Query 019476
Match_columns 340
No_of_seqs 343 out of 1744
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 09:46:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019476.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019476hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4442 Clathrin coat binding 100.0 6.5E-56 1.4E-60 445.6 16.7 223 36-258 36-265 (729)
2 KOG1082 Histone H3 (Lys9) meth 100.0 1.1E-36 2.3E-41 298.7 12.2 226 27-256 71-357 (364)
3 KOG1080 Histone H3 (Lys4) meth 100.0 4.5E-33 9.8E-38 296.1 11.7 139 115-253 867-1005(1005)
4 KOG1079 Transcriptional repres 100.0 3.6E-30 7.8E-35 258.6 9.5 150 84-235 553-713 (739)
5 smart00317 SET SET (Su(var)3-9 99.9 6.8E-26 1.5E-30 184.1 14.2 115 116-230 2-116 (116)
6 KOG1141 Predicted histone meth 99.9 1.3E-26 2.7E-31 236.0 4.0 125 26-150 683-835 (1262)
7 KOG1083 Putative transcription 99.9 5.1E-26 1.1E-30 236.6 3.0 134 103-237 1166-1300(1306)
8 KOG1085 Predicted methyltransf 99.8 1E-19 2.2E-24 168.1 9.9 120 114-233 256-379 (392)
9 COG2940 Proteins containing SE 99.7 1.3E-18 2.8E-23 176.8 6.1 150 102-252 320-479 (480)
10 PF00856 SET: SET domain; Int 99.7 2.4E-16 5.2E-21 133.4 8.9 107 125-231 1-162 (162)
11 KOG1081 Transcription factor N 99.5 7.2E-15 1.6E-19 148.0 1.6 156 87-258 286-442 (463)
12 KOG2589 Histone tail methylase 99.2 4.7E-12 1E-16 121.0 4.4 126 122-254 135-261 (453)
13 smart00570 AWS associated with 99.2 6.5E-12 1.4E-16 88.6 2.0 49 64-112 2-50 (51)
14 KOG1081 Transcription factor N 98.6 1.8E-08 3.9E-13 102.0 3.0 258 1-261 1-272 (463)
15 PF05033 Pre-SET: Pre-SET moti 98.5 5.1E-08 1.1E-12 78.8 2.3 84 22-106 3-103 (103)
16 KOG2461 Transcription factor B 98.3 7.9E-07 1.7E-11 88.3 5.7 109 113-234 27-146 (396)
17 smart00468 PreSET N-terminal t 97.8 1.8E-05 4E-10 63.5 4.1 57 21-77 4-61 (98)
18 PF09465 LBR_tudor: Lamin-B re 96.8 0.0012 2.6E-08 47.2 3.3 38 299-336 7-45 (55)
19 smart00508 PostSET Cysteine-ri 96.3 0.0019 4E-08 39.3 1.3 18 238-255 2-19 (26)
20 KOG1141 Predicted histone meth 95.9 0.019 4.1E-07 61.1 6.9 163 90-252 981-1261(1262)
21 KOG2084 Predicted histone tail 92.2 0.23 5.1E-06 49.6 5.4 43 190-236 208-251 (482)
22 KOG1337 N-methyltransferase [G 84.7 0.67 1.4E-05 47.4 2.7 41 189-232 238-278 (472)
23 PF03638 TCR: Tesmin/TSO1-like 66.2 3.7 8.1E-05 27.9 1.4 37 65-107 3-40 (42)
24 PF08666 SAF: SAF domain; Int 61.2 5.2 0.00011 28.5 1.5 15 213-227 3-17 (63)
25 KOG1338 Uncharacterized conser 48.6 12 0.00025 37.6 2.0 39 187-231 218-259 (466)
26 PF00856 SET: SET domain; Int 42.8 14 0.00031 30.1 1.5 17 212-228 2-18 (162)
27 PF02067 Metallothio_5: Metall 42.6 19 0.00041 24.3 1.7 22 80-103 6-27 (41)
28 cd00600 Sm_like The eukaryotic 37.6 30 0.00064 24.6 2.3 29 297-325 2-30 (63)
29 KOG1079 Transcriptional repres 36.0 15 0.00033 39.0 0.7 29 79-107 511-539 (739)
30 KOG2155 Tubulin-tyrosine ligas 34.9 20 0.00044 36.5 1.4 48 186-233 203-252 (631)
31 KOG1171 Metallothionein-like p 33.9 12 0.00025 37.7 -0.5 37 63-105 215-252 (406)
32 smart00858 SAF This domain fam 33.3 28 0.0006 24.5 1.6 16 213-228 3-18 (64)
33 cd01731 archaeal_Sm1 The archa 32.4 32 0.0007 25.3 1.8 32 295-326 4-35 (68)
34 PRK00737 small nuclear ribonuc 32.0 29 0.00064 25.9 1.6 34 292-325 5-38 (72)
35 PF01423 LSM: LSM domain ; In 30.3 38 0.00083 24.5 1.9 30 296-325 3-32 (67)
36 cd01730 LSm3 The eukaryotic Sm 29.7 39 0.00084 26.0 1.9 32 294-325 4-35 (82)
37 smart00317 SET SET (Su(var)3-9 28.5 92 0.002 24.0 4.1 16 126-141 98-113 (116)
38 PF14100 PmoA: Methane oxygena 26.1 95 0.0021 29.4 4.3 44 190-234 205-254 (271)
39 cd01720 Sm_D2 The eukaryotic S 25.7 39 0.00084 26.5 1.3 31 294-324 5-37 (87)
40 cd01732 LSm5 The eukaryotic Sm 25.3 46 0.00099 25.4 1.6 33 293-325 5-37 (76)
41 cd01727 LSm8 The eukaryotic Sm 20.8 85 0.0018 23.5 2.3 29 297-325 5-33 (74)
No 1
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.5e-56 Score=445.65 Aligned_cols=223 Identities=40% Similarity=0.807 Sum_probs=206.9
Q ss_pred CCCCCCCCcEEccceeeccccccccCCCCCCcccccCCCCC----CCCCCCCCCccceeeeCCC-CCC-CCCCCCCccCc
Q 019476 36 FIKPKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGS----SGVCDRDCHCGMLLSSCSS-GCK-CGNSCLNKPFQ 109 (340)
Q Consensus 36 ~~~~~p~~f~~I~~n~~~~~~~~~~~~~~~~~C~C~~~~~~----~~~C~~~C~c~~~~~eC~~-~C~-C~~~C~Nr~~q 109 (340)
.....|..|.-+..+.|..+..+...+.+.+.|+|.+..++ .+.|+.+|+|+++..||++ .|+ ||..|+|++||
T Consensus 36 ~k~e~~~~f~~~~e~~y~~krk~~~ee~~~m~Cdc~~~~~d~~n~~~~cg~~CiNr~t~iECs~~~C~~cg~~C~NQRFQ 115 (729)
T KOG4442|consen 36 LKEEALTKFENLDEKFYANKRKKKKEENDEMICDCKPKTGDGANGACACGEDCINRMTSIECSDRECPRCGVYCKNQRFQ 115 (729)
T ss_pred hhcccchhhhhhhhhhhHHhhccCcccCcceeeecccccccccccccccCccccchhhhcccCCccCCCccccccchhhh
Confidence 34567888899999999887655554447789999996543 5678999999999999999 799 99999999999
Q ss_pred cCCcccEEEEEecCCCcEEEeccccCCCceEEEEeeEEechhhHHHHHHHhhhcCCCceEEeeeccceEEeecccCCccc
Q 019476 110 NRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSR 189 (340)
Q Consensus 110 ~~~~~~l~i~~t~~kG~GlfA~~~I~~G~~I~ey~Geii~~~e~~~r~~~~~~~~~~~~y~~~l~~~~~IDa~~~Gn~aR 189 (340)
+.+..+++||.|+++||||+|.++|++|+||+||.||||+..+++.|...|...+..++|+|.+..+.+|||+.+||+||
T Consensus 116 kkqyA~vevF~Te~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~kR~~~Y~~d~~kh~Yfm~L~~~e~IDAT~KGnlaR 195 (729)
T KOG4442|consen 116 KKQYAKVEVFLTEKKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEKRVKRYAKDGIKHYYFMALQGGEYIDATKKGNLAR 195 (729)
T ss_pred hhccCceeEEEecCcccceeeccccCCCcEEeeeccccccHHHHHHHHHHHHhcCCceEEEEEecCCceecccccCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcceeEEEECCeEEEEEEEcCCCCCCCeEEEecCCCcCCCC-ceeecCCCCCccccCCCCCC
Q 019476 190 YINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGAD-QDCHCGAAGCRRKLGAKPSK 258 (340)
Q Consensus 190 fINHSC~PN~~~~~~~~~g~~ri~i~A~RdI~~GEELT~dY~~~~~~~~-~~C~Cgs~~Crg~l~~~~~~ 258 (340)
||||||+|||.+++|.|++..||+|||.|+|.+||||||||++++||.+ +.|.||+++||||||+++..
