Query 019473
Match_columns 340
No_of_seqs 274 out of 1230
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 09:45:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019473.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019473hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2881 Predicted membrane pro 100.0 4.4E-47 9.5E-52 357.5 13.4 191 137-337 64-276 (294)
2 COG2119 Predicted membrane pro 100.0 1.8E-44 4E-49 325.5 16.0 168 140-337 2-170 (190)
3 COG2119 Predicted membrane pro 99.9 7.4E-24 1.6E-28 192.0 11.5 114 98-234 71-185 (190)
4 PF01169 UPF0016: Uncharacteri 99.9 3.8E-22 8.3E-27 158.3 4.9 76 142-227 1-78 (78)
5 PF01169 UPF0016: Uncharacteri 99.8 1E-20 2.2E-25 150.2 5.6 68 270-337 1-70 (78)
6 KOG2881 Predicted membrane pro 99.8 1.1E-20 2.5E-25 179.1 4.7 137 87-234 126-291 (294)
7 COG4280 Predicted membrane pro 97.2 0.0025 5.4E-08 59.9 9.6 158 160-336 20-183 (236)
8 TIGR02840 spore_YtaF putative 96.5 0.031 6.7E-07 51.8 10.8 49 180-238 38-86 (206)
9 PRK11469 hypothetical protein; 95.2 0.055 1.2E-06 49.6 6.6 44 183-237 48-91 (188)
10 PF01810 LysE: LysE type trans 95.0 0.3 6.5E-06 43.2 10.6 69 160-236 12-83 (191)
11 PF03596 Cad: Cadmium resistan 91.4 0.85 1.8E-05 42.3 7.6 52 171-233 25-76 (191)
12 COG1971 Predicted membrane pro 91.1 0.8 1.7E-05 42.7 7.2 24 215-238 69-92 (190)
13 TIGR00948 2a75 L-lysine export 89.2 4.2 9.2E-05 35.9 10.0 67 161-235 11-78 (177)
14 PF03741 TerC: Integral membra 89.0 5.1 0.00011 36.7 10.6 148 155-329 12-164 (183)
15 TIGR00145 FTR1 family protein. 88.7 5.7 0.00012 38.9 11.3 60 171-233 38-97 (283)
16 PF01914 MarC: MarC family int 88.1 3.5 7.6E-05 38.2 9.0 105 214-335 71-178 (203)
17 COG0730 Predicted permeases [G 86.7 3.5 7.6E-05 38.4 8.2 152 174-336 71-238 (258)
18 PF03239 FTR1: Iron permease F 84.4 12 0.00025 36.7 11.0 155 171-332 35-197 (306)
19 PF01810 LysE: LysE type trans 82.2 8.7 0.00019 33.8 8.4 20 214-233 171-190 (191)
20 COG1971 Predicted membrane pro 82.2 3.5 7.5E-05 38.6 6.0 43 182-235 146-188 (190)
21 PF01925 TauE: Sulfite exporte 81.1 5.3 0.00011 36.2 6.7 34 303-336 195-228 (240)
22 PRK10621 hypothetical protein; 80.7 28 0.00061 32.9 11.7 50 174-233 75-124 (266)
23 TIGR00949 2A76 The Resistance 80.0 9.5 0.00021 33.6 7.8 65 161-233 8-75 (185)
24 PRK10995 inner membrane protei 77.8 6 0.00013 37.0 6.1 21 215-235 76-96 (221)
25 PRK11469 hypothetical protein; 77.1 8.2 0.00018 35.5 6.7 42 182-234 144-185 (188)
26 TIGR03718 R_switched_Alx integ 76.8 32 0.0007 34.3 11.2 40 155-195 77-121 (302)
27 TIGR03716 R_switched_YkoY inte 76.2 7.4 0.00016 36.8 6.3 125 169-327 26-152 (215)
28 PRK09304 arginine exporter pro 72.6 30 0.00066 31.5 9.2 66 161-234 25-91 (207)
29 TIGR03716 R_switched_YkoY inte 68.5 19 0.00042 34.0 7.1 71 150-235 100-175 (215)
30 TIGR03717 R_switched_YjbE inte 66.6 46 0.001 30.3 9.0 135 155-327 14-154 (176)
31 PRK10520 rhtB homoserine/homos 65.2 92 0.002 28.1 10.7 70 157-234 22-94 (205)
32 TIGR03717 R_switched_YjbE inte 63.3 50 0.0011 30.1 8.6 50 171-233 126-175 (176)
33 COG1280 RhtB Putative threonin 63.3 1.2E+02 0.0027 27.8 11.4 71 154-234 20-94 (208)
34 COG4300 CadD Predicted permeas 62.1 63 0.0014 30.6 9.0 69 156-235 18-89 (205)
35 PF03741 TerC: Integral membra 61.2 47 0.001 30.4 8.1 76 140-233 103-183 (183)
36 COG0861 TerC Membrane protein 59.6 86 0.0019 30.5 9.9 162 144-328 18-191 (254)
37 PRK10019 nickel/cobalt efflux 58.2 45 0.00097 32.9 7.8 49 274-329 197-245 (279)
38 TIGR00779 cad cadmium resistan 57.9 24 0.00053 33.0 5.6 55 168-233 21-75 (193)
39 PRK10958 leucine export protei 57.3 1.2E+02 0.0026 27.8 10.1 73 154-235 24-99 (212)
40 PRK10229 threonine efflux syst 57.3 39 0.00084 30.4 6.8 73 153-234 18-93 (206)
41 TIGR00427 membrane protein, Ma 54.6 14 0.00029 34.4 3.4 20 214-233 74-93 (201)
42 TIGR02840 spore_YtaF putative 48.0 24 0.00052 32.8 3.9 25 88-113 58-82 (206)
43 TIGR00704 NaPi_cotrn_rel Na/Pi 46.0 1E+02 0.0023 30.6 8.3 102 216-328 131-237 (307)
44 PF12270 Cyt_c_ox_IV: Cytochro 45.3 49 0.0011 29.6 5.3 19 297-315 107-125 (137)
45 COG4280 Predicted membrane pro 43.3 34 0.00074 32.8 4.2 51 285-336 17-69 (236)
46 PRK11111 hypothetical protein; 43.2 56 0.0012 30.7 5.7 135 178-337 49-186 (214)
47 KOG1397 Ca2+/H+ antiporter VCX 40.3 81 0.0017 33.0 6.6 20 154-173 136-155 (441)
48 COG2095 MarC Multiple antibiot 39.3 87 0.0019 29.4 6.2 22 215-236 75-96 (203)
49 PRK10323 cysteine/O-acetylseri 38.5 3E+02 0.0065 24.8 12.1 70 156-233 21-93 (195)
50 PF01914 MarC: MarC family int 33.6 1.5E+02 0.0032 27.5 6.8 74 155-235 123-199 (203)
51 COG3763 Uncharacterized protei 32.2 56 0.0012 26.3 3.2 28 307-334 7-34 (71)
52 KOG2325 Predicted transporter/ 31.5 6E+02 0.013 27.1 11.5 60 267-326 265-329 (488)
53 PRK10599 calcium/sodium:proton 30.4 4.6E+02 0.0099 27.0 10.1 28 299-326 287-315 (366)
54 COG1283 NptA Na+/phosphate sym 30.3 2.8E+02 0.0061 30.0 8.9 94 214-319 7-105 (533)
55 PRK09304 arginine exporter pro 29.9 3.6E+02 0.0078 24.5 8.6 23 214-236 182-204 (207)
56 COG2814 AraJ Arabinose efflux 29.2 4.8E+02 0.01 27.0 10.1 22 174-195 142-163 (394)
57 TIGR00997 ispZ intracellular s 28.0 1.2E+02 0.0025 28.1 5.0 46 176-233 23-68 (178)
58 PRK10739 putative antibiotic t 27.4 1.6E+02 0.0036 27.3 5.9 20 214-233 71-90 (197)
59 KOG3415 Putative Rab5-interact 27.0 2.9E+02 0.0063 24.4 6.9 17 152-168 33-49 (129)
60 KOG1278 Endosomal membrane pro 26.0 3.3E+02 0.0072 29.9 8.5 126 174-329 332-461 (628)
61 COG1283 NptA Na+/phosphate sym 23.3 4.1E+02 0.0088 28.8 8.6 84 100-188 14-102 (533)
62 PF02659 DUF204: Domain of unk 23.1 93 0.002 23.3 2.9 35 182-227 33-67 (67)
63 PF03596 Cad: Cadmium resistan 22.8 1.2E+02 0.0025 28.3 4.1 40 298-338 24-64 (191)
64 PRK00259 intracellular septati 21.8 1.9E+02 0.004 26.7 5.1 46 175-232 22-67 (179)
65 PF06166 DUF979: Protein of un 20.9 8.8E+02 0.019 24.6 12.1 17 220-236 54-70 (308)
No 1
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=4.4e-47 Score=357.55 Aligned_cols=191 Identities=41% Similarity=0.620 Sum_probs=162.2
Q ss_pred chhHHHHHHHHHHHHHhcCchHHHHHHHHHhccCCcEeehhHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhH
Q 019473 137 DISRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDD 216 (340)
Q Consensus 137 ~~~~~f~~aF~liFLAElGDKTQLati~LAar~~~~~Vf~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~ 216 (340)
++..+|..++.|||++|+||||+|++++|||||+|..||.|++.|+++||+|++++|+. .+..+|+++ ++
T Consensus 64 s~~~~f~~SiSmI~vsEiGDKTFfiAAlmAmr~~R~~Vf~Ga~~AL~lMTiLS~~lG~a---ap~lipr~~-------T~ 133 (294)
T KOG2881|consen 64 SFLQGFTASISMIFVSEIGDKTFFIAALMAMRYPRLTVFSGAMSALALMTILSVLLGWA---APNLIPRKY-------TY 133 (294)
T ss_pred HHHHHHHHhhheeeeeeccchHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHh---hhhhchHHH-------HH
Confidence 57899999999999999999999999999999999999999999999999999999997 457889887 89
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCC--chhHHHHHHHhhhhccCC----------Cccch---------hhH-HHHHHHH
Q 019473 217 IAAVCLLVYFGVSTLLDAASTDGLK--SEDEQKEAELAVSEFSGN----------GAGII---------AAA-STIISTF 274 (340)
Q Consensus 217 i~aa~LFl~FG~~~L~~a~~~~~~~--~eeE~~eae~~v~~~~~~----------~~g~~---------~~~-~~f~~aF 274 (340)
+++++||++||+|+|+|+|++.+.+ +|-|+.|+|++.++.+.+ ..+.. ..+ +.|+++|
T Consensus 134 ~~~t~LF~iFGlkmL~eg~~~~~~~~~eE~eEVe~el~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~t~ffspifikaF 213 (294)
T KOG2881|consen 134 YLATALFLIFGLKMLKEGWEMSPSEGQEELEEVEAELAKREDELDRLEEGLPGSAETGSQKSKFRRKLTLFFSPIFIKAF 213 (294)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHhccchhhhhhhcCCCCCccchhhhhhhHHHHHhccHHHHHHH
Confidence 9999999999999999998754433 333444555543221111 01100 011 4789999
Q ss_pred HHHHHHHhCChhHHHHHHHhcccCCceeehHHHHHHHHHHHHHHHHHHHhhhcccHhHHhhcc
Q 019473 275 TLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYSNFN 337 (340)
Q Consensus 275 ~l~FLAE~GDKTQLaTiaLAA~~~p~~V~~Ga~lg~~l~t~laVl~G~~l~~~is~r~i~~~~ 337 (340)
.++|++||||||||+||+|||+.||++|++|+.+||.+||.+||++|+++++|||+|+|..+|
T Consensus 214 sltF~aEwGDRSQlaTI~laA~en~~gV~~G~~iGH~lCT~lAVigGk~lAskIS~rtVt~~g 276 (294)
T KOG2881|consen 214 SLTFLAEWGDRSQLATIALAADENPLGVAIGAIIGHALCTGLAVIGGKYLASKISVRTVTLIG 276 (294)
T ss_pred HHHHHHHhccHHHHHHHHHhcccCcceeeeccHHHHHHHHHHHHhhhHHHhhhheeEEEEEec
Confidence 999999999999999999999999999999999999999999999999999999999987765
No 2
>COG2119 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.8e-44 Score=325.55 Aligned_cols=168 Identities=36% Similarity=0.512 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHhccCCcEeehhHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHHHH
Q 019473 140 RGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAA 219 (340)
Q Consensus 140 ~~f~~aF~liFLAElGDKTQLati~LAar~~~~~Vf~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~a 219 (340)
