Query 019473
Match_columns 340
No_of_seqs 274 out of 1230
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 16:38:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019473.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019473hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zuea1 g.9.1.1 (A:1-42) Defen 8.0 44 0.0032 21.4 0.3 11 70-80 31-41 (42)
2 d1pv7a_ f.38.1.2 (A:) Lactose 6.8 2.2E+02 0.016 22.0 4.3 18 316-333 274-291 (417)
3 d2r6gg1 f.58.1.1 (G:7-296) Mal 6.0 6.1E+02 0.044 20.0 8.4 18 268-285 207-224 (290)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 4.8 7.3E+02 0.053 19.5 7.3 13 316-328 300-312 (447)
5 d2mrba_ g.46.1.1 (A:) Metallot 4.3 1.7E+02 0.012 17.3 1.4 24 62-85 5-28 (31)
6 d1kqfb2 f.23.22.1 (B:246-290) 3.8 1.7E+02 0.012 18.9 1.2 9 216-224 13-21 (45)
7 d1z1ba1 d.10.1.4 (A:11-59) lam 3.8 1.3E+02 0.0094 19.9 0.6 19 34-56 2-20 (49)
8 d1dnva_ b.121.5.3 (A:) Densovi 3.7 86 0.0063 29.0 -0.5 35 31-68 69-103 (415)
9 d1p7aa_ g.37.1.1 (A:) Kruppel- 3.6 2.5E+02 0.018 16.6 1.9 20 10-29 2-21 (37)
10 d1q90g_ f.23.26.1 (G:) PetG su 3.6 4.5E+02 0.033 15.3 3.3 22 303-324 6-27 (30)
No 1
>d1zuea1 g.9.1.1 (A:1-42) Defensin-like peptide, DLP {Duckbilled platypus (Ornithorhynchus anatinus), DLP-2 [TaxId: 9258]}
Probab=8.04 E-value=44 Score=21.39 Aligned_cols=11 Identities=55% Similarity=1.035 Sum_probs=8.4
Q ss_pred cccccCCcccc
Q 019473 70 SCENRNDVDCK 80 (340)
Q Consensus 70 ~~~~~~~~~~~ 80 (340)
-|||+|.+-|+
T Consensus 31 ycen~nq~cc~ 41 (42)
T d1zuea1 31 YCENRNQKCCE 41 (42)
T ss_dssp BCSSTTEEEEC
T ss_pred eecCCCccccc
Confidence 47899987774
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=6.76 E-value=2.2e+02 Score=22.03 Aligned_cols=18 Identities=11% Similarity=-0.049 Sum_probs=7.7
Q ss_pred HHHHHHHHhhhcccHhHH
Q 019473 316 LAVLGGSLLGTFLSEKVY 333 (340)
Q Consensus 316 laVl~G~~l~~~is~r~i 333 (340)
++.....++.+|...+.+
T Consensus 274 ~~~~~~~~l~~r~~~~~~ 291 (417)
T d1pv7a_ 274 SIMFFAPLIINRIGGKNA 291 (417)
T ss_dssp HHHTTHHHHHHHHCHHHH
T ss_pred cchhhhhhhhcccccccc
Confidence 333334444455444433
No 3
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=5.99 E-value=6.1e+02 Score=20.05 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhCCh
Q 019473 268 STIISTFTLVFVAEWGDK 285 (340)
Q Consensus 268 ~~f~~aF~l~FLAE~GDK 285 (340)
+.++.++++.|+.-|+|=
T Consensus 207 p~i~~~~il~fi~~~~~f 224 (290)
T d2r6gg1 207 PILAVVFILSFIAAITEV 224 (290)
T ss_dssp HHHHHHHHHHHHHHHTCC
T ss_pred hhhhhHHHHHhhhhcccc
Confidence 356788888999888774
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=4.76 E-value=7.3e+02 Score=19.49 Aligned_cols=13 Identities=8% Similarity=-0.069 Sum_probs=5.1
Q ss_pred HHHHHHHHhhhcc
Q 019473 316 LAVLGGSLLGTFL 328 (340)
Q Consensus 316 laVl~G~~l~~~i 328 (340)
++.+.+.++.+|+
T Consensus 300 ~~~~~~g~~~~~~ 312 (447)
T d1pw4a_ 300 PGTLLCGWMSDKV 312 (447)
T ss_dssp HHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhc
Confidence 3333333344443
No 5
>d2mrba_ g.46.1.1 (A:) Metallothionein {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=4.28 E-value=1.7e+02 Score=17.27 Aligned_cols=24 Identities=42% Similarity=0.809 Sum_probs=16.2
Q ss_pred hhhcCCCCcccccCCccccccccc
Q 019473 62 ELCRDPGASCENRNDVDCKNCKMT 85 (340)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~ 85 (340)
+++.--|+||.-.++-.|+.+|-+
T Consensus 5 cscaaagdsc~ca~sctck~ckct 28 (31)
T d2mrba_ 5 CSCAAAGDSCTCANSCTCKACKCT 28 (31)
T ss_dssp CCCCCSSSCCCCSSCCCCSSCCCT
T ss_pred ccccccCCcccccCceeecceeee
Confidence 455566788877777677766654
No 6
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=3.82 E-value=1.7e+02 Score=18.93 Aligned_cols=9 Identities=11% Similarity=0.017 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 019473 216 DIAAVCLLV 224 (340)
Q Consensus 216 ~i~aa~LFl 224 (340)
+-++.+.|.