T Consensus 196 FiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf~rYGr~AQ~CyCgeanC~G~IGgk~q~ 265 (729)
T KOG4442|consen 196 FINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQFDRYGRDAQPCYCGEANCRGWIGGKPQT 265 (729)
T ss_pred hhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEecccccccccccccccCCcccccccCCCCcc
Confidence 9999999999999999999999999999999999999999999999875 99999999999999999543
No 2
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.1e-36 Score=298.66 Aligned_cols=226 Identities=31% Similarity=0.510 Sum_probs=172.0
Q ss_pred CeeEeCCCCCCCCCCCCcEEccceeeccccccccCCCCCCcccccCCCCCCCCCCCCCCc--------------------
Q 019476 27 PVEFELPDWFIKPKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSSGVCDRDCHC-------------------- 86 (340)
Q Consensus 27 ~~~~~lp~~~~~~~p~~f~~I~~n~~~~~~~~~~~~~~~~~C~C~~~~~~~~~C~~~C~c-------------------- 86 (340)
..+..+-+.++...++.|.||...++... ..........|.|...+... .|. .|.|
T Consensus 71 ~~~v~~~n~id~~~~~~f~y~~~~~~~~~--~~~~~~~~~~c~C~~~~~~~-~~~-~C~C~~~n~~~~~~~~~~~~~~~~ 146 (364)
T KOG1082|consen 71 NLPVPLVNRIDEDAPLYFQYIATEIVDPG--ELSDCENSTGCRCCSSCSSV-LPL-TCLCERHNGGLVAYTCDGDCGTLG 146 (364)
T ss_pred cCceeeeeeccCCccccceeccccccCcc--ccccCccccCCCccCCCCCC-CCc-cccChHhhCCccccccCCcccccc
Confidence 33444434444444488999999888654 12333456779999866432 111 2333
Q ss_pred --cceeeeCCCCCCCCCCCCCccCccCCcccEEEEEecCCCcEEEeccccCCCceEEEEeeEEechhhHHHHHHHhhhcC
Q 019476 87 --GMLLSSCSSGCKCGNSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLG 164 (340)
Q Consensus 87 --~~~~~eC~~~C~C~~~C~Nr~~q~~~~~~l~i~~t~~kG~GlfA~~~I~~G~~I~ey~Geii~~~e~~~r~~~~~~~~ 164 (340)
+..++||++.|+|+..|.||++|.+...+++|++++.+||||++.+.|++|+||+||+||+++..+++.+........
T Consensus 147 ~~~~~i~EC~~~C~C~~~C~nRv~q~g~~~~leIfrt~~kGwgvRs~~~I~~G~fvcEyaGe~~t~~e~~~~~~~~~~~~ 226 (364)
T KOG1082|consen 147 KFKEPVFECSVACGCHPDCANRVVQKGLQFHLEVFRTPEKGWGVRTLDPIPAGEFVCEYAGEVLTSEEAQRRTHLREYLD 226 (364)
T ss_pred ccCccccccccCCCCCCcCcchhhccccccceEEEecCCceeeecccccccCCCeeEEEeeEecChHHhhhccccccccc
Confidence 124899999999999999999999999999999999999999999999999999999999999999887732221111
Q ss_pred C--CceE---------------------EeeeccceEEeecccCCccccccCCCCCCcceeEEEECC----eEEEEEEEc
Q 019476 165 E--TNFY---------------------LCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDG----ETRIGIFAT 217 (340)
Q Consensus 165 ~--~~~y---------------------~~~l~~~~~IDa~~~Gn~aRfINHSC~PN~~~~~~~~~g----~~ri~i~A~ 217 (340)
. ..++ .......+.|||...||++|||||||.||+.++.+..++ .++++|||+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ida~~~GNv~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~ 306 (364)
T KOG1082|consen 227 DDCDAYSIADREWVDESPVGNTFVAPSLPGGPGRELLIDAKPHGNVARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFAL 306 (364)
T ss_pred cccccchhhhccccccccccccccccccccCCCcceEEchhhcccccccccCCCCccceeeeeeecCCccchheeeeeec
Confidence 1 1110 112245689999999999999999999999998887764 378999999
Q ss_pred CCCCCCCeEEEecCCCcC------------CCCceeecCCCCCccccCCCC
Q 019476 218 RDIKKGENLTYDYQFVQF------------GADQDCHCGAAGCRRKLGAKP 256 (340)
Q Consensus 218 RdI~~GEELT~dY~~~~~------------~~~~~C~Cgs~~Crg~l~~~~ 256 (340)
++|.+|||||+||+..+. .....|.||+.+||+.+....
T Consensus 307 ~~I~p~~ELT~dYg~~~~~~~~~~~~~~~~~~~~~c~c~~~~cr~~~~~~~ 357 (364)
T KOG1082|consen 307 RDISPGEELTLDYGKAYKLLVQDGANIYTPVMKKNCNCGLEKCRGLLGSAP 357 (364)
T ss_pred cccCCCcccchhhcccccccccccccccccccchhhcCCCHHhCcccCCCc
Confidence 999999999999996632 124689999999999997654
No 3
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=4.5e-33 Score=296.07 Aligned_cols=139 Identities=40% Similarity=0.693 Sum_probs=132.8
Q ss_pred cEEEEEecCCCcEEEeccccCCCceEEEEeeEEechhhHHHHHHHhhhcCCCceEEeeeccceEEeecccCCccccccCC
Q 019476 115 KMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHS 194 (340)
Q Consensus 115 ~l~i~~t~~kG~GlfA~~~I~~G~~I~ey~Geii~~~e~~~r~~~~~~~~~~~~y~~~l~~~~~IDa~~~Gn~aRfINHS 194 (340)
.|...++..+||||||.+.|.+|++|+||+||+|...-++.|...|...+....|+|.++...+|||+..||+|||||||
T Consensus 867 ~~~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~Y~~~gi~~sYlfrid~~~ViDAtk~gniAr~InHs 946 (1005)
T KOG1080|consen 867 YVKFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREARYERMGIGDSYLFRIDDEVVVDATKKGNIARFINHS 946 (1005)
T ss_pred hhccccccccccceeeccCccccceEEEeeceehhhhHHHHHHHHHhccCcccceeeecccceEEeccccCchhheeecc
Confidence 36777899999999999999999999999999999999999998888888889999999999999999999999999999
Q ss_pred CCCCcceeEEEECCeEEEEEEEcCCCCCCCeEEEecCCCcCCCCceeecCCCCCccccC
Q 019476 195 CCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGADQDCHCGAAGCRRKLG 253 (340)
Q Consensus 195 C~PN~~~~~~~~~g~~ri~i~A~RdI~~GEELT~dY~~~~~~~~~~C~Cgs~~Crg~l~ 253 (340)
|+|||....+.|+|+.+|+|||.|+|.+||||||||.|.....+..|+||+++|||++.
T Consensus 947 C~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF~~e~~kipClCgap~Crg~~n 1005 (1005)
T KOG1080|consen 947 CNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKFPTEDDKIPCLCGAPNCRGFLN 1005 (1005)
T ss_pred cCCCceeeEEEecCeeEEEEEEecccccCceeeeeccccccccccccccCCCccccccC
Confidence 99999999999999999999999999999999999999998889999999999999973
No 4
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=99.96 E-value=3.6e-30 Score=258.64 Aligned_cols=150 Identities=35% Similarity=0.643 Sum_probs=137.4
Q ss_pred CCccceeeeCCCC-CCC-C---------CCCCCccCccCCcccEEEEEecCCCcEEEeccccCCCceEEEEeeEEechhh
Q 019476 84 CHCGMLLSSCSSG-CKC-G---------NSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQT 152 (340)
Q Consensus 84 C~c~~~~~eC~~~-C~C-~---------~~C~Nr~~q~~~~~~l~i~~t~~kG~GlfA~~~I~~G~~I~ey~Geii~~~e 152 (340)
|.|.+-..||.|. |.+ + -+|.|-.+|++.++++.+.++...|||||+.+.+.+++||.||+||+|+++|
T Consensus 553 CpC~~A~rECdPd~Cl~cg~~~~~d~~~~~C~N~~l~~~~qkr~llapSdVaGwGlFlKe~v~KnefisEY~GE~IS~dE 632 (739)
T KOG1079|consen 553 CPCYLAVRECDPDVCLMCGNVDHFDSSKISCKNTNLQRGEQKRVLLAPSDVAGWGLFLKESVSKNEFISEYTGEIISHDE 632 (739)
T ss_pred CchhhhccccCchHHhccCcccccccCccccccchhhhhhhcceeechhhccccceeeccccCCCceeeeecceeccchh
Confidence 6677778888864 543 2 3899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCceEEeeeccceEEeecccCCccccccCCCCCCcceeEEEECCeEEEEEEEcCCCCCCCeEEEecCC
Q 019476 153 CEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQF 232 (340)
Q Consensus 153 ~~~r~~~~~~~~~~~~y~~~l~~~~~IDa~~~Gn~aRfINHSC~PN~~~~~~~~~g~~ri~i~A~RdI~~GEELT~dY~~ 232 (340)
+++|.+.+.... .+|+|++..+++|||+++||.+||+|||-+|||....+.+.|..||+|||.|.|.+||||||||++
T Consensus 633 ADrRGkiYDr~~--cSflFnln~dyviDs~rkGnk~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrY 710 (739)
T KOG1079|consen 633 ADRRGKIYDRYM--CSFLFNLNNDYVIDSTRKGNKIRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRY 710 (739)
T ss_pred hhhccccccccc--ceeeeeccccceEeeeeecchhhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeecc
Confidence 999988776554 569999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcC
Q 019476 233 VQF 235 (340)
Q Consensus 233 ~~~ 235 (340)
+..