+.++.+.++|+++|+||||||++++||+||+|++|+.|+.+|++.||++++++|++ .+..+|+++ .++.+
T Consensus 2 ~~~~~s~~~v~laEiGDKT~lia~llA~r~~~~~v~~g~~~a~~~m~~la~~vG~~---~~~~~~~~~-------~~~~~ 71 (190)
T COG2119 2 EALLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHA---AASLLPERP-------LAWAS 71 (190)
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH---HhccCchhH-------HHHHH
Confidence 57889999999999999999999999999998889999999999999999999998 577889987 78899
Q ss_pred HHHHHHHHHHHhhhcccCCCCCchhHHHHHHHhhhhccCCCccchhhHHHHHHHHHHHHHHHhCChhHHHHHHHhcccC-
Q 019473 220 VCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAASS- 298 (340)
Q Consensus 220 a~LFl~FG~~~L~~a~~~~~~~~eeE~~eae~~v~~~~~~~~g~~~~~~~f~~aF~l~FLAE~GDKTQLaTiaLAA~~~- 298 (340)
+.+|++||+|+++|+. +++|+.+. .+ +..+|+++|+++|++||||||||+||+||++++
T Consensus 72 ~~~Flafav~~l~edk------~~~~e~~~------~~--------~~~~f~~tfi~~FlaE~GDKTQiATIaLaA~~~~ 131 (190)
T COG2119 72 GVLFLAFAVWMLIEDK------EDDEEAQA------AS--------PRGVFVTTFITFFLAELGDKTQIATIALAADYHS 131 (190)
T ss_pred HHHHHHHHHHHhcccc------cccccccc------cc--------cccHHHHHHHHHHHHHhccHHHHHHHHHhhcCCC
Confidence 9999999999999832 22222110 01 124899999999999999999999999999985
Q ss_pred CceeehHHHHHHHHHHHHHHHHHHHhhhcccHhHHhhcc
Q 019473 299 PLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYSNFN 337 (340)
Q Consensus 299 p~~V~~Ga~lg~~l~t~laVl~G~~l~~~is~r~i~~~~ 337 (340)
||.|++|+++||++|++++|++|+++++|+|+|.++.++
T Consensus 132 ~~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~a 170 (190)
T COG2119 132 PWAVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIA 170 (190)
T ss_pred ceeeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 699999999999999999999999999999999999764
No 3
>COG2119 Predicted membrane protein [Function unknown]
Probab=99.90 E-value=7.4e-24 Score=191.98 Aligned_cols=114 Identities=26% Similarity=0.357 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHhcCCcccccccccccCCCCcccCCCCcchhHHHHHHHHHHHHHhcCchHHHHHHHHHhccCCcE-eeh
Q 019473 98 LIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFASAFLLIFFSELGDKTFFIAALLAARNSAAT-VFA 176 (340)
Q Consensus 98 ~~~lFl~FGl~tLr~a~~~~~~sd~~~~~~~~~~~g~~~~~~~~f~~aF~liFLAElGDKTQLati~LAar~~~~~-Vf~ 176 (340)
...+|++||+|+++++..+.++.+ . .+.++.|+++|+++|++|||||||++|++||++|+.++ ||+
T Consensus 71 ~~~~Flafav~~l~edk~~~~e~~-------~------~~~~~~f~~tfi~~FlaE~GDKTQiATIaLaA~~~~~~~V~~ 137 (190)
T COG2119 71 SGVLFLAFAVWMLIEDKEDDEEAQ-------A------ASPRGVFVTTFITFFLAELGDKTQIATIALAADYHSPWAVFA 137 (190)
T ss_pred HHHHHHHHHHHHhccccccccccc-------c------cccccHHHHHHHHHHHHHhccHHHHHHHHHhhcCCCceeeeh
Confidence 358999999999999865444322 1 12346999999999999999999999999999999854 999
Q ss_pred hHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHHHHHhhhc
Q 019473 177 GTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 234 (340)
Q Consensus 177 Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~~L~~a 234 (340)
|+++||+++++++|++|++ +++++|+|. .+.+++++|++||+..+|+.
T Consensus 138 Gt~lg~~l~s~laVl~G~~---ia~ki~~r~-------l~~~aallFl~fal~~~~~~ 185 (190)
T COG2119 138 GTTLGMILASVLAVLLGKL---IAGKLPERL-------LRFIAALLFLIFALVLLWQV 185 (190)
T ss_pred hhHHHHHHHHHHHHHHHHH---HHccCCHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997 789999997 78999999999999999974
No 4
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=99.85 E-value=3.8e-22 Score=158.32 Aligned_cols=76 Identities=43% Similarity=0.602 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHhcc--CCcEeehhHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHHHH
Q 019473 142 FASAFLLIFFSELGDKTFFIAALLAARN--SAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAA 219 (340)
Q Consensus 142 f~~aF~liFLAElGDKTQLati~LAar~--~~~~Vf~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~a 219 (340)
|+++|.++|++|||||||++|+.||+|| +++.|++|+++|++++|+++|++|++ +.+++|+++ +++++
T Consensus 1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~---l~~~ip~~~-------i~~~~ 70 (78)
T PF01169_consen 1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSW---LASRIPERY-------IKWVA 70 (78)
T ss_pred CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCHHH-------HHHHH
Confidence 6789999999999999999999999999 45569999999999999999999997 789999998 78999
Q ss_pred HHHHHHHH
Q 019473 220 VCLLVYFG 227 (340)
Q Consensus 220 a~LFl~FG 227 (340)
+++|++||
T Consensus 71 ~~lFl~fG 78 (78)
T PF01169_consen 71 GALFLLFG 78 (78)
T ss_pred HHHHHHHC
Confidence 99999997
No 5
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=99.82 E-value=1e-20 Score=150.23 Aligned_cols=68 Identities=41% Similarity=0.532 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHhccc--CCceeehHHHHHHHHHHHHHHHHHHHhhhcccHhHHhhcc
Q 019473 270 IISTFTLVFVAEWGDKSFFSTIALAAAS--SPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYSNFN 337 (340)
Q Consensus 270 f~~aF~l~FLAE~GDKTQLaTiaLAA~~--~p~~V~~Ga~lg~~l~t~laVl~G~~l~~~is~r~i~~~~ 337 (340)
|+++|.++|++|||||||++|++||++| +|+.|++|+++|++++++++|++|+++.+++|++++++++
T Consensus 1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~ 70 (78)
T PF01169_consen 1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERYIKWVA 70 (78)
T ss_pred CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 5789999999999999999999999999 8999999999999999999999999999999999999864
No 6
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=99.81 E-value=1.1e-20 Score=179.05 Aligned_cols=137 Identities=21% Similarity=0.232 Sum_probs=106.4
Q ss_pred cccCCcccchhHHHHHHHHHHHHhcCCccccccc--cc-ccCCC-------C-------ccc---CCCC---------cc
Q 019473 87 ESVHNLANDSGLIKFVMFFGLLTLQGSQTAVAAV--DF-ASGLQ-------S-------FPF---LGDL---------GD 137 (340)
Q Consensus 87 ~~~~~~~~~~~~~~lFl~FGl~tLr~a~~~~~~s--d~-~~~~~-------~-------~~~---~g~~---------~~ 137 (340)
..+...+||.+. +||++||+|+|+++..+.+.. ++ +|.++ + .+. .+.. ..
T Consensus 126 lipr~~T~~~~t-~LF~iFGlkmL~eg~~~~~~~~~eE~eEVe~el~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~t~f 204 (294)
T KOG2881|consen 126 LIPRKYTYYLAT-ALFLIFGLKMLKEGWEMSPSEGQEELEEVEAELAKREDELDRLEEGLPGSAETGSQKSKFRRKLTLF 204 (294)
T ss_pred hchHHHHHHHHH-HHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHhccchhhhhhhcCCCCCccchhhhhhhHHHHHh
Confidence 335667788885 999999999999885443211 11 00000 0 000 0100 01
Q ss_pred hhHHHHHHHHHHHHHhcCchHHHHHHHHHhccCCcEeehhHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHH
Q 019473 138 ISRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDI 217 (340)
Q Consensus 138 ~~~~f~~aF~liFLAElGDKTQLati~LAar~~~~~Vf~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i 217 (340)
+...|+.+|.++|++|||||+||+|++||++-+++.|++|+.+|+.+||.+||+.|+. ++++|++|. +.+
T Consensus 205 fspifikaFsltF~aEwGDRSQlaTI~laA~en~~gV~~G~~iGH~lCT~lAVigGk~---lAskIS~rt-------Vt~ 274 (294)
T KOG2881|consen 205 FSPIFIKAFSLTFLAEWGDRSQLATIALAADENPLGVAIGAIIGHALCTGLAVIGGKY---LASKISVRT-------VTL 274 (294)
T ss_pred ccHHHHHHHHHHHHHHhccHHHHHHHHHhcccCcceeeeccHHHHHHHHHHHHhhhHH---HhhhheeEE-------EEE
Confidence 3468999999999999999999999999999999999999999999999999999996 899999997 578
Q ss_pred HHHHHHHHHHHHHhhhc
Q 019473 218 AAVCLLVYFGVSTLLDA 234 (340)
Q Consensus 218 ~aa~LFl~FG~~~L~~a 234 (340)
+++++|+.||+..++.+
T Consensus 275 ~ggi~Fi~Fgl~~i~~~ 291 (294)
T KOG2881|consen 275 IGGILFIIFGLVYIFQG 291 (294)
T ss_pred ecchhHHHHHHHHHhcC
Confidence 89999999999999873
No 7
>COG4280 Predicted membrane protein [Function unknown]
Probab=97.19 E-value=0.0025 Score=59.88 Aligned_cols=158 Identities=25% Similarity=0.316 Sum_probs=97.7
Q ss_pred HHHHHHHhc--cCCcEeehhHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHHHHHhhhcccC
Q 019473 160 FIAALLAAR--NSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAST 237 (340)
Q Consensus 160 Lati~LAar--~~~~~Vf~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~~L~~a~~~ 237 (340)
..+++.+-. |++..-+.|+.+|+++.-.++.++|..+ ..+|-.+ .+++++++.+.||-.-++.+.+.
T Consensus 20 a~aIa~avg~~~~wr~al~ga~lglalvl~l~lvlGk~L----~lvPln~-------lqiv~gvLLllFG~rw~Rsavrr 88 (236)
T COG4280 20 AGAIAAAVGNIYKWRLALIGAVLGLALVLILTLVLGKLL----YLVPLNY-------LQIVSGVLLLLFGYRWIRSAVRR 88 (236)
T ss_pred HHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHccce----eeeechH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344544443 3344489999999999999999999973 5678876 68999999999999888876431
Q ss_pred -CCC-CchhHHH-HHHHhhhhccCCCccchhhHHHHHHHHHHHHHHHhCChhHHHHHHHhccc-CCceeehHHHHHHHHH
Q 019473 238 -DGL-KSEDEQK-EAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAAS-SPLGVIGGALAGHVVA 313 (340)
Q Consensus 238 -~~~-~~eeE~~-eae~~v~~~~~~~~g~~~~~~~f~~aF~l~FLAE~GDKTQLaTiaLAA~~-~p~~V~~Ga~lg~~l~ 313 (340)
.+. +-.+||+ |+....++ +. .|. + .-.++.+|-.+-+ | |=---+..|+|.+.+ .+..-..|+..+..+.
