Query 019478
Match_columns 340
No_of_seqs 128 out of 1591
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 16:43:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019478.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019478hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 99.8 1E-18 3.6E-23 169.3 12.8 153 17-208 2-167 (594)
2 2ast_B S-phase kinase-associat 99.7 1E-19 3.5E-24 164.0 -0.7 269 18-338 6-302 (336)
3 3ogk_B Coronatine-insensitive 99.7 1.2E-18 4.2E-23 168.7 2.6 270 22-335 14-345 (592)
4 1fs1_A SKP2 F-BOX, cyclin A/CD 98.9 8.9E-10 3.1E-14 70.4 3.4 39 18-56 6-44 (53)
5 4fcg_A Uncharacterized protein 98.8 6.1E-10 2.1E-14 99.7 1.4 146 163-314 118-286 (328)
6 3ogk_B Coronatine-insensitive 98.8 3.5E-08 1.2E-12 95.2 12.0 38 168-205 289-326 (592)
7 4fcg_A Uncharacterized protein 98.7 1E-08 3.4E-13 91.8 5.7 217 91-323 72-319 (328)
8 2ast_B S-phase kinase-associat 98.5 3.9E-09 1.3E-13 94.4 -2.1 174 121-315 62-257 (336)
9 3e4g_A ATP synthase subunit S, 98.4 1.6E-08 5.4E-13 81.3 -1.2 64 171-235 60-129 (176)
10 2p1m_B Transport inhibitor res 98.4 3.5E-07 1.2E-11 88.1 7.5 75 260-338 455-537 (594)
11 3e4g_A ATP synthase subunit S, 98.4 1.5E-07 5.1E-12 75.5 2.8 67 169-235 82-154 (176)
12 2z80_A TOLL-like receptor 2, v 98.3 9.1E-07 3.1E-11 79.7 7.4 45 282-326 271-323 (353)
13 1ozn_A Reticulon 4 receptor; N 98.3 6.3E-08 2.1E-12 84.6 -0.4 148 165-318 73-238 (285)
14 3rfs_A Internalin B, repeat mo 98.3 7.4E-08 2.5E-12 83.6 -0.2 155 168-330 59-231 (272)
15 2id5_A Lingo-1, leucine rich r 98.3 1.5E-07 5.3E-12 88.3 1.2 152 165-321 145-337 (477)
16 4ezg_A Putative uncharacterize 98.2 1.5E-07 5.2E-12 77.5 0.4 140 169-318 41-194 (197)
17 3zyi_A Leucine-rich repeat-con 98.2 2.4E-07 8.2E-12 86.5 1.1 148 166-318 141-303 (452)
18 2z66_A Variable lymphocyte rec 98.2 3.1E-07 1.1E-11 81.0 1.1 142 168-314 48-208 (306)
19 3zyi_A Leucine-rich repeat-con 98.2 3.5E-07 1.2E-11 85.3 1.5 146 166-318 117-279 (452)
20 3oja_A Leucine-rich immune mol 98.2 7.3E-07 2.5E-11 84.1 3.3 95 168-270 54-153 (487)
21 3zyj_A Leucine-rich repeat-con 98.2 2.9E-07 1E-11 85.6 0.5 147 167-318 131-292 (440)
22 3o53_A Protein LRIM1, AGAP0063 98.1 8.9E-07 3E-11 78.6 3.1 75 169-251 55-130 (317)
23 1h6u_A Internalin H; cell adhe 98.1 2.8E-07 9.5E-12 81.6 -0.6 174 129-318 41-230 (308)
24 4fmz_A Internalin; leucine ric 98.1 5.2E-07 1.8E-11 80.9 0.9 142 168-319 106-257 (347)
25 3vq2_A TLR4, TOLL-like recepto 98.1 5.8E-07 2E-11 86.9 1.1 72 241-315 399-483 (606)
26 2o6q_A Variable lymphocyte rec 98.1 4.9E-07 1.7E-11 78.3 0.4 149 167-321 56-222 (270)
27 4fmz_A Internalin; leucine ric 98.1 6E-07 2E-11 80.5 0.9 176 129-319 88-279 (347)
28 3o6n_A APL1; leucine-rich repe 98.1 3.2E-06 1.1E-10 77.1 5.6 140 166-317 159-307 (390)
29 3o53_A Protein LRIM1, AGAP0063 98.1 2.5E-06 8.6E-11 75.6 4.7 99 169-271 31-130 (317)
30 2e31_A FBS1, F-box only protei 98.1 1.8E-06 6.1E-11 74.9 3.4 38 19-56 49-87 (297)
31 2z81_A CD282 antigen, TOLL-lik 98.0 1.7E-06 5.8E-11 82.5 3.3 150 168-326 357-519 (549)
32 2z63_A TOLL-like receptor 4, v 98.0 3.3E-07 1.1E-11 87.9 -1.8 150 169-322 344-536 (570)
33 3zyj_A Leucine-rich repeat-con 98.0 5.5E-07 1.9E-11 83.7 -0.3 147 167-318 107-268 (440)
34 1h6u_A Internalin H; cell adhe 98.0 1.1E-06 3.7E-11 77.7 1.4 153 129-296 63-225 (308)
35 2ca6_A RAN GTPase-activating p 98.0 5.2E-07 1.8E-11 82.3 -0.7 149 169-319 91-288 (386)
36 2id5_A Lingo-1, leucine rich r 98.0 2.5E-06 8.6E-11 80.0 3.4 151 165-321 73-240 (477)
37 1ozn_A Reticulon 4 receptor; N 98.0 2.6E-07 8.9E-12 80.6 -3.2 147 168-319 52-215 (285)
38 3oja_B Anopheles plasmodium-re 98.0 3.4E-06 1.2E-10 81.5 4.3 141 166-318 165-314 (597)
39 2ra8_A Uncharacterized protein 98.0 9.5E-07 3.3E-11 79.8 0.3 144 169-317 136-319 (362)
40 3oja_A Leucine-rich immune mol 98.0 2.2E-06 7.6E-11 80.7 2.8 99 169-271 31-130 (487)
41 1xku_A Decorin; proteoglycan, 98.0 2.2E-06 7.6E-11 76.3 2.6 140 171-315 120-273 (330)
42 1ogq_A PGIP-2, polygalacturona 98.0 5.4E-07 1.9E-11 79.8 -1.6 161 164-332 117-302 (313)
43 3bz5_A Internalin-J, INLJ; leu 98.0 2.9E-06 1E-10 79.2 3.2 139 168-320 102-248 (457)
44 3rfs_A Internalin B, repeat mo 97.9 9.8E-08 3.4E-12 82.9 -6.7 141 169-317 38-193 (272)
45 3l2o_B F-box only protein 4; s 97.9 2.1E-06 7.3E-11 73.7 1.6 33 21-53 5-37 (312)
46 3v47_A TOLL-like receptor 5B a 97.9 4.3E-07 1.5E-11 84.6 -3.0 101 220-324 299-415 (455)
47 3t6q_A CD180 antigen; protein- 97.9 2.5E-07 8.4E-12 89.6 -4.9 36 283-318 471-513 (606)
48 4glp_A Monocyte differentiatio 97.9 1.8E-05 6.1E-10 69.8 6.8 194 101-321 65-288 (310)
49 1wwl_A Monocyte differentiatio 97.9 1.7E-06 5.7E-11 76.6 -0.1 170 128-321 94-290 (312)
50 1h6t_A Internalin B; cell adhe 97.9 1.3E-06 4.4E-11 76.6 -0.8 135 169-314 65-209 (291)
51 3o6n_A APL1; leucine-rich repe 97.9 1.1E-05 3.8E-10 73.5 5.3 92 220-318 186-285 (390)
52 2z63_A TOLL-like receptor 4, v 97.9 3.4E-06 1.1E-10 80.8 1.7 139 169-315 322-480 (570)
53 2ca6_A RAN GTPase-activating p 97.9 5.4E-06 1.9E-10 75.5 2.9 150 168-318 56-257 (386)
54 3t6q_A CD180 antigen; protein- 97.9 4.4E-06 1.5E-10 80.7 2.4 105 163-269 292-408 (606)
55 2z66_A Variable lymphocyte rec 97.8 1.4E-05 4.8E-10 70.2 5.3 140 171-316 27-186 (306)
56 1o6v_A Internalin A; bacterial 97.8 5.1E-06 1.8E-10 77.7 2.6 73 241-318 177-256 (466)
57 3bz5_A Internalin-J, INLJ; leu 97.8 4.9E-06 1.7E-10 77.7 2.5 167 129-314 85-263 (457)
58 1wwl_A Monocyte differentiatio 97.8 1.3E-06 4.4E-11 77.3 -1.5 149 170-320 93-268 (312)
59 1p9a_G Platelet glycoprotein I 97.8 2.8E-06 9.7E-11 74.3 0.7 147 166-320 49-211 (290)
60 1ogq_A PGIP-2, polygalacturona 97.8 3.6E-06 1.2E-10 74.5 1.4 148 165-318 94-257 (313)
61 2z81_A CD282 antigen, TOLL-lik 97.8 3.7E-05 1.2E-09 73.2 8.4 147 165-316 67-234 (549)
62 2xwt_C Thyrotropin receptor; s 97.8 4E-06 1.4E-10 71.0 1.4 101 167-269 50-164 (239)
63 2z80_A TOLL-like receptor 2, v 97.8 1.6E-06 5.6E-11 78.0 -1.2 173 158-335 80-280 (353)
64 4eco_A Uncharacterized protein 97.8 2.5E-06 8.4E-11 83.2 -0.1 160 170-336 431-634 (636)
65 1p9a_G Platelet glycoprotein I 97.8 1.7E-06 5.8E-11 75.8 -1.3 144 171-320 30-187 (290)
66 3v47_A TOLL-like receptor 5B a 97.8 1.4E-05 4.8E-10 74.3 4.7 145 170-318 210-384 (455)
67 3rgz_A Protein brassinosteroid 97.8 2.9E-06 1E-10 84.5 0.0 72 240-315 199-279 (768)
68 1m9s_A Internalin B; cell inva 97.8 1.7E-06 5.7E-11 83.7 -1.7 136 169-314 62-206 (605)
69 1xku_A Decorin; proteoglycan, 97.8 8.9E-06 3.1E-10 72.3 3.0 76 241-319 171-254 (330)
70 4eco_A Uncharacterized protein 97.8 1.3E-05 4.4E-10 78.1 4.1 166 129-319 249-447 (636)
71 2ell_A Acidic leucine-rich nuc 97.8 1.6E-06 5.3E-11 69.3 -2.1 101 169-271 21-130 (168)
72 3oja_B Anopheles plasmodium-re 97.8 1.6E-05 5.5E-10 76.8 4.5 92 220-318 192-291 (597)
73 3vq2_A TLR4, TOLL-like recepto 97.8 2.7E-06 9.1E-11 82.2 -1.0 154 165-322 392-563 (606)
74 3rgz_A Protein brassinosteroid 97.7 5.2E-06 1.8E-10 82.7 0.9 135 129-271 178-328 (768)
75 2ft3_A Biglycan; proteoglycan, 97.7 3.6E-06 1.2E-10 75.0 -0.4 32 284-315 237-274 (332)
76 1o6v_A Internalin A; bacterial 97.7 1.3E-05 4.4E-10 75.0 2.8 142 168-319 86-235 (466)
77 2z62_A TOLL-like receptor 4, v 97.7 1.4E-06 4.8E-11 75.5 -3.6 154 167-325 71-245 (276)
78 3g06_A SSPH2 (leucine-rich rep 97.7 3.6E-05 1.2E-09 74.5 5.9 93 220-320 201-299 (622)
79 3v7d_B Cell division control p 97.7 9.5E-06 3.2E-10 75.3 1.7 41 16-56 10-50 (464)
80 3j0a_A TOLL-like receptor 5; m 97.7 3.1E-05 1.1E-09 77.9 5.5 35 284-318 334-375 (844)
81 2o6q_A Variable lymphocyte rec 97.7 4.1E-06 1.4E-10 72.4 -1.2 141 172-318 37-194 (270)
82 3m19_A Variable lymphocyte rec 97.7 4.6E-06 1.6E-10 71.3 -0.9 141 172-318 35-192 (251)
83 3g06_A SSPH2 (leucine-rich rep 97.6 2.6E-05 8.9E-10 75.5 4.1 164 128-316 39-212 (622)
84 3j0a_A TOLL-like receptor 5; m 97.6 4.6E-05 1.6E-09 76.7 5.8 42 166-208 332-373 (844)
85 1m9s_A Internalin B; cell inva 97.6 3.3E-06 1.1E-10 81.6 -2.6 141 169-320 40-190 (605)
86 2xwt_C Thyrotropin receptor; s 97.6 3.6E-05 1.2E-09 65.0 3.8 141 172-315 31-189 (239)
87 1h6t_A Internalin B; cell adhe 97.6 5.6E-06 1.9E-10 72.5 -1.9 142 169-321 43-194 (291)
88 1jl5_A Outer protein YOPM; leu 97.5 5.5E-05 1.9E-09 70.5 4.6 31 220-251 277-307 (454)
89 2o6s_A Variable lymphocyte rec 97.5 6.7E-06 2.3E-10 68.0 -1.6 138 171-330 27-174 (208)
90 1z7x_W Ribonuclease inhibitor; 97.5 3E-06 1E-10 78.9 -4.5 166 168-335 24-230 (461)
91 4ezg_A Putative uncharacterize 97.5 4.3E-05 1.5E-09 62.6 3.0 65 166-231 106-170 (197)
92 4ecn_A Leucine-rich repeat pro 97.5 3.4E-05 1.2E-09 77.5 2.6 122 129-271 491-629 (876)
93 2je0_A Acidic leucine-rich nuc 97.5 1.1E-05 3.8E-10 62.8 -0.8 37 171-207 16-52 (149)
94 2ovr_B FBW7, F-BOX/WD repeat p 97.5 6.2E-05 2.1E-09 69.5 3.9 38 17-54 15-52 (445)
95 1a9n_A U2A', U2A'; complex (nu 97.5 8.9E-05 3E-09 59.5 4.3 127 169-317 16-152 (176)
96 3goz_A Leucine-rich repeat-con 97.5 6.2E-06 2.1E-10 74.5 -3.1 142 172-316 80-264 (362)
97 1p22_A F-BOX/WD-repeat protein 97.4 3.4E-05 1.2E-09 71.1 1.6 37 17-53 7-47 (435)
98 1z7x_W Ribonuclease inhibitor; 97.4 4.8E-06 1.7E-10 77.5 -4.3 161 173-335 86-287 (461)
99 4ecn_A Leucine-rich repeat pro 97.4 7.5E-06 2.6E-10 82.2 -3.1 93 221-318 549-657 (876)
100 2z7x_B TOLL-like receptor 1, v 97.4 0.00018 6.3E-09 67.9 6.6 174 121-322 293-486 (520)
101 1xeu_A Internalin C; cellular 97.4 4E-05 1.4E-09 65.9 1.8 36 169-207 60-95 (263)
102 2z7x_B TOLL-like receptor 1, v 97.4 0.00021 7.1E-09 67.6 6.8 148 168-317 216-411 (520)
103 3cvr_A Invasion plasmid antige 97.4 0.00015 5.2E-09 69.4 5.5 142 169-320 97-245 (571)
104 1a9n_A U2A', U2A'; complex (nu 97.4 1.8E-05 6.3E-10 63.6 -0.8 58 170-231 40-99 (176)
105 1ziw_A TOLL-like receptor 3; i 97.4 1.3E-05 4.3E-10 78.6 -2.0 151 165-319 398-598 (680)
106 3a79_B TLR6, VLRB.59, TOLL-lik 97.4 0.00027 9.3E-09 67.5 7.1 148 169-323 350-516 (562)
107 2z62_A TOLL-like receptor 4, v 97.3 2.2E-05 7.4E-10 67.9 -0.8 146 167-318 47-213 (276)
108 2ell_A Acidic leucine-rich nuc 97.3 0.00017 5.9E-09 57.2 4.1 116 196-314 23-156 (168)
109 3m19_A Variable lymphocyte rec 97.3 2.3E-05 8E-10 66.8 -1.5 124 167-296 54-187 (251)
110 1jl5_A Outer protein YOPM; leu 97.2 0.00015 5.2E-09 67.5 3.6 99 220-319 257-371 (454)
111 4glp_A Monocyte differentiatio 97.2 0.00039 1.3E-08 61.1 6.1 148 171-319 63-238 (310)
112 3un9_A NLR family member X1; l 97.2 6E-06 2.1E-10 74.9 -6.0 123 172-296 101-247 (372)
113 1ziw_A TOLL-like receptor 3; i 97.2 8E-05 2.7E-09 72.9 1.1 36 283-318 475-517 (680)
114 3goz_A Leucine-rich repeat-con 97.2 3.6E-05 1.2E-09 69.4 -1.4 146 172-319 109-298 (362)
115 4g8a_A TOLL-like receptor 4; l 97.2 5E-05 1.7E-09 73.3 -0.7 119 173-296 53-181 (635)
116 2je0_A Acidic leucine-rich nuc 97.1 1.3E-05 4.6E-10 62.4 -4.0 112 165-295 35-147 (149)
117 1xeu_A Internalin C; cellular 97.1 7.8E-05 2.7E-09 64.1 0.3 135 170-314 39-181 (263)
118 2o6s_A Variable lymphocyte rec 97.0 6.4E-05 2.2E-09 62.0 -1.2 82 167-251 47-134 (208)
119 2v9t_B SLIT homolog 2 protein 97.0 0.00037 1.3E-08 58.1 3.2 125 172-318 32-165 (220)
120 3cvr_A Invasion plasmid antige 97.0 0.00029 9.8E-09 67.5 2.7 132 171-321 79-223 (571)
121 1ds9_A Outer arm dynein; leuci 97.0 9.7E-06 3.3E-10 66.6 -6.6 100 167-271 43-150 (198)
122 2v70_A SLIT-2, SLIT homolog 2 96.9 0.00047 1.6E-08 57.4 3.4 130 171-321 31-170 (220)
123 3un9_A NLR family member X1; l 96.8 5.2E-05 1.8E-09 68.7 -3.4 36 172-207 126-165 (372)
124 2ft3_A Biglycan; proteoglycan, 96.8 6.7E-05 2.3E-09 66.7 -3.2 151 165-320 71-256 (332)
125 3a79_B TLR6, VLRB.59, TOLL-lik 96.7 0.0036 1.2E-07 59.7 8.3 147 169-317 246-440 (562)
126 2ra8_A Uncharacterized protein 96.7 0.00087 3E-08 60.3 3.6 142 194-335 136-310 (362)
127 2xot_A Amphoterin-induced prot 96.6 0.00019 6.4E-09 64.7 -1.6 145 172-322 39-207 (361)
128 2xot_A Amphoterin-induced prot 96.5 0.0012 4.2E-08 59.3 2.8 121 196-321 38-179 (361)
129 4g8a_A TOLL-like receptor 4; l 96.4 0.00044 1.5E-08 66.7 -0.9 151 168-321 416-584 (635)
130 4ay9_X Follicle-stimulating ho 96.3 0.0057 1.9E-07 54.6 6.4 14 283-296 197-210 (350)
131 3e6j_A Variable lymphocyte rec 96.3 0.0011 3.6E-08 55.6 1.3 128 171-321 39-176 (229)
132 2v70_A SLIT-2, SLIT homolog 2 96.2 0.00022 7.4E-09 59.5 -3.2 102 167-271 52-163 (220)
133 2v9t_B SLIT homolog 2 protein 96.1 0.0027 9.2E-08 52.7 3.0 75 241-318 56-141 (220)
134 1ds9_A Outer arm dynein; leuci 96.1 7E-05 2.4E-09 61.3 -6.8 83 167-253 65-152 (198)
135 2o6r_A Variable lymphocyte rec 96.1 0.0025 8.4E-08 50.8 2.3 67 257-326 72-146 (177)
136 1dce_A Protein (RAB geranylger 96.0 0.00082 2.8E-08 64.4 -0.9 31 174-207 443-473 (567)
137 3e6j_A Variable lymphocyte rec 95.8 0.0023 7.9E-08 53.5 1.3 60 257-319 84-149 (229)
138 3sb4_A Hypothetical leucine ri 95.8 0.011 3.7E-07 52.2 5.8 71 240-314 225-306 (329)
139 1w8a_A SLIT protein; signaling 95.7 0.0029 9.8E-08 51.3 1.2 78 241-321 54-143 (192)
140 2wfh_A SLIT homolog 2 protein 95.2 0.0075 2.6E-07 48.9 2.0 78 241-321 54-143 (193)
141 4ay9_X Follicle-stimulating ho 95.2 0.016 5.5E-07 51.6 4.4 148 167-319 49-216 (350)
142 4fdw_A Leucine rich hypothetic 95.1 0.018 6E-07 52.5 4.6 70 240-314 270-354 (401)
