Query 019478
Match_columns 340
No_of_seqs 128 out of 1591
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 09:47:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019478.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019478hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.7 2.3E-19 4.9E-24 151.7 1.4 272 16-338 93-393 (419)
2 KOG4341 F-box protein containi 99.5 1.7E-16 3.6E-21 140.1 -3.4 249 23-313 74-380 (483)
3 PF12937 F-box-like: F-box-lik 98.8 2.3E-09 5E-14 67.5 3.1 36 21-56 1-36 (47)
4 PF00646 F-box: F-box domain; 98.4 9.4E-08 2E-12 60.3 1.1 37 21-57 3-39 (48)
5 smart00256 FBOX A Receptor for 98.4 5.1E-07 1.1E-11 54.8 3.8 34 24-57 1-34 (41)
6 PLN00113 leucine-rich repeat r 98.0 1.6E-06 3.5E-11 90.1 1.0 143 169-317 115-272 (968)
7 KOG4341 F-box protein containi 98.0 1.4E-07 3.1E-12 84.2 -6.6 188 129-333 138-384 (483)
8 PLN03210 Resistant to P. syrin 97.9 5.8E-06 1.3E-10 87.0 2.8 84 168-252 653-736 (1153)
9 KOG1909 Ran GTPase-activating 97.9 2.3E-06 5E-11 75.0 -0.6 95 102-208 32-131 (382)
10 PLN00113 leucine-rich repeat r 97.7 2.1E-05 4.6E-10 81.8 3.5 151 164-318 420-584 (968)
11 PLN03210 Resistant to P. syrin 97.7 1.3E-05 2.8E-10 84.5 1.6 168 164-334 626-838 (1153)
12 KOG4194 Membrane glycoprotein 97.7 1.1E-05 2.4E-10 75.4 0.7 58 257-315 361-426 (873)
13 PF14580 LRR_9: Leucine-rich r 97.4 5.3E-05 1.1E-09 61.7 1.2 50 286-335 86-143 (175)
14 KOG1947 Leucine rich repeat pr 97.4 4.9E-06 1.1E-10 79.3 -6.1 142 168-314 239-410 (482)
15 KOG1947 Leucine rich repeat pr 97.4 2.7E-05 5.9E-10 74.2 -1.2 141 169-313 185-343 (482)
16 cd00116 LRR_RI Leucine-rich re 97.3 0.00012 2.5E-09 65.9 2.3 146 172-320 108-293 (319)
17 KOG4194 Membrane glycoprotein 97.3 0.00014 3.1E-09 68.3 2.4 160 163-328 116-324 (873)
18 KOG3207 Beta-tubulin folding c 97.3 2.3E-05 5E-10 70.8 -2.8 151 168-321 142-317 (505)
19 KOG2120 SCF ubiquitin ligase, 97.2 2E-05 4.3E-10 68.0 -3.4 125 170-296 232-371 (419)
20 KOG3665 ZYG-1-like serine/thre 97.1 0.00039 8.5E-09 68.7 3.3 61 169-230 145-205 (699)
21 cd00116 LRR_RI Leucine-rich re 97.0 0.0008 1.7E-08 60.5 4.8 149 168-318 47-234 (319)
22 PF07723 LRR_2: Leucine Rich R 97.0 0.001 2.2E-08 35.6 2.9 25 173-197 1-26 (26)
23 PF14580 LRR_9: Leucine-rich r 96.7 0.00026 5.6E-09 57.6 -1.1 123 169-296 16-148 (175)
24 PRK15387 E3 ubiquitin-protein 96.6 0.0023 5.1E-08 63.9 4.2 36 286-321 380-418 (788)
25 KOG3207 Beta-tubulin folding c 96.5 0.00021 4.5E-09 64.9 -3.3 144 168-314 117-280 (505)
26 PRK15387 E3 ubiquitin-protein 95.9 0.0087 1.9E-07 59.9 4.6 72 171-251 241-312 (788)
27 PRK15386 type III secretion pr 95.9 0.011 2.4E-07 54.5 4.7 47 199-249 74-120 (426)
28 KOG1909 Ran GTPase-activating 95.5 0.0079 1.7E-07 53.4 2.2 79 239-317 211-310 (382)
29 KOG3864 Uncharacterized conser 95.4 0.0022 4.8E-08 52.5 -1.6 43 169-211 122-165 (221)
30 KOG0281 Beta-TrCP (transducin 95.2 0.011 2.4E-07 52.0 2.1 36 18-53 72-111 (499)
31 PLN03215 ascorbic acid mannose 95.0 0.021 4.6E-07 52.0 3.3 37 20-56 3-40 (373)
32 KOG3864 Uncharacterized conser 94.8 0.0028 6.1E-08 51.9 -2.7 75 174-249 103-184 (221)
33 KOG2997 F-box protein FBX9 [Ge 94.6 0.029 6.4E-07 49.0 2.9 36 19-54 105-145 (366)
34 KOG1259 Nischarin, modulator o 94.5 0.021 4.6E-07 49.9 1.9 89 240-332 306-410 (490)
35 KOG0444 Cytoskeletal regulator 94.3 0.00037 8.1E-09 66.2 -10.0 18 297-314 331-348 (1255)
36 KOG3665 ZYG-1-like serine/thre 94.2 0.011 2.3E-07 58.8 -0.6 116 197-314 122-259 (699)
37 PF13855 LRR_8: Leucine rich r 94.2 0.042 9.2E-07 36.1 2.5 16 299-314 43-58 (61)
38 PF12799 LRR_4: Leucine Rich r 93.7 0.022 4.7E-07 34.8 0.3 35 172-208 1-35 (44)
39 smart00367 LRR_CC Leucine-rich 93.6 0.043 9.4E-07 29.2 1.3 23 171-193 1-24 (26)
40 COG5238 RNA1 Ran GTPase-activa 93.5 0.024 5.1E-07 48.9 0.3 41 168-208 88-131 (388)
41 PRK15370 E3 ubiquitin-protein 93.2 0.048 1E-06 54.8 2.0 31 288-320 346-382 (754)
42 KOG1259 Nischarin, modulator o 93.1 0.11 2.4E-06 45.5 3.7 21 80-100 83-103 (490)
43 KOG0444 Cytoskeletal regulator 92.6 0.0075 1.6E-07 57.7 -4.3 145 163-315 94-255 (1255)
44 PF13855 LRR_8: Leucine rich r 92.4 0.13 2.8E-06 33.7 2.6 36 257-295 21-56 (61)
45 KOG2982 Uncharacterized conser 92.3 0.094 2E-06 45.9 2.2 127 169-296 68-207 (418)
46 smart00367 LRR_CC Leucine-rich 92.0 0.067 1.5E-06 28.4 0.7 17 196-212 1-17 (26)
47 KOG2123 Uncharacterized conser 91.9 0.0048 1E-07 53.2 -5.8 88 221-311 20-123 (388)
48 PRK15386 type III secretion pr 91.5 0.3 6.5E-06 45.3 4.7 75 188-269 44-120 (426)
49 PRK15370 E3 ubiquitin-protein 91.1 0.074 1.6E-06 53.5 0.5 12 305-316 415-426 (754)
50 KOG4658 Apoptotic ATPase [Sign 90.9 0.41 8.9E-06 49.2 5.5 38 299-336 711-762 (889)
51 PF13516 LRR_6: Leucine Rich r 90.3 0.16 3.5E-06 26.3 1.1 23 171-193 1-23 (24)
52 KOG0617 Ras suppressor protein 88.2 0.011 2.3E-07 47.5 -6.3 40 164-205 48-87 (264)
53 PF12799 LRR_4: Leucine Rich r 87.7 0.23 5.1E-06 30.2 0.7 18 301-318 20-37 (44)
54 KOG2739 Leucine-rich acidic nu 87.0 0.068 1.5E-06 45.7 -2.6 102 194-296 40-151 (260)
55 KOG1644 U2-associated snRNP A' 86.3 1.6 3.4E-05 36.3 4.9 80 169-251 61-150 (233)
56 PF13013 F-box-like_2: F-box-l 85.8 1.2 2.7E-05 33.0 3.8 30 20-49 21-50 (109)
57 KOG0274 Cdc4 and related F-box 85.4 0.39 8.4E-06 46.5 1.2 40 15-54 102-141 (537)
58 COG4886 Leucine-rich repeat (L 84.4 0.4 8.7E-06 44.5 0.8 139 169-315 136-287 (394)
59 KOG4237 Extracellular matrix p 84.3 1.3 2.9E-05 40.4 4.0 87 241-330 274-373 (498)
60 KOG0618 Serine/threonine phosp 80.7 1.1 2.4E-05 45.4 2.2 139 172-322 177-327 (1081)
61 KOG0618 Serine/threonine phosp 78.4 0.1 2.2E-06 52.3 -5.5 37 170-207 357-393 (1081)
62 KOG0617 Ras suppressor protein 78.1 0.44 9.6E-06 38.4 -1.1 100 220-320 56-188 (264)
63 KOG0472 Leucine-rich repeat pr 73.9 0.66 1.4E-05 42.5 -1.2 40 284-324 501-546 (565)
64 KOG2739 Leucine-rich acidic nu 73.1 1 2.3E-05 38.6 -0.2 80 170-249 63-151 (260)
65 smart00368 LRR_RI Leucine rich 72.3 3 6.5E-05 22.4 1.6 23 172-194 2-24 (28)
66 PLN03150 hypothetical protein; 71.3 2.4 5.3E-05 42.1 1.9 67 164-231 434-501 (623)
67 PF09372 PRANC: PRANC domain; 71.0 3.6 7.9E-05 29.8 2.3 25 19-43 70-94 (97)
68 PLN03150 hypothetical protein; 70.9 3.4 7.3E-05 41.1 2.8 53 241-296 442-498 (623)
69 KOG1644 U2-associated snRNP A' 69.7 4.7 0.0001 33.6 2.9 61 168-229 84-149 (233)
70 KOG3926 F-box proteins [Amino 69.7 2.5 5.5E-05 36.4 1.4 53 17-69 198-257 (332)
71 KOG2123 Uncharacterized conser 68.4 0.3 6.6E-06 42.4 -4.4 40 257-296 84-125 (388)
72 KOG2982 Uncharacterized conser 66.6 0.44 9.6E-06 41.9 -3.8 101 171-271 44-156 (418)
73 PF13504 LRR_7: Leucine rich r 61.9 4.4 9.6E-05 18.9 0.8 10 198-207 2-11 (17)
74 KOG0472 Leucine-rich repeat pr 54.0 3.1 6.7E-05 38.4 -0.9 62 256-320 223-290 (565)
75 PF00560 LRR_1: Leucine Rich R 52.8 8.6 0.00019 19.2 1.0 9 199-207 2-10 (22)
76 KOG0531 Protein phosphatase 1, 47.5 5.6 0.00012 37.3 -0.3 36 169-208 115-151 (414)
77 COG4886 Leucine-rich repeat (L 43.7 3.7 8E-05 38.1 -2.1 144 169-320 113-270 (394)
78 KOG1859 Leucine-rich repeat pr 39.7 3 6.5E-05 41.4 -3.3 43 188-231 75-120 (1096)
79 COG5238 RNA1 Ran GTPase-activa 34.2 66 0.0014 28.4 4.1 160 170-337 28-219 (388)
80 KOG4408 Putative Mg2+ and Co2+ 28.9 12 0.00026 33.5 -1.2 37 21-57 8-44 (386)
81 KOG4658 Apoptotic ATPase [Sign 26.1 24 0.00051 36.7 0.2 68 167-234 712-784 (889)
82 KOG3763 mRNA export factor TAP 25.6 32 0.0007 33.2 0.9 63 169-231 215-281 (585)
83 KOG4237 Extracellular matrix p 24.5 31 0.00067 32.0 0.6 59 257-318 270-335 (498)
84 smart00369 LRR_TYP Leucine-ric 22.8 37 0.00081 17.4 0.5 12 172-183 2-13 (26)
85 smart00370 LRR Leucine-rich re 22.8 37 0.00081 17.4 0.5 12 172-183 2-13 (26)
86 PF05725 FNIP: FNIP Repeat; I 22.5 1.3E+02 0.0028 17.9 2.9 25 289-313 13-42 (44)
87 PF08387 FBD: FBD; InterPro: 22.3 1.5E+02 0.0033 18.3 3.3 34 172-205 14-50 (51)
88 COG4829 CatC1 Muconolactone de 21.9 36 0.00078 23.9 0.4 34 24-57 11-46 (98)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.3e-19 Score=151.74 Aligned_cols=272 Identities=19% Similarity=0.289 Sum_probs=178.4
Q ss_pred ccCCcCCCCChHHHHHHHhcCChHHHHHHHHhhhhhhhh------ccccceeEecccccccccCCCchhhHHhHHHHHHH
Q 019478 16 ILVDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYL------WTFTTCLNFSALKMLWNVKKDPATLEEERYNYINW 89 (340)
Q Consensus 16 ~~~d~~s~LPd~il~~Ils~L~~~d~~r~~~vsk~W~~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (340)
.++-.|+.|||||+..||+.|+-+|+.+++.|||||+++ |.. +++..+.+.+ +.
T Consensus 93 npgv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~---lDl~~r~i~p-----------------~~ 152 (419)
T KOG2120|consen 93 NPGVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT---LDLTGRNIHP-----------------DV 152 (419)
T ss_pred CCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee---eccCCCccCh-----------------hH
Confidence 444558999999999999999999999999999999875 554 5555554443 23
Q ss_pred HHHHHhhcCCCceeEEEEEEEeCCCCchhHHHHHHHHHhCCCeEEEEEecCCCCCCCCCCceeeecCCceEeCCCCCCCC
Q 019478 90 VNDVLDSHMGLCINEFRLCFELRNSHGSFITHWIFTALAKKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLS 169 (340)
Q Consensus 90 v~~~l~~~~~~~l~~l~l~~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~L~~~~~~~~ 169 (340)
..+++.+ +|..|++.-.+.. ++. +.. ....+..+++.++++...-.- . .+...+.
