhccccCCHHHHHHHHHhccccCCcCccCCHhHHHHHHHHHHhhhcChhHHHHhccCChHHHHHhcCcc
Q 019472 126 ERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIP 205 (340)
Q Consensus 126 ~~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~~f~~~e~~~~~~~~~Y~~L~al~s~~r~~l~~~ll~~~~~~~~l~~~p 205 (340)
..+.++.-|.|.+++.+++|.+|.+.|.+++...+......-..+++|++.+.|+...-.... + +.++ +. .
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~~~--l-----l~~~-~~-~ 81 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVE--L-----LKKY-HL-M 81 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEECHH--H-----HHHT-TC-G
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCCHH--H-----hhhC-ch-h
Confidence 456789999999999999999999999999876543222233478999999999985321110 1 1122 11 2
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHhHHHhhcChhHhhhHHHHHHHHHHHHHHHhhh------hhccccHHHHHHHhC----
Q 019472 206 YLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLE------SYKSVTIEAMAKAFG---- 275 (340)
Q Consensus 206 ~l~~ll~af~~~~~~~~~~~L~~~~~~l~~D~~l~~h~~~l~~~ir~~~l~q~i~------pYs~I~l~~mA~~~g---- 275 (340)
.+.+++.|+..+|+..|.+.|+.++. .|+..++-.+++.+|..++...++ ||++|+++.++.+++
T Consensus 82 ~y~~L~~Avr~Gdl~~f~~~l~~~~~-----~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~ 156 (203)
T 3t5x_A 82 QFAEVTRAVSEGNLLLLHEALAKHEA-----FFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQV 156 (203)
T ss_dssp GGHHHHHHHHHTCHHHHHHHHHHTHH-----HHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhHH-----HHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCC
Confidence 47799999999999999999998764 667777777788888888888877 799999999999995
Q ss_pred --CChHHHHHHHHHHhhCCccceEEecCCCEEEEcCCCc
Q 019472 276 --VTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDA 312 (340)
Q Consensus 276 --~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~~~~ 312 (340)
++.+++|..+++||.+|.|+|.||+.+|+++..+.+|
T Consensus 157 ~~~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~~p 195 (203)
T 3t5x_A 157 EDVDIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQNP 195 (203)
T ss_dssp TTCCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECSSCS
T ss_pred CCCCHHHHHHHHHHHHHcCceEEEEcccccEEEECCCCC
Confidence 4899999999999999999999999999999887664
No 7
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.6e-15 Score=148.64 Aligned_cols=215 Identities=13% Similarity=0.086 Sum_probs=169.0
Q ss_pred HHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhhHHHHHhccccCCHHHHHHHHHhccccCCcCccC--C
Q 019472 89 MDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELF--P 166 (340)
Q Consensus 89 i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~~f~~~e~~--~ 166 (340)
....-.++|.++..+.+..+...++|+. ..+........+++..|.|..++.+++|.+|..+|..++......... .
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~-fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gf 309 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE-YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGF 309 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC-SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc-CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhH
Confidence 3455577899999999999999999986 333333445679999999999999999999999999987543221211 1
Q ss_pred HhHHHHHHHHHHhhhcChhHHHHhccCChHHHHHhcCcchHHHHHHHHHhccHHHHHHHHHHhHHHhhcChhHhhhHHHH
Q 019472 167 YDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLYPHFRYY 246 (340)
Q Consensus 167 ~~~~~~Y~~L~al~s~~r~~l~~~ll~~~~~~~~l~~~p~l~~ll~af~~~~~~~~~~~L~~~~~~l~~D~~l~~h~~~l 246 (340)
-..+.+|+++|.|+..+-.+. .++..+..++. ..++.++..+|-.+|...|...++.++..+..|- ....+..+
T Consensus 310 r~~a~K~lI~V~LLlG~iP~r--~lf~q~~l~~~---L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dg-ty~LI~rL 383 (523)
T 4b4t_S 310 LQQSNKLHCCIQLLMGDIPEL--SFFHQSNMQKS---LLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDD-TYQLCVRL 383 (523)
T ss_dssp HHHHHHHHHHHHHHHTCCCCH--HHHTTTSCHHH---HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTT-CTHHHHHH
T ss_pred HHHHHHHHHhHHhhcCCCCCh--HHhhchhHHHH---HHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCC-hhHHHHHH
Confidence 236778999999987432211 12333332221 2336689999999999999999999999988885 34577788
Q ss_pred HHHHHHHHHHHhhhhhccccHHHHHHHhCCC-hHHHHHHHHHHhhCCccceEEecCCCEEEEcCC
Q 019472 247 MREVRTVVYSQFLESYKSVTIEAMAKAFGVT-VEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 310 (340)
Q Consensus 247 ~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~-~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~~ 310 (340)
.+++....+.+...+|++|+++.+|..+|++ ++++|..+++||.+|.|+|.||+.+|+|++.+.
T Consensus 384 r~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~A~Idh~~g~v~ske~ 448 (523)
T 4b4t_S 384 RSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAKINHEDGFIETTEL 448 (523)
T ss_dssp HHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSCCEECTTTCCEECCSS
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCCceEEEecCCCEEEeCcc
Confidence 8888888889998999999999999999994 788999999999999999999999999998653
No 8
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=99.63 E-value=1.9e-16 Score=118.77 Aligned_cols=73 Identities=16% Similarity=0.225 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEcCCCcc
Q 019472 241 PHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAK 313 (340)
Q Consensus 241 ~h~~~l~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~~~~r 313 (340)
.|...|.+.+.+.++..+.+||++|+|++||+.||+|++++|++|++||.+|+|+|+|||++|+|++.++++.
T Consensus 7 ~~~~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e~~ 79 (84)
T 1ufm_A 7 GGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREAS 79 (84)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSCC
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCcccC
Confidence 3556667778888888899999999999999999999999999999999999999999999999999887653
No 9
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1.1e-11 Score=120.77 Aligned_cols=235 Identities=11% Similarity=0.059 Sum_probs=165.0
Q ss_pred CHHHHHHHHHHHHhhhccc----------hhHHH---hHHHHHHHHHHhcCHHHHHhHHHHHHHH-----HhcCCChhhh
Q 019472 67 DKEKALEQLKVTESKTVAV----------GQKMD---LVFYTLQLGFFYMDFDLISKSIDKAKSL-----FEEGGDWERK 128 (340)
Q Consensus 67 d~~~A~~~l~~~~~~~~~~----------~~~i~---~~l~~i~~~i~~~~~~~~~~~i~ka~~~-----l~~~~~~~~~ 128 (340)
..++|...+.++-..|.+. +++.- +.-.++++++..++...+.+.+...+.. ++ .-+...+
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~-~~p~~q~ 219 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFN-EYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGG-GSCHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChh-hCCccce
Confidence 4677777887777666321 13322 2335568888888887777666544442 11 1122457
Q ss_pred hHhhHHHHHhccccCCHHHHHHHHHhcccc-CCcCc-----cCCHhHHHHHHHHHHhhhcChhHHHHhccCC---hHHHH
Q 019472 129 NRLKVYEGLYCMSTRNFKKAASLFLDSIST-FTTYE-----LFPYDTFIFYTVLTSIISLDRVSLKQKVVDA---PEILT 199 (340)
Q Consensus 129 ~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~~-f~~~e-----~~~~~~~~~Y~~L~al~s~~r~~l~~~ll~~---~~~~~ 199 (340)
.++.-|.|.+++.+++|.+|.++|.+++.. ..... ...-..+++|++.+.|+.....+. .++.. +.+
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~--~ll~k~~~~~L-- 295 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKW--GPLRPFLSQET-- 295 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCH--HHHGGGSCHHH--
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCCCH--HHHcccchHHH--
Confidence 899999999999999999999999999865 32110 112247899999999998532111 11211 221
Q ss_pred HhcCcchHHHHHHHHHhccHHHHHHHHHHhHHHhhcChhH---hhhHH-HHHHHHHHHHHHHhhhhh--ccccHHHHHHH
Q 019472 200 VIGKIPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYL---YPHFR-YYMREVRTVVYSQFLESY--KSVTIEAMAKA 273 (340)
Q Consensus 200 ~l~~~p~l~~ll~af~~~~~~~~~~~L~~~~~~l~~D~~l---~~h~~-~l~~~ir~~~l~q~i~pY--s~I~l~~mA~~ 273 (340)
.|-+.+++.|+..+|+..|.+.|+.++..+..|-.+ -.+.+ ..++++..+++..++.|| ++|+++.++.+
T Consensus 296 ----~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~a 371 (455)
T 3t5v_B 296 ----IDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERV 371 (455)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHH
T ss_pred ----HHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHH
Confidence 122567999999999999999999998765554331 12222 224455555555677788 89999999999
Q ss_pred hC---------------------CChHHHHHHHHHHhhCCccceEEecCCCEEEEcCC
Q 019472 274 FG---------------------VTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 310 (340)
Q Consensus 274 ~g---------------------~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~~ 310 (340)
++ ++.+++|-.++++|.+|.|+|.||+.+|+++..+.
T Consensus 372 L~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~ 429 (455)
T 3t5v_B 372 LQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKT 429 (455)
T ss_dssp HHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCC
T ss_pred HhhccCccccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCC
Confidence 97 58899999999999999999999999999999877
No 10
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=99.11 E-value=5e-10 Score=94.79 Aligned_cols=134 Identities=10% Similarity=0.138 Sum_probs=108.6
Q ss_pred HHHHHHHHHHhhhcChhHHHHhccCChHHHHHhcC--cchHHHHHHHHHhccHHHHHHHHHHhHHHhhcChhHhhhHHHH
Q 019472 169 TFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGK--IPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLYPHFRYY 246 (340)
Q Consensus 169 ~~~~Y~~L~al~s~~r~~l~~~ll~~~~~~~~l~~--~p~l~~ll~af~~~~~~~~~~~L~~~~~~l~~D~~l~~h~~~l 246 (340)
..+.-+++.|+.+.+-..+.+ ++..|.+.. ++. .+++.++++.|..+++.+|...- +. -|-|. ..+
T Consensus 24 ~~a~~li~~Al~~p~vf~F~e-LL~~p~v~~-L~~~~~~~~~~LL~iF~~G~~~~y~~~~----~~---~p~L~---~~~ 91 (169)
T 3chm_A 24 EALGPLIIEATSHPSLFAFSE-ILALPNVAQ-LEGTTDSVYLDLLRLFAHGTWGDYKCNA----TR---LPHLS---PDQ 91 (169)
T ss_dssp GGHHHHHHHHHHCTTCCCCHH-HHTCHHHHT-TTTSTTHHHHHHHHHHHHCCHHHHHHHG----GG---SCCCC---HHH
T ss_pred HHHHHHHHHHhcCCCeeehHH-HhCChHHHH-hcCCChhHHHHHHHHHhcCCHHHHHHhH----Hh---CcchH---HHH
Confidence 445566777887766655554 667777655 443 34799999999999999987631 11 12333 788
Q ss_pred HHHHHHHHHHHhhhhhccccHHHHHHHhCCC-hHHHHHHHH-HHhhCCccceEEecCCCEEEEcCCCcch
Q 019472 247 MREVRTVVYSQFLESYKSVTIEAMAKAFGVT-VEFIDVELS-RFIAAGKLHCKIDKVAGVLETNRPDAKN 314 (340)
Q Consensus 247 ~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~-~~~vE~~L~-~lI~~g~l~akID~~~g~l~~~~~~~r~ 314 (340)
.+++|...+...+.-.+.++++.|++.++++ ++++|++++ +.|..|-|.|||||+++++++.+..+|.
T Consensus 92 ~~KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~~~R~ 161 (169)
T 3chm_A 92 ILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRD 161 (169)
T ss_dssp HHHHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEeecCCc
Confidence 8999999999999889999999999999999 999999999 9999999999999999999999887774
No 11
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=98.18 E-value=4.3e-05 Score=67.71 Aligned_cols=196 Identities=11% Similarity=0.042 Sum_probs=115.4
Q ss_pred HHHHHhcCHHHHHhHHHHHHHHHhcC--CCh-----h--hhhHhhHHHHHhccccCCHHHHHHHHHhccccCCcC--ccC
Q 019472 97 QLGFFYMDFDLISKSIDKAKSLFEEG--GDW-----E--RKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTY--ELF 165 (340)
Q Consensus 97 ~~~i~~~~~~~~~~~i~ka~~~l~~~--~~~-----~--~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~~f~~~--e~~ 165 (340)
+-.+..+|++.+.+.+.+++..+... .+| + ..-.+....++..+..+|...--+++-...+-|... ...
T Consensus 15 ~~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~~s~ 94 (229)
T 4b0z_A 15 ADLYDRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLVPSS 94 (229)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCCCCT
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCCCCc
Confidence 33444555555555555555433321 111 1 112344555666666666544333332221111111 111
Q ss_pred CHhHHHHHHHHHHhhhcChhHHHHhc--cCChHHHHHhcCcch---HHHHHHHHHhccHHHHHHHHHHhHHHhhcChhHh
Q 019472 166 PYDTFIFYTVLTSIISLDRVSLKQKV--VDAPEILTVIGKIPY---LSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLY 240 (340)
Q Consensus 166 ~~~~~~~Y~~L~al~s~~r~~l~~~l--l~~~~~~~~l~~~p~---l~~ll~af~~~~~~~~~~~L~~~~~~l~~D~~l~ 240 (340)
....+..|-+|.-+.+++..++..-+ +...+. +...|. ..++-.++..++|..|++...... .+...
T Consensus 95 ~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~---~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p-----~~~~~ 166 (229)
T 4b0z_A 95 RMGLVTGLNLLYLLSENRIAEFHTALESVPDKSL---FERDPYVEWVISLEQNVMEGAFDKVASMIRSCN-----FPEFS 166 (229)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTH---HHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCC-----CGGGH
T ss_pred cHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHH---hhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCc-----cchHH
Confidence 23467777778778777777764311 111111 123443 346677889999999999876541 22334
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhccccHHHHHHHhCC-ChHHHHHHHHHHhhCCccceEEecCCCEEEEc
Q 019472 241 PHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGV-TVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 308 (340)
Q Consensus 241 ~h~~~l~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~-~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~ 308 (340)
...+.+.+.+|..++.....+|++|+++.+++.||+ ++++++..+.+- +=.|+ +|.|++.
T Consensus 167 ~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~~------gw~i~--dg~i~F~ 227 (229)
T 4b0z_A 167 YFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEER------GWDIR--DGVIYFP 227 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHHH------TCEEE--TTEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHc------CCEEe--CCEEecC
Confidence 557889999999999999999999999999999999 567777777662 12444 6666654
No 12
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.97 E-value=0.001 Score=60.10 Aligned_cols=183 Identities=10% Similarity=0.118 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccch---hHHHhHHHHHHHHHHh-cCHHHHHhHHHHHHHHHhcCCChhh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVG---QKMDLVFYTLQLGFFY-MDFDLISKSIDKAKSLFEEGGDWER 127 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~---~~i~~~l~~i~~~i~~-~~~~~~~~~i~ka~~~l~~~~~~~~ 127 (340)
..++..+|..|.+.|++++|.++|.+..+.....+ .....+.++-.++... |++..+..++.+|-......+++..
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 45688999999999999999999999887654322 2344555666777775 9999999999999887654444433
Q ss_pred hhHhhHHHHHhccccCCHHHHHHHHHhccccCCcCccC--CHhHHHHHHHHHHhhhcChhHHHHhccCChHHHHHhcCcc
Q 019472 128 KNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELF--PYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIP 205 (340)
Q Consensus 128 ~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~~f~~~e~~--~~~~~~~Y~~L~al~s~~r~~l~~~ll~~~~~~~~l~~~p 205 (340)
.+....--|..+...++|.+|...|-.+.......... +..+....+++|-....+-.+-.. .+...++-.|
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~------~~~~al~l~p 230 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR------TLQEGQSEDP 230 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH------HHHGGGCC--
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH------HHHHHHhhCC
Confidence 34444555778889999999999998876543211111 111222223344333322221111 1222222222
Q ss_pred ---------hHHHHHHHHHhccHHHHHHHHHHhHHHhhcChhHh
Q 019472 206 ---------YLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLY 240 (340)
Q Consensus 206 ---------~l~~ll~af~~~~~~~~~~~L~~~~~~l~~D~~l~ 240 (340)
.+..+..++...+...+.+.+..+...+..||...
T Consensus 231 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 231 NFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp -------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 25567777777788888888888877777777553
No 13
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.68 E-value=0.0011 Score=52.23 Aligned_cols=104 Identities=15% Similarity=0.029 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHH-hcCCChhhhh
Q 019472 51 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLF-EEGGDWERKN 129 (340)
Q Consensus 51 ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l-~~~~~~~~~~ 129 (340)
.-.++..||..|++.|+|++|++.|.+..+...+ ....+.++-.+.+..|++..+.....++-.+- +...++...+
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~---~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS---NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 3456778999999999999999999998876532 24566777788889999999999999987753 3334455566
Q ss_pred HhhHHHHHhccccCCHHHHHHHHHhccc
Q 019472 130 RLKVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 130 ~l~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
+.....|..+...++|.+|...|-.++.
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6777778889999999999999877654
No 14
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.62 E-value=0.0016 Score=51.35 Aligned_cols=107 Identities=12% Similarity=-0.031 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc---chhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhh
Q 019472 51 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVA---VGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWER 127 (340)
Q Consensus 51 ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~---~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~ 127 (340)
...++..+|..|...|++++|.+.+.+..+.... +......+..+..+....|++..+..++.++.......+++..
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 4556889999999999999999999998876532 2233456667778888899999999999999988776667666
Q ss_pred hhHhhHHHHHhccccCCHHHHHHHHHhccc
Q 019472 128 KNRLKVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 128 ~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
.......-|..+...++|.+|..+|-.+..
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 677777788889999999999999887653
No 15
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.58 E-value=0.0025 Score=50.13 Aligned_cols=107 Identities=17% Similarity=0.006 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc---chhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhh
Q 019472 51 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVA---VGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWER 127 (340)
Q Consensus 51 ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~---~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~ 127 (340)
...+...+|..|...|++++|.+.+.+..+.... +......+..+..+....|++..+...+.++-......+++..
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 127 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG 127 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHh
Confidence 3456889999999999999999999998865532 2334556677778888999999999999999887766666666
Q ss_pred hhHhhHHHHHhccccCCHHHHHHHHHhccc
Q 019472 128 KNRLKVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 128 ~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
.......-|..+...++|.+|..+|-++..
T Consensus 128 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 128 EGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666777778888999999999998877653
No 16
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=97.41 E-value=0.0005 Score=48.71 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=54.1
Q ss_pred HHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEcCCC
Q 019472 253 VVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRPD 311 (340)
Q Consensus 253 ~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~~~ 311 (340)
+.+.+||+..+.+.|+.+|..||++.+++-+.|-.|..+|+|.|.||-.-+.|++.+..
T Consensus 10 ~~Fi~yIk~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~eE 68 (72)
T 1wi9_A 10 TEFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPSG 68 (72)
T ss_dssp HHHHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCSS
T ss_pred HHHHHHHHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecHHH
Confidence 44789999999999999999999999999999999999999999999998888887543
No 17
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.37 E-value=0.0037 Score=51.83 Aligned_cols=107 Identities=9% Similarity=0.010 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccch----hHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChh
Q 019472 51 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVG----QKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWE 126 (340)
Q Consensus 51 ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~----~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~ 126 (340)
...++..+|..|...|++++|.+.+.+..+.+...+ ........+..+....|++..+...+.++-......+++.
T Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 144 (203)
T 3gw4_A 65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV 144 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchH
Confidence 344566777777777777777777777665542211 2344455566666677777777777777766655555555
Q ss_pred hhhHhhHHHHHhccccCCHHHHHHHHHhccc
Q 019472 127 RKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 127 ~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
........-|..+...++|.+|..+|-++..
T Consensus 145 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 145 AIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5555555666667777777777777766643
No 18
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.36 E-value=0.0072 Score=54.78 Aligned_cols=107 Identities=12% Similarity=0.067 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc---hhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhh
Q 019472 51 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV---GQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWER 127 (340)
Q Consensus 51 ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~---~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~ 127 (340)
...++..+|..|.+.|++++|.++|.+..+..... ......+.++-.++.. |++..+..++.+|-......+++..
T Consensus 75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~ 153 (307)
T 2ifu_A 75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQ 153 (307)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhH
Confidence 35568899999999999999999999988654322 2234555555566655 9999999999999887765555554
Q ss_pred hhHhhHHHHHhccccCCHHHHHHHHHhcccc
Q 019472 128 KNRLKVYEGLYCMSTRNFKKAASLFLDSIST 158 (340)
Q Consensus 128 ~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~~ 158 (340)
.+....--|..+...++|.+|..+|-.+...
T Consensus 154 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 154 AAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555555677888999999999999887643
No 19
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.33 E-value=0.058 Score=46.94 Aligned_cols=105 Identities=13% Similarity=0.191 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
....+.+|..+++.|++++|.+.|.++.+.........+..+.+..+....|++..+...+.++-..--. ++ .....
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~--~~-~~~~a 91 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI--DP-RVPQA 91 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CT-THHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC--Cc-hhHHH
Confidence 4567889999999999999999999998876555455678888889999999999999998887664211 11 12233
Q ss_pred hHHHHHhccc--------cCCHHHHHHHHHhccccC
Q 019472 132 KVYEGLYCMS--------TRNFKKAASLFLDSISTF 159 (340)
Q Consensus 132 ~~~~gl~~l~--------~r~y~~Aa~~F~e~~~~f 159 (340)
....|..+.. .++|.+|...|-.+...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 4455666666 899999999888876554
No 20
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.23 E-value=0.0048 Score=51.15 Aligned_cols=107 Identities=7% Similarity=0.013 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc---chhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCC-Chh
Q 019472 51 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVA---VGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGG-DWE 126 (340)
Q Consensus 51 ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~---~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~-~~~ 126 (340)
...++..+|..|...|++++|.+.+.+..+.+.. +......+..+-.+....|++..+..++.++-......+ ++.
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 3556788999999999999999999998876542 233455666777888899999999999999999877655 454
Q ss_pred hhhHhhHHHHHhccccCCHHHHHHHHHhccc
Q 019472 127 RKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 127 ~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
........-|..+...++|.+|..+|-++..
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5666677778888999999999999988754
No 21
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.18 E-value=0.0069 Score=46.39 Aligned_cols=103 Identities=8% Similarity=0.012 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhhH
Q 019472 54 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 133 (340)
Q Consensus 54 ~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~~ 133 (340)
+.+.+|..+++.|++++|.+.+.++.+...+.....+..+.+..+....|++..+...+.++-..- ++.........
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~ 80 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY---PTHDKAAGGLL 80 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTSTTHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC---CCCcccHHHHH
Confidence 367889999999999999999999887665444444677778888899999999999888876532 12111233445
Q ss_pred HHHHhccccCCHHHHHHHHHhccccC
Q 019472 134 YEGLYCMSTRNFKKAASLFLDSISTF 159 (340)
Q Consensus 134 ~~gl~~l~~r~y~~Aa~~F~e~~~~f 159 (340)
.-|..+...++|.+|...|-.+...+
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 66788889999999999988776544
No 22
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.17 E-value=0.031 Score=50.51 Aligned_cols=104 Identities=16% Similarity=0.087 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc---hhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV---GQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERK 128 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~---~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~ 128 (340)
..++..+|..|.. |++++|.++|.+..+..... ......+.++..+....|++..+...+.++-......+++...
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC 194 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence 4568899999999 99999999999988766433 2335667777888899999999999999998865443333334
Q ss_pred hHhhHHHHHhccccCCHHHHHHHHHhcc
Q 019472 129 NRLKVYEGLYCMSTRNFKKAASLFLDSI 156 (340)
Q Consensus 129 ~~l~~~~gl~~l~~r~y~~Aa~~F~e~~ 156 (340)
.......|..++..++|..|..+|-.+.
T Consensus 195 ~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 195 YKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4455667778888899999999988876
No 23
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.14 E-value=0.0076 Score=47.21 Aligned_cols=100 Identities=16% Similarity=0.141 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhh
Q 019472 49 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERK 128 (340)
Q Consensus 49 ~~ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~ 128 (340)
.+.-.++..+|..|++.|+|++|.+.|.+..+.... ..+.+.++-.+....|++..+...+.++-.. +|. .
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~-~ 80 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE---NAILYSNRAACLTKLMEFQRALDDCDTCIRL-----DSK-F 80 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT-C
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-----hhh-h
Confidence 344566778999999999999999999998865532 2456677778888899999999999987664 121 1
Q ss_pred hHhhHHHHHhccccCCHHHHHHHHHhccc
Q 019472 129 NRLKVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 129 ~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
......-|..+...++|.+|...|-.++.
T Consensus 81 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 81 IKGYIRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22345667888899999999999987754
No 24
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.14 E-value=0.012 Score=44.48 Aligned_cols=103 Identities=14% Similarity=0.098 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhc-CCChhhhhH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE-GGDWERKNR 130 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~-~~~~~~~~~ 130 (340)
-.+...+|..++..|++++|.+.+.+..+.... ....+..+..+....|++..+...+.++-..-.. ..++.....
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT---NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 345788999999999999999999998865532 2356667778888899999999999998775432 233333355
Q ss_pred hhHHHHHhccccCCHHHHHHHHHhccc
Q 019472 131 LKVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 131 l~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
....-|..+...++|..|...|-.+..
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 566677888899999999999887754
No 25
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.93 E-value=0.013 Score=50.76 Aligned_cols=109 Identities=9% Similarity=-0.049 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh-----ccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcC--
Q 019472 50 EVREAHLAKSLFYIQIGDKEKALEQLKVTESKT-----VAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG-- 122 (340)
Q Consensus 50 ~ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~-----~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~-- 122 (340)
....++..+|..|...|++++|.+.+.++.+.. .........+..+..+....|++..+...+.++-......
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 120 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 120 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence 356678899999999999999999999988765 2234556777788888899999999999999998875442
Q ss_pred CChhhhhHhhHHHHHhccccCCHHHHHHHHHhcccc
Q 019472 123 GDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 158 (340)
Q Consensus 123 ~~~~~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~~ 158 (340)
.+..........-|..+...++|.+|..+|-.++..
T Consensus 121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 221223445556677888899999999998887543
No 26
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.91 E-value=0.014 Score=47.04 Aligned_cols=100 Identities=9% Similarity=-0.035 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc---------------chhHHHhHHHHHHHHHHhcCHHHHHhHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVA---------------VGQKMDLVFYTLQLGFFYMDFDLISKSIDKAK 116 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~---------------~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~ 116 (340)
......+|..+++.|+|++|++.|.+..+.+.. .......+.++..+++..|+|..+.....++-
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345778999999999999999999998876421 22345677888888999999999999998876
Q ss_pred HHHhcCCChhhhhHhhHHHHHhccccCCHHHHHHHHHhccc
Q 019472 117 SLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 117 ~~l~~~~~~~~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
.. +|. ........|..+...++|.+|...|-.+..
T Consensus 91 ~~-----~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 91 KR-----EET-NEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HH-----STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hc-----CCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 64 222 123445667888899999999999887753
No 27
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.90 E-value=0.08 Score=48.38 Aligned_cols=106 Identities=10% Similarity=-0.026 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc-hhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV-GQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~-~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
.+...+|..++..|++++|.+.+.++.+..... ......+..+..+....|++..+...+.++-......+++......
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 346788999999999999999999988765332 3345677777888889999999999999998877666666666677
Q ss_pred hHHHHHhccccCCHHHHHHHHHhcccc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSIST 158 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~~~ 158 (340)
....|..+...++|.+|...|-.+...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~ 116 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDI 116 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777888889999999999998877543
No 28
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.87 E-value=0.022 Score=52.79 Aligned_cols=129 Identities=10% Similarity=-0.066 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc---chhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChh
Q 019472 50 EVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVA---VGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWE 126 (340)
Q Consensus 50 ~ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~---~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~ 126 (340)
.+..++..+|..|...|++++|.+.+.+..+.+.. +......+.++-.++...|++..+..++.++-.......+|.
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 259 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence 34556889999999999999999999998876532 223445666777888889999999999999988776555666
Q ss_pred hhhHhhHHHHHhccccCCHHHHHHHHHhccccCCcCccCCHhHHHHHHHHHHhhh
Q 019472 127 RKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIIS 181 (340)
Q Consensus 127 ~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~~f~~~e~~~~~~~~~Y~~L~al~s 181 (340)
. ......-|..+...++|.+|..+|-.+...... ...+.....+..+..+..
T Consensus 260 ~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~l~~ly~ 311 (378)
T 3q15_A 260 L-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA--RSHKFYKELFLFLQAVYK 311 (378)
T ss_dssp H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT--TCCSCHHHHHHHHHHHHS
T ss_pred H-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHh
Confidence 5 666667788888999999999999887654321 112222334455555544
No 29
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.86 E-value=0.012 Score=45.90 Aligned_cols=100 Identities=12% Similarity=-0.054 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
......+|..+++.|++++|.+.|.+..+...........+..+..+....+++..+...+.++-..- |.. ...
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~-~~~ 101 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-----GGD-VKA 101 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----SCC-HHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-----ccC-HHH
Confidence 34567889999999999999999999987765443446777788888889999999999988876641 111 233
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
....|..+...++|.+|...|-.+..
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45567778889999999999887754
No 30
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.86 E-value=0.014 Score=54.29 Aligned_cols=107 Identities=8% Similarity=-0.058 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc----hhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChh
Q 019472 51 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV----GQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWE 126 (340)
Q Consensus 51 ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~----~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~ 126 (340)
...++..+|..|...|++..|.+.+.+..+..... .........+-.++...|++..+..+..+|-......+++.
T Consensus 140 ~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 219 (378)
T 3q15_A 140 KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR 219 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 34457778888888888888888888777655321 12344555566667777888888888888777665555555
Q ss_pred hhhHhhHHHHHhccccCCHHHHHHHHHhccc
Q 019472 127 RKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 127 ~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
..+.....-|..+...++|..|..+|-++..
T Consensus 220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555556667777778888888888777654
No 31
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.85 E-value=0.082 Score=48.85 Aligned_cols=108 Identities=9% Similarity=-0.036 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc-hhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhh
Q 019472 51 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV-GQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKN 129 (340)
Q Consensus 51 ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~-~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~ 129 (340)
.......+|..++..|++++|.+.|.+..+..... ......+..+..+....|++..+...+.++-......+++....
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 35557789999999999999999999988765332 22345667777888889999999999999988776656656666
Q ss_pred HhhHHHHHhccccCCHHHHHHHHHhcccc
Q 019472 130 RLKVYEGLYCMSTRNFKKAASLFLDSIST 158 (340)
Q Consensus 130 ~l~~~~gl~~l~~r~y~~Aa~~F~e~~~~ 158 (340)
.....-|..+...++|.+|...|-.+...
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 155 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTL 155 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77777888889999999999999887643
No 32
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.83 E-value=0.015 Score=53.85 Aligned_cols=106 Identities=13% Similarity=0.006 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc----hhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV----GQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWER 127 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~----~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~ 127 (340)
..++..+|..|...|++++|.+.+.+..+.+... .........+-.+....|++..+..++.+|-......+++..
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 222 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence 4557778888888888888888888777654322 223344555556667778888888888887776655555555
Q ss_pred hhHhhHHHHHhccccCCHHHHHHHHHhccc
Q 019472 128 KNRLKVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 128 ~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
.+.....-|..+...++|.+|..+|-++..
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 556666667777788888888888777654
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.13 Score=43.65 Aligned_cols=102 Identities=10% Similarity=0.085 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcC-CChhhhhH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG-GDWERKNR 130 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~-~~~~~~~~ 130 (340)
-.++..+|..++..|++++|.+.+.+..+.. . ..+.+..+..+....|++..+...+.++-..-... .++.....
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~---~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K---DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c---cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 3557889999999999999999999988765 2 24566777788888999999999999987754322 23333355
Q ss_pred hhHHHHHhccccCCHHHHHHHHHhccc
Q 019472 131 LKVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 131 l~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
....-|..+...++|.+|...|-.+..
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~ 107 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLT 107 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 666777788889999999998887754
No 34
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.81 E-value=0.023 Score=50.10 Aligned_cols=105 Identities=12% Similarity=-0.033 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc---chhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhh
Q 019472 51 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVA---VGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWER 127 (340)
Q Consensus 51 ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~---~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~ 127 (340)
...+...+|..|...|++++|.+.+.+..+.... +......+..+..+....|++..+...+.++.......+++..
T Consensus 182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 261 (338)
T 3ro2_A 182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 261 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhH
Confidence 4445555566666666666666666555543321 2223334444555555556666666655555554444444455
Q ss_pred hhHhhHHHHHhccccCCHHHHHHHHHhc
Q 019472 128 KNRLKVYEGLYCMSTRNFKKAASLFLDS 155 (340)
Q Consensus 128 ~~~l~~~~gl~~l~~r~y~~Aa~~F~e~ 155 (340)
.......-|..+...++|.+|...|-.+
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (338)
T 3ro2_A 262 EAQSCYSLGNTYTLLQDYEKAIDYHLKH 289 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5555555555555555655555555444
No 35
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.80 E-value=0.013 Score=52.52 Aligned_cols=105 Identities=9% Similarity=-0.062 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH---hhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCC-Chhh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTE---SKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGG-DWER 127 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~---~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~-~~~~ 127 (340)
......+|.+|...|++++|.+.+.+.. ............+.++-.++...|+++.+..++.+|-...+... ++..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~ 194 (293)
T 2qfc_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF 194 (293)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc
Confidence 4555668888888888888888887764 33333444667777777777788888888888888876655433 3444
Q ss_pred hhHhhHHHHHhccccCCHHHHHHHHHhcc
Q 019472 128 KNRLKVYEGLYCMSTRNFKKAASLFLDSI 156 (340)
Q Consensus 128 ~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~ 156 (340)
......--|..+...++|.+|..+|-.+.
T Consensus 195 ~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 195 DVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 44666677888888888888888777664
No 36
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.79 E-value=0.018 Score=51.53 Aligned_cols=103 Identities=8% Similarity=0.013 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhc----cchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhh
Q 019472 54 AHLAKSLFYIQIGDKEKALEQLKVTESKTV----AVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKN 129 (340)
Q Consensus 54 ~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~----~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~ 129 (340)
++..+|..|...|++++|.++|.++.+... ........+.++..+....|++..+..++.++-......++....+
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 467788888888888888888888775432 2233445667777777888888888888888877655444445556
Q ss_pred HhhHHHHHhccccC-CHHHHHHHHHhcc
Q 019472 130 RLKVYEGLYCMSTR-NFKKAASLFLDSI 156 (340)
Q Consensus 130 ~l~~~~gl~~l~~r-~y~~Aa~~F~e~~ 156 (340)
.+...-|..+...+ +|.+|..+|-.+.
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 66677777777777 4677777776653
No 37
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.024 Score=43.40 Aligned_cols=95 Identities=12% Similarity=-0.034 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhh
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 132 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~ 132 (340)
..+..+|..+++.|++++|.+.|.+..+..... .+.+.++..+....|++..+...+.++-.. +|.. ....
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~-~~~~ 75 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---ARGYSNRAAALAKLMSFPEAIADCNKAIEK-----DPNF-VRAY 75 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCc-HHHH
Confidence 357789999999999999999999988765322 366777788888999999999999987664 1221 2344
Q ss_pred HHHHHhccccCCHHHHHHHHHhcc
Q 019472 133 VYEGLYCMSTRNFKKAASLFLDSI 156 (340)
Q Consensus 133 ~~~gl~~l~~r~y~~Aa~~F~e~~ 156 (340)
..-|..+...++|.+|...|-.+.
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHH
Confidence 556778888999999999887764
No 38
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.73 E-value=0.042 Score=48.40 Aligned_cols=104 Identities=16% Similarity=0.005 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc---chhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhH
Q 019472 54 AHLAKSLFYIQIGDKEKALEQLKVTESKTVA---VGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNR 130 (340)
Q Consensus 54 ~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~---~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~ 130 (340)
+...+|..|...|++++|.+.+.+..+.... +.........+..+....|++..+...+.++.......+++.....
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4566666666666666666666666554422 1222344555555666666666666666666666555555555555
Q ss_pred hhHHHHHhccccCCHHHHHHHHHhccc
Q 019472 131 LKVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 131 l~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
....-|..+...|+|.+|..+|-.+..
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 555566666666666666666665543
No 39
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.69 E-value=0.031 Score=51.19 Aligned_cols=103 Identities=17% Similarity=0.010 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc---chhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhH
Q 019472 54 AHLAKSLFYIQIGDKEKALEQLKVTESKTVA---VGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNR 130 (340)
Q Consensus 54 ~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~---~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~ 130 (340)
++..+|..|...|++++|.+.+.+..+.... .......+..+..+....|++..+..++.++-......+++.....
T Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 308 (406)
T 3sf4_A 229 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR 308 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4556666666666666666666665543321 1222344445555556666666666666666555444344333344
Q ss_pred hhHHHHHhccccCCHHHHHHHHHhcc
Q 019472 131 LKVYEGLYCMSTRNFKKAASLFLDSI 156 (340)
Q Consensus 131 l~~~~gl~~l~~r~y~~Aa~~F~e~~ 156 (340)
....-|..+...|+|.+|..+|-.+.
T Consensus 309 ~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 309 ACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555566666666666665554
No 40
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.68 E-value=0.023 Score=49.95 Aligned_cols=110 Identities=10% Similarity=0.003 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc-----cchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcC-
Q 019472 49 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTV-----AVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG- 122 (340)
Q Consensus 49 ~~ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~-----~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~- 122 (340)
.....++..+|..|...|++++|.+.+.+..+... ........+..+..+....|++..+...+.++-......
T Consensus 66 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (311)
T 3nf1_A 66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 145 (311)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhc
Confidence 33456688999999999999999999999887652 234556777788888899999999999999988865432
Q ss_pred -CChhhhhHhhHHHHHhccccCCHHHHHHHHHhcccc
Q 019472 123 -GDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 158 (340)
Q Consensus 123 -~~~~~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~~ 158 (340)
+++.........-|..+...++|.+|...|-.+...
T Consensus 146 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 146 GKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333334555566677888999999999998887543
No 41
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.67 E-value=0.023 Score=50.00 Aligned_cols=107 Identities=12% Similarity=0.058 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc-----cchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcC--C
Q 019472 51 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTV-----AVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG--G 123 (340)
Q Consensus 51 ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~-----~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~--~ 123 (340)
...++..+|..|...|++++|.+.+.+..+.+. ........+..+..+....|++..+...+.++-...... .
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 455688999999999999999999999887652 224456677778888889999999999999998876543 2
Q ss_pred ChhhhhHhhHHHHHhccccCCHHHHHHHHHhccc
Q 019472 124 DWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 124 ~~~~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
+..........-|..+...++|.+|...|-++..
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2223344555667788889999999999887754
No 42
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.63 E-value=0.028 Score=48.52 Aligned_cols=107 Identities=10% Similarity=0.012 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc-----chhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcC--C
Q 019472 51 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVA-----VGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG--G 123 (340)
Q Consensus 51 ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~-----~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~--~ 123 (340)
...++..+|..|...|++++|.+.+.+..+.+.. .......+..+..+....|++..+...+.++-...... .
T Consensus 84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 163 (283)
T 3edt_B 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP 163 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4556889999999999999999999998876521 23456777788888899999999999999998875442 2
Q ss_pred ChhhhhHhhHHHHHhccccCCHHHHHHHHHhccc
Q 019472 124 DWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 124 ~~~~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
+..........-|..+...++|.+|...|-++..
T Consensus 164 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 164 DDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2223344555667788889999999999887754
No 43
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.60 E-value=0.037 Score=51.24 Aligned_cols=103 Identities=16% Similarity=0.042 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc---chhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhH
Q 019472 54 AHLAKSLFYIQIGDKEKALEQLKVTESKTVA---VGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNR 130 (340)
Q Consensus 54 ~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~---~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~ 130 (340)
++..+|..|...|++++|.+.+.+..+.... .......+..+..+....|++..+..++.++.......+++.....
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 344 (411)
T 4a1s_A 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR 344 (411)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHH
Confidence 3455555555555555555555554433321 1112233444444555555555555555555554333333333333
Q ss_pred hhHHHHHhccccCCHHHHHHHHHhcc
Q 019472 131 LKVYEGLYCMSTRNFKKAASLFLDSI 156 (340)
Q Consensus 131 l~~~~gl~~l~~r~y~~Aa~~F~e~~ 156 (340)
....-|..+...++|.+|..+|-.+.
T Consensus 345 ~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 345 ACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33444445555555555555555443
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.57 E-value=0.31 Score=41.86 Aligned_cols=97 Identities=15% Similarity=0.088 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhhHH
Q 019472 55 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVY 134 (340)
Q Consensus 55 ~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~~~ 134 (340)
.+.+|..++..|++++|.+.+.++.+..... .+.+..+..+....|++..+...+.++-. ...++.........
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNS---PYIYNRRAVCYYELAKYDLAQKDIETYFS---KVNATKAKSADFEY 79 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCC---STTHHHHHHHHHHTTCHHHHHHHHHHHHT---TSCTTTCCHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHh---ccCchhHHHHHHHH
Confidence 5678999999999999999999887654322 23556666778888999999888888765 22344544555667
Q ss_pred HHHhccccCCHHHHHHHHHhccc
Q 019472 135 EGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 135 ~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
-|..+...++|.+|...|-.+..
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~ 102 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVD 102 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHh
Confidence 78888889999999988887754
No 45
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.56 E-value=0.032 Score=44.99 Aligned_cols=97 Identities=10% Similarity=-0.034 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
-..+..+|..|++.|++++|.+.|.+..+.... ....+..+..+.+..+++..+...+.++-..- |. ....
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~ 81 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA---NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-----PK-YSKA 81 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT-CHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CC-CHHH
Confidence 455788999999999999999999998876532 24567777888889999999999998877642 21 1234
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
...-|..+...++|.+|...|-.++.
T Consensus 82 ~~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 82 WSRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45667788899999999999888764
No 46
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.54 E-value=0.043 Score=47.82 Aligned_cols=108 Identities=6% Similarity=-0.057 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHH--------hcCHHHHHhHHHHHHHHHhcCC
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF--------YMDFDLISKSIDKAKSLFEEGG 123 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~--------~~~~~~~~~~i~ka~~~l~~~~ 123 (340)
..+++.+|..|+..|++++|.+.|.++.+...+.....+..+.+-.+... .|++..+...+.++-..--...
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 131 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE 131 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence 56789999999999999999999999988765444455666677777777 8899999888888765321110
Q ss_pred C-hhhhhHh----------hHHHHHhccccCCHHHHHHHHHhccccC
Q 019472 124 D-WERKNRL----------KVYEGLYCMSTRNFKKAASLFLDSISTF 159 (340)
Q Consensus 124 ~-~~~~~~l----------~~~~gl~~l~~r~y~~Aa~~F~e~~~~f 159 (340)
. +....++ ...-|..+...++|.+|...|-.+...+
T Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 178 (261)
T 3qky_A 132 LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY 178 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 0 1111111 1455788889999999999998876554
No 47
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.48 E-value=0.045 Score=42.13 Aligned_cols=97 Identities=6% Similarity=-0.093 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
-..+..+|..++..|++++|.+.|.+..+.... ..+.+..+..+....+++..+...+.++-..- |. ....
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~-~~~~ 79 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELD-----GQ-SVKA 79 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT-CHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----ch-hHHH
Confidence 345778999999999999999999998876532 24567777888888999999999888876642 11 1234
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
...-|..+...++|..|...|-.+..