143 4b8c_D Glucose-repressible alc 95.0 0.0053 1.8E-07 60.6 0.7 102 193-319 220-330 (727)
144 1io0_A Tropomodulin; LRR prote 94.9 0.002 6.9E-08 52.0 -2.1 40 169-208 33-76 (185)
145 3g39_A Variable lymphocyte rec 94.5 0.023 7.8E-07 44.9 3.2 81 241-324 30-122 (170)
146 1w8a_A SLIT protein; signaling 94.5 0.0041 1.4E-07 50.3 -1.2 98 172-271 29-136 (192)
147 1dce_A Protein (RAB geranylger 94.4 0.008 2.7E-07 57.5 0.3 111 220-336 441-564 (567)
148 1io0_A Tropomodulin; LRR prote 94.1 0.0029 9.9E-08 51.1 -3.0 120 186-318 25-164 (185)
149 3sb4_A Hypothetical leucine ri 94.0 0.057 1.9E-06 47.5 5.1 36 172-208 202-237 (329)
150 2r9u_A Variable lymphocyte rec 93.4 0.048 1.6E-06 43.2 3.2 75 241-318 33-118 (174)
151 2wfh_A SLIT homolog 2 protein 92.6 0.052 1.8E-06 43.8 2.2 76 241-319 31-116 (193)
152 4fdw_A Leucine rich hypothetic 92.0 0.14 4.7E-06 46.5 4.6 14 167-180 175-188 (401)
153 4b8c_D Glucose-repressible alc 92.0 0.0075 2.6E-07 59.5 -4.2 100 166-271 218-326 (727)
154 2o6r_A Variable lymphocyte rec 91.7 0.079 2.7E-06 41.8 2.3 75 241-318 28-113 (177)
155 2ifg_A High affinity nerve gro 88.7 0.24 8.2E-06 43.7 3.1 77 242-321 32-120 (347)
156 4fs7_A Uncharacterized protein 85.1 0.33 1.1E-05 43.7 2.0 31 284-314 339-375 (394)
157 3rw6_A Nuclear RNA export fact 83.3 0.83 2.8E-05 38.8 3.5 54 282-335 190-254 (267)
158 2ifg_A High affinity nerve gro 80.4 0.71 2.4E-05 40.5 2.1 62 257-321 27-96 (347)
159 3rw6_A Nuclear RNA export fact 80.4 0.12 4.2E-06 44.0 -2.7 37 171-207 169-206 (267)
160 3g39_A Variable lymphocyte rec 80.4 0.75 2.6E-05 35.9 2.1 57 260-319 29-92 (170)
161 2r9u_A Variable lymphocyte rec 78.4 1.1 3.9E-05 35.0 2.6 57 260-319 32-95 (174)
162 4gt6_A Cell surface protein; l 77.9 0.93 3.2E-05 40.7 2.1 53 257-313 330-386 (394)
163 4fs7_A Uncharacterized protein 74.6 2.3 8E-05 38.0 3.9 114 167-296 248-374 (394)
164 4gt6_A Cell surface protein; l 62.9 7.7 0.00026 34.5 4.7 70 241-314 288-366 (394)
165 4h09_A Hypothetical leucine ri 50.4 4.7 0.00016 35.7 1.0 53 257-312 282-340 (379)
166 4h09_A Hypothetical leucine ri 43.2 6.5 0.00022 34.7 0.8 53 240-296 285-341 (379)
167 1pgv_A TMD-1, tropomodulin TMD 40.6 12 0.0004 30.1 1.8 37 172-208 70-109 (197)
168 1pgv_A TMD-1, tropomodulin TMD 34.6 19 0.00066 28.7 2.2 36 172-207 98-136 (197)
169 2kwv_A RAD30 homolog B, DNA po 26.8 40 0.0014 19.7 2.0 22 14-35 14-35 (48)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=1e-18 Score=169.28 Aligned_cols=153 Identities=15% Similarity=0.168 Sum_probs=90.1
Q ss_pred cCCcCCCCChHHHHHHHhcCC-hHHHHHHHHhhhhhhhhcc-ccceeEecccccccccCCCchhhHHhHHHHHHHHHHHH
Q 019478 17 LVDWISRLPDEILVNIISRLA-VREAARTSVLSSRWKYLWT-FTTCLNFSALKMLWNVKKDPATLEEERYNYINWVNDVL 94 (340)
Q Consensus 17 ~~d~~s~LPd~il~~Ils~L~-~~d~~r~~~vsk~W~~lw~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l 94 (340)
+.|.|+.||||||.+||+||+ .+|+++++.|||+|+++.. ....+.+....... ....+
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~-------------------~~~~~ 62 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVS-------------------PATVI 62 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSC-------------------HHHHH
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccC-------------------HHHHH
Confidence 358899999999999999999 9999999999999998722 12234443221110 01223
Q ss_pred hhcCCCceeEEEEEEEeCC--------CCchhHHHHHHHHHh--CCCeEEEEEecCCCCCCCCCCceeeecCCceEeCCC
Q 019478 95 DSHMGLCINEFRLCFELRN--------SHGSFITHWIFTALA--KKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRS 164 (340)
Q Consensus 95 ~~~~~~~l~~l~l~~~~~~--------~~~~~~~~w~~~~~~--~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~L~~~ 164 (340)
... +.++.+.+...... .....+..|+..... +++++|++..+.... .....+.
T Consensus 63 ~~~--~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-----~~~~~l~--------- 126 (594)
T 2p1m_B 63 RRF--PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTD-----DCLELIA--------- 126 (594)
T ss_dssp HHC--TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCH-----HHHHHHH---------
T ss_pred hhC--CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcH-----HHHHHHH---------
Confidence 333 34888888654211 111345567777654 489999997653211 1111111
Q ss_pred CCCCCCCCCCceEEeeeE-EecHHHHHHHHhcCccceEEeeeecC
Q 019478 165 PRTLSNIKSLRSLCLDAV-NVSGEVLEFFIYSCPLLARLRVVFSL 208 (340)
Q Consensus 165 ~~~~~~~~~L~~L~L~~~-~i~~~~l~~lls~cp~Le~L~L~~c~ 208 (340)
..+++|++|+|.++ .+++.++..++.+||+|++|++.+|.
T Consensus 127 ----~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 127 ----KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp ----HHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred ----HhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 24677777777776 46666677777777777777777664
No 2
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.74 E-value=1e-19 Score=164.04 Aligned_cols=269 Identities=18% Similarity=0.238 Sum_probs=160.7
Q ss_pred CCcCCCCChHHHHHHHhcCChHHHHHHHHhhhhhhhhcc---ccceeEecccccccccCCCchhhHHhHHHHHHHHHHHH
Q 019478 18 VDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWT---FTTCLNFSALKMLWNVKKDPATLEEERYNYINWVNDVL 94 (340)
Q Consensus 18 ~d~~s~LPd~il~~Ils~L~~~d~~r~~~vsk~W~~lw~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l 94 (340)
...|+.||||++.+||+||+.+|+++++.|||+|+++.. ....+++....+.+ ..+...+
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~-----------------~~~~~~~ 68 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHP-----------------DVTGRLL 68 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCCH-----------------HHHHHHH
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCCH-----------------HHHHhhh
Confidence 455899999999999999999999999999999998742 12235555443321 1122222
Q ss_pred hhcCCCceeEEEEEEE-eCCCCchhHHHHHHHHHhCCCeEEEEEecCCCCCCCCCCceeeecCCceEeCCCCCCCCCCCC
Q 019478 95 DSHMGLCINEFRLCFE-LRNSHGSFITHWIFTALAKKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLSNIKS 173 (340)
Q Consensus 95 ~~~~~~~l~~l~l~~~-~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~L~~~~~~~~~~~~ 173 (340)
.. .++.+.+... ....... ...-.++++|++..+.... . .++..+..+++
T Consensus 69 ~~----~l~~L~l~~n~l~~~~~~-------~~~~~~L~~L~L~~~~l~~--------~----------~~~~~~~~~~~ 119 (336)
T 2ast_B 69 SQ----GVIAFRCPRSFMDQPLAE-------HFSPFRVQHMDLSNSVIEV--------S----------TLHGILSQCSK 119 (336)
T ss_dssp HT----TCSEEECTTCEECSCCCS-------CCCCBCCCEEECTTCEECH--------H----------HHHHHHTTBCC
T ss_pred hc----cceEEEcCCccccccchh-------hccCCCCCEEEccCCCcCH--------H----------HHHHHHhhCCC
Confidence 11 2555554111 0110000 0011355555553221000 0 02223367889
Q ss_pred CceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE---eccCCCcceEEEEecCCceEE-----EEECC-cee
Q 019478 174 LRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV---VGSSVKLKYLDICYCYFMEEV-----EISAP-SVR 244 (340)
Q Consensus 174 L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i---~~~~~~L~~L~l~~c~~l~~l-----~i~~p-~L~ 244 (340)
|++|+|.++.+++..... ++.|++|++|++.+|..++...+ -..+++|++|.+.+|..+++. .-..| +|+
T Consensus 120 L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 198 (336)
T ss_dssp CSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred CCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence 999999888887765554 55689999999998865543111 224588999999988445532 12357 999
Q ss_pred EEEEeccce-------eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-----ccc---CCcCCCcceE
Q 019478 245 SFKYYGPEI-------KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-----FVL---NAVSILNLKC 309 (340)
Q Consensus 245 ~l~l~~~~~-------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-----~~~---~~~~f~~L~~ 309 (340)
+|+++++.. ...++.+++|+.+.+..+.. +.......+..+++|+.|++. .+. .+..+++|++
T Consensus 199 ~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~--l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 276 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM--LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 276 (336)
T ss_dssp EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT--CCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred EEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc--CCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCE
Confidence 999988731 12345688999998876521 111222345678999999997 122 3567889999
Q ss_pred EEEEcCCchhhhHHHHHHHHhcccccccc
Q 019478 310 FRVVNNFLCFCLILLLFLRKICNSHNVSC 338 (340)
Q Consensus 310 L~l~~~~~~~c~~l~~~~l~~cp~~~~~~ 338 (340)
|++.++.... ....+.+.+|.++..|
T Consensus 277 L~l~~~i~~~---~~~~l~~~l~~L~l~~ 302 (336)
T 2ast_B 277 LQVFGIVPDG---TLQLLKEALPHLQINC 302 (336)
T ss_dssp EECTTSSCTT---CHHHHHHHSTTSEESC
T ss_pred EeccCccCHH---HHHHHHhhCcceEEec
Confidence 9998752111 1112235677766543
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=1.2e-18 Score=168.75 Aligned_cols=270 Identities=14% Similarity=0.169 Sum_probs=149.9
Q ss_pred CCCChHHHHHHHhcC-ChHHHHHHHHhhhhhhhhccccc-eeEecccccccccCCCchhhHHhHHHHHHHHHHHHhhcCC
Q 019478 22 SRLPDEILVNIISRL-AVREAARTSVLSSRWKYLWTFTT-CLNFSALKMLWNVKKDPATLEEERYNYINWVNDVLDSHMG 99 (340)
Q Consensus 22 s~LPd~il~~Ils~L-~~~d~~r~~~vsk~W~~lw~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~ 99 (340)
+.||||+|.+||+|| +.+|+++++.|||+|++++...+ .+.+... +. .....++...+.
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~-~~------------------~~~~~~~~~~~~ 74 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALC-YT------------------ATPDRLSRRFPN 74 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCG-GG------------------SCHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeec-cc------------------cChHHHHHhCCC
Confidence 479999999999999 79999999999999999854322 1222211 11 112334444433
Q ss_pred CceeEEEEEEEeC--------CCCchhHHHHHHHHHh--CCCeEEEEEecCCCCCCCCCCceeeecCCceEeCCCCCCCC
Q 019478 100 LCINEFRLCFELR--------NSHGSFITHWIFTALA--KKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLS 169 (340)
Q Consensus 100 ~~l~~l~l~~~~~--------~~~~~~~~~w~~~~~~--~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~L~~~~~~~~ 169 (340)
++.+++..+.. .........|+..... +++++|++..+.... .....+. .
T Consensus 75 --L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~-----~~~~~l~-------------~ 134 (592)
T 3ogk_B 75 --LRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSD-----LDLDRLA-------------K 134 (592)
T ss_dssp --CSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCH-----HHHHHHH-------------H
T ss_pred --CeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecH-----HHHHHHH-------------H
Confidence 99999865311 1223344567777664 589999997553210 0011111 1
Q ss_pred CCCC-CceEEeeeEE-ecHHHHHHHHhcCccceEEeeeecCCcceE------EEeccCCCcceEEEEecCCce-------
Q 019478 170 NIKS-LRSLCLDAVN-VSGEVLEFFIYSCPLLARLRVVFSLDLLSL------KVVGSSVKLKYLDICYCYFME------- 234 (340)
Q Consensus 170 ~~~~-L~~L~L~~~~-i~~~~l~~lls~cp~Le~L~L~~c~~~~~l------~i~~~~~~L~~L~l~~c~~l~------- 234 (340)
.+++ |++|+|.++. +++.++..++.+||+|++|+|.+|. ++.. .+...+++|++|.+.++. ++
T Consensus 135 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l 212 (592)
T 3ogk_B 135 ARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDL 212 (592)
T ss_dssp HHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHH
T ss_pred hccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHH
Confidence 2444 7888887765 6667777777778888888887774 1110 011233666777665443 11
Q ss_pred -EEEEECCceeEEEEeccce---eeecCCCcccceEEEeeccCc-----------------------hhhhhhhhhhccC
Q 019478 235 -EVEISAPSVRSFKYYGPEI---KLRMENVPQLLDISIGGGYGV-----------------------RMKHAISPIMSYF 287 (340)
Q Consensus 235 -~l~i~~p~L~~l~l~~~~~---~~~~~~~~~L~~l~l~~~~~~-----------------------~~~~~~~~ll~~~ 287 (340)
.+...+|+|++|++.++.. +-.++.+++|+++.+...... .....+..++..+
T Consensus 213 ~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~ 292 (592)
T 3ogk_B 213 ETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA 292 (592)
T ss_dssp HHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGG
T ss_pred HHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhc
Confidence 0111346666666655421 111333444555544321000 0012344556677
Q ss_pred CCcceEEEE--------cccCCcCCCcceEEEEEcCCchhhhHHHHHHHHhccccc
Q 019478 288 HQLETLELG--------FVLNAVSILNLKCFRVVNNFLCFCLILLLFLRKICNSHN 335 (340)
Q Consensus 288 ~~L~~L~l~--------~~~~~~~f~~L~~L~l~~~~~~~c~~l~~~~l~~cp~~~ 335 (340)
++|++|++. ....+..+++|++|++..+.. ........+.||+++
T Consensus 293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~---~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIG---DRGLEVLAQYCKQLK 345 (592)
T ss_dssp GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGH---HHHHHHHHHHCTTCC
T ss_pred CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccC---HHHHHHHHHhCCCCC
Confidence 788888876 112346777888888873211 112233456777754
No 4
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.89 E-value=8.9e-10 Score=70.40 Aligned_cols=39 Identities=33% Similarity=0.428 Sum_probs=33.7
Q ss_pred CCcCCCCChHHHHHHHhcCChHHHHHHHHhhhhhhhhcc
Q 019478 18 VDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWT 56 (340)
Q Consensus 18 ~d~~s~LPd~il~~Ils~L~~~d~~r~~~vsk~W~~lw~ 56 (340)
...++.||+|++.+||+||+.+|+++++.|||+|+.+..