T Consensus 153 l~~l~~r----gV~v~Rlar~~~~-~pr-lae-~~~~frsRlq~lDLS~s~it~-----s-------------tl~~iLs 207 (419)
T KOG2120|consen 153 LGRLLSR----GVIVFRLARSFMD-QPR-LAE-HFSPFRSRLQHLDLSNSVITV-----S-------------TLHGILS 207 (419)
T ss_pred HHHHHhC----CeEEEEcchhhhc-Cch-hhh-hhhhhhhhhHHhhcchhheeH-----H-------------HHHHHHH
Confidence 3333322 3666655211110 110 111 112233467777776543210 0 1111235
Q ss_pred CCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE---eccCCCcceEEEEecCCceEE-----EEECC
Q 019478 170 NIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV---VGSSVKLKYLDICYCYFMEEV-----EISAP 241 (340)
Q Consensus 170 ~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i---~~~~~~L~~L~l~~c~~l~~l-----~i~~p 241 (340)
.|.+|+.|+|.+.+++|.-... ++...+|+.|+|+.|.|++.-.. -++|+.|.+|+++.|....+. ..-.+
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise 286 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISE 286 (419)
T ss_pred HHHhhhhccccccccCcHHHHH-HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhch
Confidence 7899999999999998875554 55667899999999999874322 246689999999999855542 22259
Q ss_pred ceeEEEEeccceee-------ecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-----ccc---CCcCCCc
Q 019478 242 SVRSFKYYGPEIKL-------RMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-----FVL---NAVSILN 306 (340)
Q Consensus 242 ~L~~l~l~~~~~~~-------~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-----~~~---~~~~f~~ 306 (340)
+|..|.++|+...+ ....||+|.++.+.-+.. +.......+..++-|++|.+. .|+ .+...+.
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~--l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~ps 364 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM--LKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPS 364 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccc--cCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcc
Confidence 99999999985432 346799999999875521 112233445688999999998 333 3557778
Q ss_pred ceEEEEEcCCchhhhHHHHHHHHhcccccccc
Q 019478 307 LKCFRVVNNFLCFCLILLLFLRKICNSHNVSC 338 (340)
Q Consensus 307 L~~L~l~~~~~~~c~~l~~~~l~~cp~~~~~~ 338 (340)
|.+|++.+.+.. . -..++.+.||++++.|
T Consensus 365 l~yLdv~g~vsd--t-~mel~~e~~~~lkin~ 393 (419)
T KOG2120|consen 365 LVYLDVFGCVSD--T-TMELLKEMLSHLKINC 393 (419)
T ss_pred eEEEEeccccCc--h-HHHHHHHhCccccccc
Confidence 999999763322 1 3456788999987665
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.55 E-value=1.7e-16 Score=140.10 Aligned_cols=249 Identities=17% Similarity=0.204 Sum_probs=153.6
Q ss_pred CCChHHHHHHHhcCChHHHHHHHHhhhhhhhh------ccccceeEecccccccccCCCchhhHHhHHHHHHHHHHHHhh
Q 019478 23 RLPDEILVNIISRLAVREAARTSVLSSRWKYL------WTFTTCLNFSALKMLWNVKKDPATLEEERYNYINWVNDVLDS 96 (340)
Q Consensus 23 ~LPd~il~~Ils~L~~~d~~r~~~vsk~W~~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 96 (340)
.||+|++..|||+|+++.+++++++|+.|..+ |..+..++|....-. .+| ..+.+
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g------------------~VV-~~~~~ 134 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDG------------------GVV-ENMIS 134 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCC------------------cce-ehHhh
Confidence 59999999999999999999999999999864 665543333322100 123 23444
Q ss_pred cCCCceeEEEEEEEeCCCCchhHHHHHHHH-Hh-CCCeEEEEEecCCCCCCCCCCceeeecCCceEeCCCCCCCCCCCCC
Q 019478 97 HMGLCINEFRLCFELRNSHGSFITHWIFTA-LA-KKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLSNIKSL 174 (340)
Q Consensus 97 ~~~~~l~~l~l~~~~~~~~~~~~~~w~~~~-~~-~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~L~~~~~~~~~~~~L 174 (340)
+.|..++.++++.+....+.. +... .. +++++|.+..+.... ......+. ..|++|
T Consensus 135 Rcgg~lk~LSlrG~r~v~~ss-----lrt~~~~CpnIehL~l~gc~~iT----d~s~~sla-------------~~C~~l 192 (483)
T KOG4341|consen 135 RCGGFLKELSLRGCRAVGDSS-----LRTFASNCPNIEHLALYGCKKIT----DSSLLSLA-------------RYCRKL 192 (483)
T ss_pred hhccccccccccccccCCcch-----hhHHhhhCCchhhhhhhcceecc----HHHHHHHH-------------Hhcchh
Confidence 555679999998774443332 2222 22 488888776665332 12222333 678999
Q ss_pred ceEEeeeEE-ecHHHHHHHHhcCccceEEeeeecCCcceEEEe---ccCCCcceEEEEecCCce----------------
Q 019478 175 RSLCLDAVN-VSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV---GSSVKLKYLDICYCYFME---------------- 234 (340)
Q Consensus 175 ~~L~L~~~~-i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~---~~~~~L~~L~l~~c~~l~---------------- 234 (340)
+.|.|..|. +++..++.+...||+|+.|++++|+.++.=.+. ..+..++.+...+|..++
T Consensus 193 ~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~ 272 (483)
T KOG4341|consen 193 RHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILK 272 (483)
T ss_pred hhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhc
Confidence 999998865 788888888999999999999999876542221 233446666555665322
Q ss_pred ----------EEE-----EECCceeEEEEeccce------eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceE
Q 019478 235 ----------EVE-----ISAPSVRSFKYYGPEI------KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETL 293 (340)
Q Consensus 235 ----------~l~-----i~~p~L~~l~l~~~~~------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L 293 (340)
+.. -.+..|+.+.++++.. .-...++++|+.+.+.-+..- -+..++.+-.++++||.|
T Consensus 273 lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~f-sd~~ft~l~rn~~~Le~l 351 (483)
T KOG4341|consen 273 LNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQF-SDRGFTMLGRNCPHLERL 351 (483)
T ss_pred cchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchh-hhhhhhhhhcCChhhhhh
Confidence 111 0134455555554421 112345677777766655221 144566666777777777
Q ss_pred EEE---------cccCCcCCCcceEEEEE
Q 019478 294 ELG---------FVLNAVSILNLKCFRVV 313 (340)
Q Consensus 294 ~l~---------~~~~~~~f~~L~~L~l~ 313 (340)
++. +......++.|+.|.+.
T Consensus 352 ~~e~~~~~~d~tL~sls~~C~~lr~lsls 380 (483)
T KOG4341|consen 352 DLEECGLITDGTLASLSRNCPRLRVLSLS 380 (483)
T ss_pred cccccceehhhhHhhhccCCchhccCChh
Confidence 765 12334566666666665
No 3
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.84 E-value=2.3e-09 Score=67.47 Aligned_cols=36 Identities=44% Similarity=0.718 Sum_probs=31.2
Q ss_pred CCCCChHHHHHHHhcCChHHHHHHHHhhhhhhhhcc
Q 019478 21 ISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWT 56 (340)
Q Consensus 21 ~s~LPd~il~~Ils~L~~~d~~r~~~vsk~W~~lw~ 56 (340)
|+.||+||+.+||++|+.+|+.+++.|||+|+++..
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence 578999999999999999999999999999998653
No 4
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.40 E-value=9.4e-08 Score=60.35 Aligned_cols=37 Identities=43% Similarity=0.666 Sum_probs=31.2
Q ss_pred CCCCChHHHHHHHhcCChHHHHHHHHhhhhhhhhccc
Q 019478 21 ISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTF 57 (340)
Q Consensus 21 ~s~LPd~il~~Ils~L~~~d~~r~~~vsk~W~~lw~~ 57 (340)
++.||+|++.+||++|+..|+++++.|||+|+++...
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 5679999999999999999999999999999987664
No 5
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.37 E-value=5.1e-07 Score=54.77 Aligned_cols=34 Identities=41% Similarity=0.672 Sum_probs=31.6
Q ss_pred CChHHHHHHHhcCChHHHHHHHHhhhhhhhhccc
Q 019478 24 LPDEILVNIISRLAVREAARTSVLSSRWKYLWTF 57 (340)
Q Consensus 24 LPd~il~~Ils~L~~~d~~r~~~vsk~W~~lw~~ 57 (340)
||+|++.+||++++.+|+.+++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999987654
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.01 E-value=1.6e-06 Score=90.07 Aligned_cols=143 Identities=20% Similarity=0.191 Sum_probs=86.9
Q ss_pred CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceE-EEeccCCCcceEEEEecCCceEEE---EECCcee
Q 019478 169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSL-KVVGSSVKLKYLDICYCYFMEEVE---ISAPSVR 244 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~l~---i~~p~L~ 244 (340)
..+++|++|+|.++.+... +. ....++|++|++.++.-...+ ..-..+++|+.|+++++.....+. -..++|+
T Consensus 115 ~~l~~L~~L~Ls~n~l~~~-~p--~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 191 (968)
T PLN00113 115 TTSSSLRYLNLSNNNFTGS-IP--RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE 191 (968)
T ss_pred ccCCCCCEEECcCCccccc-cC--ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCC
Confidence 3677777777776655421 11 134677788887777422111 001234788888888775222221 1357888
Q ss_pred EEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcceEEEEE
Q 019478 245 SFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLKCFRVV 313 (340)
Q Consensus 245 ~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~~L~l~ 313 (340)
+|++.++.. +-.++.+++|+.+.+..+. +...+...+.++++|+.|++. .|..+..+.+|+.|.+.
T Consensus 192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 268 (968)
T PLN00113 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNN---LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY 268 (968)
T ss_pred eeeccCCCCcCcCChHHcCcCCccEEECcCCc---cCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECc
Confidence 888877642 2235677888888776541 111233445688899999887 45566778889999888
Q ss_pred cCCc
Q 019478 314 NNFL 317 (340)
Q Consensus 314 ~~~~ 317 (340)
.+.+
T Consensus 269 ~n~l 272 (968)
T PLN00113 269 QNKL 272 (968)
T ss_pred CCee
Confidence 7533
No 7
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.96 E-value=1.4e-07 Score=84.24 Aligned_cols=188 Identities=16% Similarity=0.214 Sum_probs=125.7
Q ss_pred CCCeEEEEEecCCCCCCCCCCceeeecCCceEeCCCCCCCCCCCCCceEEeeeEE-ecHHHHHHHHhcCccceEEeeeec
Q 019478 129 KKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLSNIKSLRSLCLDAVN-VSGEVLEFFIYSCPLLARLRVVFS 207 (340)
Q Consensus 129 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~L~~~~~~~~~~~~L~~L~L~~~~-i~~~~l~~lls~cp~Le~L~L~~c 207 (340)
..++++.+..+...+ ....-.+ ..++|+.+.|.+.++. ++|..+..+...|++|+.|.+..|
T Consensus 138 g~lk~LSlrG~r~v~----~sslrt~-------------~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c 200 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVG----DSSLRTF-------------ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSC 200 (483)
T ss_pred cccccccccccccCC----cchhhHH-------------hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhccc
Confidence 457778877665443 1112222 2789999999999987 899999999999999999999999
Q ss_pred CCcceEE---EeccCCCcceEEEEecCCceE-----EEEECCceeEEEEeccce------eeecCCCcccceEEEeecc-
Q 019478 208 LDLLSLK---VVGSSVKLKYLDICYCYFMEE-----VEISAPSVRSFKYYGPEI------KLRMENVPQLLDISIGGGY- 272 (340)
Q Consensus 208 ~~~~~l~---i~~~~~~L~~L~l~~c~~l~~-----l~i~~p~L~~l~l~~~~~------~~~~~~~~~L~~l~l~~~~- 272 (340)
..+++.. +...|++|++|+++.|+.+.+ +.-.+.+++.+...|+.. ...-+.++.+.+++++-+.
T Consensus 201 ~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~ 280 (483)
T KOG4341|consen 201 SSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQ 280 (483)
T ss_pred chhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcc
Confidence 9887542 445779999999999996654 222356677776666621 1122344444444422220
Q ss_pred ------------------------CchhhhhhhhhhccCCCcceEEEE---------cccCCcCCCcceEEEEEc-----
Q 019478 273 ------------------------GVRMKHAISPIMSYFHQLETLELG---------FVLNAVSILNLKCFRVVN----- 314 (340)
Q Consensus 273 ------------------------~~~~~~~~~~ll~~~~~L~~L~l~---------~~~~~~~f~~L~~L~l~~----- 314 (340)
.+.-+..++.+.+++++|+.|.+. +.....+++.|+.|.+..
T Consensus 281 lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~ 360 (483)
T KOG4341|consen 281 LTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLIT 360 (483)
T ss_pred ccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceeh
Confidence 011144566777788888888886 233445777888887776
Q ss_pred -----CCchhhhHHHHHHHHhccc
Q 019478 315 -----NFLCFCLILLLFLRKICNS 333 (340)
Q Consensus 315 -----~~~~~c~~l~~~~l~~cp~ 333 (340)
-...+||.++.+.|..|-.
T Consensus 361 d~tL~sls~~C~~lr~lslshce~ 384 (483)
T KOG4341|consen 361 DGTLASLSRNCPRLRVLSLSHCEL 384 (483)
T ss_pred hhhHhhhccCCchhccCChhhhhh
Confidence 2334678888777777764
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.90 E-value=5.8e-06 Score=86.99 Aligned_cols=84 Identities=17% Similarity=0.038 Sum_probs=54.5
Q ss_pred CCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEECCceeEEE
Q 019478 168 LSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFK 247 (340)
Q Consensus 168 ~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~ 247 (340)
+..+++|+.|+|.++..-. .+..-+..+++|+.|++.+|..+..+......++|+.|.+.+|..++.+.-..++|+.|.
T Consensus 653 ls~l~~Le~L~L~~c~~L~-~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~ 731 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLV-ELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLD 731 (1153)
T ss_pred cccCCcccEEEecCCCCcc-ccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeee
Confidence 4567888888887764211 122235567788888888887665443222447888888888876666554456777777
Q ss_pred Eeccc
Q 019478 248 YYGPE 252 (340)
Q Consensus 248 l~~~~ 252 (340)
+.++.