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45667788889999999988887653
No 48
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.46 E-value=0.029 Score=52.00 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhcc---chhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCC-hhhhhH
Q 019472 55 HLAKSLFYIQIGDKEKALEQLKVTESKTVA---VGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGD-WERKNR 130 (340)
Q Consensus 55 ~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~---~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~-~~~~~~ 130 (340)
++-+|.++...|++++|.+.+.+..+.... +....+.+..+-.++...|++..+..++.+|.......++ +...+.
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 344899999999999999999998876432 3345677778888888999999999999999998776554 444556
Q ss_pred hhHHHHHhccccCCHHHHHHHHHhcccc
Q 019472 131 LKVYEGLYCMSTRNFKKAASLFLDSIST 158 (340)
Q Consensus 131 l~~~~gl~~l~~r~y~~Aa~~F~e~~~~ 158 (340)
....-|..+...++|.+|..+|-.+...
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 213 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSM 213 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 6667788888999999999999887643
No 49
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.0039 Score=46.35 Aligned_cols=63 Identities=5% Similarity=-0.156 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 118 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 118 (340)
.++..+|..++..|++++|.+.|.+..+..... ...+.++-.+....|++..+...+.++-..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 457789999999999999999999988755322 355667778888999999999998887664
No 50
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.39 E-value=0.033 Score=41.09 Aligned_cols=96 Identities=10% Similarity=-0.059 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhh
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 132 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~ 132 (340)
.++..+|..+...|++++|.+.+.+..+.... ..+....+..+....+++..+...+.++-..- |. .....
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~-~~~~~ 75 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH---NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-----PD-WGKGY 75 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TT-CHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-----cc-cHHHH
Confidence 45778999999999999999999998865432 24566677778888999999998888876641 11 12334
Q ss_pred HHHHHhccccCCHHHHHHHHHhccc
Q 019472 133 VYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 133 ~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
..-|..+...++|.+|...|-.+..
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5566777889999999999887754
No 51
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.33 E-value=0.34 Score=40.81 Aligned_cols=100 Identities=9% Similarity=-0.031 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhh---hh
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWER---KN 129 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~---~~ 129 (340)
.+...+|..|...|++++|.+.+.+..+.... ..+.+..+..+....|++..+...+.++-..-. .++.. ..
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~ 117 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYN---LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVP--GNATIEKLYA 117 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHH
Confidence 34556899999999999999999888764422 345667777888888999999888888766421 12221 23
Q ss_pred HhhHHHHHhccccCCHHHHHHHHHhccc
Q 019472 130 RLKVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 130 ~l~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
......|..+...++|.+|...|-.++.
T Consensus 118 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 118 IYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 4556677788889999999999988754
No 52
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.31 E-value=0.014 Score=47.07 Aligned_cols=94 Identities=7% Similarity=-0.076 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
-.+.+.+|.+|++.|+|++|.+.|.++.+.... -.+.+..+-.+....|++..+...+.++-..- ..+++ .
T Consensus 31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~----~ 101 (150)
T 4ga2_A 31 SIKGFYFAKLYYEAKEYDLAKKYICTYINVQER---DPKAHRFLGLLYELEENTDKAVECYRRSVELN--PTQKD----L 101 (150)
T ss_dssp HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH----H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CCCHH----H
Confidence 344788999999999999999999998865432 24566777788888999999999998876641 11222 2
Q ss_pred hHHHHHhccccCCHHHHHHHHHh
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLD 154 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e 154 (340)
...-|..+...++|.+|+..|++
T Consensus 102 ~~~la~~~~~~~~~~~aa~~~~~ 124 (150)
T 4ga2_A 102 VLKIAELLCKNDVTDGRAKYWVE 124 (150)
T ss_dssp HHHHHHHHHHHCSSSSHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHH
Confidence 23345667788899999998876
No 53
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.31 E-value=0.018 Score=43.76 Aligned_cols=97 Identities=12% Similarity=0.052 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
..++..+|..++..|++++|.+.+.+..+.... ..+....+..+....+++..+...+.++-..- |. ....
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~~-~~~~ 86 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK---DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-----PT-FIKG 86 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT---CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-----TT-CHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CC-chHH
Confidence 456788999999999999999999998865422 24566677777888899999999988877641 11 1234
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
....|..+...++|.+|...|-.+..
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45567778889999999999887753
No 54
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.26 E-value=0.038 Score=49.43 Aligned_cols=96 Identities=7% Similarity=-0.062 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhh
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 132 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~ 132 (340)
.+...+|..+++.|++++|.+.|.+..+.... ....+.++..+....|++..+...+.++-.. +|.. ....
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~-~~~~ 75 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALEL-----DGQS-VKAH 75 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-----CTTC-HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCC-HHHH
Confidence 35678999999999999999999998875432 2456677778888999999999988887653 2221 2334
Q ss_pred HHHHHhccccCCHHHHHHHHHhccc
Q 019472 133 VYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 133 ~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
..-|..+...++|.+|...|-.+..
T Consensus 76 ~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 76 FFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5567888899999999999887653
No 55
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.25 E-value=0.055 Score=40.52 Aligned_cols=97 Identities=9% Similarity=-0.046 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
...+..+|..+...|++++|.+.+.+..+.... ....+..+..+....+++..+...+.++-..- |.. ...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~-~~~ 82 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPA---NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-----PAY-SKA 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-HHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-----ccC-HHH
Confidence 456788999999999999999999998865432 24566777788888999999999988876641 111 234
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
....|..+...++|..|...|-.+..
T Consensus 83 ~~~~~~~~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 83 YGRMGLALSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 45667788889999999999888754
No 56
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.23 E-value=0.047 Score=43.20 Aligned_cols=97 Identities=10% Similarity=-0.066 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
...+..+|..++..|++++|.+.+.+..+.... ..+.+..+..+....|++..+...+.++-..- |. ....
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~-~~~~ 83 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELD-----KK-YIKG 83 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT-CHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cc-cHHH
Confidence 445889999999999999999999998865432 24566777788888999999999998877642 11 1223
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
....|..+...++|.+|...|-.+..
T Consensus 84 ~~~~a~~~~~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 84 YYRRAASNMALGKFRAALRDYETVVK 109 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45567778889999999999887754
No 57
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.17 E-value=0.046 Score=44.46 Aligned_cols=97 Identities=13% Similarity=0.028 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
..+++.+|..+++.|++++|.+.|.++.+.... -.+.+.++-.+....|++..+...+.++-..-- .+|. .
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~---~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P--~~~~----~ 106 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY---NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK--NDYT----P 106 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS--SCCH----H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC--CCcH----H
Confidence 557889999999999999999999998865432 235566677788889999999999999877421 1222 3
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
...-|..+...|+|.+|...|-.+..
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45667888899999999999987754
No 58
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.13 E-value=0.038 Score=49.33 Aligned_cols=103 Identities=8% Similarity=-0.050 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhccc---hhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcC-CChhhhhH
Q 019472 55 HLAKSLFYIQIGDKEKALEQLKVTESKTVAV---GQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG-GDWERKNR 130 (340)
Q Consensus 55 ~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~---~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~-~~~~~~~~ 130 (340)
+..+|.+|...|++++|.+.+.++.+..... ...+..+.++-.++...|+++.+..++.++-...... .++.....
T Consensus 118 ~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (293)
T 3u3w_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK 197 (293)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 4458888888889999999998888643222 1224455666667778889999998888888766543 44444555
Q ss_pred hhHHHHHhccccCCHHHHHHHHHhccc
Q 019472 131 LKVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 131 l~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
+..--|..+...++|.+|..+|-.+..
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 666677778888899988888877653
No 59
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.11 E-value=0.055 Score=43.36 Aligned_cols=97 Identities=11% Similarity=-0.055 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
..+.+.+|..++..|++++|.+.|.++...... -.+.+..+-.+....|++..+...+.++-..- ..++ ..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~----~~ 91 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY---DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEP----RF 91 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCT----HH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCc----hH
Confidence 456778999999999999999999988765432 23455667777888999999999999886642 1122 23
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
...-|..+...|+|.+|...|-.+..
T Consensus 92 ~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 92 PFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35568888999999999998877653
No 60
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.08 E-value=0.077 Score=47.43 Aligned_cols=106 Identities=10% Similarity=0.008 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc---cchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhh
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKTV---AVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKN 129 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~---~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~ 129 (340)
..+.+.|..|...|++++|.++|.+..+... .+......+.++-.+....|++..+..++.+|-.+....+++...+
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3455668899999999999999999886543 2233355666777778888999999999999988766556665555
Q ss_pred HhhHHHHHhcccc-CCHHHHHHHHHhcccc
Q 019472 130 RLKVYEGLYCMST-RNFKKAASLFLDSIST 158 (340)
Q Consensus 130 ~l~~~~gl~~l~~-r~y~~Aa~~F~e~~~~ 158 (340)
....--|..+... ++|.+|..+|-.+..-
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~ 147 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEW 147 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 5555566677776 9999999999887643
No 61
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.07 E-value=0.06 Score=42.38 Aligned_cols=96 Identities=9% Similarity=-0.087 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
..+.+.+|..++..|++++|.+.|.++...... -.+.+..+-.+....|++..+...+.++-..- ..++. .
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~----~ 88 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY---DARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPR----F 88 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTH----H
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcH----H
Confidence 455778999999999999999999998765432 23556667778888999999999999887642 11222 3
Q ss_pred hHHHHHhccccCCHHHHHHHHHhcc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSI 156 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~ 156 (340)
....|..+...++|.+|...|-.+.
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3566888889999999998887764
No 62
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.06 E-value=0.065 Score=44.67 Aligned_cols=103 Identities=12% Similarity=0.026 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCC---------
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGG--------- 123 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~--------- 123 (340)
.++..+|..|...|++++|.+.+.+..+.... ....+..+..+....|++..+...+.++-.......
T Consensus 38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 114 (213)
T 1hh8_A 38 RICFNIGCMYTILKNMTEAEKAFTRSINRDKH---LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTB
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhcc
Confidence 46888999999999999999999998865422 245667777888889999999999998876432211
Q ss_pred -ChhhhhHhhHHHHHhccccCCHHHHHHHHHhcccc
Q 019472 124 -DWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 158 (340)
Q Consensus 124 -~~~~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~~ 158 (340)
...........-|..+...++|..|...|-.+...
T Consensus 115 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 115 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 00012245566777888899999999998887643
No 63
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.05 E-value=0.07 Score=47.58 Aligned_cols=106 Identities=10% Similarity=0.056 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh---hccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhh
Q 019472 51 VREAHLAKSLFYIQIGDKEKALEQLKVTESK---TVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWER 127 (340)
Q Consensus 51 ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~---~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~ 127 (340)
-.......+..++..|+|++|.+.+.+..+. .......+.....+..+....|++..+..++.++-.......++..
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 3456667899999999999999999887642 3444566776777777777888999999999998775545556666
Q ss_pred hhHhhHHHHHhccccCCHHHHHHHHHhcc
Q 019472 128 KNRLKVYEGLYCMSTRNFKKAASLFLDSI 156 (340)
Q Consensus 128 ~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~ 156 (340)
.......-|..+...++|.+|..+|-.+.
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777888999999999999999998876
No 64
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.04 E-value=0.58 Score=39.62 Aligned_cols=96 Identities=14% Similarity=0.080 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhhH
Q 019472 54 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 133 (340)
Q Consensus 54 ~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~~ 133 (340)
++..+|..|...|++++|.+.+.++.+.... ....+..+..+....|++..+...+.++-. ...+|. ......
T Consensus 73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~~-~~~~~~ 145 (252)
T 2ho1_A 73 AHAALAVVFQTEMEPKLADEEYRKALASDSR---NARVLNNYGGFLYEQKRYEEAYQRLLEASQ---DTLYPE-RSRVFE 145 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---CTTCTT-HHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh---CccCcc-cHHHHH
Confidence 3445555555555555555555554433211 123334444444555555555555554433 001111 112223
Q ss_pred HHHHhccccCCHHHHHHHHHhcc
Q 019472 134 YEGLYCMSTRNFKKAASLFLDSI 156 (340)
Q Consensus 134 ~~gl~~l~~r~y~~Aa~~F~e~~ 156 (340)
..|..+...++|.+|...|-.+.
T Consensus 146 ~la~~~~~~g~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 146 NLGLVSLQMKKPAQAKEYFEKSL 168 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444445555555555555443
No 65
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.03 E-value=0.1 Score=43.36 Aligned_cols=100 Identities=9% Similarity=-0.036 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccch-------------hHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVG-------------QKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 118 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~-------------~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 118 (340)
......+|..++..|+|++|.+.|.+..+.+.... .....+.++..+++..+++..+...+.++-..
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 44578899999999999999999999887553221 01366677788888999999999999988764
Q ss_pred HhcCCChhhhhHhhHHHHHhccccCCHHHHHHHHHhccc
Q 019472 119 FEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 119 l~~~~~~~~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
+|. ........|..+...++|..|...|-.+..
T Consensus 118 -----~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 118 -----DKN-NVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp -----STT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----Ccc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 121 123445667788899999999999887754
No 66
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.02 E-value=0.076 Score=38.65 Aligned_cols=97 Identities=4% Similarity=-0.066 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhhHH
Q 019472 55 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVY 134 (340)
Q Consensus 55 ~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~~~ 134 (340)
...+|..+...|++++|.+.+.++.+..... .+.+..+..+....+++..+...+.++-..- .+ .........
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~-~~~~~~~~~ 81 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEE---SKYWLMKGKALYNLERYEEAVDCYNYVINVI---ED-EYNKDVWAA 81 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS---CC-TTCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---cc-cchHHHHHH
Confidence 4568999999999999999999988655322 3456677778888999999999888876541 11 112234456
Q ss_pred HHHhcccc-CCHHHHHHHHHhcccc
Q 019472 135 EGLYCMST-RNFKKAASLFLDSIST 158 (340)
Q Consensus 135 ~gl~~l~~-r~y~~Aa~~F~e~~~~ 158 (340)
.|..+... ++|.+|...|-.+...
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 67778889 9999999999887654
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.00 E-value=0.04 Score=44.96 Aligned_cols=96 Identities=10% Similarity=-0.090 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhh
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 132 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~ 132 (340)
..++.||..|.+.|++++|.+.|.++.+...+ -.+....+..+....|++..+...+.++...-. .+ ....
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~ 76 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN---NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT--TS----AEAY 76 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CC----HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--hh----HHHH
Confidence 34778999999999999999999998875432 246677788888899999999988888765321 11 2233
Q ss_pred HHHHHhccccCCHHHHHHHHHhccc
Q 019472 133 VYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 133 ~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
...|..+...++|..|...|-.+..
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~a~~ 101 (184)
T 3vtx_A 77 YILGSANFMIDEKQAAIDALQRAIA 101 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567777888999999988887654
No 68
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.072 Score=48.11 Aligned_cols=155 Identities=12% Similarity=0.092 Sum_probs=97.0
Q ss_pred hhHHHHHhccccCCHHHHHHHHHhccccCC-cCcc--CCHh--HHHHHHHHHHhhhcChhHHHHhc--cCChHHHHHhcC
Q 019472 131 LKVYEGLYCMSTRNFKKAASLFLDSISTFT-TYEL--FPYD--TFIFYTVLTSIISLDRVSLKQKV--VDAPEILTVIGK 203 (340)
Q Consensus 131 l~~~~gl~~l~~r~y~~Aa~~F~e~~~~f~-~~e~--~~~~--~~~~Y~~L~al~s~~r~~l~~~l--l~~~~~~~~l~~ 203 (340)
+....+++.+..+|+..--+++-...+-|. ..+. .++. .+.-|-+|.-+.++..+++...+ +... ... +.+
T Consensus 61 v~E~~a~~si~~~D~~~F~~~~~QLk~~Y~d~~~~l~~s~~~~e~~~~~LLylL~~n~~~efh~~Le~L~~~-~~~-~~~ 138 (274)
T 4b4t_T 61 ILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKH-IKN-LED 138 (274)
T ss_dssp CHHHHHHCCSSCSSHHHHHHHHHHHHHHTTTTSSCSSCSHHHHHHHHHHHHHHHHHHCSTHHHHHHHSSSCS-SST-TTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhcchh-hHh-Hhc
Confidence 556778888889987665555443322221 1111 1222 66667777777777777775422 1110 001 223
Q ss_pred cchH---HHHHHHHHhccHHHHHHHHHHhHHHhhcChhHhhhHHHHHHHHHHHHHHHhhhhhccccHHHHHHHhCCChHH
Q 019472 204 IPYL---SEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEF 280 (340)
Q Consensus 204 ~p~l---~~ll~af~~~~~~~~~~~L~~~~~~l~~D~~l~~h~~~l~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~ 280 (340)
.|.+ .++-.++.+++|..|++.+..... --+...--.+.+...+|..++....+.|.+++++.+++.++.+-+
T Consensus 139 d~~Ik~al~le~al~eGnY~kff~l~~~~~~---p~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~- 214 (274)
T 4b4t_T 139 DSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQ---NISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNE- 214 (274)
T ss_dssp CHHHHHHHHHHHHHHHTCSHHHHHHHHTCTT---CCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSH-
T ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHhcCCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCH-
Confidence 4543 455667889999999987654211 011223446788899999999999999999999999999999543
Q ss_pred HHHHHHHHhhCCc
Q 019472 281 IDVELSRFIAAGK 293 (340)
Q Consensus 281 vE~~L~~lI~~g~ 293 (340)
+++.+++....
T Consensus 215 --~e~~~F~~~~g 225 (274)
T 4b4t_T 215 --KETEKFALERN 225 (274)
T ss_dssp --HHHHHHHHHTT
T ss_pred --HHHHHHHHHcC
Confidence 24556655543
No 69
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=95.92 E-value=0.077 Score=39.69 Aligned_cols=95 Identities=14% Similarity=0.066 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhhH
Q 019472 54 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 133 (340)
Q Consensus 54 ~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~~ 133 (340)
+...+|..|...|++++|.+.+.+..+.... ....+..+..+....+++..+...+.++...- ..++ ....
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~----~~~~ 73 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSA----EAWY 73 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCH----HHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc---chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCch----HHHH
Confidence 4677899999999999999999988765422 23455666777888899999998888876531 1111 2233
Q ss_pred HHHHhccccCCHHHHHHHHHhccc
Q 019472 134 YEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 134 ~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
..|..+...++|..|...|-.+..
T Consensus 74 ~l~~~~~~~~~~~~A~~~~~~~~~ 97 (136)
T 2fo7_A 74 NLGNAYYKQGDYDEAIEYYQKALE 97 (136)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 456677788999999888877653
No 70
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=95.87 E-value=0.079 Score=39.24 Aligned_cols=97 Identities=14% Similarity=0.089 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
..+...+|..+...|++++|.+.+.+..+.... ..+.+..+..+....|++..+...+.++-..- ..++ ..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~----~~ 79 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNA----EA 79 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH----HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccH----HH
Confidence 345778999999999999999999998865422 23566677788888999999999888876531 1111 23
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
...-|..+...++|..|...|-.+..
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 80 WYNLGNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34456677788999999998877654
No 71
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=95.83 E-value=0.038 Score=48.51 Aligned_cols=120 Identities=15% Similarity=0.226 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhhhcChhHHHHh--ccCChHHHHHhcCcch---HHHHHHHHHhccHHHHHHHHHHhHHHhhcChhHhhhH
Q 019472 169 TFIFYTVLTSIISLDRVSLKQK--VVDAPEILTVIGKIPY---LSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLYPHF 243 (340)
Q Consensus 169 ~~~~Y~~L~al~s~~r~~l~~~--ll~~~~~~~~l~~~p~---l~~ll~af~~~~~~~~~~~L~~~~~~l~~D~~l~~h~ 243 (340)
+++...+|.+|+.++-+|+..- ++. +.+ ...|. +..+-+...+|+|..|.+.++. ++=+.+.+
T Consensus 64 ~ii~~iLlk~L~~~p~~DF~~~l~LIp-~~~----~~~~~I~~i~~L~~~L~~~~y~~fW~~l~~-------~~~l~~~i 131 (226)
T 1rz4_A 64 TVTAQILLKALTNLPHTDFTLCKCMID-QAH----QEERPIRQILYLGDLLETCHFQAFWQALDE-------NMDLLEGI 131 (226)
T ss_dssp HHHHHHHHHHHHTTTSTHHHHHHHTSC-HHH----HTSTTHHHHHHHHHHHHTTCHHHHHHHSCT-------TCHHHHTS
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhCC-hhh----hcCHHHHHHHHHHHHHHcCCHHHHHHHHhc-------ChhHHHHH
Confidence 4444555667766666666431 221 221 23444 4556677889999999887643 23344445
Q ss_pred HHHHHHHHHHHHHHhhhhhccccHHHHHHHhC-CChHHHHHHHHHHhhCCccceEEecCCCEEEE
Q 019472 244 RYYMREVRTVVYSQFLESYKSVTIEAMAKAFG-VTVEFIDVELSRFIAAGKLHCKIDKVAGVLET 307 (340)
Q Consensus 244 ~~l~~~ir~~~l~q~i~pYs~I~l~~mA~~~g-~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~ 307 (340)
..|.+.+|..+..-.-..|++|+++.+++.+| ++.+++++++.+. .=++| .+|.|.+
T Consensus 132 ~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~~~------GW~vd-~~g~I~~ 189 (226)
T 1rz4_A 132 TGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKY------GWSAD-ESGQIFI 189 (226)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHHHH------TCEEC-C--CEEC
T ss_pred hHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHHHC------CCEEC-CCccEEe
Confidence 66888899988777777899999999999995 8998888888772 22565 4556644
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=95.83 E-value=0.78 Score=44.07 Aligned_cols=96 Identities=8% Similarity=-0.142 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHhCCH-HHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhH
Q 019472 52 REAHLAKSLFYIQIGDK-EKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNR 130 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~-~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~ 130 (340)
..+++.+|..|...|++ ++|.+.|.+..+.... ..+.+..+-.++...|++..+...+.++-.. +|+ ..
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~--~~ 171 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE---LVEAWNQLGEVYWKKGDVTSAHTCFSGALTH-----CKN--KV 171 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----CCC--HH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCC--HH
Confidence 44588999999999999 9999999998865432 2456677778888899999999998887653 333 34
Q ss_pred hhHHHHHhcccc---------CCHHHHHHHHHhccc
Q 019472 131 LKVYEGLYCMST---------RNFKKAASLFLDSIS 157 (340)
Q Consensus 131 l~~~~gl~~l~~---------r~y~~Aa~~F~e~~~ 157 (340)
....-|..+... ++|.+|...|-.+..
T Consensus 172 ~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 207 (474)
T 4abn_A 172 SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ 207 (474)
T ss_dssp HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH
Confidence 555667777777 899999999988764
No 73
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.79 E-value=0.2 Score=41.35 Aligned_cols=101 Identities=15% Similarity=0.052 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhccc------hh---HHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCC--
Q 019472 55 HLAKSLFYIQIGDKEKALEQLKVTESKTVAV------GQ---KMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGG-- 123 (340)
Q Consensus 55 ~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~------~~---~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~-- 123 (340)
...+|..+++.|+|++|++.|.+..+...+. .+ ....+.+.-.+....|++..+....++|-.+++..+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 6789999999999999999999999877541 11 123566666777788999999999999988644322
Q ss_pred ChhhhhHhh----HHHHHhccccCCHHHHHHHHHhcc
Q 019472 124 DWERKNRLK----VYEGLYCMSTRNFKKAASLFLDSI 156 (340)
Q Consensus 124 ~~~~~~~l~----~~~gl~~l~~r~y~~Aa~~F~e~~ 156 (340)
+|+ ..+.- .-.|..+...++|.+|...|-.+.
T Consensus 94 ~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 94 NQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp TST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 232 12222 456778888999999999998775
No 74
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=95.79 E-value=0.74 Score=40.75 Aligned_cols=96 Identities=13% Similarity=0.108 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhh
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 132 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~ 132 (340)
..++.+|..++..|++++|.+.+.++.+.... ..+....+..+....|++..+...+.++-.. +|.. ....
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~-~~~~ 74 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIAL-----KMDF-TAAR 74 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTC-HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCc-chHH
Confidence 45788999999999999999999998875532 2456777788888999999999999887664 1211 1344
Q ss_pred HHHHHhccccCCHHHHHHHHHhccc
Q 019472 133 VYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 133 ~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
..-|..+...++|.+|...|-.+..
T Consensus 75 ~~l~~~~~~~~~~~~A~~~~~~~~~ 99 (359)
T 3ieg_A 75 LQRGHLLLKQGKLDEAEDDFKKVLK 99 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHh
Confidence 5667788889999999999988754
No 75
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=95.72 E-value=0.068 Score=46.20 Aligned_cols=99 Identities=15% Similarity=0.038 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhhH
Q 019472 54 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 133 (340)
Q Consensus 54 ~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~~ 133 (340)
+...+|..|...|++++|.+.+.++.+....+......+..+..+....|++..+...+.++-..-.. + .....
T Consensus 39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~--~----~~~~~ 112 (272)
T 3u4t_A 39 IYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT--R----LDMYG 112 (272)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--C----THHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc--c----HHHHH
Confidence 57788999999999999999999988743333334555777888888999999999999988764211 1 12345
Q ss_pred HHHHhccccCCHHHHHHHHHhcccc
Q 019472 134 YEGLYCMSTRNFKKAASLFLDSIST 158 (340)
Q Consensus 134 ~~gl~~l~~r~y~~Aa~~F~e~~~~ 158 (340)
.-|..+...++|.+|...|-.+...
T Consensus 113 ~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 113 QIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred HHHHHHHHccCHHHHHHHHHHHhhc
Confidence 5677778899999999999887643
No 76
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=95.60 E-value=0.77 Score=37.69 Aligned_cols=97 Identities=9% Similarity=0.045 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
..++..+|..+...|++++|.+.+.+..+..... .+....+..+....|++..+...+.++-..-. .+ ...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~----~~~ 78 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN---ELAWLVRAEIYQYLKVNDKAQESFRQALSIKP--DS----AEI 78 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----HHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc---hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CC----hHH
Confidence 4457789999999999999999999888755322 34566677778888999999988888766421 11 123
Q ss_pred hHHHHHhcccc-CCHHHHHHHHHhccc
Q 019472 132 KVYEGLYCMST-RNFKKAASLFLDSIS 157 (340)
Q Consensus 132 ~~~~gl~~l~~-r~y~~Aa~~F~e~~~ 157 (340)
....|..+... ++|.+|...|-.+..
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 79 NNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 34556677788 999999999888765
No 77
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.60 E-value=0.15 Score=37.62 Aligned_cols=69 Identities=10% Similarity=-0.042 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCC
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGD 124 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~ 124 (340)
.+++.+|..|++.|++++|.+.+.++.+.... ..+.+..+-.+....|++..+...+.++-..-...++
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPD---YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 45788999999999999999999998875532 2346677778888899999999999998876543333
No 78
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=95.58 E-value=0.91 Score=38.37 Aligned_cols=98 Identities=18% Similarity=0.138 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhH
Q 019472 51 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNR 130 (340)
Q Consensus 51 ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~ 130 (340)
...++..+|..|...|++++|.+.+.++.+.... .......+..+....|++..+...+.++-..-. .+ ..
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~----~~ 106 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS---SADAHAALAVVFQTEMEPKLADEEYRKALASDS--RN----AR 106 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----HH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--Cc----HH
Confidence 3566889999999999999999999998865432 245667777888889999999999988766411 11 22
Q ss_pred hhHHHHHhccccCCHHHHHHHHHhccc
Q 019472 131 LKVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 131 l~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
....-|..+...++|.+|...|-.+..
T Consensus 107 ~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 107 VLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 334456677889999999999988765
No 79
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=95.54 E-value=0.15 Score=43.45 Aligned_cols=104 Identities=15% Similarity=0.078 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhh-hhHh
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWER-KNRL 131 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~-~~~l 131 (340)
.+.+.+|..+++.|++++|.+.|.++.+.........+..+.+..+....|+|..+...+.++-..--. ++.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~--~~~~~~a~- 81 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT--HPNIDYVM- 81 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTTHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC--CCcHHHHH-
Confidence 357788999999999999999999998765444444567777888889999999998888876553211 1110 111
Q ss_pred hHHHHHh------------------ccccCCHHHHHHHHHhccccCC
Q 019472 132 KVYEGLY------------------CMSTRNFKKAASLFLDSISTFT 160 (340)
Q Consensus 132 ~~~~gl~------------------~l~~r~y~~Aa~~F~e~~~~f~ 160 (340)
...|.. ....+++.+|...|-.++..+.
T Consensus 82 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P 127 (225)
T 2yhc_A 82 -YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP 127 (225)
T ss_dssp -HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT
T ss_pred -HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc
Confidence 122222 2236789999888888766553
No 80
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.48 E-value=0.15 Score=47.70 Aligned_cols=100 Identities=9% Similarity=-0.026 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc-------------chhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVA-------------VGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 118 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~-------------~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 118 (340)
..++..+|..+++.|+|++|.+.|.++.+.+.. .......+.++..+++..+++..+..++.+|-..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 445889999999999999999999998874422 2234567778888889999999999998887663
Q ss_pred HhcCCChhhhhHhhHHHHHhccccCCHHHHHHHHHhccc
Q 019472 119 FEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 119 l~~~~~~~~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
+|. ..+.....|..+...++|.+|...|-.+..
T Consensus 303 -----~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 303 -----DPS-NTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp -----CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----Cch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 222 133445667788889999999999887753
No 81
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=95.39 E-value=0.21 Score=45.74 Aligned_cols=101 Identities=16% Similarity=0.078 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc------------hhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 019472 51 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV------------GQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 118 (340)
Q Consensus 51 ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~------------~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 118 (340)
...++..+|..|++.|++++|.+.|.+..+..... ......+.++..+.+..+++..+...+.++-..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35568899999999999999999999988765332 112567788888899999999999999988764
Q ss_pred HhcCCChhhhhHhhHHHHHhccccCCHHHHHHHHHhccc
Q 019472 119 FEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 119 l~~~~~~~~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
- |. ........|..+...++|.+|...|-.++.
T Consensus 226 ~-----p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 226 D-----SN-NEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp C-----TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-----CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 21 123345667788899999999999988754
No 82
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=95.38 E-value=0.18 Score=48.43 Aligned_cols=101 Identities=14% Similarity=0.007 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc------------hhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 019472 51 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV------------GQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 118 (340)
Q Consensus 51 ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~------------~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 118 (340)
...++..+|..|++.|+|++|.+.|.++.+..... ......+.++..+++..++|..+...+.+|-..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 34558889999999999999999999988765332 123567778888889999999999999998764
Q ss_pred HhcCCChhhhhHhhHHHHHhccccCCHHHHHHHHHhccc
Q 019472 119 FEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 119 l~~~~~~~~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
- |. ..+.....|..++..++|.+|...|-.+..
T Consensus 347 ~-----p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 347 D-----SA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp S-----TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred C-----Cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2 21 123345567888899999999999988754
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=95.35 E-value=0.24 Score=41.79 Aligned_cols=98 Identities=7% Similarity=-0.055 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhh
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 132 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~ 132 (340)
.+...+|..|+..|++++|.+.|.++.+....++. ........+....|++..+...+.++-.. +|. .....
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~-~~~~~ 79 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS--VTAYNCGVCADNIKKYKEAADYFDIAIKK-----NYN-LANAY 79 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCS-HHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc--HHHHHHHHHHHHhhcHHHHHHHHHHHHHh-----Ccc-hHHHH
Confidence 45778999999999999999999998876631222 44555677788899999999999887653 222 23344
Q ss_pred HHHHHhccccCCHHHHHHHHHhcccc
Q 019472 133 VYEGLYCMSTRNFKKAASLFLDSIST 158 (340)
Q Consensus 133 ~~~gl~~l~~r~y~~Aa~~F~e~~~~ 158 (340)
..-|..+...++|.+|...|-.+...
T Consensus 80 ~~l~~~~~~~~~~~~A~~~~~~al~~ 105 (228)
T 4i17_A 80 IGKSAAYRDMKNNQEYIATLTEGIKA 105 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 56677888999999999999887654
No 84
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.33 E-value=0.099 Score=39.60 Aligned_cols=66 Identities=8% Similarity=-0.108 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 118 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 118 (340)
.+.+.+|..|++.|++++|.+.+.++.+...+.....+..+.+..+....|++..+...+.++-..
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 578889999999999999999999988766544444566777888888999999999988887653
No 85
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=95.30 E-value=0.15 Score=37.98 Aligned_cols=95 Identities=15% Similarity=0.082 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhh
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 132 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~ 132 (340)
.+...+|..+...|++++|.+.+.+....... .......+..+....|++..+...+.++..... .++ ...
T Consensus 36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~~ 106 (136)
T 2fo7_A 36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--RSA----EAW 106 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCH----HHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC---chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCh----HHH
Confidence 45677899999999999999999998765432 134556677788888999999988888765321 111 222
Q ss_pred HHHHHhccccCCHHHHHHHHHhcc
Q 019472 133 VYEGLYCMSTRNFKKAASLFLDSI 156 (340)
Q Consensus 133 ~~~gl~~l~~r~y~~Aa~~F~e~~ 156 (340)
..-|..+...+++..|...|-++.
T Consensus 107 ~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 107 YNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHH
Confidence 344666778899999998887764
No 86
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=95.28 E-value=1 Score=37.60 Aligned_cols=97 Identities=9% Similarity=-0.023 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
..+...+|..|...|++++|.+.+.++.+.... ....+..+..+....|++..+...+.++...-. .+ ...
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~ 127 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELDSS---AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM--EN----GDL 127 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--CS----HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc---chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CC----HHH
Confidence 456778999999999999999999988765422 245666777888889999999988888766421 11 123
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
....|..+...++|.+|...|-.+..
T Consensus 128 ~~~~a~~~~~~~~~~~A~~~~~~~~~ 153 (243)
T 2q7f_A 128 FYMLGTVLVKLEQPKLALPYLQRAVE 153 (243)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44556777889999999998887754
No 87
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=95.16 E-value=0.21 Score=39.25 Aligned_cols=97 Identities=11% Similarity=0.003 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
..++..+|..|...|++++|.+.+.+..+.... ..+.+..+..+....|++..+...+.++-..-. .++. ...
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p--~~~~--~~~ 119 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKK---YIKGYYRRAASNMALGKFRAALRDYETVVKVKP--HDKD--AKM 119 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHH--HHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHH--HHH
Confidence 455788999999999999999999998875432 235666777788889999999999988766421 1222 222
Q ss_pred hHHHHHhccccCCHHHHHHHHHhc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDS 155 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~ 155 (340)
....+..++..++|.+|...+-..
T Consensus 120 ~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 120 KYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccch
Confidence 233333455678888888776543
No 88
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=95.13 E-value=0.21 Score=44.04 Aligned_cols=97 Identities=14% Similarity=0.089 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
..++..+|..|...|++++|.+.+.+..+..... ......+..+....|++..+...+.++-..-. .++ ..
T Consensus 125 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~----~~ 195 (330)
T 3hym_B 125 GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC---HLPMLYIGLEYGLTNNSKLAERFFSQALSIAP--EDP----FV 195 (330)
T ss_dssp THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--TCH----HH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC--CCh----HH
Confidence 3457788888888888888888888877655321 23344466667778888888888877665321 122 23
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
....|..+...++|.+|...|-.+..
T Consensus 196 ~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 196 MHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34556677778888888877776653
No 89
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=95.09 E-value=1.6 Score=38.43 Aligned_cols=100 Identities=13% Similarity=0.135 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhh---H
Q 019472 54 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKN---R 130 (340)
Q Consensus 54 ~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~---~ 130 (340)
+...+|..|...|++++|.+.+.++.+.... ..+.+..+..+....|++..+...+.++-..-. .++.... .
T Consensus 156 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~~~ 230 (359)
T 3ieg_A 156 LRELRAECFIKEGEPRKAISDLKAASKLKSD---NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ--DHKRCFAHYKQ 230 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--cchHHHHHHHH
Confidence 4556677777777777777777666654321 124455566666667777777776666554311 1111110 0
Q ss_pred -----hhHHHHHhccccCCHHHHHHHHHhcccc
Q 019472 131 -----LKVYEGLYCMSTRNFKKAASLFLDSIST 158 (340)
Q Consensus 131 -----l~~~~gl~~l~~r~y~~Aa~~F~e~~~~ 158 (340)
.....|..+...++|.+|...|-.+...
T Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 263 (359)
T 3ieg_A 231 VKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 1123366677788888888888776543
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=95.03 E-value=0.3 Score=41.56 Aligned_cols=108 Identities=6% Similarity=-0.040 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHH------------------hcCHHHHHhHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF------------------YMDFDLISKSID 113 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~------------------~~~~~~~~~~i~ 113 (340)
..+.+.+|..|++.|++++|.+.|.++.+...+....-+....+-.+... .|++..+...+.
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 120 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFS 120 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHH
Confidence 46788999999999999999999999987664433322222222222222 345666655555
Q ss_pred HHHHHH-hcCCChhhhh----------HhhHHHHHhccccCCHHHHHHHHHhccccC
Q 019472 114 KAKSLF-EEGGDWERKN----------RLKVYEGLYCMSTRNFKKAASLFLDSISTF 159 (340)
Q Consensus 114 ka~~~l-~~~~~~~~~~----------~l~~~~gl~~l~~r~y~~Aa~~F~e~~~~f 159 (340)
++-... +...-+.... ......|.++...++|..|...|-.++..+
T Consensus 121 ~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 177 (225)
T 2yhc_A 121 KLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY 177 (225)
T ss_dssp HHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC
Confidence 543321 1000011111 122455777888999999999888876655
No 91
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=95.02 E-value=0.18 Score=40.09 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhh
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 132 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~ 132 (340)
.+...+|..|...|++++|.+.+.++.+.... ....+..+..+....|++..+...+.++...-. .+ ....
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~ 113 (186)
T 3as5_A 43 DVALHLGIAYVKTGAVDRGTELLERSLADAPD---NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP--IN----FNVR 113 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TC----HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc--Hh----HHHH
Confidence 45667788888888888888888777655322 134455566667777888877777777655311 11 1233
Q ss_pred HHHHHhccccCCHHHHHHHHHhccc
Q 019472 133 VYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 133 ~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
...|..+...++|.+|...|-.+..
T Consensus 114 ~~~a~~~~~~~~~~~A~~~~~~~~~ 138 (186)
T 3as5_A 114 FRLGVALDNLGRFDEAIDSFKIALG 138 (186)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHh
Confidence 4445566677788888777766543
No 92
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.02 E-value=0.24 Score=46.02 Aligned_cols=105 Identities=15% Similarity=0.148 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchh-------------------------------------------H
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQ-------------------------------------------K 88 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~-------------------------------------------~ 88 (340)
..+...||..|.+.|++++|.+.+.++++.....++ .
T Consensus 55 ~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 134 (434)
T 4b4t_Q 55 ETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLK 134 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHH
Confidence 345778899999999999999888876654321100 1
Q ss_pred HHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhhHHHHHhccccCCHHHHHHHHHhcc
Q 019472 89 MDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSI 156 (340)
Q Consensus 89 i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~ 156 (340)
......+..+....|++..+...+.++........+......+....|..+...++|..|-..+-.+.
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 12333445556666777777777776665554444444455566666777777888877777665553
No 93
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=95.00 E-value=0.15 Score=41.30 Aligned_cols=98 Identities=14% Similarity=0.078 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHH-HHHhcCH--HHHHhHHHHHHHHHhcCCChhhh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQL-GFFYMDF--DLISKSIDKAKSLFEEGGDWERK 128 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~-~i~~~~~--~~~~~~i~ka~~~l~~~~~~~~~ 128 (340)
..+...+|..|...|++++|.+.|.+..+..... .+.+..+..+ ....+++ ..+...+.++-.. +|..
T Consensus 44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~-----~p~~- 114 (177)
T 2e2e_A 44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN---AELYAALATVLYYQASQHMTAQTRAMIDKALAL-----DSNE- 114 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC---HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH-----CTTC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh-----CCCc-
Confidence 3567889999999999999999999988765332 3445556666 5677888 8888888877654 1111
Q ss_pred hHhhHHHHHhccccCCHHHHHHHHHhcccc
Q 019472 129 NRLKVYEGLYCMSTRNFKKAASLFLDSIST 158 (340)
Q Consensus 129 ~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~~ 158 (340)
......-|..+...++|..|...|-.++..
T Consensus 115 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 115 ITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 123445677788899999999999887653
No 94
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=94.95 E-value=0.035 Score=40.25 Aligned_cols=42 Identities=12% Similarity=0.229 Sum_probs=38.8
Q ss_pred HHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCcc
Q 019472 253 VVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKL 294 (340)
Q Consensus 253 ~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l 294 (340)
..|.+++.-...|+++.||+.||+|++.|.+.|..|...|.+
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l 46 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKA 46 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 446778888999999999999999999999999999999987
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=94.95 E-value=0.2 Score=45.95 Aligned_cols=101 Identities=15% Similarity=0.151 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCC--h-hhhhHh
Q 019472 55 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGD--W-ERKNRL 131 (340)
Q Consensus 55 ~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~--~-~~~~~l 131 (340)
..-+|..|...|++++|++++.+..+...+ ...++.....+++.+..|+.+.+.+.+.+....- .| | +-...+
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~-~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~---~d~~~~~d~~l~ 178 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDEA-EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI---EDTVSGDNEMIL 178 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSCS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCC-cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---ccccccchHHHH
Confidence 467899999999999999999987543321 3578999999999999999999999998876641 10 1 234556
Q ss_pred hHHHHHhccccC--CHHHHHHHHHhccccC
Q 019472 132 KVYEGLYCMSTR--NFKKAASLFLDSISTF 159 (340)
Q Consensus 132 ~~~~gl~~l~~r--~y~~Aa~~F~e~~~~f 159 (340)
....|.+.+..+ ++..|...|=+....|
T Consensus 179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~~ 208 (310)
T 3mv2_B 179 NLAESYIKFATNKETATSNFYYYEELSQTF 208 (310)
T ss_dssp HHHHHHHHHHHTCSTTTHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhC
Confidence 677787777666 8999988887765554
No 96
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=94.90 E-value=0.25 Score=37.83 Aligned_cols=94 Identities=10% Similarity=-0.026 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhhHH
Q 019472 55 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVY 134 (340)
Q Consensus 55 ~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~~~ 134 (340)
.+.+|..+.+.|++++|.+.+.++.+.... -.+....+-.+....|++..+...+.++-.. +|+. ......
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~-~~~~~~ 90 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE---REEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKD-IAVHAA 90 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-HHHHHH
Confidence 467899999999999999999988765422 2355666677778889999999988887664 2221 123355
Q ss_pred HHHhccccCCHHHHHHHHHhccc
Q 019472 135 EGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 135 ~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
-|..+...|+|.+|...|-.++.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 66777888999999988877643
No 97
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=94.88 E-value=0.86 Score=43.32 Aligned_cols=96 Identities=11% Similarity=0.029 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
..++..+|..|...|++++|.+.+.++.+..... .+.+..+..+....|++..+...+.++-..-. .++ ..
T Consensus 310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~ 380 (537)
T 3fp2_A 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN---VYPYIQLACLLYKQGKFTESEAFFNETKLKFP--TLP----EV 380 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCT----HH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCh----HH
Confidence 4568899999999999999999999988755322 25566777888889999999999988776421 122 23
Q ss_pred hHHHHHhccccCCHHHHHHHHHhcc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSI 156 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~ 156 (340)
...-|..+...++|.+|...|-.+.
T Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 381 PTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3455888889999999998888765
No 98
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=94.83 E-value=0.35 Score=44.05 Aligned_cols=106 Identities=7% Similarity=-0.043 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchh--HHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhH
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQ--KMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNR 130 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~--~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~ 130 (340)
....-+|..+...|++++|.+.+.+..+.....+. .......+-.+....|++..+...+.++.......+++.....