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 456899999999999999999999999999999997643
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.83 E-value=6.1e-10 Score=99.75 Aligned_cols=146 Identities=18% Similarity=0.244 Sum_probs=102.1
Q ss_pred CCCCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEE--E--------eccCCCcceEEEEecCC
Q 019478 163 RSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLK--V--------VGSSVKLKYLDICYCYF 232 (340)
Q Consensus 163 ~~~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~--i--------~~~~~~L~~L~l~~c~~ 232 (340)
.+|..+..+++|++|+|.++.+. .+..-+..+++|++|++.+|...+.+. + -..+++|+.|.++++.
T Consensus 118 ~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~- 194 (328)
T 4fcg_A 118 ELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG- 194 (328)
T ss_dssp CCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-
T ss_pred chhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-
Confidence 34455678999999999988765 333346789999999999986543211 0 0124899999999886
Q ss_pred ceEEEE---ECCceeEEEEecccee---eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------ccc
Q 019478 233 MEEVEI---SAPSVRSFKYYGPEIK---LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVL 299 (340)
Q Consensus 233 l~~l~i---~~p~L~~l~l~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~ 299 (340)
++.+.- ..++|+.|+++++... -.++.+++|+.+++..+.. ...+...+.++++|+.|++. +|.
T Consensus 195 l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~---~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 195 IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA---LRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTT---CCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcc---hhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence 543321 2488999999887432 2356788899888875411 11233446688999999987 566
Q ss_pred CCcCCCcceEEEEEc
Q 019478 300 NAVSILNLKCFRVVN 314 (340)
Q Consensus 300 ~~~~f~~L~~L~l~~ 314 (340)
.+..+++|++|++.+
T Consensus 272 ~~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 272 DIHRLTQLEKLDLRG 286 (328)
T ss_dssp TGGGCTTCCEEECTT
T ss_pred hhhcCCCCCEEeCCC
Confidence 677888999999987
No 6
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.78 E-value=3.5e-08 Score=95.20 Aligned_cols=38 Identities=24% Similarity=0.186 Sum_probs=24.2
Q ss_pred CCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeee
Q 019478 168 LSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVV 205 (340)
Q Consensus 168 ~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~ 205 (340)
...+++|++|+|.++.+++..+..++..||+|++|++.
T Consensus 289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 34566677777766666666665566666666666665
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.72 E-value=1e-08 Score=91.78 Aligned_cols=217 Identities=15% Similarity=0.085 Sum_probs=130.7
Q ss_pred HHHHhhcCCCceeEEEEEEEeCCCCchhHHHHHHHHHhCCCeEEEEEecCCCCCCCCCCceeeecCC-ceEeC-----CC
Q 019478 91 NDVLDSHMGLCINEFRLCFELRNSHGSFITHWIFTALAKKVQKLELNLHPVGGGFWPPLELYAFPPE-CLKLF-----RS 164 (340)
Q Consensus 91 ~~~l~~~~~~~l~~l~l~~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~-~L~L~-----~~ 164 (340)
...+.......++.+++....-...+. .+.. -.++++|++....... + +.....++.- +|.|+ .+
T Consensus 72 ~~~l~~~~~~~l~~L~L~~n~l~~lp~----~l~~--l~~L~~L~L~~n~l~~-l--p~~~~~l~~L~~L~Ls~n~l~~l 142 (328)
T 4fcg_A 72 ADLLEDATQPGRVALELRSVPLPQFPD----QAFR--LSHLQHMTIDAAGLME-L--PDTMQQFAGLETLTLARNPLRAL 142 (328)
T ss_dssp HHHHHHHTSTTCCEEEEESSCCSSCCS----CGGG--GTTCSEEEEESSCCCC-C--CSCGGGGTTCSEEEEESCCCCCC
T ss_pred HHHHhcccccceeEEEccCCCchhcCh----hhhh--CCCCCEEECCCCCccc-h--hHHHhccCCCCEEECCCCccccC
Confidence 334444344568888885432211111 1111 3578999987654321 1 1111222211 66665 56
Q ss_pred CCCCCCCCCCceEEeeeEEecHH---HH-----HHHHhcCccceEEeeeecCCcceEEEe---ccCCCcceEEEEecCCc
Q 019478 165 PRTLSNIKSLRSLCLDAVNVSGE---VL-----EFFIYSCPLLARLRVVFSLDLLSLKVV---GSSVKLKYLDICYCYFM 233 (340)
Q Consensus 165 ~~~~~~~~~L~~L~L~~~~i~~~---~l-----~~lls~cp~Le~L~L~~c~~~~~l~i~---~~~~~L~~L~l~~c~~l 233 (340)
|..+.++++|++|+|.++.+... .+ ...+.++++|++|++.++. ++ .++ ..+++|+.|.++++. +
T Consensus 143 p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~--~lp~~l~~l~~L~~L~L~~N~-l 218 (328)
T 4fcg_A 143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IR--SLPASIANLQNLKSLKIRNSP-L 218 (328)
T ss_dssp CGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CC--CCCGGGGGCTTCCEEEEESSC-C
T ss_pred cHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cC--cchHhhcCCCCCCEEEccCCC-C
Confidence 66678899999999998753221 00 0012348999999999985 33 222 244789999999887 4
Q ss_pred eEEEE---ECCceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------ccc
Q 019478 234 EEVEI---SAPSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVL 299 (340)
Q Consensus 234 ~~l~i---~~p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~ 299 (340)
..+.- ..++|+.|+++++.. +..++.+++|+.+++..+.. ...+...+.++++|+.|++. +|.
T Consensus 219 ~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~---~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 219 SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN---LLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp CCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT---CCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred CcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc---hhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 44321 248999999998632 33467789999998876411 11223345789999999998 677
Q ss_pred CCcCCCcceEEEEEcCCchhhhHH
Q 019478 300 NAVSILNLKCFRVVNNFLCFCLIL 323 (340)
Q Consensus 300 ~~~~f~~L~~L~l~~~~~~~c~~l 323 (340)
.+..+++|+.+.+..+....+...
T Consensus 296 ~l~~L~~L~~l~l~~~~~~~l~~~ 319 (328)
T 4fcg_A 296 LIAQLPANCIILVPPHLQAQLDQH 319 (328)
T ss_dssp GGGGSCTTCEEECCGGGSCC----
T ss_pred HHhhccCceEEeCCHHHHHHHhhh
Confidence 788888888888877555555444
No 8
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.55 E-value=3.9e-09 Score=94.45 Aligned_cols=174 Identities=12% Similarity=0.098 Sum_probs=123.4
Q ss_pred HHHHHHHhCCCeEEEEEecCCCCCCCCCCceeeecCCceEeCCCCCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccce
Q 019478 121 HWIFTALAKKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLA 200 (340)
Q Consensus 121 ~w~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~L~~~~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le 200 (340)
..+.....++++.+++...... ..+.....+++|++|+|.++.+++.++..++..||+|+
T Consensus 62 ~~~~~~~~~~l~~L~l~~n~l~--------------------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 62 DVTGRLLSQGVIAFRCPRSFMD--------------------QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp HHHHHHHHTTCSEEECTTCEEC--------------------SCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred HHHHhhhhccceEEEcCCcccc--------------------ccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 3455555677888876432211 22223457899999999999999888999999999999
Q ss_pred EEeeeecCCcce--EEEeccCCCcceEEEEecCCceEE-----EEECCceeEEEEecc-cee-----eecCCCc-ccceE
Q 019478 201 RLRVVFSLDLLS--LKVVGSSVKLKYLDICYCYFMEEV-----EISAPSVRSFKYYGP-EIK-----LRMENVP-QLLDI 266 (340)
Q Consensus 201 ~L~L~~c~~~~~--l~i~~~~~~L~~L~l~~c~~l~~l-----~i~~p~L~~l~l~~~-~~~-----~~~~~~~-~L~~l 266 (340)
+|++.+|. ++. ...-..+++|++|.+++|..+++. .-..|+|++|+++++ ... ..++.++ +|+++
T Consensus 122 ~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 122 NLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp EEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred EEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 99999995 321 111123589999999999655531 123699999999988 332 2356788 99999
Q ss_pred EEeeccCchhhhhhhhhhccCCCcceEEEE--------cccCCcCCCcceEEEEEcC
Q 019478 267 SIGGGYGVRMKHAISPIMSYFHQLETLELG--------FVLNAVSILNLKCFRVVNN 315 (340)
Q Consensus 267 ~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~--------~~~~~~~f~~L~~L~l~~~ 315 (340)
++..+.....+..+...+..+++|+.|++. .+..+..+++|++|++.++
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 997652111124556677899999999997 2345667899999999875
No 9
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.43 E-value=1.6e-08 Score=81.26 Aligned_cols=64 Identities=5% Similarity=0.028 Sum_probs=43.0
Q ss_pred CCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEec--c----CCCcceEEEEecCCceE
Q 019478 171 IKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVG--S----SVKLKYLDICYCYFMEE 235 (340)
Q Consensus 171 ~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~--~----~~~L~~L~l~~c~~l~~ 235 (340)
-.+|+.|+|+++.++|+++..+ +.|++|++|+|.+|..+++-.+.. . +++|++|++++|+.+++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred CceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 3567888888777888777765 678888888888887766432221 1 23577777777765554
No 10
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.41 E-value=3.5e-07 Score=88.12 Aligned_cols=75 Identities=13% Similarity=0.130 Sum_probs=41.2
Q ss_pred CcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE--------cccCCcCCCcceEEEEEcCCchhhhHHHHHHHHhc
Q 019478 260 VPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG--------FVLNAVSILNLKCFRVVNNFLCFCLILLLFLRKIC 331 (340)
Q Consensus 260 ~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~--------~~~~~~~f~~L~~L~l~~~~~~~c~~l~~~~l~~c 331 (340)
+++|+.+.+..+.- .+..+..+..++++|+.|++. .......+++|++|++.++.. .+.....+.+.+
T Consensus 455 ~~~L~~L~L~~~~i--~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~--~~~~~~~l~~~l 530 (594)
T 2p1m_B 455 AKKMEMLSVAFAGD--SDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV--SFGACKLLGQKM 530 (594)
T ss_dssp CTTCCEEEEESCCS--SHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC--BHHHHHHHHHHC
T ss_pred chhccEeeccCCCC--cHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC--CHHHHHHHHHhC
Confidence 45566666654311 123344455677788888877 122344577888888877544 222222244677
Q ss_pred ccccccc
Q 019478 332 NSHNVSC 338 (340)
Q Consensus 332 p~~~~~~ 338 (340)
|++++.+
T Consensus 531 p~l~i~~ 537 (594)
T 2p1m_B 531 PKLNVEV 537 (594)
T ss_dssp TTEEEEE
T ss_pred CCCEEEE
Confidence 7765443
No 11
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.36 E-value=1.5e-07 Score=75.54 Aligned_cols=67 Identities=12% Similarity=0.111 Sum_probs=56.4
Q ss_pred CCCCCCceEEeeeEE-ecHHHHHHHHhc---CccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceE
Q 019478 169 SNIKSLRSLCLDAVN-VSGEVLEFFIYS---CPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEE 235 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~-i~~~~l~~lls~---cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~ 235 (340)
.+|++|+.|+|.+|. ++|+++..+... |+.|++|+|++|..+++-.+. ..+++|++|.+++|+.+++
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 589999999999997 999999998873 889999999999988753222 3568999999999987665
No 12
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.32 E-value=9.1e-07 Score=79.67 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=32.9
Q ss_pred hhhccCCCcceEEEE------cccC-CcCCCcceEEEEEcC-CchhhhHHHHH
Q 019478 282 PIMSYFHQLETLELG------FVLN-AVSILNLKCFRVVNN-FLCFCLILLLF 326 (340)
Q Consensus 282 ~ll~~~~~L~~L~l~------~~~~-~~~f~~L~~L~l~~~-~~~~c~~l~~~ 326 (340)
..+.++++|+.|++. ++.. +..+++|++|++.++ ..+.||.+..+
T Consensus 271 ~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l 323 (353)
T 2z80_A 271 KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 323 (353)
T ss_dssp HHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHH
T ss_pred HHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHH
Confidence 346688899999998 4444 467889999999996 44567766544
No 13
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.31 E-value=6.3e-08 Score=84.59 Aligned_cols=148 Identities=14% Similarity=0.071 Sum_probs=81.3
Q ss_pred CCCCCCCCCCceEEeeeEE-ecHHHHHHHHhcCccceEEeeeecCCcceEEE--eccCCCcceEEEEecCCceEEEE---
Q 019478 165 PRTLSNIKSLRSLCLDAVN-VSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV--VGSSVKLKYLDICYCYFMEEVEI--- 238 (340)
Q Consensus 165 ~~~~~~~~~L~~L~L~~~~-i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~l~i--- 238 (340)
+..+.++++|++|+|.+.. +..-. ...+..+++|++|++.++.- +.+.. -..+++|+.|.++++. ++.+..
T Consensus 73 ~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~ 149 (285)
T 1ozn_A 73 AAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNA-LQALPDDTF 149 (285)
T ss_dssp TTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred HhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcCCCEEECCCCcC-CEECHhHhhCCcCCCEEECCCCc-ccccCHhHh
Confidence 3445566777777776653 32210 11244566777777766641 11100 1123677777777665 333321
Q ss_pred -ECCceeEEEEecccee-e---ecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------c-ccCCcCCCc
Q 019478 239 -SAPSVRSFKYYGPEIK-L---RMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------F-VLNAVSILN 306 (340)
Q Consensus 239 -~~p~L~~l~l~~~~~~-~---~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~-~~~~~~f~~ 306 (340)
..++|+.|+++++... + .+..+++|+.+.+.... +.......+.++++|+.|++. + +..+..+++
T Consensus 150 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR---VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred ccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc---ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence 2467777777766331 1 24556777777775441 111223345577888888887 1 233566778
Q ss_pred ceEEEEEcCCch
Q 019478 307 LKCFRVVNNFLC 318 (340)
Q Consensus 307 L~~L~l~~~~~~ 318 (340)
|++|++.++...
T Consensus 227 L~~L~l~~N~~~ 238 (285)
T 1ozn_A 227 LQYLRLNDNPWV 238 (285)
T ss_dssp CCEEECCSSCEE
T ss_pred cCEEeccCCCcc
Confidence 888888875443
No 14
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.30 E-value=7.4e-08 Score=83.65 Aligned_cols=155 Identities=14% Similarity=0.142 Sum_probs=108.4
Q ss_pred CCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE--eccCCCcceEEEEecCCceEEEE----ECC
Q 019478 168 LSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV--VGSSVKLKYLDICYCYFMEEVEI----SAP 241 (340)
Q Consensus 168 ~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~l~i----~~p 241 (340)
+..+++|++|+|.++.+.+- . -+..+++|++|++.+|. ++.+.- -..+++|+.|.+.++. ++.+.- ..+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 133 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLT 133 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCT
T ss_pred cccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCC
Confidence 46789999999988776542 2 35679999999999885 332111 1234789999999886 554432 248
Q ss_pred ceeEEEEecccee-e---ecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcceEE
Q 019478 242 SVRSFKYYGPEIK-L---RMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLKCF 310 (340)
Q Consensus 242 ~L~~l~l~~~~~~-~---~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~~L 310 (340)
+|++|.++++... + .++.+++|+.+.+..+. +.......+.++++|+.|++. .+..+..+++|++|
T Consensus 134 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (272)
T 3rfs_A 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ---LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210 (272)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCCEEECCCCccCccCHHHhccCccCCEEECCCCC---cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEE
Confidence 9999999888432 2 25678999999987652 112233446789999999998 23446788999999
Q ss_pred EEEcC-CchhhhHHHHHHHHh
Q 019478 311 RVVNN-FLCFCLILLLFLRKI 330 (340)
Q Consensus 311 ~l~~~-~~~~c~~l~~~~l~~ 330 (340)
++.++ ..+.||.++.+.+..
T Consensus 211 ~l~~N~~~~~~~~l~~l~~~~ 231 (272)
T 3rfs_A 211 WLHDNPWDCTCPGIRYLSEWI 231 (272)
T ss_dssp ECCSSCBCCCTTTTHHHHHHH
T ss_pred EccCCCccccCcHHHHHHHHH
Confidence 99986 445688887776543
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.27 E-value=1.5e-07 Score=88.29 Aligned_cols=152 Identities=18% Similarity=0.169 Sum_probs=84.1
Q ss_pred CCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE--eccCCCcceEEEEecCCceEEEE----
Q 019478 165 PRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV--VGSSVKLKYLDICYCYFMEEVEI---- 238 (340)
Q Consensus 165 ~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~l~i---- 238 (340)
+..+.++++|+.|+|.++.++.-. ...+..+++|+.|++.++.- ..+.- -..+++|+.|.+.+|..+..+..