T Consensus 711 s~~ 713 (739)
T KOG1079|consen 711 SPE 713 (739)
T ss_pred Ccc
Confidence 754
No 5
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.94 E-value=6.8e-26 Score=184.12 Aligned_cols=115 Identities=49% Similarity=0.780 Sum_probs=101.4
Q ss_pred EEEEEecCCCcEEEeccccCCCceEEEEeeEEechhhHHHHHHHhhhcCCCceEEeeeccceEEeecccCCccccccCCC
Q 019476 116 MKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHSC 195 (340)
Q Consensus 116 l~i~~t~~kG~GlfA~~~I~~G~~I~ey~Geii~~~e~~~r~~~~~~~~~~~~y~~~l~~~~~IDa~~~Gn~aRfINHSC 195 (340)
+++++++++|+||||+++|++|++|++|.|.++...+.......+........|++.....++||+...||++|||||||
T Consensus 2 ~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~iNHsc 81 (116)
T smart00317 2 LEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERSKAYDTDGADSFYLFEIDSDLCIDARRKGNIARFINHSC 81 (116)
T ss_pred cEEEecCCCcEEEEECCccCCCCEEEEEEeEEECHHHHHHHHHHHHhcCCCCEEEEECCCCEEEeCCccCcHHHeeCCCC
Confidence 56788899999999999999999999999999998887776543444443357888887789999999999999999999
Q ss_pred CCCcceeEEEECCeEEEEEEEcCCCCCCCeEEEec
Q 019476 196 CPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDY 230 (340)
Q Consensus 196 ~PN~~~~~~~~~g~~ri~i~A~RdI~~GEELT~dY 230 (340)
.||+.+..+..++..++.++|+|||++|||||+||
T Consensus 82 ~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 82 EPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 99999988888877799999999999999999999
No 6
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=99.92 E-value=1.3e-26 Score=235.96 Aligned_cols=125 Identities=22% Similarity=0.293 Sum_probs=99.1
Q ss_pred CCeeEeCCCCCCCCCCCCcEEccceeeccccccccCCCCCCcccccCCCCCCCCCC--------CCCC--------ccc-
Q 019476 26 NPVEFELPDWFIKPKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSSGVCD--------RDCH--------CGM- 88 (340)
Q Consensus 26 ~~~~~~lp~~~~~~~p~~f~~I~~n~~~~~~~~~~~~~~~~~C~C~~~~~~~~~C~--------~~C~--------c~~- 88 (340)
|.+++...++++..+||.+.|-+..|....++.....+....|+|..+|..+..|. ..|. ++.
T Consensus 683 e~vpis~~neids~~lpq~ay~K~~ip~~~nl~n~~~~fl~scdc~~gcid~~kcachQltvk~~~t~p~~~v~~t~gyk 762 (1262)
T KOG1141|consen 683 EHVPISEKNEIDSHRLPQAAYKKHMIPTNNNLSNRRKDFLQSCDCPTGCIDSMKCACHQLTVKKKTTGPNQNVASTNGYK 762 (1262)
T ss_pred cccccceeecccCcCCccchhheeeccCCCcccccChhhhhcCCCCcchhhhhhhhHHHHHHHhhccCCCcccccCcchh
Confidence 44555555666778899999999887777777777778889999999875554441 0111 000
Q ss_pred ----------eeeeCCCCCCCC-CCCCCccCccCCcccEEEEEecCCCcEEEeccccCCCceEEEEeeEEech
Q 019476 89 ----------LLSSCSSGCKCG-NSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDD 150 (340)
Q Consensus 89 ----------~~~eC~~~C~C~-~~C~Nr~~q~~~~~~l~i~~t~~kG~GlfA~~~I~~G~~I~ey~Geii~~ 150 (340)
-.+||+..|.|. ..|.||++|.+.+.+++++++..+|||++...+|.+|.||+-|.|.++++
T Consensus 763 yKRl~e~~ptg~yEc~k~ckc~~~~C~nrmvqhg~qvRlq~fkt~~kGWg~rclddi~~g~fVciy~g~~l~~ 835 (1262)
T KOG1141|consen 763 YKRLIEIRPTGPYECLKACKCCGPDCLNRMVQHGYQVRLQRFKTIHKGWGRRCLDDITGGNFVCIYPGGALLH 835 (1262)
T ss_pred hHHHHHhcCCCHHHHHHhhccCcHHHHHHHhhcCceeEeeeccccccccceEeeeecCCceEEEEecchhhhh
Confidence 178999999886 67999999999999999999999999999999999999999999987654
No 7
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=99.91 E-value=5.1e-26 Score=236.59 Aligned_cols=134 Identities=43% Similarity=0.801 Sum_probs=120.3
Q ss_pred CCCccCccCC-cccEEEEEecCCCcEEEeccccCCCceEEEEeeEEechhhHHHHHHHhhhcCCCceEEeeeccceEEee
Q 019476 103 CLNKPFQNRP-VKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDA 181 (340)
Q Consensus 103 C~Nr~~q~~~-~~~l~i~~t~~kG~GlfA~~~I~~G~~I~ey~Geii~~~e~~~r~~~~~~~~~~~~y~~~l~~~~~IDa 181 (340)
|+|+.+|+.. -.+|.+++.+.+||||.|.++|++|+||+||+|+|++.++++.++..... ...+.|...++.+++||+
T Consensus 1166 c~nqrm~r~e~cp~L~v~~gp~~G~~v~tk~PikagtfI~EYvGeVit~ke~e~~mmtl~~-~d~~~~cL~I~p~l~id~ 1244 (1306)
T KOG1083|consen 1166 CSNQRMQRHEECPPLEVFRGPKKGWGVRTKEPIKAGTFIMEYVGEVITEKEFEPRMMTLYH-NDDDHYCLVIDPGLFIDI 1244 (1306)
T ss_pred hhhHHhhhhccCCCcceeccCCCCccccccccccccchHHHHHHHHHHHHhhcccccccCC-CCCcccccccCccccCCh
Confidence 8889988765 46899999999999999999999999999999999999998887433332 344568999999999999
Q ss_pred cccCCccccccCCCCCCcceeEEEECCeEEEEEEEcCCCCCCCeEEEecCCCcCCC
Q 019476 182 TYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGA 237 (340)
Q Consensus 182 ~~~Gn~aRfINHSC~PN~~~~~~~~~g~~ri~i~A~RdI~~GEELT~dY~~~~~~~ 237 (340)
.++||.+||+||||.|||+++.|.++|.+|++|||+|||.+||||||||++..++.
T Consensus 1245 ~R~~n~~RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~ks~~~ 1300 (1306)
T KOG1083|consen 1245 PRMGNGARFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNFKSFNY 1300 (1306)
T ss_pred hhccccccccccccCCCCccccccccceeeeeeeecCCCCCCceEEEeccccccCC
Confidence 99999999999999999999999999999999999999999999999999876643
No 8
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=99.80 E-value=1e-19 Score=168.10 Aligned_cols=120 Identities=31% Similarity=0.420 Sum_probs=104.3
Q ss_pred ccEEEEEecCCCcEEEeccccCCCceEEEEeeEEechhhHHHHHHHhhhcC---CCceEEeeeccceEEeeccc-CCccc
Q 019476 114 KKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLG---ETNFYLCEINRDMVIDATYK-GNKSR 189 (340)
Q Consensus 114 ~~l~i~~t~~kG~GlfA~~~I~~G~~I~ey~Geii~~~e~~~r~~~~~~~~---~~~~y~~~l~~~~~IDa~~~-Gn~aR 189 (340)
..+.+....+||.||+|+..+++|+||.||.|.+|.-.++..|...+..+. ...+|+-.....++|||+.. +-++|
T Consensus 256 egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdliei~eAk~rE~~Ya~De~~GcYMYyF~h~sk~yCiDAT~et~~lGR 335 (392)
T KOG1085|consen 256 EGLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDLIEISEAKVREEQYANDEEIGCYMYYFEHNSKKYCIDATKETPWLGR 335 (392)
T ss_pred cceeEEeeccccceeEeecccccCceEEEEecceeeechHHHHHHHhccCcccceEEEeeeccCeeeeeecccccccchh
Confidence 456777778899999999999999999999999999999888877665443 34455556678899999965 45799
Q ss_pred cccCCCCCCcceeEEEECCeEEEEEEEcCCCCCCCeEEEecCCC
Q 019476 190 YINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFV 233 (340)
Q Consensus 190 fINHSC~PN~~~~~~~~~g~~ri~i~A~RdI~~GEELT~dY~~~ 233 (340)
.||||=.+|+....+.++|.++++++|.|||.+||||+||||.-
T Consensus 336 LINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDR 379 (392)
T KOG1085|consen 336 LINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDR 379 (392)
T ss_pred hhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhcccc
Confidence 99999999999999999999999999999999999999999963
No 9
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=99.74 E-value=1.3e-18 Score=176.75 Aligned_cols=150 Identities=37% Similarity=0.586 Sum_probs=117.9
Q ss_pred CCCCccCccCCcccEEEEEecCCCcEEEeccccCCCceEEEEeeEEechhhHHHHHHHhhhcCCCceEEeeecc-ceEEe
Q 019476 102 SCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINR-DMVID 180 (340)
Q Consensus 102 ~C~Nr~~q~~~~~~l~i~~t~~kG~GlfA~~~I~~G~~I~ey~Geii~~~e~~~r~~~~~~~~~~~~y~~~l~~-~~~ID 180 (340)
.+.|..-.........+..+...|+|+||.+.|++|++|.+|.|+++...++..+.......+ ..+.+..+.. ..++|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~fa~~~i~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d 398 (480)
T COG2940 320 ELLNSNGCKKRREPNVVQESEIKGYGVFALESIKKGEFIIEYHGEIIRRKEAREREENYDLLG-NEFSFGLLEDKDKVRD 398 (480)
T ss_pred chhhhcccccccchhhhhhhcccccceeehhhccchHHHHHhcCcccchHHHHhhhccccccc-cccchhhccccchhhh
Confidence 344443333444556667789999999999999999999999999999988877765552222 2222222332 78899
Q ss_pred ecccCCccccccCCCCCCcceeEEEECCeEEEEEEEcCCCCCCCeEEEecCCCcCCC---------CceeecCCCCCccc
Q 019476 181 ATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGA---------DQDCHCGAAGCRRK 251 (340)
Q Consensus 181 a~~~Gn~aRfINHSC~PN~~~~~~~~~g~~ri~i~A~RdI~~GEELT~dY~~~~~~~---------~~~C~Cgs~~Crg~ 251 (340)
+...|+.+||+||||.||+........|..++.++|+|||.+|||||+||+...+.. ...|.||+..|++.
