Query 019473
Match_columns 340
No_of_seqs 274 out of 1230
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 16:38:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019473.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019473hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lx0_A Membrane fusion protein 18.9 1E+02 0.0034 19.9 2.9 17 216-232 11-27 (32)
2 2i68_A Protein EMRE; transmemb 14.9 3.2E+02 0.011 22.6 6.0 17 216-233 87-103 (137)
3 2j5d_A BNIP3 TM, BCL2/adenovir 14.5 1.4E+02 0.0047 21.1 3.0 19 307-325 25-43 (45)
4 3o7q_A L-fucose-proton symport 14.3 6.4E+02 0.022 22.3 11.2 23 312-334 306-328 (438)
5 1p7a_A BF3, BKLF, kruppel-like 10.9 1.5E+02 0.0051 17.0 2.1 21 9-29 1-21 (37)
6 2jwa_A Receptor tyrosine-prote 8.7 2.2E+02 0.0076 19.8 2.5 29 298-326 9-37 (44)
7 2epx_A Zinc finger protein 28 8.6 2.1E+02 0.0071 17.4 2.2 20 8-27 1-20 (47)
8 2eoh_A Zinc finger protein 28 6.3 3.4E+02 0.012 16.4 2.4 19 9-27 2-20 (46)
9 2ytr_A Zinc finger protein 347 6.1 3.9E+02 0.013 16.0 2.6 19 9-27 2-20 (46)
10 2eop_A Zinc finger protein 268 6.0 3.8E+02 0.013 16.0 2.5 19 9-27 2-20 (46)
No 1
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=18.90 E-value=1e+02 Score=19.94 Aligned_cols=17 Identities=18% Similarity=0.295 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q 019473 216 DIAAVCLLVYFGVSTLL 232 (340)
Q Consensus 216 ~i~aa~LFl~FG~~~L~ 232 (340)
.+++..-|+.||+|+..
T Consensus 11 glvalltflafgfwlfk 27 (32)
T 2lx0_A 11 GLVALLTFLAFGFWLFK 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455679999999764
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=14.94 E-value=3.2e+02 Score=22.62 Aligned_cols=17 Identities=24% Similarity=0.176 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 019473 216 DIAAVCLLVYFGVSTLLD 233 (340)
Q Consensus 216 ~i~aa~LFl~FG~~~L~~ 233 (340)
+++ ++++++.|+..+..
T Consensus 87 ~~~-Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 87 AII-GMMLICAGVLIINL 103 (137)
T ss_dssp CHH-HHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHhc
Confidence 455 44678899988753
No 3
>2j5d_A BNIP3 TM, BCL2/adenovirus E1B 19 kDa protein-interacting protein 3; membrane protein, mitochondrion, transmembrane, transmembrane domain, membrane; NMR {Homo sapiens} PDB: 2ka1_A 2ka2_A
Probab=14.48 E-value=1.4e+02 Score=21.13 Aligned_cols=19 Identities=32% Similarity=0.359 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 019473 307 LAGHVVATLLAVLGGSLLG 325 (340)
Q Consensus 307 ~lg~~l~t~laVl~G~~l~ 325 (340)
.+-|+++.+++|+.|+.++
T Consensus 25 l~shiL~~GlgIyIGkRLs 43 (45)
T 2j5d_A 25 LLSHLLAIGLGIYIGRRLT 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcceEEeeeeec
Confidence 4567888899999998876
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=14.26 E-value=6.4e+02 Score=22.33 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhhhcccHhHHh
Q 019473 312 VATLLAVLGGSLLGTFLSEKVYS 334 (340)
Q Consensus 312 l~t~laVl~G~~l~~~is~r~i~ 334 (340)
++..++.+.+.++.+|+..|.+-
T Consensus 306 ~~~~~~~~~~g~l~~r~~~~~~~ 328 (438)
T 3o7q_A 306 VCFFIGRFTGTWLISRFAPHKVL 328 (438)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchHHH