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 34667899999999999999999998865532221 3334555566777889999999999999887666666655556
Q ss_pred hhHHHHHhccccCCHHHHHHHHHhcccc
Q 019472 131 LKVYEGLYCMSTRNFKKAASLFLDSIST 158 (340)
Q Consensus 131 l~~~~gl~~l~~r~y~~Aa~~F~e~~~~ 158 (340)
.....|..+...|+|.+|...|-++...
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~ 122 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQL 122 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6677788899999999999998877643
No 99
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=94.81 E-value=0.091 Score=49.59 Aligned_cols=103 Identities=16% Similarity=0.038 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc------chhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChh-
Q 019472 54 AHLAKSLFYIQIGDKEKALEQLKVTESKTVA------VGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWE- 126 (340)
Q Consensus 54 ~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~------~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~- 126 (340)
.+..||.+|...|++++|++.|.+..+.... ....+..+.++..++...|++..+..++.|+..+.....++.
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 3667999999999999999999997764321 112344555677788889999999999999988654422221
Q ss_pred -hhhHhhHHHHH--hccccCCHHHHHHHHHhcc
Q 019472 127 -RKNRLKVYEGL--YCMSTRNFKKAASLFLDSI 156 (340)
Q Consensus 127 -~~~~l~~~~gl--~~l~~r~y~~Aa~~F~e~~ 156 (340)
..+.+....|. ..+..++|.+|..+|-.++
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal 165 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKAL 165 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 12333444454 4456778999999887765
No 100
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=94.80 E-value=1.5 Score=36.65 Aligned_cols=106 Identities=11% Similarity=-0.014 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc----hhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhc------
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV----GQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE------ 121 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~----~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~------ 121 (340)
..++..+|..|...|++++|.+.+.+..+..... ......+..+..+....|++..+...+.++-..-..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 117 (258)
T 3uq3_A 38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTK 117 (258)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHH
Confidence 3567889999999999999999999988655322 112567778888888999999999988888763110
Q ss_pred ---------------CCChhhhhHhhHHHHHhccccCCHHHHHHHHHhcccc
Q 019472 122 ---------------GGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 158 (340)
Q Consensus 122 ---------------~~~~~~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~~ 158 (340)
..+|. ........|..+...++|.+|...|-.+...
T Consensus 118 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 168 (258)
T 3uq3_A 118 LRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR 168 (258)
T ss_dssp HHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 01222 2334456677788899999999988887643
No 101
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=94.76 E-value=0.23 Score=39.39 Aligned_cols=96 Identities=14% Similarity=0.042 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
..+...+|..|...|++++|.+.+.++.+.... .......+..+....|++..+...+.++-.... .+ ...
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~ 146 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI---NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP--NE----GKV 146 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----HHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH---hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc--cc----hHH
Confidence 345778999999999999999999998866432 235566777888889999999999888766421 11 223
Q ss_pred hHHHHHhccccCCHHHHHHHHHhcc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSI 156 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~ 156 (340)
...-|..+...++|.+|...|-.+.
T Consensus 147 ~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 147 HRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555667778899999998887664
No 102
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=94.71 E-value=0.87 Score=41.38 Aligned_cols=107 Identities=12% Similarity=-0.036 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccch---hHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCCh--h
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVG---QKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDW--E 126 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~---~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~--~ 126 (340)
..+...+|..|...|++++|.+.+.+..+.....+ ........+..+....|++..+...+.++-......+++ .
T Consensus 53 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 132 (373)
T 1hz4_A 53 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP 132 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCc
Confidence 34577889999999999999999998886553322 223344556677788899999999999988766543333 2
Q ss_pred hhhHhhHHHHHhccccCCHHHHHHHHHhcccc
Q 019472 127 RKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 158 (340)
Q Consensus 127 ~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~~ 158 (340)
........-|..+...++|.+|...|-++...
T Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 164 (373)
T 1hz4_A 133 MHEFLVRIRAQLLWAWARLDEAEASARSGIEV 164 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 23334445566778889999999888877543
No 103
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=94.67 E-value=0.22 Score=42.70 Aligned_cols=98 Identities=13% Similarity=0.024 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhH
Q 019472 51 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNR 130 (340)
Q Consensus 51 ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~ 130 (340)
...++..+|..|...|++++|.+.+.+..+.... ..+.+..+..+....|++..+...+.++-..-. .+ ..
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~----~~ 112 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPD---MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP--TY----NY 112 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----TH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc--cc----cH
Confidence 4566888999999999999999999998865432 235566777788889999999999988776421 11 22
Q ss_pred hhHHHHHhccccCCHHHHHHHHHhccc
Q 019472 131 LKVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 131 l~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
....-|..+...++|.+|...|-.+..
T Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 113 AHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334556677889999999998887754
No 104
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=94.64 E-value=0.048 Score=40.37 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=40.2
Q ss_pred HHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceE
Q 019472 253 VVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCK 297 (340)
Q Consensus 253 ~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~ak 297 (340)
..|.+++.-...|+++.||+.||+|++.|.+.|..|...|.|.=.
T Consensus 5 ~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 346778888999999999999999999999999999999988543
No 105
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=94.56 E-value=2.2 Score=39.40 Aligned_cols=98 Identities=12% Similarity=0.124 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh---
Q 019472 55 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL--- 131 (340)
Q Consensus 55 ~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l--- 131 (340)
...+|..|.+.|++++|.+.+.++.+.... ..+.+..+..+....|++..+...+.++...- ..++.....+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~ 254 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKND---NTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHH
Confidence 444555555555555555555554433211 12344455556666677776666666654321 0111111111
Q ss_pred -----hHHHHHhccccCCHHHHHHHHHhccc
Q 019472 132 -----KVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 132 -----~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
....|..+...++|.+|...|-.+..
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~ 285 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMK 285 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11126667778888888888877654
No 106
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=94.45 E-value=0.21 Score=42.03 Aligned_cols=97 Identities=14% Similarity=0.073 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
..+...+|..|...|++++|.+.+.++.+..... .+....+..+....|++..+...+.++-..-. .+ ...
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~ 161 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN---GDLFYMLGTVLVKLEQPKLALPYLQRAVELNE--ND----TEA 161 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT--TC----HHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--cc----HHH
Confidence 3457889999999999999999999988765332 34566777888899999999999888765421 11 223
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
....|..+...++|.+|...|-.+..
T Consensus 162 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 187 (243)
T 2q7f_A 162 RFQFGMCLANEGMLDEALSQFAAVTE 187 (243)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45567777889999999998887754
No 107
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=94.42 E-value=0.26 Score=41.78 Aligned_cols=92 Identities=18% Similarity=0.097 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhh
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 132 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~ 132 (340)
.++..+|..|...|++++|.+.|.+..+.. .-.+....+..+....|+++.+...+.++-.. +|+. ....
T Consensus 119 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~P~~-~~~~ 188 (217)
T 2pl2_A 119 PLHLQRGLVYALLGERDKAEASLKQALALE----DTPEIRSALAELYLSMGRLDEALAQYAKALEQ-----APKD-LDLR 188 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTC-HHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcc----cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-hHHH
Confidence 456788899999999999999998877654 12355566777778888998888888877653 1211 1223
Q ss_pred HHHHHhccccCCHHHHHHHHHh
Q 019472 133 VYEGLYCMSTRNFKKAASLFLD 154 (340)
Q Consensus 133 ~~~gl~~l~~r~y~~Aa~~F~e 154 (340)
..-|..+...|+|.+|...|-.
T Consensus 189 ~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 189 VRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHTC-------------
T ss_pred HHHHHHHHHccCHHHHHHHHHH
Confidence 3446677788888888776654
No 108
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=94.39 E-value=0.48 Score=44.04 Aligned_cols=104 Identities=13% Similarity=0.008 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHH---------HhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcC
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKM---------DLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG 122 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i---------~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~ 122 (340)
..+...+|..|...|++++|.+.+.++.+......... +..+....+....|++..+...+.++-..- .
T Consensus 211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p 288 (450)
T 2y4t_A 211 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--P 288 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C
Confidence 34578899999999999999999999886543322211 222444677788899999999888876632 2
Q ss_pred CChhhhhHhhHHHHHhccccCCHHHHHHHHHhccc
Q 019472 123 GDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 123 ~~~~~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
.++.........-|..+...++|.+|...|-.+..
T Consensus 289 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23444455666778888899999999998887653
No 109
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=94.35 E-value=0.29 Score=39.67 Aligned_cols=97 Identities=20% Similarity=0.125 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
..++..+|..|.+.|++++|.+.+.+........ .........+....+++..+.....++...-. .++ ..
T Consensus 39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~--~~~----~~ 109 (184)
T 3vtx_A 39 VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS---AEAYYILGSANFMIDEKQAAIDALQRAIALNT--VYA----DA 109 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH----HH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--cch----HH
Confidence 4568899999999999999999999887655332 23444555667778999999988888766421 122 23
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
....|..+...++|.+|...|-.+..
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~~l~ 135 (184)
T 3vtx_A 110 YYKLGLVYDSMGEHDKAIEAYEKTIS 135 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 34567888899999999998877653
No 110
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=94.27 E-value=0.38 Score=46.97 Aligned_cols=104 Identities=13% Similarity=-0.029 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh---hccchh--HHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhc--C-
Q 019472 51 VREAHLAKSLFYIQIGDKEKALEQLKVTESK---TVAVGQ--KMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE--G- 122 (340)
Q Consensus 51 ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~---~~~~~~--~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~--~- 122 (340)
+..++..||..|...|+|++|..++.+..+- .-.++| ....+.++..++...|+++.+...+.+|-.+.+. |
T Consensus 350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~ 429 (490)
T 3n71_A 350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGP 429 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4666889999999999999999999987743 223333 4566777788888899999999999999998765 2
Q ss_pred CChhhhhHhhHHHHHhccccCCHHHHHHHHHhc
Q 019472 123 GDWERKNRLKVYEGLYCMSTRNFKKAASLFLDS 155 (340)
Q Consensus 123 ~~~~~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~ 155 (340)
.+|.. ..+...-+-.++..+.|+.|-..|..+
T Consensus 430 ~Hp~~-~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 430 SHPIT-KDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp TSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23433 233344445556677787777766654
No 111
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=94.26 E-value=0.42 Score=46.39 Aligned_cols=97 Identities=11% Similarity=0.085 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
..+...++..|.+.|++++|.+.|.++.+.... ....+..+..++...|+++.+...+.++...- ..++. .
T Consensus 407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~----~ 477 (597)
T 2xpi_A 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG---THLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYDPL----L 477 (597)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT---CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCCHH----H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChH----H
Confidence 346778899999999999999999888765422 12445566677778888888888888876531 12232 2
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
...-|..+...|+|.+|...|-++..
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34456666778888888888877643
No 112
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=94.18 E-value=0.27 Score=36.98 Aligned_cols=67 Identities=12% Similarity=0.038 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 019472 49 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 118 (340)
Q Consensus 49 ~~ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 118 (340)
..-..++..+|..|...|++++|.+.+.++.+..... .+....+..+....|++..+...+.++-..
T Consensus 24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH---QALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3345678899999999999999999999988765332 456666777778889999999888887654
No 113
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=94.15 E-value=0.55 Score=34.92 Aligned_cols=66 Identities=8% Similarity=-0.150 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFE 120 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~ 120 (340)
..++..+|..|...|++++|.+.+.+..+.... ..+.+..+..+....|++..+...+.++-..-.
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT---YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 346788999999999999999999998865432 234566777888889999999999998877543
No 114
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=94.13 E-value=0.5 Score=44.54 Aligned_cols=95 Identities=9% Similarity=-0.104 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
..++..+|..+++.|++++|.+.|.++.+... + ...+..+..+.+..|++..+...+.++-.. +|.. ...
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~-~~~ 75 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE--D--PVFYSNLSACYVSVGDLKKVVEMSTKALEL-----KPDY-SKV 75 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC--C--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CSCC-HHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc--c--HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc-----ChHH-HHH
Confidence 45688899999999999999999999987653 2 456777888899999999999999887663 1211 123
Q ss_pred hHHHHHhccccCCHHHHHHHHHhcc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSI 156 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~ 156 (340)
...-|..+...++|.+|...|-.+.
T Consensus 76 ~~~l~~~~~~~g~~~~A~~~~~~~~ 100 (514)
T 2gw1_A 76 LLRRASANEGLGKFADAMFDLSVLS 100 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3456777888999999998887764
No 115
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=94.08 E-value=0.77 Score=41.46 Aligned_cols=120 Identities=9% Similarity=0.004 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
....+.+|..+.+.|+|++|.+.|..+... .+++. ..+...-+++..++|..+...+.++.. ..+|...+..
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~----~~d~~~~~~a 173 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHL--VAWMKAVVYGAAERWTDVIDQVKSAGK----WPDKFLAGAA 173 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHH--HHHHHHHHHHHTTCHHHHHHHHTTGGG----CSCHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchH--HHHHHHHHHHHcCCHHHHHHHHHHhhc----cCCcccHHHH
Confidence 344667899999999999999999776542 24444 556666688899999999988874422 2255555678
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccccCCcCccCCHhHHHHHHHHHHhhh
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIIS 181 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~~~f~~~e~~~~~~~~~Y~~L~al~s 181 (340)
..+-|..+...|+|.+|..+|-.+...-. +-.-..+...+.++|=.-.
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~--~P~~~~da~~~~glaL~~l 221 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPA--GEACARAIAWYLAMARRSQ 221 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTT--TTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCC--CccccHHHHHHHHHHHHHc
Confidence 89999999999999999999988753210 0111445566666554433
No 116
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=94.08 E-value=2.3 Score=35.68 Aligned_cols=95 Identities=7% Similarity=-0.037 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhhH
Q 019472 54 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 133 (340)
Q Consensus 54 ~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~~ 133 (340)
++..+|..+.+.|++++|...|.+..+.... -.+....+-.+....|++..+...+.++-.. +|+. .....
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~P~~-~~a~~ 77 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQ---DPEALYWLARTQLKLGLVNPALENGKTLVAR-----TPRY-LGGYM 77 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc-HHHHH
Confidence 5678999999999999999999998765422 2456667777888899999999988887664 1221 11223
Q ss_pred HHHHhcccc-----------CCHHHHHHHHHhccc
Q 019472 134 YEGLYCMST-----------RNFKKAASLFLDSIS 157 (340)
Q Consensus 134 ~~gl~~l~~-----------r~y~~Aa~~F~e~~~ 157 (340)
.-|..+... |+|.+|...|-.+..
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 112 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER 112 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH
Confidence 345555666 899999988887754
No 117
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=94.04 E-value=2.8 Score=36.51 Aligned_cols=97 Identities=19% Similarity=0.100 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhC-CHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 53 EAHLAKSLFYIQIG-DKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 53 ~~~~~La~~~~~~G-d~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
.++..+|..+...| ++++|.+.+.+..+.... ..+.+..+..+....|++..+...+.++-..... + ...
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~----~~~ 161 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT---YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG--C----HLP 161 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT---CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT--C----SHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc--c----HHH
Confidence 34667788888888 888888888877654422 1244556667777778888888777776654211 1 122
Q ss_pred hHHHHHhccccCCHHHHHHHHHhcccc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSIST 158 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~~~ 158 (340)
...-|..+...++|.+|...|-.+...
T Consensus 162 ~~~l~~~~~~~~~~~~A~~~~~~al~~ 188 (330)
T 3hym_B 162 MLYIGLEYGLTNNSKLAERFFSQALSI 188 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 334566777788888888888777543
No 118
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=94.00 E-value=0.45 Score=33.19 Aligned_cols=64 Identities=19% Similarity=0.107 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 118 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 118 (340)
..+...+|..|...|++++|.+.+.+..+..... ......+..+....+++..+...+.++-..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3557789999999999999999999988654322 345667777788889999999888887664
No 119
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.96 E-value=0.32 Score=36.40 Aligned_cols=64 Identities=11% Similarity=-0.077 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhcc----chhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 019472 55 HLAKSLFYIQIGDKEKALEQLKVTESKTVA----VGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 118 (340)
Q Consensus 55 ~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~----~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 118 (340)
.+.+|.++++.|+|..|...|....+.... .....+....+..+....|++..+.....++-..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 468999999999999999999998865422 1235577777778888899999999988887653
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=93.89 E-value=0.17 Score=42.01 Aligned_cols=93 Identities=9% Similarity=0.062 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhhH
Q 019472 54 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 133 (340)
Q Consensus 54 ~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~~ 133 (340)
.++.+|..++..|++++|.+.|.++.+. ....+..+..+....|++..+...+.++-..- |. ......
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~-~~~~~~ 75 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDP------HSRICFNIGCMYTILKNMTEAEKAFTRSINRD-----KH-LAVAYF 75 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT-CHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cc-chHHHH
Confidence 3678999999999999999999877422 23566777788888999999999998876642 11 122345
Q ss_pred HHHHhccccCCHHHHHHHHHhcccc
Q 019472 134 YEGLYCMSTRNFKKAASLFLDSIST 158 (340)
Q Consensus 134 ~~gl~~l~~r~y~~Aa~~F~e~~~~ 158 (340)
.-|..+...++|.+|...|-.+...
T Consensus 76 ~lg~~~~~~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 76 QRGMLYYQTEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHh
Confidence 5677888899999999998887653
No 121
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=93.85 E-value=0.44 Score=43.12 Aligned_cols=94 Identities=12% Similarity=0.086 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhhH
Q 019472 54 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 133 (340)
Q Consensus 54 ~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~~ 133 (340)
++..+|..|...|++++|.+.+.+..+..... ...+..+..+....|++..+...+.++-.. +|.. .....
T Consensus 215 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~-~~~~~ 285 (365)
T 4eqf_A 215 LQTGLGVLFHLSGEFNRAIDAFNAALTVRPED---YSLWNRLGATLANGDRSEEAVEAYTRALEI-----QPGF-IRSRY 285 (365)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCc-hHHHH
Confidence 45667777777777777777777766544221 234455556666677777777777666543 1111 22233
Q ss_pred HHHHhccccCCHHHHHHHHHhcc
Q 019472 134 YEGLYCMSTRNFKKAASLFLDSI 156 (340)
Q Consensus 134 ~~gl~~l~~r~y~~Aa~~F~e~~ 156 (340)
.-|..+...++|.+|...|-.+.
T Consensus 286 ~l~~~~~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 286 NLGISCINLGAYREAVSNFLTAL 308 (365)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44555666677777777766654
No 122
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=93.85 E-value=0.45 Score=41.73 Aligned_cols=97 Identities=10% Similarity=-0.028 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
..+...+|..|...|++++|.+.+.+..+.... ..+....+..+....|++..+...+.++-..-. .++..
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~---- 242 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPD---DAQLWNKLGATLANGNRPQEALDAYNRALDINP--GYVRV---- 242 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHH----
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHH----
Confidence 456788999999999999999999998866532 235566777888889999999999888765421 12231
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
...-|..+...++|.+|...|-.+..
T Consensus 243 ~~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 243 MYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 23456777888999999988877653
No 123
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=93.83 E-value=0.11 Score=37.38 Aligned_cols=45 Identities=16% Similarity=0.218 Sum_probs=38.6
Q ss_pred HHHHHHHhhhhh------ccccHHHHHHHhCCChHHHHHHHHHHhhCCccc
Q 019472 251 RTVVYSQFLESY------KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH 295 (340)
Q Consensus 251 r~~~l~q~i~pY------s~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~ 295 (340)
|.+.+.+|+..+ -.++...||+.||+|...|.+.|..|-..|.|.
T Consensus 5 r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~ 55 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLE 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 445566677666 779999999999999999999999999999883
No 124
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=93.67 E-value=0.17 Score=38.26 Aligned_cols=89 Identities=9% Similarity=0.079 Sum_probs=63.5
Q ss_pred HhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhhHHHHHhccccC
Q 019472 64 QIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTR 143 (340)
Q Consensus 64 ~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~~~~gl~~l~~r 143 (340)
..|++++|.+.|.++.+...+.........++-.+....|++..+...+.++-..- |+. ......-|..+...+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~-~~~~~~l~~~~~~~g 75 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-----PNH-QALRVFYAMVLYNLG 75 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-HHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCc-hHHHHHHHHHHHHcC
Confidence 46899999999999887532223455777888888899999999999999876641 221 234456788889999
Q ss_pred CHHHHHHHHHhcccc
Q 019472 144 NFKKAASLFLDSIST 158 (340)
Q Consensus 144 ~y~~Aa~~F~e~~~~ 158 (340)
+|.+|...|-.++..
T Consensus 76 ~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 76 RYEQGVELLLKIIAE 90 (117)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999998887543
No 125
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=93.64 E-value=0.14 Score=40.88 Aligned_cols=92 Identities=18% Similarity=0.168 Sum_probs=66.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhhHHHH
Q 019472 57 AKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEG 136 (340)
Q Consensus 57 ~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~~~~g 136 (340)
.||.++.+.|++++|++.+.+....- ...-...+.+-+++...|+++.+...+.++-.. +|. -......-|
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~---p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~-----~p~-~~~a~~~lg 72 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSP---RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV-----QER-DPKAHRFLG 72 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSH---HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT-CHHHHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC-CHHHHHHHH
Confidence 47899999999999999988765432 233456678888999999999999999987664 121 122345567
Q ss_pred HhccccCCHHHHHHHHHhccc
Q 019472 137 LYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 137 l~~l~~r~y~~Aa~~F~e~~~ 157 (340)
..+...++|.+|...|-.++.
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 73 LLYELEENTDKAVECYRRSVE 93 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCchHHHHHHHHHHHH
Confidence 788889999999999988754
No 126
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=93.48 E-value=0.31 Score=44.74 Aligned_cols=100 Identities=8% Similarity=-0.075 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccch--------------hHHHhHHHHHHHHHHhcCHHHHHhHHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVG--------------QKMDLVFYTLQLGFFYMDFDLISKSIDKAKS 117 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~--------------~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~ 117 (340)
...+..+|..+++.|+|.+|.+.|.+......... .+...++++..+.+..++|..+...+.++-.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34478899999999999999999999876543211 0113667777888888999999999988766
Q ss_pred HHhcCCChhhhhHhhHHHHHhccccCCHHHHHHHHHhccc
Q 019472 118 LFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 118 ~l~~~~~~~~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
. +|. ..+.....|..+...++|.+|...|-.++.
T Consensus 259 ~-----~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 259 E-----EEK-NPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp H-----CTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred h-----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 121 123445667888899999999999988754
No 127
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=93.43 E-value=0.43 Score=35.42 Aligned_cols=67 Identities=12% Similarity=-0.067 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc-h---hHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV-G---QKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 118 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~-~---~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 118 (340)
..+...+|..|...|++++|.+.+.+..+..... . .....+..+..+....|++..+...+.++-..
T Consensus 38 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 38 MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3457889999999999999999999988655321 1 11566777788888999999999998887663
No 128
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=93.42 E-value=0.44 Score=48.90 Aligned_cols=95 Identities=7% Similarity=-0.114 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhh
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 132 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~ 132 (340)
.++..||..|.+.|++++|.++|.+..+.... -.+.+.++-.+....|++..+...+.+|-.+ +|+. ....
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~---~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-----~P~~-~~a~ 80 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPE---FAAAHSNLASVLQQQGKLQEALMHYKEAIRI-----SPTF-ADAY 80 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-HHHH
Confidence 34555666666666666666666665543311 1234444445555556666666666555442 1110 1122
Q ss_pred HHHHHhccccCCHHHHHHHHHhcc
Q 019472 133 VYEGLYCMSTRNFKKAASLFLDSI 156 (340)
Q Consensus 133 ~~~gl~~l~~r~y~~Aa~~F~e~~ 156 (340)
..-|..+...++|.+|...|-.++
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl 104 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAI 104 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 233445555566666665555543
No 129
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=93.37 E-value=4.2 Score=36.40 Aligned_cols=101 Identities=6% Similarity=-0.092 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhc-CCChhh---hh
Q 019472 54 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE-GGDWER---KN 129 (340)
Q Consensus 54 ~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~-~~~~~~---~~ 129 (340)
++..+|..|...|++++|.+.|.+..+.... ..+.+..+..+....|++..+...+.++-..-.. ...+.. ..
T Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 177 (365)
T 4eqf_A 101 AWQFLGITQAENENEQAAIVALQRCLELQPN---NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSP 177 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC--------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccch
Confidence 4555666666666666666666655543311 1234444555555556666666555555442110 000000 01
Q ss_pred HhhHHHHHhccccCCHHHHHHHHHhccc
Q 019472 130 RLKVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 130 ~l~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
.+...-|..+...++|.+|...|-.+..
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~al~ 205 (365)
T 4eqf_A 178 GLTRRMSKSPVDSSVLEGVKELYLEAAH 205 (365)
T ss_dssp -----------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 1111224455556666666666655543
No 130
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=93.25 E-value=0.54 Score=41.24 Aligned_cols=93 Identities=12% Similarity=0.046 Sum_probs=66.0
Q ss_pred HHH-HH-HHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhhH
Q 019472 56 LAK-SL-FYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 133 (340)
Q Consensus 56 ~~L-a~-~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~~ 133 (340)
..+ +. .+...|++++|.+.+.++.+.... .......+..+....|++..+...+.++-..-. .+ .....
T Consensus 140 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~~ 210 (327)
T 3cv0_A 140 NVQSEDFFFAAPNEYRECRTLLHAALEMNPN---DAQLHASLGVLYNLSNNYDSAAANLRRAVELRP--DD----AQLWN 210 (327)
T ss_dssp ------CCTTSHHHHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----HHHHH
T ss_pred HHHHHhHHHHHcccHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--Cc----HHHHH
Confidence 355 33 488999999999999998876533 235667777888889999999999998766421 11 12334
Q ss_pred HHHHhccccCCHHHHHHHHHhccc
Q 019472 134 YEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 134 ~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
.-|..+...++|.+|...|-.+..
T Consensus 211 ~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 211 KLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 556777789999999988887653
No 131
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=93.24 E-value=4.2 Score=36.02 Aligned_cols=91 Identities=16% Similarity=0.208 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhhH
Q 019472 54 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 133 (340)
Q Consensus 54 ~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~~ 133 (340)
.++.+|..|...|++++|++.+.+ ....+......++....|+++.+...+.++... +|+. .....
T Consensus 103 ~~~~la~~~~~~g~~~~Al~~l~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-----~p~~-~~~~l 168 (291)
T 3mkr_A 103 FLLMAASIYFYDQNPDAALRTLHQ--------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-----DEDA-TLTQL 168 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTT--------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CcCc-HHHHH
Confidence 355666666666666666666654 122445556666666677777777766665543 1111 01122
Q ss_pred HHHHhc--cccCCHHHHHHHHHhcccc
Q 019472 134 YEGLYC--MSTRNFKKAASLFLDSIST 158 (340)
Q Consensus 134 ~~gl~~--l~~r~y~~Aa~~F~e~~~~ 158 (340)
..|... ...++|.+|...|-++...
T Consensus 169 ~~a~~~l~~~~~~~~eA~~~~~~~l~~ 195 (291)
T 3mkr_A 169 ATAWVSLAAGGEKLQDAYYIFQEMADK 195 (291)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 222222 2446677777777666543
No 132
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=93.16 E-value=1.2 Score=34.24 Aligned_cols=78 Identities=12% Similarity=-0.078 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc----hhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV----GQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWER 127 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~----~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~ 127 (340)
..++..+|..|.+.|++++|++.+.+..+..... ......+..+-.+....+++..+.....++-. ...+|+.
T Consensus 42 ~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~---~~~~~~~ 118 (127)
T 4gcn_A 42 ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS---EFRDPEL 118 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCCHHH
T ss_pred HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCcCHHH
Confidence 4467889999999999999999999987644221 12234455555666778999999988888644 2346665
Q ss_pred hhHhh
Q 019472 128 KNRLK 132 (340)
Q Consensus 128 ~~~l~ 132 (340)
..+++
T Consensus 119 ~~~l~ 123 (127)
T 4gcn_A 119 VKKVK 123 (127)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 133
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=93.04 E-value=0.31 Score=35.20 Aligned_cols=64 Identities=11% Similarity=-0.082 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHh-cCHHHHHhHHHHHHH
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFY-MDFDLISKSIDKAKS 117 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~-~~~~~~~~~i~ka~~ 117 (340)
.+...+|..|...|++++|.+.+.+..+.... ....+.+..+..+.... |++..+...+.++-.
T Consensus 41 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 41 KYWLMKGKALYNLERYEEAVDCYNYVINVIED-EYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 45778999999999999999999998876533 11345667778888889 999999888887654
No 134
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=93.04 E-value=0.53 Score=42.32 Aligned_cols=97 Identities=13% Similarity=0.074 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
...+..+|..|...|++++|.+.+.+..+.... ....+..+..+....|++..+...+.++-..- |. ....
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~-~~~~ 287 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN---DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-----PG-YIRS 287 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT-CHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC-cHHH
Confidence 456788999999999999999999998875432 23566777788888999999999999886641 11 1234
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
...-|..+...++|.+|...|-.+..
T Consensus 288 ~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 288 RYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56678888899999999998887653
No 135
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=92.90 E-value=0.57 Score=45.44 Aligned_cols=102 Identities=12% Similarity=-0.046 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHh-cCCChhhhhHh
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFE-EGGDWERKNRL 131 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~-~~~~~~~~~~l 131 (340)
.+...+|..|.+.|++++|.+.+.++.+........ +..+..+....|+++.+...+.++..... .+.+|+.....
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~ 518 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL---LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence 457778999999999999999999988765332222 34566777788999999999988877543 25666654445
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
...-|..+...|+|.+|...|-.+..
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 55666677788999999888877653
No 136
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=92.83 E-value=1.3 Score=37.02 Aligned_cols=95 Identities=9% Similarity=0.007 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHH----------------HHHHHHHhcCHHHHHhHHHHHHH
Q 019472 54 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFY----------------TLQLGFFYMDFDLISKSIDKAKS 117 (340)
Q Consensus 54 ~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~----------------~i~~~i~~~~~~~~~~~i~ka~~ 117 (340)
..+..|..+++.|++++|.+.+.+..+.... ..+.+.. +-.+....|++..+...+.++-.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNID---RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH---HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999998764321 1223333 66777888999999998888766
Q ss_pred HHhcCCChhhhhHhhHHHHHhccccCCHHHHHHHHHhccc
Q 019472 118 LFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 118 ~l~~~~~~~~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
. +|.. ......-|..+...|+|.+|...|-.++.
T Consensus 83 ~-----~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 83 K-----APNN-VDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp H-----CTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred H-----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 2221 12334557778889999999999988754
No 137
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=92.79 E-value=3.8 Score=36.31 Aligned_cols=99 Identities=9% Similarity=0.009 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhH-HHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQK-MDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNR 130 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~-i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~ 130 (340)
..++..+|.+|.+.|++++|.+.+.++.+.. ++.. ......++.+....|++..+...+.++-.. ...+ ..
T Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~----~~ 201 (291)
T 3mkr_A 130 LECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPT----LL 201 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCC----HH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCc----HH
Confidence 3467889999999999999999999988654 2222 222233444444457788888877776553 1112 23
Q ss_pred hhHHHHHhccccCCHHHHHHHHHhcccc
Q 019472 131 LKVYEGLYCMSTRNFKKAASLFLDSIST 158 (340)
Q Consensus 131 l~~~~gl~~l~~r~y~~Aa~~F~e~~~~ 158 (340)
+....|..++..|+|.+|...|-.++..
T Consensus 202 ~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 202 LLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455677889999999999999988653
No 138
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=92.69 E-value=5.2 Score=35.57 Aligned_cols=63 Identities=6% Similarity=-0.227 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS 117 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~ 117 (340)
..++..+|..|...|++++|.+.+.++.+.... ..+....+..+....|++..+...+.++-.
T Consensus 98 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 98 MEAWQYLGTTQAENEQELLAISALRRCLELKPD---NQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345777888888888888888888887765422 234556666777777888888777776654
No 139
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=92.64 E-value=3.5 Score=33.51 Aligned_cols=100 Identities=14% Similarity=0.011 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHh-cCHHHHHhHHHHHHHHHhcCCChhhhhH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFY-MDFDLISKSIDKAKSLFEEGGDWERKNR 130 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~-~~~~~~~~~i~ka~~~l~~~~~~~~~~~ 130 (340)
..++..+|..|...|++++|.+.+.+..+..... .+.+..+..+.... |++..+...+.++-. ...+|. ...
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~-~~~ 114 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS---AEINNNYGWFLCGRLNRPAESMAYFDKALA---DPTYPT-PYI 114 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT---STTCSC-HHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc---CcCCcc-hHH
Confidence 3467889999999999999999999988655322 34566777888889 999999998888766 112222 233
Q ss_pred hhHHHHHhccccCCHHHHHHHHHhcccc
Q 019472 131 LKVYEGLYCMSTRNFKKAASLFLDSIST 158 (340)
Q Consensus 131 l~~~~gl~~l~~r~y~~Aa~~F~e~~~~ 158 (340)
.....|..+...++|.+|...|-.+...
T Consensus 115 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 142 (225)
T 2vq2_A 115 ANLNKGICSAKQGQFGLAEAYLKRSLAA 142 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455677788899999999998887543
No 140
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=92.35 E-value=0.97 Score=44.14 Aligned_cols=61 Identities=10% Similarity=-0.020 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHH
Q 019472 54 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS 117 (340)
Q Consensus 54 ~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~ 117 (340)
++..+|..|...|++++|.+.|.+..+.... ..+.+..+..+....|+++.+...+.++-.
T Consensus 25 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 85 (568)
T 2vsy_A 25 AWLMLADAELGMGDTTAGEMAVQRGLALHPG---HPEAVARLGRVRWTQQRHAEAAVLLQQASD 85 (568)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3445555555555555555555555443211 123334444444555555555555555443
No 141
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=92.30 E-value=1.4 Score=42.93 Aligned_cols=102 Identities=9% Similarity=-0.003 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhh---ccchh--HHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcC---CChh
Q 019472 55 HLAKSLFYIQIGDKEKALEQLKVTESKT---VAVGQ--KMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG---GDWE 126 (340)
Q Consensus 55 ~~~La~~~~~~Gd~~~A~~~l~~~~~~~---~~~~~--~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~---~~~~ 126 (340)
....+.-+...|+|++|...+.+.++.. -.++| .+...-++..++...|+|+.+..+..++-...++. .+|+
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 3455667788999999999999877543 23333 56777788888999999999999999998876552 3344
Q ss_pred hhhHhhHHHHHhccccCCHHHHHHHHHhccc
Q 019472 127 RKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 127 ~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
.-. ...--|..+..+|+|.+|..+|-.++.
T Consensus 392 ~a~-~l~nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 392 LGM-AVMRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHH-HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 322 222345567789999999998887653
No 142
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=92.30 E-value=0.94 Score=34.06 Aligned_cols=65 Identities=6% Similarity=-0.013 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLF 119 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l 119 (340)
..++..+|..|...|++++|.+.+.+..+.... ....+..+-.+....|++..+...+.++-..-
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 38 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN---FVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 356888999999999999999999998865432 24566777788888999999999999887753
No 143
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=92.24 E-value=0.51 Score=33.79 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=42.9
Q ss_pred HHHHhhhhhc---cccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEc
Q 019472 254 VYSQFLESYK---SVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 308 (340)
Q Consensus 254 ~l~q~i~pYs---~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~ 308 (340)
.+..++.--. .++...||+.+|++...|.+.|.+|..+|.|...-+. .|.=.+.
T Consensus 18 ~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~-~~~W~i~ 74 (77)
T 1qgp_A 18 RILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGT-PPLWKIA 74 (77)
T ss_dssp HHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSS-SCEEEEC
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCC-CCceEec
Confidence 3556666666 8999999999999999999999999999999765433 3554444
No 144
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=92.22 E-value=0.85 Score=46.72 Aligned_cols=97 Identities=12% Similarity=-0.033 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
..++..||..|.+.|++++|.+.|.+..+.... -.+.+.++-.+....|+++.+...+.+|-.+ +|+. ...
T Consensus 43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~---~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l-----~P~~-~~a 113 (723)
T 4gyw_A 43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPT---FADAYSNMGNTLKEMQDVQGALQCYTRAIQI-----NPAF-ADA 113 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-HHH
Confidence 457889999999999999999999998865422 2466777788888899999999999987664 2221 123
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
...-|..+...|+|.+|...|-.++.
T Consensus 114 ~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 114 HSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34457778889999999999887753
No 145
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=92.06 E-value=1.8 Score=36.07 Aligned_cols=59 Identities=15% Similarity=0.012 Sum_probs=48.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 019472 57 AKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 118 (340)
Q Consensus 57 ~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 118 (340)
.+|..|.+.|++++|.+.|.+..+.... -.+....+-.+....|++..+...+.++-..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPN---NVDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3999999999999999999998865432 2466677778888899999999999887664
No 146
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=92.05 E-value=1.4 Score=35.31 Aligned_cols=64 Identities=11% Similarity=-0.075 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 118 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 118 (340)
..++..||..|...|++++|.++|.+..+..... .+.+.++-.+....|+++.+...+.++-..
T Consensus 70 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~---~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND---YTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC---CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4568889999999999999999999988755322 245667778888899999999999988764
No 147
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=92.01 E-value=0.68 Score=39.57 Aligned_cols=97 Identities=10% Similarity=-0.061 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
..++..+|..|...|++++|.+++.++.+..... .+.+..+..+....|++..+...+.++-..-. .++. .
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~----~ 147 (275)
T 1xnf_A 77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPF----R 147 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHH----H
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc---cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CChH----H
Confidence 3467889999999999999999999988754322 35667777888889999999999998876421 1111 1
Q ss_pred hHHHHHhccccCCHHHHHHHHHhcccc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSIST 158 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~~~ 158 (340)
....++. ...+++.+|...|-.....
T Consensus 148 ~~~~~~~-~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 148 SLWLYLA-EQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHH-HHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHhcCHHHHHHHHHHHHhc
Confidence 1222222 4568999999888776543
No 148
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=92.00 E-value=1.1 Score=32.94 Aligned_cols=64 Identities=11% Similarity=-0.115 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 118 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 118 (340)
..+...+|..|...|++++|.+.+.+..+..... ...+..+..+....|++..+...+.++-..
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY---SKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3467889999999999999999999988754322 355677778888899999999998887664
No 149
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=91.84 E-value=1.5 Score=37.86 Aligned_cols=92 Identities=13% Similarity=-0.031 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHH----hcCHHHHHhHHHHHHHHHhcCCChhhh
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF----YMDFDLISKSIDKAKSLFEEGGDWERK 128 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~----~~~~~~~~~~i~ka~~~l~~~~~~~~~ 128 (340)
.+...+|..|...|++++|.++|.+..+. +. .+....+-.+... .+++..+...+.++-.. +++.
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~-~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~-- 75 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL----KE-NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----NYSN-- 75 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHH--
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CC-HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----CCHH--
Confidence 45778899999999999999999887762 11 2445556666777 88888888888887553 2322
Q ss_pred hHhhHHHHHhccc----cCCHHHHHHHHHhccc
Q 019472 129 NRLKVYEGLYCMS----TRNFKKAASLFLDSIS 157 (340)
Q Consensus 129 ~~l~~~~gl~~l~----~r~y~~Aa~~F~e~~~ 157 (340)
....-|..+.. .+++.+|..+|-.+..
T Consensus 76 --a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 106 (273)
T 1ouv_A 76 --GCHLLGNLYYSGQGVSQNTNKALQYYSKACD 106 (273)
T ss_dssp --HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHhCCCCcccCHHHHHHHHHHHHH
Confidence 22334555666 8889999888877643
No 150
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.77 E-value=1.5 Score=33.33 Aligned_cols=64 Identities=14% Similarity=0.078 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 118 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 118 (340)
..++..+|..|...|++++|.+.+.+..+.... ..+.++.+..+....+++..+...+.++-..
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGG---DVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 566889999999999999999999998865432 2456677778888899999999998887664
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=91.74 E-value=1 Score=35.78 Aligned_cols=65 Identities=14% Similarity=-0.002 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLF 119 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l 119 (340)
..++..+|..|+..|++++|.+.+.+..+.... ....+..+-.+....|++..+...+.++-..-
T Consensus 45 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 45 PIYLSNRAAAYSASGQHEKAAEDAELATVVDPK---YSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 456889999999999999999999998865432 24566777888888999999999999987753
No 152
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=91.67 E-value=0.82 Score=43.03 Aligned_cols=96 Identities=11% Similarity=0.052 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
..++..+|..|...|++++|.+.+.++.+..... .+....+..+....|++..+...+.++..... .++ ..
T Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~ 374 (514)
T 2gw1_A 304 SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN---IFPYIQLACLAYRENKFDDCETLFSEAKRKFP--EAP----EV 374 (514)
T ss_dssp THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC---SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST--TCS----HH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc--cCH----HH
Confidence 3457788999999999999999998887655332 23555666777778899998888888765421 122 23
Q ss_pred hHHHHHhccccCCHHHHHHHHHhcc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSI 156 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~ 156 (340)
...-|..+...++|.+|...|-.+.
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4556777788888988888877664
No 153
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=91.52 E-value=1.1 Score=34.46 Aligned_cols=64 Identities=5% Similarity=-0.031 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 118 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 118 (340)
..++..+|..|.+.|++++|.+.+.++.+.... ..+.+..+-.+....|++..+...+.++-.+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 47 AILYSNRAACLTKLMEFQRALDDCDTCIRLDSK---FIKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 456888999999999999999999998865422 2456777778888999999999999988764
No 154
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=91.49 E-value=1.1 Score=42.61 Aligned_cols=97 Identities=10% Similarity=0.080 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
..+...+|..|...|++++|.+.+.++.+.... ..+.+..+..+....|++..+...+.++-..-. .++ ..
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~----~~ 346 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE---YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP--ENV----YP 346 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCS----HH
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCH----HH
Confidence 356888999999999999999999998876532 235567777888899999999999998876421 111 23
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
...-|..+...++|.+|...|-.+..
T Consensus 347 ~~~la~~~~~~g~~~~A~~~~~~~~~ 372 (537)
T 3fp2_A 347 YIQLACLLYKQGKFTESEAFFNETKL 372 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556777889999999988876653
No 155
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=91.28 E-value=1 Score=32.52 Aligned_cols=55 Identities=18% Similarity=0.203 Sum_probs=42.6
Q ss_pred HHHhhhhhc---cccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEcCC
Q 019472 255 YSQFLESYK---SVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 310 (340)
Q Consensus 255 l~q~i~pYs---~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~~ 310 (340)
|.+++.-.. .++...||+.||++...|.+.|.+|-.+|.|.- ++...|.-.+..+
T Consensus 15 IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~-~g~~~~~W~i~~~ 72 (81)
T 1qbj_A 15 ILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQK-EAGTPPLWKIAVS 72 (81)
T ss_dssp HHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ESSSSCEEEEC--
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe-cCCCCCeeEEeCc
Confidence 456666556 999999999999999999999999999999954 3444466555543
No 156
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=91.17 E-value=1.4 Score=31.48 Aligned_cols=60 Identities=20% Similarity=0.063 Sum_probs=47.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHH-hHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 019472 56 LAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMD-LVFYTLQLGFFYMDFDLISKSIDKAKSL 118 (340)
Q Consensus 56 ~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~-~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 118 (340)
+.+|..++..|++++|.+.+.++.+..... .. ....+-.+....|++..+...+.++-..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVG---KDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSST---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 567999999999999999999988654322 23 5666677778889999999988887664
No 157
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=91.12 E-value=1.6 Score=31.68 Aligned_cols=63 Identities=19% Similarity=0.128 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 118 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 118 (340)
.+...+|..|...|++++|.+.+.+..+.... .......+..+....+++..+...+.++...