T Consensus 89 ~ag~rkg~~ee~leE~~~ldq-~e--~g~-~-~la~l~~fk~v~L-e-glEv~~iVialgaa~sqwleAi~gagfA~vlv 161 (236)
T COG4280 89 FAGIRKGGGEEKLEEGIVLDQ-EE--EGF-S-KLALLVVFKVVAL-E-GLEVSLIVIALGAASSQWLEAIMGAGFASVLV 161 (236)
T ss_pred HhchhccCchhhHhhhhhccc-cc--ccc-h-hhhHHHHhHHHHH-h-hheeeeeeeeechhhhHHHHHHHHHHHHHHHH
Confidence 111 1111222 22221111 11 121 1 1123344422222 1 222334566666655 4666778888888888
Q ss_pred HHHHHHHHHHhhhcccHhHHhhc
Q 019473 314 TLLAVLGGSLLGTFLSEKVYSNF 336 (340)
Q Consensus 314 t~laVl~G~~l~~~is~r~i~~~ 336 (340)
-.++.++-..++| +|++.+|..
T Consensus 162 lvl~~~lh~plar-vpe~~lKfv 183 (236)
T COG4280 162 LVLTAILHSPLAR-VPEPHLKFV 183 (236)
T ss_pred HHHHHHhccHHhh-CCchhHHHH
Confidence 8888888888855 999988864
No 8
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=96.47 E-value=0.031 Score=51.77 Aligned_cols=49 Identities=20% Similarity=0.379 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHHHHHhhhcccCC
Q 019473 180 GALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTD 238 (340)
Q Consensus 180 lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~~L~~a~~~~ 238 (340)
+...+|+.++..+|+. +.+.+|.++ .++++++++++.|+++++|+++.+
T Consensus 38 ~~~~~~~~lg~~~G~~---~~~~i~~~~-------~~~ig~~iLi~iG~~mi~~~~~~~ 86 (206)
T TIGR02840 38 VISGLFIFISMLLGKF---LAKFLPPKV-------TEILGAFILIAIGIWIIYNAFRPK 86 (206)
T ss_pred HHHHHHHHHHHHHHHH---HHHHhchhh-------HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445889999999987 677888765 689999999999999999998643
No 9
>PRK11469 hypothetical protein; Provisional
Probab=95.19 E-value=0.055 Score=49.62 Aligned_cols=44 Identities=14% Similarity=0.259 Sum_probs=35.0
Q ss_pred HHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHHHHHhhhcccC
Q 019473 183 AAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAST 237 (340)
Q Consensus 183 ~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~~L~~a~~~ 237 (340)
.+|..++-.+|+. +.+.+|. + .++++.++.++.|.||++|+++.
T Consensus 48 ~~m~~~g~~~G~~---l~~~i~~-~-------~~~i~~~lL~~lG~~mi~e~~~~ 91 (188)
T PRK11469 48 TLTPLIGWGMGML---ASRFVLE-W-------NHWIAFVLLIFLGGRMIIEGFRG 91 (188)
T ss_pred HHHHHHHHHHHHH---HHHHHHH-H-------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 5777788888886 5566665 4 68899999999999999998863
No 10
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=95.02 E-value=0.3 Score=43.16 Aligned_cols=69 Identities=17% Similarity=0.144 Sum_probs=49.0
Q ss_pred HHHHHHHhccCCcE---eehhHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHHHHHhhhccc
Q 019473 160 FIAALLAARNSAAT---VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAS 236 (340)
Q Consensus 160 Lati~LAar~~~~~---Vf~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~~L~~a~~ 236 (340)
+..+-.++++++.. +.+|..++-++...++++.-.. +.+..|.-. .+.++++++.++.+|..++++..+
T Consensus 12 ~~~i~~~~~~G~~~~~~~~~G~~~~~~i~~~~~~~g~~~---l~~~~~~~~-----~~l~~~G~~~L~~lg~~~~~~~~~ 83 (191)
T PF01810_consen 12 LLVISNGLRKGFKAGLPVALGAALGDLIYILLAVFGLSA---LLKSSPWLF-----MILKLLGALYLLYLGYKLLRSKFS 83 (191)
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhChHHH-----HHHHHHHHHHHHHHHHHHHhcccC
Confidence 45566677777543 7889999988888877776654 333344332 357899999999999999987544
No 11
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=91.37 E-value=0.85 Score=42.35 Aligned_cols=52 Identities=13% Similarity=0.291 Sum_probs=39.7
Q ss_pred CcEeehhHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHHHHHhhh
Q 019473 171 AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (340)
Q Consensus 171 ~~~Vf~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~~L~~ 233 (340)
++.|++|-.+|..+.-++|.+++.. ...+|+.| +..++ +.+=+++|++.++.
T Consensus 25 ~~~I~~GqylG~~~Lv~~Sl~~~~~----l~~ip~~w------iLGlL-GliPI~lGi~~l~~ 76 (191)
T PF03596_consen 25 RRQIVIGQYLGFTILVLASLLGAFG----LLFIPPEW------ILGLL-GLIPIYLGIKALFS 76 (191)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHH----HHhCCHHH------HHHHH-HHHHHHHHHHHHHc
Confidence 3459999999999988888887764 35788877 33556 44568999998885
No 12
>COG1971 Predicted membrane protein [Function unknown]
Probab=91.10 E-value=0.8 Score=42.70 Aligned_cols=24 Identities=13% Similarity=0.393 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHhhhcccCC
Q 019473 215 DDIAAVCLLVYFGVSTLLDAASTD 238 (340)
Q Consensus 215 ~~i~aa~LFl~FG~~~L~~a~~~~ 238 (340)
.++++.+++++.|+||++|+.+.|
T Consensus 69 ~~wigf~lL~~lG~~mI~e~f~~~ 92 (190)
T COG1971 69 AHWIGFVLLIILGLKMIIEGFKNE 92 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchh
Confidence 688999999999999999998753
No 13
>TIGR00948 2a75 L-lysine exporter.
Probab=89.19 E-value=4.2 Score=35.87 Aligned_cols=67 Identities=10% Similarity=0.035 Sum_probs=44.2
Q ss_pred HHHHHHhccCCcE-eehhHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHHHHHhhhcc
Q 019473 161 IAALLAARNSAAT-VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 235 (340)
Q Consensus 161 ati~LAar~~~~~-Vf~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~~L~~a~ 235 (340)
..+..++++++-. +.+|..+|.++...++++.-.. +-+..|.-. ...++++++-.+.+|..++++..
T Consensus 11 ~vi~~~~~~~~g~~~~~G~~~g~~i~~~~~~~Gl~~---ll~~~p~~~-----~~l~~~Ga~YLlylg~~~~r~~~ 78 (177)
T TIGR00948 11 FVLRQGIRREHVLLIVALCCICDLVLIAAGVFGVAA---LLAASPILL-----AVLTWGGALFLLWYGFLAAKTAW 78 (177)
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCHHHH-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555433 7788888888887777665544 233445443 25788888777889999998753
No 14
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=89.05 E-value=5.1 Score=36.68 Aligned_cols=148 Identities=18% Similarity=0.280 Sum_probs=79.4
Q ss_pred CchHHHHHHHHHh---ccCCcEeehhHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHHHHHh
Q 019473 155 GDKTFFIAALLAA---RNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTL 231 (340)
Q Consensus 155 GDKTQLati~LAa---r~~~~~Vf~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~~L 231 (340)
+|.-..++++..- ++++...+.|...|+++-.++-......+ +..| ..++++++..++-|+..+
T Consensus 12 ~DN~~vi~~~~~~lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll----~~~~---------~i~~igG~~Ll~~a~k~~ 78 (183)
T PF03741_consen 12 IDNAFVIAMIFRKLPPEQRRKALFWGIIGAIVLRIIFIFLASWLL----SIFP---------WILLIGGLFLLYIAIKLL 78 (183)
T ss_pred hhHHHHHHHHHhCCCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHH----HHHH---------HHHHHHHHHHHHHHHHHH
Confidence 4554444443322 23455689999999977766665555432 2222 356777766666777777
Q ss_pred hhcccCCCCCchhHHHHHHHhhhhccCCCccchhhHHHHHHHHHHHHHHH--hCChhHHHHHHHhcccCCceeehHHHHH
Q 019473 232 LDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAE--WGDKSFFSTIALAAASSPLGVIGGALAG 309 (340)
Q Consensus 232 ~~a~~~~~~~~eeE~~eae~~v~~~~~~~~g~~~~~~~f~~aF~l~FLAE--~GDKTQLaTiaLAA~~~p~~V~~Ga~lg 309 (340)
++..+ +++++...++. ++..+. ....++.+...+-++- +-=-+=+|.++++ .+++.++.|.+++
T Consensus 79 ~~~~~----~d~~~~~~~~~--~~~~~~------~~~~~~~~v~~I~~~DlvfSlDSV~a~~~it--~~~~iv~~g~i~s 144 (183)
T PF03741_consen 79 HEERD----EDPENAEVEEE--KKFFPV------SKSSLWLAVIQIELADLVFSLDSVLAAVGIT--DDFFIVITGNIIS 144 (183)
T ss_pred Hhccc----cccchhhhhhh--hccccc------hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHh--hhHHHHHHHHHHH
Confidence 76331 11111111110 011000 0123444443332221 1113556777766 6788899999988
Q ss_pred HHHHHHHHHHHHHHhhhccc
Q 019473 310 HVVATLLAVLGGSLLGTFLS 329 (340)
Q Consensus 310 ~~l~t~laVl~G~~l~~~is 329 (340)
..+--..+-++.+.+.++-.
T Consensus 145 i~~m~~~~~~~~~~l~~~p~ 164 (183)
T PF03741_consen 145 ILLMRFLSFLLAKLLERFPY 164 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88877777777777766533
No 15
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=88.73 E-value=5.7 Score=38.93 Aligned_cols=60 Identities=20% Similarity=0.191 Sum_probs=38.3
Q ss_pred CcEeehhHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHHHHHhhh
Q 019473 171 AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (340)
Q Consensus 171 ~~~Vf~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~~L~~ 233 (340)
+++||.|+.+|++++-++++++-..+..+.....+..-+ -+..++|+++....++||...
T Consensus 38 ~~~V~~G~~~gl~~s~~~a~~~~~~~~~~~~~~~~el~e---g~~~lvAv~~l~~m~~Wm~~~ 97 (283)
T TIGR00145 38 RGWVWVGVLAGFAACLAIGIGVIGAYGSLQKDEFKELLE---GIFGVIAVVMLSYMGLWMLRM 97 (283)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 456999999999999887777665421121111011101 135677788888999999954
No 16
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=88.09 E-value=3.5 Score=38.17 Aligned_cols=105 Identities=19% Similarity=0.184 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhcccCCCCCchhHHHHHHHhhhhccCCCccchhhHHHHHHHHHHHHHHHhCChhHHHHHHH
Q 019473 214 IDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIAL 293 (340)
Q Consensus 214 v~~i~aa~LFl~FG~~~L~~a~~~~~~~~eeE~~eae~~v~~~~~~~~g~~~~~~~f~~aF~l~FLAE~GDKTQLaTiaL 293 (340)
-.+++|+++.+..|+.|+....+.++ ..++|.+|.+. ..+. .. .++. +=.+ -|.-|=-+++.+
T Consensus 71 af~IaGGiiL~~ia~~ml~~~~~~~~-~~~~~~~~~~~-~~~~-----ai----~PLa----~Pll--aGPG~It~vi~~ 133 (203)
T PF01914_consen 71 AFRIAGGIILFLIALEMLFGSPSSEK-SSPDEKEEAKD-AEDI-----AI----VPLA----IPLL--AGPGTITTVIVL 133 (203)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcccc-cccchhhhhcc-cccc-----ee----cccc----hhhc--cChHHHHHHHHH
Confidence 36899999999999999986433211 11111111110 0010 00 0100 0011 255555556666
Q ss_pred hcccCC---ceeehHHHHHHHHHHHHHHHHHHHhhhcccHhHHhh
Q 019473 294 AAASSP---LGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYSN 335 (340)
Q Consensus 294 AA~~~p---~~V~~Ga~lg~~l~t~laVl~G~~l~~~is~r~i~~ 335 (340)
+++++. ..+.+++.+...+.+.+....++++.|++.+..++.