T Consensus 145 ~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 222 (477)
T 2id5_A 145 HRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNI-NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222 (477)
T ss_dssp TTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCCC-CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT
T ss_pred hhhccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCcC-cEeChhhcccCcccceeeCCCCccccccCccccc
Confidence 345678899999999888765321 23467789999999988742 21100 01235677777776654333221
Q ss_pred -----------------------ECCceeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcc
Q 019478 239 -----------------------SAPSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLE 291 (340)
Q Consensus 239 -----------------------~~p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~ 291 (340)
..++|+.|+++++... ..+..+++|+++.+... .+.......+.++++|+
T Consensus 223 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n---~l~~~~~~~~~~l~~L~ 299 (477)
T 2id5_A 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG---QLAVVEPYAFRGLNYLR 299 (477)
T ss_dssp TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSS---CCSEECTTTBTTCTTCC
T ss_pred CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCC---ccceECHHHhcCcccCC
Confidence 1244555555444221 11344555555555433 11111223355677778
Q ss_pred eEEEE------c-ccCCcCCCcceEEEEEcCCch-hhh
Q 019478 292 TLELG------F-VLNAVSILNLKCFRVVNNFLC-FCL 321 (340)
Q Consensus 292 ~L~l~------~-~~~~~~f~~L~~L~l~~~~~~-~c~ 321 (340)
.|++. + +..+..+++|++|++.++... .|.
T Consensus 300 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 300 VLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp EEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred EEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 77776 2 233456778888888776544 343
No 16
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.24 E-value=1.5e-07 Score=77.49 Aligned_cols=140 Identities=13% Similarity=0.125 Sum_probs=92.5
Q ss_pred CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceE--E-EE-ECCcee
Q 019478 169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEE--V-EI-SAPSVR 244 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~--l-~i-~~p~L~ 244 (340)
..+++|+.|++.+..+.+ +. -+..+++|++|++.+| .+..+..-..+++|+.|.++++. ++. . .+ ..|+|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD--LT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCccC--hH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCc-cCcccChhhcCCCCCC
Confidence 467788888888776653 12 1567888888888888 33333222344788888888876 332 1 11 248888
Q ss_pred EEEEeccce----eeecCCCcccceEEEeecc-CchhhhhhhhhhccCCCcceEEEE---c--ccCCcCCCcceEEEEEc
Q 019478 245 SFKYYGPEI----KLRMENVPQLLDISIGGGY-GVRMKHAISPIMSYFHQLETLELG---F--VLNAVSILNLKCFRVVN 314 (340)
Q Consensus 245 ~l~l~~~~~----~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~ll~~~~~L~~L~l~---~--~~~~~~f~~L~~L~l~~ 314 (340)
.|.++++.. .-.++.+++|+++.+..+. -.. + ..+.++++|+.|++. + ...+..+++|++|++.+
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~----~-~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD----I-MPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFS 190 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC----C-GGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECB
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc----c-HhhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeC
Confidence 888887743 2236788999999987653 211 1 246789999999997 1 12567888999999988
Q ss_pred CCch
Q 019478 315 NFLC 318 (340)
Q Consensus 315 ~~~~ 318 (340)
+.++
T Consensus 191 N~i~ 194 (197)
T 4ezg_A 191 QTIG 194 (197)
T ss_dssp C---
T ss_pred cccC
Confidence 6543
No 17
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.21 E-value=2.4e-07 Score=86.46 Aligned_cols=148 Identities=14% Similarity=0.140 Sum_probs=101.1
Q ss_pred CCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceEEEE--ECC
Q 019478 166 RTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEEVEI--SAP 241 (340)
Q Consensus 166 ~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~l~i--~~p 241 (340)
..+.++++|++|+|.+..+..- -...+..+++|+.|++.+|..+..+... ..+++|+.|.++++. ++.+.- ..+
T Consensus 141 ~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~ 218 (452)
T 3zyi_A 141 GAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPNLTPLV 218 (452)
T ss_dssp TTSSSCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCCCTTCT
T ss_pred hhhcccCCCCEEECCCCCccee-CHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccccccccc
Confidence 3467789999999988765421 1123567899999999988766653221 234789999998876 444321 247
Q ss_pred ceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------c-ccCCcCCCcceEE
Q 019478 242 SVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------F-VLNAVSILNLKCF 310 (340)
Q Consensus 242 ~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~-~~~~~~f~~L~~L 310 (340)
+|+.|+++++.. +..+.++++|+.+.+.... +.......+.++++|+.|+|. + +..+..+++|++|
T Consensus 219 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 295 (452)
T 3zyi_A 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ---VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL 295 (452)
T ss_dssp TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEE
T ss_pred cccEEECcCCcCcccCcccccCccCCCEEEeCCCc---CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEE
Confidence 899999988743 2346788899998886541 122223446789999999998 2 3446678899999
Q ss_pred EEEcCCch
Q 019478 311 RVVNNFLC 318 (340)
Q Consensus 311 ~l~~~~~~ 318 (340)
++.++...
T Consensus 296 ~L~~Np~~ 303 (452)
T 3zyi_A 296 HLHHNPWN 303 (452)
T ss_dssp ECCSSCEE
T ss_pred EccCCCcC
Confidence 99986443
No 18
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.18 E-value=3.1e-07 Score=80.98 Aligned_cols=142 Identities=13% Similarity=0.155 Sum_probs=72.6
Q ss_pred CCCCCCCceEEeeeEEecHHH-HHHHHhcCccceEEeeeecCCcceEE-EeccCCCcceEEEEecCCceEEEE-----EC
Q 019478 168 LSNIKSLRSLCLDAVNVSGEV-LEFFIYSCPLLARLRVVFSLDLLSLK-VVGSSVKLKYLDICYCYFMEEVEI-----SA 240 (340)
Q Consensus 168 ~~~~~~L~~L~L~~~~i~~~~-l~~lls~cp~Le~L~L~~c~~~~~l~-i~~~~~~L~~L~l~~c~~l~~l~i-----~~ 240 (340)
+.++++|++|+|.+..+...+ .......+++|++|++.++. +..+. .-..+++|++|.+.++. ++.+.. ..
T Consensus 48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l 125 (306)
T 2z66_A 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSL 125 (306)
T ss_dssp TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTC
T ss_pred hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCc-ccccccchhhhhc
Confidence 578899999999877654211 01123468899999998885 22221 11234777777776654 222111 12
Q ss_pred CceeEEEEecccee----eecCCCcccceEEEeeccCchhhh-hhhhhhccCCCcceEEEE-------cccCCcCCCcce
Q 019478 241 PSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKH-AISPIMSYFHQLETLELG-------FVLNAVSILNLK 308 (340)
Q Consensus 241 p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~-~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~ 308 (340)
++|+.|.++++... ..++.+++|+.+.+... .+.. .....+..+++|+.|++. .+..+..+++|+
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n---~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 202 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN---SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC---EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCC---ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCC
Confidence 56666666655321 12344555665555432 1000 122333445555555554 123334444555
Q ss_pred EEEEEc
Q 019478 309 CFRVVN 314 (340)
Q Consensus 309 ~L~l~~ 314 (340)
+|++.+
T Consensus 203 ~L~L~~ 208 (306)
T 2z66_A 203 VLNMSH 208 (306)
T ss_dssp EEECTT
T ss_pred EEECCC
Confidence 555544
No 19
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.18 E-value=3.5e-07 Score=85.31 Aligned_cols=146 Identities=14% Similarity=0.019 Sum_probs=100.7
Q ss_pred CCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEec----cCCCcceEEEEecCCceEEEEE--
Q 019478 166 RTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVG----SSVKLKYLDICYCYFMEEVEIS-- 239 (340)
Q Consensus 166 ~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~----~~~~L~~L~l~~c~~l~~l~i~-- 239 (340)
..+.++++|++|+|.+..+..- ....+..+++|++|+|.++. +.. ++. .+++|+.|.+.+|..++.+...
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~--~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~ 192 (452)
T 3zyi_A 117 GAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLRELWLRNNP-IES--IPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCEEECCSCC-CCE--ECTTTTTTCTTCCEEECCCCTTCCEECTTTT
T ss_pred hhccCcccCCEEECCCCcCCcc-ChhhhcccCCCCEEECCCCC-cce--eCHhHHhcCCcccEEeCCCCCCccccChhhc
Confidence 4567888999999987765421 11224568889999998885 332 221 3478999999888777766532
Q ss_pred --CCceeEEEEecccee--eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcce
Q 019478 240 --APSVRSFKYYGPEIK--LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLK 308 (340)
Q Consensus 240 --~p~L~~l~l~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~ 308 (340)
.++|+.|+++++... -.+..+++|+.+++... .+.......+.++++|+.|.+. .+..+..+++|+
T Consensus 193 ~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N---~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGN---HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269 (452)
T ss_dssp TTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTS---CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cCCCCCCEEECCCCcccccccccccccccEEECcCC---cCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence 488999998877432 13566788888888654 1122233456789999999997 355677889999
Q ss_pred EEEEEcCCch
Q 019478 309 CFRVVNNFLC 318 (340)
Q Consensus 309 ~L~l~~~~~~ 318 (340)
+|++.++.+.
T Consensus 270 ~L~L~~N~l~ 279 (452)
T 3zyi_A 270 ELNLAHNNLS 279 (452)
T ss_dssp EEECCSSCCS
T ss_pred EEECCCCcCC
Confidence 9999985443
No 20
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.16 E-value=7.3e-07 Score=84.06 Aligned_cols=95 Identities=14% Similarity=0.106 Sum_probs=47.4
Q ss_pred CCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEE-CCceeEE
Q 019478 168 LSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEIS-APSVRSF 246 (340)
Q Consensus 168 ~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~-~p~L~~l 246 (340)
+..+++|++|+|.++.+++.. . +..+++|++|+|.++. ++.+. ..++|+.|.++++. +..+... .|+|+.|
T Consensus 54 ~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~-l~~l~---~~~~L~~L~L~~N~-l~~~~~~~l~~L~~L 125 (487)
T 3oja_A 54 LAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQELL---VGPSIETLHAANNN-ISRVSCSRGQGKKNI 125 (487)
T ss_dssp GTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEECCSSE-EEEEE---ECTTCCEEECCSSC-CCCEEECCCSSCEEE
T ss_pred HhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEecCCc-CCCCC---CCCCcCEEECcCCc-CCCCCccccCCCCEE
Confidence 346666666666655433210 0 4556666666666663 22221 11566666666654 3333222 3556666
Q ss_pred EEeccce----eeecCCCcccceEEEee
Q 019478 247 KYYGPEI----KLRMENVPQLLDISIGG 270 (340)
Q Consensus 247 ~l~~~~~----~~~~~~~~~L~~l~l~~ 270 (340)
.++++.. +..++.+++|+.+++..
T Consensus 126 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 153 (487)
T 3oja_A 126 YLANNKITMLRDLDEGCRSRVQYLDLKL 153 (487)
T ss_dssp ECCSSCCCSGGGBCGGGGSSEEEEECTT
T ss_pred ECCCCCCCCCCchhhcCCCCCCEEECCC
Confidence 6655532 22234455555555543
No 21
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.16 E-value=2.9e-07 Score=85.59 Aligned_cols=147 Identities=13% Similarity=0.166 Sum_probs=101.5
Q ss_pred CCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceEEEE--ECCc
Q 019478 167 TLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEEVEI--SAPS 242 (340)
Q Consensus 167 ~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~l~i--~~p~ 242 (340)
.+.++++|++|+|.+..+..- -...+..+++|++|++.+|..+..+... ..+++|+.|.++++. ++.+.- ..++
T Consensus 131 ~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~ 208 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIK 208 (440)
T ss_dssp TSCSCSSCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSS
T ss_pred HhhccccCceeeCCCCccccc-CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-CccccccCCCcc
Confidence 467889999999988765421 0112567899999999988766543221 234789999998886 544321 2478
Q ss_pred eeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------c-ccCCcCCCcceEEE
Q 019478 243 VRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------F-VLNAVSILNLKCFR 311 (340)
Q Consensus 243 L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~-~~~~~~f~~L~~L~ 311 (340)
|+.|+++++... ..+.++++|+++.+... .+.......+.++++|+.|+|. + +..+..+++|+.|+
T Consensus 209 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n---~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 285 (440)
T 3zyj_A 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS---QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH 285 (440)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTC---CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEE
T ss_pred cCEEECCCCccCccChhhhccCccCCEEECCCC---ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEE
Confidence 999999887432 24677889999888654 1122223456789999999998 2 34466789999999
Q ss_pred EEcCCch
Q 019478 312 VVNNFLC 318 (340)
Q Consensus 312 l~~~~~~ 318 (340)
+.+|...
T Consensus 286 L~~Np~~ 292 (440)
T 3zyj_A 286 LHHNPWN 292 (440)
T ss_dssp CCSSCEE
T ss_pred cCCCCcc
Confidence 9986543
No 22
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.14 E-value=8.9e-07 Score=78.56 Aligned_cols=75 Identities=13% Similarity=0.073 Sum_probs=32.0
Q ss_pred CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEE-CCceeEEE
Q 019478 169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEIS-APSVRSFK 247 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~-~p~L~~l~ 247 (340)
..+++|++|+|.++.+.... . +..+++|++|++.++. ++.+. ..++|+.|.++++. +..+... .++|+.|.
T Consensus 55 ~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~-l~~l~---~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~ 126 (317)
T 3o53_A 55 APFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELL---VGPSIETLHAANNN-ISRVSCSRGQGKKNIY 126 (317)
T ss_dssp TTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSE-EEEEE---ECTTCCEEECCSSC-CSEEEECCCSSCEEEE
T ss_pred hCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCc-ccccc---CCCCcCEEECCCCc-cCCcCccccCCCCEEE
Confidence 34555555555544332110 0 3445555555555552 22211 11455555555543 3332222 24455555
Q ss_pred Eecc
Q 019478 248 YYGP 251 (340)
Q Consensus 248 l~~~ 251 (340)
++++
T Consensus 127 l~~N 130 (317)
T 3o53_A 127 LANN 130 (317)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 4444
No 23
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.12 E-value=2.8e-07 Score=81.56 Aligned_cols=174 Identities=12% Similarity=0.116 Sum_probs=95.4
Q ss_pred CCCeEEEEEecCCCCCCCCCCceeeecCC-ceEeC-----CCCCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEE
Q 019478 129 KKVQKLELNLHPVGGGFWPPLELYAFPPE-CLKLF-----RSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARL 202 (340)
Q Consensus 129 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~-~L~L~-----~~~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L 202 (340)
.++++|.+..+.... ......++.- .|.|+ .++. +..+++|++|+|.++.+.+- . -+..+++|++|
T Consensus 41 ~~L~~L~l~~~~i~~----l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L 112 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT----IEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV--S-AIAGLQSIKTL 112 (308)
T ss_dssp HTCCEEECTTSCCCC----CTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEE
T ss_pred CCcCEEEeeCCCccC----chhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEE
Confidence 478888875443221 0111111111 55554 2222 56677777777777665432 1 25567777777
Q ss_pred eeeecCCcceEEEeccCCCcceEEEEecCCceEEE-E-ECCceeEEEEecccee-e-ecCCCcccceEEEeeccCchhhh
Q 019478 203 RVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVE-I-SAPSVRSFKYYGPEIK-L-RMENVPQLLDISIGGGYGVRMKH 278 (340)
Q Consensus 203 ~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~-i-~~p~L~~l~l~~~~~~-~-~~~~~~~L~~l~l~~~~~~~~~~ 278 (340)
++.+|. ++.+.--..+++|+.|.++++. ++.+. + ..++|+.|.++++... + .+..+++|+.+.+....-..+.
T Consensus 113 ~l~~n~-l~~~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~- 189 (308)
T 1h6u_A 113 DLTSTQ-ITDVTPLAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS- 189 (308)
T ss_dssp ECTTSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-
T ss_pred ECCCCC-CCCchhhcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcCh-
Confidence 777774 2221111234677777777765 33321 1 2477777777766331 1 1566777777777654111111
Q ss_pred hhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEcCCch
Q 019478 279 AISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNNFLC 318 (340)
Q Consensus 279 ~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~~~ 318 (340)
. +..+++|+.|++. ++ .+..+++|++|++.++.+.
T Consensus 190 ---~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 190 ---P-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp ---G-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEE
T ss_pred ---h-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeee
Confidence 1 5577788888876 22 2556778888888774433
No 24
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.10 E-value=5.2e-07 Score=80.92 Aligned_cols=142 Identities=17% Similarity=0.220 Sum_probs=80.4
Q ss_pred CCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEE-E-ECCceeE
Q 019478 168 LSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVE-I-SAPSVRS 245 (340)
Q Consensus 168 ~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~-i-~~p~L~~ 245 (340)
+.++++|++|++.++.+.+-. . +..+++|+.|++.+|.....+..-..+++|+.|.+.+|. +..+. + ..++|+.