T Consensus 732 L~~n~ 736 (1153)
T PLN03210 732 LDETA 736 (1153)
T ss_pred cCCCc
Confidence 77664
No 9
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.87 E-value=2.3e-06 Score=75.01 Aligned_cols=95 Identities=21% Similarity=0.195 Sum_probs=60.3
Q ss_pred eeEEEEEEEeCCCCchhHHHHHHHHHhC--CCeEEEEEecCCCCCCCCCCceeeecCCceEeCCCCCCCCCCCCCceEEe
Q 019478 102 INEFRLCFELRNSHGSFITHWIFTALAK--KVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLSNIKSLRSLCL 179 (340)
Q Consensus 102 l~~l~l~~~~~~~~~~~~~~w~~~~~~~--~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~L~~~~~~~~~~~~L~~L~L 179 (340)
+..+++. +........+|+....+. .+++..++.-..+. ..-.+|. .| .-+..++.++|+|++|+|
T Consensus 32 ~~~l~ls---gnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR------~~~Ei~e-~L--~~l~~aL~~~~~L~~ldL 99 (382)
T KOG1909|consen 32 LTKLDLS---GNTFGTEAARAIAKVLASKKELREVNLSDMFTGR------LKDEIPE-AL--KMLSKALLGCPKLQKLDL 99 (382)
T ss_pred eEEEecc---CCchhHHHHHHHHHHHhhcccceeeehHhhhcCC------cHHHHHH-HH--HHHHHHHhcCCceeEeec
Confidence 7777764 333455567888887764 55555553221110 1111110 00 001123468899999999
Q ss_pred eeEEecH---HHHHHHHhcCccceEEeeeecC
Q 019478 180 DAVNVSG---EVLEFFIYSCPLLARLRVVFSL 208 (340)
Q Consensus 180 ~~~~i~~---~~l~~lls~cp~Le~L~L~~c~ 208 (340)
+...++. +.+..++++|..|++|.|.+|.
T Consensus 100 SDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 100 SDNAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred cccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 9998875 4688999999999999999995
No 10
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.72 E-value=2.1e-05 Score=81.77 Aligned_cols=151 Identities=17% Similarity=0.188 Sum_probs=93.7
Q ss_pred CCCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEE---EEC
Q 019478 164 SPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVE---ISA 240 (340)
Q Consensus 164 ~~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~---i~~ 240 (340)
.|..+.++++|+.|++.++.+... +......++.|+.|++.+|.-.+.+.-....++|+.|+++++.....+. -..
T Consensus 420 ~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l 498 (968)
T PLN00113 420 LPSEFTKLPLVYFLDISNNNLQGR-INSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSL 498 (968)
T ss_pred CChhHhcCCCCCEEECcCCcccCc-cChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhh
Confidence 445556777888888877665432 2222446788888888887532221111122678888888776322221 124
Q ss_pred CceeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcceE
Q 019478 241 PSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLKC 309 (340)
Q Consensus 241 p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~~ 309 (340)
++|+.|+++++... -.++.+++|+.++|..+ .+.......+.++++|+.|++. +|..+..+.+|++
T Consensus 499 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N---~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 575 (968)
T PLN00113 499 SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN---QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ 575 (968)
T ss_pred hccCEEECcCCcceeeCChHHcCccCCCEEECCCC---cccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCE
Confidence 77888888877432 23566788888887654 1122233445678889999987 5666667788899
Q ss_pred EEEEcCCch
Q 019478 310 FRVVNNFLC 318 (340)
Q Consensus 310 L~l~~~~~~ 318 (340)
|++.++.+.
T Consensus 576 l~ls~N~l~ 584 (968)
T PLN00113 576 VNISHNHLH 584 (968)
T ss_pred EeccCCcce
Confidence 998885444
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.71 E-value=1.3e-05 Score=84.48 Aligned_cols=168 Identities=14% Similarity=0.048 Sum_probs=92.8
Q ss_pred CCCCCCCCCCCceEEeeeEE-ecHHHHHHHHhcCccceEEeeeecCCcceEEEe-ccCCCcceEEEEecCCceEEEE--E
Q 019478 164 SPRTLSNIKSLRSLCLDAVN-VSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV-GSSVKLKYLDICYCYFMEEVEI--S 239 (340)
Q Consensus 164 ~~~~~~~~~~L~~L~L~~~~-i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~-~~~~~L~~L~l~~c~~l~~l~i--~ 239 (340)
++.+...+++|+.|+|.++. +.. +.. ++.+++|++|+|.+|..+..+.-. ..+++|+.|.+.+|..++.+.. .
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~--ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~ 702 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKE--IPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGIN 702 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCc--CCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCC
Confidence 34445667778888876543 211 111 456788888888888765432111 2347888888888887776543 4
Q ss_pred CCceeEEEEecccee-eecCCCcccceEEEeeccCchhhh----------------------h----hhhhhccCCCcce
Q 019478 240 APSVRSFKYYGPEIK-LRMENVPQLLDISIGGGYGVRMKH----------------------A----ISPIMSYFHQLET 292 (340)
Q Consensus 240 ~p~L~~l~l~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~----------------------~----~~~ll~~~~~L~~ 292 (340)
.++|+.|.++|+... .......+|+.+.+....-..+.. . ........++|+.
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred CCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence 578888888877421 111223455555554331000000 0 0001112456777
Q ss_pred EEEE-------cccCCcCCCcceEEEEEcC-Cch------hhhHHHHHHHHhcccc
Q 019478 293 LELG-------FVLNAVSILNLKCFRVVNN-FLC------FCLILLLFLRKICNSH 334 (340)
Q Consensus 293 L~l~-------~~~~~~~f~~L~~L~l~~~-~~~------~c~~l~~~~l~~cp~~ 334 (340)
|.+. +|..+..+++|++|.+.++ .+. .++.|+.+.+..|.++
T Consensus 783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRL 838 (1153)
T ss_pred eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcc
Confidence 7776 4555667788888888652 111 2445566666666654
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.69 E-value=1.1e-05 Score=75.42 Aligned_cols=58 Identities=10% Similarity=0.137 Sum_probs=31.5
Q ss_pred cCCCcccceEEEeec-cCchhhhhhhhhhccCCCcceEEEE------cc-cCCcCCCcceEEEEEcC
Q 019478 257 MENVPQLLDISIGGG-YGVRMKHAISPIMSYFHQLETLELG------FV-LNAVSILNLKCFRVVNN 315 (340)
Q Consensus 257 ~~~~~~L~~l~l~~~-~~~~~~~~~~~ll~~~~~L~~L~l~------~~-~~~~~f~~L~~L~l~~~ 315 (340)
+.++++|+++++.-. -.+.+.+ -...+.+++.|++|.+. ++ ..+..|.+|++|++.+|
T Consensus 361 f~~lssL~~LdLr~N~ls~~IED-aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSNELSWCIED-AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred HHHhhhhhhhcCcCCeEEEEEec-chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCC
Confidence 344555555555433 1122222 12345566777777765 33 34667888888888774
No 13
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.42 E-value=5.3e-05 Score=61.67 Aligned_cols=50 Identities=20% Similarity=0.137 Sum_probs=25.2
Q ss_pred cCCCcceEEEE--------cccCCcCCCcceEEEEEcCCchhhhHHHHHHHHhccccc
Q 019478 286 YFHQLETLELG--------FVLNAVSILNLKCFRVVNNFLCFCLILLLFLRKICNSHN 335 (340)
Q Consensus 286 ~~~~L~~L~l~--------~~~~~~~f~~L~~L~l~~~~~~~c~~l~~~~l~~cp~~~ 335 (340)
.+++|++|.+. ....+..+++|+.|.+.+|.++.-+.-..+.+..||+++
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk 143 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLK 143 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-S
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhh
Confidence 45566666655 113345677777887777766666667777788888764
No 14
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.39 E-value=4.9e-06 Score=79.30 Aligned_cols=142 Identities=20% Similarity=0.272 Sum_probs=84.2
Q ss_pred CCCCCCCceEEeeeEE-ecHHHHHHHHhcCccceEEeeeecCCcceE---EEeccCCCcceEEEEecCCceE-----EEE
Q 019478 168 LSNIKSLRSLCLDAVN-VSGEVLEFFIYSCPLLARLRVVFSLDLLSL---KVVGSSVKLKYLDICYCYFMEE-----VEI 238 (340)
Q Consensus 168 ~~~~~~L~~L~L~~~~-i~~~~l~~lls~cp~Le~L~L~~c~~~~~l---~i~~~~~~L~~L~l~~c~~l~~-----l~i 238 (340)
...+++|+.|++.++. ++|.++..+...||+||+|.+.+|..+++. .+...++.|++|.+.+|..+++ +..
T Consensus 239 ~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~ 318 (482)
T KOG1947|consen 239 LSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLK 318 (482)
T ss_pred hhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHH
Confidence 3567888888888877 888888888888888888888888765532 2334557788888888876432 223
Q ss_pred ECCceeEEEEeccc---------------------eeeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEEc
Q 019478 239 SAPSVRSFKYYGPE---------------------IKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELGF 297 (340)
Q Consensus 239 ~~p~L~~l~l~~~~---------------------~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~~ 297 (340)
.+|+++.+.+.+.. ..+....++.+.++.+.+.. .. +......+.+|++|+ ..+.
T Consensus 319 ~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~-~~~~~~~l~gc~~l~-~~l~- 394 (482)
T KOG1947|consen 319 NCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-IS-DLGLELSLRGCPNLT-ESLE- 394 (482)
T ss_pred hCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-cc-CcchHHHhcCCcccc-hHHH-
Confidence 35666665433221 12234556666666665542 11 222235566777773 2221
Q ss_pred ccCCcCCCcceEEEEEc
Q 019478 298 VLNAVSILNLKCFRVVN 314 (340)
Q Consensus 298 ~~~~~~f~~L~~L~l~~ 314 (340)
.....+..++.|.+..
T Consensus 395 -~~~~~~~~l~~L~l~~ 410 (482)
T KOG1947|consen 395 -LRLCRSDSLRVLNLSD 410 (482)
T ss_pred -HHhccCCccceEeccc
Confidence 1112222266666665
No 15
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.37 E-value=2.7e-05 Score=74.17 Aligned_cols=141 Identities=19% Similarity=0.313 Sum_probs=96.6
Q ss_pred CCCCCCceEEeeeEE-ecHHHHHHHHhcCccceEEeeeec-CCcc-----eEEEeccCCCcceEEEEecCCceEEEE---
Q 019478 169 SNIKSLRSLCLDAVN-VSGEVLEFFIYSCPLLARLRVVFS-LDLL-----SLKVVGSSVKLKYLDICYCYFMEEVEI--- 238 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~-i~~~~l~~lls~cp~Le~L~L~~c-~~~~-----~l~i~~~~~~L~~L~l~~c~~l~~l~i--- 238 (340)
..++.|+.|.+..+. +.+.++..++..||.|++|++.+| .... ...+...+++|++|.+..|..+++..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 458999999999886 888888999999999999999984 3222 123444558999999999986665433
Q ss_pred --ECCceeEEEEeccce------eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEEcccCCcCCCcceEE
Q 019478 239 --SAPSVRSFKYYGPEI------KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELGFVLNAVSILNLKCF 310 (340)
Q Consensus 239 --~~p~L~~l~l~~~~~------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~~~~~~~~f~~L~~L 310 (340)
.+|+|+.+.+.++.. ......+++|++++|.++.... +..+..+..++++++.|.+.... .+.+++.+
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~-d~~l~~~~~~c~~l~~l~~~~~~---~c~~l~~~ 340 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT-DSGLEALLKNCPNLRELKLLSLN---GCPSLTDL 340 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch-HHHHHHHHHhCcchhhhhhhhcC---CCccHHHH
Confidence 368999988666642 1234568888888888774332 34455556778888887654111 14445555
Q ss_pred EEE
Q 019478 311 RVV 313 (340)
Q Consensus 311 ~l~ 313 (340)
.+.
T Consensus 341 ~l~ 343 (482)
T KOG1947|consen 341 SLS 343 (482)
T ss_pred HHH
Confidence 443
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.31 E-value=0.00012 Score=65.95 Aligned_cols=146 Identities=15% Similarity=0.101 Sum_probs=94.2
Q ss_pred CCCceEEeeeEEecHHHHHHH---HhcC-ccceEEeeeecCCcc----eE-EEeccCCCcceEEEEecCCceEEE-----
Q 019478 172 KSLRSLCLDAVNVSGEVLEFF---IYSC-PLLARLRVVFSLDLL----SL-KVVGSSVKLKYLDICYCYFMEEVE----- 237 (340)
Q Consensus 172 ~~L~~L~L~~~~i~~~~l~~l---ls~c-p~Le~L~L~~c~~~~----~l-~i~~~~~~L~~L~l~~c~~l~~l~----- 237 (340)
++|++|++.++.+++.++..+ +..+ ++|++|++.+|.-.. .+ ..-..+.+|+.|.+.+|. +++-.
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~ 186 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALA 186 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHH
Confidence 679999999998887654443 4455 899999999996321 10 011133689999998886 33211
Q ss_pred ---EECCceeEEEEecccee--------eecCCCcccceEEEeeccCchhhhhhhhhhc----cCCCcceEEEE------
Q 019478 238 ---ISAPSVRSFKYYGPEIK--------LRMENVPQLLDISIGGGYGVRMKHAISPIMS----YFHQLETLELG------ 296 (340)
Q Consensus 238 ---i~~p~L~~l~l~~~~~~--------~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~----~~~~L~~L~l~------ 296 (340)
...++|+.|.+.++... ..+..+++|+++.+..+.-. +..+..+.. ..+.|++|.+.