T Consensus 44 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45778999999999999999999998765422 1345567777888899999999888887653
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=91.02 E-value=1.4 Score=34.22 Aligned_cols=65 Identities=15% Similarity=0.086 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLF 119 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l 119 (340)
..++..+|..|...|++++|.+.|.+..+..... .+..+.+-.+....|++..+...+.++...-
T Consensus 52 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 52 ARYFLGLGACRQSLGLYEQALQSYSYGALMDINE---PRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4457889999999999999999999988654322 2455667778888999999999999887754
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=90.92 E-value=1.5 Score=31.60 Aligned_cols=63 Identities=16% Similarity=-0.003 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS 117 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~ 117 (340)
..+...+|..|...|++++|.+.+.+..+.... ....+..+..+....|++..+...+.++..
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 38 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD---WGKGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 446788999999999999999999998875432 234566677778888999999988887765
No 160
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=90.91 E-value=2.2 Score=31.39 Aligned_cols=72 Identities=13% Similarity=0.192 Sum_probs=49.7
Q ss_pred hhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEec--CCCEEEEcCCCcchHHHHHHHHhhHHHHHHH
Q 019472 258 FLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDK--VAGVLETNRPDAKNALYQATIKQGDFLLNRI 331 (340)
Q Consensus 258 ~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~--~~g~l~~~~~~~r~~~y~~~l~~~~~l~~ri 331 (340)
++.....++...||+.+|++...+-+.|..|...|-|...-|. ..+.+... +.....++.+...-+.+.+++
T Consensus 28 ~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t--~~g~~~~~~~~~~~~~~~~~~ 101 (109)
T 1sfx_A 28 LLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSA--EKPEKVLKEFKSSILGEIERI 101 (109)
T ss_dssp HHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEE--CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeecCCceEEEEec--CcHHHHHHHHHHHHHHHHHHH
Confidence 3333567999999999999999999999999999999876654 22333332 333455565555544444443
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=90.76 E-value=1.4 Score=33.22 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLF 119 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l 119 (340)
..++..+|..|...|++++|.+.+.++.+.... .......+..+....|++..+...+.++-..-
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 43 AVYYTNRALCYLKMQQPEQALADCRRALELDGQ---SVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 456889999999999999999999998865432 24566777788888999999999999887753
No 162
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=90.71 E-value=2.7 Score=40.01 Aligned_cols=100 Identities=9% Similarity=-0.087 Sum_probs=72.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhh---ccch--hHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhc---CCChhhh
Q 019472 57 AKSLFYIQIGDKEKALEQLKVTESKT---VAVG--QKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE---GGDWERK 128 (340)
Q Consensus 57 ~La~~~~~~Gd~~~A~~~l~~~~~~~---~~~~--~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~---~~~~~~~ 128 (340)
...+-+.+.|+|++|.+.+.+..+.. -.+. ..+...-++..++...|+|..+..+..++-...++ ..+|+.-
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 33444567899999999999988543 2223 35677778888899999999999999999887665 2334432
Q ss_pred hHhhHHHHHhccccCCHHHHHHHHHhccc
Q 019472 129 NRLKVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 129 ~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
. ...--|..+..+|+|.+|..+|-.++.
T Consensus 372 ~-~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 V-QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp H-HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2 223345567789999999998877653
No 163
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.53 E-value=3.9 Score=38.62 Aligned_cols=135 Identities=16% Similarity=0.105 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc-----------------------hhHHHhHH----------------
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV-----------------------GQKMDLVF---------------- 93 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~-----------------------~~~i~~~l---------------- 93 (340)
.+.+.||++|.+.|++++-.+++...+.+.... +..++.|.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999988776654211 11122211
Q ss_pred ----HHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhhHHHHHhccccCCHHHHHHHHHhccccCCcCccCCHhH
Q 019472 94 ----YTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDT 169 (340)
Q Consensus 94 ----~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~~f~~~e~~~~~~ 169 (340)
.+..+.+..|+|..+.+.+.+...-+.+..|......+......++...+|+..+-..+..+-..-++ -..+|.-
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a-i~~~p~i 178 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA-IYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-SCCCHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc-CCCCHHH
Confidence 33445667788888888888888777654455556666777777888899999888777766332211 1145555
Q ss_pred HHHHHHHHHhhhc-ChhHHH
Q 019472 170 FIFYTVLTSIISL-DRVSLK 188 (340)
Q Consensus 170 ~~~Y~~L~al~s~-~r~~l~ 188 (340)
.+.+-..++++.+ ...+.+
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk 198 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFK 198 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHhhHHHHHhccCHH
Confidence 5666666666665 443443
No 164
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=90.36 E-value=2.8 Score=38.04 Aligned_cols=97 Identities=8% Similarity=-0.124 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
..++..+|..+...|++++|.+.+.+..+.... .......+..+....|++..+...+.++-..- ..+++ .
T Consensus 203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~----~ 273 (388)
T 1w3b_A 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPN---HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPD----A 273 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHH----H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHH----H
Confidence 456778888888888888888888877654321 13445566677777888888888777765531 11122 2
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
...-|..+...++|.+|...|-.+..
T Consensus 274 ~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 274 YCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 23345566677888888877776643
No 165
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=90.35 E-value=1.7 Score=34.37 Aligned_cols=65 Identities=9% Similarity=0.030 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLF 119 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l 119 (340)
..++..+|..|...|++++|.+.|.++....... .+.++.+-.+....|++..+...+.++-..-
T Consensus 55 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 55 SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE---PRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3457789999999999999999999988654221 2456677788889999999999999887653
No 166
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=90.28 E-value=1.2 Score=32.99 Aligned_cols=64 Identities=11% Similarity=-0.043 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 118 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 118 (340)
..+...+|..|...|++++|.+.+.+..+.... ....+..+..+....|++..+...+.++-..
T Consensus 50 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 50 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT---FIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 456788999999999999999999998865432 2355667777888899999999998887664
No 167
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=90.22 E-value=1.3 Score=43.28 Aligned_cols=97 Identities=7% Similarity=-0.062 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
..++..+|..|...|++++|.+.|.+..+.... ..+....+..+....|+++.+...+.++-..-. .++ ..
T Consensus 57 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~----~~ 127 (568)
T 2vsy_A 57 PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE---HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP--EEP----YI 127 (568)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH----HH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH----HH
Confidence 456888999999999999999999998875432 245667777888889999999999988766421 111 12
Q ss_pred hHHHHHhcccc---CCHHHHHHHHHhccc
Q 019472 132 KVYEGLYCMST---RNFKKAASLFLDSIS 157 (340)
Q Consensus 132 ~~~~gl~~l~~---r~y~~Aa~~F~e~~~ 157 (340)
...-|..+... +++.+|...|-.++.
T Consensus 128 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 128 TAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 23344555566 899999888877653
No 168
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=90.15 E-value=1.3 Score=40.24 Aligned_cols=63 Identities=14% Similarity=-0.002 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS 117 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~ 117 (340)
..++..+|..|.+.|++++|.+.|.+..+... ...+.+..+..+....|++..+...+.++-.
T Consensus 67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 129 (388)
T 1w3b_A 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKP---DFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34578889999999999999999988775432 1234556666667777777777777666544
No 169
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=89.83 E-value=3 Score=39.85 Aligned_cols=94 Identities=11% Similarity=0.126 Sum_probs=69.1
Q ss_pred HHhCCHHHHHHHHHHHHhh---hccchh--HHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcC---CChhhhhHhhHH
Q 019472 63 IQIGDKEKALEQLKVTESK---TVAVGQ--KMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG---GDWERKNRLKVY 134 (340)
Q Consensus 63 ~~~Gd~~~A~~~l~~~~~~---~~~~~~--~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~---~~~~~~~~l~~~ 134 (340)
...|+|++|...+.+.++. .-.++| .+...-++..++...|+|+.+..+..++-...++. .+|+.-..+ --
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l-~n 387 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW-LK 387 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH-HH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH-HH
Confidence 4569999999999987753 233333 56677788888999999999999999998877652 344433222 23
Q ss_pred HHHhccccCCHHHHHHHHHhccc
Q 019472 135 EGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 135 ~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
-|..+..+|+|.+|..+|-.++.
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHH
Confidence 45667889999999999887643
No 170
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=89.64 E-value=3.4 Score=35.49 Aligned_cols=92 Identities=18% Similarity=0.061 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHH----hcCHHHHHhHHHHHHHHHhcCCC
Q 019472 53 EAHLAKSLFYIQ----IGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF----YMDFDLISKSIDKAKSLFEEGGD 124 (340)
Q Consensus 53 ~~~~~La~~~~~----~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~----~~~~~~~~~~i~ka~~~l~~~~~ 124 (340)
.+...||..|.. .|++++|.+.|.+..+.. ..+.+..+-.+... .+++..+...+.++-.. ++
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~ 109 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----KY 109 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----CC
Confidence 568889999999 999999999999987653 23555666677777 89999999999887653 23
Q ss_pred hhhhhHhhHHHHHhccc----cCCHHHHHHHHHhccc
Q 019472 125 WERKNRLKVYEGLYCMS----TRNFKKAASLFLDSIS 157 (340)
Q Consensus 125 ~~~~~~l~~~~gl~~l~----~r~y~~Aa~~F~e~~~ 157 (340)
+. ....-|.++.. .+++.+|..+|-.+..
T Consensus 110 ~~----a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 110 AE----GCASLGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp HH----HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred cc----HHHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 33 22334555555 8899999999988754
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=89.60 E-value=1.3 Score=33.66 Aligned_cols=63 Identities=10% Similarity=-0.135 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS 117 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~ 117 (340)
..+++.+|..+...|++++|.+.|.+..+.... -.+....+..+....|++..+...+.++-.
T Consensus 51 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 51 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---DIAVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456889999999999999999999998875432 234566777777888999888888877654
No 172
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=89.59 E-value=1.8 Score=34.17 Aligned_cols=64 Identities=14% Similarity=0.072 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 118 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 118 (340)
..++..+|..|.+.|++++|.+.+.++.+.... ....++..-.+....|++..+...+.++-.+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREET---NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 346889999999999999999999998875422 2456677778888999999999999988775
No 173
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=89.51 E-value=0.57 Score=45.03 Aligned_cols=96 Identities=13% Similarity=-0.114 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHh---------cCHHHHHhHHHHHHHHHhcC
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFY---------MDFDLISKSIDKAKSLFEEG 122 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~---------~~~~~~~~~i~ka~~~l~~~ 122 (340)
..++..||..|+..|++++|.++|.++.+... + ...+..+..+.... |++..+...+.++-..- .
T Consensus 137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p 210 (474)
T 4abn_A 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK--N--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--V 210 (474)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCC--C--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--C--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--C
Confidence 45688999999999999999999999987653 3 25566666777777 88888888888776541 1
Q ss_pred CChhhhhHhhHHHHHhcccc--------CCHHHHHHHHHhccc
Q 019472 123 GDWERKNRLKVYEGLYCMST--------RNFKKAASLFLDSIS 157 (340)
Q Consensus 123 ~~~~~~~~l~~~~gl~~l~~--------r~y~~Aa~~F~e~~~ 157 (340)
.++. ....-|..+... ++|.+|...|-.+..
T Consensus 211 ~~~~----~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 249 (474)
T 4abn_A 211 LDGR----SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK 249 (474)
T ss_dssp TCHH----HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCHH----HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 1122 223334444444 789999888877653
No 174
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=89.35 E-value=1.9 Score=41.30 Aligned_cols=71 Identities=14% Similarity=-0.027 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh---hccch--hHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhc
Q 019472 51 VREAHLAKSLFYIQIGDKEKALEQLKVTESK---TVAVG--QKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE 121 (340)
Q Consensus 51 ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~---~~~~~--~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~ 121 (340)
+..++..||..|...|+|++|..++.++.+- .-.+. .....+.++-.++...|+++.+...+.||-.+.+.
T Consensus 339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~ 414 (433)
T 3qww_A 339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEV 414 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 4566889999999999999999999997743 22222 34566677788888999999999999999998765
No 175
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=89.33 E-value=3.2 Score=37.67 Aligned_cols=90 Identities=12% Similarity=0.061 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
..++..+|..|.+.|++++|.+.+.++.+.... ....+..+-.+....|++..+...+.++-..- ..++. .
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~----a 266 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSN---NEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKA----A 266 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHH----H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHH----H
Confidence 356889999999999999999999998876532 23566777788888999999999999987641 11111 2
Q ss_pred hHHHHHhccccCCHHHHHH
Q 019472 132 KVYEGLYCMSTRNFKKAAS 150 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~ 150 (340)
...-|..+...+++.+|..
T Consensus 267 ~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 267 KTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2333445556667777644
No 176
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=89.12 E-value=0.77 Score=31.75 Aligned_cols=42 Identities=19% Similarity=0.178 Sum_probs=34.9
Q ss_pred HHHhhhhh-ccccHHHHHHHhCCChHHHHHHHHHHhhCCccce
Q 019472 255 YSQFLESY-KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC 296 (340)
Q Consensus 255 l~q~i~pY-s~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~a 296 (340)
+.+++..- ..++...||+.+|+|...+.+.|..|..+|-|..
T Consensus 15 IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 15 ILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 44455433 4699999999999999999999999999998744
No 177
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=88.67 E-value=3 Score=39.75 Aligned_cols=71 Identities=15% Similarity=-0.072 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh---ccc--hhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhc
Q 019472 51 VREAHLAKSLFYIQIGDKEKALEQLKVTESKT---VAV--GQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE 121 (340)
Q Consensus 51 ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~---~~~--~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~ 121 (340)
+...+..||..|...|+|++|.+++.++.+-. -.+ -.....+.++..++...|+++.+...+.||-.+++.
T Consensus 328 ~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~ 403 (429)
T 3qwp_A 328 QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV 403 (429)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 45568899999999999999999999877432 222 234566777888888999999999999999998765
No 178
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.20 E-value=8.6 Score=31.69 Aligned_cols=103 Identities=7% Similarity=-0.028 Sum_probs=56.2
Q ss_pred ccCCCCcchhHhhhhhhcchHHHHhhccccchhHHHHh---h-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc
Q 019472 8 IMRSPPPPSFGHLCLLLSYLVVISFVMPLSRIADAEEN---L-GESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTV 83 (340)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~n---~-~~~~ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~ 83 (340)
.-||.|.-++..+.+......-.+.+-.-+.|-...+| . .-+.-.+...-+|+.++..|+|..|...|.+....+.
T Consensus 15 ~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k 94 (167)
T 3ffl_A 15 VPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK 94 (167)
T ss_dssp ------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 45677777777766655544333333222222222222 1 2233455688999999999999999999999765442
Q ss_pred c-chh---------------------HHHhHHHHHHHHHHhcCHHHHHh
Q 019472 84 A-VGQ---------------------KMDLVFYTLQLGFFYMDFDLISK 110 (340)
Q Consensus 84 ~-~~~---------------------~i~~~l~~i~~~i~~~~~~~~~~ 110 (340)
. ++. -.+..+.+.++++..+++..+..
T Consensus 95 ~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~ 143 (167)
T 3ffl_A 95 ALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIA 143 (167)
T ss_dssp CC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHH
Confidence 1 001 12455666666666666666643
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=88.00 E-value=0.63 Score=44.95 Aligned_cols=97 Identities=11% Similarity=-0.001 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
..++..+|..|.+.|++++|.+.+.++.+.... ....+..+..+....|+++.+...+.++-..- ..++. ...
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--p~~~~--~~~ 112 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKK---YIKGYYRRAASNMALGKFRAALRDYETVVKVK--PHDKD--AKM 112 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCTT--HHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHH--HHH
Confidence 456788999999999999999999888765322 23456667777788899999988888876641 11222 222
Q ss_pred hHHHHHhccccCCHHHHHHHHHhc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDS 155 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~ 155 (340)
....+..+...++|.+|...+-+.
T Consensus 113 ~l~~~~~~~~~g~~~~A~~~~~~~ 136 (477)
T 1wao_1 113 KYQECNKIVKQKAFERAIAGDEHK 136 (477)
T ss_dssp HHHHHHHHHHHHHHCCC------C
T ss_pred HHHHHHHHHHHHHHHHHhcccccc
Confidence 222222356677888887776643
No 180
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=87.91 E-value=3.9 Score=34.18 Aligned_cols=92 Identities=17% Similarity=0.154 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhc----CHHHHHhHHHHHHHHHhcCCChhh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYM----DFDLISKSIDKAKSLFEEGGDWER 127 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~----~~~~~~~~i~ka~~~l~~~~~~~~ 127 (340)
..+...||.+|...||+++|.++|.+..+.- . .+.+..+-.+... + |+..+..++.++-. .+++.-
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~-~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~----~g~~~a 87 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----D-GDALALLAQLKIR-NPQQADYPQARQLAEKAVE----AGSKSG 87 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----C-HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH----TTCHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----C-HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH----CCCHHH
Confidence 4578899999999999999999999986532 1 2333333333333 5 78888888888732 234332
Q ss_pred hhHhhHHHHHhccc----cCCHHHHHHHHHhccc
Q 019472 128 KNRLKVYEGLYCMS----TRNFKKAASLFLDSIS 157 (340)
Q Consensus 128 ~~~l~~~~gl~~l~----~r~y~~Aa~~F~e~~~ 157 (340)
. ..-|.++.. .+|+.+|..+|-.+..
T Consensus 88 ~----~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 117 (212)
T 3rjv_A 88 E----IVLARVLVNRQAGATDVAHAITLLQDAAR 117 (212)
T ss_dssp H----HHHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred H----HHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence 2 223445555 7899999999988753
No 181
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=87.76 E-value=2.6 Score=34.47 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 118 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 118 (340)
.++..+|..|...|++++|.+.+.++.+.... ....+..+..+....|++..+...+.++-..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN---NVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 56889999999999999999999998875432 2356677778888899999999999887664
No 182
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=87.51 E-value=3.5 Score=36.35 Aligned_cols=60 Identities=8% Similarity=-0.057 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHH
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKA 115 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka 115 (340)
..++.+|..+.+.|++++|.+.|.++.+..... .+...++.++.+..|+++.+...+.++
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~la~~~~~~g~~~~A~~~l~~~ 177 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN---GEIGLLLAETLIALNRSEDAEAVLXTI 177 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc---hhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 457889999999999999999999988655322 366778888899999999998877765
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=87.47 E-value=3.2 Score=39.53 Aligned_cols=94 Identities=11% Similarity=0.138 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
..++..+|..|++.|+|++|++.+.++.+.... ....++..-.++...+++..+...+.+|-.+ +|... ..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l-----~P~~~-~a 387 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSA---NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-----NPQNK-AA 387 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----C-----CH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCH-HH
Confidence 356889999999999999999999998875432 2456777788888999999999999998764 22211 12
Q ss_pred hHHHHHhccccCCHHHHHHHHHh
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLD 154 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e 154 (340)
...-|..+...+++..|....+.
T Consensus 388 ~~~l~~~~~~~~~~~~a~~~~~~ 410 (457)
T 1kt0_A 388 RLQISMCQKKAKEHNERDRRIYA 410 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334445556677777655443
No 184
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=87.11 E-value=1.6 Score=33.38 Aligned_cols=64 Identities=5% Similarity=0.131 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhccc-cHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEc
Q 019472 243 FRYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 308 (340)
Q Consensus 243 ~~~l~~~ir~~~l~q~i~pYs~I-~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~ 308 (340)
...+++.|+..+...-+.|=..+ +...||+.||+|...+-+-+..|..+|-|.. .+..|+.+..
T Consensus 11 ~~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~--~~~~G~~V~~ 75 (113)
T 3tqn_A 11 YQQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEK--RRGLGMLVKA 75 (113)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECT
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--ecCCeEEEeC
Confidence 45678888888888888899999 9999999999999999999999999998754 3666776654
No 185
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=86.78 E-value=6.3 Score=28.47 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCC
Q 019472 249 EVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 303 (340)
Q Consensus 249 ~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g 303 (340)
..|.+++. ++.....++...+|+.+|++...+-+.|.+|...|-+...-+..++
T Consensus 16 ~~~~~iL~-~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~ 69 (100)
T 1ub9_A 16 PVRLGIMI-FLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADR 69 (100)
T ss_dssp HHHHHHHH-HHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred hHHHHHHH-HHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCc
Confidence 33444443 3333467999999999999999999999999999999877644333
No 186
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=86.68 E-value=3.5 Score=32.06 Aligned_cols=64 Identities=9% Similarity=0.136 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhccc-cHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEc
Q 019472 243 FRYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 308 (340)
Q Consensus 243 ~~~l~~~ir~~~l~q~i~pYs~I-~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~ 308 (340)
...+++.|+..+...-+.|=..+ +...||+.||+|...|-+-+..|..+|-|.. -+..|+.+..
T Consensus 15 ~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~--~~g~G~~V~~ 79 (125)
T 3neu_A 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYA--KRGMGSFVTS 79 (125)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEE--ecCCEEEEec
Confidence 45678888888888788898899 6999999999999999999999999998854 3566777765
No 187
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=86.59 E-value=1.4 Score=42.42 Aligned_cols=95 Identities=11% Similarity=-0.045 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhhHH
Q 019472 55 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVY 134 (340)
Q Consensus 55 ~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~~~ 134 (340)
+..+|..+++.|++++|.+.|.+..+.... ....+.++..+....+++..+...+.+|-.. +|.. ......
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~-~~~~~~ 79 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIEL-----DKKY-IKGYYR 79 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CTTC-HHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCC-HHHHHH
Confidence 456788888899999999999988765422 2456667777788889999998888887664 2221 223344
Q ss_pred HHHhccccCCHHHHHHHHHhcccc
Q 019472 135 EGLYCMSTRNFKKAASLFLDSIST 158 (340)
Q Consensus 135 ~gl~~l~~r~y~~Aa~~F~e~~~~ 158 (340)
-|..+...++|.+|...|-.+...
T Consensus 80 lg~~~~~~g~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 80 RAASNMALGKFRAALRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567777888888888888776543
No 188
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=86.15 E-value=8.2 Score=30.19 Aligned_cols=65 Identities=14% Similarity=0.235 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhccc-cHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEcC
Q 019472 243 FRYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNR 309 (340)
Q Consensus 243 ~~~l~~~ir~~~l~q~i~pYs~I-~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~ 309 (340)
...+++.|+..++..-+.|=..+ +...||+.||+|...|-+-+..|-.+|-+..+ +..|+.+...
T Consensus 16 Y~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~--~g~G~~V~~~ 81 (134)
T 4ham_A 16 YEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITV--KGKGTFIANQ 81 (134)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEE--cCcEEEEeCC
Confidence 45678888888888889999999 89999999999999999999999999988654 6678777543
No 189
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=86.11 E-value=4.7 Score=36.20 Aligned_cols=100 Identities=11% Similarity=-0.057 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhhH
Q 019472 54 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 133 (340)
Q Consensus 54 ~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~~ 133 (340)
+.+-+|.++++.|++++|.+.+....... .+...-+.++.+=.+.-..|++..+...+.++.. ...+|........
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~---g~~~P~~~~da~~ 212 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND---SPAGEACARAIAW 212 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---STTTTTTHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc---CCCCccccHHHHH
Confidence 78889999999999999999997543322 1111223555555666778999999999998753 1122444445668
Q ss_pred HHHHhccccCCHHHHHHHHHhccc
Q 019472 134 YEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 134 ~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
+.|+.+...|+..+|...|-.+..
T Consensus 213 ~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 213 YLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 899999999999999999987754
No 190
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=85.97 E-value=2.6 Score=31.70 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=46.4
Q ss_pred HHHHHHHhhhhhccc-cHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEc
Q 019472 251 RTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 308 (340)
Q Consensus 251 r~~~l~q~i~pYs~I-~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~ 308 (340)
+.+++ ..+.|-..+ +...||+.||+|...|-+.|..|..+|-|..+=....|+....
T Consensus 30 ~~~I~-~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V~~ 87 (102)
T 2b0l_A 30 IEHIF-EELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIKV 87 (102)
T ss_dssp HHHHT-TSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEEEE
T ss_pred HHHHH-hhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEEec
Confidence 66666 777888887 9999999999999999999999999999865432246776654
No 191
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=85.96 E-value=4.3 Score=40.86 Aligned_cols=64 Identities=20% Similarity=0.243 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 118 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 118 (340)
..+++.+|..|.+.|++++|.+.|.++.+.... -.+.++.+-.+....|+++.+...+.+|-..
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 496 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGW---RWRLVWYRAVAELLTGDYDSATKHFTEVLDT 496 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456888899999999999999999888765422 1355666667777889999998888887664
No 192
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=85.63 E-value=1.8 Score=30.82 Aligned_cols=42 Identities=21% Similarity=0.134 Sum_probs=35.6
Q ss_pred HHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccce
Q 019472 255 YSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC 296 (340)
Q Consensus 255 l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~a 296 (340)
+.+++.....++.+.||+.||+|...+-+.|..|...|.|..
T Consensus 5 Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 5 ILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 344554446799999999999999999999999999999863
No 193
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=85.37 E-value=1.7 Score=33.96 Aligned_cols=64 Identities=9% Similarity=0.113 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhccc-cHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEc
Q 019472 243 FRYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 308 (340)
Q Consensus 243 ~~~l~~~ir~~~l~q~i~pYs~I-~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~ 308 (340)
...+++.|+..+...-+.|=..+ +...||+.||+|...|-+-+..|..+|-|. .-+..|+.+..
T Consensus 13 ~~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~--~~~g~G~~V~~ 77 (126)
T 3by6_A 13 YLQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIR--TIPGKGTFITG 77 (126)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE--EETTTEEEECS
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE--EecCCeEEEcc
Confidence 46778888888888788899999 999999999999999999999999999884 35667877765
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=84.94 E-value=1.5 Score=39.94 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 019472 54 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 118 (340)
Q Consensus 54 ~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 118 (340)
++..+|..|.+.|+|++|.+.+.++.+.... ....++.+-.+....+++..+...+.++-..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK---NPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999998865432 2456677778888899999999998887653
No 195
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=84.90 E-value=0.5 Score=35.81 Aligned_cols=71 Identities=15% Similarity=0.166 Sum_probs=49.5
Q ss_pred ChhHhhhHHHHHHHHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceE--EecCCCEEE
Q 019472 236 DRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCK--IDKVAGVLE 306 (340)
Q Consensus 236 D~~l~~h~~~l~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~ak--ID~~~g~l~ 306 (340)
+|.+..-+..+++..+.+++.....|=..++...||+.+|+|...+-+.|..|...|-+..+ -|+..|...
T Consensus 5 ~~~~~~~~~~~~~~~~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~~~~~~~~g~~v 77 (110)
T 1q1h_A 5 EDLFINLAKSLLGDDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFI 77 (110)
T ss_dssp TTHHHHHHHTTSCSTTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEEEEC---CCCCE
T ss_pred HHHHHHHHHHHcChHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecccCCCceEE
Confidence 33444444445555556666666566657999999999999999999999999999999764 124455433
No 196
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=84.50 E-value=1.8 Score=39.68 Aligned_cols=64 Identities=11% Similarity=0.083 Sum_probs=47.7
Q ss_pred ccHHHHHHHHHHhHHHhhcChhHhhh-HHHHHHHHHHHHHHHhhhhh----ccccHHHHHHHhCCC-hHHHHHHH
Q 019472 217 CQYKSFFSAFAGLTEQIKLDRYLYPH-FRYYMREVRTVVYSQFLESY----KSVTIEAMAKAFGVT-VEFIDVEL 285 (340)
Q Consensus 217 ~~~~~~~~~L~~~~~~l~~D~~l~~h-~~~l~~~ir~~~l~q~i~pY----s~I~l~~mA~~~g~~-~~~vE~~L 285 (340)
++|..|++....- .-+|+..+ .+.++..+|.+++..+...| ..++++.+++.||.+ ++++++.+
T Consensus 177 gNY~rFFrL~~~~-----~~pyL~aclle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~ 246 (316)
T 3t5v_A 177 NFYARFFQLMQSP-----SLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFC 246 (316)
T ss_dssp CCHHHHHHHHTCT-----TSCHHHHHHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHH
T ss_pred chHHHHHHHHhcc-----CCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHH
Confidence 6899999876531 13555544 34457789999999999999 489999999999995 56655554
No 197
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=84.35 E-value=10 Score=29.20 Aligned_cols=70 Identities=13% Similarity=0.174 Sum_probs=52.6
Q ss_pred ccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecC--CCEEEEcCCCcchHHHHHHHHhhHHHHHHHHHh
Q 019472 265 VTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKV--AGVLETNRPDAKNALYQATIKQGDFLLNRIQKL 334 (340)
Q Consensus 265 I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~--~g~l~~~~~~~r~~~y~~~l~~~~~l~~ri~~l 334 (340)
++...||+.+|++...+-+.|..|...|-+.-.-+.. .|....+.+.+....++.+.+..+...+++...
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~~~~~~~~~~i~~~~~~~~~~~~~~ 114 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKIYSKNQIRNIIQKIVQSWADRLGQE 114 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEecCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997655443 233444444455677777777766666666554
No 198
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=84.06 E-value=2.9 Score=33.96 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=42.6
Q ss_pred HHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccc---eEEecCC
Q 019472 253 VVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH---CKIDKVA 302 (340)
Q Consensus 253 ~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~---akID~~~ 302 (340)
+.+.+.++--.+++...||+.+|+|+..+-+.+.+|...|.|. +.+|+..
T Consensus 6 ~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~~ 58 (162)
T 3i4p_A 6 RKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPVK 58 (162)
T ss_dssp HHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTTT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHHH
Confidence 3456677767889999999999999999999999999999874 6788653
No 199
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=83.89 E-value=11 Score=27.99 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=34.6
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEe
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKID 299 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID 299 (340)
...++...+|+.+|++...+-+.|..|...|-+...-+
T Consensus 32 ~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 32 RADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp HSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec
Confidence 45689999999999999999999999999999987666
No 200
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=83.10 E-value=4.7 Score=29.33 Aligned_cols=57 Identities=25% Similarity=0.220 Sum_probs=41.3
Q ss_pred ChhHhhhHHHHHHHHHHHHHHHhhhhhc-cccHHHHHHHhCCChHH-HHHHHHHHhhCCccc
Q 019472 236 DRYLYPHFRYYMREVRTVVYSQFLESYK-SVTIEAMAKAFGVTVEF-IDVELSRFIAAGKLH 295 (340)
Q Consensus 236 D~~l~~h~~~l~~~ir~~~l~q~i~pYs-~I~l~~mA~~~g~~~~~-vE~~L~~lI~~g~l~ 295 (340)
|..+......+.+.+.. ..++.... .++.+.+|+.+|++... +-+.|.+|...|-+.
T Consensus 4 ~~~l~~~~g~~~~~l~~---L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 4 DETLRLQFGHLIRILPT---LLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp CGGGGSBHHHHHHHHHH---HHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred HHHHHHHhhhHHHHHHH---HHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 34444444444444433 33333344 69999999999999999 999999999999997
No 201
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=82.72 E-value=4 Score=33.58 Aligned_cols=47 Identities=11% Similarity=0.207 Sum_probs=39.9
Q ss_pred HHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccc---eEEecC
Q 019472 255 YSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH---CKIDKV 301 (340)
Q Consensus 255 l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~---akID~~ 301 (340)
+...+..-.+++.+.||+.+|+|...+-+.|.+|...|-|. +.+|+.
T Consensus 22 IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 22 ILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIERYTIILGEQ 71 (171)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTT
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecccCCHH
Confidence 45555556789999999999999999999999999999885 467765
No 202
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=82.58 E-value=7.3 Score=34.36 Aligned_cols=96 Identities=11% Similarity=-0.075 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhh
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 132 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~ 132 (340)
.++..+|.++...|++++|.+.|.++.+....... ..+.....+....|++..+...+.+|-..- |.. ..
T Consensus 100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----p~~---~~ 169 (308)
T 2ond_A 100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--LVYIQYMKFARRAEGIKSGRMIFKKAREDA-----RTR---HH 169 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--HHHHHHHHHHHHHHCHHHHHHHHHHHHTST-----TCC---TH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc--HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----CCC---HH
Confidence 35778999999999999999999998874322111 155566666777888888888888775531 111 12
Q ss_pred HHHHHhccc---cCCHHHHHHHHHhcccc
Q 019472 133 VYEGLYCMS---TRNFKKAASLFLDSIST 158 (340)
Q Consensus 133 ~~~gl~~l~---~r~y~~Aa~~F~e~~~~ 158 (340)
++.+...+. .+++.+|...|-.++..
T Consensus 170 ~~~~~a~~~~~~~~~~~~A~~~~~~al~~ 198 (308)
T 2ond_A 170 VYVTAALMEYYCSKDKSVAFKIFELGLKK 198 (308)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333444332 68999999888776543
No 203
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=82.39 E-value=9.8 Score=27.67 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=38.8
Q ss_pred HHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCC
Q 019472 254 VYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVA 302 (340)
Q Consensus 254 ~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~ 302 (340)
.+..++.....++...||+.+|++...+-+.|..|...|-+...-+..+
T Consensus 26 ~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~ 74 (109)
T 2d1h_A 26 VLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGK 74 (109)
T ss_dssp HHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC---
T ss_pred HHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccC
Confidence 3444444457799999999999999999999999999999987666544
No 204
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=82.31 E-value=5.4 Score=36.86 Aligned_cols=64 Identities=11% Similarity=0.054 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 118 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 118 (340)
..++..+|..|++.|++++|.+.+.++.+.... ....+..+-.+....++++.+...+.+|...
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS---NTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 456889999999999999999999999875432 2456677777888899999999999998775
No 205
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=81.84 E-value=0.68 Score=34.68 Aligned_cols=64 Identities=16% Similarity=0.265 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhccc-cHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEc
Q 019472 243 FRYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 308 (340)
Q Consensus 243 ~~~l~~~ir~~~l~q~i~pYs~I-~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~ 308 (340)
...+++.++.+++...+.|=..+ +...||+.||+|...+-+.|..|...|-+.. -+..|+....
T Consensus 13 ~~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~--~~g~G~~v~~ 77 (102)
T 1v4r_A 13 YADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSS--RGALGTVVEK 77 (102)
T ss_dssp HHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEE--ETTTEEESCS
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--eCCCeEEEcc
Confidence 45778888887777677888888 9999999999999999999999999998854 3445665544
No 206
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=81.78 E-value=3 Score=33.04 Aligned_cols=48 Identities=6% Similarity=0.164 Sum_probs=40.7
Q ss_pred HHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccc---eEEecC
Q 019472 254 VYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH---CKIDKV 301 (340)
Q Consensus 254 ~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~---akID~~ 301 (340)
.+...+....+++...||+.+|+|...+-+.|.+|...|-|. +.+|+.
T Consensus 9 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 9 NIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEecccChh
Confidence 355566667889999999999999999999999999999885 457765
No 207
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=81.47 E-value=3.1 Score=32.67 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhccc-cHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEc
Q 019472 243 FRYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 308 (340)
Q Consensus 243 ~~~l~~~ir~~~l~q~i~pYs~I-~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~ 308 (340)
...+++.|+..++..-+.|=..+ +...||+.||+|...|-+-+..|..+|-+. .-+..|+.+..
T Consensus 6 ~~~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~--~~~g~G~~V~~ 70 (129)
T 2ek5_A 6 YKQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILY--KKRGIGMFVSA 70 (129)
T ss_dssp HHHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEE--EETTTEEEECT
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE--EecCCEEEEec
Confidence 35677888888777778898999 999999999999999999999999999874 45667777654
No 208
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=81.27 E-value=6.1 Score=34.87 Aligned_cols=100 Identities=8% Similarity=-0.045 Sum_probs=67.1
Q ss_pred HHHHHHHHHH-hCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhhH
Q 019472 55 HLAKSLFYIQ-IGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 133 (340)
Q Consensus 55 ~~~La~~~~~-~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~~ 133 (340)
+...+.+.+. .|++++|.++|.+..+.+.. ..+.+...+.+....|+...+...+.++-... ..+|+....+-.
T Consensus 171 ~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--~l~p~~~~~l~~ 245 (308)
T 2ond_A 171 YVTAALMEYYCSKDKSVAFKIFELGLKKYGD---IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG--SLPPEKSGEIWA 245 (308)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS--SSCGGGCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc--CCCHHHHHHHHH
Confidence 4444555443 69999999999998876643 24666777788888899999999999886631 123332233333
Q ss_pred HHHHhccccCCHHHHHHHHHhccccC
Q 019472 134 YEGLYCMSTRNFKKAASLFLDSISTF 159 (340)
Q Consensus 134 ~~gl~~l~~r~y~~Aa~~F~e~~~~f 159 (340)
.-+-+....|++..|...+-.+...+
T Consensus 246 ~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 246 RFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 34444556788888887777665544
No 209
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=80.16 E-value=16 Score=30.19 Aligned_cols=60 Identities=10% Similarity=-0.053 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhC----CHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHH----hcCHHHHHhHHHHHHH
Q 019472 52 REAHLAKSLFYIQIG----DKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF----YMDFDLISKSIDKAKS 117 (340)
Q Consensus 52 r~~~~~La~~~~~~G----d~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~----~~~~~~~~~~i~ka~~ 117 (340)
..+...||.+|.. | |+++|.++|.+..+.- ..+.+..+-.+... .+|+..+...+.++-.
T Consensus 50 ~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g-----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 117 (212)
T 3rjv_A 50 GDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG-----SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR 117 (212)
T ss_dssp HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence 3456666777666 5 6777777776664321 12233333333333 4566666666665543
No 210
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=79.86 E-value=7.1 Score=30.88 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=50.4
Q ss_pred HHHHHHHHH-HHHhCCH--HHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 019472 53 EAHLAKSLF-YIQIGDK--EKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 118 (340)
Q Consensus 53 ~~~~~La~~-~~~~Gd~--~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 118 (340)
.+...+|.. |...|++ ++|.+.+.++.+..... ......+..+....|++..+...+.++-..
T Consensus 79 ~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 79 ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE---ITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 457789999 8899999 99999999988654322 355667778888999999999988887664
No 211
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=79.38 E-value=3.3 Score=33.11 Aligned_cols=48 Identities=23% Similarity=0.316 Sum_probs=40.9
Q ss_pred HHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccc---eEEecCC
Q 019472 255 YSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH---CKIDKVA 302 (340)
Q Consensus 255 l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~---akID~~~ 302 (340)
+...+....+++...||+.+|+|...+-+.+.+|...|-|. +.+|+..
T Consensus 13 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~ 63 (152)
T 2cg4_A 13 ILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPKQ 63 (152)
T ss_dssp HHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTTT
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEEEecCHHH
Confidence 45556666889999999999999999999999999999885 4678763
No 212
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=79.28 E-value=2.7 Score=39.15 Aligned_cols=63 Identities=11% Similarity=-0.126 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHH-HHhcCHHHHHhHHHHHHH
Q 019472 55 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLG-FFYMDFDLISKSIDKAKS 117 (340)
Q Consensus 55 ~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~-i~~~~~~~~~~~i~ka~~ 117 (340)
...+|..|...|++++|.++|.++.+....+...-........+. ...+++..+..+..++-.
T Consensus 337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 337 CSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 567899999999999999999998865544433333333333333 245788888877777644
No 213
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=79.00 E-value=8.4 Score=35.86 Aligned_cols=63 Identities=10% Similarity=-0.070 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcC-HHHHHhHHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMD-FDLISKSIDKAKS 117 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~-~~~~~~~i~ka~~ 117 (340)
..++..+|.++...|++++|++.+.++.+.... ..+.+...-.+....|+ +..+...+.++-.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~---~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~ 160 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA---NYTVWHFRRVLLKSLQKDLHEEMNYITAIIE 160 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc---CHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 444555666666666666666666666543321 12333333444444553 6666666555544
No 214
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=78.96 E-value=8 Score=33.84 Aligned_cols=64 Identities=17% Similarity=0.190 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 118 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 118 (340)
..++..+|..|.+.|++++|.+.+.++.+.... ....+..+..+....|++..+...+.++-..
T Consensus 38 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 38 AVYYTNRALCYLKMQQPEQALADCRRALELDGQ---SVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345788999999999999999999998865422 2345566677788899999999999988764
No 215
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=78.84 E-value=4.1 Score=41.03 Aligned_cols=95 Identities=7% Similarity=-0.141 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 131 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l 131 (340)
..++..+|..|...|++++|.+.|.++.+..... .+.+.++-.+....|+++. ...+.+|-.. +|.. ...
T Consensus 467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~~~~~g~~~~-~~~~~~al~~-----~P~~-~~a 536 (681)
T 2pzi_A 467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE---LAPKLALAATAELAGNTDE-HKFYQTVWST-----NDGV-ISA 536 (681)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---SHHHHHHHHHHHHHTCCCT-TCHHHHHHHH-----CTTC-HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCChHH-HHHHHHHHHh-----CCch-HHH
Confidence 4568889999999999999999999988654322 3555677777888899988 8888887653 2221 123
Q ss_pred hHHHHHhccccCCHHHHHHHHHhcc
Q 019472 132 KVYEGLYCMSTRNFKKAASLFLDSI 156 (340)
Q Consensus 132 ~~~~gl~~l~~r~y~~Aa~~F~e~~ 156 (340)
...-|..+...++|.+|...|-.+.
T Consensus 537 ~~~lg~~~~~~g~~~~A~~~~~~al 561 (681)
T 2pzi_A 537 AFGLARARSAEGDRVGAVRTLDEVP 561 (681)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 3556777888999999999987764
No 216
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=78.55 E-value=2.8 Score=33.44 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=40.8
Q ss_pred HHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccc---eEEecC
Q 019472 254 VYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH---CKIDKV 301 (340)
Q Consensus 254 ~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~---akID~~ 301 (340)
.+...+....+++.+.||+.+|+|...+-+.+.+|...|.+. +.+|..
T Consensus 13 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 13 QLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEEEEECTG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEecCChH
Confidence 355666667899999999999999999999999999999885 457765
No 217
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=78.19 E-value=8.1 Score=42.63 Aligned_cols=58 Identities=10% Similarity=0.038 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS 117 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~ 117 (340)
...+..+|..+.+.|++++|.++|.+. .-.+.+..++..+-..|+|+.+..++.+|+.
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA--------dD~say~eVa~~~~~lGkyEEAIeyL~mArk 1162 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARK 1162 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 556788999999999999999998664 2235556677777888888888888877764
No 218
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=78.12 E-value=4.1 Score=32.93 Aligned_cols=48 Identities=13% Similarity=0.075 Sum_probs=40.3
Q ss_pred HHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccc---eEEecC
Q 019472 254 VYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH---CKIDKV 301 (340)
Q Consensus 254 ~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~---akID~~ 301 (340)
.+.+++....+++.+.||+.+|+|...+-+.|.+|...|-|. +.+|+.
T Consensus 14 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 14 KILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeeecccCChH
Confidence 345566666789999999999999999999999999999885 467755
No 219
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=78.02 E-value=15 Score=29.87 Aligned_cols=65 Identities=8% Similarity=-0.142 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhc-----cchhHHHhH----HHHHHHHHHhcCHHHHHhHHHHHHHHH
Q 019472 54 AHLAKSLFYIQIGDKEKALEQLKVTESKTV-----AVGQKMDLV----FYTLQLGFFYMDFDLISKSIDKAKSLF 119 (340)
Q Consensus 54 ~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~-----~~~~~i~~~----l~~i~~~i~~~~~~~~~~~i~ka~~~l 119 (340)
++..+|..+.+.|+|++|+..+.+..+.+. .++ ....+ .+.-.+....|+++.+...+.++-.+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 688999999999999999999999988610 121 22333 566666677899999999999998864
No 220
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=77.95 E-value=4.2 Score=35.31 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEE
Q 019472 241 PHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLET 307 (340)
Q Consensus 241 ~h~~~l~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~ 307 (340)
+....+++.||..++...+.|=..++...||+.||+|...|-+-|..|-.+|-+.- -+..|+.+.