T Consensus 106 ~~~l~~L~~L~l~~n~i~~~~--~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~ 181 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNISDIS--P-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTPIANLTDLYS 181 (347)
T ss_dssp GTTCTTCSEEECTTSCCCCCG--G-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSE
T ss_pred HcCCCcCCEEECcCCcccCch--h-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchhhccCCCCCE
Confidence 456666666666665544311 1 455666666666666543322212234667777776665 22211 1 2467777
Q ss_pred EEEecccee-e-ecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEcCCc
Q 019478 246 FKYYGPEIK-L-RMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNNFL 317 (340)
Q Consensus 246 l~l~~~~~~-~-~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~~ 317 (340)
|+++++... + .+..+++|+.+.+....-.... .+..+++|+.|++. .+. +..+++|++|++.++.+
T Consensus 182 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 182 LSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT-----PVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQI 255 (347)
T ss_dssp EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-----GGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred EEccCCcccccccccCCCccceeecccCCCCCCc-----hhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCcc
Confidence 777766331 1 1455667777666544111101 15678888888887 222 66788889998888544
Q ss_pred hh
Q 019478 318 CF 319 (340)
Q Consensus 318 ~~ 319 (340)
..
T Consensus 256 ~~ 257 (347)
T 4fmz_A 256 SD 257 (347)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.09 E-value=5.8e-07 Score=86.90 Aligned_cols=72 Identities=15% Similarity=0.179 Sum_probs=38.0
Q ss_pred CceeEEEEecccee-----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE--------cccCCcCCCcc
Q 019478 241 PSVRSFKYYGPEIK-----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG--------FVLNAVSILNL 307 (340)
Q Consensus 241 p~L~~l~l~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~--------~~~~~~~f~~L 307 (340)
++|+.|.+.++... ..+..+++|+.+.+..+. +.......+.++++|+.|++. .+..+..+++|
T Consensus 399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 475 (606)
T 3vq2_A 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN---TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL 475 (606)
T ss_dssp TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC---CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CCCCeeECCCCccCCccChhhhhccccCCEEECcCCC---CCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC
Confidence 55555555544221 123445555555554331 111122345567777777775 24455667778
Q ss_pred eEEEEEcC
Q 019478 308 KCFRVVNN 315 (340)
Q Consensus 308 ~~L~l~~~ 315 (340)
++|++.++
T Consensus 476 ~~L~Ls~n 483 (606)
T 3vq2_A 476 TFLDLSKC 483 (606)
T ss_dssp CEEECTTS
T ss_pred CEEECCCC
Confidence 88877763
No 26
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.09 E-value=4.9e-07 Score=78.31 Aligned_cols=149 Identities=17% Similarity=0.167 Sum_probs=98.3
Q ss_pred CCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE--eccCCCcceEEEEecCCceEEEE----EC
Q 019478 167 TLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV--VGSSVKLKYLDICYCYFMEEVEI----SA 240 (340)
Q Consensus 167 ~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~l~i----~~ 240 (340)
.+.++++|++|+|.+..+..- -..++..+++|++|++.++. +..+.. -..+++|+.|.+.++. ++.+.. ..
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 132 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSL 132 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTC
T ss_pred HhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcC
Confidence 467889999999987765421 11234568899999998875 222111 1234788999998875 444332 24
Q ss_pred CceeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cc-cCCcCCCcceE
Q 019478 241 PSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FV-LNAVSILNLKC 309 (340)
Q Consensus 241 p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~-~~~~~f~~L~~ 309 (340)
++|++|+++++... ..++.+++|+++.+.... +.......+.++++|+.|++. ++ ..+..+++|+.
T Consensus 133 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 209 (270)
T 2o6q_A 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ---LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCCCEEECCCCcCCccCHhHccCCcccceeEecCCc---CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCE
Confidence 88999999887432 125678999999887551 111222345688999999997 23 34667889999
Q ss_pred EEEEcCCc-hhhh
Q 019478 310 FRVVNNFL-CFCL 321 (340)
Q Consensus 310 L~l~~~~~-~~c~ 321 (340)
|++.++.. +.|.
T Consensus 210 L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 210 LQLQENPWDCTCN 222 (270)
T ss_dssp EECCSSCBCCSSS
T ss_pred EEecCCCeeCCCc
Confidence 99998643 3443
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.09 E-value=6e-07 Score=80.54 Aligned_cols=176 Identities=23% Similarity=0.226 Sum_probs=114.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCceeeecCC-ceEeC-----CCCCCCCCCCCCceEEeeeEE-ecHHHHHHHHhcCccceE
Q 019478 129 KKVQKLELNLHPVGGGFWPPLELYAFPPE-CLKLF-----RSPRTLSNIKSLRSLCLDAVN-VSGEVLEFFIYSCPLLAR 201 (340)
Q Consensus 129 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~-~L~L~-----~~~~~~~~~~~L~~L~L~~~~-i~~~~l~~lls~cp~Le~ 201 (340)
+++++|.+..+.... ......++.- +|.+. ..+. +..+++|+.|++.++. +.+ +.. +..++.|++
T Consensus 88 ~~L~~L~L~~n~i~~----~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~--~~~-~~~l~~L~~ 159 (347)
T 4fmz_A 88 VKLTNLYIGTNKITD----ISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSD--LSP-LSNMTGLNY 159 (347)
T ss_dssp TTCCEEECCSSCCCC----CGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCC--CGG-GTTCTTCCE
T ss_pred CcCCEEEccCCcccC----chHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCccc--ccc-hhhCCCCcE
Confidence 578888886553221 1111111111 66666 2232 5789999999998874 322 111 678999999
Q ss_pred EeeeecCCcceEEEeccCCCcceEEEEecCCceEEE--EECCceeEEEEecccee--eecCCCcccceEEEeeccCchhh
Q 019478 202 LRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVE--ISAPSVRSFKYYGPEIK--LRMENVPQLLDISIGGGYGVRMK 277 (340)
Q Consensus 202 L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~--i~~p~L~~l~l~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~ 277 (340)
|++.+|.-..... -..+++|+.|.+++|. +.++. -..++|+.+.+.++... ..+..+++|+++.+..+.-....
T Consensus 160 L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~ 237 (347)
T 4fmz_A 160 LTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLS 237 (347)
T ss_dssp EECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred EEecCCCcCCchh-hccCCCCCEEEccCCc-ccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCc
Confidence 9999986322111 2345899999999886 44332 12588999999877432 12677899999998765221111
Q ss_pred hhhhhhhccCCCcceEEEE-----cccCCcCCCcceEEEEEcCCchh
Q 019478 278 HAISPIMSYFHQLETLELG-----FVLNAVSILNLKCFRVVNNFLCF 319 (340)
Q Consensus 278 ~~~~~ll~~~~~L~~L~l~-----~~~~~~~f~~L~~L~l~~~~~~~ 319 (340)
. +..+++|+.|++. ....+..+++|++|++.++.+..
T Consensus 238 ----~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~ 279 (347)
T 4fmz_A 238 ----P-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISD 279 (347)
T ss_dssp ----G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred ----c-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCC
Confidence 1 6789999999998 12346788899999999865544
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.07 E-value=3.2e-06 Score=77.13 Aligned_cols=140 Identities=19% Similarity=0.246 Sum_probs=75.3
Q ss_pred CCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEE-CCcee
Q 019478 166 RTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEIS-APSVR 244 (340)
Q Consensus 166 ~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~-~p~L~ 244 (340)
..+.++++|++|++.+..++.-. +..++.|+.|++.++. ++.+... ++|+.|.++++. +..+... .++|+
T Consensus 159 ~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n~-l~~~~~~---~~L~~L~l~~n~-l~~~~~~~~~~L~ 229 (390)
T 3o6n_A 159 DTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNL-LSTLAIP---IAVEELDASHNS-INVVRGPVNVELT 229 (390)
T ss_dssp TTTSSCTTCCEEECCSSCCSBCC----GGGCTTCSEEECCSSC-CSEEECC---SSCSEEECCSSC-CCEEECCCCSSCC
T ss_pred hhccCCCCCCEEECCCCcCCccc----cccccccceeeccccc-ccccCCC---CcceEEECCCCe-eeecccccccccc
Confidence 34567778888888776654422 3456777777777663 3332222 567777776665 4433222 25666
Q ss_pred EEEEecccee--eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEcCC
Q 019478 245 SFKYYGPEIK--LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNNF 316 (340)
Q Consensus 245 ~l~l~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~ 316 (340)
.|.+.++... -.++.+++|+++.+.... +.......+.++++|+.|.+. ++.....+++|++|++.++.
T Consensus 230 ~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 230 ILKLQHNNLTDTAWLLNYPGLVEVDLSYNE---LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 306 (390)
T ss_dssp EEECCSSCCCCCGGGGGCTTCSEEECCSSC---CCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC
T ss_pred EEECCCCCCcccHHHcCCCCccEEECCCCc---CCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc
Confidence 6666655321 124455666666665431 111122334456666666665 33334455666666666543
Q ss_pred c
Q 019478 317 L 317 (340)
Q Consensus 317 ~ 317 (340)
+
T Consensus 307 l 307 (390)
T 3o6n_A 307 L 307 (390)
T ss_dssp C
T ss_pred c
Confidence 3
No 29
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.07 E-value=2.5e-06 Score=75.60 Aligned_cols=99 Identities=16% Similarity=0.162 Sum_probs=71.6
Q ss_pred CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEECCceeEEEE
Q 019478 169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKY 248 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l 248 (340)
..+++|++|+|.++.+.+-. ...+..+++|++|++.++.-..... -..+++|+.|.++++. ++.+. ..|+|+.|.+
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~-~~~~L~~L~l 106 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL-VGPSIETLHA 106 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCC-HHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE-ECTTCCEEEC
T ss_pred ccCCCCCEEECcCCccCcCC-HHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc-CCCCcCEEEC
Confidence 46789999999988765421 2336789999999999986332223 3355899999999986 77665 3599999999
Q ss_pred eccce-eeecCCCcccceEEEeec
Q 019478 249 YGPEI-KLRMENVPQLLDISIGGG 271 (340)
Q Consensus 249 ~~~~~-~~~~~~~~~L~~l~l~~~ 271 (340)
+++.. ......+++|+.+.+...
T Consensus 107 ~~n~l~~~~~~~~~~L~~L~l~~N 130 (317)
T 3o53_A 107 ANNNISRVSCSRGQGKKNIYLANN 130 (317)
T ss_dssp CSSCCSEEEECCCSSCEEEECCSS
T ss_pred CCCccCCcCccccCCCCEEECCCC
Confidence 98753 334455677777776544
No 30
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.06 E-value=1.8e-06 Score=74.90 Aligned_cols=38 Identities=24% Similarity=0.606 Sum_probs=34.6
Q ss_pred CcCCCCChHHHHHHHhcCChHHHH-HHHHhhhhhhhhcc
Q 019478 19 DWISRLPDEILVNIISRLAVREAA-RTSVLSSRWKYLWT 56 (340)
Q Consensus 19 d~~s~LPd~il~~Ils~L~~~d~~-r~~~vsk~W~~lw~ 56 (340)
..+..||+|++.+||++||.++++ ++++|||+|+.+..
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVD 87 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHT
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhc
Confidence 467899999999999999999999 99999999998643
No 31
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.05 E-value=1.7e-06 Score=82.54 Aligned_cols=150 Identities=13% Similarity=0.125 Sum_probs=91.7
Q ss_pred CCCCCCCceEEeeeEEecHHH-HHHHHhcCccceEEeeeecCCcceEEEe---ccCCCcceEEEEecCCceEEEEE-CCc
Q 019478 168 LSNIKSLRSLCLDAVNVSGEV-LEFFIYSCPLLARLRVVFSLDLLSLKVV---GSSVKLKYLDICYCYFMEEVEIS-APS 242 (340)
Q Consensus 168 ~~~~~~L~~L~L~~~~i~~~~-l~~lls~cp~Le~L~L~~c~~~~~l~i~---~~~~~L~~L~l~~c~~l~~l~i~-~p~ 242 (340)
...+++|++|+|.++.+.+-. ....+..+++|++|++.+|. ++. ++ ...++|+.|.++++. ++.+.-. .++
T Consensus 357 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~--lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~ 432 (549)
T 2z81_A 357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHP--MPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQT 432 (549)
T ss_dssp TTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCC--CCSCCCCCTTCCEEECTTSC-CSCCCTTSCTT
T ss_pred hhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-Ccc--CChhhcccccccEEECCCCC-cccccchhcCC
Confidence 345666666666665554321 22345566677777776663 221 11 123567777777665 3332211 257
Q ss_pred eeEEEEeccceeeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcceEEEEEcC
Q 019478 243 VRSFKYYGPEIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLKCFRVVNN 315 (340)
Q Consensus 243 L~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~~L~l~~~ 315 (340)
|+.|+++++......+.+++|+++++....-.. +.. ...+++|+.|++. .+..+..+++|+.|++.++
T Consensus 433 L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~----ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 433 LEVLDVSNNNLDSFSLFLPRLQELYISRNKLKT----LPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp CSEEECCSSCCSCCCCCCTTCCEEECCSSCCSS----CCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred ceEEECCCCChhhhcccCChhcEEECCCCccCc----CCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCC
Confidence 888888877554345678899999887652111 111 2468899999998 2345678899999999996
Q ss_pred -CchhhhHHHHH
Q 019478 316 -FLCFCLILLLF 326 (340)
Q Consensus 316 -~~~~c~~l~~~ 326 (340)
..+.||.+..+
T Consensus 508 ~~~~~~~~~~~l 519 (549)
T 2z81_A 508 PWDCSCPRIDYL 519 (549)
T ss_dssp CBCCCHHHHHHH
T ss_pred CccCCCccHHHH
Confidence 55678865544
No 32
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.04 E-value=3.3e-07 Score=87.87 Aligned_cols=150 Identities=14% Similarity=0.077 Sum_probs=73.7
Q ss_pred CCCCCCceEEeeeEEecHHH-HHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceE------------
Q 019478 169 SNIKSLRSLCLDAVNVSGEV-LEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEE------------ 235 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~i~~~~-l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~------------ 235 (340)
..+++|+.|++.++.+.... ....+.++++|+.|++.+|.-......-..+++|+.|.+.++. +..
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRN 422 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESCTTSCTTTTCTT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCc-cccccchhhhhcCCC
Confidence 56777777777765543211 1122556778888888777421111101223555555555432 111
Q ss_pred ---EEE--------------ECCceeEEEEeccce-----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceE
Q 019478 236 ---VEI--------------SAPSVRSFKYYGPEI-----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETL 293 (340)
Q Consensus 236 ---l~i--------------~~p~L~~l~l~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L 293 (340)
+.+ ..++|+.|.+.++.. +..++.+++|+.+++..+ .+.......+.++++|+.|
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC---QLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS---CCCEECTTTTTTCTTCCEE
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC---ccccCChhhhhcccCCCEE
Confidence 000 124455555544421 122344555555555433 1111112334566777777
Q ss_pred EEE-------cccCCcCCCcceEEEEEcCCch-hhhH
Q 019478 294 ELG-------FVLNAVSILNLKCFRVVNNFLC-FCLI 322 (340)
Q Consensus 294 ~l~-------~~~~~~~f~~L~~L~l~~~~~~-~c~~ 322 (340)
++. .+..+..+++|++|++.++... .||.
T Consensus 500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred eCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 776 2234566777788887775433 3554
No 33
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.04 E-value=5.5e-07 Score=83.73 Aligned_cols=147 Identities=12% Similarity=0.055 Sum_probs=92.4
Q ss_pred CCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE--eccCCCcceEEEEecCCceEEEEE----C
Q 019478 167 TLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV--VGSSVKLKYLDICYCYFMEEVEIS----A 240 (340)
Q Consensus 167 ~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~l~i~----~ 240 (340)
.+.++++|++|+|.+..++.-. ...+..+++|++|++.++. +..+.- -..+++|+.|.+.++..+..+... .
T Consensus 107 ~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l 184 (440)
T 3zyj_A 107 AFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184 (440)
T ss_dssp GGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC
T ss_pred hccCCccCCEEECCCCcCCeeC-HhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc
Confidence 3456778888888776654210 1124567778888887764 222110 013477888888877666655432 4
Q ss_pred CceeEEEEeccceee--ecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcceEEE
Q 019478 241 PSVRSFKYYGPEIKL--RMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLKCFR 311 (340)
Q Consensus 241 p~L~~l~l~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~~L~ 311 (340)
++|+.|+++++.... .+..+++|+.+++... .+.......+.++++|+.|.+. .+..+..+++|++|+
T Consensus 185 ~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N---~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 261 (440)
T 3zyj_A 185 SNLRYLNLAMCNLREIPNLTPLIKLDELDLSGN---HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261 (440)
T ss_dssp SSCCEEECTTSCCSSCCCCTTCSSCCEEECTTS---CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEE
T ss_pred cccCeecCCCCcCccccccCCCcccCEEECCCC---ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEE
Confidence 788888888774321 2556778888877654 1122223456788999999987 345677888999999
Q ss_pred EEcCCch
Q 019478 312 VVNNFLC 318 (340)
Q Consensus 312 l~~~~~~ 318 (340)
+.++.+.