T Consensus 134 ~~~~~~~~~~~~~~~ai~~~~~~~~l~l~~a~~i~~~lG~~g~~v 178 (203)
T PF01914_consen 134 SAEAGSLQSLLIVLIAILLVALITYLILRFADKIMRRLGKTGLQV 178 (203)
T ss_pred HhccCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHH
Confidence 666543 345556666667777777778888888887766554
No 17
>COG0730 Predicted permeases [General function prediction only]
Probab=86.69 E-value=3.5 Score=38.44 Aligned_cols=152 Identities=20% Similarity=0.119 Sum_probs=75.4
Q ss_pred eehhHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHHHHHhhhcccCCCCCchhHHHHHHHhh
Q 019473 174 VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAV 253 (340)
Q Consensus 174 Vf~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~~L~~a~~~~~~~~eeE~~eae~~v 253 (340)
+-.-...-+.....+++.+|.. +...+|.++ .+.+-+.+.++.+++++++...... ++++++.......
T Consensus 71 v~~~~~~~l~~~~~~G~~lG~~---l~~~~~~~~-------l~~~~~~~ll~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 139 (258)
T COG0730 71 VDWKLALILLLGALIGAFLGAL---LALLLPAEL-------LKLLFGLLLLLLALYMLLGPRLAKA-EDRAARLRPLLFA 139 (258)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH---HHHhCCHHH-------HHHHHHHHHHHHHHHHHHhcccccc-cccccccCcchhH
Confidence 6667777777777888888865 567788876 3443455678888888887432000 1010000000000
Q ss_pred h-hccCCCccchhh----HHHHHHHHHHHHHHHhCChhHHHHHHHhc----c-----cCC-ceeehHHHH-HHHHHHHHH
Q 019473 254 S-EFSGNGAGIIAA----ASTIISTFTLVFVAEWGDKSFFSTIALAA----A-----SSP-LGVIGGALA-GHVVATLLA 317 (340)
Q Consensus 254 ~-~~~~~~~g~~~~----~~~f~~aF~l~FLAE~GDKTQLaTiaLAA----~-----~~p-~~V~~Ga~l-g~~l~t~la 317 (340)
. ..-+-..|..+. -..+...-.+..+....+|--.+|-.... . |-. .+..--... .+.+.+.++
T Consensus 140 ~~~~~g~~~G~~sG~~G~GgG~~~vp~l~~~~~~~~~~~~~ts~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~g~~~G 219 (258)
T COG0730 140 LALLIGFLAGFLSGLFGVGGGFGIVPALLLLLLLPLKLAVATSLAIILNTASNGAALYLFALGAVDWPLALLLAVGSILG 219 (258)
T ss_pred HHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHH
Confidence 0 000000010000 00122223333444444443333322111 0 100 111111222 788899999
Q ss_pred HHHHHHhhhcccHhHHhhc
Q 019473 318 VLGGSLLGTFLSEKVYSNF 336 (340)
Q Consensus 318 Vl~G~~l~~~is~r~i~~~ 336 (340)
.+.|.++.+++|++.++++
T Consensus 220 ~~lG~~l~~~~~~~~lr~~ 238 (258)
T COG0730 220 AYLGARLARRLSPKVLRRL 238 (258)
T ss_pred HHHHHHHHHhcCHHHHHHH
Confidence 9999999999999998864
No 18
>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake. Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane
Probab=84.42 E-value=12 Score=36.68 Aligned_cols=155 Identities=22% Similarity=0.174 Sum_probs=78.0
Q ss_pred CcEeehhHHHHHHHHHHHHHHHccccccccc---cCCccccCCCcchhHHHHHHHHHHHHHHHhhhcccCCCCCchhHHH
Q 019473 171 AATVFAGTFGALAAMTVISVILGRTFHYVDE---ILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQK 247 (340)
Q Consensus 171 ~~~Vf~Ga~lAl~l~t~LaV~~G~~~~~l~~---~Lp~r~~~~~~~v~~i~aa~LFl~FG~~~L~~a~~~~~~~~eeE~~ 247 (340)
+.+||.|+.+|.+.+-.+++.+-.....+.+ ...+...+ -....++.++-....+||...+.+..+ +-+++.+
T Consensus 35 ~~~V~~G~~~g~~~s~~~~~~~~~~~~~~~~~~~~~~~e~~e---g~~~liA~~li~~m~~wm~~~~~~~~~-~~~~~~~ 110 (306)
T PF03239_consen 35 RRWVWLGVAAGLVASLVIGAVFAVIFYTLSGDYWGISEELFE---GAISLIAVALITWMVFWMRRHGRKMKG-EWEDKLA 110 (306)
T ss_pred hheeeecHhHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhch-hHHHHHH
Confidence 3779999999999999998887765322221 00111100 023445555666777888764322221 1111111
Q ss_pred HHHHhhhh---ccCCCccchhhHHHHHHHHHHHHHHHhCChhHHHHHHHhcccC--CceeehHHHHHHHHHHHHHHHHHH
Q 019473 248 EAELAVSE---FSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAASS--PLGVIGGALAGHVVATLLAVLGGS 322 (340)
Q Consensus 248 eae~~v~~---~~~~~~g~~~~~~~f~~aF~l~FLAE~GDKTQLaTiaLAA~~~--p~~V~~Ga~lg~~l~t~laVl~G~ 322 (340)
..-...++ .+.+..+....+..+..+|+.+ +=| |=-|=+-..++.+... ...+..|+.+|.+++.+++++.-+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~afl~v-lRE-G~E~vLfl~a~~~~~~~~~~~~~~g~~~G~~~a~~~~~~~~~ 188 (306)
T PF03239_consen 111 KALSSGSEDARASQKDEGGGSKWALFLLAFLIV-LRE-GLEAVLFLAALAASLRKDAASILLGAILGIAAAVVLGWLLYR 188 (306)
T ss_pred HHHhhccchhhhhhhccccchhhHHHHHHHHHH-HHh-hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 0000011111233444444222 111 4445555555555433 567788888888888888888766
Q ss_pred HhhhcccHhH
Q 019473 323 LLGTFLSEKV 332 (340)
Q Consensus 323 ~l~~~is~r~ 332 (340)
.. .++|.+.
T Consensus 189 ~~-~~i~~~~ 197 (306)
T PF03239_consen 189 GL-IRISLRS 197 (306)
T ss_pred HH-HhcChHH
Confidence 54 4577654
No 19
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=82.20 E-value=8.7 Score=33.85 Aligned_cols=20 Identities=25% Similarity=0.152 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHHHhhh
Q 019473 214 IDDIAAVCLLVYFGVSTLLD 233 (340)
Q Consensus 214 v~~i~aa~LFl~FG~~~L~~ 233 (340)
++..+++++|++||++++++
T Consensus 171 ~i~~~~g~~li~~av~l~~~ 190 (191)
T PF01810_consen 171 WINRISGLLLIGFAVYLLYS 190 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 35777888999999999986
No 20
>COG1971 Predicted membrane protein [Function unknown]
Probab=82.18 E-value=3.5 Score=38.55 Aligned_cols=43 Identities=23% Similarity=0.392 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHHHHHhhhcc
Q 019473 182 LAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 235 (340)
Q Consensus 182 l~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~~L~~a~ 235 (340)
.++++.++..+|+. +++.+..+ ..++++++++++|++.|++.+
T Consensus 146 T~il~~~G~~IG~~---~g~~~g~~--------ae~lgGiiLI~~G~~iL~~~~ 188 (190)
T COG1971 146 TLILSALGAIIGRK---LGKFLGKY--------AEILGGIILIGIGVKILLEHL 188 (190)
T ss_pred HHHHHHHHHHHHHH---HHHHHhhH--------HHHHHHHHHHHHHHHHHHHhc
Confidence 34566666677754 55566544 578999999999999999743
No 21
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=81.05 E-value=5.3 Score=36.20 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=28.0
Q ss_pred ehHHHHHHHHHHHHHHHHHHHhhhcccHhHHhhc
Q 019473 303 IGGALAGHVVATLLAVLGGSLLGTFLSEKVYSNF 336 (340)
Q Consensus 303 ~~Ga~lg~~l~t~laVl~G~~l~~~is~r~i~~~ 336 (340)
.+...+.+...+.++.+.|+++.+++|+++++++
T Consensus 195 ~~~~~~~~~~~~~~G~~lG~~~~~~i~~~~~~~~ 228 (240)
T PF01925_consen 195 MLLLSLILLPGAFLGAFLGAKLARKIPQKVFRRI 228 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3444555788899999999999999999998864
No 22
>PRK10621 hypothetical protein; Provisional
Probab=80.71 E-value=28 Score=32.89 Aligned_cols=50 Identities=18% Similarity=0.081 Sum_probs=34.7
Q ss_pred eehhHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHHHHHhhh
Q 019473 174 VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (340)
Q Consensus 174 Vf~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~~L~~ 233 (340)
|=.-...-+.+..++++.+|.+ +...+|+++ .+.+-+++.++.++++++.
T Consensus 75 v~~~~~~~l~~~~l~Ga~~G~~---l~~~l~~~~-------l~~~~~~~ll~~~~~~l~~ 124 (266)
T PRK10621 75 VNLADQKLNIAMTFVGSMSGAL---LVQYVQADI-------LRQILPILVIGIGLYFLLM 124 (266)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH---HHHhCCHHH-------HHHHHHHHHHHHHHHHHHC
Confidence 5556666677788888888986 567888876 4444455566777777754
No 23
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=79.97 E-value=9.5 Score=33.60 Aligned_cols=65 Identities=14% Similarity=0.103 Sum_probs=41.8
Q ss_pred HHHHHHhccCCc--E-eehhHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHHHHHhhh
Q 019473 161 IAALLAARNSAA--T-VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (340)
Q Consensus 161 ati~LAar~~~~--~-Vf~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~~L~~ 233 (340)
.++.-++++++. . +.+|..+|..+...++++.-.. +-+..|.-. .+.++++++..+.+|+.++++
T Consensus 8 ~~~~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~Gl~~---l~~~~~~~~-----~~l~~~Ga~yLl~lg~~~~~~ 75 (185)
T TIGR00949 8 VVMQTSLSSGRRAGVLTILGIALGDAIWIVLSLLGLAV---LISKSVILF-----TVIKWLGGAYLIYLGIKMLRK 75 (185)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHc
Confidence 344455555532 2 7788899988887777764333 223445322 257888888778899988875
No 24
>PRK10995 inner membrane protein; Provisional
Probab=77.78 E-value=6 Score=36.99 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHhhhcc
Q 019473 215 DDIAAVCLLVYFGVSTLLDAA 235 (340)
Q Consensus 215 ~~i~aa~LFl~FG~~~L~~a~ 235 (340)
.+++|+++.+.+|+.|+++..
T Consensus 76 ~rIaGGilL~~igi~ml~~~~ 96 (221)
T PRK10995 76 LRIAGGLIVAFIGFRMLFPQQ 96 (221)
T ss_pred HHHHHHHHHHHHHHHHhcCCC
Confidence 688999999999999997643
No 25
>PRK11469 hypothetical protein; Provisional
Probab=77.09 E-value=8.2 Score=35.48 Aligned_cols=42 Identities=21% Similarity=0.379 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHHHHHhhhc
Q 019473 182 LAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 234 (340)
Q Consensus 182 l~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~~L~~a 234 (340)
.++++..++.+|+. +++++..+ ..++++++.++.|+++|++.