T Consensus 26 s~~~~v~~~L~~~I~~g~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~--~~~~G~~V~ 90 (237)
T 3c7j_A 26 LARTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRV--ETHKGAVVA 90 (237)
T ss_dssp GHHHHHHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE--ETTTEEEEC
T ss_pred ccHHHHHHHHHHHHHhCCCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--eCCCceEEe
Confidence 44566899999999888999999999999999999999999999999999998753 355666544
No 221
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=77.62 E-value=9.6 Score=27.41 Aligned_cols=51 Identities=14% Similarity=0.240 Sum_probs=40.2
Q ss_pred HHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecC
Q 019472 250 VRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKV 301 (340)
Q Consensus 250 ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~ 301 (340)
.|.+++ .++.....++...+|+.+|++...+-+.|..|...|-+...-|..
T Consensus 25 ~~~~il-~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r 75 (99)
T 3cuo_A 25 KRLLIL-CMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQ 75 (99)
T ss_dssp HHHHHH-HHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred HHHHHH-HHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCC
Confidence 344444 444444579999999999999999999999999999997765544
No 222
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=77.55 E-value=8.7 Score=27.07 Aligned_cols=45 Identities=13% Similarity=0.082 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHH
Q 019472 49 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVF 93 (340)
Q Consensus 49 ~~ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l 93 (340)
+.-......+|+-+...|++++|+.++.+...-|..+...+.++-
T Consensus 14 e~~Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q 58 (73)
T 3ax2_A 14 QKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQ 58 (73)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445666788999999999999999999999989988887766554
No 223
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=77.54 E-value=33 Score=31.02 Aligned_cols=125 Identities=10% Similarity=0.023 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc---cchhHHHhHHHHHHHHHHhc--CHHHHHhHHHHHHHHHhcCCCh
Q 019472 51 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTV---AVGQKMDLVFYTLQLGFFYM--DFDLISKSIDKAKSLFEEGGDW 125 (340)
Q Consensus 51 ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~---~~~~~i~~~l~~i~~~i~~~--~~~~~~~~i~ka~~~l~~~~~~ 125 (340)
-..+...++.+|+..|+.+.|.+.+.++.+.-. ..+.-+-..+...-+.+..| ++..+...+.++ .+..++|
T Consensus 135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El---~~~~p~~ 211 (310)
T 3mv2_B 135 TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEEL---SQTFPTW 211 (310)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHH---HTTSCSH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHH---HHhCCCc
Confidence 355677889999999999999999998875432 11122222232233355555 777776666664 3334443
Q ss_pred hhhhHhhHHHHHhccccCCHHHHHHHHHhcc---ccCCcCc--cCCHhHHHHHHHHHHhhhc
Q 019472 126 ERKNRLKVYEGLYCMSTRNFKKAASLFLDSI---STFTTYE--LFPYDTFIFYTVLTSIISL 182 (340)
Q Consensus 126 ~~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~---~~f~~~e--~~~~~~~~~Y~~L~al~s~ 182 (340)
....- .+. .++..|+|.+|-..+-... +.+..-+ ...-.+.+..++.|+....
T Consensus 212 ~~~~l--Lln--~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lg 269 (310)
T 3mv2_B 212 KTQLG--LLN--LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQG 269 (310)
T ss_dssp HHHHH--HHH--HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTT
T ss_pred ccHHH--HHH--HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhC
Confidence 32221 122 6889999999988774322 2211100 1223456666666666554
No 224
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=77.41 E-value=8.3 Score=30.70 Aligned_cols=62 Identities=16% Similarity=0.076 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHH
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKA 115 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka 115 (340)
.+++.+|..+...|++++|.+.|.++.+...+.. .......+..+....|+++.+...+.++
T Consensus 109 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 109 ELACELAVQYNQVGRDEEALELLWNILKVNLGAQ-DGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT-TTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC-hHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 3455666666666666666666666554332110 0123334445555556655555544443
No 225
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=77.28 E-value=7.7 Score=36.10 Aligned_cols=97 Identities=4% Similarity=-0.080 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHhCC-HHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhH
Q 019472 52 REAHLAKSLFYIQIGD-KEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNR 130 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd-~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~ 130 (340)
-.++..+|..+...|+ +++|++.+.++.+.... -.+.+...-.+....|++..+...+.++-.. +|.. ..
T Consensus 131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~---~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l-----dP~~-~~ 201 (382)
T 2h6f_A 131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK---NYQVWHHRRVLVEWLRDPSQELEFIADILNQ-----DAKN-YH 201 (382)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-----CTTC-HH
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CccC-HH
Confidence 4467889999999996 99999999998865432 2344555556666779999999888887664 2211 11
Q ss_pred hhHHHHHhccccCCHHHHHHHHHhccc
Q 019472 131 LKVYEGLYCMSTRNFKKAASLFLDSIS 157 (340)
Q Consensus 131 l~~~~gl~~l~~r~y~~Aa~~F~e~~~ 157 (340)
.....|..+...++|.+|...|-.++.
T Consensus 202 a~~~lg~~~~~~g~~~eAl~~~~~al~ 228 (382)
T 2h6f_A 202 AWQHRQWVIQEFKLWDNELQYVDQLLK 228 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 224456666677888888888877653
No 226
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=76.87 E-value=11 Score=28.93 Aligned_cols=49 Identities=10% Similarity=-0.026 Sum_probs=41.1
Q ss_pred HhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEE
Q 019472 257 QFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVL 305 (340)
Q Consensus 257 q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l 305 (340)
.++.....++.+.+|+.+|++...+-..|.+|...|-+.-.-|..++..
T Consensus 43 ~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~ 91 (142)
T 2fbi_A 43 RILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRR 91 (142)
T ss_dssp HHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCCe
Confidence 3333356799999999999999999999999999999988877776653
No 227
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=76.77 E-value=3.8 Score=33.77 Aligned_cols=48 Identities=15% Similarity=0.246 Sum_probs=40.1
Q ss_pred HHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccc---eEEecC
Q 019472 254 VYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH---CKIDKV 301 (340)
Q Consensus 254 ~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~---akID~~ 301 (340)
.+.+.+....+++...||+.+|+|...+-+.|.+|...|.|. +.+|+.
T Consensus 31 ~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~a~vd~~ 81 (171)
T 2e1c_A 31 KIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPE 81 (171)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeeEEECHH
Confidence 345555556789999999999999999999999999999884 467764
No 228
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=76.60 E-value=20 Score=33.81 Aligned_cols=90 Identities=17% Similarity=0.004 Sum_probs=41.5
Q ss_pred HHHHHHHHHHH----hCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHH----hcCHHHHHhHHHHHHHHHhcCCCh
Q 019472 54 AHLAKSLFYIQ----IGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF----YMDFDLISKSIDKAKSLFEEGGDW 125 (340)
Q Consensus 54 ~~~~La~~~~~----~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~----~~~~~~~~~~i~ka~~~l~~~~~~ 125 (340)
+.+.||.+|.. .+|+++|.++|.+..+.- ..+....+-.+... .+|+..+...+.++-.. +++
T Consensus 77 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~ 147 (490)
T 2xm6_A 77 AEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----GRD 147 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCH
Confidence 45555555555 555555555555544321 11222333333333 34555555555554321 222
Q ss_pred hhhhHhhHHHHHhccc----cCCHHHHHHHHHhcc
Q 019472 126 ERKNRLKVYEGLYCMS----TRNFKKAASLFLDSI 156 (340)
Q Consensus 126 ~~~~~l~~~~gl~~l~----~r~y~~Aa~~F~e~~ 156 (340)
... ..-|.++.. .+++.+|..+|-.+.
T Consensus 148 ~a~----~~Lg~~y~~g~g~~~d~~~A~~~~~~a~ 178 (490)
T 2xm6_A 148 SGQ----QSMGDAYFEGDGVTRDYVMAREWYSKAA 178 (490)
T ss_dssp HHH----HHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 211 112333333 566777777776654
No 229
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=76.32 E-value=13 Score=28.35 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=38.8
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCE
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 304 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~ 304 (340)
...++.+.+|+.+|++...+-+.|.+|...|-+.-.-|..++.
T Consensus 50 ~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R 92 (140)
T 2nnn_A 50 TGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGR 92 (140)
T ss_dssp HSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCC
Confidence 4589999999999999999999999999999998887776664
No 230
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=76.27 E-value=6.9 Score=30.96 Aligned_cols=47 Identities=9% Similarity=0.224 Sum_probs=40.0
Q ss_pred HHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccce---EEecC
Q 019472 255 YSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC---KIDKV 301 (340)
Q Consensus 255 l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~a---kID~~ 301 (340)
+.+.+....+++...||+.+|+|...+-+.+.+|...|-|.. .+|+.
T Consensus 8 il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 8 ILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp HHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEeecCHH
Confidence 445666567899999999999999999999999999998864 67764
No 231
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=75.85 E-value=3.4 Score=29.94 Aligned_cols=41 Identities=5% Similarity=0.024 Sum_probs=35.5
Q ss_pred HHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccce
Q 019472 255 YSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC 296 (340)
Q Consensus 255 l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~a 296 (340)
|++++..-. ++...||+.+|+|...+-+.|-+|-.+|.|..
T Consensus 22 IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 22 AIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp HHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEE
T ss_pred HHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 346666544 99999999999999999999999999998865
No 232
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=75.51 E-value=7.9 Score=30.61 Aligned_cols=56 Identities=20% Similarity=0.145 Sum_probs=44.1
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHhhCCccce--EEecCCCEEEEcCCCcchHHHHHHH
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC--KIDKVAGVLETNRPDAKNALYQATI 321 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~a--kID~~~g~l~~~~~~~r~~~y~~~l 321 (340)
.-.+.+.||+.+|+++.++.+.|.+|+..|-|.= +.|..++....++-+ ..|++..
T Consensus 50 ~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~---pL~ekL~ 107 (135)
T 2v79_A 50 YFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQ---PLWGKLY 107 (135)
T ss_dssp CSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECH---HHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHH---HHHHHHH
Confidence 4578999999999999999999999999998864 667776666666543 3555543
No 233
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=75.33 E-value=12 Score=27.01 Aligned_cols=57 Identities=9% Similarity=0.188 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEE
Q 019472 248 REVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLE 306 (340)
Q Consensus 248 ~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~ 306 (340)
+..|.+++. ++.- ..++...+|+.+|++...+-+.|..|...|-+..+-+.......
T Consensus 22 ~~~r~~Il~-~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~ 78 (98)
T 3jth_A 22 NERRLQILC-MLHN-QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYT 78 (98)
T ss_dssp SHHHHHHHH-HTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEE
T ss_pred CHHHHHHHH-HHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEE
Confidence 344555444 4443 68999999999999999999999999999999877554433333
No 234
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=75.10 E-value=30 Score=32.48 Aligned_cols=91 Identities=15% Similarity=0.080 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHH----hcCHHHHHhHHHHHHHHHhcCCC
Q 019472 53 EAHLAKSLFYIQ----IGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF----YMDFDLISKSIDKAKSLFEEGGD 124 (340)
Q Consensus 53 ~~~~~La~~~~~----~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~----~~~~~~~~~~i~ka~~~l~~~~~ 124 (340)
.+...||.+|.. .+|+++|.+.|.+..+.. ..+....+-.++.. .+|+..+...+.++-.. ++
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~ 182 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----GN 182 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC
Confidence 345566666666 566666666666554321 12333333344443 45555555555554331 22
Q ss_pred hhhhhHhhHHHHHhccc----cCCHHHHHHHHHhcc
Q 019472 125 WERKNRLKVYEGLYCMS----TRNFKKAASLFLDSI 156 (340)
Q Consensus 125 ~~~~~~l~~~~gl~~l~----~r~y~~Aa~~F~e~~ 156 (340)
+... ..-|.++.. .+++.+|..+|-.+.
T Consensus 183 ~~a~----~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 214 (490)
T 2xm6_A 183 VWSC----NQLGYMYSRGLGVERNDAISAQWYRKSA 214 (490)
T ss_dssp HHHH----HHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHhcCCCCCcCHHHHHHHHHHHH
Confidence 2211 122333333 566666666666553
No 235
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=74.51 E-value=9.8 Score=28.87 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEec
Q 019472 244 RYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDK 300 (340)
Q Consensus 244 ~~l~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~ 300 (340)
..|-+..|.+++.-+. -..++...||+.+|++...+-+.|..|...|-+..+-+.
T Consensus 13 ~al~~~~R~~Il~~L~--~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~g 67 (118)
T 3f6o_A 13 QALADPTRRAVLGRLS--RGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQG 67 (118)
T ss_dssp HHHTSHHHHHHHHHHH--TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHhCCHHHHHHHHHHH--hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecC
Confidence 4444556666554443 256899999999999999999999999999999887774
No 236
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=74.49 E-value=15 Score=27.34 Aligned_cols=43 Identities=9% Similarity=0.132 Sum_probs=39.2
Q ss_pred hccccHHHHHHHh-CCChHHHHHHHHHHhhCCccceEEecCCCE
Q 019472 262 YKSVTIEAMAKAF-GVTVEFIDVELSRFIAAGKLHCKIDKVAGV 304 (340)
Q Consensus 262 Ys~I~l~~mA~~~-g~~~~~vE~~L~~lI~~g~l~akID~~~g~ 304 (340)
....++..+|+.+ |++...+-+.|.+|...|-|..+.|..++.
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r 68 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPP 68 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSC
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCC
Confidence 4678999999999 999999999999999999999988877664
No 237
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=74.44 E-value=7.9 Score=28.12 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceE
Q 019472 247 MREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCK 297 (340)
Q Consensus 247 ~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~ak 297 (340)
.+..|.+++..+ ...++...||+.+|++...+-+.|..|...|-+...
T Consensus 29 ~~~~r~~Il~~L---~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~ 76 (96)
T 1y0u_A 29 TNPVRRKILRML---DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERV 76 (96)
T ss_dssp SCHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 334454444433 356899999999999999999999999999998653
No 238
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=74.30 E-value=6.5 Score=31.22 Aligned_cols=47 Identities=17% Similarity=0.293 Sum_probs=39.5
Q ss_pred HHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccc---eEEecC
Q 019472 255 YSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH---CKIDKV 301 (340)
Q Consensus 255 l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~---akID~~ 301 (340)
+..++.....++...||+.+|+|...+-+.|.+|...|-|. +.+|+.
T Consensus 12 iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 12 LVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPE 61 (150)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEeccChh
Confidence 44555556789999999999999999999999999999884 456765
No 239
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=74.19 E-value=15 Score=28.00 Aligned_cols=43 Identities=14% Similarity=0.129 Sum_probs=38.9
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCE
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 304 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~ 304 (340)
...++...+|+.+|++...+-+.+.+|...|-+.-..|..++.
T Consensus 46 ~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R 88 (138)
T 1jgs_A 46 AACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKR 88 (138)
T ss_dssp HSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSS
T ss_pred cCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCc
Confidence 4678999999999999999999999999999998888877764
No 240
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=74.02 E-value=4.2 Score=31.85 Aligned_cols=42 Identities=14% Similarity=0.233 Sum_probs=36.5
Q ss_pred HHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccce
Q 019472 255 YSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC 296 (340)
Q Consensus 255 l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~a 296 (340)
+...+....+++.+.||+.+|+|...+-+.+.+|...|-+..
T Consensus 9 il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 9 ILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEec
Confidence 445666667899999999999999999999999999998853
No 241
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=73.96 E-value=16 Score=28.06 Aligned_cols=48 Identities=15% Similarity=0.026 Sum_probs=41.1
Q ss_pred hhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEE
Q 019472 258 FLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVL 305 (340)
Q Consensus 258 ~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l 305 (340)
++.....++...+|+.+|++...+-..+.+|...|-+.-.-|..++..
T Consensus 41 ~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r~ 88 (145)
T 2a61_A 41 KIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRA 88 (145)
T ss_dssp HHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCce
Confidence 333356799999999999999999999999999999998888777653
No 242
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=73.58 E-value=4.3 Score=32.39 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=39.3
Q ss_pred HHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccc---eEEecC
Q 019472 255 YSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH---CKIDKV 301 (340)
Q Consensus 255 l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~---akID~~ 301 (340)
+...+....+++...+|+.+|+|...+-+.+.+|...|.|. +.+|+.
T Consensus 12 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (151)
T 2cyy_A 12 IIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPE 61 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCCGG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECHH
Confidence 44555556789999999999999999999999999999884 456753
No 243
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=73.48 E-value=12 Score=27.11 Aligned_cols=44 Identities=14% Similarity=0.317 Sum_probs=36.3
Q ss_pred ccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEc
Q 019472 265 VTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 308 (340)
Q Consensus 265 I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~ 308 (340)
++...||+.+|++...+-+.|.+|...|-|...-|.....+..+
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT 74 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLT 74 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEC
Confidence 99999999999999999999999999999944445444455554
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.36 E-value=16 Score=34.82 Aligned_cols=75 Identities=12% Similarity=0.026 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh----ccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKT----VAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWE 126 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~----~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~ 126 (340)
....+.-..+|+..||+..|-..+.+++... ..+..+..++....+++...++|..+-.++-.+-......+++.
T Consensus 177 ve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~ 255 (445)
T 4b4t_P 177 IQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEA 255 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHH
Confidence 3446778889999999999999999876432 34456778888899999999999999888887766554445544
No 245
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=72.95 E-value=22 Score=26.91 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=42.1
Q ss_pred HhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEE
Q 019472 257 QFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLE 306 (340)
Q Consensus 257 q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~ 306 (340)
.++.....++.+.+|+.+|++...+-+.+.+|...|-+.-.-|..++...
T Consensus 36 ~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~ 85 (138)
T 3bpv_A 36 LRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRY 85 (138)
T ss_dssp HHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred HHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCceeE
Confidence 33444577999999999999999999999999999999988887776543
No 246
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=72.76 E-value=16 Score=28.05 Aligned_cols=47 Identities=15% Similarity=0.082 Sum_probs=40.4
Q ss_pred HHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCC
Q 019472 256 SQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 303 (340)
Q Consensus 256 ~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g 303 (340)
..++. ...++.+.+|+.+|++...+-..|.+|...|-+.-.-|..++
T Consensus 43 L~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 89 (146)
T 2gxg_A 43 LRATS-DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDR 89 (146)
T ss_dssp HHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCC
Confidence 34444 678999999999999999999999999999999887776554
No 247
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=72.70 E-value=6.7 Score=28.53 Aligned_cols=31 Identities=6% Similarity=-0.184 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKT 82 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~ 82 (340)
.++..-||..+++.|+|.+|.+.++++.+..
T Consensus 43 ~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 43 EAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4566677888888888888888888877544
No 248
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=72.63 E-value=10 Score=30.19 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=40.9
Q ss_pred hhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCE
Q 019472 258 FLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 304 (340)
Q Consensus 258 ~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~ 304 (340)
++.....++...||+.+|++...+-+.|.+|...|-|.-.-|..++-
T Consensus 54 ~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR 100 (162)
T 3k0l_A 54 VLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGR 100 (162)
T ss_dssp HHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSC
T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCC
Confidence 33335679999999999999999999999999999999888877764
No 249
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=72.33 E-value=16 Score=28.21 Aligned_cols=43 Identities=9% Similarity=0.034 Sum_probs=36.8
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCE
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 304 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~ 304 (340)
...++...+|+.+|++...+-..|.+|...|-+.-.-|..++.
T Consensus 54 ~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R 96 (150)
T 2rdp_A 54 EGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRR 96 (150)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCcc
Confidence 4679999999999999999999999999999998877776654
No 250
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=72.31 E-value=27 Score=28.63 Aligned_cols=44 Identities=11% Similarity=0.142 Sum_probs=40.2
Q ss_pred hhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCE
Q 019472 261 SYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 304 (340)
Q Consensus 261 pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~ 304 (340)
|...++.+.||+.+|++...+-..|.+|...|-|.-.-|+.++-
T Consensus 54 ~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR 97 (189)
T 3nqo_A 54 PEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKR 97 (189)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSS
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCCC
Confidence 46689999999999999999999999999999999888887764
No 251
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=72.22 E-value=18 Score=27.81 Aligned_cols=87 Identities=17% Similarity=0.036 Sum_probs=54.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHH----hcCHHHHHhHHHHHHHHHhcCCChhhhhHhhH
Q 019472 58 KSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF----YMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 133 (340)
Q Consensus 58 La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~----~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~~ 133 (340)
||.+|...+..++|.++|.+.-+.- -.+.+..+-.++.. .+|+..+..++.+|-.. +++.-. .
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g-----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----g~~~a~----~ 97 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN-----SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL----NDQDGC----L 97 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TCHHHH----H
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----CCHHHH----H
Confidence 7888888788888888887766531 12344444455554 57788888888777553 233322 2
Q ss_pred HHHHhccc----cCCHHHHHHHHHhccc
Q 019472 134 YEGLYCMS----TRNFKKAASLFLDSIS 157 (340)
Q Consensus 134 ~~gl~~l~----~r~y~~Aa~~F~e~~~ 157 (340)
.-|.++.. .+|+.+|..+|-.+..
T Consensus 98 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 98 ILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 22444444 7888888888776654
No 252
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=72.17 E-value=14 Score=28.45 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=39.3
Q ss_pred hhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCE
Q 019472 259 LESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 304 (340)
Q Consensus 259 i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~ 304 (340)
+.....++.+.+|+.+|++...+-..+.+|...|-+.-.-|+.++.
T Consensus 38 l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~R 83 (144)
T 1lj9_A 38 VCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKK 83 (144)
T ss_dssp HHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTT
T ss_pred HHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCc
Confidence 3334579999999999999999999999999999998887766553
No 253
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=71.90 E-value=24 Score=25.38 Aligned_cols=52 Identities=10% Similarity=0.094 Sum_probs=41.3
Q ss_pred HhhhhhccccHHHH----HHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEc
Q 019472 257 QFLESYKSVTIEAM----AKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 308 (340)
Q Consensus 257 q~i~pYs~I~l~~m----A~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~ 308 (340)
.++.....++...| |+.+|++...+-+.|.+|...|-+.-..|.....+..+
T Consensus 15 ~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT 70 (99)
T 1tbx_A 15 AYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLT 70 (99)
T ss_dssp HHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC
T ss_pred HHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEEC
Confidence 33333567889999 99999999999999999999999988888744444443
No 254
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=71.87 E-value=10 Score=32.12 Aligned_cols=64 Identities=13% Similarity=0.109 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEc
Q 019472 243 FRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 308 (340)
Q Consensus 243 ~~~l~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~ 308 (340)
.+.+++.|+..++..-+.|=+.+.-..||+.||+|...|-.-|..|-.+|-+.. -+..|+.+..
T Consensus 18 ~~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~--~~~~G~~V~~ 81 (222)
T 3ihu_A 18 SDTVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDL--QRHRGAVIRR 81 (222)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--CSTTCEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--ecCCCeEEec
Confidence 467888999999999999999999999999999999999999999999998854 3666776654
No 255
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A
Probab=71.75 E-value=2 Score=33.34 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEe
Q 019472 247 MREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKID 299 (340)
Q Consensus 247 ~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID 299 (340)
.+..|..++.+++.|=-+=.|++|+-.=-=-...||..|.+|...|+|.++||
T Consensus 35 ~ee~r~~iL~qiLtpeAreRL~rI~lVKPEkA~~VE~~LI~lAq~Gqi~~kIt 87 (118)
T 2cru_A 35 EAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVS 87 (118)
T ss_dssp HHHHHHHHHHHHBCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTCCCSCBC
T ss_pred HHHHHHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 44667788899999977777777765322233589999999999999999886
No 256
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=71.70 E-value=16 Score=28.12 Aligned_cols=50 Identities=14% Similarity=0.212 Sum_probs=36.2
Q ss_pred HHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEE
Q 019472 255 YSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVL 305 (340)
Q Consensus 255 l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l 305 (340)
+..++.... ++.+.+|+.+|++...+-..|.+|...|-+.-.-|+.++..
T Consensus 43 iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~ 92 (146)
T 3tgn_A 43 ILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDARV 92 (146)
T ss_dssp HHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------
T ss_pred HHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCce
Confidence 344555566 99999999999999999999999999999988887666653
No 257
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=71.64 E-value=4.6 Score=28.95 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=39.5
Q ss_pred HHHHHHHHhhhhhccccHHHHHHHhCCChH-HHHHHHHHHhhCCccc
Q 019472 250 VRTVVYSQFLESYKSVTIEAMAKAFGVTVE-FIDVELSRFIAAGKLH 295 (340)
Q Consensus 250 ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~-~vE~~L~~lI~~g~l~ 295 (340)
.+.+ +.+|+.-....+...||+.+|++.. .|-+.|..|=.+|.+.
T Consensus 12 ~~~~-IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 12 IKEK-ICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVY 57 (79)
T ss_dssp HHHH-HHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEE
T ss_pred HHHH-HHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEE
Confidence 3444 4488888888999999999999999 9999999999999997
No 258
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=71.29 E-value=25 Score=38.86 Aligned_cols=45 Identities=9% Similarity=0.068 Sum_probs=34.3
Q ss_pred ccchhHHHHhhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 019472 36 LSRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTES 80 (340)
Q Consensus 36 ~~~l~~~~~n~~~~~ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~ 80 (340)
..+.+++...+.+..--.++.++|..+.+.|+|++|.++|...++
T Consensus 1118 ~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk 1162 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARK 1162 (1630)
T ss_pred CCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666665555566788899999999999999999977664
No 259
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=71.21 E-value=4.9 Score=32.15 Aligned_cols=57 Identities=14% Similarity=0.168 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHH
Q 019472 55 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDK 114 (340)
Q Consensus 55 ~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~k 114 (340)
.+.+|..+.+.|++++|...|.+..+.... -.+....+..+.+..|++..+...+.+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~~~~~g~~~~A~~~~~~ 65 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS---RGDVKLAKADCLLETKQFELAQELLAT 65 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT---SHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344555666666666666655554432211 123344444555555555555544444
No 260
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=70.99 E-value=18 Score=23.71 Aligned_cols=51 Identities=14% Similarity=0.217 Sum_probs=38.7
Q ss_pred HHHHHHHHhhhhhccccHHHHHHHh-----CCChHHHHHHHHHHhhCCccceEEecCCCEE
Q 019472 250 VRTVVYSQFLESYKSVTIEAMAKAF-----GVTVEFIDVELSRFIAAGKLHCKIDKVAGVL 305 (340)
Q Consensus 250 ir~~~l~q~i~pYs~I~l~~mA~~~-----g~~~~~vE~~L~~lI~~g~l~akID~~~g~l 305 (340)
-|...+..++..-..++.+.+++.| ++|...|-+.|.++ |.+ ++...+|..
T Consensus 5 ~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l---g~v--~~~~~~~~~ 60 (64)
T 2p5k_A 5 QRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL---HLV--KVPTNNGSY 60 (64)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH---TCE--EEEETTTEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc---CCE--EEecCCCce
Confidence 3555667777767789999999999 99999999999843 555 555555543
No 261
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=70.59 E-value=5.2 Score=33.69 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCC
Q 019472 247 MREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAG 292 (340)
Q Consensus 247 ~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g 292 (340)
..+=|.+.|.+++.-...|+.+.+|+.||+|++.+-+.|.+|=.-+
T Consensus 9 ~k~eR~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~ 54 (190)
T 4a0z_A 9 KKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPE 54 (190)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcCcc
Confidence 3455778889999999999999999999999999999998775444
No 262
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=70.54 E-value=7.3 Score=29.17 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecC
Q 019472 248 REVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKV 301 (340)
Q Consensus 248 ~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~ 301 (340)
+..|.+++..+.. ..++...||+.+|++...+-+.|..|...|-+..+-|..
T Consensus 24 ~~~r~~IL~~L~~--~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr 75 (108)
T 2kko_A 24 NGRRLQILDLLAQ--GERAVEAIATATGMNLTTASANLQALKSGGLVEARREGT 75 (108)
T ss_dssp TSTTHHHHHHHTT--CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETT
T ss_pred CHHHHHHHHHHHc--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3344444443332 578999999999999999999999999999998765543
No 263
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=70.31 E-value=25 Score=26.84 Aligned_cols=44 Identities=16% Similarity=0.069 Sum_probs=38.5
Q ss_pred hhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCC
Q 019472 260 ESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 303 (340)
Q Consensus 260 ~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g 303 (340)
.....++.+.+|+.+|++...+-+.+.+|...|-+.-.-|..++
T Consensus 48 ~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~ 91 (146)
T 2fbh_A 48 RHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDR 91 (146)
T ss_dssp HCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTB
T ss_pred HcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCccc
Confidence 45678999999999999999999999999999999877765554
No 264
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=70.22 E-value=12 Score=28.56 Aligned_cols=47 Identities=11% Similarity=0.154 Sum_probs=39.7
Q ss_pred hhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCE
Q 019472 258 FLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 304 (340)
Q Consensus 258 ~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~ 304 (340)
++.....++.+.+|+.+|++...+-+.|.+|...|-+.-.-|..++.
T Consensus 41 ~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r 87 (139)
T 3bja_A 41 VLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQR 87 (139)
T ss_dssp HHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTT
T ss_pred HHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCCc
Confidence 33335679999999999999999999999999999998777766653
No 265
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=70.20 E-value=12 Score=32.67 Aligned_cols=62 Identities=11% Similarity=0.162 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhccc-cHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEcC
Q 019472 243 FRYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNR 309 (340)
Q Consensus 243 ~~~l~~~ir~~~l~q~i~pYs~I-~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~ 309 (340)
...+.+.|+.++. . +.|=..+ +-..||+.||+|...+-+-|..|..+|-|.- +..|+.+...
T Consensus 16 y~~i~~~l~~~I~-~-~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~---~g~Gt~V~~~ 78 (248)
T 3f8m_A 16 HQVVRAELDRMLD-G-MRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER---RGRTTVVARP 78 (248)
T ss_dssp HHHHHHHHHHHHH-H-CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE---ETTEEEECCC
T ss_pred HHHHHHHHHHHHh-C-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe---CCCEEEEccC
Confidence 4567788887777 6 8898999 9999999999999999999999999999865 7788877653
No 266
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=70.03 E-value=7.5 Score=32.96 Aligned_cols=64 Identities=9% Similarity=0.198 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEc
Q 019472 243 FRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 308 (340)
Q Consensus 243 ~~~l~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~ 308 (340)
.+.+++.|+..++..-+.|=..++-..||+.||+|...|-.-|..|-.+|-+.-+ +..|+.+..
T Consensus 14 ~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~--~~~G~~V~~ 77 (218)
T 3sxy_A 14 RTKVYNLLKEMILNHELKLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVV--PRVGFFVTD 77 (218)
T ss_dssp CHHHHHHHHHHHHTTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE--TTTEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--CCCceEEcC
Confidence 3577888999999889999999999999999999999999999999999998544 666776654
No 267
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=70.00 E-value=21 Score=26.29 Aligned_cols=50 Identities=6% Similarity=0.101 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEec
Q 019472 249 EVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDK 300 (340)
Q Consensus 249 ~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~ 300 (340)
..|.+++..+ . -..+++..+|+.+|++...+-+.|..|...|-+..+-+.
T Consensus 26 ~~r~~IL~~L-~-~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~g 75 (106)
T 1r1u_A 26 YNRIRIMELL-S-VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQG 75 (106)
T ss_dssp HHHHHHHHHH-H-HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHHH-H-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3444444333 2 356899999999999999999999999999999876553
No 268
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=69.79 E-value=20 Score=26.09 Aligned_cols=61 Identities=10% Similarity=0.189 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEc
Q 019472 246 YMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 308 (340)
Q Consensus 246 l~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~ 308 (340)
+-+..|.+++..+.. ...+...+|+.+|++...+-+.|..|...|-+..+-+.........
T Consensus 20 l~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~ 80 (102)
T 3pqk_A 20 LSHPVRLMLVCTLVE--GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLT 80 (102)
T ss_dssp HCSHHHHHHHHHHHT--CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEEC
T ss_pred cCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEC
Confidence 334445554444432 4589999999999999999999999999999987766554444444
No 269
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=69.48 E-value=0.88 Score=32.91 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=36.1
Q ss_pred HHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEe
Q 019472 251 RTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKID 299 (340)
Q Consensus 251 r~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID 299 (340)
|..++.|++.|=.+=.|++++-.=-=-.+.||..|.+|...|+|.++||
T Consensus 7 r~~iL~qiL~~eAreRL~rI~lvKPe~A~~VE~~Li~lAq~Gqi~~ki~ 55 (81)
T 2fh0_A 7 VGAAIANFLEPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKIT 55 (81)
T ss_dssp SSHHHHTTBCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTCCSCCBC
T ss_pred HHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 3446778888877777777664322233589999999999999999886
No 270
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=69.10 E-value=18 Score=27.65 Aligned_cols=67 Identities=4% Similarity=0.009 Sum_probs=48.9
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCE---EEEcCCCcchHHHHHHHHhhHHHHHHH
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV---LETNRPDAKNALYQATIKQGDFLLNRI 331 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~---l~~~~~~~r~~~y~~~l~~~~~l~~ri 331 (340)
..++.+.+|+.+|++...+-+.|.+|...|-|.-+-|+.++- |..+ +.-...++++....+.++..+
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT--~~G~~~~~~~~~~~~~~~~~~ 121 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVN--AQQRKKIESLLSRVNKRITEA 121 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECC--SHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEEC--HHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999999999998777766653 3333 333445555555544444433
No 271
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=69.07 E-value=14 Score=32.06 Aligned_cols=65 Identities=18% Similarity=0.250 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhccc-cHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEcC
Q 019472 243 FRYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNR 309 (340)
Q Consensus 243 ~~~l~~~ir~~~l~q~i~pYs~I-~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~ 309 (340)
...+.+.++.++...-+.|=..+ +...||+.||+|...+-+-|..|..+|-|.. -+..|+.+...
T Consensus 12 ~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~--~~g~G~~V~~~ 77 (243)
T 2wv0_A 12 YYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYR--LKGRGTFVSKP 77 (243)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--CTTSCEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE--eCCCeEEEeCC
Confidence 45677788887777778888899 8999999999999999999999999999864 36668777543
No 272
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=69.04 E-value=6 Score=29.24 Aligned_cols=35 Identities=29% Similarity=0.521 Sum_probs=28.8
Q ss_pred HHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHH
Q 019472 251 RTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELS 286 (340)
Q Consensus 251 r~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~ 286 (340)
|...+.+++.+.. +++..+|+.+|+|...+-+.|.
T Consensus 8 R~~~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L~ 42 (93)
T 2l0k_A 8 RTIKIGKYIVETK-KTVRVIAKEFGVSKSTVHKDLT 42 (93)
T ss_dssp HHHHHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHc
Confidence 5566778887766 9999999999999998877664
No 273
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=68.98 E-value=15 Score=28.11 Aligned_cols=42 Identities=17% Similarity=0.054 Sum_probs=36.8
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCE
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 304 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~ 304 (340)
..++.+.+|+.+|++...+-..+.+|...|-|.-.-|..++-
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R 87 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTR 87 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--C
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCCC
Confidence 489999999999999999999999999999998887777664
No 274
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=68.96 E-value=28 Score=28.56 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=36.4
Q ss_pred cccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEcCC
Q 019472 264 SVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 310 (340)
Q Consensus 264 ~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~~ 310 (340)
.++-+.||..+|++.+.+-+.+.+|-.+|-|. ...|.|.+.++
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d~ 211 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVK----LSRGKITILDS 211 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEESCH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----eCCCEEEEeCH
Confidence 67889999999999999999999999999874 34677777643
No 275
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=68.54 E-value=20 Score=27.97 Aligned_cols=47 Identities=11% Similarity=0.178 Sum_probs=39.5
Q ss_pred hhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCE
Q 019472 258 FLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 304 (340)
Q Consensus 258 ~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~ 304 (340)
++.....++...+|+.+|++...+-+.|.+|...|-|.-.-|..++.
T Consensus 52 ~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R 98 (154)
T 2eth_A 52 YVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRR 98 (154)
T ss_dssp HHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSS
T ss_pred HHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCcc
Confidence 33334579999999999999999999999999999998877666553
No 276
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=68.52 E-value=15 Score=28.09 Aligned_cols=47 Identities=13% Similarity=0.046 Sum_probs=39.9
Q ss_pred HhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCC
Q 019472 257 QFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 303 (340)
Q Consensus 257 q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g 303 (340)
.++.....++.+.+|+.+|++...+-+.+.+|...|-+.-.-|..++
T Consensus 38 ~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~ 84 (142)
T 3bdd_A 38 QTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQ 84 (142)
T ss_dssp HHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSST
T ss_pred HHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCC
Confidence 33344567999999999999999999999999999999887776555
No 277
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=68.51 E-value=7.6 Score=30.08 Aligned_cols=48 Identities=2% Similarity=0.122 Sum_probs=31.6
Q ss_pred hhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEE
Q 019472 258 FLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVL 305 (340)
Q Consensus 258 ~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l 305 (340)
++.....++.+.+|+.+|++...+-..+.+|...|-|.-.-|..++..
T Consensus 45 ~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~ 92 (142)
T 3ech_A 45 LIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRS 92 (142)
T ss_dssp HHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC---------
T ss_pred HHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCCCe
Confidence 333345799999999999999999999999999999988777776643
No 278
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=68.17 E-value=15 Score=28.61 Aligned_cols=48 Identities=15% Similarity=0.139 Sum_probs=39.8
Q ss_pred HHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCC
Q 019472 256 SQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 303 (340)
Q Consensus 256 ~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g 303 (340)
..++.....++...||+.+|++...+-..|.+|...|-+.-.-|..++
T Consensus 46 L~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~ 93 (152)
T 3bj6_A 46 LEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHA 93 (152)
T ss_dssp HHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSST
T ss_pred HHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccc
Confidence 334444568999999999999999999999999999999877665554
No 279
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=68.06 E-value=9.8 Score=29.42 Aligned_cols=49 Identities=6% Similarity=0.003 Sum_probs=37.7
Q ss_pred HHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCE
Q 019472 256 SQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 304 (340)
Q Consensus 256 ~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~ 304 (340)
..++.-...++.+.+|+.+|++...+-+.+.+|...|-+.-.-|+.++.
T Consensus 42 L~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R 90 (140)
T 3hsr_A 42 LMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDER 90 (140)
T ss_dssp HHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC------
T ss_pred HHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCcc
Confidence 3444446789999999999999999999999999999998877766653
No 280
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=67.88 E-value=14 Score=28.65 Aligned_cols=47 Identities=6% Similarity=0.123 Sum_probs=34.7
Q ss_pred hhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCE
Q 019472 258 FLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 304 (340)
Q Consensus 258 ~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~ 304 (340)
++.....++.+.+|+.+|++...+-+.|.+|...|-+.-.-|..++.
T Consensus 48 ~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R 94 (148)
T 3nrv_A 48 VLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKR 94 (148)
T ss_dssp HHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--------
T ss_pred HHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcc
Confidence 33345689999999999999999999999999999998776665553
No 281
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=67.80 E-value=15 Score=25.87 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVA 84 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~ 84 (340)
..++..+|..|...|++++|.+.+.+..+...+
T Consensus 38 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 38 PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 355788999999999999999999998876543
No 282
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=67.79 E-value=19 Score=27.74 Aligned_cols=42 Identities=19% Similarity=0.111 Sum_probs=34.7
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCC
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 303 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g 303 (340)
...++.+.+|+.+|++...+-..|.+|...|-+.-.-|..++
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~ 89 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDG 89 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC-----
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCC
Confidence 578999999999999999999999999999999877665554
No 283
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=67.79 E-value=18 Score=28.48 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=38.0
Q ss_pred hhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCE
Q 019472 258 FLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 304 (340)
Q Consensus 258 ~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~ 304 (340)
++.....++...+|+.+|++...+-+.|.+|...|-|.-.-|..++.
T Consensus 60 ~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R 106 (162)
T 3cjn_A 60 ILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQR 106 (162)
T ss_dssp HHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCS
T ss_pred HHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCCC
Confidence 33335679999999999999999999999999999998776655543
No 284
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=67.43 E-value=16 Score=29.58 Aligned_cols=46 Identities=9% Similarity=0.216 Sum_probs=36.8
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEc
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 308 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~ 308 (340)
..++.+.||+.+|+|+..+++.+.+|-..|-+..+=...-|..-..
T Consensus 43 ~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar 88 (159)
T 3lwf_A 43 GPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNG 88 (159)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECS
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEecC
Confidence 4699999999999999999999999999999876633333443333
No 285
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=67.25 E-value=35 Score=26.03 Aligned_cols=46 Identities=7% Similarity=0.009 Sum_probs=36.6
Q ss_pred hhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCC
Q 019472 258 FLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 303 (340)
Q Consensus 258 ~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g 303 (340)
++.....++.+.+|+.+|++...+-+.+.+|...|-|.-.-|+.++
T Consensus 45 ~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~ 90 (143)
T 3oop_A 45 GIEANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDR 90 (143)
T ss_dssp HHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----C
T ss_pred HHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccC
Confidence 3333478999999999999999999999999999999877765554
No 286
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=67.16 E-value=32 Score=32.67 Aligned_cols=98 Identities=9% Similarity=-0.071 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhh
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 132 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~ 132 (340)
.....+|.++.+.|++++|.++|.++.+... ..-...+....++....|++..+...+.+|-.. +|. ...+.
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-----~~~-~~~~~ 393 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLAIED--IDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-----ART-RHHVY 393 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----TTC-CTHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCccc--cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----cCC-chHHH
Confidence 3467889999999999999999999887432 111134455555555667777777777776542 111 11111
Q ss_pred HHHHHh-ccccCCHHHHHHHHHhcccc
Q 019472 133 VYEGLY-CMSTRNFKKAASLFLDSIST 158 (340)
Q Consensus 133 ~~~gl~-~l~~r~y~~Aa~~F~e~~~~ 158 (340)
...|.+ +...|++..|...|-.++..
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKK 420 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 222222 22478999998888777554
No 287
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=67.05 E-value=23 Score=28.31 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=38.7
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCE
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 304 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~ 304 (340)
...++.+.||+.+|++...+-+.|.+|...|-|.-.-|..++.
T Consensus 57 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR 99 (168)
T 2nyx_A 57 HGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRR 99 (168)
T ss_dssp HCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSS
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCCC
Confidence 4679999999999999999999999999999998887776653
No 288
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=67.04 E-value=36 Score=25.28 Aligned_cols=44 Identities=14% Similarity=0.102 Sum_probs=39.3
Q ss_pred ccccHHHHHHHh-CCChHHHHHHHHHHhhCCccceEEecCCCEEE
Q 019472 263 KSVTIEAMAKAF-GVTVEFIDVELSRFIAAGKLHCKIDKVAGVLE 306 (340)
Q Consensus 263 s~I~l~~mA~~~-g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~ 306 (340)
..++...||+.+ |++...+-..|.+|...|-|.-..|..++...