T Consensus 262 L~~N~l~ 268 (440)
T 3zyj_A 262 LAHNNLT 268 (440)
T ss_dssp CTTSCCC
T ss_pred CCCCCCC
Confidence 9885443
No 34
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.02 E-value=1.1e-06 Score=77.72 Aligned_cols=153 Identities=14% Similarity=0.237 Sum_probs=97.9
Q ss_pred CCCeEEEEEecCCCCCCCCCCceeeecCC-ceEeC-----CCCCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEE
Q 019478 129 KKVQKLELNLHPVGGGFWPPLELYAFPPE-CLKLF-----RSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARL 202 (340)
Q Consensus 129 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~-~L~L~-----~~~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L 202 (340)
+++++|++..+.-.. ......++.- .|.|+ .++ .+..+++|+.|++.++.+.+- .. +..+++|++|
T Consensus 63 ~~L~~L~L~~n~i~~----~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L 134 (308)
T 1h6u_A 63 NNLIGLELKDNQITD----LAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDV--TP-LAGLSNLQVL 134 (308)
T ss_dssp TTCCEEECCSSCCCC----CGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCC--GG-GTTCTTCCEE
T ss_pred CCCCEEEccCCcCCC----ChhHccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCc--hh-hcCCCCCCEE
Confidence 578889886553321 1111112211 66666 222 457889999999998876542 22 6789999999
Q ss_pred eeeecCCcceEEEeccCCCcceEEEEecCCceEEE-E-ECCceeEEEEecccee--eecCCCcccceEEEeeccCchhhh
Q 019478 203 RVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVE-I-SAPSVRSFKYYGPEIK--LRMENVPQLLDISIGGGYGVRMKH 278 (340)
Q Consensus 203 ~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~-i-~~p~L~~l~l~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~ 278 (340)
++.++. ++.+..-..+++|+.|.++++. ++++. + ..++|+.|+++++... ..+..+++|+++.+....-....
T Consensus 135 ~l~~n~-l~~~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~- 211 (308)
T 1h6u_A 135 YLDLNQ-ITNISPLAGLTNLQYLSIGNAQ-VSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS- 211 (308)
T ss_dssp ECCSSC-CCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCG-
T ss_pred ECCCCc-cCcCccccCCCCccEEEccCCc-CCCChhhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCccc-
Confidence 999885 2221112344889999999885 44432 1 2488999999887432 12567888999888765211111
Q ss_pred hhhhhhccCCCcceEEEE
Q 019478 279 AISPIMSYFHQLETLELG 296 (340)
Q Consensus 279 ~~~~ll~~~~~L~~L~l~ 296 (340)
. +..+++|+.|++.
T Consensus 212 ---~-l~~l~~L~~L~l~ 225 (308)
T 1h6u_A 212 ---P-LANTSNLFIVTLT 225 (308)
T ss_dssp ---G-GTTCTTCCEEEEE
T ss_pred ---c-ccCCCCCCEEEcc
Confidence 1 5789999999998
No 35
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.02 E-value=5.2e-07 Score=82.29 Aligned_cols=149 Identities=15% Similarity=0.077 Sum_probs=78.9
Q ss_pred CCCCCCceEEeeeEEecHHH---HHHHHhcCccceEEeeeecCCcceE---EEec---cC---------CCcceEEEEec
Q 019478 169 SNIKSLRSLCLDAVNVSGEV---LEFFIYSCPLLARLRVVFSLDLLSL---KVVG---SS---------VKLKYLDICYC 230 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~i~~~~---l~~lls~cp~Le~L~L~~c~~~~~l---~i~~---~~---------~~L~~L~l~~c 230 (340)
..+++|++|+|.++.+++.+ +...+..+++|++|+|.+|.- +.. .+.. .. ++|++|.+++|
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 35677777777777666542 344456677777777777742 110 0110 11 56777777766
Q ss_pred CCce--EEE------EECCceeEEEEecccee------e---ecCCCcccceEEEeeccC-chhhhhhhhhhccCCCcce
Q 019478 231 YFME--EVE------ISAPSVRSFKYYGPEIK------L---RMENVPQLLDISIGGGYG-VRMKHAISPIMSYFHQLET 292 (340)
Q Consensus 231 ~~l~--~l~------i~~p~L~~l~l~~~~~~------~---~~~~~~~L~~l~l~~~~~-~~~~~~~~~ll~~~~~L~~ 292 (340)
. ++ .+. -..++|++|.++++... + .+..+++|+.+.+..+.- ......+...+..+++|+.
T Consensus 170 ~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 170 R-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248 (386)
T ss_dssp C-CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred C-CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence 5 22 111 12467777777665322 1 244566777776654411 0001223344566777777
Q ss_pred EEEE-----------cccCC--cCCCcceEEEEEcCCchh
Q 019478 293 LELG-----------FVLNA--VSILNLKCFRVVNNFLCF 319 (340)
Q Consensus 293 L~l~-----------~~~~~--~~f~~L~~L~l~~~~~~~ 319 (340)
|+|. ++..+ ..+++|++|++.++.+..
T Consensus 249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 7775 12222 226677777776654443
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.00 E-value=2.5e-06 Score=79.99 Aligned_cols=151 Identities=15% Similarity=0.083 Sum_probs=82.5
Q ss_pred CCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEE--EeccCCCcceEEEEecCCceEEEE----
Q 019478 165 PRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLK--VVGSSVKLKYLDICYCYFMEEVEI---- 238 (340)
Q Consensus 165 ~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~--i~~~~~~L~~L~l~~c~~l~~l~i---- 238 (340)
|..+.++++|++|+|.+..+..-. ...+.++++|++|+|.++.- ..+. .-..+++|+.|.+.++. +..+..
T Consensus 73 ~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~ 149 (477)
T 2id5_A 73 PGAFNNLFNLRTLGLRSNRLKLIP-LGVFTGLSNLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDND-LVYISHRAFS 149 (477)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCC-TTSSTTCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEEECCTT-CCEECTTSST
T ss_pred hhhhhCCccCCEEECCCCcCCccC-cccccCCCCCCEEECCCCcc-ccCChhHccccccCCEEECCCCc-cceeChhhcc
Confidence 344566677777777665543210 11234567777777776642 1110 00133677777777664 443321
Q ss_pred ECCceeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcc
Q 019478 239 SAPSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNL 307 (340)
Q Consensus 239 ~~p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L 307 (340)
..++|+.|.+.++... ..+..+++|+.+.+....-. ......+..+++|+.|++. ++.......+|
T Consensus 150 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 226 (477)
T 2id5_A 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN---AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226 (477)
T ss_dssp TCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC---EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred CCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc---EeChhhcccCcccceeeCCCCccccccCcccccCccc
Confidence 1367777777766321 12556777777777654111 1122335577788888887 23333444588
Q ss_pred eEEEEEcCCchhhh
Q 019478 308 KCFRVVNNFLCFCL 321 (340)
Q Consensus 308 ~~L~l~~~~~~~c~ 321 (340)
++|++..+.+...|
T Consensus 227 ~~L~l~~n~l~~~~ 240 (477)
T 2id5_A 227 TSLSITHCNLTAVP 240 (477)
T ss_dssp SEEEEESSCCCSCC
T ss_pred cEEECcCCcccccC
Confidence 88888886554433
No 37
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.00 E-value=2.6e-07 Score=80.62 Aligned_cols=147 Identities=15% Similarity=0.147 Sum_probs=78.7
Q ss_pred CCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE--eccCCCcceEEEEecCCceEEEE----ECC
Q 019478 168 LSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV--VGSSVKLKYLDICYCYFMEEVEI----SAP 241 (340)
Q Consensus 168 ~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~l~i----~~p 241 (340)
+..+++|++|+|.+..+.+-. ...+..+++|++|++.++..++.+.. -..+++|+.|.+.++. +..+.. ..+
T Consensus 52 ~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 129 (285)
T 1ozn_A 52 FRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLA 129 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCT
T ss_pred cccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCc
Confidence 456677777777665443210 11244567777777777653332211 1123667777776665 333211 136
Q ss_pred ceeEEEEecccee-e---ecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcceEE
Q 019478 242 SVRSFKYYGPEIK-L---RMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLKCF 310 (340)
Q Consensus 242 ~L~~l~l~~~~~~-~---~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~~L 310 (340)
+|+.|.+.++... + .++.+++|+.+++.... +.......+.++++|+.|++. .+..+..+++|++|
T Consensus 130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 206 (285)
T 1ozn_A 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR---ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206 (285)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCEEECCCCcccccCHhHhccCCCccEEECCCCc---ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEe
Confidence 7777777665321 1 14556677777665431 111122234566777777776 24555666677777
Q ss_pred EEEcCCchh
Q 019478 311 RVVNNFLCF 319 (340)
Q Consensus 311 ~l~~~~~~~ 319 (340)
++.++.+..
T Consensus 207 ~l~~n~l~~ 215 (285)
T 1ozn_A 207 YLFANNLSA 215 (285)
T ss_dssp ECCSSCCSC
T ss_pred eCCCCcCCc
Confidence 777654443
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.99 E-value=3.4e-06 Score=81.55 Aligned_cols=141 Identities=19% Similarity=0.241 Sum_probs=75.8
Q ss_pred CCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEE-CCcee
Q 019478 166 RTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEIS-APSVR 244 (340)
Q Consensus 166 ~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~-~p~L~ 244 (340)
..+.++++|+.|+|.++.+..-. +..++.|+.|++.++. ++.+..+ .+|+.|.++++. +..+... .++|+
T Consensus 165 ~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~L~l~~n~-l~~l~~~---~~L~~L~ls~n~-l~~~~~~~~~~L~ 235 (597)
T 3oja_B 165 DTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNL-LSTLAIP---IAVEELDASHNS-INVVRGPVNVELT 235 (597)
T ss_dssp TTTTTCTTCCEEECTTSCCSBCC----GGGCTTCSEEECCSSC-CSEEECC---TTCSEEECCSSC-CCEEECSCCSCCC
T ss_pred hhhhcCCcCcEEECcCCCCCCcC----hhhhhhhhhhhcccCc-cccccCC---chhheeeccCCc-ccccccccCCCCC
Confidence 34567777777777766654321 3456777777777663 3333222 567777776665 3333221 25666
Q ss_pred EEEEeccce--eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEcCC
Q 019478 245 SFKYYGPEI--KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNNF 316 (340)
Q Consensus 245 ~l~l~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~ 316 (340)
.|.++++.. .-.++.+++|+.+.+.... +.......+.++++|+.|+|. ++.....+++|+.|++.++.
T Consensus 236 ~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 236 ILKLQHNNLTDTAWLLNYPGLVEVDLSYNE---LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 312 (597)
T ss_dssp EEECCSSCCCCCGGGGGCTTCSEEECCSSC---CCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC
T ss_pred EEECCCCCCCCChhhccCCCCCEEECCCCc---cCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC
Confidence 666665532 1224556666666665431 111122334456666666665 33444455666666666644
Q ss_pred ch
Q 019478 317 LC 318 (340)
Q Consensus 317 ~~ 318 (340)
+.
T Consensus 313 l~ 314 (597)
T 3oja_B 313 LL 314 (597)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 39
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.99 E-value=9.5e-07 Score=79.82 Aligned_cols=144 Identities=18% Similarity=0.236 Sum_probs=91.5
Q ss_pred CCCCCCceEEeeeEEec--------HHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceE-----
Q 019478 169 SNIKSLRSLCLDAVNVS--------GEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEE----- 235 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~i~--------~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~----- 235 (340)
..+++|+.|.+..+... ..++..++..+|+|++|.|.++.+.....+ .+++|++|.+..|. +..
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~--~~~~L~~L~L~~~~-l~~~~l~~ 212 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK--PRPNLKSLEIISGG-LPDSVVED 212 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSC--BCTTCSEEEEECSB-CCHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccc--cCCCCcEEEEecCC-CChHHHHH
Confidence 46899999998764321 124778899999999999998854332122 24899999998775 321
Q ss_pred EEE-ECCceeEEEEecc--c------e-----eeecCCCcccceEEEeeccCchhhhhhhhhh--ccCCCcceEEEE---
Q 019478 236 VEI-SAPSVRSFKYYGP--E------I-----KLRMENVPQLLDISIGGGYGVRMKHAISPIM--SYFHQLETLELG--- 296 (340)
Q Consensus 236 l~i-~~p~L~~l~l~~~--~------~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll--~~~~~L~~L~l~--- 296 (340)
+.. ..|+|+.|+++.. . . .+....+|+|+.+.+..+.-. +.....+. ..+++|++|+|+
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~--~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ--NVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTH--HHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCc--hHHHHHHHhCccCCCCCEEECCCCC
Confidence 111 4699999998521 0 0 112235789999988754111 11111121 257889999988
Q ss_pred --------cccCCcCCCcceEEEEEcCCc
Q 019478 297 --------FVLNAVSILNLKCFRVVNNFL 317 (340)
Q Consensus 297 --------~~~~~~~f~~L~~L~l~~~~~ 317 (340)
+...+..+++|+.|++..+.+
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 123335678899998876533
No 40
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.99 E-value=2.2e-06 Score=80.73 Aligned_cols=99 Identities=16% Similarity=0.176 Sum_probs=73.3
Q ss_pred CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEECCceeEEEE
Q 019478 169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKY 248 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l 248 (340)
..+++|++|+|.++.+++-. ...+..+++|+.|+|.+|.-..... -..+++|+.|.++++. ++.+.. .|+|+.|.+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~-~~~L~~L~L 106 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV-GPSIETLHA 106 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCC-GGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE-CTTCCEEEC
T ss_pred ccCCCccEEEeeCCcCCCCC-HHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC-CCCcCEEEC
Confidence 46779999999998765421 1235789999999999986322222 3455899999999986 777654 499999999
Q ss_pred eccce-eeecCCCcccceEEEeec
Q 019478 249 YGPEI-KLRMENVPQLLDISIGGG 271 (340)
Q Consensus 249 ~~~~~-~~~~~~~~~L~~l~l~~~ 271 (340)
+++.. .+....+++|+.+++..+
T Consensus 107 ~~N~l~~~~~~~l~~L~~L~L~~N 130 (487)
T 3oja_A 107 ANNNISRVSCSRGQGKKNIYLANN 130 (487)
T ss_dssp CSSCCCCEEECCCSSCEEEECCSS
T ss_pred cCCcCCCCCccccCCCCEEECCCC
Confidence 98854 344556789999988765
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.98 E-value=2.2e-06 Score=76.30 Aligned_cols=140 Identities=12% Similarity=0.110 Sum_probs=79.4
Q ss_pred CCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcc-eEE--EeccCCCcceEEEEecCCceEEEEE-CCceeEE
Q 019478 171 IKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLL-SLK--VVGSSVKLKYLDICYCYFMEEVEIS-APSVRSF 246 (340)
Q Consensus 171 ~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~-~l~--i~~~~~~L~~L~l~~c~~l~~l~i~-~p~L~~l 246 (340)
+++|++|++.++.+..- ....+..++.|+.|++.++.-.. ... .-..+++|+.|.++++. ++.+... .++|+.|
T Consensus 120 ~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L 197 (330)
T 1xku_A 120 PKTLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTEL 197 (330)
T ss_dssp CTTCCEEECCSSCCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEE
T ss_pred cccccEEECCCCccccc-CHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEE
Confidence 36788888777655421 12335678888888888775311 000 01134677788777765 3332111 2677777
Q ss_pred EEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEcC
Q 019478 247 KYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNN 315 (340)
Q Consensus 247 ~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~ 315 (340)
+++++... ..+..+++|+.+.+....- .......+.++++|+.|++. +|..+..+++|++|++.++
T Consensus 198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSI---SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp ECTTSCCCEECTGGGTTCTTCCEEECCSSCC---CEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcC---ceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCC
Confidence 77766331 2355677777777765411 11112234566777777776 4455556667777777663
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.97 E-value=5.4e-07 Score=79.83 Aligned_cols=161 Identities=15% Similarity=0.032 Sum_probs=97.9
Q ss_pred CCCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEec---cCC-CcceEEEEecCCceEEE--
Q 019478 164 SPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVG---SSV-KLKYLDICYCYFMEEVE-- 237 (340)
Q Consensus 164 ~~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~---~~~-~L~~L~l~~c~~l~~l~-- 237 (340)
.|..+.++++|++|+|.+..+... +...+..+++|++|++.++.- +. .++. ..+ +|+.|.++++. +....
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l-~~-~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~ 192 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRI-SG-AIPDSYGSFSKLFTSMTISRNR-LTGKIPP 192 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCC-EE-ECCGGGGCCCTTCCEEECCSSE-EEEECCG
T ss_pred CCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeEECcCCcc-cC-cCCHHHhhhhhcCcEEECcCCe-eeccCCh
Confidence 444566788888888887766421 112245678888888888752 21 1111 123 78888887765 33211
Q ss_pred -EECCceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCC
Q 019478 238 -ISAPSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSIL 305 (340)
Q Consensus 238 -i~~p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~ 305 (340)
+...+|+.|+++++.. +..++.+++|+.+.+....-. ... ..+..+++|+.|++. +|..+..++
T Consensus 193 ~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~---~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 268 (313)
T 1ogq_A 193 TFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA---FDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268 (313)
T ss_dssp GGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC---CBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCT
T ss_pred HHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee---eec-CcccccCCCCEEECcCCcccCcCChHHhcCc
Confidence 1112388888877643 223567888888888655111 111 114578899999987 456677888
Q ss_pred cceEEEEEcCCc-------hhhhHHHHHHHHhcc
Q 019478 306 NLKCFRVVNNFL-------CFCLILLLFLRKICN 332 (340)
Q Consensus 306 ~L~~L~l~~~~~-------~~c~~l~~~~l~~cp 332 (340)
+|++|++.++.+ ...+.|+.+.+...|
T Consensus 269 ~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 269 FLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp TCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred CCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 999999887433 234555555555555
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.96 E-value=2.9e-06 Score=79.24 Aligned_cols=139 Identities=17% Similarity=0.188 Sum_probs=84.9
Q ss_pred CCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEE-CCceeEE
Q 019478 168 LSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEIS-APSVRSF 246 (340)
Q Consensus 168 ~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~-~p~L~~l 246 (340)
+.++++|++|++.+..+.. +. +..+++|++|++.++. ++.+.+ ..+++|+.|.+.++..++.+.+. .++|+.|
T Consensus 102 ~~~l~~L~~L~L~~N~l~~--l~--~~~l~~L~~L~l~~N~-l~~l~l-~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L 175 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTK--LD--VSQNPLLTYLNCARNT-LTEIDV-SHNTQLTELDCHLNKKITKLDVTPQTQLTTL 175 (457)
T ss_dssp CTTCTTCCEEECCSSCCSC--CC--CTTCTTCCEEECTTSC-CSCCCC-TTCTTCCEEECTTCSCCCCCCCTTCTTCCEE
T ss_pred cCCCCcCCEEECCCCcCCe--ec--CCCCCcCCEEECCCCc-cceecc-ccCCcCCEEECCCCCcccccccccCCcCCEE
Confidence 4566777777776665543 11 4566777777777664 222222 23467777777777545554332 4777888
Q ss_pred EEeccce-eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEcCCchh
Q 019478 247 KYYGPEI-KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNNFLCF 319 (340)
Q Consensus 247 ~l~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~~~~ 319 (340)
+++++.. .+.++.+++|+.+.+....-..+ -+..+++|+.|++. +| +..+++|+.|++.++.+..