T Consensus 13 Kpl~~~~~~ 21 (45)
T d1kqfb2 13 KPLAAAGFI 21 (45)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334443333
No 7
>d1z1ba1 d.10.1.4 (A:11-59) lambda integrase N-terminal domain {Bacteriophage lambda [TaxId: 10710]}
Probab=3.76 E-value=1.3e+02 Score=19.89 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=12.5
Q ss_pred ccCCccccccCCCcccccccCCc
Q 019473 34 FPFNSLCKNQTSTSKKLSLRNPY 56 (340)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~ 56 (340)
+|+|-.||.. .-+.+|||.
T Consensus 2 LPpNLY~k~~----~y~~yr~P~ 20 (49)
T d1z1ba1 2 LPPNLYIRNN----GYYCYRDPR 20 (49)
T ss_dssp CCTTEEEETT----TEEEEECTT
T ss_pred CCccceeccC----CeEEeecCC
Confidence 5777777644 356677775
No 8
>d1dnva_ b.121.5.3 (A:) Densovirus capsid protein {Galleria mellonella densovirus [TaxId: 37138]}
Probab=3.72 E-value=86 Score=28.96 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=28.3
Q ss_pred cccccCCccccccCCCcccccccCCcchhhhhhhcCCC
Q 019473 31 SKLFPFNSLCKNQTSTSKKLSLRNPYLNFSRELCRDPG 68 (340)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (340)
+.++|.-++|++- +.|.-.||||+.|.--+....-
T Consensus 69 F~lLP~Gs~v~e~---~vkvv~rn~RiAFeTnSS~T~l 103 (415)
T d1dnva_ 69 FDLLPPGSRVVEC---NVKVIFRTNRIAFETSSTVTKQ 103 (415)
T ss_dssp HHTCCTTCBCCCE---EEEEEEEEEEECCCCSCTTSCC
T ss_pred HhhcCCCceEEEE---EEEEEEecCeeEEEecCccccc
Confidence 4489999999888 8999999999999766654433
No 9
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.64 E-value=2.5e+02 Score=16.55 Aligned_cols=20 Identities=10% Similarity=0.130 Sum_probs=15.7
Q ss_pred ccccccCCCCCCCCCCCCCC
Q 019473 10 GLKAHSLPSSASYPKASKSC 29 (340)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~ 29 (340)
+.|.|+--.||+|+.=.|++
T Consensus 2 h~R~HTgeKPy~C~~C~k~F 21 (37)
T d1p7aa_ 2 STRGSTGIKPFQCPDCDRSF 21 (37)
T ss_dssp CSSTTCCSSSBCCTTTCCCB
T ss_pred CCCccCCccCeEeCCCCCEe
Confidence 46889999999998766644
No 10
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.60 E-value=4.5e+02 Score=15.34 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=17.3
Q ss_pred ehHHHHHHHHHHHHHHHHHHHh
Q 019473 303 IGGALAGHVVATLLAVLGGSLL 324 (340)
Q Consensus 303 ~~Ga~lg~~l~t~laVl~G~~l 324 (340)
..|-++|++-.++.+.+...++
T Consensus 6 l~GivlGlipiTl~Glfv~Ayl 27 (30)
T d1q90g_ 6 LCGIVLGLVPVTIAGLFVTAYL 27 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHhhHHHHHHHHHHHHHH
Confidence 4588899998888888776665
Done!