T Consensus 399 ~~~~g~~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (480)
T COG2940 399 SQKAGDVARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPSLEDNRELKKLLEKRWGCACGEDRCSHT 478 (480)
T ss_pred hhhcccccceeecCCCCCcceecccccccceeeecccccchhhhhhccccccccccchhhhhhhhhhhccccCCCccCCC
Confidence 999999999999999999998776666667899999999999999999999766542 36899999999987
Q ss_pred c
Q 019476 252 L 252 (340)
Q Consensus 252 l 252 (340)
+
T Consensus 479 ~ 479 (480)
T COG2940 479 M 479 (480)
T ss_pred C
Confidence 6
No 10
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.66 E-value=2.4e-16 Score=133.42 Aligned_cols=107 Identities=24% Similarity=0.285 Sum_probs=73.9
Q ss_pred CcEEEeccccCCCceEEEEeeEEechhhHHHH-------------------H-----------------HHhhh---cC-
Q 019476 125 GAGIVADEDIKRGEFVIEYVGEVIDDQTCEER-------------------L-----------------WKMKH---LG- 164 (340)
Q Consensus 125 G~GlfA~~~I~~G~~I~ey~Geii~~~e~~~r-------------------~-----------------~~~~~---~~- 164 (340)
|+||||+++|++|++|++..+.+++....... . ..... ..
T Consensus 1 GrGl~At~dI~~Ge~I~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF00856_consen 1 GRGLFATRDIKAGEVILIPRPAILTPDEVSPQPELLRLQLSKALEEQSRSDFSIQKKQKAEKSERSPQLESLHSISLRSE 80 (162)
T ss_dssp SEEEEESS-B-TTEEEEEESEEEEEHHHHHCHHHHSHHTTCSSSCSHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHTTT
T ss_pred CEEEEECccCCCCCEEEEECcceEEehhhhhcccchhhhhhhhhcccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999887665331 0 00000 00
Q ss_pred ---------------CCceEEeeeccceEEeecccCCccccccCCCCCCcceeEEEECCeEEEEEEEcCCCCCCCeEEEe
Q 019476 165 ---------------ETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYD 229 (340)
Q Consensus 165 ---------------~~~~y~~~l~~~~~IDa~~~Gn~aRfINHSC~PN~~~~~~~~~g~~ri~i~A~RdI~~GEELT~d 229 (340)
...............++.....++.|+||||.|||.+..........+.|+|.|+|++|||||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~is 160 (162)
T PF00856_consen 81 LQFSQAFQWSWFISWTRSDFSSRSFSEDDRDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFIS 160 (162)
T ss_dssp CCTCCHHHHHHHHHHHHHEEEEEEETTEEEEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEE
T ss_pred ccccccccchhhccccceeeeccccccccccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEE
Confidence 00011112223345566677789999999999999997766567789999999999999999999
Q ss_pred cC
Q 019476 230 YQ 231 (340)
Q Consensus 230 Y~ 231 (340)
||
T Consensus 161 YG 162 (162)
T PF00856_consen 161 YG 162 (162)
T ss_dssp ST
T ss_pred EC
Confidence 97
No 11
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=99.48 E-value=7.2e-15 Score=148.03 Aligned_cols=156 Identities=40% Similarity=0.761 Sum_probs=133.9
Q ss_pred cceeeeCC-CCCCCCCCCCCccCccCCcccEEEEEecCCCcEEEeccccCCCceEEEEeeEEechhhHHHHHHHhhhcCC
Q 019476 87 GMLLSSCS-SGCKCGNSCLNKPFQNRPVKKMKLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGE 165 (340)
Q Consensus 87 ~~~~~eC~-~~C~C~~~C~Nr~~q~~~~~~l~i~~t~~kG~GlfA~~~I~~G~~I~ey~Geii~~~e~~~r~~~~~~~~~ 165 (340)
.+..++|. ..|.+...|.|+.+....... +.+ +|..+|.+| +|++++..+...++........
T Consensus 286 ~~~~~~~~p~~~~~~~~~~~~~~sk~~~~e------~~~----~~~~~~~k~------vg~~i~~~e~~~~~~~~~~~~~ 349 (463)
T KOG1081|consen 286 KMLAYEVHPKVCSAEERCHNQQFSKESYPE------PQK----TAKADIRKG------VGEVIDDKECKARLQRVKESDL 349 (463)
T ss_pred Hhhhhhhcccccccccccccchhhhhcccc------cch----hhHHhhhcc------cCcccchhhheeehhhhhccch
Confidence 45566665 569999999999886555433 222 888999998 8999999999988888777777
Q ss_pred CceEEeeeccceEEeecccCCccccccCCCCCCcceeEEEECCeEEEEEEEcCCCCCCCeEEEecCCCcCCCCceeecCC
Q 019476 166 TNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGADQDCHCGA 245 (340)
Q Consensus 166 ~~~y~~~l~~~~~IDa~~~Gn~aRfINHSC~PN~~~~~~~~~g~~ri~i~A~RdI~~GEELT~dY~~~~~~~~~~C~Cgs 245 (340)
..+|+..+..+..||+..+||.+||+||||+||+..++|.+.+..+++++|.+.|++|||||++|.....+....|.||+
T Consensus 350 ~~~~~~~~e~~~~id~~~~~n~sr~~nh~~~~~v~~~k~~~~~~t~~~~~a~~~i~~g~e~t~~~n~~~~~~~~~~~~~~ 429 (463)
T KOG1081|consen 350 VDFYMVFIQKDRIIDAGPKGNYSRFLNHSCQPNVETEKWQVIGDTRVGLFAPRQIEAGEELTFNYNGNCEGNEKRCCCGS 429 (463)
T ss_pred hhhhhhhhhcccccccccccchhhhhcccCCCceeechhheecccccccccccccccchhhhheeeccccCCcceEeecc
Confidence 77776666666699999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred CCCccccCCCCCC
Q 019476 246 AGCRRKLGAKPSK 258 (340)
Q Consensus 246 ~~Crg~l~~~~~~ 258 (340)
.+|.++++.+...
T Consensus 430 e~~~~~~~k~~~~ 442 (463)
T KOG1081|consen 430 ENCTETKGKKKKK 442 (463)
T ss_pred cccccCCcccccc
Confidence 9999999876543
No 12
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=99.24 E-value=4.7e-12 Score=121.01 Aligned_cols=126 Identities=26% Similarity=0.362 Sum_probs=91.0
Q ss_pred cCCCcEEEeccccCCCceEEEEeeEEechhhHHHHHHHhhhcCCCceEEeeeccceEEeecccCCccccccCCCCCCcce
Q 019476 122 EKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEM 201 (340)
Q Consensus 122 ~~kG~GlfA~~~I~~G~~I~ey~Geii~~~e~~~r~~~~~~~~~~~~y~~~l~~~~~IDa~~~Gn~aRfINHSC~PN~~~ 201 (340)
...|--|.|++.+.+|+-|--.+|-|+.-.+++++... ..+..+|-.+.-... --+...-..|+||||.|.|||++
T Consensus 135 ~~~gAkivst~~w~~ndkIe~LvGcIaeLse~eE~~ll--~~g~nDFSvmyStRk--~caqLwLGPaafINHDCrpnCkF 210 (453)
T KOG2589|consen 135 SQNGAKIVSTKSWSRNDKIELLVGCIAELSEAEERSLL--RGGGNDFSVMYSTRK--RCAQLWLGPAAFINHDCRPNCKF 210 (453)
T ss_pred cCCCceEEeeccccCCccHHHhhhhhhhcChhhhHHHH--hccCCceeeeeeccc--chhhheeccHHhhcCCCCCCcee
Confidence 35688999999999999999999999776666666221 222222222211110 01222336789999999999988
Q ss_pred eEEEECCeEEEEEEEcCCCCCCCeEEEecCCCcCCCC-ceeecCCCCCccccCC
Q 019476 202 QKWIIDGETRIGIFATRDIKKGENLTYDYQFVQFGAD-QDCHCGAAGCRRKLGA 254 (340)
Q Consensus 202 ~~~~~~g~~ri~i~A~RdI~~GEELT~dY~~~~~~~~-~~C~Cgs~~Crg~l~~ 254 (340)
. ..|..++.+.++|||++|||||--||..+|+.. ..|.|-++.=+|.-+.
T Consensus 211 v---s~g~~tacvkvlRDIePGeEITcFYgs~fFG~~N~~CeC~TCER~g~gaF 261 (453)
T KOG2589|consen 211 V---STGRDTACVKVLRDIEPGEEITCFYGSGFFGENNEECECVTCERRGTGAF 261 (453)
T ss_pred e---cCCCceeeeehhhcCCCCceeEEeecccccCCCCceeEEeecccccccch
Confidence 3 345678999999999999999999999999874 7899987766665443
No 13
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=99.19 E-value=6.5e-12 Score=88.64 Aligned_cols=49 Identities=43% Similarity=0.944 Sum_probs=44.5
Q ss_pred CCCcccccCCCCCCCCCCCCCCccceeeeCCCCCCCCCCCCCccCccCC
Q 019476 64 DGIFCSCTASPGSSGVCDRDCHCGMLLSSCSSGCKCGNSCLNKPFQNRP 112 (340)
Q Consensus 64 ~~~~C~C~~~~~~~~~C~~~C~c~~~~~eC~~~C~C~~~C~Nr~~q~~~ 112 (340)
+.+.|+|++...+..+|+++|+||++++||++.|+|+..|+||+||++.