T Consensus 144 s~~~~~~G~~lG~~---~g~~~g~~--------a~~lgG~iLI~iGi~il~~h 185 (188)
T PRK11469 144 TLIMSTLGMMVGRF---IGSIIGKK--------AEILGGLVLIGIGVQILWTH 185 (188)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 34555566666664 33333322 57899999999999999874
No 26
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=76.85 E-value=32 Score=34.27 Aligned_cols=40 Identities=23% Similarity=0.410 Sum_probs=27.1
Q ss_pred CchHHHHHHHHHh-----ccCCcEeehhHHHHHHHHHHHHHHHccc
Q 019473 155 GDKTFFIAALLAA-----RNSAATVFAGTFGALAAMTVISVILGRT 195 (340)
Q Consensus 155 GDKTQLati~LAa-----r~~~~~Vf~Ga~lAl~l~t~LaV~~G~~ 195 (340)
+|+-+..++..+. ++++...+.|...|+++-.+. +.+|.+
T Consensus 77 vDN~fV~~~if~~f~vP~~~q~rvL~~Gi~gAlvlR~i~-i~~g~~ 121 (302)
T TIGR03718 77 VDNLFVFLLIFSYFAVPREYQHRVLFWGILGALVLRAIF-IALGAA 121 (302)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 7999888887765 333455788888887765554 444544
No 27
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=76.17 E-value=7.4 Score=36.79 Aligned_cols=125 Identities=19% Similarity=0.243 Sum_probs=65.3
Q ss_pred cCCcEeehhHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHHHHHhhhcccCCCCCchhHHHH
Q 019473 169 NSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKE 248 (340)
Q Consensus 169 ~~~~~Vf~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~~L~~a~~~~~~~~eeE~~e 248 (340)
+++...+.|...|+++--++....... + + +| + .++++++..+.-|..++.+ +++++++++
T Consensus 26 ~r~~al~~Gi~gAivlR~i~i~~~~~L---l-~-~~--~-------l~~iGG~~Ll~~~~k~l~~----~~~~~~~~~-- 85 (215)
T TIGR03716 26 QRKKALFYGLIGAYVFRFIALFLASFL---I-K-FW--W-------IKAIGALYLLYLAIKHFRK----KKKGKEDEE-- 85 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---H-H-HH--H-------HHHHHHHHHHHHHHHHHHh----ccccccccc--
Confidence 344558899999998877766555543 1 1 22 2 4666666566666666664 111111111
Q ss_pred HHHhhhhccCCCccchhhHHHHHHHHHHHHHHH--hCChhHHHHHHHhcccCCceeehHHHHHHHHHHHHHHHHHHHhhh
Q 019473 249 AELAVSEFSGNGAGIIAAASTIISTFTLVFVAE--WGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGT 326 (340)
Q Consensus 249 ae~~v~~~~~~~~g~~~~~~~f~~aF~l~FLAE--~GDKTQLaTiaLAA~~~p~~V~~Ga~lg~~l~t~laVl~G~~l~~ 326 (340)
.+ . +++ + ..++.+...+-++- +-=-+=+|.++++ .+++-++.|..++...--..+-+..+++.+
T Consensus 86 ~~----~-~~~--~-----~~f~~av~~I~~~DlvFSlDSV~A~~git--~~~~ii~~g~~~sIl~lr~~s~~l~~li~r 151 (215)
T TIGR03716 86 AE----K-KKA--H-----SGFWRTVLKVELMDIAFSVDSILAAVALS--GQFWVVFLGGIIGILIMRFAATIFVKLLER 151 (215)
T ss_pred cc----c-ccc--c-----chHHHHHHHHHHHHHHHHhhhHHHHHHhc--cChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 011 1 12343333322221 1123456666664 678888888887776666666666665544
Q ss_pred c
Q 019473 327 F 327 (340)
Q Consensus 327 ~ 327 (340)
+
T Consensus 152 ~ 152 (215)
T TIGR03716 152 F 152 (215)
T ss_pred H
Confidence 3
No 28
>PRK09304 arginine exporter protein; Provisional
Probab=72.57 E-value=30 Score=31.47 Aligned_cols=66 Identities=11% Similarity=0.113 Sum_probs=40.5
Q ss_pred HHHHHHhccCCcE-eehhHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHHHHHhhhc
Q 019473 161 IAALLAARNSAAT-VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 234 (340)
Q Consensus 161 ati~LAar~~~~~-Vf~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~~L~~a 234 (340)
..+.-+.+++... ...|..+|.++...++++.-.. +-...|.-. .+.++++++-.+.+|..++++.
T Consensus 25 ~v~~~~~~~~~~~~~~~Gi~~g~~~~~~la~~Gl~~---Ll~~~p~~~-----~~l~~~Ga~YLlyLg~~~~rs~ 91 (207)
T PRK09304 25 FVMNQGIRRQYHLMIALLCALSDLVLICAGIFGGSA---LLMQSPWLL-----ALVTWGGVAFLLWYGFGAFKTA 91 (207)
T ss_pred HHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455554332 6778888877777765554433 223344433 3578888876678999988864
No 29
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=68.54 E-value=19 Score=34.04 Aligned_cols=71 Identities=28% Similarity=0.345 Sum_probs=49.3
Q ss_pred HHHhcCchHH-----HHHHHHHhccCCcEeehhHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHH
Q 019473 150 FFSELGDKTF-----FIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLV 224 (340)
Q Consensus 150 FLAElGDKTQ-----Lati~LAar~~~~~Vf~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl 224 (340)
..-|+=|=.+ ++++++ ..+.+.++.|.+.+...+-..+-.+.++. ++.| ..+++++++..
T Consensus 100 ~~I~~~DlvFSlDSV~A~~gi--t~~~~ii~~g~~~sIl~lr~~s~~l~~li----~r~p---------~L~~~~~~iL~ 164 (215)
T TIGR03716 100 LKVELMDIAFSVDSILAAVAL--SGQFWVVFLGGIIGILIMRFAATIFVKLL----ERFP---------ELETAAFLLIG 164 (215)
T ss_pred HHHHHHHHHHHhhhHHHHHHh--ccChHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---------HHHHHHHHHHH
Confidence 3344555554 333333 34455599999999999999998887752 3444 36778888888
Q ss_pred HHHHHHhhhcc
Q 019473 225 YFGVSTLLDAA 235 (340)
Q Consensus 225 ~FG~~~L~~a~ 235 (340)
+.|+.++.++.
T Consensus 165 ~ig~kLil~~~ 175 (215)
T TIGR03716 165 WIGVKLLLETL 175 (215)
T ss_pred HHHHHHHHHHH
Confidence 99999999854
No 30
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=66.62 E-value=46 Score=30.32 Aligned_cols=135 Identities=20% Similarity=0.272 Sum_probs=73.5
Q ss_pred CchHHHHHHHHHhccC----CcEeehhHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHHHHH
Q 019473 155 GDKTFFIAALLAARNS----AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVST 230 (340)
Q Consensus 155 GDKTQLati~LAar~~----~~~Vf~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~~ 230 (340)
+|+-..+++ .+.+.+ +.....|...|+++.-+........+ + +| ..+++++++.++.|..+
T Consensus 14 ~DN~~vi~~-~t~~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll----~-~~---------~~~iaGGllLl~ia~~m 78 (176)
T TIGR03717 14 GDNAVVIAL-AARNLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLL----A-IP---------FLKLIGGLLLLWIGWKL 78 (176)
T ss_pred HHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-hH---------HHHHHHHHHHHHHHHHH
Confidence 677766666 233333 24478899999888877766655442 2 33 25788888888888888
Q ss_pred hhhcccCCCCCchhHHHHHHHhhhhccCCCccchhhHHHHHHHHHHHHHHHh--CChhHHHHHHHhcccCCceeehHHHH
Q 019473 231 LLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEW--GDKSFFSTIALAAASSPLGVIGGALA 308 (340)
Q Consensus 231 L~~a~~~~~~~~eeE~~eae~~v~~~~~~~~g~~~~~~~f~~aF~l~FLAE~--GDKTQLaTiaLAA~~~p~~V~~Ga~l 308 (340)
+.+. . ++++.+. . + .++++.+.+.+-++-. -=-+=+|.++.+ +.+++.++.|.++
T Consensus 79 l~~~----~---~~~~~~~-----~--~--------~~~~~~~v~~I~~~D~~fS~DsV~a~~~~~-~~~~~li~~g~~i 135 (176)
T TIGR03717 79 LLEE----E---EEQGGDV-----K--G--------STTLWAAIKTIVIADAVMSLDNVLAVAGAA-HGHLGLLIFGLLL 135 (176)
T ss_pred Hhcc----c---ccccccc-----c--c--------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHH
Confidence 8751 1 1111100 0 0 0123333333222211 112334444443 3466777777777
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 019473 309 GHVVATLLAVLGGSLLGTF 327 (340)
Q Consensus 309 g~~l~t~laVl~G~~l~~~ 327 (340)
+..+--..+-++.+++.++
T Consensus 136 ~i~~m~~~s~~~~~~~~~~ 154 (176)
T TIGR03717 136 SIPIIVWGSTLILKLMDRF 154 (176)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7766655555666666554
No 31
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=65.23 E-value=92 Score=28.06 Aligned_cols=70 Identities=14% Similarity=0.078 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhccCCcE---eehhHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHHHHHhhh
Q 019473 157 KTFFIAALLAARNSAAT---VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (340)
Q Consensus 157 KTQLati~LAar~~~~~---Vf~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~~L~~ 233 (340)
=..+..+.-++++++.. ..+|..+|..+...++++.-.. +-...|.-. .+.++++++-.+.+|+.+++.
T Consensus 22 P~~~~v~~~~~~~G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~---l~~~~p~~~-----~~lk~~Ga~YL~~lg~~~~~s 93 (205)
T PRK10520 22 SGAINTMSTSISHGYRGAVASIAGLQTGLAIHIVLVGVGLGA---LFSQSLLAF-----EVLKWAGAAYLIWLGIQQWRA 93 (205)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHH-----HHHHHHHHHHHHHHHHHHHhC
Confidence 34555566666666432 7779999999887777655443 223345433 357889888778899999986
Q ss_pred c
Q 019473 234 A 234 (340)
Q Consensus 234 a 234 (340)
.
T Consensus 94 ~ 94 (205)
T PRK10520 94 A 94 (205)
T ss_pred C
Confidence 3
No 32
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=63.33 E-value=50 Score=30.07 Aligned_cols=50 Identities=12% Similarity=0.140 Sum_probs=37.7
Q ss_pred CcEeehhHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHHHHHhhh
Q 019473 171 AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (340)
Q Consensus 171 ~~~Vf~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~~L~~ 233 (340)
.+.++.|.+++..++-..|-++.++. ++.| ..+++++.+..+.|+.++++
T Consensus 126 ~~li~~g~~i~i~~m~~~s~~~~~~~----~~~p---------~l~~~~~~~L~~ig~kl~~~ 175 (176)
T TIGR03717 126 LGLLIFGLLLSIPIIVWGSTLILKLM----DRFP---------WIIYIGAALLGYVAGEMIVT 175 (176)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---------HHHHHHHHHHHHHHHHHhcC
Confidence 34489999999999988888877752 3444 36778787778889988874
No 33
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=63.29 E-value=1.2e+02 Score=27.79 Aligned_cols=71 Identities=13% Similarity=0.145 Sum_probs=46.7
Q ss_pred cCchHHHHHHHHHhccCCcE---eehhHHHHHHHHHHHHHHH-ccccccccccCCccccCCCcchhHHHHHHHHHHHHHH
Q 019473 154 LGDKTFFIAALLAARNSAAT---VFAGTFGALAAMTVISVIL-GRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVS 229 (340)
Q Consensus 154 lGDKTQLati~LAar~~~~~---Vf~Ga~lAl~l~t~LaV~~-G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~ 229 (340)
-|. ..+.++.-++++++.. +.+|..+|.++...++++. +..+ ...|.-+ .+.++++++-.+.+|+.
T Consensus 20 PGP-~~~~v~~~~~~~G~~~g~~~~~G~~~G~~v~~~l~~~Gl~all----~~~~~~f-----~~lk~~GaaYL~ylg~~ 89 (208)
T COG1280 20 PGP-DNLLVLARSLSRGRRAGLATALGIALGDLVHMLLAALGLAALL----ATSPALF-----TVLKLAGAAYLLYLGWK 89 (208)
T ss_pred CCc-cHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHH-----HHHHHHHHHHHHHHHHH
Confidence 444 3455566677776533 7889888888877776663 3321 2223332 25789999888899999
Q ss_pred Hhhhc
Q 019473 230 TLLDA 234 (340)
Q Consensus 230 ~L~~a 234 (340)
+++..