T Consensus 187 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~--~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~ 264 (319)
T cd00116 187 EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT--DAGAAALASALLSPNISLLTLSLSCNDITD 264 (319)
T ss_pred HHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc--hHHHHHHHHHHhccCCCceEEEccCCCCCc
Confidence 12368999998877421 12456788999988765211 112223333 35799999997
Q ss_pred -----cccCCcCCCcceEEEEEcCCchhh
Q 019478 297 -----FVLNAVSILNLKCFRVVNNFLCFC 320 (340)
Q Consensus 297 -----~~~~~~~f~~L~~L~l~~~~~~~c 320 (340)
+...++.+++|++|++.++....-
T Consensus 265 ~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 265 DGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 234566778999999988666644
No 17
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.28 E-value=0.00014 Score=68.28 Aligned_cols=160 Identities=18% Similarity=0.202 Sum_probs=82.2
Q ss_pred CCCCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEec--cCCCcceEEEEecCCceEEEEE-
Q 019478 163 RSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVG--SSVKLKYLDICYCYFMEEVEIS- 239 (340)
Q Consensus 163 ~~~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~--~~~~L~~L~l~~c~~l~~l~i~- 239 (340)
.+|.......+|+.|.|.+..|+.=.-+. ++..|.|++|+|+... ++.+.-++ ...++++|++++.+ ++.++..
T Consensus 116 ~IP~f~~~sghl~~L~L~~N~I~sv~se~-L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~ 192 (873)
T KOG4194|consen 116 RIPRFGHESGHLEKLDLRHNLISSVTSEE-LSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNR-ITTLETGH 192 (873)
T ss_pred hcccccccccceeEEeeeccccccccHHH-HHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeecccc-cccccccc
Confidence 45555466677899999877654321111 5567788888888653 23222221 11567777776654 3332221
Q ss_pred ---------------------------CCceeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCC
Q 019478 240 ---------------------------APSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFH 288 (340)
Q Consensus 240 ---------------------------~p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~ 288 (340)
-|+|++|++..+..+ ..+.+.++|+.+.+.-. .+...-...+-++.
T Consensus 193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN---~I~kL~DG~Fy~l~ 269 (873)
T KOG4194|consen 193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN---DISKLDDGAFYGLE 269 (873)
T ss_pred ccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhc---CcccccCcceeeec
Confidence 244555555444322 22445555555555322 11111112233666
Q ss_pred CcceEEEE------c-ccCCcCCCcceEEEEEcCCch--------hhhHHHHHHH
Q 019478 289 QLETLELG------F-VLNAVSILNLKCFRVVNNFLC--------FCLILLLFLR 328 (340)
Q Consensus 289 ~L~~L~l~------~-~~~~~~f~~L~~L~l~~~~~~--------~c~~l~~~~l 328 (340)
++++|+|. + ...+..+..|++|++++|-++ +|+.|..+.|
T Consensus 270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdL 324 (873)
T KOG4194|consen 270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDL 324 (873)
T ss_pred ccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEec
Confidence 67777766 1 123445666777777774333 5666655544
No 18
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=2.3e-05 Score=70.84 Aligned_cols=151 Identities=14% Similarity=0.066 Sum_probs=102.3
Q ss_pred CCCCCCCceEEeeeEEecH-HHHHHHHhcCccceEEeeeecCCc--ceEEEeccCCCcceEEEEecCCce-----EEEEE
Q 019478 168 LSNIKSLRSLCLDAVNVSG-EVLEFFIYSCPLLARLRVVFSLDL--LSLKVVGSSVKLKYLDICYCYFME-----EVEIS 239 (340)
Q Consensus 168 ~~~~~~L~~L~L~~~~i~~-~~l~~lls~cp~Le~L~L~~c~~~--~~l~i~~~~~~L~~L~l~~c~~l~-----~l~i~ 239 (340)
...||+++.|+|+..-+.+ +.+.+++...|+||.|+|+...-. ..-......++|+.|++..|. +. .+...
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~ 220 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCG-LSWKDVQWILLT 220 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCC-CCHHHHHHHHHh
Confidence 4789999999999887776 458889999999999999976421 111122244899999999998 33 34556
Q ss_pred CCceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE--------cc-----cCCc
Q 019478 240 APSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG--------FV-----LNAV 302 (340)
Q Consensus 240 ~p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~--------~~-----~~~~ 302 (340)
.|+|+.|.+.++.. .........|++++|....- ++..-......+++|+.|.+. .| +...
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l--i~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~ 298 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL--IDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH 298 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc--cccccccccccccchhhhhccccCcchhcCCCccchhhhc
Confidence 79999999887732 12344467788888865411 111111234467788888776 12 2356
Q ss_pred CCCcceEEEEEcCCchhhh
Q 019478 303 SILNLKCFRVVNNFLCFCL 321 (340)
Q Consensus 303 ~f~~L~~L~l~~~~~~~c~ 321 (340)
.|+.|+.|.+..|.+...+
T Consensus 299 ~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 299 TFPKLEYLNISENNIRDWR 317 (505)
T ss_pred ccccceeeecccCcccccc
Confidence 8999999999886654333
No 19
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=2e-05 Score=68.00 Aligned_cols=125 Identities=14% Similarity=0.166 Sum_probs=90.5
Q ss_pred CCCCCceEEeeeEE-ecHHHHHHHHhcCccceEEeeeecCCcce---EEEeccCCCcceEEEEecCC-ce-----EEEEE
Q 019478 170 NIKSLRSLCLDAVN-VSGEVLEFFIYSCPLLARLRVVFSLDLLS---LKVVGSSVKLKYLDICYCYF-ME-----EVEIS 239 (340)
Q Consensus 170 ~~~~L~~L~L~~~~-i~~~~l~~lls~cp~Le~L~L~~c~~~~~---l~i~~~~~~L~~L~l~~c~~-l~-----~l~i~ 239 (340)
.=.+|+.|+|..+. +++.++.-++++|..|.+|+|.+|.-.+. ..+.+-..+|+.|++++|.. +. .+.-.
T Consensus 232 kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~r 311 (419)
T KOG2120|consen 232 KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRR 311 (419)
T ss_pred ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence 44789999999988 99999999999999999999999975442 23333348999999999973 22 12334
Q ss_pred CCceeEEEEecccee-----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE
Q 019478 240 APSVRSFKYYGPEIK-----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG 296 (340)
Q Consensus 240 ~p~L~~l~l~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~ 296 (340)
+|+|..|+++++... ..+-.++.|+++++.=+|+-. ....--+...|.|..|++.
T Consensus 312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVF 371 (419)
T ss_pred CCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEec
Confidence 799999999988431 224456888888887665432 2222235678888888876
No 20
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.07 E-value=0.00039 Score=68.75 Aligned_cols=61 Identities=20% Similarity=0.207 Sum_probs=48.1
Q ss_pred CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEec
Q 019478 169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYC 230 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c 230 (340)
.-||+|++|.+.+..+..+++..+-.++|+|..|+++++. ++.+..-+..++|+.|.+.+-
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L~mrnL 205 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVLSMRNL 205 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHHhccCC
Confidence 6789999999999998888899999999999999999985 555433344466666666543
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.03 E-value=0.0008 Score=60.48 Aligned_cols=149 Identities=16% Similarity=0.125 Sum_probs=85.1
Q ss_pred CCCCCCCceEEeeeEEec--HHHHH---HHHhcCccceEEeeeecCCcceE-----EEeccCCCcceEEEEecCCceE--
Q 019478 168 LSNIKSLRSLCLDAVNVS--GEVLE---FFIYSCPLLARLRVVFSLDLLSL-----KVVGSSVKLKYLDICYCYFMEE-- 235 (340)
Q Consensus 168 ~~~~~~L~~L~L~~~~i~--~~~l~---~lls~cp~Le~L~L~~c~~~~~l-----~i~~~~~~L~~L~l~~c~~l~~-- 235 (340)
....++|+.|.+.+..+. ...+. ..+..+++|+.|++.+|.-.... .+... ++|++|.+.+|. +.+
T Consensus 47 l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~-~~~~~ 124 (319)
T cd00116 47 LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNG-LGDRG 124 (319)
T ss_pred HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCc-cchHH
Confidence 346677888888777665 33333 33445778888888877532110 11111 448888888776 321
Q ss_pred -------EEEECCceeEEEEecccee--------eecCCCcccceEEEeecc-CchhhhhhhhhhccCCCcceEEEE---
Q 019478 236 -------VEISAPSVRSFKYYGPEIK--------LRMENVPQLLDISIGGGY-GVRMKHAISPIMSYFHQLETLELG--- 296 (340)
Q Consensus 236 -------l~i~~p~L~~l~l~~~~~~--------~~~~~~~~L~~l~l~~~~-~~~~~~~~~~ll~~~~~L~~L~l~--- 296 (340)
+.-..++|+.+.+.++... ..+..+.+|+++.+..+. .......+...+..+++|+.|++.
T Consensus 125 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 125 LRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred HHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence 1111278888888877422 123445678887776552 111111222334455688888887
Q ss_pred --------cccCCcCCCcceEEEEEcCCch
Q 019478 297 --------FVLNAVSILNLKCFRVVNNFLC 318 (340)
Q Consensus 297 --------~~~~~~~f~~L~~L~l~~~~~~ 318 (340)
+...+..+++|++|++.++.+.
T Consensus 205 i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 205 LTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred cChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 2234566778888888875443
No 22
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=96.97 E-value=0.001 Score=35.61 Aligned_cols=25 Identities=48% Similarity=0.745 Sum_probs=22.3
Q ss_pred CCceEEeeeEEecHH-HHHHHHhcCc
Q 019478 173 SLRSLCLDAVNVSGE-VLEFFIYSCP 197 (340)
Q Consensus 173 ~L~~L~L~~~~i~~~-~l~~lls~cp 197 (340)
+||+|+|..+.+.++ .++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999998765 7999999998
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.71 E-value=0.00026 Score=57.64 Aligned_cols=123 Identities=19% Similarity=0.213 Sum_probs=40.0
Q ss_pred CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEE--E--ECCcee
Q 019478 169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVE--I--SAPSVR 244 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~--i--~~p~L~ 244 (340)
.+.-++++|+|.+..|+. ++.+-..+..|+.|+++++. ++.+.--...++|+.|.+++.. ++++. + ..|+|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccccc--ccchhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCC-CCccccchHHhCCcCC
Confidence 345578999998888754 44433457889999999884 2222111123788888888775 55552 2 258888
Q ss_pred EEEEecccee-----eecCCCcccceEEEeecc-CchhhhhhhhhhccCCCcceEEEE
Q 019478 245 SFKYYGPEIK-----LRMENVPQLLDISIGGGY-GVRMKHAISPIMSYFHQLETLELG 296 (340)
Q Consensus 245 ~l~l~~~~~~-----~~~~~~~~L~~l~l~~~~-~~~~~~~~~~ll~~~~~L~~L~l~ 296 (340)
.|.+++.... ..++.+++|+.+.+.... ... ...-.-++..+|+|+.|+-.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 8888766431 234567778887776551 111 11122345678888887765
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.56 E-value=0.0023 Score=63.90 Aligned_cols=36 Identities=22% Similarity=0.031 Sum_probs=21.0
Q ss_pred cCCCcceEEEE---cccCCcCCCcceEEEEEcCCchhhh
Q 019478 286 YFHQLETLELG---FVLNAVSILNLKCFRVVNNFLCFCL 321 (340)
Q Consensus 286 ~~~~L~~L~l~---~~~~~~~f~~L~~L~l~~~~~~~c~ 321 (340)
..++|+.|++. +........+|+.|++.++.+...|
T Consensus 380 l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssIP 418 (788)
T PRK15387 380 LPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLP 418 (788)
T ss_pred cccccceEEecCCcccCCCCcccCCCEEEccCCcCCCCC
Confidence 34567777776 2222223457777777776555544
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.00021 Score=64.86 Aligned_cols=144 Identities=17% Similarity=0.208 Sum_probs=94.0
Q ss_pred CCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecC---CcceEEEeccCCCcceEEEEecCCc----eEEEEEC
Q 019478 168 LSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSL---DLLSLKVVGSSVKLKYLDICYCYFM----EEVEISA 240 (340)
Q Consensus 168 ~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~---~~~~l~i~~~~~~L~~L~l~~c~~l----~~l~i~~ 240 (340)
..++.+|+...|.+..+.+.+.+..+..||++++|+|+.-= +..-..|....++|+.|+++..... ...+...
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 46889999999999998887777788899999999999752 2222355566789999999865411 1233356
Q ss_pred CceeEEEEeccce-----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cc--cCCcCCCcc
Q 019478 241 PSVRSFKYYGPEI-----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FV--LNAVSILNL 307 (340)
Q Consensus 241 p~L~~l~l~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~--~~~~~f~~L 307 (340)
++|+.|.+++|.. ......+|+|+.+.+...........- ..-+..|++|+|. .+ -....|++|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~---~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS---TKILQTLQELDLSNNNLIDFDQGYKVGTLPGL 273 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch---hhhhhHHhhccccCCcccccccccccccccch
Confidence 7888888887743 223566788888877654211000000 1134457777776 12 235577777
Q ss_pred eEEEEEc
Q 019478 308 KCFRVVN 314 (340)
Q Consensus 308 ~~L~l~~ 314 (340)
+.|.+..
T Consensus 274 ~~Lnls~ 280 (505)
T KOG3207|consen 274 NQLNLSS 280 (505)
T ss_pred hhhhccc
Confidence 7777766
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.95 E-value=0.0087 Score=59.94 Aligned_cols=72 Identities=17% Similarity=0.130 Sum_probs=33.5
Q ss_pred CCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEECCceeEEEEec
Q 019478 171 IKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKYYG 250 (340)
Q Consensus 171 ~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~~ 250 (340)
.++|++|+|.++.++. +. ...++|+.|++.++. +.. ++....+|+.|.+.++. ++.+....|+|+.|++++
T Consensus 241 p~~Lk~LdLs~N~Lts--LP---~lp~sL~~L~Ls~N~-L~~--Lp~lp~~L~~L~Ls~N~-Lt~LP~~p~~L~~LdLS~ 311 (788)
T PRK15387 241 PPELRTLEVSGNQLTS--LP---VLPPGLLELSIFSNP-LTH--LPALPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSD 311 (788)
T ss_pred CCCCcEEEecCCccCc--cc---CcccccceeeccCCc-hhh--hhhchhhcCEEECcCCc-cccccccccccceeECCC
Confidence 4666777666655432 11 113455666655543 211 11111345555555543 444433345566665555
Q ss_pred c
Q 019478 251 P 251 (340)
Q Consensus 251 ~ 251 (340)
+
T Consensus 312 N 312 (788)
T PRK15387 312 N 312 (788)
T ss_pred C
Confidence 4
No 27
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.90 E-value=0.011 Score=54.50 Aligned_cols=47 Identities=23% Similarity=0.316 Sum_probs=19.4
Q ss_pred ceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEECCceeEEEEe
Q 019478 199 LARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKYY 249 (340)
Q Consensus 199 Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~ 249 (340)
|++|.+.+|..+..+.-. -.++|+.|.+.+|..+..+ .++|++|++.