T Consensus 2 e~~~C~C~~~~~~~~~CgsdClNR~l~~EC~~~C~~G~~C~NqrFqk~~ 50 (51)
T smart00570 2 DIMTCECKPTDDDEGACGSDCLNRMLLIECSSDCPCGSYCSNQRFQKRQ 50 (51)
T ss_pred CCceeeCccCCCCCCCcchHHHHHHHhhhcCCCCCCCcCccCcccccCc
Confidence 4678999998766789999999999999999999999999999999875
No 14
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=98.61 E-value=1.8e-08 Score=101.99 Aligned_cols=258 Identities=25% Similarity=0.199 Sum_probs=194.4
Q ss_pred CCcCccCCchhhHHHHHHHHHHhhCCCeeEeCCCCCCCCCCCCcEEccceeeccccccccCCCCCCcccccCCC-C-CCC
Q 019476 1 MPAAKKNSDNSRIGHAFNKLLKQIGNPVEFELPDWFIKPKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASP-G-SSG 78 (340)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lp~~~~~~~p~~f~~I~~n~~~~~~~~~~~~~~~~~C~C~~~~-~-~~~ 78 (340)
|+...++++++.+...+.++.....+...++.|.......+ ..|.++++.+..+...+...+++|++..+. . .+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~n---~~i~~~v~~~~~~~~~~~~~~~g~~~~~s~p~~~~~ 77 (463)
T KOG1081|consen 1 MSKFKKHSDRNQIPQHDLKCPSHNQESCSLETPPGSAPLGN---LKITRTVRLGKDLFESDACGGIGGSVSASEPNHVSP 77 (463)
T ss_pred CCcccccccccccchhhcccccccccccccCCCccccccCC---ceeeeeeecCcChhhcccccccccccccCCccccCC
Confidence 78899999999999999999999999999999888877666 889999998887777777788899999873 2 235
Q ss_pred CCCCCCCccceeeeCCCCCCCCCCCCCccCccCCcccEEEEEecCCCcE---EEeccccCCCceEEEEeeEEechh--hH
Q 019476 79 VCDRDCHCGMLLSSCSSGCKCGNSCLNKPFQNRPVKKMKLVQTEKCGAG---IVADEDIKRGEFVIEYVGEVIDDQ--TC 153 (340)
Q Consensus 79 ~C~~~C~c~~~~~eC~~~C~C~~~C~Nr~~q~~~~~~l~i~~t~~kG~G---lfA~~~I~~G~~I~ey~Geii~~~--e~ 153 (340)
.|+..+.+....-+|+..+.++..+.+...+......-.-+..+..+++ ..|.+.+..|++|+.++|+..-.. ..
T Consensus 78 ~~~~~~~~~~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~~~~~~c~~~~~d~~~~~~~~~~~~vw~~vg~~~~~~c~vc 157 (463)
T KOG1081|consen 78 EPGSRRHPKIEPSECFVCFKGGSLVTCKSRIQAPHRKCKPAQLEKCSKRCTDCRAFKKREVGDLVWSKVGEYPWWPCMVC 157 (463)
T ss_pred CCCchhccCCCcchhccccCCCccceeccccccccccCcCccCcccccCCcceeeeccccceeEEeEEcCccccccccee
Confidence 6888888888888887766666655555444444333344456667777 888889999999999999986544 22
Q ss_pred HHHHHHhhhcC-CCceEEeeeccceEEeecccCCccccccCCCCCCcceeEEEECCeEEEEEEEcCCCCCCCe------E
Q 019476 154 EERLWKMKHLG-ETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGEN------L 226 (340)
Q Consensus 154 ~~r~~~~~~~~-~~~~y~~~l~~~~~IDa~~~Gn~aRfINHSC~PN~~~~~~~~~g~~ri~i~A~RdI~~GEE------L 226 (340)
........... ...+|....-.....++...|+..++++|++.|+..+..+......++..++.+.++.+.. .
T Consensus 158 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~s~~~~~~~~~~~r~~~~~~q~~~~~~~~e~k~~~ 237 (463)
T KOG1081|consen 158 HDPLLPKGMKHDHVNFFGCYAWTHEKRVFPYEGQSSKLIPHSKKPASTMSEKIKEAKARFGKLKAQWEAGIKQKELKPEE 237 (463)
T ss_pred cCcccchhhccccceeccchhhHHHhhhhhccchHHHhhhhccccchhhhhhhhcccchhhhcccchhhccchhhccccc
Confidence 33322222222 2333333111223344555899999999999999999998888899999999999888877 7
Q ss_pred EEecCCCcCCCCceeecCCCCCccccCCCCCCCCC
Q 019476 227 TYDYQFVQFGADQDCHCGAAGCRRKLGAKPSKPKI 261 (340)
Q Consensus 227 T~dY~~~~~~~~~~C~Cgs~~Crg~l~~~~~~~~~ 261 (340)
+-+|....+..++.+.+.+..|...+...+.....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 272 (463)
T KOG1081|consen 238 YKRIKVVCPIGDQQIYSAAVSCIKKLLAKPTDEKP 272 (463)
T ss_pred ccccccccCcCcccccchhhhhhhhcccccccccc
Confidence 77777777777788999999999999887766654
No 15
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=98.50 E-value=5.1e-08 Score=78.83 Aligned_cols=84 Identities=18% Similarity=0.268 Sum_probs=42.4
Q ss_pred HhhCCCeeEeCCCCCC-CCCCCCcEEccceeeccccccccCCCCCCcccccCCCCCCCCC--CCCC--------------
Q 019476 22 KQIGNPVEFELPDWFI-KPKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSSGVC--DRDC-------------- 84 (340)
Q Consensus 22 ~~~~~~~~~~lp~~~~-~~~p~~f~~I~~n~~~~~~~~~~~~~~~~~C~C~~~~~~~~~C--~~~C-------------- 84 (340)
+...|..++.+-+..+ .+.|+.|+||.++++..... ........+|+|...+..+..| ...-
T Consensus 3 s~g~e~~pI~~~N~vd~~~~p~~F~Yi~~~~~~~~~~-~~~~~~~~~C~C~~~C~~~~~C~C~~~~~~~~~Y~~~g~l~~ 81 (103)
T PF05033_consen 3 SRGKENVPIPVVNDVDDEPPPPNFEYIPENIYGEGVP-DIDPEFLQGCDCSGDCSNPSNCECLQRNGGIFAYDSNGRLRI 81 (103)
T ss_dssp TCTSSSS-EEEEESSSS--SSTSSEE-SS-EESTTSS--TBGGGTS----SSSSTCTTTSHHHCCTSSS-SB-TTSSBSS
T ss_pred CCCccCCCEEEEeCCCCCCCCCCeEEeeeEEcCCCcc-ccccccCccCccCCCCCCCCCCcCccccCccccccCCCcCcc
Confidence 3444556666544444 44569999999999977643 3344556789998765333333 1100
Q ss_pred CccceeeeCCCCCCCCCCCCCc
Q 019476 85 HCGMLLSSCSSGCKCGNSCLNK 106 (340)
Q Consensus 85 ~c~~~~~eC~~~C~C~~~C~Nr 106 (340)
.-..+++||++.|.|+..|.||
T Consensus 82 ~~~~~i~EC~~~C~C~~~C~NR 103 (103)
T PF05033_consen 82 PDKPPIFECNDNCGCSPSCRNR 103 (103)
T ss_dssp SSTSEEE---TTSSS-TTSTT-
T ss_pred CCCCeEEeCCCCCCCCCCCCCC
Confidence 1123589999999999999997
No 16
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=98.30 E-value=7.9e-07 Score=88.28 Aligned_cols=109 Identities=24% Similarity=0.262 Sum_probs=79.9
Q ss_pred cccEEEEEe--cCCCcEEEeccccCCCceEEEEeeEEechhhHHHHHHHhhhcCCCceEEeee---c-cceEEeec--cc
Q 019476 113 VKKMKLVQT--EKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMKHLGETNFYLCEI---N-RDMVIDAT--YK 184 (340)
Q Consensus 113 ~~~l~i~~t--~~kG~GlfA~~~I~~G~~I~ey~Geii~~~e~~~r~~~~~~~~~~~~y~~~l---~-~~~~IDa~--~~ 184 (340)
...+.|..+ +..|.||++...|++|+-.+-|.|+++.... .....+.|++.+ + .-++||++ ..
T Consensus 27 P~~l~i~~Ssv~~~~lgV~s~~~i~~G~~FGP~~G~~~~~~~---------~~~~n~~y~W~I~~~d~~~~~iDg~d~~~ 97 (396)
T KOG2461|consen 27 PPELRIKPSSVPVTGLGVWSNASILPGTSFGPFEGEIIASID---------SKSANNRYMWEIFSSDNGYEYIDGTDEEH 97 (396)
T ss_pred CCceEeeccccCCccccccccccccCcccccCccCccccccc---------cccccCcceEEEEeCCCceEEeccCChhh
Confidence 346777775 6778999999999999999999999822211 112223344333 2 34789988 56
Q ss_pred CCccccccCCCCC---CcceeEEEECCeEEEEEEEcCCCCCCCeEEEecCCCc
Q 019476 185 GNKSRYINHSCCP---NTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQFVQ 234 (340)
Q Consensus 185 Gn~aRfINHSC~P---N~~~~~~~~~g~~ri~i~A~RdI~~GEELT~dY~~~~ 234 (340)
.|+.||||=+++. |... +.....|.++|+|+|.+||||.++|+.++
T Consensus 98 sNWmRYV~~Ar~~eeQNL~A----~Q~~~~Ifyrt~r~I~p~eELlVWY~~e~ 146 (396)
T KOG2461|consen 98 SNWMRYVNSARSEEEQNLLA----FQIGENIFYRTIRDIRPNEELLVWYGSEY 146 (396)
T ss_pred cceeeeecccCChhhhhHHH----HhccCceEEEecccCCCCCeEEEEeccch
Confidence 8999999977764 6544 33346789999999999999999998654
No 17
>smart00468 PreSET N-terminal to some SET domains. A Cys-rich putative Zn2+-binding domain that occurs N-terminal to some SET domains. Function is unknown. Unpublished.