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~ 78 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRV 78 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEE
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeE
Confidence 568999999999 99999999999999999999998887766443
No 289
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=66.84 E-value=52 Score=27.01 Aligned_cols=44 Identities=14% Similarity=0.103 Sum_probs=35.7
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEcCC
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 310 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~~ 310 (340)
-.++-+.||..+|++.+.+-+.+.+|-.+|-|. ...|.|.+.++
T Consensus 177 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d~ 220 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIH----LDGREISILDR 220 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEE----ESSSCEEESCS
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEE----ecCCEEEEeCH
Confidence 357889999999999999999999999998774 34566666554
No 290
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=66.68 E-value=24 Score=27.28 Aligned_cols=49 Identities=12% Similarity=0.066 Sum_probs=38.6
Q ss_pred HhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEc
Q 019472 257 QFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 308 (340)
Q Consensus 257 q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~ 308 (340)
.++.....++.+.||+.+|++...+-+.|.+|...|-|.-. ..+.+..+
T Consensus 15 ~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~---~~~~~~LT 63 (142)
T 1on2_A 15 MLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYE---KYRGLVLT 63 (142)
T ss_dssp HHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE---TTTEEEEC
T ss_pred HHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe---eCceEEEc
Confidence 34444567999999999999999999999999999988654 23555554
No 291
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=66.64 E-value=12 Score=32.30 Aligned_cols=64 Identities=9% Similarity=0.064 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEc
Q 019472 243 FRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 308 (340)
Q Consensus 243 ~~~l~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~ 308 (340)
.+.+++.|+..++..-+.|=..++-..||+.||+|...|-.-|..|-.+|-+.- -+..|+.+..
T Consensus 30 ~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~--~~~~G~~V~~ 93 (239)
T 2hs5_A 30 TTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAH--ELNRGVFVRV 93 (239)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECC
T ss_pred HHHHHHHHHHHHHcCCCCCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--eCCCeeEEeC
Confidence 467888899988888899999999999999999999999999999999998854 4566776654
No 292
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=66.51 E-value=33 Score=28.01 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=37.4
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEcCC
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 310 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~~ 310 (340)
...++.+.||..+|++.+.+-+.+.+|-.+|-|. ...|.|.+.++
T Consensus 161 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d~ 205 (216)
T 4ev0_A 161 LFQIRHHELAALAGTSRETVSRVLHALAEEGVVR----LGPGTVEVREA 205 (216)
T ss_dssp EEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----EETTEEEESCH
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----ecCCEEEEeCH
Confidence 4568899999999999999999999999999884 34577777643
No 293
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=66.09 E-value=2.4 Score=33.10 Aligned_cols=64 Identities=8% Similarity=0.059 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhccc-cHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEc
Q 019472 243 FRYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 308 (340)
Q Consensus 243 ~~~l~~~ir~~~l~q~i~pYs~I-~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~ 308 (340)
...+++.|+..++..-+.|=..+ +...||+.||+|...|-+-+..|..+|-|..+ +..|+.+..
T Consensus 13 ~~~i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~~~G~~V~~ 77 (126)
T 3ic7_A 13 YLQIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNK--RGIGFFVAS 77 (126)
T ss_dssp TTHHHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEE--TTTEEEECT
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE--cCCccEEcc
Confidence 35678888888888888899999 99999999999999999999999999987543 667777654
No 294
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=66.07 E-value=24 Score=27.67 Aligned_cols=43 Identities=7% Similarity=0.139 Sum_probs=36.7
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCE
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 304 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~ 304 (340)
...++.+.||+.+|++...+-+.+.+|...|-|.-+-|..++.
T Consensus 62 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR 104 (159)
T 3s2w_A 62 EDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDRR 104 (159)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---C
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCC
Confidence 4679999999999999999999999999999998888777663
No 295
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=65.39 E-value=38 Score=26.16 Aligned_cols=47 Identities=11% Similarity=0.096 Sum_probs=40.0
Q ss_pred HhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCC
Q 019472 257 QFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 303 (340)
Q Consensus 257 q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g 303 (340)
.++.....++.+.+|+.+|++...+-..|.+|...|-+.-.-|..++
T Consensus 44 ~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 90 (155)
T 1s3j_A 44 ASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDR 90 (155)
T ss_dssp HHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCC
Confidence 34444567999999999999999999999999999999887776555
No 296
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=64.93 E-value=13 Score=28.63 Aligned_cols=48 Identities=10% Similarity=0.115 Sum_probs=40.1
Q ss_pred HHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCC
Q 019472 256 SQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 303 (340)
Q Consensus 256 ~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g 303 (340)
..++.....++...+|+.+|++...+-+.|.+|...|-+.-.-|..++
T Consensus 43 L~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 90 (142)
T 2bv6_A 43 LTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQ 90 (142)
T ss_dssp HHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSST
T ss_pred HHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCc
Confidence 334444567999999999999999999999999999999887776555
No 297
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=64.74 E-value=17 Score=28.65 Aligned_cols=43 Identities=7% Similarity=0.124 Sum_probs=33.0
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCE
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 304 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~ 304 (340)
...++...+|+.+|++...+-..|.+|...|-|.-.-|..++.
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~R 103 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRR 103 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCCC
Confidence 5689999999999999999999999999999997766655543
No 298
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=64.62 E-value=36 Score=25.93 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=38.0
Q ss_pred HHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEe
Q 019472 250 VRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKID 299 (340)
Q Consensus 250 ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID 299 (340)
.|.+++..+.+ ...++..+|+.+|++...+-+.|..|-..|-+..+-+
T Consensus 47 ~rl~IL~~L~~--~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 47 NRLRLLSLLAR--SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ 94 (122)
T ss_dssp HHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 34444444433 4588999999999999999999999999999977554
No 299
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=64.43 E-value=43 Score=27.14 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=34.5
Q ss_pred cccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEcC
Q 019472 264 SVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNR 309 (340)
Q Consensus 264 ~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~ 309 (340)
.++-+.||..+|++.+.+-+.+.+|-.+|-|. ...|.|.+.+
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d 208 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS----AHGKTIVVYG 208 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEEEC
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE----eCCCEEEEEe
Confidence 57889999999999999999999999998774 2345565543
No 300
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=64.29 E-value=12 Score=31.91 Aligned_cols=63 Identities=11% Similarity=0.088 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhccc-cHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEE
Q 019472 243 FRYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLET 307 (340)
Q Consensus 243 ~~~l~~~ir~~~l~q~i~pYs~I-~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~ 307 (340)
.+.+++.|+..++..-+.|=..+ +-..||+.||+|...|-+-|..|..+|-+.- -+..|+.+.
T Consensus 9 ~~~v~~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~--~~g~G~~V~ 72 (239)
T 1hw1_A 9 AGFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTI--QHGKPTKVN 72 (239)
T ss_dssp HHHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE--ecCCCcEee
Confidence 46778888888888888999999 8999999999999999999999999998853 355677665
No 301
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=64.07 E-value=26 Score=28.76 Aligned_cols=68 Identities=12% Similarity=-0.037 Sum_probs=55.8
Q ss_pred HHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcC---CChhhhhHhhHHHHHhccccCCHHHHHHHHHhcc
Q 019472 89 MDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG---GDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSI 156 (340)
Q Consensus 89 i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~---~~~~~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~ 156 (340)
+-..+.+++-.+..+-|+.|....+.+.+..+.. ..|..+.+..++-|-.+..+|+|..|...|-.++
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3455677888888999999998888888876543 2477888999999999999999999999998864
No 302
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=64.01 E-value=30 Score=25.03 Aligned_cols=68 Identities=15% Similarity=0.081 Sum_probs=52.4
Q ss_pred HHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCCh-hhhhHhhHHHHHhccccCCHHHHHHHHHhcc
Q 019472 89 MDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDW-ERKNRLKVYEGLYCMSTRNFKKAASLFLDSI 156 (340)
Q Consensus 89 i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~-~~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~ 156 (340)
.+.|+.+-...+..++|.++...+.+|-........+ .....+...-|..+...|++..|...+-++.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3678888899999999999999999998876532211 2344556677888889999999998887764
No 303
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=63.95 E-value=1 Score=32.45 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=33.4
Q ss_pred HHHHHHHhhhhhccccHHHHHHHhCCCh---HHHHHHHHHHhhCCccceEEe
Q 019472 251 RTVVYSQFLESYKSVTIEAMAKAFGVTV---EFIDVELSRFIAAGKLHCKID 299 (340)
Q Consensus 251 r~~~l~q~i~pYs~I~l~~mA~~~g~~~---~~vE~~L~~lI~~g~l~akID 299 (340)
|..++.|++.|=.+=.|++++- +.+ +.||..|.+|...|+|.++||
T Consensus 9 r~~iL~qiL~~eAreRL~rI~l---vKPe~A~~VE~~Li~lAq~Gqi~~ki~ 57 (80)
T 1eij_A 9 KKQIMMQILTPEARSRLANLRL---TRPDFVEQIELQLIQLAQMGRVRSKIT 57 (80)
T ss_dssp SHHHHTTTCCHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHHCCSSCCCCC
T ss_pred HHHHHHHHcCHHHHHHHHhhhh---cCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 3455677777765555555542 333 489999999999999999886
No 304
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=63.73 E-value=26 Score=23.48 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKT 82 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~ 82 (340)
..++..+|..|...|++++|.+.+.+..+..
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3467889999999999999999999987654
No 305
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=63.73 E-value=23 Score=27.19 Aligned_cols=44 Identities=16% Similarity=0.118 Sum_probs=38.8
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEE
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLE 306 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~ 306 (340)
... +.+.+|+.+|++...+-..|.+|...|-+.-.-|..++-..
T Consensus 49 ~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~ 92 (144)
T 3f3x_A 49 EPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIV 92 (144)
T ss_dssp SCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred CCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCceE
Confidence 344 99999999999999999999999999999988888877533
No 306
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=63.65 E-value=11 Score=32.55 Aligned_cols=66 Identities=9% Similarity=0.136 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhccc-cHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEcCC
Q 019472 243 FRYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 310 (340)
Q Consensus 243 ~~~l~~~ir~~~l~q~i~pYs~I-~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~~ 310 (340)
...+.+.++.++...-+.|=..+ +-..||+.||+|...+-+-|..|..+|-|..+ +..|+.+...+
T Consensus 11 ~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~~~ 77 (236)
T 3edp_A 11 FEVIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRK--NGVGLYVQPKL 77 (236)
T ss_dssp HHHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE--CCceEEEccCc
Confidence 35677777777777777888999 89999999999999999999999999987553 66788776543
No 307
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=63.62 E-value=47 Score=25.30 Aligned_cols=61 Identities=15% Similarity=-0.008 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHH----hcCHHHHHhHHHHHHH
Q 019472 52 REAHLAKSLFYIQ----IGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF----YMDFDLISKSIDKAKS 117 (340)
Q Consensus 52 r~~~~~La~~~~~----~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~----~~~~~~~~~~i~ka~~ 117 (340)
..+...||.+|.+ .+|+++|.++|.+.-+.- ..+.+..+-.++.. .+|+..+..++.+|-.
T Consensus 57 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN-----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 4567788888887 788888888887765431 23445555555555 5677777777776654
No 308
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=63.56 E-value=31 Score=26.35 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=37.4
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCC
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 303 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g 303 (340)
..++.+.||+.+|++...+-+.|..|...|-+.-.-|+.++
T Consensus 40 ~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~ 80 (152)
T 1ku9_A 40 KPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGER 80 (152)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCc
Confidence 56999999999999999999999999999999887777664
No 309
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=63.10 E-value=18 Score=28.55 Aligned_cols=47 Identities=11% Similarity=0.237 Sum_probs=37.0
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEcCC
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 310 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~~ 310 (340)
..++.+.||+.+|+|...+++.+.+|-..|-+..+ -..+|-....++
T Consensus 27 ~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~-rG~~GGy~Lar~ 73 (143)
T 3t8r_A 27 GCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSV-RGAKGGYQLRVP 73 (143)
T ss_dssp CCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC-SSSSSEEEESSC
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEec-CCCCCCeeecCC
Confidence 46999999999999999999999999999988764 233444444433
No 310
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=62.97 E-value=17 Score=25.70 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=37.2
Q ss_pred HHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccce
Q 019472 255 YSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC 296 (340)
Q Consensus 255 l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~a 296 (340)
....+.+=...+...||..||++-..+-+.|-.|=..|.+..
T Consensus 20 ~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~ 61 (75)
T 1sfu_A 20 EVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKM 61 (75)
T ss_dssp HHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEec
Confidence 445777878899999999999999999999999999998865
No 311
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=62.70 E-value=34 Score=25.91 Aligned_cols=51 Identities=18% Similarity=0.243 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEe
Q 019472 248 REVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKID 299 (340)
Q Consensus 248 ~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID 299 (340)
+..|.+++.. +.....++...+|+.+|++...+-+.|..|...|-+..+-+
T Consensus 41 ~~~rl~IL~~-L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~ 91 (122)
T 1u2w_A 41 DENRAKITYA-LCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKE 91 (122)
T ss_dssp SHHHHHHHHH-HHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--
T ss_pred CHHHHHHHHH-HHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEE
Confidence 3344444443 33245689999999999999999999999999999876533
No 312
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=62.57 E-value=29 Score=30.16 Aligned_cols=54 Identities=6% Similarity=-0.100 Sum_probs=23.5
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHH
Q 019472 59 SLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKA 115 (340)
Q Consensus 59 a~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka 115 (340)
+..+.+.|+..+|.+.|.+..+... .-.+..+.+..+....|++..+...+.++
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P---~~~~~~~~la~~l~~~g~~~~A~~~l~~~ 245 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENP---EDAALATQLALQLHQVGRNEEALELLFGH 245 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcCC---ccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3334444445555554444433221 11233344444444555555555444443
No 313
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=62.52 E-value=22 Score=26.29 Aligned_cols=45 Identities=13% Similarity=0.082 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHH
Q 019472 49 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVF 93 (340)
Q Consensus 49 ~~ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l 93 (340)
+.-+.....+|+-+...|+++.|+.++.+...-|..+...+.++-
T Consensus 17 e~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~q 61 (95)
T 1om2_A 17 QKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQ 61 (95)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 334566778999999999999999988888888888777665443
No 314
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=62.40 E-value=15 Score=30.32 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhhhh-ccccHHHHHHHhCCChHHHHHHHHHHhhCCc-cc
Q 019472 248 REVRTVVYSQFLESY-KSVTIEAMAKAFGVTVEFIDVELSRFIAAGK-LH 295 (340)
Q Consensus 248 ~~ir~~~l~q~i~pY-s~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~-l~ 295 (340)
..-|.+.+.+++..- ..++.+.||+.||+|...+.+.|..|-..|- |.
T Consensus 19 ~~~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~ 68 (187)
T 1j5y_A 19 RQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIV 68 (187)
T ss_dssp HHHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCE
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 345667777887753 4499999999999999999999999988887 64
No 315
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=62.21 E-value=14 Score=28.81 Aligned_cols=48 Identities=10% Similarity=0.117 Sum_probs=35.2
Q ss_pred HhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCE
Q 019472 257 QFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 304 (340)
Q Consensus 257 q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~ 304 (340)
.++.....++.+.||+.+|++...+-..+.+|...|-|.-.-|+.++.
T Consensus 48 ~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R 95 (149)
T 4hbl_A 48 LTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKR 95 (149)
T ss_dssp HHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC--------
T ss_pred HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcc
Confidence 333345779999999999999999999999999999998777666653
No 316
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=62.16 E-value=27 Score=27.64 Aligned_cols=39 Identities=18% Similarity=0.089 Sum_probs=33.1
Q ss_pred hhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEe
Q 019472 261 SYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKID 299 (340)
Q Consensus 261 pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID 299 (340)
+=..++.+.||+.+|+|+..+++.+..|-..|-+..+=.
T Consensus 27 ~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG 65 (149)
T 1ylf_A 27 PSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG 65 (149)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--
T ss_pred CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC
Confidence 335799999999999999999999999999998876433
No 317
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=62.08 E-value=42 Score=27.72 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=29.5
Q ss_pred cccHHHHHHHhCCChHHHHHHHHHHhhCCccc
Q 019472 264 SVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH 295 (340)
Q Consensus 264 ~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~ 295 (340)
.++-+.||+.+|++.+.+-+.+.+|..+|-|.
T Consensus 163 ~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~ 194 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTALNSLIKEGYIS 194 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 47889999999999999999999999999874
No 318
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=61.98 E-value=11 Score=22.91 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=22.9
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHH
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRF 288 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~l 288 (340)
..-.+...+|+.||++...|.+++.+.
T Consensus 19 ~~g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 356789999999999999999888654
No 319
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=61.87 E-value=15 Score=28.61 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=35.8
Q ss_pred HHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccce--EEecCCCE
Q 019472 256 SQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC--KIDKVAGV 304 (340)
Q Consensus 256 ~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~a--kID~~~g~ 304 (340)
..++ ....++.+.||+.+|++...+-+.+.+|...|-+.- ..|+.++.
T Consensus 44 L~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R 93 (151)
T 3kp7_A 44 LNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQR 93 (151)
T ss_dssp HHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC----------
T ss_pred HHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCC
Confidence 3444 578899999999999999999999999999999986 34666654
No 320
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=61.38 E-value=26 Score=24.23 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhc
Q 019472 54 AHLAKSLFYIQIGDKEKALEQLKVTESKTV 83 (340)
Q Consensus 54 ~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~ 83 (340)
++..+|..|...|++++|.+.|.++.+...
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 788899999999999999999999886553
No 321
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=61.09 E-value=38 Score=24.67 Aligned_cols=33 Identities=0% Similarity=-0.027 Sum_probs=31.2
Q ss_pred ccHHHHHHHhCCChHHHHHHHHHHhhCCccceE
Q 019472 265 VTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCK 297 (340)
Q Consensus 265 I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~ak 297 (340)
++...+|..+|++...+.+.+..|...|-|.-.
T Consensus 21 ~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~ 53 (95)
T 1r7j_A 21 SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE 53 (95)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE
Confidence 999999999999999999999999999988665
No 322
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=60.98 E-value=71 Score=30.65 Aligned_cols=93 Identities=15% Similarity=-0.057 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhhH
Q 019472 54 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 133 (340)
Q Consensus 54 ~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~~ 133 (340)
++..+...|.+.|++++|.+++.++.+....++. ..+-.+|..+...|+++.+.....+-. +.+..|+.. .
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~--~tyn~lI~~~~~~g~~~~A~~l~~~M~---~~G~~Pd~~----t 177 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL--RSYGPALFGFCRKGDADKAYEVDAHMV---ESEVVPEEP----E 177 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHH---HTTCCCCHH----H
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc--ceehHHHHHHHHCCCHHHHHHHHHHHH---hcCCCCCHH----H
Confidence 4667889999999999999999999876554442 345566777778899988887776543 345555522 3
Q ss_pred HHHH--hccccCCHHHHHHHHHhc
Q 019472 134 YEGL--YCMSTRNFKKAASLFLDS 155 (340)
Q Consensus 134 ~~gl--~~l~~r~y~~Aa~~F~e~ 155 (340)
|..+ .+...|++.+|...|-+.
T Consensus 178 y~~Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 178 LAALLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHH
Confidence 4444 244678888888877764
No 323
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=60.87 E-value=34 Score=25.17 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=39.3
Q ss_pred hccccHHHHHHHh-CCChHHHHHHHHHHhhCCccceEEecCCCEEE
Q 019472 262 YKSVTIEAMAKAF-GVTVEFIDVELSRFIAAGKLHCKIDKVAGVLE 306 (340)
Q Consensus 262 Ys~I~l~~mA~~~-g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~ 306 (340)
....++..+|+.+ |++...+-..|.+|...|-|.-+.|..++...
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~ 81 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRV 81 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEE
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCee
Confidence 4678999999999 59999999999999999999988887765433
No 324
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=60.82 E-value=59 Score=26.96 Aligned_cols=51 Identities=22% Similarity=0.363 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceE
Q 019472 245 YYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCK 297 (340)
Q Consensus 245 ~l~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~ak 297 (340)
.+.+..+.++ ..++. -..++...+|+.+|+|...+-+.|.+|...|-|...
T Consensus 16 ~l~d~~~~~I-L~~L~-~~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 16 VMLEDTRRKI-LKLLR-NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHSHHHHHH-HHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhCCHHHHHH-HHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3344444443 44445 368999999999999999999999999999999775
No 325
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=60.80 E-value=50 Score=27.37 Aligned_cols=43 Identities=19% Similarity=0.086 Sum_probs=35.8
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEcC
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNR 309 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~ 309 (340)
-.++-+.||..+|++.+.+-+.+.+|..+|-|. ...|.|.+.+
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d 221 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVSERMLA----LDGKRIKIID 221 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEE----EETTEEEESC
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEe----eCCCEEEEeC
Confidence 467899999999999999999999999998774 3356677764
No 326
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=60.55 E-value=15 Score=32.45 Aligned_cols=65 Identities=12% Similarity=0.168 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhccc-cHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEcC
Q 019472 243 FRYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNR 309 (340)
Q Consensus 243 ~~~l~~~ir~~~l~q~i~pYs~I-~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~ 309 (340)
...+++.|+.++...-+.|=..+ +-..||+.||+|...+-+-|..|..+|-|.. -+..|+.+...
T Consensus 31 ~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~--~~g~G~~V~~~ 96 (272)
T 3eet_A 31 YLRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEG--RSGSGTYVRER 96 (272)
T ss_dssp HHHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--CCC--EEECCC
T ss_pred HHHHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--ecCceEEEecC
Confidence 45677778887777778888999 9999999999999999999999999998743 34556666543
No 327
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=60.44 E-value=55 Score=26.84 Aligned_cols=43 Identities=26% Similarity=0.338 Sum_probs=35.1
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecC-CCEEEEcC
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKV-AGVLETNR 309 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~-~g~l~~~~ 309 (340)
-.++-+.||+.+|++.+.+-+.+.+|..+|-| ... .|.|.+.+
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I----~~~~~~~i~i~d 209 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKMGIL----ERVNQRTLLLKD 209 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSE----EESSSSEEEESC
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCE----EEcCCCEEEEcC
Confidence 35788999999999999999999999998876 333 46677654
No 328
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=60.28 E-value=16 Score=28.99 Aligned_cols=47 Identities=11% Similarity=0.120 Sum_probs=37.7
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCC---EEEEc
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG---VLETN 308 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g---~l~~~ 308 (340)
...++.+.+|+.+|++...+-+.|.+|...|-|.-.-|..++ .|..+
T Consensus 65 ~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT 114 (161)
T 3e6m_A 65 YGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLT 114 (161)
T ss_dssp HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeEC
Confidence 458999999999999999999999999999999877665554 44444
No 329
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=60.28 E-value=11 Score=27.09 Aligned_cols=30 Identities=7% Similarity=0.100 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 019472 53 EAHLAKSLFYIQIGDKEKALEQLKVTESKT 82 (340)
Q Consensus 53 ~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~ 82 (340)
.++..+|..|...|++++|.+.|.+..+..
T Consensus 42 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 42 GTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 468889999999999999999999877654
No 330
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=60.27 E-value=18 Score=31.23 Aligned_cols=63 Identities=16% Similarity=0.233 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHhhhhhccc-cHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEc
Q 019472 244 RYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 308 (340)
Q Consensus 244 ~~l~~~ir~~~l~q~i~pYs~I-~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~ 308 (340)
..+.+.|+.++...-+.|=..+ +-..||+.||+|...+-+-|..|..+|-|.. -+..|+.+..
T Consensus 8 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~--~~g~G~~V~~ 71 (239)
T 3bwg_A 8 QQIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQ--VRGSGIFVRK 71 (239)
T ss_dssp CHHHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECC
T ss_pred HHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE--eCCceEEEec
Confidence 4567777777777778888999 8999999999999999999999999999854 3666776654
No 331
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=60.01 E-value=33 Score=26.18 Aligned_cols=35 Identities=11% Similarity=0.268 Sum_probs=32.1
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHhhCCccceE
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCK 297 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~ak 297 (340)
..++.+.||+.+|+|...+.+.+..|-..|-+...
T Consensus 25 ~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~ 59 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSI 59 (129)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEec
Confidence 56899999999999999999999999999988653
No 332
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=59.94 E-value=20 Score=27.93 Aligned_cols=48 Identities=15% Similarity=0.035 Sum_probs=36.8
Q ss_pred HHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCC
Q 019472 256 SQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 303 (340)
Q Consensus 256 ~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g 303 (340)
..++.....++...+|+.+|++...+-..|.+|...|-+.-.-|..++
T Consensus 49 L~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~ 96 (155)
T 3cdh_A 49 LACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDK 96 (155)
T ss_dssp HHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC-----
T ss_pred HHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcC
Confidence 344444567999999999999999999999999999999766555444
No 333
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=59.76 E-value=25 Score=27.49 Aligned_cols=45 Identities=9% Similarity=0.166 Sum_probs=38.1
Q ss_pred hhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCE
Q 019472 260 ESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 304 (340)
Q Consensus 260 ~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~ 304 (340)
.|...++.+.+|+.+|++...+-+.+.+|...|-+.=.-|..++-
T Consensus 47 ~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR 91 (147)
T 4b8x_A 47 SKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDGR 91 (147)
T ss_dssp SGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC----
T ss_pred CCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCcCc
Confidence 456679999999999999999999999999999999988888874
No 334
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=59.41 E-value=13 Score=24.81 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=34.5
Q ss_pred HHHHHhhhh-hccccHHHHHHHhCCChHHHHHHHHHHhhCCccc
Q 019472 253 VVYSQFLES-YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH 295 (340)
Q Consensus 253 ~~l~q~i~p-Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~ 295 (340)
.-+..|++. =--++++..|+.+|++.+++-+.|.+|=..|.|.
T Consensus 13 ~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 13 RELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 345555553 3558999999999999999999999998888763
No 335
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=59.34 E-value=23 Score=27.64 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 019472 50 EVREAHLAKSLFYIQIGDKEKALEQLKVTESKT 82 (340)
Q Consensus 50 ~ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~ 82 (340)
.-|...+-||--|++.|+|++|.++...+.+.-
T Consensus 72 ~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 72 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 356667778888888888888887777766543
No 336
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=58.99 E-value=25 Score=25.69 Aligned_cols=46 Identities=7% Similarity=-0.020 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc--hhHHHhHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV--GQKMDLVFYTLQ 97 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~--~~~i~~~l~~i~ 97 (340)
.+...+-|.-+++.|+|.+|+-++.++......+ ++..+.+++..+
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~~i~ki~~fyl~ec~ 100 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALNLSDNEEIKKIASFYLEECR 100 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHccccCHHHHHHHHHHHHHHH
Confidence 4557788999999999999999999887444322 344456655544
No 337
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=58.95 E-value=18 Score=34.75 Aligned_cols=18 Identities=6% Similarity=0.204 Sum_probs=13.1
Q ss_pred ccccCCHHHHHHHHHhcc
Q 019472 139 CMSTRNFKKAASLFLDSI 156 (340)
Q Consensus 139 ~l~~r~y~~Aa~~F~e~~ 156 (340)
+-..|.|.+|.++|-.++
T Consensus 217 Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 217 YQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHTTCHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHh
Confidence 455678888888887764
No 338
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=58.56 E-value=26 Score=26.60 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=36.7
Q ss_pred cccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCC
Q 019472 264 SVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 303 (340)
Q Consensus 264 ~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g 303 (340)
.++...+|+.+|++...+-+.+.+|...|-|.-.-|..++
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~ 89 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDS 89 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCC
Confidence 7999999999999999999999999999999877776665
No 339
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=58.40 E-value=28 Score=33.09 Aligned_cols=88 Identities=7% Similarity=-0.107 Sum_probs=56.3
Q ss_pred HHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhhHHHHHhcccc
Q 019472 63 IQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMST 142 (340)
Q Consensus 63 ~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~~~~gl~~l~~ 142 (340)
...|++++|.++|.+..+.+.. ..+.....+.+....|+...+...+.++-... ..+|+....+-..-+-+....
T Consensus 402 ~~~~~~~~A~~~~e~al~~~p~---~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~--~~~~~~~~~lw~~~~~~e~~~ 476 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKYGD---IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG--SLPPEKSGEIWARFLAFESNI 476 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC--CSCGGGCHHHHHHHHHHHHHS
T ss_pred HHcCChhHHHHHHHHHHHHCCC---CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHc
Confidence 3589999999999988876642 24666777777777899999998888876532 234443333333333334455
Q ss_pred CCHHHHHHHHHhc
Q 019472 143 RNFKKAASLFLDS 155 (340)
Q Consensus 143 r~y~~Aa~~F~e~ 155 (340)
|+...+...+-.+
T Consensus 477 G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 477 GDLASILKVEKRR 489 (530)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 7776666554433
No 340
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=57.63 E-value=30 Score=31.21 Aligned_cols=64 Identities=14% Similarity=0.069 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHh-----CCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHH-hcCHHHHHhHHHHHHHHH
Q 019472 54 AHLAKSLFYIQI-----GDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF-YMDFDLISKSIDKAKSLF 119 (340)
Q Consensus 54 ~~~~La~~~~~~-----Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~-~~~~~~~~~~i~ka~~~l 119 (340)
++.-||.+|... ||.++|.++|++.++.. +++.++......+.... .++...+...+++|-..-
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln--P~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC--SAHDPDHHITYADALCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC--CTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC--CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 588999999995 99999999999998866 33445655556665555 489999999999987753
No 341
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=57.26 E-value=21 Score=27.78 Aligned_cols=42 Identities=12% Similarity=0.107 Sum_probs=36.2
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHhhCCccce--EEecCCC
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC--KIDKVAG 303 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~a--kID~~~g 303 (340)
...++.+.+|+.+|++...+-..+.+|...|-+.- .-|..++
T Consensus 53 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~ 96 (154)
T 2qww_A 53 TPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDS 96 (154)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCC
Confidence 45699999999999999999999999999999987 6676665
No 342
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=57.13 E-value=26 Score=28.02 Aligned_cols=41 Identities=15% Similarity=0.116 Sum_probs=33.0
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCC
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 303 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g 303 (340)
..++.+.||+.+|++...+-..|.+|...|-|.-.-|..++
T Consensus 67 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~Dr 107 (166)
T 3deu_A 67 PDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDR 107 (166)
T ss_dssp SSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC------
T ss_pred CCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCC
Confidence 46999999999999999999999999999999877765554
No 343
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=56.75 E-value=17 Score=26.05 Aligned_cols=36 Identities=17% Similarity=0.391 Sum_probs=28.0
Q ss_pred HHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHh
Q 019472 251 RTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFI 289 (340)
Q Consensus 251 r~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI 289 (340)
|.-....| +.-.+...||+.+|+|+..|...+.+..
T Consensus 43 r~vl~l~~---~~g~s~~eIA~~lgis~~tV~~~l~ra~ 78 (92)
T 3hug_A 43 RAVIQRSY---YRGWSTAQIATDLGIAEGTVKSRLHYAV 78 (92)
T ss_dssp HHHHHHHH---TSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 33334456 6778999999999999999988887654
No 344
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=56.52 E-value=17 Score=28.04 Aligned_cols=46 Identities=9% Similarity=0.078 Sum_probs=38.5
Q ss_pred hhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCC
Q 019472 258 FLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 303 (340)
Q Consensus 258 ~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g 303 (340)
++.....++.+.+|+.+|++...+-..+.+|...|-+.-.-|..++
T Consensus 39 ~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 84 (145)
T 3g3z_A 39 TLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDR 84 (145)
T ss_dssp HHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCG
T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCC
Confidence 3333456999999999999999999999999999999876666554
No 345
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=56.31 E-value=67 Score=24.74 Aligned_cols=45 Identities=13% Similarity=0.100 Sum_probs=39.9
Q ss_pred hccccHHHHHHHh-CCChHHHHHHHHHHhhCCccceEEecCCCEEE
Q 019472 262 YKSVTIEAMAKAF-GVTVEFIDVELSRFIAAGKLHCKIDKVAGVLE 306 (340)
Q Consensus 262 Ys~I~l~~mA~~~-g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~ 306 (340)
....++..|++.+ |++...+-+.|.+|...|-|.-+.|..++...
T Consensus 46 ~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~ 91 (131)
T 1yyv_A 46 DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHV 91 (131)
T ss_dssp GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEE
T ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeE
Confidence 5678999999999 79999999999999999999998888776433
No 346
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=56.21 E-value=70 Score=27.25 Aligned_cols=41 Identities=10% Similarity=0.111 Sum_probs=34.0
Q ss_pred cccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEc
Q 019472 264 SVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 308 (340)
Q Consensus 264 ~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~ 308 (340)
.++-+.||..+|++.+.+-+.+.+|..+|-|. ...|.|.+.
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~----~~~~~i~I~ 257 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS----AHGKTIVVY 257 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----ECSSEEEEC
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----EcCCEEEEE
Confidence 57889999999999999999999999998774 344556554
No 347
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=55.35 E-value=98 Score=26.57 Aligned_cols=45 Identities=7% Similarity=0.031 Sum_probs=37.7
Q ss_pred hhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEc
Q 019472 261 SYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 308 (340)
Q Consensus 261 pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~ 308 (340)
..-..+...+|+.+|+|++.|+..|.+|...|-+. =..+|.|.+.
T Consensus 175 ~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~---~~~~~~~~~~ 219 (232)
T 2qlz_A 175 LNGRATVEELSDRLNLKEREVREKISEMARFVPVK---IINDNTVVLD 219 (232)
T ss_dssp HSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEE---EETTTEEEEC
T ss_pred hcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeE---EecCCeEEec
Confidence 46789999999999999999999999999999886 2345666654
No 348
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=54.84 E-value=19 Score=30.85 Aligned_cols=67 Identities=18% Similarity=0.156 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhccc-cHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecC--CCEEEEcC
Q 019472 243 FRYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKV--AGVLETNR 309 (340)
Q Consensus 243 ~~~l~~~ir~~~l~q~i~pYs~I-~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~--~g~l~~~~ 309 (340)
.+.+++.|+..++..-+.|=..+ +-..||+.||+|...|-.-|..|-.+|-+.-+--+. .|+.+...
T Consensus 6 ~~~v~~~L~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~~~~~~~~~G~~V~~~ 75 (239)
T 2di3_A 6 HESVMDWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPRSGTIITAA 75 (239)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTSGGGCCEECCC
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeecccCCCCCceeeCC
Confidence 46788899998888889999999 678999999999999999999999999885410344 67776553
No 349
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=54.55 E-value=23 Score=27.54 Aligned_cols=46 Identities=13% Similarity=0.092 Sum_probs=36.0
Q ss_pred hhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCC
Q 019472 258 FLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 303 (340)
Q Consensus 258 ~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g 303 (340)
++.....++.+.+|+.+|++...+-+.|.+|...|-|.-.-|..++
T Consensus 55 ~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 100 (153)
T 2pex_A 55 VLWETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDE 100 (153)
T ss_dssp HHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-----
T ss_pred HHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCcccC
Confidence 3333567999999999999999999999999999999877665554
No 350
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=54.04 E-value=42 Score=23.98 Aligned_cols=79 Identities=13% Similarity=-0.029 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhHhhHHHHHhccccCCHHHHH
Q 019472 70 KALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAA 149 (340)
Q Consensus 70 ~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~~~~~l~~~~gl~~l~~r~y~~Aa 149 (340)
+|++.|.+..+.... -......+..+....|++..+...+.++-..- |.. ......-|..+...++|.+|.
T Consensus 3 ~a~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~-~~~~~~la~~~~~~g~~~~A~ 73 (115)
T 2kat_A 3 AITERLEAMLAQGTD---NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-----PTY-SVAWKWLGKTLQGQGDRAGAR 73 (115)
T ss_dssp CHHHHHHHHHTTTCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC-HHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCCC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-----CCc-HHHHHHHHHHHHHcCCHHHHH
Confidence 466677776654322 13456677778888999999999988876641 211 223345677788899999999
Q ss_pred HHHHhccc
Q 019472 150 SLFLDSIS 157 (340)
Q Consensus 150 ~~F~e~~~ 157 (340)
..|-.+..
T Consensus 74 ~~~~~al~ 81 (115)
T 2kat_A 74 QAWESGLA 81 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98877653
No 351
>2jxn_A Uncharacterized protein YMR074C; YMR074CP, PDCD5-like protein, phosphoprotein, unknown functi; HET: MTN; NMR {Saccharomyces cerevisiae}
Probab=53.59 E-value=3 Score=32.84 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=34.6
Q ss_pred HHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEe
Q 019472 252 TVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKID 299 (340)
Q Consensus 252 ~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID 299 (340)
..++.+++.|=-+-.|++|+-.=-=-...||..|.+|...|+|.++|+
T Consensus 43 ~~iL~qiL~peAreRL~rI~lVkPekA~~VE~~Li~lAq~Gql~~kVs 90 (127)
T 2jxn_A 43 GAAIANFLEPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKIT 90 (127)
T ss_dssp THHHHTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSCBC
T ss_pred HHHHHHHcCHHHHHHHhcccccCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 345777777766666666654322234589999999999999999886
No 352
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=53.48 E-value=20 Score=27.30 Aligned_cols=51 Identities=8% Similarity=0.047 Sum_probs=41.4
Q ss_pred HHHHhhhhhccccHHHHHHHh--CCChHHHHHHHHHHhhCCccceEEecCCCEEEE
Q 019472 254 VYSQFLESYKSVTIEAMAKAF--GVTVEFIDVELSRFIAAGKLHCKIDKVAGVLET 307 (340)
Q Consensus 254 ~l~q~i~pYs~I~l~~mA~~~--g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~ 307 (340)
.|..++.-...++...||+.+ |++...+-+.|..|-..|-|... ..|....
T Consensus 17 ~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~---~rg~Y~L 69 (111)
T 3b73_A 17 RILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL---ANGVYVI 69 (111)
T ss_dssp HHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC---STTCEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec---CCceEEE
Confidence 345566666799999999999 99999999999999999999874 4553333
No 353
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=53.42 E-value=43 Score=26.36 Aligned_cols=42 Identities=10% Similarity=0.201 Sum_probs=38.4
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCC
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 303 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g 303 (340)
....+++.+++.+|++...+-+.|.+|...|-|.-+.|..++
T Consensus 35 ~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~ 76 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGS 76 (146)
T ss_dssp TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSS
T ss_pred hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 467899999999999999999999999999999998877766
No 354
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=53.41 E-value=16 Score=28.39 Aligned_cols=44 Identities=16% Similarity=0.174 Sum_probs=27.8
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEE
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLE 306 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~ 306 (340)
..++.+.||+.+|++...+-..+.+|...|-|.-.-|+.++...
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~ 99 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQK 99 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------C
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCchhh
Confidence 67999999999999999999999999999999887777766543
No 355
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=53.25 E-value=18 Score=28.57 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=31.1
Q ss_pred cHHHHHHHhCCChHHHHHHHHHHhhCCccceEEe
Q 019472 266 TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKID 299 (340)
Q Consensus 266 ~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID 299 (340)
+.+.||+.+|+|+..+++.+.+|-..|-+...=.
T Consensus 25 s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG 58 (145)
T 1xd7_A 25 SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG 58 (145)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC
Confidence 9999999999999999999999999999876544
No 356
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=53.12 E-value=55 Score=26.01 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCC
Q 019472 244 RYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVA 302 (340)
Q Consensus 244 ~~l~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~ 302 (340)
..|-+..|.+++..+. -..++...||+.+|++...+-+.|..|...|-|..+-|...
T Consensus 53 ~aL~~p~R~~IL~~L~--~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~ 109 (151)
T 3f6v_A 53 EVAAEPTRRRLVQLLT--SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRF 109 (151)
T ss_dssp HHHTSHHHHHHHHHGG--GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred HHhCCHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCE
Confidence 4445566776665543 46689999999999999999999999999999988765444
No 357
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=52.93 E-value=25 Score=28.32 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhC---CHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHH
Q 019472 52 REAHLAKSLFYIQIG---DKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS 117 (340)
Q Consensus 52 r~~~~~La~~~~~~G---d~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~ 117 (340)
.++.+.+|--+.+.+ +.+++.++++.+.+.- .+...-|....+.-.+...+|+..+..+++++-+
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 455666666666666 5556666666655532 2333445444444445566666666666665443
No 358
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=52.82 E-value=85 Score=25.75 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=35.4
Q ss_pred cccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEcC
Q 019472 264 SVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNR 309 (340)
Q Consensus 264 ~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~ 309 (340)
.++-+.||+.+|++.+.+-+.+.+|..+|-|. ...|.|.+.+
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d 218 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHRGWIR----LEGKSVLISD 218 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----EETTEEEESC
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE----ecCCEEEEcC
Confidence 47889999999999999999999999999774 3457777764
No 359
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=52.59 E-value=72 Score=26.28 Aligned_cols=43 Identities=12% Similarity=0.030 Sum_probs=35.5
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEcC
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNR 309 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~ 309 (340)
-.++-+.||..+|++.+.+-+.+.+|-.+|-|. ...|.|.+.+
T Consensus 174 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d 216 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVSRVLKRLEAHNILE----VSPRSVTLLD 216 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----ECSSCEEESC
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE----ecCCEEEEeC
Confidence 357899999999999999999999999998874 2346666654
No 360
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=52.36 E-value=51 Score=24.53 Aligned_cols=56 Identities=7% Similarity=0.200 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHhhhhhccccHHHHHHHh-CCChHHHHHHHHHHhhCCccceEEe
Q 019472 244 RYYMREVRTVVYSQFLESYKSVTIEAMAKAF-GVTVEFIDVELSRFIAAGKLHCKID 299 (340)
Q Consensus 244 ~~l~~~ir~~~l~q~i~pYs~I~l~~mA~~~-g~~~~~vE~~L~~lI~~g~l~akID 299 (340)
+.+-+.-|..++.....--.++++..+++.+ |++...+-+.|..|-..|-|.-+.+
T Consensus 22 ~~l~~~wrl~IL~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 22 HLLGKKYTMLIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp HHHHSTTHHHHHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES
T ss_pred HHHcCccHHHHHHHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec
Confidence 3444444555554443222235599999999 9999999999999999999998888
No 361
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=52.24 E-value=76 Score=25.44 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 019472 51 VREAHLAKSLFYIQIGDKEKALEQLKVTES 80 (340)
Q Consensus 51 ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~ 80 (340)
-|++.+-||--|++.|||++|.+++..+.+
T Consensus 70 ~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 70 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 456666777777777777777766666554
No 362
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=52.00 E-value=33 Score=25.83 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEec
Q 019472 244 RYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDK 300 (340)
Q Consensus 244 ~~l~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~ 300 (340)
+.+-+..|.+++..+.. ...+...+|+.+|++...+-+.|..|...|-+..+-|.
T Consensus 16 ~aL~~~~r~~IL~~L~~--~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~g 70 (118)
T 2jsc_A 16 RALADPTRCRILVALLD--GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEG 70 (118)
T ss_dssp HHHSSHHHHHHHHHHHT--TCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEECS
T ss_pred HHhCCHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEEC
Confidence 33444555555544332 34788999999999999999999999999999776543
No 363
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=51.82 E-value=1e+02 Score=28.44 Aligned_cols=75 Identities=15% Similarity=0.030 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhc--CCChh
Q 019472 49 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE--GGDWE 126 (340)
Q Consensus 49 ~~ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~--~~~~~ 126 (340)
+....+...+++.+...|++.+|+..+..+.....-. =..+..+|+.....|+...+...+.+.+..+.. |.+|.