T Consensus 74 LtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L~sL---P~sLe~L~L~ 120 (426)
T PRK15386 74 LTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEISGL---PESVRSLEIK 120 (426)
T ss_pred CcEEEccCCCCcccCCch-hhhhhhheEccCccccccc---ccccceEEeC
Confidence 555555555443221100 0134555555555433322 2344444443
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.54 E-value=0.0079 Score=53.36 Aligned_cols=79 Identities=15% Similarity=0.201 Sum_probs=52.1
Q ss_pred ECCceeEEEEeccce--------eeecCCCcccceEEEeec--cCchhhhhhhhhhccCCCcceEEEE-----------c
Q 019478 239 SAPSVRSFKYYGPEI--------KLRMENVPQLLDISIGGG--YGVRMKHAISPIMSYFHQLETLELG-----------F 297 (340)
Q Consensus 239 ~~p~L~~l~l~~~~~--------~~~~~~~~~L~~l~l~~~--~~~~~~~~~~~ll~~~~~L~~L~l~-----------~ 297 (340)
++|+|+.|++.++.. .-.+..+++|+++++..+ ........+..+-.+.|+|+.|.+. +
T Consensus 211 ~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~l 290 (382)
T KOG1909|consen 211 HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALAL 290 (382)
T ss_pred hCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHH
Confidence 367788887776632 112456788889988887 2222233444455578999999987 2
Q ss_pred ccCCcCCCcceEEEEEcCCc
Q 019478 298 VLNAVSILNLKCFRVVNNFL 317 (340)
Q Consensus 298 ~~~~~~f~~L~~L~l~~~~~ 317 (340)
...+..-+.|+.|++.+|-.
T Consensus 291 a~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 291 AACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHhcchhhHHhcCCcccc
Confidence 23344578999999988655
No 29
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.37 E-value=0.0022 Score=52.52 Aligned_cols=43 Identities=21% Similarity=0.201 Sum_probs=23.3
Q ss_pred CCCCCCceEEeeeEE-ecHHHHHHHHhcCccceEEeeeecCCcc
Q 019478 169 SNIKSLRSLCLDAVN-VSGEVLEFFIYSCPLLARLRVVFSLDLL 211 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~-i~~~~l~~lls~cp~Le~L~L~~c~~~~ 211 (340)
.+++.++.|++.+|. ++|..++.+-.-.|+|++|+|++|+.++
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence 344555555555554 5555555555555555555555555544
No 30
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.22 E-value=0.011 Score=52.02 Aligned_cols=36 Identities=33% Similarity=0.554 Sum_probs=33.8
Q ss_pred CCcCCCCC----hHHHHHHHhcCChHHHHHHHHhhhhhhh
Q 019478 18 VDWISRLP----DEILVNIISRLAVREAARTSVLSSRWKY 53 (340)
Q Consensus 18 ~d~~s~LP----d~il~~Ils~L~~~d~~r~~~vsk~W~~ 53 (340)
.|-+..|| |+|-..||+||+..++.++-.|||+|++
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r 111 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKR 111 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence 47778999 9999999999999999999999999986
No 31
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=95.02 E-value=0.021 Score=51.97 Aligned_cols=37 Identities=30% Similarity=0.352 Sum_probs=33.3
Q ss_pred cCCCCChHHHHHHHhcCC-hHHHHHHHHhhhhhhhhcc
Q 019478 20 WISRLPDEILVNIISRLA-VREAARTSVLSSRWKYLWT 56 (340)
Q Consensus 20 ~~s~LPd~il~~Ils~L~-~~d~~r~~~vsk~W~~lw~ 56 (340)
.|+.||+|+|..|..+|+ .-|++|.+.||+.||....
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 388999999999999998 5799999999999998644
No 32
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.75 E-value=0.0028 Score=51.94 Aligned_cols=75 Identities=15% Similarity=0.202 Sum_probs=53.2
Q ss_pred CceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceE---EEeccCCCcceEEEEecCCceEEEEEC----CceeEE
Q 019478 174 LRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSL---KVVGSSVKLKYLDICYCYFMEEVEISA----PSVRSF 246 (340)
Q Consensus 174 L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l---~i~~~~~~L~~L~l~~c~~l~~l~i~~----p~L~~l 246 (340)
++.++-+++.|..+++++ +.+++.++.|.+.+|..+++. .+....++|+.|.+++|+.+++-.+.+ +||+.|
T Consensus 103 IeaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 344455566677888888 678999999999999887643 223344899999999998777655443 555555
Q ss_pred EEe
Q 019478 247 KYY 249 (340)
Q Consensus 247 ~l~ 249 (340)
.++
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 544
No 33
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.58 E-value=0.029 Score=49.05 Aligned_cols=36 Identities=31% Similarity=0.377 Sum_probs=30.5
Q ss_pred CcCCCCChHHHHHHHh-----cCChHHHHHHHHhhhhhhhh
Q 019478 19 DWISRLPDEILVNIIS-----RLAVREAARTSVLSSRWKYL 54 (340)
Q Consensus 19 d~~s~LPd~il~~Ils-----~L~~~d~~r~~~vsk~W~~l 54 (340)
+.|+.||||||..||. .++.+++.++|+|||.|+..
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~ 145 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC 145 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence 3467899999999996 45679999999999999853
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.53 E-value=0.021 Score=49.86 Aligned_cols=89 Identities=16% Similarity=0.128 Sum_probs=51.0
Q ss_pred CCceeEEEEeccce--eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-----cccCCcCCCcceEEEE
Q 019478 240 APSVRSFKYYGPEI--KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-----FVLNAVSILNLKCFRV 312 (340)
Q Consensus 240 ~p~L~~l~l~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-----~~~~~~~f~~L~~L~l 312 (340)
+|.++.|.++-+.. .-.++..++|+++.+....-.. +..+-..+-|+++|.|. ....+.++..|..|++
T Consensus 306 ~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~----~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl 381 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAE----CVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDL 381 (490)
T ss_pred ccceeEEeccccceeeehhhhhcccceEeecccchhHh----hhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccc
Confidence 58888887775533 2236677888888887652111 11222355667777766 1223445566666666
Q ss_pred Ec---------CCchhhhHHHHHHHHhcc
Q 019478 313 VN---------NFLCFCLILLLFLRKICN 332 (340)
Q Consensus 313 ~~---------~~~~~c~~l~~~~l~~cp 332 (340)
.+ ..++..|-|+.+.|..-|
T Consensus 382 ~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 382 SSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred cccchhhHHHhcccccccHHHHHhhcCCC
Confidence 66 344455666666665555
No 35
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=94.25 E-value=0.00037 Score=66.18 Aligned_cols=18 Identities=6% Similarity=0.067 Sum_probs=10.6
Q ss_pred cccCCcCCCcceEEEEEc
Q 019478 297 FVLNAVSILNLKCFRVVN 314 (340)
Q Consensus 297 ~~~~~~~f~~L~~L~l~~ 314 (340)
+|+.+..|..|+.|.+..
T Consensus 331 VPEglcRC~kL~kL~L~~ 348 (1255)
T KOG0444|consen 331 VPEGLCRCVKLQKLKLDH 348 (1255)
T ss_pred CchhhhhhHHHHHhcccc
Confidence 555555666666665555
No 36
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.19 E-value=0.011 Score=58.80 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=61.4
Q ss_pred ccceEEeeeecCCcce---EEEeccCCCcceEEEEecCCce----EEEEECCceeEEEEeccceee--ecCCCcccceEE
Q 019478 197 PLLARLRVVFSLDLLS---LKVVGSSVKLKYLDICYCYFME----EVEISAPSVRSFKYYGPEIKL--RMENVPQLLDIS 267 (340)
Q Consensus 197 p~Le~L~L~~c~~~~~---l~i~~~~~~L~~L~l~~c~~l~----~l~i~~p~L~~l~l~~~~~~~--~~~~~~~L~~l~ 267 (340)
.+|+.|++.+-..+.. ..+..-.|+|++|.+.+-.... .+-..=|||++|+++|+.+.- -++...+|+.+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 4567777766432221 1233344777777776533111 111223778888887776532 234455555555
Q ss_pred EeeccCchhhhhhhhhhccCCCcceEEEE-------------cccCCcCCCcceEEEEEc
Q 019478 268 IGGGYGVRMKHAISPIMSYFHQLETLELG-------------FVLNAVSILNLKCFRVVN 314 (340)
Q Consensus 268 l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------------~~~~~~~f~~L~~L~l~~ 314 (340)
+....-.. ...+ .=+.++.+|+.|+++ ..+.-..+|+|+.|+..+
T Consensus 202 mrnLe~e~-~~~l-~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 202 MRNLEFES-YQDL-IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred ccCCCCCc-hhhH-HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 54331000 0011 113368888888887 234445677888888876
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=94.17 E-value=0.042 Score=36.07 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=8.4
Q ss_pred cCCcCCCcceEEEEEc
Q 019478 299 LNAVSILNLKCFRVVN 314 (340)
Q Consensus 299 ~~~~~f~~L~~L~l~~ 314 (340)
..+..+++|++|++.+
T Consensus 43 ~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 43 DAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TTTTTSTTESEEEETS
T ss_pred HHHcCCCCCCEEeCcC
Confidence 3445555555555543
No 38
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=93.71 E-value=0.022 Score=34.83 Aligned_cols=35 Identities=23% Similarity=0.211 Sum_probs=26.8
Q ss_pred CCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecC
Q 019478 172 KSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSL 208 (340)
Q Consensus 172 ~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~ 208 (340)
++|++|++.+..+.+ +...++++++|+.|++.++.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence 578999999888764 55557889999999999985
No 39
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.55 E-value=0.043 Score=29.19 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=14.2
Q ss_pred CCCCceEEeeeEE-ecHHHHHHHH
Q 019478 171 IKSLRSLCLDAVN-VSGEVLEFFI 193 (340)
Q Consensus 171 ~~~L~~L~L~~~~-i~~~~l~~ll 193 (340)
||+|+.|+|.+|. ++|.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 4566666666665 6666666544
No 40
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.50 E-value=0.024 Score=48.90 Aligned_cols=41 Identities=22% Similarity=0.123 Sum_probs=33.9
Q ss_pred CCCCCCCceEEeeeEEecH---HHHHHHHhcCccceEEeeeecC
Q 019478 168 LSNIKSLRSLCLDAVNVSG---EVLEFFIYSCPLLARLRVVFSL 208 (340)
Q Consensus 168 ~~~~~~L~~L~L~~~~i~~---~~l~~lls~cp~Le~L~L~~c~ 208 (340)
+..||.|+..+|+...|+. +.+..++++...|+.|.+++|.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 4688999999998887764 4577888888999999999985
No 41
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=93.21 E-value=0.048 Score=54.81 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=16.7
Q ss_pred CCcceEEEE------cccCCcCCCcceEEEEEcCCchhh
Q 019478 288 HQLETLELG------FVLNAVSILNLKCFRVVNNFLCFC 320 (340)
Q Consensus 288 ~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~~~~c 320 (340)
++|+.|++. +|..+ .++|++|++.++.+...
T Consensus 346 ~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~L 382 (754)
T PRK15370 346 PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNL 382 (754)
T ss_pred CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCC
Confidence 466666665 22222 24677777776544433
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=93.06 E-value=0.11 Score=45.49 Aligned_cols=21 Identities=14% Similarity=0.107 Sum_probs=14.1
Q ss_pred HHhHHHHHHHHHHHHhhcCCC
Q 019478 80 EEERYNYINWVNDVLDSHMGL 100 (340)
Q Consensus 80 ~~~~~~~~~~v~~~l~~~~~~ 100 (340)
+.++....-+.+..+..+++.
T Consensus 83 e~r~~~leiylq~ll~~f~~~ 103 (490)
T KOG1259|consen 83 EQRREQLEIYLQELLIYFRTE 103 (490)
T ss_pred HHHHHHHHHHHHHHHHHcccc
Confidence 455666667777777777664
No 43
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=92.57 E-value=0.0075 Score=57.70 Aligned_cols=145 Identities=13% Similarity=0.202 Sum_probs=80.4
Q ss_pred CCCCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEec----cCCCcceEEEEecCCceEEEE
Q 019478 163 RSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVG----SSVKLKYLDICYCYFMEEVEI 238 (340)
Q Consensus 163 ~~~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~----~~~~L~~L~l~~c~~l~~l~i 238 (340)
.+|.....+..|+.|+|++..+.+- ..=+...+++-.|+|++.. +.. |+. ....|-.|++++.+ ++.+.-
T Consensus 94 GiP~diF~l~dLt~lDLShNqL~Ev--P~~LE~AKn~iVLNLS~N~-Iet--IPn~lfinLtDLLfLDLS~Nr-Le~LPP 167 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQLREV--PTNLEYAKNSIVLNLSYNN-IET--IPNSLFINLTDLLFLDLSNNR-LEMLPP 167 (1255)
T ss_pred CCCchhcccccceeeecchhhhhhc--chhhhhhcCcEEEEcccCc-ccc--CCchHHHhhHhHhhhccccch-hhhcCH
Confidence 5666667788888888887765431 1114456677778887763 221 111 11344455555544 443322
Q ss_pred E---CCceeEEEEeccce-eeecCCCcccceE---EEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCC
Q 019478 239 S---APSVRSFKYYGPEI-KLRMENVPQLLDI---SIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSIL 305 (340)
Q Consensus 239 ~---~p~L~~l~l~~~~~-~~~~~~~~~L~~l---~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~ 305 (340)
. -.+|++|.++++.. .+.+...|+++.+ .+... ... ..++..-+.++.||..++++ +|++..+..