Probab=97.83 E-value=1.8e-05 Score=63.47 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=39.9
Q ss_pred HHhhCCCeeEeCCCCCC-CCCCCCcEEccceeeccccccccCCCCCCcccccCCCCCC
Q 019476 21 LKQIGNPVEFELPDWFI-KPKAIPYVFIKRNIYLTKRIKRRLEDDGIFCSCTASPGSS 77 (340)
Q Consensus 21 ~~~~~~~~~~~lp~~~~-~~~p~~f~~I~~n~~~~~~~~~~~~~~~~~C~C~~~~~~~ 77 (340)
++...|.+++.+-+..+ .+.|+.|+||+++++..............+|+|..+|...
T Consensus 4 is~G~E~~pI~~vN~vD~~~~p~~F~Yi~~~~~~~gv~~~~~~~~~~gC~C~~~C~~~ 61 (98)
T smart00468 4 ISNGKENVPVPLVNEVDEDPPPPDFEYISEYIYGQGVPIDRSPSPLVGCSCSGDCSSS 61 (98)
T ss_pred ccCCccCCCcceEecCCCCCCCCCcEECcceEcCCCcccccCCCCCCCCcCCCCCCCC
Confidence 45566777777656555 4556999999999987764323455677899999865443
No 18
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=96.84 E-value=0.0012 Score=47.22 Aligned_cols=38 Identities=18% Similarity=0.347 Sum_probs=31.1
Q ss_pred ccceeEeecCCCCccee-eEEeeehhcccceeEEEeeeh
Q 019476 299 CIGKVIRISHPKNESSF-GIIRRFDEYSRKHSMVRVSLL 336 (340)
Q Consensus 299 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 336 (340)
.+|++|++++|.+..|+ |.|..||..+++|+++|.+-+
T Consensus 7 ~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DGt 45 (55)
T PF09465_consen 7 AIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDGT 45 (55)
T ss_dssp -SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS-
T ss_pred cCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcCCC
Confidence 46999999999999998 999999999999999998754
No 19
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains.
Probab=96.34 E-value=0.0019 Score=39.29 Aligned_cols=18 Identities=50% Similarity=1.008 Sum_probs=15.5
Q ss_pred CceeecCCCCCccccCCC
Q 019476 238 DQDCHCGAAGCRRKLGAK 255 (340)
Q Consensus 238 ~~~C~Cgs~~Crg~l~~~ 255 (340)
.+.|+||+.+|||+|+..
T Consensus 2 ~~~C~CGs~~CRG~l~~~ 19 (26)
T smart00508 2 KQPCLCGAPNCRGFLGXX 19 (26)
T ss_pred CeeeeCCCccccceeccc
Confidence 478999999999999654
No 20
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=95.90 E-value=0.019 Score=61.06 Aligned_cols=163 Identities=33% Similarity=0.566 Sum_probs=127.5
Q ss_pred eeeCCCCCCCCCCCCCccCccCCcccE--------EEEEecCCCcEEEeccccCCCceEEEEeeEEechhhHHHHHHHhh
Q 019476 90 LSSCSSGCKCGNSCLNKPFQNRPVKKM--------KLVQTEKCGAGIVADEDIKRGEFVIEYVGEVIDDQTCEERLWKMK 161 (340)
Q Consensus 90 ~~eC~~~C~C~~~C~Nr~~q~~~~~~l--------~i~~t~~kG~GlfA~~~I~~G~~I~ey~Geii~~~e~~~r~~~~~ 161 (340)
++||...|.|...|.|+++|.+...++ .|+++...|||+.+..||+.-+||++|+|...+..-+.+.-..+.
T Consensus 981 f~e~~~hss~~~~e~~~~v~~~~~~~me~~s~~~l~i~~~~~~~~~~~edtD~~~~~~~~~~~~~ppt~~l~~~~r~aqa 1060 (1262)
T KOG1141|consen 981 FFECNDHSSCHRKEYNRVVQNNIKYPMEVSSFNDLQIFKTAQSGWGVREDTDIPQSTFICTYVGAPPTDDLADELRNAQA 1060 (1262)
T ss_pred ceeccccchhcccccchhhhcCCccceeeeecccccccccccccccccccccCCCCcccccccCCCCchhhHHHHhhhhh
Confidence 789999999999999999998776554 456677889999999999999999999999877655433211100
Q ss_pred h-------------------------cCCCceEEeeec------------------------------------------
Q 019476 162 H-------------------------LGETNFYLCEIN------------------------------------------ 174 (340)
Q Consensus 162 ~-------------------------~~~~~~y~~~l~------------------------------------------ 174 (340)
+ .+....|.-.-.
T Consensus 1061 d~~sn~~D~~~~~~l~es~~~~~T~~r~~t~~~~~~~~~d~dd~q~I~k~ve~qd~~~~~~~T~~~~RQ~~~~s~k~~~~ 1140 (1262)
T KOG1141|consen 1061 DQYSNDLDLKDTVELEESREDHETDFRGDTSDYDDEEGSDGDDGQDIMKMVERQDSSESGEETKRLTRQKRKQSKKSGKG 1140 (1262)
T ss_pred ccccCccchhhhhhhhhcccccccccCCCCCCCcccccccCccHHHHHHHhhcccccccccccchhhhhhhhhhhhcccC
Confidence 0 000111100000
Q ss_pred ------------------------------------cceEEeecccCCccccccCCCCCCcceeEEEECCe----EEEEE
Q 019476 175 ------------------------------------RDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGE----TRIGI 214 (340)
Q Consensus 175 ------------------------------------~~~~IDa~~~Gn~aRfINHSC~PN~~~~~~~~~g~----~ri~i 214 (340)
.-++|||...||++||+||||+||+.+|.++++.+ |.++|
T Consensus 1141 ~s~~~~~~ts~~~~~~dkges~~~~~~~~~~y~~~~~~yvIDAk~eGNlGRfLNHSC~PNl~VQnVfvdTHdlrfPwVAF 1220 (1262)
T KOG1141|consen 1141 GSVEKDDTTSRDSMEKDKGESKDEPVFNWDKYFEPFPLYVIDAKQEGNLGRFLNHSCDPNLHVQNVFVDTHDLRFPWVAF 1220 (1262)
T ss_pred ccccccccCccchhhhccCccCcccccchhhccCCCceEEEecccccchhhhhccCCCccceeeeeeeeccccCCchhhh
Confidence 00789999999999999999999999999999864 67999
Q ss_pred EEcCCCCCCCeEEEecCCCcCC---CCceeecCCCCCcccc
Q 019476 215 FATRDIKKGENLTYDYQFVQFG---ADQDCHCGAAGCRRKL 252 (340)
Q Consensus 215 ~A~RdI~~GEELT~dY~~~~~~---~~~~C~Cgs~~Crg~l 252 (340)
||.+-|+||+||||||++..-. +...|+||+.+|||.|
T Consensus 1221 Ft~kyVkAgtELTWDY~Ye~g~v~~keL~C~CGa~~CrgrL 1261 (1262)
T KOG1141|consen 1221 FTRKYVKAGTELTWDYQYEQGQVATKELTCHCGAENCRGRL 1261 (1262)
T ss_pred hhhhhhccCceeeeeccccccccccceEEEecChhhhhccc
Confidence 9999999999999999987643 3478999999999976
No 21
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=92.15 E-value=0.23 Score=49.64 Aligned_cols=43 Identities=35% Similarity=0.616 Sum_probs=30.6
Q ss_pred cccCCCCCCcceeEEEECCeEEEEEEEcCCCCCCC-eEEEecCCCcCC
Q 019476 190 YINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGE-NLTYDYQFVQFG 236 (340)
Q Consensus 190 fINHSC~PN~~~~~~~~~g~~ri~i~A~RdI~~GE-ELT~dY~~~~~~ 236 (340)
++||||.||+. ...++. ...+++..++.+++ ||++.|-...++
T Consensus 208 ~~~hsC~pn~~---~~~~~~-~~~~~~~~~~~~~~~~l~~~y~~~~~~ 251 (482)
T KOG2084|consen 208 LFNHSCFPNIS---VIFDGR-GLALLVPAGIDAGEEELTISYTDPLLS 251 (482)
T ss_pred hcccCCCCCeE---EEECCc-eeEEEeecccCCCCCEEEEeecccccC
Confidence 78999999997 234443 34456666777765 999999866554
No 22
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=84.71 E-value=0.67 Score=47.42 Aligned_cols=41 Identities=22% Similarity=0.273 Sum_probs=30.7
Q ss_pred ccccCCCCCCcceeEEEECCeEEEEEEEcCCCCCCCeEEEecCC
Q 019476 189 RYINHSCCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQF 232 (340)
Q Consensus 189 RfINHSC~PN~~~~~~~~~g~~ri~i~A~RdI~~GEELT~dY~~ 232 (340)
-+.||++.+... .+......+.+++.++|.+||||++.||.
T Consensus 238 D~~NH~~~~~~~---~~~~~d~~~~l~~~~~v~~geevfi~YG~ 278 (472)
T KOG1337|consen 238 DLLNHSPEVIKA---GYNQEDEAVELVAERDVSAGEEVFINYGP 278 (472)
T ss_pred HhhccCchhccc---cccCCCCcEEEEEeeeecCCCeEEEecCC
Confidence 378999999211 11222238889999999999999999985
No 23
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=66.16 E-value=3.7 Score=27.89 Aligned_cols=37 Identities=32% Similarity=0.731 Sum_probs=29.3
Q ss_pred CCcccccCCCCCCCCCC-CCCCccceeeeCCCCCCCCCCCCCcc
Q 019476 65 GIFCSCTASPGSSGVCD-RDCHCGMLLSSCSSGCKCGNSCLNKP 107 (340)
Q Consensus 65 ~~~C~C~~~~~~~~~C~-~~C~c~~~~~eC~~~C~C~~~C~Nr~ 107 (340)
...|.|+.+ .|- ..|.|......|++.|.| ..|.|..