Confidence 44455556666667777776553
No 5
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=10.94 E-value=1.5e+02 Score=17.02 Aligned_cols=21 Identities=10% Similarity=0.131 Sum_probs=14.7
Q ss_pred cccccccCCCCCCCCCCCCCC
Q 019473 9 SGLKAHSLPSSASYPKASKSC 29 (340)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~ 29 (340)
++.+.|+-..|+.|+.-.|.+
T Consensus 1 ~H~~~h~~~k~~~C~~C~k~f 21 (37)
T 1p7a_A 1 GSTRGSTGIKPFQCPDCDRSF 21 (37)
T ss_dssp CCSSTTCCSSSBCCTTTCCCB
T ss_pred CCCCcCCCCCCccCCCCCccc
Confidence 356778888888888665533
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=8.67 E-value=2.2e+02 Score=19.84 Aligned_cols=29 Identities=34% Similarity=0.468 Sum_probs=17.2
Q ss_pred CCceeehHHHHHHHHHHHHHHHHHHHhhh
Q 019473 298 SPLGVIGGALAGHVVATLLAVLGGSLLGT 326 (340)
Q Consensus 298 ~p~~V~~Ga~lg~~l~t~laVl~G~~l~~ 326 (340)
++.+.++|++.|.++.-.++...+-++-+
T Consensus 9 ~~~~~Ia~~vVGvll~vi~~l~~~~~~RR 37 (44)
T 2jwa_A 9 SPLTSIISAVVGILLVVVLGVVFGILIKR 37 (44)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhheeh
Confidence 45566778888855555555555555543
No 7
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=8.62 E-value=2.1e+02 Score=17.35 Aligned_cols=20 Identities=10% Similarity=-0.144 Sum_probs=15.2
Q ss_pred ccccccccCCCCCCCCCCCC
Q 019473 8 WSGLKAHSLPSSASYPKASK 27 (340)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~ 27 (340)
+++.+.|+-..|+.|+.=.|
T Consensus 1 ~~H~~~H~~~k~~~C~~C~k 20 (47)
T 2epx_A 1 GSSGSSGTGKKPYECIECGK 20 (47)
T ss_dssp CCCCCCCCCCCSBCCSSSCC
T ss_pred CccccccCCCCCEECCccCc
Confidence 46788898888888876544
No 8
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=6.29 E-value=3.4e+02 Score=16.38 Aligned_cols=19 Identities=16% Similarity=-0.045 Sum_probs=14.3
Q ss_pred cccccccCCCCCCCCCCCC
Q 019473 9 SGLKAHSLPSSASYPKASK 27 (340)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~ 27 (340)
++.+.|+-..|+.|+.=.|
T Consensus 2 ~H~~~H~~~k~~~C~~C~k 20 (46)
T 2eoh_A 2 SSGSSGSGKKPYECKECRK 20 (46)
T ss_dssp CCCCSCCCSCSCCCSSSCC
T ss_pred CCCCCcCCCCCcCCCCcCc
Confidence 5778888888888876444
No 9
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=6.06 E-value=3.9e+02 Score=15.96 Aligned_cols=19 Identities=11% Similarity=-0.052 Sum_probs=14.5
Q ss_pred cccccccCCCCCCCCCCCC
Q 019473 9 SGLKAHSLPSSASYPKASK 27 (340)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~ 27 (340)
++.+.|+-..|+.|+.=.|
T Consensus 2 ~H~~~H~~~k~~~C~~C~k 20 (46)
T 2ytr_A 2 SSGSSGTGEKPYKCNECGK 20 (46)
T ss_dssp CSSCCCSSCCTTCCTTTCC
T ss_pred CCCcCCCCCcCcCCCCCCC
Confidence 5678888888888876555
No 10
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=5.99 E-value=3.8e+02 Score=16.01 Aligned_cols=19 Identities=11% Similarity=-0.025 Sum_probs=14.2
Q ss_pred cccccccCCCCCCCCCCCC
Q 019473 9 SGLKAHSLPSSASYPKASK 27 (340)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~ 27 (340)
.+.+.|+-..|++|+.=.|
T Consensus 2 ~H~~~H~~~~~~~C~~C~k 20 (46)
T 2eop_A 2 SSGSSGTGEKPHECRECGK 20 (46)
T ss_dssp CCCCSCCCCCSCBCTTTCC
T ss_pred CCccccCCCCCeeCCCCCc
Confidence 5677888888888876555
Done!