T Consensus 176 ~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~------~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 176 DCSFNKITELDVSQNKLLNRLNCDTNNITKL------DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp ECCSSCCCCCCCTTCTTCCEEECCSSCCSCC------CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC
T ss_pred ECCCCccceeccccCCCCCEEECcCCcCCee------ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCC
Confidence 7776643 33466777788777765411111 14577888888887 33 5577788888888865554
Q ss_pred h
Q 019478 320 C 320 (340)
Q Consensus 320 c 320 (340)
.
T Consensus 248 ~ 248 (457)
T 3bz5_A 248 L 248 (457)
T ss_dssp C
T ss_pred c
Confidence 3
No 44
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.95 E-value=9.8e-08 Score=82.85 Aligned_cols=141 Identities=13% Similarity=0.179 Sum_probs=99.7
Q ss_pred CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEE----ECCcee
Q 019478 169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEI----SAPSVR 244 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i----~~p~L~ 244 (340)
..+++|+.|.+.+..+.+- .. +..+++|+.|++.++. +..+..-..+++|+.|.+.++. ++.+.- ..++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~--~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSV--QG-IQYLPNVRYLALGGNK-LHDISALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHTTCCEEECTTSCCCCC--TT-GGGCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCC
T ss_pred ccccceeeeeeCCCCcccc--cc-cccCCCCcEEECCCCC-CCCchhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCC
Confidence 5678999999988776531 11 5679999999999985 3332212245899999999886 555432 248999
Q ss_pred EEEEecccee-e---ecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------c-ccCCcCCCcceEEEEE
Q 019478 245 SFKYYGPEIK-L---RMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------F-VLNAVSILNLKCFRVV 313 (340)
Q Consensus 245 ~l~l~~~~~~-~---~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~-~~~~~~f~~L~~L~l~ 313 (340)
+|++.++... + .++.+++|+.+.+..+. +.......+..+++|+.|++. + +..+..+++|++|++.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ---LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCc---cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence 9999988542 1 25678999999987651 112223446789999999998 2 3345678999999999
Q ss_pred cCCc
Q 019478 314 NNFL 317 (340)
Q Consensus 314 ~~~~ 317 (340)
++.+
T Consensus 190 ~N~l 193 (272)
T 3rfs_A 190 QNQL 193 (272)
T ss_dssp SSCC
T ss_pred CCcC
Confidence 8443
No 45
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.94 E-value=2.1e-06 Score=73.67 Aligned_cols=33 Identities=21% Similarity=0.431 Sum_probs=31.6
Q ss_pred CCCCChHHHHHHHhcCChHHHHHHHHhhhhhhh
Q 019478 21 ISRLPDEILVNIISRLAVREAARTSVLSSRWKY 53 (340)
Q Consensus 21 ~s~LPd~il~~Ils~L~~~d~~r~~~vsk~W~~ 53 (340)
++.||+||+.+||+||+.+|+++++.|||+||.
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~ 37 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE 37 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999996
No 46
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.94 E-value=4.3e-07 Score=84.59 Aligned_cols=101 Identities=12% Similarity=0.091 Sum_probs=64.3
Q ss_pred CCcceEEEEecCCceEEEE----ECCceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcc
Q 019478 220 VKLKYLDICYCYFMEEVEI----SAPSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLE 291 (340)
Q Consensus 220 ~~L~~L~l~~c~~l~~l~i----~~p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~ 291 (340)
++|+.|.++++. ++.+.. ..++|+.|+++++.. ...++.+++|+.+++.... +.......+.++++|+
T Consensus 299 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 299 TDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH---IRALGDQSFLGLPNLK 374 (455)
T ss_dssp TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSC---CCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCc---ccccChhhcccccccc
Confidence 567777776665 444322 237788888877643 2235667888888876541 1112234456788999
Q ss_pred eEEEE------cc-cCCcCCCcceEEEEEcCCc-hhhhHHH
Q 019478 292 TLELG------FV-LNAVSILNLKCFRVVNNFL-CFCLILL 324 (340)
Q Consensus 292 ~L~l~------~~-~~~~~f~~L~~L~l~~~~~-~~c~~l~ 324 (340)
.|++. ++ ..+..+++|++|++.++.+ +.||.+.
T Consensus 375 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 415 (455)
T 3v47_A 375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 415 (455)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred EEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence 99987 23 3456788999999998644 4577544
No 47
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.94 E-value=2.5e-07 Score=89.56 Aligned_cols=36 Identities=19% Similarity=0.125 Sum_probs=22.9
Q ss_pred hhccCCCcceEEEE-------cccCCcCCCcceEEEEEcCCch
Q 019478 283 IMSYFHQLETLELG-------FVLNAVSILNLKCFRVVNNFLC 318 (340)
Q Consensus 283 ll~~~~~L~~L~l~-------~~~~~~~f~~L~~L~l~~~~~~ 318 (340)
.+..+++|+.|++. .+..+..+++|++|++.++.+.
T Consensus 471 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 513 (606)
T 3t6q_A 471 SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513 (606)
T ss_dssp GGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred hhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccC
Confidence 35566777777776 2455666777777777775443
No 48
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.89 E-value=1.8e-05 Score=69.82 Aligned_cols=194 Identities=14% Similarity=0.106 Sum_probs=117.9
Q ss_pred ceeEEEEEEEeCCCCchhHHHHHHHHHhCCCeEEEEEecCCCCCCCCCCceeeecCCceEeCCCCCCC--CCCCCCceEE
Q 019478 101 CINEFRLCFELRNSHGSFITHWIFTALAKKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTL--SNIKSLRSLC 178 (340)
Q Consensus 101 ~l~~l~l~~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~L~~~~~~~--~~~~~L~~L~ 178 (340)
.++.+.+.- .......+..........++++|.+..+...+ ..|..+ ..+++|++|+
T Consensus 65 ~l~~l~l~~--~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-------------------~~~~~~~~~~~~~L~~L~ 123 (310)
T 4glp_A 65 RVRRLTVGA--AQVPAQLLVGALRVLAYSRLKELTLEDLKITG-------------------TMPPLPLEATGLALSSLR 123 (310)
T ss_dssp CCCEEEECS--CCCBHHHHHHHHHHHHHSCCCEEEEESCCCBS-------------------CCCCCSSSCCCBCCSSCE
T ss_pred ceeEEEEeC--CcCCHHHHHHHHHhcccCceeEEEeeCCEecc-------------------chhhhhhhccCCCCCEEE
Confidence 366665521 11222334444555555789999997664332 122333 6789999999
Q ss_pred eeeEEecHHH--HH-HHHhcCccceEEeeeecCCcceEE--EeccCCCcceEEEEecCCceE--E--E---EECCceeEE
Q 019478 179 LDAVNVSGEV--LE-FFIYSCPLLARLRVVFSLDLLSLK--VVGSSVKLKYLDICYCYFMEE--V--E---ISAPSVRSF 246 (340)
Q Consensus 179 L~~~~i~~~~--l~-~lls~cp~Le~L~L~~c~~~~~l~--i~~~~~~L~~L~l~~c~~l~~--l--~---i~~p~L~~l 246 (340)
|.++.++... +. .-+..+++|++|++.++.- ..+. .-...++|+.|+++++...+. + . -..|+|++|
T Consensus 124 Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L 202 (310)
T 4glp_A 124 LRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS-PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNL 202 (310)
T ss_dssp EESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS-CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSC
T ss_pred eecccccchhhhhHHHHhhhccCCCEEEeeCCCc-chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEE
Confidence 9999876421 22 1134799999999999863 2211 111348899999999873221 1 0 135889999
Q ss_pred EEeccceee-------ecCCCcccceEEEeeccCchhhhhhhhhhcc---CCCcceEEEE------cccCCcCCCcceEE
Q 019478 247 KYYGPEIKL-------RMENVPQLLDISIGGGYGVRMKHAISPIMSY---FHQLETLELG------FVLNAVSILNLKCF 310 (340)
Q Consensus 247 ~l~~~~~~~-------~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~---~~~L~~L~l~------~~~~~~~f~~L~~L 310 (340)
.++++.... .++.+++|+++.+....- ......-+.. +++|+.|++. +|..+ +++|++|
T Consensus 203 ~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l---~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~L~~L 277 (310)
T 4glp_A 203 ALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSL---RATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL--PAKLRVL 277 (310)
T ss_dssp BCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCC---CCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC--CSCCSCE
T ss_pred ECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCC---CccchhhHHhccCcCcCCEEECCCCCCCchhhhh--cCCCCEE
Confidence 988875421 135678899998876511 1111111223 3799999998 33333 3799999
Q ss_pred EEEcCCchhhh
Q 019478 311 RVVNNFLCFCL 321 (340)
Q Consensus 311 ~l~~~~~~~c~ 321 (340)
++.++.+...|
T Consensus 278 ~Ls~N~l~~~~ 288 (310)
T 4glp_A 278 DLSSNRLNRAP 288 (310)
T ss_dssp ECCSCCCCSCC
T ss_pred ECCCCcCCCCc
Confidence 99987666544
No 49
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.88 E-value=1.7e-06 Score=76.59 Aligned_cols=170 Identities=19% Similarity=0.129 Sum_probs=97.2
Q ss_pred hCCCeEEEEEecCCCCCCCCCCceeeecCCceEeCCCCCCC--CCCCCCceEEeeeEEecHH--HHHHHHhc-CccceEE
Q 019478 128 AKKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTL--SNIKSLRSLCLDAVNVSGE--VLEFFIYS-CPLLARL 202 (340)
Q Consensus 128 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~L~~~~~~~--~~~~~L~~L~L~~~~i~~~--~l~~lls~-cp~Le~L 202 (340)
-.++++|++..+...+ ..|..+ ..+++|++|+|.+..+... .+..+... .++|++|
T Consensus 94 l~~L~~L~L~~n~l~~-------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L 154 (312)
T 1wwl_A 94 ISGLQELTLENLEVTG-------------------TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVL 154 (312)
T ss_dssp TSCCCEEEEEEEBCBS-------------------CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEE
T ss_pred cCCccEEEccCCcccc-------------------hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEE
Confidence 4689999998764332 122222 6788899999988876542 23332211 3888999
Q ss_pred eeeecCCcceEE--EeccCCCcceEEEEecCCceEEE-------EECCceeEEEEecccee-------eecCCCcccceE
Q 019478 203 RVVFSLDLLSLK--VVGSSVKLKYLDICYCYFMEEVE-------ISAPSVRSFKYYGPEIK-------LRMENVPQLLDI 266 (340)
Q Consensus 203 ~L~~c~~~~~l~--i~~~~~~L~~L~l~~c~~l~~l~-------i~~p~L~~l~l~~~~~~-------~~~~~~~~L~~l 266 (340)
++.++.- ..+. .-..+++|+.|.++++...+.+. -..++|+.|+++++... ..+..+++|+.+
T Consensus 155 ~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L 233 (312)
T 1wwl_A 155 SIAQAHS-LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233 (312)
T ss_dssp EEESCSC-CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEE
T ss_pred EeeCCCC-ccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEE
Confidence 9888752 2111 01134788888888776322111 13478888888776432 112355778877
Q ss_pred EEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEcCCchhhh
Q 019478 267 SIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNNFLCFCL 321 (340)
Q Consensus 267 ~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~~~~c~ 321 (340)
++....-... .....+..+++|+.|++. +|..++ ++|++|++.++.+..-|
T Consensus 234 ~Ls~N~l~~~--~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p 290 (312)
T 1wwl_A 234 DLSHNSLRDA--AGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNP 290 (312)
T ss_dssp ECTTSCCCSS--CCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCC
T ss_pred ECCCCcCCcc--cchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCCh
Confidence 7765411100 001223456778888776 333232 57777777776555443
No 50
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.88 E-value=1.3e-06 Score=76.57 Aligned_cols=135 Identities=15% Similarity=0.165 Sum_probs=64.1
Q ss_pred CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEE--ECCceeEE
Q 019478 169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEI--SAPSVRSF 246 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i--~~p~L~~l 246 (340)
..+++|+.|+|.++.+.+- .. +..+++|+.|++.++. ++.+.--..+++|+.|.++++. ++++.- ..++|+.|
T Consensus 65 ~~l~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~-i~~~~~l~~l~~L~~L 139 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLESL 139 (291)
T ss_dssp GGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSC-CCCCGGGGGCTTCCEE
T ss_pred hcCCCCCEEEccCCccCCC--cc-cccCCCCCEEECCCCc-CCCChhhccCCCCCEEECCCCc-CCCChhhcCCCCCCEE
Confidence 4456666666665554331 11 4556666666666553 2111111223556666665554 332210 13556666
Q ss_pred EEecccee--eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEc
Q 019478 247 KYYGPEIK--LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVN 314 (340)
Q Consensus 247 ~l~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~ 314 (340)
.++++... -.++.+++|+.+.+..+.-..+. . +..+++|+.|++. ++ .+..+++|+.|++.+
T Consensus 140 ~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~----~-l~~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 140 YLGNNKITDITVLSRLTKLDTLSLEDNQISDIV----P-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS 209 (291)
T ss_dssp ECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEE
T ss_pred EccCCcCCcchhhccCCCCCEEEccCCccccch----h-hcCCCccCEEECCCCcCCCCh-hhccCCCCCEEECcC
Confidence 65554321 12344566666666543111100 1 4456666666665 22 244556666666665
No 51
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.88 E-value=1.1e-05 Score=73.51 Aligned_cols=92 Identities=14% Similarity=0.121 Sum_probs=58.8
Q ss_pred CCcceEEEEecCCceEEEEECCceeEEEEeccce-eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE--
Q 019478 220 VKLKYLDICYCYFMEEVEISAPSVRSFKYYGPEI-KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-- 296 (340)
Q Consensus 220 ~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-- 296 (340)
++|+.|.+.++. +..+. ..++|+.|++.++.. .+.....++|+.+.+....-.. ...+..+++|+.|++.
T Consensus 186 ~~L~~L~l~~n~-l~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~-----~~~l~~l~~L~~L~Ls~n 258 (390)
T 3o6n_A 186 PSLFHANVSYNL-LSTLA-IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-----TAWLLNYPGLVEVDLSYN 258 (390)
T ss_dssp TTCSEEECCSSC-CSEEE-CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC-----CGGGGGCTTCSEEECCSS
T ss_pred cccceeeccccc-ccccC-CCCcceEEECCCCeeeeccccccccccEEECCCCCCcc-----cHHHcCCCCccEEECCCC
Confidence 445555554443 33332 235777777776643 2334446788888887652111 1456789999999998
Q ss_pred -----cccCCcCCCcceEEEEEcCCch
Q 019478 297 -----FVLNAVSILNLKCFRVVNNFLC 318 (340)
Q Consensus 297 -----~~~~~~~f~~L~~L~l~~~~~~ 318 (340)
.+..+..+++|++|++.++.+.