T Consensus 3 ~~gC~Ckks-----~Clk~YC~Cf~~g~~C~~~C~C-~~C~N~~ 40 (42)
T PF03638_consen 3 KKGCNCKKS-----KCLKLYCECFQAGRFCTPNCKC-QNCKNTE 40 (42)
T ss_pred CCCCcccCc-----ChhhhhCHHHHCcCcCCCCccc-CCCCCcC
Confidence 356889874 564 468899999999999999 7888863
No 24
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=61.24 E-value=5.2 Score=28.51 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=11.5
Q ss_pred EEEEcCCCCCCCeEE
Q 019476 213 GIFATRDIKKGENLT 227 (340)
Q Consensus 213 ~i~A~RdI~~GEELT 227 (340)
+++|.|||++|+.|+
T Consensus 3 vvVA~~di~~G~~i~ 17 (63)
T PF08666_consen 3 VVVAARDIPAGTVIT 17 (63)
T ss_dssp EEEESSTB-TT-BEC
T ss_pred EEEEeCccCCCCEEc
Confidence 578999999999995
No 25
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.55 E-value=12 Score=37.57 Aligned_cols=39 Identities=21% Similarity=0.415 Sum_probs=30.2
Q ss_pred ccccccCC---CCCCcceeEEEECCeEEEEEEEcCCCCCCCeEEEecC
Q 019476 187 KSRYINHS---CCPNTEMQKWIIDGETRIGIFATRDIKKGENLTYDYQ 231 (340)
Q Consensus 187 ~aRfINHS---C~PN~~~~~~~~~g~~ri~i~A~RdI~~GEELT~dY~ 231 (340)
++-|+||. |..|..+ +...+-++|.|+|++|+|+.-.||
T Consensus 218 ~ad~lNhd~~k~nanl~y------~~NcL~mva~r~iekgdev~n~dg 259 (466)
T KOG1338|consen 218 IADFLNHDGLKANANLRY------EDNCLEMVADRNIEKGDEVDNSDG 259 (466)
T ss_pred hhhhhccchhhcccceec------cCcceeeeecCCCCCccccccccc
Confidence 56799995 5555533 234678899999999999999997
No 26
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=42.76 E-value=14 Score=30.15 Aligned_cols=17 Identities=59% Similarity=0.860 Sum_probs=12.7
Q ss_pred EEEEEcCCCCCCCeEEE
Q 019476 212 IGIFATRDIKKGENLTY 228 (340)
Q Consensus 212 i~i~A~RdI~~GEELT~ 228 (340)
.+|||.|||++||-|.+
T Consensus 2 rGl~At~dI~~Ge~I~~ 18 (162)
T PF00856_consen 2 RGLFATRDIKAGEVILI 18 (162)
T ss_dssp EEEEESS-B-TTEEEEE
T ss_pred EEEEECccCCCCCEEEE
Confidence 37999999999998873
No 27
>PF02067 Metallothio_5: Metallothionein family 5; InterPro: IPR000966 Metallothioneins (MT) are small proteins that bind heavy metals, such as zinc, copper, cadmium, and nickel. They have a high content of cysteine residues that bind the metal ions through clusters of thiolate bonds [, , ] species, including sea urchins, fungi, insects and cyanobacteria. Class III MTs are atypical polypeptides composed of gamma-glutamylcysteinyl units. This original classification system has been found to be limited, in the sense that it does not allow clear differentiation of patterns of structural similarities, either between or within classes. Consequently, all class I and class I MTs (the proteinaceous sequences) have now been grouped into families of phylogenetically-related and thus alignable sequences. Diptera (Drosophila, family 5) MTs are 40-43 residue proteins that contain 10 conserved cysteines arranged in five Cys-X-Cys groups. In particular, the consensus pattern C-G-x(2)-C-x-C-x(2)-Q-x(5)-C-x-C-x(2)-D-C-x-C has been found to be diagnostic of family 5 MTs. The protein is found primarily in the alimentary canal, and its induction is stimulated by ingestion of cadmium or copper []. Mercury, silver and zinc induce the protein to a lesser extent. Family 5 includes subfamilies: d1, d2. Only one d2 is known until now. Subfamilies hit the same entry.; GO: 0046872 metal ion binding
Probab=42.62 E-value=19 Score=24.28 Aligned_cols=22 Identities=32% Similarity=1.224 Sum_probs=10.5
Q ss_pred CCCCCCccceeeeCCCCCCCCCCC
Q 019476 80 CDRDCHCGMLLSSCSSGCKCGNSC 103 (340)
Q Consensus 80 C~~~C~c~~~~~eC~~~C~C~~~C 103 (340)
|+.+|.|...- |..+|.|+..|
T Consensus 6 Cg~~CkC~~~k--cg~~C~C~~dC 27 (41)
T PF02067_consen 6 CGTNCKCSSQK--CGGNCACNQDC 27 (41)
T ss_pred cCCCCEecCCc--cCCCccCCCCc
Confidence 45555554332 55555555443
No 28
>cd00600 Sm_like The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=37.58 E-value=30 Score=24.60 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=25.0
Q ss_pred ccccceeEeecCCCCcceeeEEeeehhcc
Q 019476 297 QCCIGKVIRISHPKNESSFGIIRRFDEYS 325 (340)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (340)
++++|..+.|....++.+.|++..||+.-
T Consensus 2 ~~~~g~~V~V~l~~g~~~~G~L~~~D~~~ 30 (63)
T cd00600 2 KDLVGKTVRVELKDGRVLEGVLVAFDKYM 30 (63)
T ss_pred hHHCCCEEEEEECCCcEEEEEEEEECCCC
Confidence 46789999999999999889999999763
No 29
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=35.96 E-value=15 Score=39.04 Aligned_cols=29 Identities=28% Similarity=0.624 Sum_probs=24.9
Q ss_pred CCCCCCCccceeeeCCCCCCCCCCCCCcc
Q 019476 79 VCDRDCHCGMLLSSCSSGCKCGNSCLNKP 107 (340)
Q Consensus 79 ~C~~~C~c~~~~~eC~~~C~C~~~C~Nr~ 107 (340)
.|+.+|.|..-..-|..-|.|...|+||.
T Consensus 511 ~c~~~C~C~~n~~~CEk~C~C~~dC~nrF 539 (739)
T KOG1079|consen 511 NCGVGCPCIDNETFCEKFCYCSPDCRNRF 539 (739)
T ss_pred CCCCCCcccccCcchhhcccCCHHHHhcC
Confidence 47889999888888988999998999885
No 30
>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.89 E-value=20 Score=36.45 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=35.4
Q ss_pred CccccccCCCCCCcceeEEEECC--eEEEEEEEcCCCCCCCeEEEecCCC
Q 019476 186 NKSRYINHSCCPNTEMQKWIIDG--ETRIGIFATRDIKKGENLTYDYQFV 233 (340)
Q Consensus 186 n~aRfINHSC~PN~~~~~~~~~g--~~ri~i~A~RdI~~GEELT~dY~~~ 233 (340)
.++.-+.||-.||..+-....-. -..-.++-+|+...|||+|-|+-..
T Consensus 203 efGsrvrHsdePnf~~aPf~fmPq~vaYsimwp~k~~~tgeE~trDfasg 252 (631)
T KOG2155|consen 203 EFGSRVRHSDEPNFRIAPFMFMPQNVAYSIMWPTKPVNTGEEITRDFASG 252 (631)
T ss_pred hhhhhhccCCCCcceeeeheecchhcceeEEeeccCCCCchHHHHHHhhc
Confidence 45566899999998876544321 1345678999999999999887543
No 31
>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism]
Probab=33.87 E-value=12 Score=37.69 Aligned_cols=37 Identities=38% Similarity=0.793 Sum_probs=30.9
Q ss_pred CCCCcccccCCCCCCCCCCC-CCCccceeeeCCCCCCCCCCCCC
Q 019476 63 DDGIFCSCTASPGSSGVCDR-DCHCGMLLSSCSSGCKCGNSCLN 105 (340)
Q Consensus 63 ~~~~~C~C~~~~~~~~~C~~-~C~c~~~~~eC~~~C~C~~~C~N 105 (340)
.+..+|+|+.+ +|-. .|.|.+..+-|+.+|+| ..|.|
T Consensus 215 ~hkkGC~CkkS-----gClKkYCECyQa~vlCS~nCkC-~~CkN 252 (406)
T KOG1171|consen 215 RHKKGCNCKKS-----GCLKKYCECYQAGVLCSSNCKC-QGCKN 252 (406)
T ss_pred hhcCCCCCccc-----cchHHHHHHHhcCCCccccccC-cCCcc
Confidence 35668999985 5744 69999999999999999 68988
No 32
>smart00858 SAF This domain family includes a range of different proteins. Such as antifreeze proteins and flagellar FlgA proteins, and CpaB pilus proteins.