T Consensus 168 ~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~---E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~ 244 (388)
T 2ff4_A 168 EDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYR---EPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 244 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3345568889999999999999999888776433211 135677788888999999999999999997743 55554
No 364
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=51.52 E-value=32 Score=27.84 Aligned_cols=37 Identities=19% Similarity=0.149 Sum_probs=33.0
Q ss_pred hhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceE
Q 019472 261 SYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCK 297 (340)
Q Consensus 261 pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~ak 297 (340)
|-..++.+.||+.+|+|...+++.+.+|-..|-+..+
T Consensus 25 ~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~ 61 (162)
T 3k69_A 25 RDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGT 61 (162)
T ss_dssp TTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEE
T ss_pred CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 3356999999999999999999999999999988654
No 365
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=51.35 E-value=28 Score=26.65 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=34.7
Q ss_pred HHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccce
Q 019472 256 SQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC 296 (340)
Q Consensus 256 ~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~a 296 (340)
..+...-..++++.+|+.+|++...+-+.|.+|...|-+.-
T Consensus 23 ~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r 63 (139)
T 2x4h_A 23 KRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKK 63 (139)
T ss_dssp HHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEe
Confidence 33334567899999999999999999999999999997754
No 366
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=51.27 E-value=21 Score=27.47 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=38.3
Q ss_pred hhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCC
Q 019472 258 FLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 303 (340)
Q Consensus 258 ~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g 303 (340)
++.....++.+.+|+.+|++...+-+.+.+|...|-+.-..|..++
T Consensus 48 ~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~ 93 (147)
T 1z91_A 48 LLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDE 93 (147)
T ss_dssp HHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCT
T ss_pred HHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCC
Confidence 3333458999999999999999999999999999999776665544
No 367
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=51.23 E-value=1.1e+02 Score=25.62 Aligned_cols=45 Identities=16% Similarity=0.153 Sum_probs=36.4
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEcCCC
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRPD 311 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~~~ 311 (340)
-.++-+.||..+|++.+.+-+.+.+|..+|-|. ...|.|.+.+++
T Consensus 192 ~~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~----~~~~~i~I~d~~ 236 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVTRLLGDLREKKMIS----IHKKKITVHKPV 236 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEECC--
T ss_pred ccCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEE----EcCCEEEECCHH
Confidence 357889999999999999999999999999875 235777776553
No 368
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=51.17 E-value=16 Score=28.25 Aligned_cols=33 Identities=15% Similarity=0.377 Sum_probs=30.5
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHhhCCc-cc
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGK-LH 295 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~-l~ 295 (340)
+-.++..||+.-|++...++..|++++.+|. ++
T Consensus 31 ~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~~l~ 64 (122)
T 3iuo_A 31 RKVALDDIAVSHGLDFPELLSEVETIVYSGTRIN 64 (122)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHHHHHTTCCCC
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHHHHHHcCCccC
Confidence 6789999999999999999999999999995 54
No 369
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=51.14 E-value=29 Score=27.97 Aligned_cols=44 Identities=11% Similarity=0.090 Sum_probs=39.1
Q ss_pred HHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccc
Q 019472 251 RTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH 295 (340)
Q Consensus 251 r~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~ 295 (340)
|.+.+..|+. .-+++..++|+.+|+|-..+.-.|-.|=.+|.+.
T Consensus 12 rk~~ILE~Lk-~G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~ 55 (165)
T 2vxz_A 12 RLRDILALLA-DGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVT 55 (165)
T ss_dssp HHHHHHHHHT-TCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCE
T ss_pred HHHHHHHHHH-hCCccHHHHHHHhCCcHHHHHHHHHHHHhcCceE
Confidence 3345788988 9999999999999999999999999999999884
No 370
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=50.28 E-value=26 Score=32.90 Aligned_cols=46 Identities=9% Similarity=0.076 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCcc
Q 019472 249 EVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKL 294 (340)
Q Consensus 249 ~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l 294 (340)
....+.+.+++.-...+|-..||+.+|+|...+-+.+.+|+.+|-+
T Consensus 38 ~~n~~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli 83 (429)
T 1z05_A 38 QINAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLI 83 (429)
T ss_dssp HHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 3344456777777889999999999999999999999999999876
No 371
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=50.20 E-value=30 Score=23.14 Aligned_cols=29 Identities=10% Similarity=0.141 Sum_probs=24.7
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHhh
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIA 290 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~ 290 (340)
+.-.+.+.+|+.+|+|+..+...+.++..
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRNHISNAMQ 52 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45669999999999999999998887553
No 372
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=49.89 E-value=61 Score=25.20 Aligned_cols=72 Identities=8% Similarity=0.071 Sum_probs=52.7
Q ss_pred hccccHHHHHHHh-CCChHHHHHHHHHHhhCCccceEEecCCCEEE--EcCCC--cchHHHHHHHHhhHHHHHHHHH
Q 019472 262 YKSVTIEAMAKAF-GVTVEFIDVELSRFIAAGKLHCKIDKVAGVLE--TNRPD--AKNALYQATIKQGDFLLNRIQK 333 (340)
Q Consensus 262 Ys~I~l~~mA~~~-g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~--~~~~~--~r~~~y~~~l~~~~~l~~ri~~ 333 (340)
....+++.+++.+ |++...+-..|.+|..+|-|.=+.+..++.-. .-.+. .-........+.|+.....+..
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~~l~~l~~W~~~~~~~~~~ 113 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEPIVLQMKEWGESNRDVLES 113 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999 99999999999999999999888877665322 22222 2234566666777666655543
No 373
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=49.61 E-value=52 Score=32.72 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=9.2
Q ss_pred HHHHHHhCCHHHHHHHH
Q 019472 59 SLFYIQIGDKEKALEQL 75 (340)
Q Consensus 59 a~~~~~~Gd~~~A~~~l 75 (340)
.++..+.|++++|.++.
T Consensus 659 f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 659 FELALKVGQLTLARDLL 675 (814)
T ss_dssp HHHHHHHTCHHHHHHHH
T ss_pred eehhhhcCCHHHHHHHH
Confidence 34455556666665543
No 374
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=49.54 E-value=43 Score=26.48 Aligned_cols=43 Identities=9% Similarity=-0.018 Sum_probs=36.4
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEE
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVL 305 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l 305 (340)
..++.+.||+.+|++...+-..|.+|...|-|.-.-|..++-.
T Consensus 61 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~ 103 (168)
T 3u2r_A 61 EGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENRRV 103 (168)
T ss_dssp SCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCCCe
Confidence 4799999999999999999999999999999998888887753
No 375
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=49.23 E-value=18 Score=34.73 Aligned_cols=52 Identities=6% Similarity=-0.219 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHH
Q 019472 54 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAK 116 (340)
Q Consensus 54 ~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~ 116 (340)
+...+|+.+++.|.|++|..+|.++ +.+..+..+.+..|++..+.....||.
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a-----------~n~~~LA~~L~~Lg~yq~AVea~~KA~ 175 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKAN 175 (449)
T ss_dssp -------------CTTTHHHHHHHT-----------TCHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-----------hhHHHHHHHHHHhccHHHHHHHHHHcC
Confidence 6778888888888888888888754 455667777788888888888777774
No 376
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=49.15 E-value=16 Score=25.63 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=23.8
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHH
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSR 287 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~ 287 (340)
|=+.++..+|+.+|++.+++|+.|..
T Consensus 46 YL~~~l~eia~~l~~~~~eve~vL~~ 71 (76)
T 2k9l_A 46 FLSKSVEEISDVLRCSVEELEKVRQK 71 (76)
T ss_dssp TTCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHH
Confidence 88999999999999999999998754
No 377
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=48.88 E-value=41 Score=26.53 Aligned_cols=29 Identities=14% Similarity=0.084 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTES 80 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~ 80 (340)
|...+-||--|++.|+|++|.++...+++
T Consensus 78 Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 78 RECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444555555555555555555544443
No 378
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=48.73 E-value=32 Score=22.94 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=31.5
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHhhCCccce
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC 296 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~a 296 (340)
=+-++-..+|..||+|.+.....|.++..+|.+.-
T Consensus 16 ~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G~LRK 50 (68)
T 3i71_A 16 RQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRK 50 (68)
T ss_dssp TTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred hccccHHHHHHHhCCcHHHHHHHHHHHHhcchhhh
Confidence 45688899999999999999999999999998853
No 379
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=48.45 E-value=78 Score=29.54 Aligned_cols=91 Identities=11% Similarity=-0.018 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhC---CHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHH----hcCHHHHHhHHHHHHHHHhcCCChh
Q 019472 54 AHLAKSLFYIQIG---DKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF----YMDFDLISKSIDKAKSLFEEGGDWE 126 (340)
Q Consensus 54 ~~~~La~~~~~~G---d~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~----~~~~~~~~~~i~ka~~~l~~~~~~~ 126 (340)
+...||.+|.+.| ++.+|++.|.+..+....... ....+-.+... .+|+..+...+.++- .+++.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~---~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~~~ 249 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ---RVDSVARVLGDATLGTPDEKTAQALLEKIA-----PGYPA 249 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH---HHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGSTH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH---HHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCCHH
Confidence 6778888999999 888998888887654422211 11122222211 146777777777654 22333
Q ss_pred hhhHhhHHHHHh-c--cccCCHHHHHHHHHhcc
Q 019472 127 RKNRLKVYEGLY-C--MSTRNFKKAASLFLDSI 156 (340)
Q Consensus 127 ~~~~l~~~~gl~-~--l~~r~y~~Aa~~F~e~~ 156 (340)
....+ |.+ + ...+++.+|..+|-.+.
T Consensus 250 a~~~L----g~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 250 SWVSL----AQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp HHHHH----HHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHhCCCCCCHHHHHHHHHHHH
Confidence 22222 221 2 34778888888887764
No 380
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=48.14 E-value=25 Score=31.79 Aligned_cols=45 Identities=11% Similarity=0.081 Sum_probs=37.9
Q ss_pred HHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccc
Q 019472 251 RTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH 295 (340)
Q Consensus 251 r~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~ 295 (340)
|...+.+++..-..++.+.||+.||+|...+-+.|..|-..|.+-
T Consensus 6 r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i 50 (321)
T 1bia_A 6 VPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDV 50 (321)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcE
Confidence 444566777767789999999999999999999999998888663
No 381
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=48.11 E-value=33 Score=22.85 Aligned_cols=29 Identities=28% Similarity=0.276 Sum_probs=25.9
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHhh
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIA 290 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~ 290 (340)
+...+.+.||+.+|+|+..|...+.+.+.
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 47899999999999999999999888764
No 382
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.62 E-value=26 Score=24.47 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=28.5
Q ss_pred HHHHhhh--h-hccccHHHHHHHhCCChHHHHHHHHHHhh
Q 019472 254 VYSQFLE--S-YKSVTIEAMAKAFGVTVEFIDVELSRFIA 290 (340)
Q Consensus 254 ~l~q~i~--p-Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~ 290 (340)
++..|+. | =+.-.+..||+.+|++.+.|..|-.++=.
T Consensus 19 ~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa 58 (71)
T 2da7_A 19 VLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKV 58 (71)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccc
Confidence 3555544 2 16677999999999999999999988653
No 383
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=47.57 E-value=24 Score=32.81 Aligned_cols=46 Identities=7% Similarity=0.078 Sum_probs=39.3
Q ss_pred HHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccc
Q 019472 250 VRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH 295 (340)
Q Consensus 250 ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~ 295 (340)
...+.+.+++.-...+|-..||+.+|+|...+-+.+.+|+.+|-+.
T Consensus 16 ~n~~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~ 61 (406)
T 1z6r_A 16 TNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQ 61 (406)
T ss_dssp HHHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred hHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 3344567777778999999999999999999999999999988763
No 384
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=47.49 E-value=99 Score=25.27 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=34.5
Q ss_pred cccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEcC
Q 019472 264 SVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNR 309 (340)
Q Consensus 264 ~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~ 309 (340)
.++-+.||..+|++.+.+-+.+.+|-.+|-|.- ..|.|.+.+
T Consensus 187 ~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d 228 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRVLKKLQADGLLHA----RGKTVVLYG 228 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----ETTEEEEEC
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEE----CCCEEEEee
Confidence 478899999999999999999999999997742 346666554
No 385
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=47.32 E-value=32 Score=24.85 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=29.2
Q ss_pred HHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhC
Q 019472 253 VVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAA 291 (340)
Q Consensus 253 ~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~ 291 (340)
+-+..++ +.-.+.+.||+.+|+|+..|...+.+....
T Consensus 33 ~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 33 RTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp HHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3344443 678899999999999999999998876654
No 386
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=47.12 E-value=84 Score=23.20 Aligned_cols=35 Identities=14% Similarity=0.232 Sum_probs=31.6
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHhhCCccceE
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCK 297 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~ak 297 (340)
...++..+|+.+|++...+-+.|..|...|-+.-.
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 46899999999999999999999999998888653
No 387
>2hvu_A PDCD5-like protein; YMR074CP, solution structure, unknown function; NMR {Saccharomyces cerevisiae} PDB: 2jxn_A*
Probab=46.95 E-value=2.9 Score=32.31 Aligned_cols=46 Identities=20% Similarity=0.248 Sum_probs=31.8
Q ss_pred HHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEe
Q 019472 254 VYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKID 299 (340)
Q Consensus 254 ~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID 299 (340)
++.+++.|=.+=.|++++-.=-=-...||..|.+|...|+|.++||
T Consensus 45 iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~li~laq~Gql~~ki~ 90 (116)
T 2hvu_A 45 AIANFLEPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKIT 90 (116)
T ss_dssp TTTTTBCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCBC
T ss_pred HHHHHcCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 4556666655555555544322234589999999999999999886
No 388
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=46.82 E-value=1.1e+02 Score=25.71 Aligned_cols=42 Identities=12% Similarity=0.102 Sum_probs=34.9
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEc
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 308 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~ 308 (340)
-.++-+.||..+|++.+.+-+.+.+|..+|-|. ...|.+.+.
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~ 217 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLASLKRENILD----KKKNKIIVY 217 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----ECSSEEEES
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeE----eCCCEEEEe
Confidence 367899999999999999999999999998774 345666665
No 389
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=46.78 E-value=26 Score=25.72 Aligned_cols=34 Identities=9% Similarity=0.136 Sum_probs=26.1
Q ss_pred HHHhhhh--h-ccccHHHHHHHhCCChHHHHHHHHHH
Q 019472 255 YSQFLES--Y-KSVTIEAMAKAFGVTVEFIDVELSRF 288 (340)
Q Consensus 255 l~q~i~p--Y-s~I~l~~mA~~~g~~~~~vE~~L~~l 288 (340)
+.+|+.- . ..++++.+|+.+|+|+..+.+...+.
T Consensus 8 ~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 8 ACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp HHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455542 3 57999999999999999888777653
No 390
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=46.74 E-value=38 Score=28.32 Aligned_cols=43 Identities=14% Similarity=-0.049 Sum_probs=35.5
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCE
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 304 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~ 304 (340)
...++...||+.+|++...+-..|.+|...|-|.-.-|..++.
T Consensus 60 ~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~DrR 102 (207)
T 2fxa_A 60 LNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKR 102 (207)
T ss_dssp HTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC-----
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCc
Confidence 4579999999999999999999999999999998888776664
No 391
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=46.50 E-value=25 Score=28.26 Aligned_cols=39 Identities=18% Similarity=0.286 Sum_probs=31.6
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHhhCCccce-EEecCCCEEEEc
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC-KIDKVAGVLETN 308 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~a-kID~~~g~l~~~ 308 (340)
.-+++..+|+.+|++... +-++|.+|+|-| |++ +...+.
T Consensus 30 ~~LTv~EVAe~LgVs~sr----V~~LIr~G~L~AVr~G---r~~rVP 69 (148)
T 2kfs_A 30 PTYDLPRVAELLGVPVSK----VAQQLREGHLVAVRRA---GGVVIP 69 (148)
T ss_dssp CEEEHHHHHHHHTCCHHH----HHHHHHTTSCCCEEET---TEEEEE
T ss_pred ceEcHHHHHHHhCCCHHH----HHHHHHCCCceEEEEC---CEEEec
Confidence 567899999999999877 567899999988 775 555443
No 392
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=46.31 E-value=99 Score=23.78 Aligned_cols=49 Identities=18% Similarity=0.063 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhc
Q 019472 51 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYM 103 (340)
Q Consensus 51 ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~ 103 (340)
+.+....+-+=|+..||.++|.+++.++.- +...-++.-..+..++..+
T Consensus 6 l~kki~~ll~EY~~~~D~~Ea~~cl~eL~~----p~f~~e~V~~~i~~alE~~ 54 (129)
T 2nsz_A 6 LVKEIDMLLKEYLLSGDISEAEHCLKELEV----PHFHHELVYEAIVMVLEST 54 (129)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHTC----GGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhCC----CccHHHHHHHHHHHHHcCC
Confidence 344444556668889999999999988651 2233344445555566554
No 393
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=45.90 E-value=41 Score=25.93 Aligned_cols=42 Identities=14% Similarity=0.127 Sum_probs=32.0
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCE
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 304 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~ 304 (340)
..++.+.||+.+|++...+-+.+.+|...|-|.-.-|..++-
T Consensus 53 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R 94 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRR 94 (150)
T ss_dssp TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC--------
T ss_pred CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCccccc
Confidence 358999999999999999999999999999998777776664
No 394
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=45.87 E-value=30 Score=25.39 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.2
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHH
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSR 287 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~ 287 (340)
...++++.||+.+|+|+..+.+...+
T Consensus 16 ~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 16 MRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp TSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 46699999999999999988777765
No 395
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=45.83 E-value=22 Score=25.29 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh
Q 019472 55 HLAKSLFYIQIGDKEKALEQLKVTES 80 (340)
Q Consensus 55 ~~~La~~~~~~Gd~~~A~~~l~~~~~ 80 (340)
..++|+=|.-.|+|+.|..+|+.+.+
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 45678889999999999999988764
No 396
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=45.81 E-value=39 Score=22.83 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.9
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHh
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELSRFI 289 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~~lI 289 (340)
...+.+.||+.+|+|+..|...+.+.+
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~ 55 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKAL 55 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 678999999999999999998887655
No 397
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=45.16 E-value=39 Score=23.65 Aligned_cols=30 Identities=10% Similarity=0.264 Sum_probs=26.1
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHhhC
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIAA 291 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~~ 291 (340)
+.-.+.+.||+.+|++...|...+.+....
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKVHVKHMLKK 63 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 577899999999999999999998876543
No 398
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=45.07 E-value=30 Score=25.37 Aligned_cols=27 Identities=4% Similarity=0.289 Sum_probs=23.1
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHH
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRF 288 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~l 288 (340)
-..++++.+|+.+|+|+..+.+...+.
T Consensus 19 ~~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 19 SEGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 457999999999999999888877664
No 399
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=44.82 E-value=28 Score=26.48 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=29.6
Q ss_pred cccHHHHHHHhCCChHHHHHHHHHHhhCCccce
Q 019472 264 SVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC 296 (340)
Q Consensus 264 ~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~a 296 (340)
-.+...+|+.||++...+..++..+...|.+..
T Consensus 20 p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~ 52 (121)
T 2pjp_A 20 PWWVRDLAKETGTDEQAMRLTLRQAAQQGIITA 52 (121)
T ss_dssp CEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 347789999999999999999999999998854
No 400
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=44.55 E-value=38 Score=21.75 Aligned_cols=29 Identities=3% Similarity=0.190 Sum_probs=24.8
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHhh
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIA 290 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~ 290 (340)
+.-.+.+.||+.+|+|+..+...+.+...
T Consensus 11 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 11 DEGYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp HTSCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 56678899999999999999998887654
No 401
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=44.23 E-value=35 Score=28.27 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=30.2
Q ss_pred cccHHHHHHHhCCChHHHHHHHHHHhhCCccce
Q 019472 264 SVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC 296 (340)
Q Consensus 264 ~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~a 296 (340)
..++..||+.||++...+-+.|..|-..|-|.-
T Consensus 24 ~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~ 56 (196)
T 3k2z_A 24 PPSVREIARRFRITPRGALLHLIALEKKGYIER 56 (196)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEC
T ss_pred CCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEe
Confidence 489999999999999999999999999998853
No 402
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=44.11 E-value=22 Score=27.83 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=33.4
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCE
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 304 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~ 304 (340)
...++.+.||+.+|++...+-..+.+|...|-|.-.-|..++.
T Consensus 60 ~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R 102 (160)
T 3boq_A 60 PDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRR 102 (160)
T ss_dssp TTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC-------
T ss_pred CCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCCC
Confidence 4679999999999999999999999999999997766555543
No 403
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=43.85 E-value=8.9 Score=35.60 Aligned_cols=42 Identities=14% Similarity=0.132 Sum_probs=37.9
Q ss_pred HHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccc
Q 019472 253 VVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH 295 (340)
Q Consensus 253 ~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~ 295 (340)
+.+.+++. ...+|-..||+.+|+|...+-+.+.+|+.+|-+.
T Consensus 23 ~~il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~ 64 (380)
T 2hoe_A 23 SRILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVV 64 (380)
T ss_dssp CCSHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 34678888 8999999999999999999999999999999774
No 404
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=43.78 E-value=97 Score=25.88 Aligned_cols=57 Identities=12% Similarity=0.017 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc--hhHHHhHHHHHHHHHHhcCH
Q 019472 49 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV--GQKMDLVFYTLQLGFFYMDF 105 (340)
Q Consensus 49 ~~ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~--~~~i~~~l~~i~~~i~~~~~ 105 (340)
..+..=.+-+|.+++-.+||.+|.+.+......|... +++.-....++-+.+..|+.
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~i 69 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHM 69 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCC
Confidence 3344447889999999999999999999999888532 44444555566667777764
No 405
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=43.55 E-value=1.3e+02 Score=27.93 Aligned_cols=56 Identities=16% Similarity=-0.003 Sum_probs=31.2
Q ss_pred HHHHHHHHHHh----CCHHHHHHHHHHHHhhhccchhHHHhHHHHHHH---HHHhcCHHHHHhHHHHHH
Q 019472 55 HLAKSLFYIQI----GDKEKALEQLKVTESKTVAVGQKMDLVFYTLQL---GFFYMDFDLISKSIDKAK 116 (340)
Q Consensus 55 ~~~La~~~~~~----Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~---~i~~~~~~~~~~~i~ka~ 116 (340)
++.||.+|... +|+++|.++|.+.. - +. .+....+-.+ ....+|+..+...+.++-
T Consensus 216 ~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--~---g~-~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 216 VDSVARVLGDATLGTPDEKTAQALLEKIA--P---GY-PASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHG--G---GS-THHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHc--C---CC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 36677777665 67777777777765 1 11 1122222222 123567777777776654
No 406
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=43.29 E-value=50 Score=26.35 Aligned_cols=28 Identities=14% Similarity=0.084 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTE 79 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~ 79 (340)
|...+-||--|++.|+|++|.++...++
T Consensus 77 RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 77 RECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 407
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=43.29 E-value=45 Score=21.91 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=24.0
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHh
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFI 289 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI 289 (340)
+.-.+.+.+|+.+|+|+..+...+.+..
T Consensus 29 ~~g~s~~eIA~~lgis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGTIRSRVARAR 56 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5678999999999999999988887654
No 408
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=43.27 E-value=73 Score=21.88 Aligned_cols=44 Identities=18% Similarity=0.211 Sum_probs=36.8
Q ss_pred HHHHHhhhhh--ccccHHHHHHHh-----CCChHHHHHHHHHHhhCCccce
Q 019472 253 VVYSQFLESY--KSVTIEAMAKAF-----GVTVEFIDVELSRFIAAGKLHC 296 (340)
Q Consensus 253 ~~l~q~i~pY--s~I~l~~mA~~~-----g~~~~~vE~~L~~lI~~g~l~a 296 (340)
..+.+++... ..++.+.|++.+ +++...|-+.|..|...|.+.-
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~ 70 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEE
Confidence 4455666543 579999999999 9999999999999999998864
No 409
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=43.09 E-value=44 Score=22.69 Aligned_cols=30 Identities=10% Similarity=0.216 Sum_probs=26.1
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHhhC
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIAA 291 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~~ 291 (340)
+.-.+.+.||+.+|+|+..+...+.+....
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVHRANVMAK 58 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 678899999999999999999988876653
No 410
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=42.59 E-value=2.6e+02 Score=29.77 Aligned_cols=170 Identities=12% Similarity=0.026 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhccc--------------------hhHHHhHHHHHHHHHHhcCHHHHHhHHHH
Q 019472 55 HLAKSLFYIQIGDKEKALEQLKVTESKTVAV--------------------GQKMDLVFYTLQLGFFYMDFDLISKSIDK 114 (340)
Q Consensus 55 ~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~--------------------~~~i~~~l~~i~~~i~~~~~~~~~~~i~k 114 (340)
.+-+|..|+.+|++++|.+++.+.-.-.... ......+..++.+.=..+-++++......
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4778999999999999999997743211000 00113445555544444566666655554
Q ss_pred HHHHHhcCCChhhhhHhhHHHHHhccccCCHHHHHHHHHhccccCCcCccCCHhHHHHHHHH--H------HhhhcC---
Q 019472 115 AKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVL--T------SIISLD--- 183 (340)
Q Consensus 115 a~~~l~~~~~~~~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~~f~~~e~~~~~~~~~Y~~L--~------al~s~~--- 183 (340)
|-+... ..++..+..+...--..++.-++|.+|.......... -...++++-++. | .|+.++
T Consensus 925 Ai~~~~-~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~------~~r~~cLr~LV~~lce~~~~~~L~~lpf~g 997 (1139)
T 4fhn_B 925 ADASKE-TDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT------PLKKSCLLDFVNQLTKQGKINQLLNYSMPT 997 (1139)
T ss_dssp HHHHCC-SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS------SSCHHHHHHHHHHHHHHCCHHHHHHHTTTS
T ss_pred HHHhcc-CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH------HHHHHHHHHHHHHHHhCCChhhhhCCCCcc
Confidence 433221 2344433333222233567778888888777654211 122355544322 2 111111
Q ss_pred -hhHHHHhccCChHHHHH--hcCcchHHHHHHHHH--hccHHHHHHHHHHhHHHh
Q 019472 184 -RVSLKQKVVDAPEILTV--IGKIPYLSEFLNSLY--DCQYKSFFSAFAGLTEQI 233 (340)
Q Consensus 184 -r~~l~~~ll~~~~~~~~--l~~~p~l~~ll~af~--~~~~~~~~~~L~~~~~~l 233 (340)
.+++- .++..+ .++. +...|.+.+++.+|+ .+||++.-.++-++-..+
T Consensus 998 l~~~Vd-~IL~~k-Ar~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 998 LRQDVD-NLLERK-AFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp CHHHHH-HHHHHH-HHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHH-HHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 11111 122221 1111 234567889999984 577877766666554443
No 411
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=42.59 E-value=33 Score=24.26 Aligned_cols=28 Identities=29% Similarity=0.266 Sum_probs=24.7
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHhh
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELSRFIA 290 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~~lI~ 290 (340)
...+.+.||+.+|+|+..|...+.+.+.
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6789999999999999999998887653
No 412
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=42.34 E-value=55 Score=29.30 Aligned_cols=41 Identities=20% Similarity=0.153 Sum_probs=36.4
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCC
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVA 302 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~ 302 (340)
...++.+.||+.||+|...|-+.|..+-..|.+.=+|....
T Consensus 19 ~~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~iri~g~~ 59 (315)
T 2w48_A 19 EQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINYDY 59 (315)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSC
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEecCCc
Confidence 57799999999999999999999999999999986665543
No 413
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=42.32 E-value=74 Score=27.52 Aligned_cols=45 Identities=20% Similarity=0.163 Sum_probs=38.0
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEc
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 308 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~ 308 (340)
...++++.||+.+|++...+-+.|..|...|-+... ..++.+...
T Consensus 164 ~~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~--~r~~~~~LT 208 (244)
T 2wte_A 164 TKGTGITELAKMLDKSEKTLINKIAELKKFGILTQK--GKDRKVELN 208 (244)
T ss_dssp HTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTTEEEEC
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCccEEEEC
Confidence 467999999999999999999999999999999765 445555554
No 414
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=42.30 E-value=33 Score=25.40 Aligned_cols=34 Identities=12% Similarity=0.247 Sum_probs=25.8
Q ss_pred HHHhhh--hhccccHHHHHHHhCCChHHHHHHHHHH
Q 019472 255 YSQFLE--SYKSVTIEAMAKAFGVTVEFIDVELSRF 288 (340)
Q Consensus 255 l~q~i~--pYs~I~l~~mA~~~g~~~~~vE~~L~~l 288 (340)
+.+|+. +...++++.+|+.+|+|+..+.+...+.
T Consensus 12 ~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 12 AVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344444 2456999999999999999888777663
No 415
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=42.26 E-value=37 Score=24.19 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=26.2
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHhhC
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIAA 291 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~~ 291 (340)
+.-.+.+.||+.+|+|+..|...+.+....
T Consensus 42 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 42 AKGYSNQEIASASHITIKTVKTHVSNILSK 71 (91)
T ss_dssp HTTCCTTHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 577899999999999999999999886643
No 416
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=42.18 E-value=1.3e+02 Score=23.93 Aligned_cols=50 Identities=18% Similarity=0.064 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhc
Q 019472 50 EVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYM 103 (340)
Q Consensus 50 ~ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~ 103 (340)
++......+-+=|+..||.++|.+++.++.. +...-++.-..+..++..+
T Consensus 7 el~kki~~lL~EY~~~~D~~EA~~cl~EL~~----p~f~~e~V~~~i~~alE~~ 56 (152)
T 2ion_A 7 HLVKEIDMLLKEYLLSGDISEAEHCLKELEV----PHFHHELVYEAIVMVLEST 56 (152)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHTC----GGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhCC----CcchHHHHHHHHHHHHcCC
Confidence 3444555566778889999999999988752 2233344445556666653
No 417
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=41.26 E-value=1.5e+02 Score=24.50 Aligned_cols=43 Identities=7% Similarity=0.108 Sum_probs=35.5
Q ss_pred cccHHHHHHHhCCCh-HHHHHHHHHHhhCCccceEEecCCCEEEEcCC
Q 019472 264 SVTIEAMAKAFGVTV-EFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 310 (340)
Q Consensus 264 ~I~l~~mA~~~g~~~-~~vE~~L~~lI~~g~l~akID~~~g~l~~~~~ 310 (340)
.++-+.||+.+|++. +.+-+.+.+|-.+|-|. ...|.|.+.++
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~----~~~~~i~I~d~ 212 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIV----YKNSCFYVQNL 212 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEE----EETTEEEESCH
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEE----ecCCEEEEeCH
Confidence 578899999999999 79999999999998764 33567777643
No 418
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=40.65 E-value=92 Score=22.08 Aligned_cols=45 Identities=13% Similarity=0.131 Sum_probs=35.2
Q ss_pred HHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCcc
Q 019472 250 VRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKL 294 (340)
Q Consensus 250 ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l 294 (340)
+..++|.-+=+.=+-++-..+|+.+|++-.+|.+.|-+|=.+|+|
T Consensus 20 ~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI 64 (80)
T 2lnb_A 20 LEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKV 64 (80)
T ss_dssp HHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCc
Confidence 333444334344677899999999999999999999999988886
No 419
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=40.19 E-value=49 Score=30.73 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=37.5
Q ss_pred HHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEE
Q 019472 255 YSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLET 307 (340)
Q Consensus 255 l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~ 307 (340)
+.+++.-.-.++++.+++.+|++...+.+.|.+|...|-|. ++....+.+.+
T Consensus 302 ll~~l~~~p~~t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~-~~~~gR~~~y~ 353 (373)
T 3eqx_A 302 LVQVIFEQPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLE-EVQSGKEKLFV 353 (373)
T ss_dssp HHHHHHHCSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCE-EC--CCSCEEE
T ss_pred HHHHHHHCCCccHHHHHHHhCcCHHHHHHHHHHHHHCCcEE-EeCCCCceEee
Confidence 44454434458899999999999999999999999999885 33333334443
No 420
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=39.69 E-value=35 Score=25.11 Aligned_cols=30 Identities=10% Similarity=0.071 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhc
Q 019472 54 AHLAKSLFYIQIGDKEKALEQLKVTESKTV 83 (340)
Q Consensus 54 ~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~ 83 (340)
.+.+.|+-+...|.|++|+++..+...+.+
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa~yL~ 46 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKATTYLS 46 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 367899999999999999999988776653
No 421
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=39.64 E-value=1.4e+02 Score=23.75 Aligned_cols=42 Identities=14% Similarity=0.243 Sum_probs=34.3
Q ss_pred cccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEcC
Q 019472 264 SVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNR 309 (340)
Q Consensus 264 ~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~ 309 (340)
.++-+.||..+|++.+.+-+.+.+|..+|-|.- ..|.|.+.+
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d 205 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVHV----KGKTMVVFG 205 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE----ETTEEEEET
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe----cCCEEEEEe
Confidence 578899999999999999999999999998742 345565543
No 422
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=39.12 E-value=57 Score=23.33 Aligned_cols=41 Identities=7% Similarity=0.183 Sum_probs=30.7
Q ss_pred HHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCC
Q 019472 251 RTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAG 292 (340)
Q Consensus 251 r~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g 292 (340)
+..++..|... ...++..+|..||++...+-+|+.+.-..|
T Consensus 11 k~~~v~~~~~~-~g~s~~~ia~~~gIs~~tl~rW~~~~~~~g 51 (97)
T 2jn6_A 11 KRDAVALYENS-DGASLQQIANDLGINRVTLKNWIIKYGSNH 51 (97)
T ss_dssp HHHHHHHHTTG-GGSCHHHHHHHHTSCHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHc-CCChHHHHHHHHCcCHHHHHHHHHHHhhcC
Confidence 44555555332 157899999999999999999998876544
No 423
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=38.73 E-value=67 Score=23.15 Aligned_cols=52 Identities=8% Similarity=0.180 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEe
Q 019472 246 YMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKID 299 (340)
Q Consensus 246 l~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID 299 (340)
+-+..|.+++..++. ....+...+|+.+|++...+-+.|..|-.. -+..+-+
T Consensus 24 L~~~~Rl~IL~~l~~-~~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~ 75 (99)
T 2zkz_A 24 MAHPMRLKIVNELYK-HKALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQ 75 (99)
T ss_dssp HCSHHHHHHHHHHHH-HSCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEE
T ss_pred hCCHHHHHHHHHHHH-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEe
Confidence 334455555544432 356899999999999999999999999998 7777655
No 424
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=38.73 E-value=24 Score=27.20 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=31.4
Q ss_pred ccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEe
Q 019472 265 VTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKID 299 (340)
Q Consensus 265 I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID 299 (340)
++.+.||+.+|+++..+.+.|..|+..|-|.=+-|
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 79999999999999999999999999998865444
No 425
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=38.71 E-value=62 Score=25.23 Aligned_cols=43 Identities=14% Similarity=0.178 Sum_probs=28.8
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEE
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLE 306 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~ 306 (340)
..++.+.+|+.+|++...+-..|.+|...|-+. +.|..++-..
T Consensus 51 ~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr-~~~~~DrR~~ 93 (148)
T 4fx0_A 51 IDLTMSELAARIGVERTTLTRNLEVMRRDGLVR-VMAGADARCK 93 (148)
T ss_dssp ---CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC-----------
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE-eeCCCCCCee
Confidence 468999999999999999999999999999884 5566665433
No 426
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=38.46 E-value=5.5 Score=32.26 Aligned_cols=49 Identities=10% Similarity=0.133 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccce
Q 019472 247 MREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC 296 (340)
Q Consensus 247 ~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~a 296 (340)
++.++.+++. .+.|-.+++...+|+.||+|...+-+.+.+|-.+|-+..
T Consensus 11 ~d~l~~~Il~-~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 11 LDRIDRNILN-ELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp CCSHHHHHHH-HHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred hhHHHHHHHH-HHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 3445555555 788999999999999999999999999999999999874
No 427
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=38.17 E-value=44 Score=24.99 Aligned_cols=33 Identities=9% Similarity=0.152 Sum_probs=25.4
Q ss_pred HHHhhh--hhccccHHHHHHHhCCChHHHHHHHHH
Q 019472 255 YSQFLE--SYKSVTIEAMAKAFGVTVEFIDVELSR 287 (340)
Q Consensus 255 l~q~i~--pYs~I~l~~mA~~~g~~~~~vE~~L~~ 287 (340)
+.+|+. +...++++.||+.+|+|+..+.+...+
T Consensus 12 ~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 12 VCTVINNNIAHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 344444 356799999999999999988877755
No 428
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=37.70 E-value=56 Score=30.21 Aligned_cols=42 Identities=14% Similarity=0.060 Sum_probs=33.1
Q ss_pred HHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccce
Q 019472 255 YSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC 296 (340)
Q Consensus 255 l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~a 296 (340)
+.+++...-.++++.+++.+|+|...+.+.|.+|...|.|.-
T Consensus 302 ll~~l~~~p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~ 343 (373)
T 2qc0_A 302 LVQVIFEQPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEE 343 (373)
T ss_dssp HHHHHHHCSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEE
T ss_pred HHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEE
Confidence 334443223467788999999999999999999999999863
No 429
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=37.52 E-value=46 Score=30.84 Aligned_cols=61 Identities=16% Similarity=0.147 Sum_probs=50.2
Q ss_pred HhhhHHHHHHHHHHHHHHHhhhh-----hccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEe
Q 019472 239 LYPHFRYYMREVRTVVYSQFLES-----YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKID 299 (340)
Q Consensus 239 l~~h~~~l~~~ir~~~l~q~i~p-----Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID 299 (340)
+......+...+|..++.+-.+| |...+...+|+.+|++...++..+.++-.+|...++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (403)
T 3ez9_A 13 IALRASALLKAMSQDIEDQRKEFNQTEYYQTFTRNAVAKLPKLSRRIVDQAIKEMEEDGYQFNKKQ 78 (403)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHTTTCCCCCBCHHHHHHSTTCCHHHHHHHHHHHHHTSCCCCEEE
T ss_pred HHHHHHHHHHHHHHHHhccccCcCccccCCCcCHHHHHHHhCCCHHHHHHHHHHHhhcCCCCCcCC
Confidence 34556778888888888876665 78999999999999999999988888888888877643
No 430
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=36.15 E-value=64 Score=22.73 Aligned_cols=27 Identities=11% Similarity=-0.007 Sum_probs=23.1
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHh
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELSRFI 289 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~~lI 289 (340)
...++..+|..||++...+-+|+.+.=
T Consensus 37 ~g~s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 37 DGESKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 357899999999999999999987643
No 431
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=36.12 E-value=97 Score=21.66 Aligned_cols=36 Identities=11% Similarity=0.287 Sum_probs=28.3
Q ss_pred hhccccHHHHHHHhC-----------CChHHHHHHHHHHhhCCccce
Q 019472 261 SYKSVTIEAMAKAFG-----------VTVEFIDVELSRFIAAGKLHC 296 (340)
Q Consensus 261 pYs~I~l~~mA~~~g-----------~~~~~vE~~L~~lI~~g~l~a 296 (340)
-+.++.+++|...+. ++.++++..|.+++.+|++.+
T Consensus 19 N~~slpl~RIh~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e~kL~~ 65 (74)
T 1ldd_A 19 NLGAMKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNTLADEGRLKY 65 (74)
T ss_dssp HHCSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHTTSEEC
T ss_pred cCCCCCHHHHHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhCCeEEE
Confidence 478888888776652 355899999999999998853
No 432
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=35.79 E-value=86 Score=24.28 Aligned_cols=64 Identities=9% Similarity=0.158 Sum_probs=46.1
Q ss_pred HHHHHhHHHhhcChhHhhhHHHHHHHHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhh
Q 019472 224 SAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIA 290 (340)
Q Consensus 224 ~~L~~~~~~l~~D~~l~~h~~~l~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~ 290 (340)
+.+......+....+--|.........|.+.+.+- |.-.++..+|..+|+|+..|-+-+.+.-.
T Consensus 55 e~~~~L~~~~gG~~iYIPk~~~~~~~~Rn~~I~~~---f~G~n~~eLArkYgLSer~I~~Ii~~~r~ 118 (129)
T 1rr7_A 55 EIVVAICKHLGGGQVYIPRGQALDSLIRDLRIWND---FNGRNVSELTTRYGVTFNTVYKAIRRMRR 118 (129)
T ss_dssp HHHHHHHHHHCSSCCCCCCSHHHHHHHHHHHHHHH---CCSSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCeeEEeeCCchHHHHHHHHHHHHH---hCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444444555555555666667777888777766 77889999999999999998887766544
No 433
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=35.12 E-value=1.6e+02 Score=28.08 Aligned_cols=63 Identities=16% Similarity=0.121 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 019472 54 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 118 (340)
Q Consensus 54 ~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 118 (340)
++..+-..|++.|+.++|.+++.++.+.-..++. ..+-.++..+...|+++.+...+.+-++.
T Consensus 142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~--~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 142 SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEE--PELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 4667888999999999999999999876655543 45667888888999999999988887663
No 434
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=35.02 E-value=58 Score=26.11 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=28.4
Q ss_pred HHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHh
Q 019472 251 RTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFI 289 (340)
Q Consensus 251 r~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI 289 (340)
|.-....| +.-.+.+.||+.+|+|+..|...+.+..
T Consensus 146 r~vl~l~~---~~g~s~~EIA~~lgis~~tV~~~l~ra~ 181 (194)
T 1or7_A 146 RMAITLRE---LDGLSYEEIAAIMDCPVGTVRSRIFRAR 181 (194)
T ss_dssp HHHHHHHH---TTCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHhHHHH---HcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44344556 6778999999999999999998887654
No 435
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=35.00 E-value=2e+02 Score=24.03 Aligned_cols=77 Identities=10% Similarity=0.045 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHhHHHhhcChhHhhhHHHHHHHHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHH
Q 019472 206 YLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVEL 285 (340)
Q Consensus 206 ~l~~ll~af~~~~~~~~~~~L~~~~~~l~~D~~l~~h~~~l~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L 285 (340)
.+.+++.++.++++..+.+...+... +-...+.+.++|+.....-++.|+.+-++..++..++==.|.+++-.
T Consensus 32 ~L~~~~~~~~~~d~~~~~~~~~~i~~-------~E~~aD~l~~~I~~~L~~~~~~P~dredi~~L~~~lD~I~D~~~~~a 104 (227)
T 2olt_A 32 LLVPFFEATITGNWDDAVQIRKQISL-------AEKQGDSLKREIRLTLPSGLFMPVERTDLLELLTQQDKIANKAKDIS 104 (227)
T ss_dssp THHHHHHHHHTTCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHGGGCCSCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677778778888776655444433 23457888888988877778889999888888777665555555555
Q ss_pred HHHh
Q 019472 286 SRFI 289 (340)
Q Consensus 286 ~~lI 289 (340)
..+.
T Consensus 105 ~~~~ 108 (227)
T 2olt_A 105 GRVI 108 (227)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 436
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=34.81 E-value=52 Score=30.07 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=35.8
Q ss_pred HhhhhhccccHHHHHHHh--CCChHHHHHHHHHHhhCCccc
Q 019472 257 QFLESYKSVTIEAMAKAF--GVTVEFIDVELSRFIAAGKLH 295 (340)
Q Consensus 257 q~i~pYs~I~l~~mA~~~--g~~~~~vE~~L~~lI~~g~l~ 295 (340)
.|++.-..|+.+.+|+.| |+|+..|-+.+..|=..|.|.
T Consensus 29 ~yl~~~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~~GlL~ 69 (338)
T 1stz_A 29 EYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIY 69 (338)
T ss_dssp HHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCccHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 388888999999999999 999999999999999999883
No 437
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=34.77 E-value=68 Score=22.93 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=25.1
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHhh
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELSRFIA 290 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~~lI~ 290 (340)
.-.+.+.||+.+|+++..|+..+.++..
T Consensus 43 ~G~s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 43 KGFTNQEIADALHLSKRSIEYSLTSIFN 70 (90)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6779999999999999999999988654
No 438
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=34.58 E-value=1e+02 Score=24.94 Aligned_cols=90 Identities=17% Similarity=0.103 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChh
Q 019472 47 GESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWE 126 (340)
Q Consensus 47 ~~~~ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~ 126 (340)
.++++++....+-+=|+..||.++|..+++++. .+...-.+.-..+..++..++- -.+.+.+.-..+-+
T Consensus 5 s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~eL~----~p~~~~~~V~~~I~~aldrk~~--ere~~s~LL~~L~~----- 73 (165)
T 2rg8_A 5 DERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLN----LGEMKSGVPVLAVSLALEGKAS--HREMTSKLLSDLCG----- 73 (165)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHT----CSGGGGHHHHHHHHHHHTSCHH--HHHHHHHHHHHHBT-----
T ss_pred CHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhC----CcccHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHH-----
Confidence 456677777777888999999999999998765 2233334444555566655432 12222222221210
Q ss_pred hhhHhhHHHHHhccccCCHHHHHHHHHhcccc
Q 019472 127 RKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 158 (340)
Q Consensus 127 ~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~~ 158 (340)
-.+...++.++...+++..+.