T Consensus 90 ~~ra~ 94 (208)
T COG1280 90 ALRAG 94 (208)
T ss_pred HHhcc
Confidence 99875
No 34
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=62.09 E-value=63 Score=30.60 Aligned_cols=69 Identities=17% Similarity=0.340 Sum_probs=42.7
Q ss_pred chHHHHHHHHHhccC---CcEeehhHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHHHHHhh
Q 019473 156 DKTFFIAALLAARNS---AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLL 232 (340)
Q Consensus 156 DKTQLati~LAar~~---~~~Vf~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~~L~ 232 (340)
|--=+..+..|.+-. .+.+++|=.+|.+..-+.|..+.- +.+.+|+.+ +..+. +.+=++.|+|.++
T Consensus 18 D~lIiL~l~Far~~~~k~~~~I~~GQyLGs~~lilaSL~~a~----v~~fvp~e~------I~glL-GLIPi~LGik~l~ 86 (205)
T COG4300 18 DLLIILLLFFARRKSRKDILHIYLGQYLGSVILILASLLFAF----VLNFVPEEW------ILGLL-GLIPIYLGIKVLI 86 (205)
T ss_pred HHHHHHHHHHHHhcccCcEEEEeHHHHHhHHHHHHHHHHHHH----HHhhCcHHH------HHHHH-hHHHHHHhhHHhh
Confidence 444445555555432 233999988887766555554332 456789887 33344 4456889999998
Q ss_pred hcc
Q 019473 233 DAA 235 (340)
Q Consensus 233 ~a~ 235 (340)
.+.
T Consensus 87 ~~d 89 (205)
T COG4300 87 LGD 89 (205)
T ss_pred ccc
Confidence 743
No 35
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=61.20 E-value=47 Score=30.40 Aligned_cols=76 Identities=25% Similarity=0.386 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhcCchHH-----HHHHHHHhccCCcEeehhHHHHHHHHHHHHHHHccccccccccCCccccCCCcch
Q 019473 140 RGFASAFLLIFFSELGDKTF-----FIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPI 214 (340)
Q Consensus 140 ~~f~~aF~liFLAElGDKTQ-----Lati~LAar~~~~~Vf~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v 214 (340)
..++.+...| |+=|=.+ ++++.++ .+.+.++.|.+.+...+-..+-.+.++. ++.| .
T Consensus 103 ~~~~~~v~~I---~~~DlvfSlDSV~a~~~it--~~~~iv~~g~i~si~~m~~~~~~~~~~l----~~~p---------~ 164 (183)
T PF03741_consen 103 SSLWLAVIQI---ELADLVFSLDSVLAAVGIT--DDFFIVITGNIISILLMRFLSFLLAKLL----ERFP---------Y 164 (183)
T ss_pred HHHHHHHHHH---HHHHHHHHHhHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---------H
Confidence 3454444443 4445444 4455555 3445599999999999999999988862 3444 3
Q ss_pred hHHHHHHHHHHHHHHHhhh
Q 019473 215 DDIAAVCLLVYFGVSTLLD 233 (340)
Q Consensus 215 ~~i~aa~LFl~FG~~~L~~ 233 (340)
.+++++++..+.|+.++.|
T Consensus 165 l~~~~~~~L~~ig~~li~~ 183 (183)
T PF03741_consen 165 LKYLAAAILGFIGVKLILE 183 (183)
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 6778887778888888763
No 36
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=59.60 E-value=86 Score=30.46 Aligned_cols=162 Identities=20% Similarity=0.198 Sum_probs=81.3
Q ss_pred HHHHHHHHHhc---CchHHHHHHHHH---hccCCcEeehhHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHH
Q 019473 144 SAFLLIFFSEL---GDKTFFIAALLA---ARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDI 217 (340)
Q Consensus 144 ~aF~liFLAEl---GDKTQLati~LA---ar~~~~~Vf~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i 217 (340)
.++....+-|. +|+-.+++++-. -++++...+.|...|++.-.++-.. |.+ +-+ ++.. .-+
T Consensus 18 ~~l~tl~~lE~vL~iDN~iviai~~~~Lp~~qr~ral~~Gl~~A~v~R~~ll~~-~s~---Ll~-l~~~--------l~~ 84 (254)
T COG0861 18 VALLTLILLEIVLGIDNAIVIAILASKLPPKQRKKALFIGLAGALVLRIILLAS-ISW---LLT-LTQP--------LLY 84 (254)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHH-hhHH--------HHH
Confidence 45555555664 788877765422 2233455888998888876665444 433 211 1111 112
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCchhHHHHHH----HhhhhccCCCccchhhHHHHHHHHHHHHHHH--hCChhHHHHH
Q 019473 218 AAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAE----LAVSEFSGNGAGIIAAASTIISTFTLVFVAE--WGDKSFFSTI 291 (340)
Q Consensus 218 ~aa~LFl~FG~~~L~~a~~~~~~~~eeE~~eae----~~v~~~~~~~~g~~~~~~~f~~aF~l~FLAE--~GDKTQLaTi 291 (340)
+.+..++.-++.+++++.. ++.....| .+.++...+ +......+|+.+...+-++- +.=-|-+|.+
T Consensus 85 ~fg~~L~~~~~~ll~~~~~------~~~k~~~~~~~~~~~~~~~~~--~~~~~~~~f~~ai~~I~i~D~vFSlDSV~Aa~ 156 (254)
T COG0861 85 IFGLYLLWRDIKLLLGGLF------LLFKATKELHERLEGEEFFVN--GKLKKATPFWGAIIQIELADLVFSLDSVIAAV 156 (254)
T ss_pred HHHHHHHHHHHHHHhcchh------HHHHHHHHHhhhhcccccccc--ccccccCcHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 2244455556666664221 11111011 010110000 00001234555555554443 2335677777
Q ss_pred HHhcccCCceeehHHHHHHHHHHHHHHHHHHHhhhcc
Q 019473 292 ALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFL 328 (340)
Q Consensus 292 aLAA~~~p~~V~~Ga~lg~~l~t~laVl~G~~l~~~i 328 (340)
+++ .+|+-+++|.+++..+-=..+=.+.+++-|+-
T Consensus 157 g~~--~~~~im~~a~i~aI~~m~~aa~~l~~ll~r~p 191 (254)
T COG0861 157 GMA--GHPFVMVTAVIFAILVMRFAAFLLARLLERHP 191 (254)
T ss_pred HHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHch
Confidence 776 67788888888887766666666666665543
No 37
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=58.20 E-value=45 Score=32.85 Aligned_cols=49 Identities=14% Similarity=0.026 Sum_probs=30.2
Q ss_pred HHHHHHHHhCChhHHHHHHHhcccCCceeehHHHHHHHHHHHHHHHHHHHhhhccc
Q 019473 274 FTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLS 329 (340)
Q Consensus 274 F~l~FLAE~GDKTQLaTiaLAA~~~p~~V~~Ga~lg~~l~t~laVl~G~~l~~~is 329 (340)
++++|..-+|+-..-....++ .-+|.++.+....+++++..+...++.+
T Consensus 197 ~VLL~a~~lg~~~~Gi~~vla-------fslGtaltm~~vgll~~~~~r~~~~~~~ 245 (279)
T PRK10019 197 TVLLICIQLKALTLGATLVLS-------FSIGLALTLVTVGVGAAISVQQAAKRWS 245 (279)
T ss_pred HHHHHHHHhchHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555556654443333332 2468888888888888777776666653
No 38
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=57.89 E-value=24 Score=33.04 Aligned_cols=55 Identities=13% Similarity=0.410 Sum_probs=39.3
Q ss_pred ccCCcEeehhHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHHHHHhhh
Q 019473 168 RNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (340)
Q Consensus 168 r~~~~~Vf~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~~L~~ 233 (340)
+++++.|.+|-.+|..+--++|+..+.. ...+|+.| +..+++ .+=++.|+|.+++
T Consensus 21 ~~~~~~IviGqylGf~~Lv~~Sl~~a~g----l~~iP~~w------IlGlLG-liPI~lGi~~l~~ 75 (193)
T TIGR00779 21 RKEYKDIYIGQYLGSIILILVSLLLAFG----VNLIPEKW------VLGLLG-LIPIYLGIKVAIK 75 (193)
T ss_pred CCCeeEEEEeHHHHHHHHHHHHHHHHHH----HHhCCHHH------HHhHHh-HHHHHHHHHHHhc
Confidence 4556669999999998877777775442 24689887 225553 3458999998886
No 39
>PRK10958 leucine export protein LeuE; Provisional
Probab=57.35 E-value=1.2e+02 Score=27.76 Aligned_cols=73 Identities=21% Similarity=0.259 Sum_probs=44.6
Q ss_pred cCchHHHHHHHHHhccCCcE---eehhHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHHHHH
Q 019473 154 LGDKTFFIAALLAARNSAAT---VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVST 230 (340)
Q Consensus 154 lGDKTQLati~LAar~~~~~---Vf~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~~ 230 (340)
-|.-. +..+.-+.++++.. ..+|..+|..+...+++..-.. +-+..|.-. .+.++++++-.+.+|+.+
T Consensus 24 PGP~~-~~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~G~~~---l~~~~p~~~-----~~l~~~G~~yL~~la~~~ 94 (212)
T PRK10958 24 PGPNS-LYVLSTAARRGVKAGYRAACGVFIGDAVLMFLAAAGVAS---LLKATPLLF-----NVVKYLGAAYLLYLGVKM 94 (212)
T ss_pred CchHH-HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 34433 33445555665432 6778888888877666653332 223344433 357888888778899999
Q ss_pred hhhcc
Q 019473 231 LLDAA 235 (340)
Q Consensus 231 L~~a~ 235 (340)
++++.
T Consensus 95 ~~~~~ 99 (212)
T PRK10958 95 LRAAL 99 (212)
T ss_pred HHhhc
Confidence 98753
No 40
>PRK10229 threonine efflux system; Provisional
Probab=57.25 E-value=39 Score=30.44 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=48.9
Q ss_pred hcCchHHHHHHHHHhccCCcE---eehhHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHHHH
Q 019473 153 ELGDKTFFIAALLAARNSAAT---VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVS 229 (340)
Q Consensus 153 ElGDKTQLati~LAar~~~~~---Vf~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~ 229 (340)
--|. ..+.++.-+.++++.. ..+|...|.++...++++.-.. +-...|.-. .+.++++++-.+.+|..
T Consensus 18 sPGP-~~~~vi~~~~~~G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~---ll~~~p~~~-----~~l~~~Ga~yLlylg~~ 88 (206)
T PRK10229 18 SPGP-DFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGVALLGLHL---ILEKMAWLH-----TIIMVGGGLYLCWMGYQ 88 (206)
T ss_pred CCCc-hhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHH-----HHHHHHHHHHHHHHHHH
Confidence 3455 6677777888887543 6778888888877776665543 233344332 25788888766788988
Q ss_pred Hhhhc
Q 019473 230 TLLDA 234 (340)
Q Consensus 230 ~L~~a 234 (340)
++++.
T Consensus 89 ~~~~~ 93 (206)
T PRK10229 89 MLRGA 93 (206)
T ss_pred HHHhc
Confidence 88764
No 41
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=54.63 E-value=14 Score=34.38 Aligned_cols=20 Identities=25% Similarity=0.137 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHhhh
Q 019473 214 IDDIAAVCLLVYFGVSTLLD 233 (340)
Q Consensus 214 v~~i~aa~LFl~FG~~~L~~ 233 (340)
-.+++|+++.+..|+.|+..