Probab=33.30 E-value=28 Score=24.53 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=14.0
Q ss_pred EEEEcCCCCCCCeEEE
Q 019476 213 GIFATRDIKKGENLTY 228 (340)
Q Consensus 213 ~i~A~RdI~~GEELT~ 228 (340)
.++|.++|.+|+.|+-
T Consensus 3 v~va~~~i~~G~~i~~ 18 (64)
T smart00858 3 VVVAARDLPAGEVITA 18 (64)
T ss_pred EEEEeCccCCCCCcch
Confidence 4689999999999984
No 33
>cd01731 archaeal_Sm1 The archaeal sm1 proteins: The Sm proteins are conserved in all three domains of life and are always associated with U-rich RNA sequences. They function to mediate RNA-RNA interactions and RNA biogenesis. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. Eukaryotic Sm proteins form part of specific small nuclear ribonucleoproteins (snRNPs) that are involved in the processing of pre-mRNAs to mature mRNAs, and are a major component of the eukaryotic spliceosome. Most snRNPs consist of seven Sm proteins (B/B', D1, D2, D3, E, F and G) arranged in a ring on a uridine-rich sequence (Sm site), plus a small nuclear RNA (snRNA) (either U1, U2, U5 or U4/6). Since archaebacteria do not have any splicing apparatus, Sm proteins of archaebacteria may play a more general role. Archaeal Lsm proteins are likely to represent the ancestral Sm domain.
Probab=32.43 E-value=32 Score=25.30 Aligned_cols=32 Identities=9% Similarity=0.174 Sum_probs=26.5
Q ss_pred ccccccceeEeecCCCCcceeeEEeeehhccc
Q 019476 295 CPQCCIGKVIRISHPKNESSFGIIRRFDEYSR 326 (340)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (340)
.+++.++..+.|....++.+.|+++.||++--
T Consensus 4 ~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mN 35 (68)
T cd01731 4 VLKDSLNKPVLVKLKGGKEVRGRLKSYDQHMN 35 (68)
T ss_pred HHHHhcCCEEEEEECCCCEEEEEEEEECCcce
Confidence 35667899999988888888899999998643
No 34
>PRK00737 small nuclear ribonucleoprotein; Provisional
Probab=31.99 E-value=29 Score=25.95 Aligned_cols=34 Identities=6% Similarity=-0.015 Sum_probs=28.2
Q ss_pred CCCccccccceeEeecCCCCcceeeEEeeehhcc
Q 019476 292 RQICPQCCIGKVIRISHPKNESSFGIIRRFDEYS 325 (340)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (340)
+...+.++++.++.|....++.+.|+++.||++-
T Consensus 5 P~~~L~~~~~k~V~V~lk~g~~~~G~L~~~D~~m 38 (72)
T PRK00737 5 PLDVLNNALNSPVLVRLKGGREFRGELQGYDIHM 38 (72)
T ss_pred hHHHHHHhCCCEEEEEECCCCEEEEEEEEEcccc
Confidence 3346788899999999988888889999999853
No 35
>PF01423 LSM: LSM domain ; InterPro: IPR001163 This family is found in Lsm (like-Sm) proteins and in bacterial Lsm-related Hfq proteins. In each case, the domain adopts a core structure consisting of an open beta-barrel with an SH3-like topology. Lsm (like-Sm) proteins have diverse functions, and are thought to be important modulators of RNA biogenesis and function [, ]. The Sm proteins form part of specific small nuclear ribonucleoproteins (snRNPs) that are involved in the processing of pre-mRNAs to mature mRNAs, and are a major component of the eukaryotic spliceosome. Most snRNPs consist of seven Sm proteins (B/B', D1, D2, D3, E, F and G) arranged in a ring on a uridine-rich sequence (Sm site), plus a small nuclear RNA (snRNA) (either U1, U2, U5 or U4/6) []. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker []. In other snRNPs, certain Sm proteins are replaced with different Lsm proteins, such as with U7 snRNPs, in which the D1 and D2 Sm proteins are replaced with U7-specific Lsm10 and Lsm11 proteins, where Lsm11 plays a role in histone U7-specific RNA processing []. Lsm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Lsm proteins. The pleiotropic translational regulator Hfq (host factor Q) is a bacterial Lsm-like protein, which modulates the structure of numerous RNA molecules by binding preferentially to A/U-rich sequences in RNA []. Hfq forms an Lsm-like fold, however, unlike the heptameric Sm proteins, Hfq forms a homo-hexameric ring.; PDB: 1D3B_K 2Y9D_D 2Y9A_D 2Y9C_R 3VRI_C 2Y9B_K 3QUI_D 3M4G_H 3INZ_E 1U1S_C ....
Probab=30.34 E-value=38 Score=24.45 Aligned_cols=30 Identities=27% Similarity=0.426 Sum_probs=25.5
Q ss_pred cccccceeEeecCCCCcceeeEEeeehhcc
Q 019476 296 PQCCIGKVIRISHPKNESSFGIIRRFDEYS 325 (340)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (340)
++.++|..+.|....++.+.|++..||++-
T Consensus 3 L~~~~g~~V~V~l~~g~~~~G~L~~~D~~~ 32 (67)
T PF01423_consen 3 LQKLIGKRVRVELKNGRTYRGTLVSFDQFM 32 (67)
T ss_dssp HHHTTTSEEEEEETTSEEEEEEEEEEETTE
T ss_pred hHHhCCcEEEEEEeCCEEEEEEEEEeechh
Confidence 456889999999988888789999999753
No 36
>cd01730 LSm3 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm3 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=29.74 E-value=39 Score=25.99 Aligned_cols=32 Identities=6% Similarity=0.071 Sum_probs=26.4
Q ss_pred CccccccceeEeecCCCCcceeeEEeeehhcc
Q 019476 294 ICPQCCIGKVIRISHPKNESSFGIIRRFDEYS 325 (340)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (340)
..++.+++..|.|.-..++.+.|+++.||.+-
T Consensus 4 ~~l~~~~~k~V~V~l~~gr~~~G~L~~fD~~m 35 (82)
T cd01730 4 DLIRLSLDERVYVKLRGDRELRGRLHAYDQHL 35 (82)
T ss_pred HHHHHhCCCEEEEEECCCCEEEEEEEEEccce
Confidence 34567788999998888888789999999754
No 37
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=28.52 E-value=92 Score=23.95 Aligned_cols=16 Identities=44% Similarity=0.362 Sum_probs=14.3
Q ss_pred cEEEeccccCCCceEE
Q 019476 126 AGIVADEDIKRGEFVI 141 (340)
Q Consensus 126 ~GlfA~~~I~~G~~I~ 141 (340)
..++|+++|++|+=|.
T Consensus 98 ~~~~a~r~I~~GeEi~ 113 (116)
T smart00317 98 IVIFALRDIKPGEELT 113 (116)
T ss_pred EEEEECCCcCCCCEEe
Confidence 7889999999999774
No 38
>PF14100 PmoA: Methane oxygenase PmoA
Probab=26.14 E-value=95 Score=29.37 Aligned_cols=44 Identities=27% Similarity=0.480 Sum_probs=30.0
Q ss_pred cccCCCCCCcceeEEEECCeEEEEE------EEcCCCCCCCeEEEecCCCc
Q 019476 190 YINHSCCPNTEMQKWIIDGETRIGI------FATRDIKKGENLTYDYQFVQ 234 (340)
Q Consensus 190 fINHSC~PN~~~~~~~~~g~~ri~i------~A~RdI~~GEELT~dY~~~~ 234 (340)
|++|--+||-- ..|.+.+...+++ ..--.|++||.|++.|....
T Consensus 205 ~~dhP~N~~~P-~~W~vR~~g~~~~~p~~~~~~~~~l~~G~~l~~rYr~~v 254 (271)
T PF14100_consen 205 ILDHPSNPNYP-TPWHVRGYGLFGANPAPAFDGPLTLPPGETLTLRYRVVV 254 (271)
T ss_pred EEeCCCCCCCC-cceEEeccCcceecccccccCceecCCCCeEEEEEEEEE
Confidence 77888777643 5566664444333 34467999999999997543
No 39
>cd01720 Sm_D2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D2 heterodimerizes with subunit D1 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing D2, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=25.71 E-value=39 Score=26.53 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=25.3
Q ss_pred Ccccccc--ceeEeecCCCCcceeeEEeeehhc
Q 019476 294 ICPQCCI--GKVIRISHPKNESSFGIIRRFDEY 324 (340)
Q Consensus 294 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 324 (340)
..++.++ ++++.|.-+.++.+.|.++.||++
T Consensus 5 ~~L~~~~~~~~~V~V~lr~~r~~~G~L~~fD~h 37 (87)
T cd01720 5 SLLTQAVKNNTQVLINCRNNKKLLGRVKAFDRH 37 (87)
T ss_pred HHHHHHHcCCCEEEEEEcCCCEEEEEEEEecCc
Confidence 3455665 789999999999988999999975
No 40
>cd01732 LSm5 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm4 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=25.27 E-value=46 Score=25.37 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=26.6
Q ss_pred CCccccccceeEeecCCCCcceeeEEeeehhcc
Q 019476 293 QICPQCCIGKVIRISHPKNESSFGIIRRFDEYS 325 (340)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (340)
...++..+++.+.|....++.+.|.++-||++-
T Consensus 5 ~~~L~~~~~~~V~V~l~~gr~~~G~L~g~D~~m 37 (76)
T cd01732 5 LELIDKCIGSRIWIVMKSDKEFVGTLLGFDDYV 37 (76)
T ss_pred HHHHHHhCCCEEEEEECCCeEEEEEEEEeccce
Confidence 344566778999998888888889999999864
No 41
>cd01727 LSm8 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm8 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=20.76 E-value=85 Score=23.52 Aligned_cols=29 Identities=14% Similarity=0.327 Sum_probs=24.2
Q ss_pred ccccceeEeecCCCCcceeeEEeeehhcc
Q 019476 297 QCCIGKVIRISHPKNESSFGIIRRFDEYS 325 (340)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (340)
.+.++.+++|....++.++|+.+.||++.
T Consensus 5 ~~~l~~~V~V~l~dgr~~~G~L~~~D~~~ 33 (74)
T cd01727 5 EDYLNKTVSVITVDGRVIVGTLKGFDQAT 33 (74)
T ss_pred HHhcCCEEEEEECCCcEEEEEEEEEcccc
Confidence 34678899998888888889999999863
Done!