T Consensus 168 Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~T-qRT-l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~ 245 (1255)
T KOG0444|consen 168 QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNT-QRT-LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLR 245 (1255)
T ss_pred HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccc-cch-hhcCCCchhhhhhhhhccccccCCCcchHHHhhhh
Confidence 2 24567777777754 3334444544444 33322 111 12233335567777777777 677777778
Q ss_pred cceEEEEEcC
Q 019478 306 NLKCFRVVNN 315 (340)
Q Consensus 306 ~L~~L~l~~~ 315 (340)
+|+.|++++|
T Consensus 246 ~LrrLNLS~N 255 (1255)
T KOG0444|consen 246 NLRRLNLSGN 255 (1255)
T ss_pred hhheeccCcC
Confidence 8888888774
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=92.37 E-value=0.13 Score=33.68 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=16.0
Q ss_pred cCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEE
Q 019478 257 MENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLEL 295 (340)
Q Consensus 257 ~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l 295 (340)
+.++++|+.+++... .+...-...+.++++|+.|++
T Consensus 21 f~~l~~L~~L~l~~N---~l~~i~~~~f~~l~~L~~L~l 56 (61)
T PF13855_consen 21 FSNLPNLETLDLSNN---NLTSIPPDAFSNLPNLRYLDL 56 (61)
T ss_dssp TTTGTTESEEEETSS---SESEEETTTTTTSTTESEEEE
T ss_pred HcCCCCCCEeEccCC---ccCccCHHHHcCCCCCCEEeC
Confidence 344555555555422 111112233445556665554
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.28 E-value=0.094 Score=45.92 Aligned_cols=127 Identities=12% Similarity=0.083 Sum_probs=76.0
Q ss_pred CCCCCCceEEeeeEEecHH-HHHHHHhcCccceEEeeeecCCcceE-EEeccCCCcceEEEEecCC----ceEEEEECCc
Q 019478 169 SNIKSLRSLCLDAVNVSGE-VLEFFIYSCPLLARLRVVFSLDLLSL-KVVGSSVKLKYLDICYCYF----MEEVEISAPS 242 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~i~~~-~l~~lls~cp~Le~L~L~~c~~~~~l-~i~~~~~~L~~L~l~~c~~----l~~l~i~~p~ 242 (340)
..+..++.|+|.+..++|- ++.+|+.+.|+|+.|+|+...--..+ ..+.+..+|+.|.+.+..- ..+.--+-|.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 4678899999999998884 69999999999999999876422211 2233447889998887651 1222223466
Q ss_pred eeEEEEecccee-eec-----CCC-cccceEEEeeccCchhhhhhhhhhccCCCcceEEEE
Q 019478 243 VRSFKYYGPEIK-LRM-----ENV-PQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG 296 (340)
Q Consensus 243 L~~l~l~~~~~~-~~~-----~~~-~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~ 296 (340)
++.|.++.+..+ +.. +.. +.+..++..-+ ....+....++.+-+||++.+.++
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c-~~~~w~~~~~l~r~Fpnv~sv~v~ 207 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPC-LEQLWLNKNKLSRIFPNVNSVFVC 207 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCc-HHHHHHHHHhHHhhcccchheeee
Confidence 666666655321 111 111 12222222211 111233455667788888888887
No 46
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=92.00 E-value=0.067 Score=28.43 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=14.1
Q ss_pred CccceEEeeeecCCcce
Q 019478 196 CPLLARLRVVFSLDLLS 212 (340)
Q Consensus 196 cp~Le~L~L~~c~~~~~ 212 (340)
||+|++|+|.+|..+++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 78888999998887765
No 47
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.94 E-value=0.0048 Score=53.17 Aligned_cols=88 Identities=16% Similarity=0.154 Sum_probs=50.4
Q ss_pred CcceEEEEecCCceEEEEE--CCceeEEEEecccee--eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE
Q 019478 221 KLKYLDICYCYFMEEVEIS--APSVRSFKYYGPEIK--LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG 296 (340)
Q Consensus 221 ~L~~L~l~~c~~l~~l~i~--~p~L~~l~l~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~ 296 (340)
+.+.|+.++|. +.+|.|. .|.|+.|.++-+.+. -.+..|..|++++|.-+.-.+ ..-..++.++|+|+.|.|.
T Consensus 20 ~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~s--ldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 20 NVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIES--LDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HhhhhcccCCC-ccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhccccc--HHHHHHHhcCchhhhHhhc
Confidence 34555555554 5544443 466666666544332 235678888888775441111 1223567888888888887
Q ss_pred -cc-----------cCCcCCCcceEEE
Q 019478 297 -FV-----------LNAVSILNLKCFR 311 (340)
Q Consensus 297 -~~-----------~~~~~f~~L~~L~ 311 (340)
-| ..+-.++||++|+
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 11 1244677777774
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=91.52 E-value=0.3 Score=45.30 Aligned_cols=75 Identities=15% Similarity=0.084 Sum_probs=51.7
Q ss_pred HHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEE-EECCceeEEEEeccc-eeeecCCCcccce
Q 019478 188 VLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVE-ISAPSVRSFKYYGPE-IKLRMENVPQLLD 265 (340)
Q Consensus 188 ~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~-i~~p~L~~l~l~~~~-~~~~~~~~~~L~~ 265 (340)
.+.. +..|+.++.|++.+| .+..+- .-..+|+.|.+.+|..++.+. .-.++|++|.+.++. .. .-.++|+.
T Consensus 44 a~~r-~~~~~~l~~L~Is~c-~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~---sLP~sLe~ 116 (426)
T PRK15386 44 ITPQ-IEEARASGRLYIKDC-DIESLP--VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS---GLPESVRS 116 (426)
T ss_pred HHHH-HHHhcCCCEEEeCCC-CCcccC--CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccc---ccccccce
Confidence 3444 566899999999999 455432 222689999999999876654 225799999999872 22 22355666
Q ss_pred EEEe
Q 019478 266 ISIG 269 (340)
Q Consensus 266 l~l~ 269 (340)
+.+.
T Consensus 117 L~L~ 120 (426)
T PRK15386 117 LEIK 120 (426)
T ss_pred EEeC
Confidence 6664
No 49
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=91.11 E-value=0.074 Score=53.51 Aligned_cols=12 Identities=17% Similarity=-0.200 Sum_probs=6.1
Q ss_pred CcceEEEEEcCC
Q 019478 305 LNLKCFRVVNNF 316 (340)
Q Consensus 305 ~~L~~L~l~~~~ 316 (340)
+++..|.+.+|.
T Consensus 415 ~~l~~L~L~~Np 426 (754)
T PRK15370 415 PQPTRIIVEYNP 426 (754)
T ss_pred CCccEEEeeCCC
Confidence 445555555543
No 50
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=90.92 E-value=0.41 Score=49.21 Aligned_cols=38 Identities=13% Similarity=-0.030 Sum_probs=25.4
Q ss_pred cCCcCCCcceEEEEEcCCch--------------hhhHHHHHHHHhcccccc
Q 019478 299 LNAVSILNLKCFRVVNNFLC--------------FCLILLLFLRKICNSHNV 336 (340)
Q Consensus 299 ~~~~~f~~L~~L~l~~~~~~--------------~c~~l~~~~l~~cp~~~~ 336 (340)
.....+.+|+.|.|.+.... +.|++..+....|..+..
T Consensus 711 ~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~ 762 (889)
T KOG4658|consen 711 SSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD 762 (889)
T ss_pred cccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc
Confidence 34667888999988882221 156777777778876543
No 51
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.29 E-value=0.16 Score=26.26 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=16.3
Q ss_pred CCCCceEEeeeEEecHHHHHHHH
Q 019478 171 IKSLRSLCLDAVNVSGEVLEFFI 193 (340)
Q Consensus 171 ~~~L~~L~L~~~~i~~~~l~~ll 193 (340)
+++|++|+|.++.|+++++..+.
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 47889999998889888877653
No 52
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=88.21 E-value=0.011 Score=47.46 Aligned_cols=40 Identities=30% Similarity=0.342 Sum_probs=23.9
Q ss_pred CCCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeee
Q 019478 164 SPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVV 205 (340)
Q Consensus 164 ~~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~ 205 (340)
+|.....+.+|++|++++..+.+ +.--++..|.|+.|++.
T Consensus 48 vppnia~l~nlevln~~nnqie~--lp~~issl~klr~lnvg 87 (264)
T KOG0617|consen 48 VPPNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVG 87 (264)
T ss_pred cCCcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecc
Confidence 34445677777777777665533 22225666666666655
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=87.69 E-value=0.23 Score=30.20 Aligned_cols=18 Identities=22% Similarity=0.325 Sum_probs=9.1
Q ss_pred CcCCCcceEEEEEcCCch
Q 019478 301 AVSILNLKCFRVVNNFLC 318 (340)
Q Consensus 301 ~~~f~~L~~L~l~~~~~~ 318 (340)
+..+++|+.|.+.++.+.
T Consensus 20 l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 20 LSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp GTTCTTSSEEEETSSCCS
T ss_pred HhCCCCCCEEEecCCCCC
Confidence 445555555555554433
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=87.02 E-value=0.068 Score=45.70 Aligned_cols=102 Identities=17% Similarity=0.114 Sum_probs=51.2
Q ss_pred hcCccceEEeeeecCCcceEEEeccCCCcceEEEEecC-----CceEEEEECCceeEEEEeccceee--ec---CCCccc
Q 019478 194 YSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCY-----FMEEVEISAPSVRSFKYYGPEIKL--RM---ENVPQL 263 (340)
Q Consensus 194 s~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~-----~l~~l~i~~p~L~~l~l~~~~~~~--~~---~~~~~L 263 (340)
...-.|+.|.+.+|.-.+....+. +++|+.|.++... .+.-+...+|+|+++.++|+..+. .+ ....+|
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~-Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPK-LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccccchhhhhhhccceeecccCCC-cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 334455555566664433334443 2677777776552 122233346888888888876542 11 223334
Q ss_pred ceEEEeeccCchhhhhhhhhhccCCCcceEEEE
Q 019478 264 LDISIGGGYGVRMKHAISPIMSYFHQLETLELG 296 (340)
Q Consensus 264 ~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~ 296 (340)
..+.+..+..-..++.-.+.+.-+++|+.|+-.
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 444444332112233333445556666666654
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=86.28 E-value=1.6 Score=36.28 Aligned_cols=80 Identities=21% Similarity=0.250 Sum_probs=50.2
Q ss_pred CCCCCCceEEeeeEEecH--HHHHHHHhcCccceEEeeeecC--CcceEEEeccCCCcceEEEEecCC-----ceEEEEE
Q 019478 169 SNIKSLRSLCLDAVNVSG--EVLEFFIYSCPLLARLRVVFSL--DLLSLKVVGSSVKLKYLDICYCYF-----MEEVEIS 239 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~i~~--~~l~~lls~cp~Le~L~L~~c~--~~~~l~i~~~~~~L~~L~l~~c~~-----l~~l~i~ 239 (340)
..++.|..|.|.+.+|++ +.+.. ..|+|..|.+.+.. .+.++.--+.+++|++|++-+.+- .....+.
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~---~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~ 137 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDT---FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLY 137 (233)
T ss_pred CCccccceEEecCCcceeeccchhh---hccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEE
Confidence 467888888888877653 33443 35888888888754 233333334557888888876551 1122233
Q ss_pred -CCceeEEEEecc
Q 019478 240 -APSVRSFKYYGP 251 (340)
Q Consensus 240 -~p~L~~l~l~~~ 251 (340)
-|+|+.|++.+.
T Consensus 138 klp~l~~LDF~kV 150 (233)
T KOG1644|consen 138 KLPSLRTLDFQKV 150 (233)
T ss_pred ecCcceEeehhhh
Confidence 588888887754
No 56
>PF13013 F-box-like_2: F-box-like domain
Probab=85.80 E-value=1.2 Score=33.00 Aligned_cols=30 Identities=20% Similarity=-0.007 Sum_probs=26.5
Q ss_pred cCCCCChHHHHHHHhcCChHHHHHHHHhhh
Q 019478 20 WISRLPDEILVNIISRLAVREAARTSVLSS 49 (340)
Q Consensus 20 ~~s~LPd~il~~Ils~L~~~d~~r~~~vsk 49 (340)
.+.+||+||+..|+.+-...++......|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 478899999999999999999888887776
No 57
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=85.39 E-value=0.39 Score=46.47 Aligned_cols=40 Identities=28% Similarity=0.396 Sum_probs=36.2
Q ss_pred cccCCcCCCCChHHHHHHHhcCChHHHHHHHHhhhhhhhh
Q 019478 15 EILVDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYL 54 (340)
Q Consensus 15 ~~~~d~~s~LPd~il~~Ils~L~~~d~~r~~~vsk~W~~l 54 (340)
....|-++.||-++..+||++|+.+++..+++||+.|+.+
T Consensus 102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 3456888999999999999999999999999999999864
No 58
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=84.40 E-value=0.4 Score=44.53 Aligned_cols=139 Identities=18% Similarity=0.198 Sum_probs=86.5
Q ss_pred CCC-CCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEE--CCc-ee
Q 019478 169 SNI-KSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEIS--APS-VR 244 (340)
Q Consensus 169 ~~~-~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~--~p~-L~ 244 (340)
... ++|+.|++.+..+.+ +..-+..+|.|+.|++.++.-...-......+.|+.|.+++.. +.++.-. .++ |+
T Consensus 136 ~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~ 212 (394)
T COG4886 136 GLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALE 212 (394)
T ss_pred ccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhh
Confidence 444 389999998877644 2123678999999999999632211111133788889888875 6665542 344 88
Q ss_pred EEEEeccc-e--eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEcC
Q 019478 245 SFKYYGPE-I--KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNN 315 (340)
Q Consensus 245 ~l~l~~~~-~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~ 315 (340)
.+.+.+.. . ...+.....+..+.+..... ..+...+..+++++.|.+. ++. +..+.+|+.|.+.++
T Consensus 213 ~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~----~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 213 ELDLSNNSIIELLSSLSNLKNLSGLELSNNKL----EDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred hhhhcCCcceecchhhhhcccccccccCCcee----eeccchhccccccceecccccccccccc-ccccCccCEEeccCc
Confidence 88887772 2 22233444444444221100 0113556688889999988 333 778889999999873
No 59
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=84.29 E-value=1.3 Score=40.44 Aligned_cols=87 Identities=20% Similarity=0.301 Sum_probs=60.8
Q ss_pred CceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcceE
Q 019478 241 PSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLKC 309 (340)
Q Consensus 241 p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~~ 309 (340)
|+|++++++++.. .-.+++...+++++++-. .+...-...+.++.+|+.|+|. .|..+.....|..