T Consensus 74 afrIaGGiiL~~ia~~ml~~ 93 (201)
T TIGR00427 74 AFRIAGGILLFTIAMDMLSG 93 (201)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 36889999999999999965
No 42
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=47.97 E-value=24 Score=32.77 Aligned_cols=25 Identities=8% Similarity=0.135 Sum_probs=19.7
Q ss_pred ccCCcccchhHHHHHHHHHHHHhcCC
Q 019473 88 SVHNLANDSGLIKFVMFFGLLTLQGS 113 (340)
Q Consensus 88 ~~~~~~~~~~~~~lFl~FGl~tLr~a 113 (340)
.++.++|+.+. .++++.|+|+++++
T Consensus 58 i~~~~~~~ig~-~iLi~iG~~mi~~~ 82 (206)
T TIGR02840 58 LPPKVTEILGA-FILIAIGIWIIYNA 82 (206)
T ss_pred hchhhHHHHHH-HHHHHHHHHHHHHH
Confidence 34557888885 78888999999876
No 43
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=45.99 E-value=1e+02 Score=30.56 Aligned_cols=102 Identities=12% Similarity=0.154 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCchhHHHHHHHhhhhccCCCccchhhHHHHHHHHHHHHHHHhCChhHHHHHHHhc
Q 019473 216 DIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAA 295 (340)
Q Consensus 216 ~i~aa~LFl~FG~~~L~~a~~~~~~~~eeE~~eae~~v~~~~~~~~g~~~~~~~f~~aF~l~FLAE~GDKTQLaTiaLAA 295 (340)
+.+.+.-++++|+.++.++.+.- ++++...+- ...... .++..++..++++.+.-----+=..+++|++
T Consensus 131 ~~l~G~gllf~gl~~m~~~~~pl--~~~~~~~~~---~~~l~~------~~~~~~l~G~~lT~ivQSSsA~i~i~~~la~ 199 (307)
T TIGR00704 131 RSGIGLGLIFLALELISQLVTPL--TQANGVQVI---FASLTG------SILLDLLIGAVLTIISHSSSAAVLITATLTA 199 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hcChhHHHH---HHHhcc------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567788888777654311 111111100 001111 1233444555555554322222223344555
Q ss_pred cc-----CCceeehHHHHHHHHHHHHHHHHHHHhhhcc
Q 019473 296 AS-----SPLGVIGGALAGHVVATLLAVLGGSLLGTFL 328 (340)
Q Consensus 296 ~~-----~p~~V~~Ga~lg~~l~t~laVl~G~~l~~~i 328 (340)
+. ...++.+|+-+|-.+...++-+.++.-+||+
T Consensus 200 ~G~i~~~~a~~lvlGaNiGT~~ta~las~g~~~~arr~ 237 (307)
T TIGR00704 200 AGIIGFPVALCLVLGSNLGSGILAMLAASAANAAARRV 237 (307)
T ss_pred CCCCCHHHHHHHHHhcchhHHHHHHHHHccCchhHHHH
Confidence 42 1356677877777777777776666555554
No 44
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=45.31 E-value=49 Score=29.57 Aligned_cols=19 Identities=16% Similarity=-0.153 Sum_probs=11.6
Q ss_pred cCCceeehHHHHHHHHHHH
Q 019473 297 SSPLGVIGGALAGHVVATL 315 (340)
Q Consensus 297 ~~p~~V~~Ga~lg~~l~t~ 315 (340)
...|.+.+|..+..+.+.+
T Consensus 107 ~g~Wl~~iG~~~~i~~~~G 125 (137)
T PF12270_consen 107 FGWWLILIGAVLLIVAVVG 125 (137)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3347788887765554443
No 45
>COG4280 Predicted membrane protein [Function unknown]
Probab=43.26 E-value=34 Score=32.81 Aligned_cols=51 Identities=20% Similarity=0.119 Sum_probs=40.7
Q ss_pred hhHHHHHHHhcc--cCCceeehHHHHHHHHHHHHHHHHHHHhhhcccHhHHhhc
Q 019473 285 KSFFSTIALAAA--SSPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYSNF 336 (340)
Q Consensus 285 KTQLaTiaLAA~--~~p~~V~~Ga~lg~~l~t~laVl~G~~l~~~is~r~i~~~ 336 (340)
-+-.-+|+.+-. +++-.-++|+.+|+++.-.++..+|+.+ ..+|.++++++
T Consensus 17 lvEa~aIa~avg~~~~wr~al~ga~lglalvl~l~lvlGk~L-~lvPln~lqiv 69 (236)
T COG4280 17 LVEAGAIAAAVGNIYKWRLALIGAVLGLALVLILTLVLGKLL-YLVPLNYLQIV 69 (236)
T ss_pred HHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHccce-eeeechHHHHH
Confidence 455667877775 3566678999999999999999999988 56888887764
No 46
>PRK11111 hypothetical protein; Provisional
Probab=43.23 E-value=56 Score=30.71 Aligned_cols=135 Identities=17% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHHHHHhhhcccCCCCCchhHHHHHHHhhhhcc
Q 019473 178 TFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFS 257 (340)
Q Consensus 178 a~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~~L~~a~~~~~~~~eeE~~eae~~v~~~~ 257 (340)
+.+.-.+.-.+..++|++ +-+.+--.. +-.+++|+++.+..|+.|+....+....+.+|+++.++.+
T Consensus 49 a~l~a~~ill~f~~~G~~---iL~~fGIsl-----~afrIaGGiiL~~ial~Ml~g~~~~~~~~~~~~~~~~~~~----- 115 (214)
T PRK11111 49 ANLSVAIILLISLFLGDF---ILNLFGISI-----DSFRIAGGILVVTIAMSMISGKLGEDKQNKQEKSETAVRE----- 115 (214)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHhCCCH-----HHHHHHHHHHHHHHHHHHhCCCCCcccccccccccccccc-----
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHhCChhHHHHHHHhcccCCceeehHHHHHHHHH---HHHHHHHHHHhhhcccHhHHh
Q 019473 258 GNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVA---TLLAVLGGSLLGTFLSEKVYS 334 (340)
Q Consensus 258 ~~~~g~~~~~~~f~~aF~l~FLAE~GDKTQLaTiaLAA~~~p~~V~~Ga~lg~~l~---t~laVl~G~~l~~~is~r~i~ 334 (340)
...+.=..+=.++ |.-|=-++|.++++++.+.-.++..++.+++ +.+....+.++.|++.+.-++
T Consensus 116 ----------~iaivPLa~Plla--GPGaIttvI~l~~~~~~~~~~~~~~~ai~~~~~~~~l~l~~s~~i~r~LG~~G~~ 183 (214)
T PRK11111 116 ----------SIGVVPLALPLMA--GPGAISSTIVWGTRYHSWSNLLGFSVAIALFALCCWLLFRMAPWLVRLLGQTGIN 183 (214)
T ss_pred ----------ceeeecccccccc--CcHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q ss_pred hcc
Q 019473 335 NFN 337 (340)
Q Consensus 335 ~~~ 337 (340)
.++
T Consensus 184 vi~ 186 (214)
T PRK11111 184 VIT 186 (214)
T ss_pred HHH
No 47
>KOG1397 consensus Ca2+/H+ antiporter VCX1 and related proteins [Inorganic ion transport and metabolism]
Probab=40.33 E-value=81 Score=33.04 Aligned_cols=20 Identities=25% Similarity=0.389 Sum_probs=11.7
Q ss_pred cCchHHHHHHHHHhccCCcE
Q 019473 154 LGDKTFFIAALLAARNSAAT 173 (340)
Q Consensus 154 lGDKTQLati~LAar~~~~~ 173 (340)
+|.-|-++...+|-|.++..
T Consensus 136 fGnaiElii~ilALk~g~~r 155 (441)
T KOG1397|consen 136 FGNAIELIIYILALKNGKVR 155 (441)
T ss_pred hccHHHHHHHHHHhhcCceE
Confidence 45556666666666665544
No 48
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=39.28 E-value=87 Score=29.41 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHhhhccc
Q 019473 215 DDIAAVCLLVYFGVSTLLDAAS 236 (340)
Q Consensus 215 ~~i~aa~LFl~FG~~~L~~a~~ 236 (340)
.+++++++.+..|+.|+....+
T Consensus 75 ~rIAGGilLf~ia~~ml~~~~~ 96 (203)
T COG2095 75 FRIAGGILLFLIALRMLFGPTS 96 (203)
T ss_pred HHHhhhHHHHHHHHHHhcCCcC
Confidence 5789999999999999987443
No 49
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=38.49 E-value=3e+02 Score=24.81 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=45.7
Q ss_pred chHHHHHHHHHhccCCc---EeehhHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHHHHHhh
Q 019473 156 DKTFFIAALLAARNSAA---TVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLL 232 (340)
Q Consensus 156 DKTQLati~LAar~~~~---~Vf~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~~L~ 232 (340)
.=+.+..+.-++++++. ...+|...|..+...+++..... +.+..|.-. .+.++++++-.+..|..+++
T Consensus 21 GP~~~~v~~~~~~~G~r~a~~~~~G~~~g~~~~~~~~~~g~~~---l~~~~p~~~-----~vlk~~Ga~YLlyLg~~~~~ 92 (195)
T PRK10323 21 GPNNILALSSATSHGFRQSTRVLAGMSLGFLIVMLLCAGISFS---LAVIDPAAV-----HLLSWAGAAYIVWLAWKIAT 92 (195)
T ss_pred ChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHh
Confidence 34455666666676643 27889999999986666644322 333445433 35788887766779999887
Q ss_pred h
Q 019473 233 D 233 (340)
Q Consensus 233 ~ 233 (340)
.
T Consensus 93 s 93 (195)
T PRK10323 93 S 93 (195)
T ss_pred c
Confidence 6
No 50
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=33.58 E-value=1.5e+02 Score=27.48 Aligned_cols=74 Identities=16% Similarity=0.126 Sum_probs=37.5
Q ss_pred CchHHHHHHHHHhccCCcE---eehhHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHHHHHh
Q 019473 155 GDKTFFIAALLAARNSAAT---VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTL 231 (340)
Q Consensus 155 GDKTQLati~LAar~~~~~---Vf~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~~L 231 (340)
|.-|-=+.+.++++++.+. +.+++.+...+.+.+.-..+.. +.+++-+ ....+...+.+.+....|+.++
T Consensus 123 GPG~It~vi~~~~~~~~~~~~~~~~~ai~~~~~~~~l~l~~a~~---i~~~lG~----~g~~vi~Ri~Glil~aiavq~i 195 (203)
T PF01914_consen 123 GPGTITTVIVLSAEAGSLQSLLIVLIAILLVALITYLILRFADK---IMRRLGK----TGLQVITRIMGLILAAIAVQMI 195 (203)
T ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHhhh----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555422 2333333333333333333332 3333332 2334556666777888999998
Q ss_pred hhcc
Q 019473 232 LDAA 235 (340)
Q Consensus 232 ~~a~ 235 (340)
.++.
T Consensus 196 ~~Gl 199 (203)
T PF01914_consen 196 LSGL 199 (203)
T ss_pred HHHH
Confidence 8764
No 51
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.18 E-value=56 Score=26.29 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccHhHHh
Q 019473 307 LAGHVVATLLAVLGGSLLGTFLSEKVYS 334 (340)
Q Consensus 307 ~lg~~l~t~laVl~G~~l~~~is~r~i~ 334 (340)
.+..++|-+.++++|-+++++.-++.++
T Consensus 7 il~ivl~ll~G~~~G~fiark~~~k~lk 34 (71)
T COG3763 7 ILLIVLALLAGLIGGFFIARKQMKKQLK 34 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3788888899999999999987777654
No 52
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=31.54 E-value=6e+02 Score=27.14 Aligned_cols=60 Identities=20% Similarity=0.176 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHh-CChhHHHHHHHhcccCCceeehH----HHHHHHHHHHHHHHHHHHhhh
Q 019473 267 ASTIISTFTLVFVAEW-GDKSFFSTIALAAASSPLGVIGG----ALAGHVVATLLAVLGGSLLGT 326 (340)
Q Consensus 267 ~~~f~~aF~l~FLAE~-GDKTQLaTiaLAA~~~p~~V~~G----a~lg~~l~t~laVl~G~~l~~ 326 (340)
+.-++..|+..|.++- ++-.|..++.+-.-.+-..|+-+ ++.|.+.+.....+..-.+.+
T Consensus 265 ~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~ 329 (488)
T KOG2325|consen 265 LVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGK 329 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456677788888887 99999999998775433333333 334444444444443334433
No 53
>PRK10599 calcium/sodium:proton antiporter; Provisional
Probab=30.39 E-value=4.6e+02 Score=26.98 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=21.1
Q ss_pred CceeehHHHHHHHHHHHHHHHH-HHHhhh
Q 019473 299 PLGVIGGALAGHVVATLLAVLG-GSLLGT 326 (340)
Q Consensus 299 p~~V~~Ga~lg~~l~t~laVl~-G~~l~~ 326 (340)
...+.+|+.++.+.-+.+++.+ |-++.+
T Consensus 287 slnialGSsLq~illtvP~lvlig~~~g~ 315 (366)
T PRK10599 287 AMNLFFGSVLATISLTVPVVTLIAFLTGN 315 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4778899999999999888776 444443
No 54
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=30.34 E-value=2.8e+02 Score=29.99 Aligned_cols=94 Identities=19% Similarity=0.305 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhcccCCCCCchhHHHHHHHhhhhccCCCccchhhHHHHHHHHHHHHHHHhCChhHHHHHHH
Q 019473 214 IDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIAL 293 (340)
Q Consensus 214 v~~i~aa~LFl~FG~~~L~~a~~~~~~~~eeE~~eae~~v~~~~~~~~g~~~~~~~f~~aF~l~FLAE~GDKTQLaTiaL 293 (340)
+.++++++..++||+.++.++...- -.+.-..-+ .+... .++..++..++++-+----+-|-+.|+++
T Consensus 7 ~l~l~g~v~l~L~g~~~m~~Gv~~~----~G~~lr~~L--~~~t~------np~~gvl~Gi~~T~llQSStatt~lt~gf 74 (533)
T COG1283 7 LLNLLGAVALLLFGIKMVGDGVQRA----AGDRLRKIL--ARFTS------NPILGVLAGIVATALLQSSTATTVLTIGF 74 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHH--HHhcC------CcHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 4688899999999999999876421 111111111 11111 24567788888888888888899999999
Q ss_pred hccc-----CCceeehHHHHHHHHHHHHHHH
Q 019473 294 AAAS-----SPLGVIGGALAGHVVATLLAVL 319 (340)
Q Consensus 294 AA~~-----~p~~V~~Ga~lg~~l~t~laVl 319 (340)
.++. ...+|++|+=+|-.+.+-+..+
T Consensus 75 V~aGl~sl~~Ai~vilGANIGTt~Ta~iva~ 105 (533)
T COG1283 75 VAAGLLSLKQAIGVILGANIGTTVTAWIVAL 105 (533)
T ss_pred HhccccchhhhhhheeccchhHHHHHHHHHH
Confidence 8863 2578899988887766655444
No 55
>PRK09304 arginine exporter protein; Provisional
Probab=29.88 E-value=3.6e+02 Score=24.45 Aligned_cols=23 Identities=9% Similarity=0.274 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhccc
Q 019473 214 IDDIAAVCLLVYFGVSTLLDAAS 236 (340)
Q Consensus 214 v~~i~aa~LFl~FG~~~L~~a~~ 236 (340)
+...+.+++++.+|++++.++..