T Consensus 74 -----------~~ls~~~i~~Gf~~lle~ldD 94 (165)
T 2rg8_A 74 -----------TVMSTTDVEKSFDKLLKDLPE 94 (165)
T ss_dssp -----------TTBCHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCCHHHHHHHHHHHHHhChh
Confidence 135556777888888877654
No 439
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=34.16 E-value=8.5 Score=34.20 Aligned_cols=38 Identities=11% Similarity=0.283 Sum_probs=0.0
Q ss_pred ccccHHHHHHHh-CCChHHHHHHHHHHhhCCccceEEec
Q 019472 263 KSVTIEAMAKAF-GVTVEFIDVELSRFIAAGKLHCKIDK 300 (340)
Q Consensus 263 s~I~l~~mA~~~-g~~~~~vE~~L~~lI~~g~l~akID~ 300 (340)
.=|+++.|++.| +++++++.+.|-.|+.+|.|.-.||-
T Consensus 223 ~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IYsTiDd 261 (270)
T 2pi2_A 223 EGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDD 261 (270)
T ss_dssp ---------------------------------------
T ss_pred cCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEeccccc
Confidence 578889999999 79999999999999999999998885
No 440
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=33.64 E-value=72 Score=23.43 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=24.1
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHhh
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELSRFIA 290 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~~lI~ 290 (340)
...+++.||+.+|+|...|...+.+.+.
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlk 65 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALR 65 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6789999999999999999888776554
No 441
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=33.20 E-value=1.7e+02 Score=22.66 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=37.3
Q ss_pred cccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCE
Q 019472 264 SVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 304 (340)
Q Consensus 264 ~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~ 304 (340)
.++.+.+|+.+|++...+-..+.+|...|-|.=.-|+.++-
T Consensus 46 ~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR 86 (151)
T 4aik_A 46 EQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDRR 86 (151)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTT
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCCc
Confidence 45678999999999999999999999999999889988873
No 442
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=32.40 E-value=89 Score=22.39 Aligned_cols=25 Identities=4% Similarity=0.340 Sum_probs=21.8
Q ss_pred cccHHHHHHHhCCChHHHHHHHHHH
Q 019472 264 SVTIEAMAKAFGVTVEFIDVELSRF 288 (340)
Q Consensus 264 ~I~l~~mA~~~g~~~~~vE~~L~~l 288 (340)
.++++.+|+.+|+|+..+.+...+.
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 7999999999999999888777653
No 443
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=32.27 E-value=2.9e+02 Score=25.11 Aligned_cols=101 Identities=16% Similarity=0.109 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc---cchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCC-----
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKVTESKTV---AVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGG----- 123 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~---~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~----- 123 (340)
-+.+.-++.=|.+.++|++|++++..--.... ..+--.|.+..++++.-..+ +..-....++.-+++..-.
T Consensus 35 HQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~-~~~~~~~~~rL~~L~~~~~~~~p~ 113 (336)
T 3lpz_A 35 AQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAG-QRVDGASRGKLLGCLRLFQPGEPV 113 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHTTSCTTCHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCCCcH
Confidence 33455677778889999999998876443221 12233566666666654332 1111123333333332211
Q ss_pred ---------Chhhh--------hHhhHHHHHhccccCCHHHHHHHHH
Q 019472 124 ---------DWERK--------NRLKVYEGLYCMSTRNFKKAASLFL 153 (340)
Q Consensus 124 ---------~~~~~--------~~l~~~~gl~~l~~r~y~~Aa~~F~ 153 (340)
.|..+ ..|.-.-|..++.+++|.+|-.+|+
T Consensus 114 r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 114 RKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp HHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 12211 1355566777888899999998886
No 444
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=32.06 E-value=64 Score=26.81 Aligned_cols=44 Identities=14% Similarity=0.108 Sum_probs=36.0
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEcCC
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 310 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~~ 310 (340)
-.++-+.||+.+|++.+.+-+.+.+|..+|-|.- ..|.|.+.++
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~----~~~~i~I~d~ 228 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQDNGLIEL----HRKEILIPDA 228 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEE----ETTEEEESCG
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHHCCCEEe----cCCEEEEeCh
Confidence 4578999999999999999999999999998742 2466666543
No 445
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=31.68 E-value=80 Score=22.78 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLK 76 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~ 76 (340)
..+++.=|++|++.||+.+|+.++.
T Consensus 35 A~~Y~~Da~~fl~kGD~v~Ala~is 59 (86)
T 2oo2_A 35 IEAYISDSRYFLEKGDLVRAFECVV 59 (86)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3446667999999999999998875
No 446
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=31.35 E-value=82 Score=23.08 Aligned_cols=42 Identities=12% Similarity=0.242 Sum_probs=31.8
Q ss_pred HHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCcc
Q 019472 250 VRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKL 294 (340)
Q Consensus 250 ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l 294 (340)
.|.+++.-+ -...+...+|+.||++...+-+|+.+.-..|.+
T Consensus 22 ~r~~i~~~~---~~g~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~ 63 (128)
T 1pdn_C 22 IRLKIVEMA---ADGIRPCVISRQLRVSHGCVSKILNRYQETGSI 63 (128)
T ss_dssp HHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHHhhCCc
Confidence 344444434 246788999999999999999999998776654
No 447
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=30.82 E-value=13 Score=32.41 Aligned_cols=64 Identities=9% Similarity=0.146 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhccc-cHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEc
Q 019472 243 FRYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 308 (340)
Q Consensus 243 ~~~l~~~ir~~~l~q~i~pYs~I-~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~ 308 (340)
...+++.|+.++...-+.|=..+ +...||+.||+|...+-+-|..|..+|-|..+ +..|+.+..
T Consensus 18 ~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~ 82 (247)
T 2ra5_A 18 YFQLSQQLEAAIEHGALTPGSLLGNEIELAARLGLSRPTVRQAIQSLVDKGLLVRR--RGVGTQVVH 82 (247)
T ss_dssp --------------------------------------------------CEEEEE--C--------
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE--cCceeEEec
Confidence 34566777777777777888899 89999999999999999999999999988543 555665543
No 448
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=30.78 E-value=54 Score=24.88 Aligned_cols=27 Identities=7% Similarity=0.115 Sum_probs=22.8
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHH
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRF 288 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~l 288 (340)
...++++.+|+.+|+|+..+.+...+.
T Consensus 25 ~~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 25 ESPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp TSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 456999999999999999888777663
No 449
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=30.26 E-value=43 Score=26.11 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=24.0
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHH
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSR 287 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~ 287 (340)
|=+.+++.+|+.+|++++++|..+..
T Consensus 37 YL~~~l~eia~~l~~~~~eve~vL~~ 62 (130)
T 2k9m_A 37 FLSKSVEEISDVLRCSVEELEKVRQK 62 (130)
T ss_dssp SBSSCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999998754
No 450
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=30.18 E-value=41 Score=20.68 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=20.6
Q ss_pred cccHHHHHHHhCCChHHHHHHHHHH
Q 019472 264 SVTIEAMAKAFGVTVEFIDVELSRF 288 (340)
Q Consensus 264 ~I~l~~mA~~~g~~~~~vE~~L~~l 288 (340)
.+++..+|+.+|++.+++-..+.++
T Consensus 2 k~rv~~lAkel~~~~k~l~~~l~~~ 26 (49)
T 1nd9_A 2 DVTIKTLAAERQTSVERLVQQFADA 26 (49)
T ss_dssp EECTTHHHHHHSSSHHHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHHHc
Confidence 3678899999999999987777654
No 451
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=30.13 E-value=2.4e+02 Score=26.05 Aligned_cols=23 Identities=9% Similarity=0.209 Sum_probs=10.5
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Q 019472 58 KSLFYIQIGDKEKALEQLKVTES 80 (340)
Q Consensus 58 La~~~~~~Gd~~~A~~~l~~~~~ 80 (340)
+|-.+.-.|++++|...+.+...
T Consensus 283 lal~~l~~gd~d~A~~~l~rAl~ 305 (372)
T 3ly7_A 283 KAVSALVKGKTDESYQAINTGID 305 (372)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHh
Confidence 33334444555555555544443
No 452
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=30.01 E-value=1.9e+02 Score=22.24 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=31.6
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHhhCCccceE
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCK 297 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~ak 297 (340)
...++...+|+.+|++...+-+.|.+|...|-|.-+
T Consensus 52 ~~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~ 87 (155)
T 2h09_A 52 VGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMI 87 (155)
T ss_dssp HSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEe
Confidence 356889999999999999999999999999977543
No 453
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=29.57 E-value=96 Score=24.95 Aligned_cols=31 Identities=3% Similarity=0.006 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhCCH----------HHHHHHHHHHHhhh
Q 019472 52 REAHLAKSLFYIQIGDK----------EKALEQLKVTESKT 82 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~----------~~A~~~l~~~~~~~ 82 (340)
-.++..+|..+.+.|++ ++|...|.+..+..
T Consensus 36 aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld 76 (158)
T 1zu2_A 36 ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC
Confidence 34566777788877765 58888888877544
No 454
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=29.52 E-value=80 Score=22.95 Aligned_cols=44 Identities=27% Similarity=0.202 Sum_probs=32.1
Q ss_pred HHHHHHHHhhhhh---c--cccHHHHHHHhCCChHHHHHHHHHHhhCCc
Q 019472 250 VRTVVYSQFLESY---K--SVTIEAMAKAFGVTVEFIDVELSRFIAAGK 293 (340)
Q Consensus 250 ir~~~l~q~i~pY---s--~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~ 293 (340)
.+..++..+.+.- . -.++..+|..||++...+-.|+.+.-.+|.
T Consensus 11 ~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~~~~~ 59 (108)
T 2rn7_A 11 VRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTG 59 (108)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHHHHhccc
Confidence 3445555554431 1 168899999999999999999999876653
No 455
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=29.16 E-value=85 Score=22.95 Aligned_cols=29 Identities=10% Similarity=0.179 Sum_probs=24.7
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHhh
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIA 290 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~ 290 (340)
+.-.+.+.||+.+|+++..|...+.++..
T Consensus 47 ~~G~s~~EIA~~L~iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 47 AEGFLVTEIAKKLNRSIKTISSQKKSAMM 75 (99)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35678899999999999999999887654
No 456
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=29.01 E-value=71 Score=26.81 Aligned_cols=51 Identities=10% Similarity=0.045 Sum_probs=40.1
Q ss_pred HHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEc
Q 019472 255 YSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 308 (340)
Q Consensus 255 l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~ 308 (340)
+..+.+.-..++.+.+|+.+|++...+-+.|.+|...|-+.-.=| +.+..+
T Consensus 11 I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~---~~i~LT 61 (214)
T 3hrs_A 11 LYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKK---AGYLLT 61 (214)
T ss_dssp HHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT---TEEEEC
T ss_pred HHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEecC---CCeEEC
Confidence 334444567799999999999999999999999999998865432 555554
No 457
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=28.98 E-value=67 Score=22.16 Aligned_cols=22 Identities=27% Similarity=0.193 Sum_probs=19.6
Q ss_pred cHHHHHHHhCCChHHHHHHHHH
Q 019472 266 TIEAMAKAFGVTVEFIDVELSR 287 (340)
Q Consensus 266 ~l~~mA~~~g~~~~~vE~~L~~ 287 (340)
+.+.+|+.+|++...|-+|+..
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 3889999999999999999864
No 458
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=28.94 E-value=78 Score=25.53 Aligned_cols=43 Identities=16% Similarity=0.151 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhhhhhc--cccHHHHHHHhCCChHHHHHHHH
Q 019472 244 RYYMREVRTVVYSQFLESYK--SVTIEAMAKAFGVTVEFIDVELS 286 (340)
Q Consensus 244 ~~l~~~ir~~~l~q~i~pYs--~I~l~~mA~~~g~~~~~vE~~L~ 286 (340)
..+-..+...+..++.-|+. .+++..+|+.+|++...+-+|..
T Consensus 26 ~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 26 AKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp HHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 44444555444456665666 59999999999999999888776
No 459
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=28.88 E-value=75 Score=23.78 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=23.8
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHh
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFI 289 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI 289 (340)
+.-.+.+.+|+.+|+|+..|...+.+..
T Consensus 39 ~~g~s~~EIA~~lgiS~~tV~~~l~ra~ 66 (113)
T 1xsv_A 39 LEDYSLSEIADTFNVSRQAVYDNIRRTG 66 (113)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 6778999999999999999888776644
No 460
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=28.87 E-value=1.7e+02 Score=24.88 Aligned_cols=41 Identities=32% Similarity=0.344 Sum_probs=34.8
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCE
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 304 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~ 304 (340)
..|+...+|+.||++...+...|-.++.+|.+.-- |+..|.
T Consensus 167 g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~D-~~~eg~ 207 (218)
T 3cuq_B 167 GSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRD-DSVEGL 207 (218)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-ESSSCE
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEE-CCCCce
Confidence 57999999999999999999999999999977432 467773
No 461
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=28.26 E-value=96 Score=19.88 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=18.9
Q ss_pred HHHHHHHhCCChHHHHHHHHH
Q 019472 267 IEAMAKAFGVTVEFIDVELSR 287 (340)
Q Consensus 267 l~~mA~~~g~~~~~vE~~L~~ 287 (340)
+..+|..||++...+-+|+.+
T Consensus 28 ~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 28 QRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp HHHHHHHTTSCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHHH
Confidence 899999999999999998754
No 462
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=28.22 E-value=87 Score=26.81 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=35.7
Q ss_pred HHHhhhhhc-cccHHHHHHHhCCChHHHHHHHHHHhhCCccceE
Q 019472 255 YSQFLESYK-SVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCK 297 (340)
Q Consensus 255 l~q~i~pYs-~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~ak 297 (340)
+..++.... .+++..||+.+|++...+-+.|..|...|-+.-.
T Consensus 13 iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~ 56 (249)
T 1mkm_A 13 ILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK 56 (249)
T ss_dssp HHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEC
Confidence 345554443 6999999999999999999999999999988653
No 463
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=27.95 E-value=91 Score=23.87 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=24.3
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHh
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFI 289 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI 289 (340)
+.-.+.+.||+.+|+|+..|...+.+..
T Consensus 122 ~~g~s~~EIA~~lgis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 122 IRGYSYREIATILSKNLKSIDNTIQRIR 149 (164)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6778999999999999999988877654
No 464
>1nxh_A MTH396 protein; hypothetical protein, disulfide bonds, homodimer, structural genomics, PSI, protein structure initiative; 2.80A {Methanothermobacterthermautotrophicus} SCOP: a.200.1.1
Probab=27.73 E-value=21 Score=27.60 Aligned_cols=41 Identities=12% Similarity=0.279 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHH
Q 019472 245 YYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSR 287 (340)
Q Consensus 245 ~l~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~ 287 (340)
.++..+..|++..| |+..==+--+++.||+|.+++++-+++
T Consensus 5 e~~~~MK~ril~S~--~w~edviiPlSk~lgis~ee~~~I~~~ 45 (126)
T 1nxh_A 5 ELMRLMKRRILESY--RWQEDVVKPLSRELEIDVEEFQDILMD 45 (126)
T ss_dssp HHHHHHHHHHHTSH--HHHHHTTTTTTTTGGGTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc--hHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 56777777777665 333333445778999999999998876
No 465
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=27.61 E-value=37 Score=27.29 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=0.0
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHhh
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFIA 290 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI~ 290 (340)
...++-+.||..+|++.+.+-+.+.++|.
T Consensus 166 ~~~~t~~~iA~~lG~sretlsR~l~~l~~ 194 (194)
T 3dn7_A 166 IQRVPQYLLASYLGFTPEYLSEIRKKYIS 194 (194)
T ss_dssp -----------------------------
T ss_pred HHHCCHHHHHHHhCCCHHHHHHHHHhhcC
Confidence 34678899999999999999888888763
No 466
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=27.42 E-value=1.5e+02 Score=21.86 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=39.5
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHhHHHhhcChhHhhhHHHHHHHHHH
Q 019472 206 YLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRT 252 (340)
Q Consensus 206 ~l~~ll~af~~~~~~~~~~~L~~~~~~l~~D~~l~~h~~~l~~~ir~ 252 (340)
.+.++-..|- +|...........+..+..|+-+...++.|...+..
T Consensus 52 Sl~~IG~~fg-RDHsTV~ha~~ki~~~~~~d~~l~~~i~~l~~~l~~ 97 (101)
T 3pvv_A 52 SLPKIGQAFG-RDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQ 97 (101)
T ss_dssp CHHHHHHHTT-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHC-CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHh
Confidence 3667778888 999999999999999999999999999988887765
No 467
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=26.90 E-value=3.7e+02 Score=25.19 Aligned_cols=33 Identities=9% Similarity=-0.047 Sum_probs=27.2
Q ss_pred hCHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHH
Q 019472 46 LGESEVREA-HLAKSLFYIQIGDKEKALEQLKVT 78 (340)
Q Consensus 46 ~~~~~ir~~-~~~La~~~~~~Gd~~~A~~~l~~~ 78 (340)
..+.+++.. ..+|++.|.+.|+|.||.-++.-.
T Consensus 28 ~~~~el~i~~l~~L~~~h~~~~ny~EAa~~l~lh 61 (436)
T 2yin_A 28 NNREEMYIRYLYKLRDLHLDCDNYTEAAYTLLLH 61 (436)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 356777777 679999999999999999888543
No 468
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=26.78 E-value=1.7e+02 Score=29.35 Aligned_cols=60 Identities=12% Similarity=0.125 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhC-CHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHH
Q 019472 55 HLAKSLFYIQIG-DKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS 117 (340)
Q Consensus 55 ~~~La~~~~~~G-d~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~ 117 (340)
....|.+.+..| +++.|.++|....+.+..... ..+..++..+..|+...+....++|-.
T Consensus 472 yi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~---~w~~y~~fe~~~~~~~~AR~lferal~ 532 (679)
T 4e6h_A 472 YLENAYIEYHISKDTKTACKVLELGLKYFATDGE---YINKYLDFLIYVNEESQVKSLFESSID 532 (679)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchH---HHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 345555555554 477777777777766643322 233444555556777777777776554
No 469
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=26.74 E-value=2.1e+02 Score=23.92 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=37.9
Q ss_pred hhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEc
Q 019472 261 SYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 308 (340)
Q Consensus 261 pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~ 308 (340)
....++++.+|+.+|++...+-+.|.+|-..|-+.-.-|.....+..+
T Consensus 24 ~~~~~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT 71 (230)
T 3cta_A 24 NRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNIT 71 (230)
T ss_dssp SEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEcCCeEEEEEC
Confidence 345688999999999999999999999999887777667634444443
No 470
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=26.67 E-value=1e+02 Score=23.73 Aligned_cols=43 Identities=16% Similarity=0.242 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCcc
Q 019472 249 EVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKL 294 (340)
Q Consensus 249 ~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l 294 (340)
..|.+++..+. .-.+...+|+.||++...|-+|+.+.-..|.+
T Consensus 36 e~r~~iv~~~~---~G~s~~~iA~~lgis~~TV~rw~~~~~~~G~~ 78 (149)
T 1k78_A 36 VVRQRIVELAH---QGVRPCDISRQLRVSHGCVSKILGRYYETGSI 78 (149)
T ss_dssp HHHHHHHHHHH---TTCCHHHHHHHHTCCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHH---cCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 34444454442 45789999999999999999999998777654
No 471
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=26.64 E-value=2.7e+02 Score=23.01 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEec
Q 019472 245 YYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDK 300 (340)
Q Consensus 245 ~l~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~ 300 (340)
.+-+..|.+++. ++. ....+...||+.+|++...+-..|..|...|-|...-+.
T Consensus 11 aL~~~~rl~IL~-~L~-~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~~ 64 (202)
T 2p4w_A 11 VLGNETRRRILF-LLT-KRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEK 64 (202)
T ss_dssp HHHSHHHHHHHH-HHH-HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred HhCCHHHHHHHH-HHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeec
Confidence 333444444443 332 467899999999999999999999999999999887763
No 472
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=26.59 E-value=58 Score=26.31 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=35.6
Q ss_pred cccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEcC
Q 019472 264 SVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNR 309 (340)
Q Consensus 264 ~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~ 309 (340)
.++-+.||+.+|++.+.+-+.+.+|..+|-|. ...|.|.+.+
T Consensus 146 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d 187 (202)
T 2zcw_A 146 KATHDELAAAVGSVRETVTKVIGELAREGYIR----SGYGKIQLLD 187 (202)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEESC
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----eCCCEEEEeC
Confidence 47889999999999999999999999999875 3357777764
No 473
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=26.37 E-value=93 Score=22.49 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHH
Q 019472 52 REAHLAKSLFYIQIGDKEKALEQLKV 77 (340)
Q Consensus 52 r~~~~~La~~~~~~Gd~~~A~~~l~~ 77 (340)
..+++.=|++|++.||+.+|+.++.=
T Consensus 39 A~~Y~~Da~~fl~kGD~v~Ala~isY 64 (87)
T 2pmr_A 39 ALNYRDDSVYYLEKGDHITSFGCITY 64 (87)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34466669999999999999988753
No 474
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=25.66 E-value=1.3e+02 Score=23.79 Aligned_cols=51 Identities=6% Similarity=-0.031 Sum_probs=44.5
Q ss_pred hhh-ccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEcCC
Q 019472 260 ESY-KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 310 (340)
Q Consensus 260 ~pY-s~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~~ 310 (340)
--| +-|+-..+++.|+++..-.-.-|..|-..|.|.-..-.....|++..+
T Consensus 58 pk~gKlITpsvlseRlkI~gSLARkaLreL~~kGlIk~V~kh~~q~IYTra~ 109 (143)
T 2xzm_8 58 SKVGKVLTVSTVVEKLKVNGSLARQLMRTMADRKLVEKVAKNGNQWVYSVIG 109 (143)
T ss_dssp TTSCSEECHHHHHHHHCBCHHHHHHHHHHHHHTTSEEEEEEETTEEEEEETT
T ss_pred cccceeecHHHHHHHhcchHHHHHHHHHHHHHCCCEEEEecCCCeEEEecCC
Confidence 358 999999999999999999999999999999998877777777777643
No 475
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=25.08 E-value=81 Score=22.27 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=31.1
Q ss_pred hhccccHHHHHHHh-CCChHHHHHHHHHHhhCCccc
Q 019472 261 SYKSVTIEAMAKAF-GVTVEFIDVELSRFIAAGKLH 295 (340)
Q Consensus 261 pYs~I~l~~mA~~~-g~~~~~vE~~L~~lI~~g~l~ 295 (340)
+=+..-+..+++.| +..+.++-+.+..||.+|++.
T Consensus 18 ~KskfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~le 53 (78)
T 1ucr_A 18 SKSKFYFNDFTDLFPDMKQREVKKILTALVNDEVLE 53 (78)
T ss_dssp HSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred ccccchHHHHHHHccccCHHHHHHHHHHHHhcCceE
Confidence 34567788999999 999999999999999999984
No 476
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.51 E-value=2.8e+02 Score=22.34 Aligned_cols=66 Identities=9% Similarity=0.039 Sum_probs=46.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHH-H-----HHHhcCHHHHHhHHHHHHHHHhc
Q 019472 56 LAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQ-L-----GFFYMDFDLISKSIDKAKSLFEE 121 (340)
Q Consensus 56 ~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~-~-----~i~~~~~~~~~~~i~ka~~~l~~ 121 (340)
+.-+-.++..|+|=+|-+.++.+=..+..++.--+.+.++|+ + ++..||+.-+...+.++...+..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~ 107 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRG 107 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 344566677799999999999877665444222456666666 4 34568888888888888887764
No 477
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=24.44 E-value=48 Score=26.72 Aligned_cols=42 Identities=17% Similarity=0.089 Sum_probs=35.1
Q ss_pred cccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEcC
Q 019472 264 SVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNR 309 (340)
Q Consensus 264 ~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~ 309 (340)
.++-+.||+.+|++.+.+-+.+.+|..+|-|. ...|.|.+.+
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d 180 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLADLRREGLIA----TAYRRVYLLD 180 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEE----EETTEEEECC
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----ecCCEEEEeC
Confidence 47889999999999999999999999998764 3356677764
No 478
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.93 E-value=3.2e+02 Score=24.53 Aligned_cols=91 Identities=12% Similarity=0.069 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChh
Q 019472 47 GESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWE 126 (340)
Q Consensus 47 ~~~~ir~~~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~~l~~~~~~~ 126 (340)
.++++.+....+-+=|+..||.++|.+++.++.. +...-++.-..+..++..++ .....+.+.-..+-+.
T Consensus 6 s~ee~~k~~~~ll~Ey~~~~d~~Ea~~ci~el~~----p~~~~~~v~~~i~~~le~~~--~~re~~~~Ll~~L~~~---- 75 (339)
T 1ug3_A 6 SEEELEKKSKAIIEEYLHLNDMKEAVQCVQELAS----PSLLFIFVRHGVESTLERSA--IAREHMGQLLHQLLCA---- 75 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCC----GGGHHHHHHHHHHHHTTTCH--HHHHHHHHHHHHHHHT----
T ss_pred CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCC----cccHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHC----
Confidence 3566777777788889999999999999877642 22333444444444544432 2222333322211110
Q ss_pred hhhHhhHHHHHhccccCCHHHHHHHHHhcccc
Q 019472 127 RKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 158 (340)
Q Consensus 127 ~~~~l~~~~gl~~l~~r~y~~Aa~~F~e~~~~ 158 (340)
-.+...++..+...+++..+.
T Consensus 76 -----------~~is~~~~~~Gf~~~~~~l~D 96 (339)
T 1ug3_A 76 -----------GHLSTAQYYQGLYEILELAED 96 (339)
T ss_dssp -----------TSSCHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCCHHHHHHHHHHHHhhChH
Confidence 123444567777777776554
No 479
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=23.63 E-value=92 Score=24.83 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=34.3
Q ss_pred HHHHHHHHhhhhhccccHHHHHHHh-----CCChHHHHHHHHHH
Q 019472 250 VRTVVYSQFLESYKSVTIEAMAKAF-----GVTVEFIDVELSRF 288 (340)
Q Consensus 250 ir~~~l~q~i~pYs~I~l~~mA~~~-----g~~~~~vE~~L~~l 288 (340)
-|...+.++++.....+.+.+++.| +++...+-+.|.+|
T Consensus 5 ~R~~~I~~li~~~~~~tq~eL~~~L~~~G~~VtqaTisRDL~eL 48 (149)
T 1b4a_A 5 QRHIKIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIKEM 48 (149)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCccHHHHHHHHHHcCCCcCHHHHHHHHHHc
Confidence 4777889999999999999999999 89998888887775
No 480
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=23.58 E-value=1.1e+02 Score=22.99 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=24.5
Q ss_pred hccccHHHHHHHhCCChHHHHHHHHHHh
Q 019472 262 YKSVTIEAMAKAFGVTVEFIDVELSRFI 289 (340)
Q Consensus 262 Ys~I~l~~mA~~~g~~~~~vE~~L~~lI 289 (340)
+.-.+.+.+|+.+|+|+..|...+.+..
T Consensus 36 ~~g~s~~EIA~~lgiS~~tV~~~l~ra~ 63 (113)
T 1s7o_A 36 ADDYSLAEIADEFGVSRQAVYDNIKRTE 63 (113)
T ss_dssp HTCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5678999999999999999998887765
No 481
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=23.50 E-value=1.1e+02 Score=26.17 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=39.3
Q ss_pred HHHhhhhh-ccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEE
Q 019472 255 YSQFLESY-KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLET 307 (340)
Q Consensus 255 l~q~i~pY-s~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~ 307 (340)
+..++... ..+++..||+.+|++...+-+.|..|...|-+.- |..+|....
T Consensus 11 iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~--~~~~~~Y~l 62 (241)
T 2xrn_A 11 IMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEA--LGPAGGFRL 62 (241)
T ss_dssp HHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEE--CGGGCEEEE
T ss_pred HHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--eCCCCeEEE
Confidence 45555444 3699999999999999999999999999998854 344455443
No 482
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=23.26 E-value=61 Score=21.79 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=17.1
Q ss_pred ccHHHHHHHhCCChHHHHHHH
Q 019472 265 VTIEAMAKAFGVTVEFIDVEL 285 (340)
Q Consensus 265 I~l~~mA~~~g~~~~~vE~~L 285 (340)
+++..+|+..|+|...|-+.|
T Consensus 1 ~T~~diA~~aGVS~sTVSrvL 21 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVI 21 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHH
Confidence 478999999999998765554
No 483
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=23.15 E-value=63 Score=20.20 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.6
Q ss_pred ccccHHHHHHHhCCChHHHHHHHH
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELS 286 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~ 286 (340)
...+...+|+.+|+|...+.+++.
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 567899999999999999887763
No 484
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=23.03 E-value=1.3e+02 Score=22.66 Aligned_cols=50 Identities=10% Similarity=0.200 Sum_probs=42.4
Q ss_pred hhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEcC
Q 019472 260 ESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNR 309 (340)
Q Consensus 260 ~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~ 309 (340)
-.|+-|+-..+++.|+++..-.-.-|.+|-..|.|.-..-.....|++..
T Consensus 55 pk~KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYTr~ 104 (108)
T 3u5c_Z 55 PTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYTRA 104 (108)
T ss_dssp SSCSSBSHHHHHHTTCCCTTHHHHHHHHHSSSSSCEEEECCSSCCEEECC
T ss_pred cCCeEEeHHHhhhhhhhhHHHHHHHHHHHHHCCCEEEEecCCCEEEEecC
Confidence 34899999999999999999999999999999999777655556677654
No 485
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=22.90 E-value=48 Score=22.19 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=20.3
Q ss_pred ccHHHHHHHhCCChHHHHHHHHHHhhCCc
Q 019472 265 VTIEAMAKAFGVTVEFIDVELSRFIAAGK 293 (340)
Q Consensus 265 I~l~~mA~~~g~~~~~vE~~L~~lI~~g~ 293 (340)
++.+.+|+.||+|...+.+|. ..|.
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~----~~G~ 27 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQ----EQGM 27 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHT----TTTC
T ss_pred cCHHHHHHHHCcCHHHHHHHH----HCCC
Confidence 678899999999999876665 4566
No 486
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=22.84 E-value=1.6e+02 Score=22.08 Aligned_cols=79 Identities=13% Similarity=0.066 Sum_probs=47.4
Q ss_pred chHHHHHHHHHh--ccHHHHHHHHHHhHH--HhhcChhHhhhHHHHHHHHHHHHHHHhhhhhccccHHHHHHHhCCChHH
Q 019472 205 PYLSEFLNSLYD--CQYKSFFSAFAGLTE--QIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEF 280 (340)
Q Consensus 205 p~l~~ll~af~~--~~~~~~~~~L~~~~~--~l~~D~~l~~h~~~l~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~ 280 (340)
|+..++...+.- ......+..+..-.. .+..|.|+++. . ++.+.. .+.++++....+++..+-+.+|+|.-.
T Consensus 21 ~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~~~~~~~~~--~-~~~~~~-~l~~~~~~~~~it~ae~Rd~lg~sRK~ 96 (121)
T 2pjp_A 21 WWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRYYRND--R-IVEFAN-MIRDLDQECGSTCAADFRDRLGVGRKL 96 (121)
T ss_dssp EEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEETTEEEEHH--H-HHHHHH-HHHHHHHHHSSEEHHHHHHHHTSCHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCCceECHH--H-HHHHHH-HHHHHHHHCCCccHHHHHHHHCCcHHH
Confidence 478887776652 334444444443322 24566666543 2 222222 246677778999999999999999885
Q ss_pred HHHHHHH
Q 019472 281 IDVELSR 287 (340)
Q Consensus 281 vE~~L~~ 287 (340)
+-..|.-
T Consensus 97 ai~lLE~ 103 (121)
T 2pjp_A 97 AIQILEY 103 (121)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544433
No 487
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=22.77 E-value=2.2e+02 Score=20.66 Aligned_cols=67 Identities=12% Similarity=0.031 Sum_probs=42.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCE--EEEcCCCcchHHHHHHHHhhHHHHHHHHHh
Q 019472 268 EAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV--LETNRPDAKNALYQATIKQGDFLLNRIQKL 334 (340)
Q Consensus 268 ~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~--l~~~~~~~r~~~y~~~l~~~~~l~~ri~~l 334 (340)
+.+++.++++...+-..|.+|-.+|-|...-+..+|- ....=++.-...++......+.+...+.++
T Consensus 30 ~~l~~~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~~~~~~~~~~~i~~~ 98 (108)
T 3l7w_A 30 QTIKLIASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYLTKEWSVYKMTIDGI 98 (108)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455557999999999999999999999887654552 111112333345555555555555555443
No 488
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=22.70 E-value=64 Score=23.64 Aligned_cols=38 Identities=16% Similarity=0.147 Sum_probs=29.6
Q ss_pred HHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhCCc
Q 019472 254 VYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGK 293 (340)
Q Consensus 254 ~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~ 293 (340)
++..++. -.+++..+|..+|++.+++..|...+-..|.
T Consensus 41 VV~~~~~--g~~s~~e~arry~Is~s~i~~W~r~~~~~G~ 78 (95)
T 2jrt_A 41 VVKAVIH--GLITEREALDRYSLSEEEFALWRSAVAAHGE 78 (95)
T ss_dssp HHHHHHT--TSSCHHHHHHHTTCCHHHHHHHHHHTTTCCT
T ss_pred HHHHHHc--CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhH
Confidence 3444433 4678999999999999999999998766653
No 489
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=22.64 E-value=2.3e+02 Score=20.70 Aligned_cols=41 Identities=7% Similarity=0.092 Sum_probs=34.6
Q ss_pred HHHhhhhhccccHHHHHH-HhCCChHHHHHHHHHHhhCCccc
Q 019472 255 YSQFLESYKSVTIEAMAK-AFGVTVEFIDVELSRFIAAGKLH 295 (340)
Q Consensus 255 l~q~i~pYs~I~l~~mA~-~~g~~~~~vE~~L~~lI~~g~l~ 295 (340)
+..++.-...++++.+|+ .++++...+-+-+--|+.+|-+.
T Consensus 21 iL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe 62 (95)
T 1bja_A 21 ILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKKGLVE 62 (95)
T ss_dssp HHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHHHCCCee
Confidence 344444344899999999 99999999999999999999998
No 490
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=22.63 E-value=93 Score=30.70 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=37.2
Q ss_pred HHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHHHhhC
Q 019472 250 VRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAA 291 (340)
Q Consensus 250 ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~ 291 (340)
.+...+..++.-...|+...+|+.+|++...+.+.|.+|...
T Consensus 430 ~~~~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~ 471 (583)
T 3lmm_A 430 YRIAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQT 471 (583)
T ss_dssp HHHHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhh
Confidence 345667888888889999999999999999999999999883
No 491
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=22.62 E-value=42 Score=27.61 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=0.0
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEcCC
Q 019472 263 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 310 (340)
Q Consensus 263 s~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~~ 310 (340)
-.++-+.||+.+|++.+.+-+.+.+|..+|-|. ...|.|.+.++
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I~----~~~~~i~I~d~ 206 (213)
T 1o5l_A 163 LPVTLEELSRLFGCARPALSRVFQELEREGYIE----KHGRRIKVLKN 206 (213)
T ss_dssp ------------------------------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCeEE----EcCCEEEEech
Confidence 367899999999999999999999998888763 33455666543
No 492
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=22.51 E-value=75 Score=26.30 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=33.8
Q ss_pred ccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEecCCCEEEEcCC
Q 019472 265 VTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 310 (340)
Q Consensus 265 I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~~~g~l~~~~~ 310 (340)
++-+.||..+|++.+.+-+.+.+|-.+| | . ...|.|.+.++
T Consensus 179 ~t~~~iA~~lg~sr~tvsR~l~~L~~~g-i--~--~~~~~i~I~d~ 219 (237)
T 3fx3_A 179 YDKMLIAGRLGMKPESLSRAFSRLKAAG-V--T--VKRNHAEIEDI 219 (237)
T ss_dssp SCTHHHHHHTTCCHHHHHHHHHHHGGGT-E--E--CCTTEEEESCH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCC-e--E--eeCCEEEEcCH
Confidence 4568999999999999999999999999 6 3 34577877643
No 493
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=22.45 E-value=21 Score=21.76 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=20.1
Q ss_pred cccHHHHHHHhCCChHHHHHHHHH
Q 019472 264 SVTIEAMAKAFGVTVEFIDVELSR 287 (340)
Q Consensus 264 ~I~l~~mA~~~g~~~~~vE~~L~~ 287 (340)
..+...+|+.+|++...+-+++.+
T Consensus 21 g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 21 GHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp TCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 478999999999999988777643
No 494
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=22.26 E-value=2.1e+02 Score=23.14 Aligned_cols=59 Identities=8% Similarity=0.039 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHH
Q 019472 55 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS 117 (340)
Q Consensus 55 ~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~i~~~i~~~~~~~~~~~i~ka~~ 117 (340)
..+.|.+ .+++|.++|-+.|..++..|..- .-+.+.-.+..+-.||...+...+.+|-.
T Consensus 64 WIrYA~~-~ei~D~d~aR~vy~~a~~~hKkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 64 QVRFAEL-KAIQEPDDARDYFQMARANCKKF---AFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp HHHHHHH-HHHHCGGGCHHHHHHHHHHCTTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHhcCHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 4455655 67799999999999887655332 22334445666678999999998888766
No 495
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=22.08 E-value=1.4e+02 Score=29.24 Aligned_cols=55 Identities=22% Similarity=0.253 Sum_probs=43.6
Q ss_pred hcChhHhhhHHHHHHHHHHHHHHHhhhhhccccHH-HHHHHhCCChHHHHHHHHHH
Q 019472 234 KLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIE-AMAKAFGVTVEFIDVELSRF 288 (340)
Q Consensus 234 ~~D~~l~~h~~~l~~~ir~~~l~q~i~pYs~I~l~-~mA~~~g~~~~~vE~~L~~l 288 (340)
..|+-|+.-++.-....-.-+|..|++-|..++.. .-.+-+..+++++|..|.+|
T Consensus 511 VpD~~LR~~Lr~~i~~~v~paY~~F~~r~~~~~~~k~~~KyiKytpe~le~~L~~L 566 (571)
T 2pft_A 511 IPDTEQRDKIRQAQKDIVKETYGAFLHRYGSVPFTKNPEKYIKYRVEQVGDMIDRL 566 (571)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSCHHHHCCCCHHHHHHHHHTS
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCCCCccccCHHHHHHHHHHH
Confidence 46888888888777777777888888888887663 35567789999999988764
No 496
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=21.83 E-value=1.7e+02 Score=22.09 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhhhhccccHHHHHHHhCCChHHHHHHHHH
Q 019472 247 MREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSR 287 (340)
Q Consensus 247 ~~~ir~~~l~q~i~pYs~I~l~~mA~~~g~~~~~vE~~L~~ 287 (340)
....+...+.+++.-...++++.+|..+|+|+..+.+...+
T Consensus 76 ~~~~~l~~a~~~i~~~~~~sl~~lA~~~g~S~~~f~r~Fk~ 116 (133)
T 1u8b_A 76 HRLDKITHACRLLEQETPVTLEALADQVAMSPFHLHRLFKA 116 (133)
T ss_dssp HHHHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 33444455566665357899999999999998777665543
No 497
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=21.80 E-value=68 Score=19.35 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=14.5
Q ss_pred cHHHHHHHhCCChHHHHH
Q 019472 266 TIEAMAKAFGVTVEFIDV 283 (340)
Q Consensus 266 ~l~~mA~~~g~~~~~vE~ 283 (340)
++..+|+.+|++.+++.+
T Consensus 12 tl~~Ia~~~~~~~~~l~~ 29 (48)
T 1e0g_A 12 SLSSIAKRHGVNIKDVMR 29 (48)
T ss_dssp CHHHHHHHHTCCHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHH
Confidence 578999999999877543
No 498
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=21.74 E-value=61 Score=26.14 Aligned_cols=31 Identities=13% Similarity=0.083 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHhhh
Q 019472 52 REAHLAKSLFYIQIG-----------DKEKALEQLKVTESKT 82 (340)
Q Consensus 52 r~~~~~La~~~~~~G-----------d~~~A~~~l~~~~~~~ 82 (340)
-.+++.||..|.+.| ++++|.++|.+..+.-
T Consensus 80 ~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 80 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 456778999998875 8999999988877654
No 499
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=21.68 E-value=2.4e+02 Score=21.01 Aligned_cols=60 Identities=5% Similarity=0.031 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHHHHHhh-hhhccccHHHHHHHhCCChHHHHHHHHHHhhCCccceEEec
Q 019472 241 PHFRYYMREVRTVVYSQFL-ESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDK 300 (340)
Q Consensus 241 ~h~~~l~~~ir~~~l~q~i-~pYs~I~l~~mA~~~g~~~~~vE~~L~~lI~~g~l~akID~ 300 (340)
.+....|-.+|..++..|- .|...+++......+.-++..+-+...=|=.=|-|+--+|+
T Consensus 43 ~ktpe~Yl~iRN~iI~~yr~nP~~yLT~t~~r~~l~gDv~~i~RVh~FLe~wGLIN~~v~~ 103 (104)
T 2fq3_A 43 SKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSGDAAALFRLHKFLTKWGLINYQVDS 103 (104)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHSCSCHHHHHHHHHHHHHTTSSSSCC--
T ss_pred CCCHHHHHHHHHHHHHHHHhCCceeeeHHHHHHHccccHHHHHHHHHHHHHcCeeccCCCC
Confidence 4567999999999999996 49999999999999987887777766555556666655553
No 500
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=21.65 E-value=1.3e+02 Score=32.14 Aligned_cols=91 Identities=13% Similarity=0.065 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHH-HHHHHH------------hcCHHHHHh-HHHHHHHHHh
Q 019472 55 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYT-LQLGFF------------YMDFDLISK-SIDKAKSLFE 120 (340)
Q Consensus 55 ~~~La~~~~~~Gd~~~A~~~l~~~~~~~~~~~~~i~~~l~~-i~~~i~------------~~~~~~~~~-~i~ka~~~l~ 120 (340)
+.++.+.+.+.|+|++|...+...-+.- .+-+ |+.. +..-.. .|..+.+.. ...||+...+
T Consensus 941 ~~~iFk~~L~l~~ye~Ay~aL~~~pd~~----~r~~-cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~ 1015 (1139)
T 4fhn_B 941 THETLKTACAAGKFDAAHVALMVLSTTP----LKKS-CLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMIN 1015 (1139)
T ss_dssp HHHHHHHHHHHCCSGGGGHHHHHHHHSS----SCHH-HHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCHHHHHHHHHhCCCHH----HHHH-HHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCc
Confidence 6688999999999999999987654321 1111 1111 111111 233344433 2334444321
Q ss_pred cCCChhhhhHhhHHHHH--hccccCCHHHHHHHHHhcc
Q 019472 121 EGGDWERKNRLKVYEGL--YCMSTRNFKKAASLFLDSI 156 (340)
Q Consensus 121 ~~~~~~~~~~l~~~~gl--~~l~~r~y~~Aa~~F~e~~ 156 (340)
- .+....|.-+ +++..+||..||.-.|+-.
T Consensus 1016 ~------~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 1016 V------ESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp H------CCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred c------ccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence 1 1112234444 3567899999999998853
Done!