T Consensus 274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N---~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~ 350 (498)
T KOG4237|consen 274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN---KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLST 350 (498)
T ss_pred ccceEeccCCCccchhhhhhhcchhhhhhhhcCcc---hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeee
Confidence 8899999988743 345788899999988643 3344455668899999999998 3455666667888
Q ss_pred EEEEcC-Cchhh-hHHHHHHHHh
Q 019478 310 FRVVNN-FLCFC-LILLLFLRKI 330 (340)
Q Consensus 310 L~l~~~-~~~~c-~~l~~~~l~~ 330 (340)
|.+..| ..+.| ..|..-+++.
T Consensus 351 l~l~~Np~~CnC~l~wl~~Wlr~ 373 (498)
T KOG4237|consen 351 LNLLSNPFNCNCRLAWLGEWLRK 373 (498)
T ss_pred eehccCcccCccchHHHHHHHhh
Confidence 877664 45556 3355555554
No 60
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=80.67 E-value=1.1 Score=45.39 Aligned_cols=139 Identities=13% Similarity=0.052 Sum_probs=75.2
Q ss_pred CCCce-EEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEE--CCceeEEEE
Q 019478 172 KSLRS-LCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEIS--APSVRSFKY 248 (340)
Q Consensus 172 ~~L~~-L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~--~p~L~~l~l 248 (340)
.+|+. |+|.+..+. ...++.|++|+.|....- ++..+.+.. ++|+.|..++|+ +..+... ..+|+++++
T Consensus 177 ~~l~~~ldLr~N~~~----~~dls~~~~l~~l~c~rn-~ls~l~~~g--~~l~~L~a~~n~-l~~~~~~p~p~nl~~~di 248 (1081)
T KOG0618|consen 177 YNLTHQLDLRYNEME----VLDLSNLANLEVLHCERN-QLSELEISG--PSLTALYADHNP-LTTLDVHPVPLNLQYLDI 248 (1081)
T ss_pred hhhheeeecccchhh----hhhhhhccchhhhhhhhc-ccceEEecC--cchheeeeccCc-ceeeccccccccceeeec
Confidence 44444 666665543 122677888887765433 456666666 888999998887 4322221 256666666
Q ss_pred eccce---eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEcCCchh
Q 019478 249 YGPEI---KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNNFLCF 319 (340)
Q Consensus 249 ~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~~~~ 319 (340)
+-... +--++.+++|+.+.+... .+.... .=.....+|+.|.+. +|.....+..|++|++..+.+..
T Consensus 249 s~n~l~~lp~wi~~~~nle~l~~n~N---~l~~lp-~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~ 324 (1081)
T KOG0618|consen 249 SHNNLSNLPEWIGACANLEALNANHN---RLVALP-LRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPS 324 (1081)
T ss_pred chhhhhcchHHHHhcccceEecccch---hHHhhH-HHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccc
Confidence 54321 222456677777766443 110000 001122334444433 45555566677777777665555
Q ss_pred hhH
Q 019478 320 CLI 322 (340)
Q Consensus 320 c~~ 322 (340)
.|.
T Consensus 325 lp~ 327 (1081)
T KOG0618|consen 325 LPD 327 (1081)
T ss_pred cch
Confidence 554
No 61
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=78.39 E-value=0.1 Score=52.33 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=19.0
Q ss_pred CCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeec
Q 019478 170 NIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFS 207 (340)
Q Consensus 170 ~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c 207 (340)
.++.|+.|.+-+..++|+.+.. +.+.++|+.|+|.+-
T Consensus 357 ~~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyN 393 (1081)
T KOG0618|consen 357 NHAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYN 393 (1081)
T ss_pred hhHHHHHHHHhcCcccccchhh-hccccceeeeeeccc
Confidence 3445555555555555544332 445555555555554
No 62
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=78.06 E-value=0.44 Score=38.44 Aligned_cols=100 Identities=16% Similarity=0.177 Sum_probs=58.1
Q ss_pred CCcceEEEEecCCceEEEEE---CCceeEEEEeccc---eeeecCCCcccceEEEeeccC-------chh----------
Q 019478 220 VKLKYLDICYCYFMEEVEIS---APSVRSFKYYGPE---IKLRMENVPQLLDISIGGGYG-------VRM---------- 276 (340)
Q Consensus 220 ~~L~~L~l~~c~~l~~l~i~---~p~L~~l~l~~~~---~~~~~~~~~~L~~l~l~~~~~-------~~~---------- 276 (340)
.+|+.|++++.. ++++... .|+|+.|.++... .+--++.+|.|+.+.+++..- +.+
T Consensus 56 ~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl 134 (264)
T KOG0617|consen 56 KNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYL 134 (264)
T ss_pred hhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHh
Confidence 567777777654 5555433 4778888777552 233478889999998887621 110
Q ss_pred -hhhh---hhhhccCCCcceEEEE------cccCCcCCCcceEEEEEcCCchhh
Q 019478 277 -KHAI---SPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNNFLCFC 320 (340)
Q Consensus 277 -~~~~---~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~~~~c 320 (340)
+..+ ..=...+.+|+.|.+. .|.....+.+|++|+|.++-+.-.
T Consensus 135 ~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 135 GDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred cCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeec
Confidence 0011 1113345556666655 556666677777777776544443
No 63
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=73.85 E-value=0.66 Score=42.52 Aligned_cols=40 Identities=18% Similarity=0.105 Sum_probs=32.7
Q ss_pred hccCCCcceEEEE------cccCCcCCCcceEEEEEcCCchhhhHHH
Q 019478 284 MSYFHQLETLELG------FVLNAVSILNLKCFRVVNNFLCFCLILL 324 (340)
Q Consensus 284 l~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~~~~c~~l~ 324 (340)
+.++.+|..|++. +|..+.++.||++|++.++... -|.-+
T Consensus 501 l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr-~Pr~~ 546 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR-QPRHQ 546 (565)
T ss_pred hhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC-CCHHH
Confidence 5688899999998 7888999999999999997665 44433
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=73.07 E-value=1 Score=38.65 Aligned_cols=80 Identities=23% Similarity=0.230 Sum_probs=50.7
Q ss_pred CCCCCceEEeeeEEec-HHHHHHHHhcCccceEEeeeecCC--cceEEEeccCCCcceEEEEecCCce------EEEEEC
Q 019478 170 NIKSLRSLCLDAVNVS-GEVLEFFIYSCPLLARLRVVFSLD--LLSLKVVGSSVKLKYLDICYCYFME------EVEISA 240 (340)
Q Consensus 170 ~~~~L~~L~L~~~~i~-~~~l~~lls~cp~Le~L~L~~c~~--~~~l~i~~~~~~L~~L~l~~c~~l~------~l~i~~ 240 (340)
.+|+|++|.++..... ..++..++..||+|++|+++.-.. +.++.-.....+|..|.+.+|+... .+-...
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 5789999999877432 335777788899999999998752 2222222233567778888887322 111224
Q ss_pred CceeEEEEe
Q 019478 241 PSVRSFKYY 249 (340)
Q Consensus 241 p~L~~l~l~ 249 (340)
|+|++++-+
T Consensus 143 ~~L~~LD~~ 151 (260)
T KOG2739|consen 143 PSLKYLDGC 151 (260)
T ss_pred hhhcccccc
Confidence 666666543
No 65
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=72.30 E-value=3 Score=22.41 Aligned_cols=23 Identities=26% Similarity=0.177 Sum_probs=19.1
Q ss_pred CCCceEEeeeEEecHHHHHHHHh
Q 019478 172 KSLRSLCLDAVNVSGEVLEFFIY 194 (340)
Q Consensus 172 ~~L~~L~L~~~~i~~~~l~~lls 194 (340)
++|++|+|.+..+++++...+..
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 57999999999999988776543
No 66
>PLN03150 hypothetical protein; Provisional
Probab=71.26 E-value=2.4 Score=42.06 Aligned_cols=67 Identities=19% Similarity=0.247 Sum_probs=40.3
Q ss_pred CCCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceE-EEeccCCCcceEEEEecC
Q 019478 164 SPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSL-KVVGSSVKLKYLDICYCY 231 (340)
Q Consensus 164 ~~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l-~i~~~~~~L~~L~l~~c~ 231 (340)
+|..+..+++|+.|+|.+..+... +...+..+++|+.|+|.++.-...+ ..-..+++|+.|.+.++.
T Consensus 434 ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 434 IPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred CCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence 444556778888888877665421 2333567788888888877422211 001233677777777765
No 67
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=70.96 E-value=3.6 Score=29.78 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.7
Q ss_pred CcCCCCChHHHHHHHhcCChHHHHH
Q 019478 19 DWISRLPDEILVNIISRLAVREAAR 43 (340)
Q Consensus 19 d~~s~LPd~il~~Ils~L~~~d~~r 43 (340)
..|..||.||...||++|+-.|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 6799999999999999999998754
No 68
>PLN03150 hypothetical protein; Provisional
Probab=70.89 E-value=3.4 Score=41.09 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=28.7
Q ss_pred CceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE
Q 019478 241 PSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG 296 (340)
Q Consensus 241 p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~ 296 (340)
++|+.|+++++.. +-.++.+++|+.+++..+ .+...+...+..+++|+.|+|.
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N---~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN---SFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC---CCCCCCchHHhcCCCCCEEECc
Confidence 6677777665532 113456666666666543 1111233345566677777765
No 69
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=69.71 E-value=4.7 Score=33.59 Aligned_cols=61 Identities=23% Similarity=0.205 Sum_probs=42.2
Q ss_pred CCCCCCCceEEeeeEEecH-HHHHHHHhcCccceEEeeeecCCcc----eEEEeccCCCcceEEEEe
Q 019478 168 LSNIKSLRSLCLDAVNVSG-EVLEFFIYSCPLLARLRVVFSLDLL----SLKVVGSSVKLKYLDICY 229 (340)
Q Consensus 168 ~~~~~~L~~L~L~~~~i~~-~~l~~lls~cp~Le~L~L~~c~~~~----~l~i~~~~~~L~~L~l~~ 229 (340)
...+|+|++|.|.+.++.+ .+++. +..||.|++|.+.+-.-.. .+.+-...++|+.|+..+
T Consensus 84 ~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 84 DTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 3567999999999887654 33454 6689999999999864322 344444447777777654
No 70
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=69.70 E-value=2.5 Score=36.39 Aligned_cols=53 Identities=19% Similarity=0.259 Sum_probs=39.9
Q ss_pred cCCcCCCCChHHHHHHHhcCC-hHHHHHHHHhhhhh------hhhccccceeEecccccc
Q 019478 17 LVDWISRLPDEILVNIISRLA-VREAARTSVLSSRW------KYLWTFTTCLNFSALKML 69 (340)
Q Consensus 17 ~~d~~s~LPd~il~~Ils~L~-~~d~~r~~~vsk~W------~~lw~~~~~l~~~~~~~~ 69 (340)
++-.+.+||.+++..|+.+++ -+|+..++.|-..- +++|+.+-.+.|....+.
T Consensus 198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~ 257 (332)
T KOG3926|consen 198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIH 257 (332)
T ss_pred CCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 455689999999999999999 68999999875444 356776655666665443
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.42 E-value=0.3 Score=42.45 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=20.6
Q ss_pred cCCCcccceEEEeecc--CchhhhhhhhhhccCCCcceEEEE
Q 019478 257 MENVPQLLDISIGGGY--GVRMKHAISPIMSYFHQLETLELG 296 (340)
Q Consensus 257 ~~~~~~L~~l~l~~~~--~~~~~~~~~~ll~~~~~L~~L~l~ 296 (340)
+.++|+|+.+-|.-+. +..-...-...++.+|||++|+=.
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 4556666666554431 111111223556778888887743
No 72
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.63 E-value=0.44 Score=41.88 Aligned_cols=101 Identities=13% Similarity=0.223 Sum_probs=68.2
Q ss_pred CCCCceEEeeeEEecHH-HHHHHHhcCccceEEeeeecCCcce---EEEeccCCCcceEEEEecCC---ceEEEEECCce
Q 019478 171 IKSLRSLCLDAVNVSGE-VLEFFIYSCPLLARLRVVFSLDLLS---LKVVGSSVKLKYLDICYCYF---MEEVEISAPSV 243 (340)
Q Consensus 171 ~~~L~~L~L~~~~i~~~-~l~~lls~cp~Le~L~L~~c~~~~~---l~i~~~~~~L~~L~l~~c~~---l~~l~i~~p~L 243 (340)
...|+.|.+-++.++.. ++..+.+.|..+++|+|.+..-..+ -.|...+|.|+.|+++..+- +..+..-..||
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 34566778888888764 4777788899999999998642111 12334558899999987652 22333445789
Q ss_pred eEEEEeccceee-----ecCCCcccceEEEeec
Q 019478 244 RSFKYYGPEIKL-----RMENVPQLLDISIGGG 271 (340)
Q Consensus 244 ~~l~l~~~~~~~-----~~~~~~~L~~l~l~~~ 271 (340)
+++-+.|+...+ .....|.++++++...