T Consensus 182 ~in~~~g~~l~~~~~~l~~~~~~ 204 (207)
T PRK09304 182 IINLFVGCVMWFIALQLARQGIA 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 35677788899999999988653
No 56
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=29.20 E-value=4.8e+02 Score=27.00 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=11.2
Q ss_pred eehhHHHHHHHHHHHHHHHccc
Q 019473 174 VFAGTFGALAAMTVISVILGRT 195 (340)
Q Consensus 174 Vf~Ga~lAl~l~t~LaV~~G~~ 195 (340)
|+.|.++|+++-.=++.++|++
T Consensus 142 v~~G~tlA~v~GvPLGt~ig~~ 163 (394)
T COG2814 142 VFTGLTLATVLGVPLGTFLGQL 163 (394)
T ss_pred HHHHHHHHHHHhccHHHHHHHH
Confidence 5555555555544444444443
No 57
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=28.04 E-value=1.2e+02 Score=28.08 Aligned_cols=46 Identities=24% Similarity=0.145 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHHHHHhhh
Q 019473 176 AGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (340)
Q Consensus 176 ~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~~L~~ 233 (340)
.=++.++++.+++++....+ ..+++|. .++++.++-++||..+++-
T Consensus 23 ~~AT~~~~vat~~~~~~~~~---~~~~v~~---------m~~is~~lv~vFGglTl~~ 68 (178)
T TIGR00997 23 FAATIALLVATIIAIGLSYV---KYKKVEK---------MQWISFVLIVVFGGLTLIF 68 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HhCCccH---------HHHHHHHHHHHHHHHHHHh
Confidence 34556777788888887775 4556653 5777888889999988874
No 58
>PRK10739 putative antibiotic transporter; Provisional
Probab=27.36 E-value=1.6e+02 Score=27.32 Aligned_cols=20 Identities=10% Similarity=0.223 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHHhhh
Q 019473 214 IDDIAAVCLLVYFGVSTLLD 233 (340)
Q Consensus 214 v~~i~aa~LFl~FG~~~L~~ 233 (340)
-.+++++++.+..|+.|+.+
T Consensus 71 afrIAGGilL~~ial~ml~~ 90 (197)
T PRK10739 71 TVSISGGIILFLIAIKMIFP 90 (197)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 36889999999999999965
No 59
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.02 E-value=2.9e+02 Score=24.42 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=13.9
Q ss_pred HhcCchHHHHHHHHHhc
Q 019473 152 SELGDKTFFIAALLAAR 168 (340)
Q Consensus 152 AElGDKTQLati~LAar 168 (340)
|||.||-||.-++.=.|
T Consensus 33 a~W~DKdellDViyW~r 49 (129)
T KOG3415|consen 33 AEWPDKDELLDVIYWIR 49 (129)
T ss_pred ccCCCHHHHHHHHHHHH
Confidence 79999999998876444
No 60
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.96 E-value=3.3e+02 Score=29.91 Aligned_cols=126 Identities=21% Similarity=0.259 Sum_probs=66.9
Q ss_pred eehhHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHHHHHhhhccc----CCCCCchhHHHHH
Q 019473 174 VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAS----TDGLKSEDEQKEA 249 (340)
Q Consensus 174 Vf~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~~L~~a~~----~~~~~~eeE~~ea 249 (340)
|++|+-..+..|....+++... +-..|..-+ . ++ -.+.++|+++|+..=|-+-+ .++. +-+..
T Consensus 332 v~vGsGvQ~l~M~~vti~fA~l----GflSPs~RG--s--Lm-T~~~~l~v~~G~~agY~s~rlyk~~~g~----~wk~~ 398 (628)
T KOG1278|consen 332 VLVGSGVQLLGMILVTIFFACL----GFLSPSSRG--S--LM-TAMVLLFVFMGFVAGYVSARLYKTFKGR----EWKRN 398 (628)
T ss_pred EEeccChhhhHHHHHHHHHHHh----ccCCccccc--c--HH-HHHHHHHHHHHHhhhhhhhhhHhhhcCC----cchhh
Confidence 8888877777777777666542 333344322 1 22 24456777778766554321 1110 00000
Q ss_pred HHhhhhccCCCccchhhHHHHHHHHHHHHHHHhCChhHHHHHHHhcccCCceeehHHHHHHHHHHHHHHHHHHHhhhccc
Q 019473 250 ELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLS 329 (340)
Q Consensus 250 e~~v~~~~~~~~g~~~~~~~f~~aF~l~FLAE~GDKTQLaTiaLAA~~~p~~V~~Ga~lg~~l~t~laVl~G~~l~~~is 329 (340)
+. .+...-|.-+++..|++-|+- ||.+|- ..=|++-++--.+=.++.+++=+++|.+++.|.+
T Consensus 399 --~~------lta~l~PGivf~~~f~lN~~l-W~~~SS--------gAvPF~T~~~ll~LwF~isVPLsf~G~y~g~kk~ 461 (628)
T KOG1278|consen 399 --AI------LTAFLFPGIVFAIFFVLNFFL-WGKHSS--------GAVPFSTMVALLFLWFGISVPLSFVGGYFGFKKP 461 (628)
T ss_pred --HH------hhhhhcchHHHHHHHHHHHHh-hcCCCC--------CcccHHHHHHHHHHHHHhhhhHHHhhHHhhccCC
Confidence 00 011111223567777777776 765531 1125544444444456778888899998887755
No 61
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=23.33 E-value=4.1e+02 Score=28.80 Aligned_cols=84 Identities=13% Similarity=0.103 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCCcccccccccccCCCCcccCCCCcchhHHHHHHHHHHHHHhcCchHHHHHHHHHhcc----C-CcEe
Q 019473 100 KFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFASAFLLIFFSELGDKTFFIAALLAARN----S-AATV 174 (340)
Q Consensus 100 ~lFl~FGl~tLr~a~~~~~~sd~~~~~~~~~~~g~~~~~~~~f~~aF~liFLAElGDKTQLati~LAar~----~-~~~V 174 (340)
...++||+.+.++.-...........-.. . ..+...+|+..+++..+----.-|-++|+.+.+.- + ...|
T Consensus 14 v~l~L~g~~~m~~Gv~~~~G~~lr~~L~~---~--t~np~~gvl~Gi~~T~llQSStatt~lt~gfV~aGl~sl~~Ai~v 88 (533)
T COG1283 14 VALLLFGIKMVGDGVQRAAGDRLRKILAR---F--TSNPILGVLAGIVATALLQSSTATTVLTIGFVAAGLLSLKQAIGV 88 (533)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHH---h--cCCcHHHHHHHHHHHHHHHhcchHHHHHHHHHhccccchhhhhhh
Confidence 45567888888876332221110000000 0 11335678888888888888888888888887662 1 2338
Q ss_pred ehhHHHHHHHHHHH
Q 019473 175 FAGTFGALAAMTVI 188 (340)
Q Consensus 175 f~Ga~lAl~l~t~L 188 (340)
.+|+=+|..+..-+
T Consensus 89 ilGANIGTt~Ta~i 102 (533)
T COG1283 89 ILGANIGTTVTAWI 102 (533)
T ss_pred eeccchhHHHHHHH
Confidence 88887777766544
No 62
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=23.09 E-value=93 Score=23.34 Aligned_cols=35 Identities=17% Similarity=0.499 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHH
Q 019473 182 LAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFG 227 (340)
Q Consensus 182 l~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG 227 (340)
..+++.++..+|+. +.+.++ ++ .++++++++++.|
T Consensus 33 ~~~~~~~G~~~G~~---~~~~~~-~~-------~~~igg~iLi~iG 67 (67)
T PF02659_consen 33 QFIMPLLGLLLGRR---LGRFIG-SY-------AEWIGGIILIFIG 67 (67)
T ss_pred HHHHHHHHHHHHHH---HHHHHH-HH-------HHHHHHHHHHHHC
Confidence 45677788888876 455444 32 5788888777665
No 63
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=22.81 E-value=1.2e+02 Score=28.35 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=30.3
Q ss_pred CCceeehHHHHHHHHHHHHHHHHHHHhhhcccHhHH-hhccc
Q 019473 298 SPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVY-SNFNL 338 (340)
Q Consensus 298 ~p~~V~~Ga~lg~~l~t~laVl~G~~l~~~is~r~i-~~~~~ 338 (340)
.+.-|++|--+|..+--+..++++..+ ..+|++|+ ..+|+
T Consensus 24 ~~~~I~~GqylG~~~Lv~~Sl~~~~~l-~~ip~~wiLGlLGl 64 (191)
T PF03596_consen 24 RRRQIVIGQYLGFTILVLASLLGAFGL-LFIPPEWILGLLGL 64 (191)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHH
Confidence 478889998888877766666666655 58999998 77765
No 64
>PRK00259 intracellular septation protein A; Reviewed
Probab=21.78 E-value=1.9e+02 Score=26.67 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=32.4
Q ss_pred ehhHHHHHHHHHHHHHHHccccccccccCCccccCCCcchhHHHHHHHHHHHHHHHhh
Q 019473 175 FAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLL 232 (340)
Q Consensus 175 f~Ga~lAl~l~t~LaV~~G~~~~~l~~~Lp~r~~~~~~~v~~i~aa~LFl~FG~~~L~ 232 (340)
+..++.++++.+++++....+ ..+++|. .++++.++-++||..+++
T Consensus 22 i~~AT~~~i~a~~~~~~~~~~---~~~~v~~---------m~~i~~~lv~vfGglTl~ 67 (179)
T PRK00259 22 IYAATAALIVATVIQLAISWI---RYRKVEK---------MQLISLVVVVVFGGLTLV 67 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HhCCcch---------hHHHHHHHHHHHHHHHHH
Confidence 445666777778888777765 4556653 466777778888888886
No 65
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=20.94 E-value=8.8e+02 Score=24.58 Aligned_cols=17 Identities=6% Similarity=0.051 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhhccc
Q 019473 220 VCLLVYFGVSTLLDAAS 236 (340)
Q Consensus 220 a~LFl~FG~~~L~~a~~ 236 (340)
+++-++.++.+.....+
T Consensus 54 G~lvl~m~~la~~~~v~ 70 (308)
T PF06166_consen 54 GILVLVMALLAGFGQVG 70 (308)
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 55678888888876654
Done!