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 999998885443 2455677777766554
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=61.92 E-value=4.4 Score=18.91 Aligned_cols=10 Identities=20% Similarity=0.086 Sum_probs=4.4
Q ss_pred cceEEeeeec
Q 019478 198 LLARLRVVFS 207 (340)
Q Consensus 198 ~Le~L~L~~c 207 (340)
+|+.|++.+|
T Consensus 2 ~L~~L~l~~n 11 (17)
T PF13504_consen 2 NLRTLDLSNN 11 (17)
T ss_dssp T-SEEEETSS
T ss_pred ccCEEECCCC
Confidence 4444555444
No 74
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=53.97 E-value=3.1 Score=38.35 Aligned_cols=62 Identities=13% Similarity=0.172 Sum_probs=41.6
Q ss_pred ecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEcCCchhh
Q 019478 256 RMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNNFLCFC 320 (340)
Q Consensus 256 ~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~~~~c 320 (340)
.+++|+.|+++++.-. .+...-.+..+.++++..|+++ +|..+..+.+|++|++.++.+...
T Consensus 223 ef~gcs~L~Elh~g~N---~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~L 290 (565)
T KOG0472|consen 223 EFPGCSLLKELHVGEN---QIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSL 290 (565)
T ss_pred CCCccHHHHHHHhccc---HHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccC
Confidence 5778888888877543 3333344556678888888887 666666777777777777554443
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=52.77 E-value=8.6 Score=19.16 Aligned_cols=9 Identities=22% Similarity=0.091 Sum_probs=5.0
Q ss_pred ceEEeeeec
Q 019478 199 LARLRVVFS 207 (340)
Q Consensus 199 Le~L~L~~c 207 (340)
|++|+|++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 455555555
No 76
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=47.51 E-value=5.6 Score=37.31 Aligned_cols=36 Identities=28% Similarity=0.279 Sum_probs=18.5
Q ss_pred CCCCCCceEEeeeEEecH-HHHHHHHhcCccceEEeeeecC
Q 019478 169 SNIKSLRSLCLDAVNVSG-EVLEFFIYSCPLLARLRVVFSL 208 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~i~~-~~l~~lls~cp~Le~L~L~~c~ 208 (340)
..+++|++|+|++..|++ .++ +.++.|+.|++.+..
T Consensus 115 ~~~~~L~~L~ls~N~I~~i~~l----~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFNKITKLEGL----STLTLLKELNLSGNL 151 (414)
T ss_pred hhhhcchheeccccccccccch----hhccchhhheeccCc
Confidence 456666666666555543 222 223346666666553
No 77
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=43.71 E-value=3.7 Score=38.07 Aligned_cols=144 Identities=20% Similarity=0.235 Sum_probs=88.4
Q ss_pred CCCCCCceEEeeeEEecHHHHHHHHhcC-ccceEEeeeecCCcceE-EEeccCCCcceEEEEecCCceEEEE---ECCce
Q 019478 169 SNIKSLRSLCLDAVNVSGEVLEFFIYSC-PLLARLRVVFSLDLLSL-KVVGSSVKLKYLDICYCYFMEEVEI---SAPSV 243 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~i~~~~l~~lls~c-p~Le~L~L~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~l~i---~~p~L 243 (340)
..++.++.|.+.+..+.+ +....... ++|+.|++..-. +..+ .-...++.|+.|.+.++. +.++.- ..++|
T Consensus 113 ~~~~~l~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L 188 (394)
T COG4886 113 LELTNLTSLDLDNNNITD--IPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNL 188 (394)
T ss_pred hcccceeEEecCCccccc--Cccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhh
Confidence 445778888888877654 22223334 378888888764 3322 111234889999999887 665543 67899
Q ss_pred eEEEEecccee-eec--CCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEc
Q 019478 244 RSFKYYGPEIK-LRM--ENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVN 314 (340)
Q Consensus 244 ~~l~l~~~~~~-~~~--~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~ 314 (340)
+.+.+++.... +.. +....|+++.+..... ......+..+.++..|.+. .+.......+++.|.+..
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~----~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~ 264 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSI----IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSN 264 (394)
T ss_pred hheeccCCccccCchhhhhhhhhhhhhhcCCcc----eecchhhhhcccccccccCCceeeeccchhccccccceecccc
Confidence 99999988543 222 2444477777754410 1112234455566666544 256677888899999888
Q ss_pred CCchhh
Q 019478 315 NFLCFC 320 (340)
Q Consensus 315 ~~~~~c 320 (340)
+.+..-
T Consensus 265 n~i~~i 270 (394)
T COG4886 265 NQISSI 270 (394)
T ss_pred cccccc
Confidence 555443
No 78
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=39.69 E-value=3 Score=41.43 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=24.9
Q ss_pred HHHHHHhcCccceEEeeeecCCcc---eEEEeccCCCcceEEEEecC
Q 019478 188 VLEFFIYSCPLLARLRVVFSLDLL---SLKVVGSSVKLKYLDICYCY 231 (340)
Q Consensus 188 ~l~~lls~cp~Le~L~L~~c~~~~---~l~i~~~~~~L~~L~l~~c~ 231 (340)
.+..|+.-.+.++.|.+....+-+ .+.|- +..+||.|.+.+|+
T Consensus 75 qLq~i~d~lqkt~~lkl~~~pa~~pt~pi~if-pF~sLr~LElrg~~ 120 (1096)
T KOG1859|consen 75 QLQRILDFLQKTKVLKLLPSPARDPTEPISIF-PFRSLRVLELRGCD 120 (1096)
T ss_pred HHHHHHHHHhhheeeeecccCCCCCCCCceec-cccceeeEEecCcc
Confidence 455556666666777766654322 22222 23677777777776
No 79
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=34.16 E-value=66 Score=28.43 Aligned_cols=160 Identities=16% Similarity=0.122 Sum_probs=84.8
Q ss_pred CCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCc-ceEEEeccCCCcceEEEEecCCceEEEEECCceeEEEE
Q 019478 170 NIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDL-LSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKY 248 (340)
Q Consensus 170 ~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~-~~l~i~~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l 248 (340)
.+..++.++|++..|+.++.+.+...-.+-+.|.+.+-... +..-...--.+|+-| -..-+-||+|+..++
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~L--------l~aLlkcp~l~~v~L 99 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVML--------LKALLKCPRLQKVDL 99 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHH--------HHHHhcCCcceeeec
Confidence 46778899999999988765554333233333333332211 100000000111111 112245788888888
Q ss_pred eccceee--------ecCCCcccceEEEeec-cC----chhhhh-----hhhhhccCCCcceEEEE----------cccC
Q 019478 249 YGPEIKL--------RMENVPQLLDISIGGG-YG----VRMKHA-----ISPIMSYFHQLETLELG----------FVLN 300 (340)
Q Consensus 249 ~~~~~~~--------~~~~~~~L~~l~l~~~-~~----~~~~~~-----~~~ll~~~~~L~~L~l~----------~~~~ 300 (340)
+++.... .++....|+++.+.-+ .+ ..+..+ ..+=..+-|.|+..... ..+.
T Consensus 100 SDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~ 179 (388)
T COG5238 100 SDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAA 179 (388)
T ss_pred cccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHH
Confidence 8773211 2455677899988766 11 112222 22224566777777766 1222
Q ss_pred CcCCC-cceEEEEEcCCchh--hhHHHHHHHHhccccccc
Q 019478 301 AVSIL-NLKCFRVVNNFLCF--CLILLLFLRKICNSHNVS 337 (340)
Q Consensus 301 ~~~f~-~L~~L~l~~~~~~~--c~~l~~~~l~~cp~~~~~ 337 (340)
...+. +|+.+++..|.+.- -..|..+=+..|.++++.
T Consensus 180 ~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevL 219 (388)
T COG5238 180 LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVL 219 (388)
T ss_pred HHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceee
Confidence 33344 88888888866653 355666666777776553
No 80
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=28.86 E-value=12 Score=33.53 Aligned_cols=37 Identities=27% Similarity=0.301 Sum_probs=32.2
Q ss_pred CCCCChHHHHHHHhcCChHHHHHHHHhhhhhhhhccc
Q 019478 21 ISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWTF 57 (340)
Q Consensus 21 ~s~LPd~il~~Ils~L~~~d~~r~~~vsk~W~~lw~~ 57 (340)
+..+|++++..|++++.-+++++++.|+++-+.+-+.
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~ 44 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSH 44 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhc
Confidence 4578999999999999999999999999999765333
No 81
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=26.10 E-value=24 Score=36.72 Aligned_cols=68 Identities=21% Similarity=0.340 Sum_probs=34.4
Q ss_pred CCCCCCCCceEEeeeEEecHHHHH----HHHh-cCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCce
Q 019478 167 TLSNIKSLRSLCLDAVNVSGEVLE----FFIY-SCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFME 234 (340)
Q Consensus 167 ~~~~~~~L~~L~L~~~~i~~~~l~----~lls-~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~ 234 (340)
....+++|+.|.+..+.+.+..+. .... .+|+|..+.+.+|.+...+......++|+.|.+..|+.++
T Consensus 712 ~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e 784 (889)
T KOG4658|consen 712 SLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLE 784 (889)
T ss_pred ccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccc
Confidence 345566666666666655432110 0011 2455566666666555444333223666666666666443
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=25.62 E-value=32 Score=33.19 Aligned_cols=63 Identities=16% Similarity=0.069 Sum_probs=44.8
Q ss_pred CCCCCCceEEeeeEEec-HHHHHHHHhcCccceEEeeeecCCc--ceEEEec-cCCCcceEEEEecC
Q 019478 169 SNIKSLRSLCLDAVNVS-GEVLEFFIYSCPLLARLRVVFSLDL--LSLKVVG-SSVKLKYLDICYCY 231 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~i~-~~~l~~lls~cp~Le~L~L~~c~~~--~~l~i~~-~~~~L~~L~l~~c~ 231 (340)
.++|.+..++|++.++- -+.+..+....|+|+.|+|.+.... ....+.. ....|++|.+.+.+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNP 281 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCc
Confidence 67899999999988854 3678888889999999999987321 1111111 11577888888766
No 83
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=24.54 E-value=31 Score=32.02 Aligned_cols=59 Identities=14% Similarity=0.202 Sum_probs=36.8
Q ss_pred cCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------c-ccCCcCCCcceEEEEEcCCch
Q 019478 257 MENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------F-VLNAVSILNLKCFRVVNNFLC 318 (340)
Q Consensus 257 ~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~-~~~~~~f~~L~~L~l~~~~~~ 318 (340)
+...++|+++++.-. .+...-...+.++..|+.|.|. + ...+-.+.+|+.|++.+|-+.
T Consensus 270 f~~L~~L~~lnlsnN---~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNN---KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred HhhcccceEeccCCC---ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence 445677777776533 2233334456677777777776 1 234567788899998885444
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=22.84 E-value=37 Score=17.36 Aligned_cols=12 Identities=33% Similarity=0.354 Sum_probs=7.0
Q ss_pred CCCceEEeeeEE
Q 019478 172 KSLRSLCLDAVN 183 (340)
Q Consensus 172 ~~L~~L~L~~~~ 183 (340)
++|+.|+|.+..
T Consensus 2 ~~L~~L~L~~N~ 13 (26)
T smart00369 2 PNLRELDLSNNQ 13 (26)
T ss_pred CCCCEEECCCCc
Confidence 456666665554
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=22.84 E-value=37 Score=17.36 Aligned_cols=12 Identities=33% Similarity=0.354 Sum_probs=7.0
Q ss_pred CCCceEEeeeEE
Q 019478 172 KSLRSLCLDAVN 183 (340)
Q Consensus 172 ~~L~~L~L~~~~ 183 (340)
++|+.|+|.+..
T Consensus 2 ~~L~~L~L~~N~ 13 (26)
T smart00370 2 PNLRELDLSNNQ 13 (26)
T ss_pred CCCCEEECCCCc
Confidence 456666665554
No 86
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=22.49 E-value=1.3e+02 Score=17.91 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=11.5
Q ss_pred CcceEEEE----cccCCcCCC-cceEEEEE
Q 019478 289 QLETLELG----FVLNAVSIL-NLKCFRVV 313 (340)
Q Consensus 289 ~L~~L~l~----~~~~~~~f~-~L~~L~l~ 313 (340)
+|++|.+. .+.....++ +|++|.+.
T Consensus 13 ~l~~L~~g~~fn~~i~~~~lP~sl~~L~fg 42 (44)
T PF05725_consen 13 SLKSLIFGSSFNQPIEPGSLPNSLKSLSFG 42 (44)
T ss_pred CCeEEEECCccCccCCCCccCCCceEEEee
Confidence 45555553 222233343 56666554
No 87
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=22.26 E-value=1.5e+02 Score=18.29 Aligned_cols=34 Identities=9% Similarity=0.314 Sum_probs=25.6
Q ss_pred CCCceEEeeeEEecHH---HHHHHHhcCccceEEeee
Q 019478 172 KSLRSLCLDAVNVSGE---VLEFFIYSCPLLARLRVV 205 (340)
Q Consensus 172 ~~L~~L~L~~~~i~~~---~l~~lls~cp~Le~L~L~ 205 (340)
.+|+.+.+.+..-... .+.-++.+.+.||.+.+.
T Consensus 14 s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 14 SHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred heeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 6899999976653332 366789999999998875
No 88
>COG4829 CatC1 Muconolactone delta-isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.91 E-value=36 Score=23.86 Aligned_cols=34 Identities=29% Similarity=0.552 Sum_probs=22.8
Q ss_pred CChHHHHHHHhcCChHHHHHHHHhhh--hhhhhccc
Q 019478 24 LPDEILVNIISRLAVREAARTSVLSS--RWKYLWTF 57 (340)
Q Consensus 24 LPd~il~~Ils~L~~~d~~r~~~vsk--~W~~lw~~ 57 (340)
+||++=.....++..++.++...+-+ .|+++|+.
T Consensus 11 ~PdsMdad~~er~~A~Eka~s~~Lq~~G~~~~lWR~ 46 (98)
T COG4829 11 VPDSMDADAVERVRAREKARSRELQAQGKLLRLWRR 46 (98)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhc
Confidence 55555555666667778887776643 58888883
Done!