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (390)
T 3o6n_A 259 ELEKIMYHPFVKMQRLERLYISNNRLV 285 (390)
T ss_dssp CCCEEESGGGTTCSSCCEEECCSSCCC
T ss_pred cCCCcChhHccccccCCEEECCCCcCc
Confidence 3566778999999999985443
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.86 E-value=3.4e-06 Score=80.80 Aligned_cols=139 Identities=17% Similarity=0.183 Sum_probs=87.7
Q ss_pred CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEE-Ee---ccCCCcceEEEEecCCceEEE--E-ECC
Q 019478 169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLK-VV---GSSVKLKYLDICYCYFMEEVE--I-SAP 241 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~-i~---~~~~~L~~L~l~~c~~l~~l~--i-~~p 241 (340)
..+++|+.|++.++.+.... . ...+|+|++|++.++. ++... ++ ..+++|+.|.++++. +..+. + ..+
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~-~--~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~ 396 (570)
T 2z63_A 322 LKLKSLKRLTFTSNKGGNAF-S--EVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLE 396 (570)
T ss_dssp CBCSSCCEEEEESCBSCCBC-C--CCBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCT
T ss_pred ccccccCEEeCcCCcccccc-c--cccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCc-cccccccccccC
Confidence 35677777777665533211 0 0457778888887775 22221 11 244788888888876 44433 2 358
Q ss_pred ceeEEEEecccee-----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE--------cccCCcCCCcce
Q 019478 242 SVRSFKYYGPEIK-----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG--------FVLNAVSILNLK 308 (340)
Q Consensus 242 ~L~~l~l~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~--------~~~~~~~f~~L~ 308 (340)
+|+.|.+.++... ..+..+++|+.+.+..+. +.......+.++++|+.|++. +|..+..+++|+
T Consensus 397 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~ 473 (570)
T 2z63_A 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH---TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473 (570)
T ss_dssp TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC---CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc---ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC
Confidence 8888888876432 235677888888876541 112233456788999999986 445677888999
Q ss_pred EEEEEcC
Q 019478 309 CFRVVNN 315 (340)
Q Consensus 309 ~L~l~~~ 315 (340)
+|++.++
T Consensus 474 ~L~l~~n 480 (570)
T 2z63_A 474 FLDLSQC 480 (570)
T ss_dssp EEECTTS
T ss_pred EEECCCC
Confidence 9998874
No 53
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.86 E-value=5.4e-06 Score=75.50 Aligned_cols=150 Identities=17% Similarity=0.179 Sum_probs=79.6
Q ss_pred CCCCCCCceEEeeeEEec------HHH---HHHHHhcCccceEEeeeecCCcc----eE-EEeccCCCcceEEEEecCCc
Q 019478 168 LSNIKSLRSLCLDAVNVS------GEV---LEFFIYSCPLLARLRVVFSLDLL----SL-KVVGSSVKLKYLDICYCYFM 233 (340)
Q Consensus 168 ~~~~~~L~~L~L~~~~i~------~~~---l~~lls~cp~Le~L~L~~c~~~~----~l-~i~~~~~~L~~L~l~~c~~l 233 (340)
+..+++|++|+|.++.+. ..+ +...+..+++|++|+|.++.-.. .+ ..-..+++|++|.+++|. +
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l 134 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-L 134 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-C
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-C
Confidence 345666666666654321 112 22334456666666666664211 00 000233677777777765 2
Q ss_pred eEEE---EE-----C---------CceeEEEEecccee--------eecCCCcccceEEEeeccCc--hhhhhhhhhhcc
Q 019478 234 EEVE---IS-----A---------PSVRSFKYYGPEIK--------LRMENVPQLLDISIGGGYGV--RMKHAISPIMSY 286 (340)
Q Consensus 234 ~~l~---i~-----~---------p~L~~l~l~~~~~~--------~~~~~~~~L~~l~l~~~~~~--~~~~~~~~ll~~ 286 (340)
+... +. . |+|++|.++++... -.+..+++|+.+.+..+.-. .........+..
T Consensus 135 ~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~ 214 (386)
T 2ca6_A 135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG
T ss_pred CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc
Confidence 2110 00 1 67777777766321 12335667777777655111 111122225667
Q ss_pred CCCcceEEEE-----------cccCCcCCCcceEEEEEcCCch
Q 019478 287 FHQLETLELG-----------FVLNAVSILNLKCFRVVNNFLC 318 (340)
Q Consensus 287 ~~~L~~L~l~-----------~~~~~~~f~~L~~L~l~~~~~~ 318 (340)
+++|+.|+|. ++..+..+++|++|++.++.+.
T Consensus 215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence 8888888887 2344567778888888776554
No 54
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.86 E-value=4.4e-06 Score=80.74 Aligned_cols=105 Identities=19% Similarity=0.214 Sum_probs=52.6
Q ss_pred CCCCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE--eccCCCcceEEEEecCCceEEEE--
Q 019478 163 RSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV--VGSSVKLKYLDICYCYFMEEVEI-- 238 (340)
Q Consensus 163 ~~~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~l~i-- 238 (340)
.+|..+.++++|++|++.++.+.+-. ...+..++.|++|++.++.....+.. -..+++|+.|.++++. +..+..
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~ 369 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENLC-QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCN 369 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBGG-GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEEST
T ss_pred CCChhhcccccCCEEECccCCcCcCc-hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcc
Confidence 45555667777777777776654321 12245567777777776642211110 1123566666666554 333321
Q ss_pred ----ECCceeEEEEecccee----eecCCCcccceEEEe
Q 019478 239 ----SAPSVRSFKYYGPEIK----LRMENVPQLLDISIG 269 (340)
Q Consensus 239 ----~~p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~ 269 (340)
..++|+.|++.++... ..++.+++|+.+.+.
T Consensus 370 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408 (606)
T ss_dssp TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECT
T ss_pred hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECC
Confidence 1355666655554221 123345555555554
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.85 E-value=1.4e-05 Score=70.23 Aligned_cols=140 Identities=15% Similarity=0.129 Sum_probs=99.5
Q ss_pred CCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE-e---ccCCCcceEEEEecCCceEEEE---ECCce
Q 019478 171 IKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV-V---GSSVKLKYLDICYCYFMEEVEI---SAPSV 243 (340)
Q Consensus 171 ~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i-~---~~~~~L~~L~l~~c~~l~~l~i---~~p~L 243 (340)
.++|++|+|.+..+.+- -...+..+++|++|++.++. ++.... + ...++|+.|.++++. +..+.- ..++|
T Consensus 27 ~~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L 103 (306)
T 2z66_A 27 PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQL 103 (306)
T ss_dssp CTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTC
T ss_pred CCCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCC
Confidence 47999999998876521 11235679999999999985 333221 1 135899999999986 555432 36999
Q ss_pred eEEEEecccee-----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE--------cccCCcCCCcceEE
Q 019478 244 RSFKYYGPEIK-----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG--------FVLNAVSILNLKCF 310 (340)
Q Consensus 244 ~~l~l~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~--------~~~~~~~f~~L~~L 310 (340)
++|.++++... ..+..+++|+.+.+.... +.......+.++++|+.|++. .+..+..+++|++|
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH---TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC---CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCc---CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence 99999887432 236678899999886541 122233456789999999997 35667788999999
Q ss_pred EEEcCC
Q 019478 311 RVVNNF 316 (340)
Q Consensus 311 ~l~~~~ 316 (340)
++.++.
T Consensus 181 ~Ls~n~ 186 (306)
T 2z66_A 181 DLSQCQ 186 (306)
T ss_dssp ECTTSC
T ss_pred ECCCCC
Confidence 998843
No 56
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.85 E-value=5.1e-06 Score=77.72 Aligned_cols=73 Identities=14% Similarity=0.248 Sum_probs=36.1
Q ss_pred CceeEEEEecccee--eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE---c--ccCCcCCCcceEEEEE
Q 019478 241 PSVRSFKYYGPEIK--LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG---F--VLNAVSILNLKCFRVV 313 (340)
Q Consensus 241 p~L~~l~l~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~---~--~~~~~~f~~L~~L~l~ 313 (340)
++|+.|+++++... -.+..+++|+.+.+....-.... . +..+++|+.|++. + ...+..+++|++|++.
T Consensus 177 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~----~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 177 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT----P-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 251 (466)
T ss_dssp TTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG----G-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred CCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccc----c-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECC
Confidence 55555555554321 11344555666655443111100 1 3456667777666 1 1234566677777777
Q ss_pred cCCch
Q 019478 314 NNFLC 318 (340)
Q Consensus 314 ~~~~~ 318 (340)
++.+.
T Consensus 252 ~n~l~ 256 (466)
T 1o6v_A 252 NNQIS 256 (466)
T ss_dssp SSCCC
T ss_pred CCccc
Confidence 65443
No 57
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.85 E-value=4.9e-06 Score=77.70 Aligned_cols=167 Identities=15% Similarity=0.186 Sum_probs=113.7
Q ss_pred CCCeEEEEEecCCCCCCCCCCceeeecCC-ceEeC-----CCCCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEE
Q 019478 129 KKVQKLELNLHPVGGGFWPPLELYAFPPE-CLKLF-----RSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARL 202 (340)
Q Consensus 129 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~-~L~L~-----~~~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L 202 (340)
..+++|++..+.-.+ .+...++.- +|.++ .++ +..+++|++|++.+..+..- . +..++.|++|
T Consensus 85 ~~L~~L~Ls~N~l~~-----~~~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l--~--l~~l~~L~~L 153 (457)
T 3bz5_A 85 TNLTYLACDSNKLTN-----LDVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEI--D--VSHNTQLTEL 153 (457)
T ss_dssp TTCSEEECCSSCCSC-----CCCTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCC--C--CTTCTTCCEE
T ss_pred CCCCEEECcCCCCce-----eecCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCcccee--c--cccCCcCCEE
Confidence 478888886553321 111112211 66666 333 57899999999998877542 2 6779999999
Q ss_pred eeeecCCcceEEEeccCCCcceEEEEecCCceEEEEE-CCceeEEEEeccce-eeecCCCcccceEEEeeccCchhhhhh
Q 019478 203 RVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEIS-APSVRSFKYYGPEI-KLRMENVPQLLDISIGGGYGVRMKHAI 280 (340)
Q Consensus 203 ~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~-~p~L~~l~l~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~ 280 (340)
++.+|..++.+.+ ..+++|+.|.++++. ++.+.+. .++|+.|.++++.. .+.++.+++|+.+.+....-.. +
T Consensus 154 ~l~~n~~~~~~~~-~~l~~L~~L~ls~n~-l~~l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~----i 227 (457)
T 3bz5_A 154 DCHLNKKITKLDV-TPQTQLTTLDCSFNK-ITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE----I 227 (457)
T ss_dssp ECTTCSCCCCCCC-TTCTTCCEEECCSSC-CCCCCCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC----C
T ss_pred ECCCCCccccccc-ccCCcCCEEECCCCc-cceeccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc----c
Confidence 9999976655433 244899999999886 6665543 58999999988754 3457889999999987652111 1
Q ss_pred hhhhccCCCcceEEEE---c-ccCCcCCCcceEEEEEc
Q 019478 281 SPIMSYFHQLETLELG---F-VLNAVSILNLKCFRVVN 314 (340)
Q Consensus 281 ~~ll~~~~~L~~L~l~---~-~~~~~~f~~L~~L~l~~ 314 (340)
. +..+++|+.|++. + ...+..+++|+.|.+..
T Consensus 228 p--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 228 D--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ 263 (457)
T ss_dssp C--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTT
T ss_pred C--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccC
Confidence 1 5688999999998 1 12245777888776544
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.84 E-value=1.3e-06 Score=77.32 Aligned_cols=149 Identities=16% Similarity=0.078 Sum_probs=100.9
Q ss_pred CCCCCceEEeeeEEecHHHHHHH-HhcCccceEEeeeecCCcceE-EEecc-----CCCcceEEEEecCCceEEE----E
Q 019478 170 NIKSLRSLCLDAVNVSGEVLEFF-IYSCPLLARLRVVFSLDLLSL-KVVGS-----SVKLKYLDICYCYFMEEVE----I 238 (340)
Q Consensus 170 ~~~~L~~L~L~~~~i~~~~l~~l-ls~cp~Le~L~L~~c~~~~~l-~i~~~-----~~~L~~L~l~~c~~l~~l~----i 238 (340)
++++|++|+|.++.+.+..-..+ +..+++|++|++.++. ++.. ..-.. .++|++|.++++. +..+. -
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhc
Confidence 58899999999998764322221 3678999999999985 2221 00011 2789999999987 44432 1
Q ss_pred ECCceeEEEEeccce--------eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE---cc-----cCCc
Q 019478 239 SAPSVRSFKYYGPEI--------KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG---FV-----LNAV 302 (340)
Q Consensus 239 ~~p~L~~l~l~~~~~--------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~---~~-----~~~~ 302 (340)
..++|+.|+++++.. .+.++.+++|+++++....-..+......++.++++|+.|++. +. ..+.
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 358999999998852 1223788999999997662222223444666788999999998 21 2334
Q ss_pred CCCcceEEEEEcCCchhh
Q 019478 303 SILNLKCFRVVNNFLCFC 320 (340)
Q Consensus 303 ~f~~L~~L~l~~~~~~~c 320 (340)
.+++|++|++.++.+...
T Consensus 251 ~l~~L~~L~Ls~N~l~~i 268 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLKQV 268 (312)
T ss_dssp CCTTCCEEECTTSCCSSC
T ss_pred hcCCCCEEECCCCccChh
Confidence 568999999988655533
No 59
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.84 E-value=2.8e-06 Score=74.34 Aligned_cols=147 Identities=19% Similarity=0.211 Sum_probs=91.7
Q ss_pred CCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceE-EEeccCCCcceEEEEecCCceEEEE----EC
Q 019478 166 RTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSL-KVVGSSVKLKYLDICYCYFMEEVEI----SA 240 (340)
Q Consensus 166 ~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~l~i----~~ 240 (340)
..+.++++|++|+|.+..++.-.. ...+++|++|++.++. +..+ ......++|+.|.++++. ++.+.- ..
T Consensus 49 ~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l 123 (290)
T 1p9a_G 49 ATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGL 123 (290)
T ss_dssp GGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTC
T ss_pred HHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCC
Confidence 345677888888887665543111 1467788888888774 2211 111234678888887775 444332 23
Q ss_pred CceeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEE
Q 019478 241 PSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCF 310 (340)
Q Consensus 241 p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L 310 (340)
++|+.|.++++... ..+..+++|+.+.+... .+......++.++++|+.|++. +|..+....+|++|
T Consensus 124 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N---~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l 200 (290)
T 1p9a_G 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN---NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFA 200 (290)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS---CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEE
T ss_pred CCCCEEECCCCCCCccChhhcccccCCCEEECCCC---cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeE
Confidence 78888888877432 12456678888877544 1122233455678899999987 56666677789999
Q ss_pred EEEcCCch-hh
Q 019478 311 RVVNNFLC-FC 320 (340)
Q Consensus 311 ~l~~~~~~-~c 320 (340)
.+.++... .|
T Consensus 201 ~L~~Np~~C~c 211 (290)
T 1p9a_G 201 FLHGNPWLCNC 211 (290)
T ss_dssp ECCSCCBCCSG
T ss_pred EeCCCCccCcC
Confidence 99886443 45
No 60
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.84 E-value=3.6e-06 Score=74.50 Aligned_cols=148 Identities=16% Similarity=0.133 Sum_probs=96.3
Q ss_pred CCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceE-EEeccCCCcceEEEEecCCce-EEEE---E
Q 019478 165 PRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSL-KVVGSSVKLKYLDICYCYFME-EVEI---S 239 (340)
Q Consensus 165 ~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~-~l~i---~ 239 (340)
|..+.++++|++|+|.+..+... +...+..+++|++|++.++.-...+ ..-..+++|++|.++++. +. .+.- .
T Consensus 94 p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~ 171 (313)
T 1ogq_A 94 PPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDSYGS 171 (313)
T ss_dssp CGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGGGGC
T ss_pred ChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHHHhh
Confidence 44557899999999998876421 1222567899999999988421110 001234899999999887 44 2211 1
Q ss_pred C-CceeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcce
Q 019478 240 A-PSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLK 308 (340)
Q Consensus 240 ~-p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~ 308 (340)
. ++|+.|.++++... -.++.+. |+.+.+... .+.......+..+++|+.|++. .+..+..+++|+
T Consensus 172 l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N---~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~ 247 (313)
T 1ogq_A 172 FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN---MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN 247 (313)
T ss_dssp CCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS---EEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCC
T ss_pred hhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC---cccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCC
Confidence 2 48999999877432 1234444 787777654 1122244556789999999998 223356778999
Q ss_pred EEEEEcCCch
Q 019478 309 CFRVVNNFLC 318 (340)
Q Consensus 309 ~L~l~~~~~~ 318 (340)
+|++.++.+.
T Consensus 248 ~L~Ls~N~l~ 257 (313)
T 1ogq_A 248 GLDLRNNRIY 257 (313)
T ss_dssp EEECCSSCCE
T ss_pred EEECcCCccc
Confidence 9999986544
No 61
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.84 E-value=3.7e-05 Score=73.25 Aligned_cols=147 Identities=12% Similarity=0.098 Sum_probs=97.5
Q ss_pred CCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE---eccCCCcceEEEEecCCceEEEE---
Q 019478 165 PRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV---VGSSVKLKYLDICYCYFMEEVEI--- 238 (340)
Q Consensus 165 ~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i---~~~~~~L~~L~l~~c~~l~~l~i--- 238 (340)
|..+.++++|++|+|.++.+.+-. ...+..+++|++|++.++. +..+.+ -..+++|+.|.+.++..++.+..
T Consensus 67 ~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 144 (549)
T 2z81_A 67 GDAFYSLGSLEHLDLSDNHLSSLS-SSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144 (549)
T ss_dssp TTTTTTCTTCCEEECTTSCCCSCC-HHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred hhhccccccCCEEECCCCccCccC-HHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhh
Confidence 355788999999999988765422 2236789999999999985 222111 23457999999999875665532
Q ss_pred -ECCceeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE---cc-------cCCcC
Q 019478 239 -SAPSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG---FV-------LNAVS 303 (340)
Q Consensus 239 -~~p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~---~~-------~~~~~ 303 (340)
..++|+.|+++++... -.++.+++|+++.+....... ....++..+++|+.|++. +. .....
T Consensus 145 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 221 (549)
T 2z81_A 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF---LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV 221 (549)
T ss_dssp TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT---HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCC
T ss_pred hcccccCeeeccCCcccccChhhhhccccCceEecccCcccc---cchhhHhhcccccEEEccCCccccccccccchhhh
Confidence 2488999999877432 235667888888887653222 122334568889999887 11 11234
Q ss_pred CCcceEEEEEcCC
Q 019478 304 ILNLKCFRVVNNF 316 (340)
Q Consensus 304 f~~L~~L~l~~~~ 316 (340)
+++|++|++.++.
T Consensus 222 ~~~L~~L~l~~n~ 234 (549)
T 2z81_A 222 SSPMKKLAFRGSV 234 (549)
T ss_dssp CCCCCEEEEESCE
T ss_pred hhcccceeccccc
Confidence 5677777777643
No 62
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.83 E-value=4e-06 Score=71.00 Aligned_cols=101 Identities=9% Similarity=0.076 Sum_probs=51.2
Q ss_pred CCCCCCCCceEEeeeEE-ecHHHHHHHHhcCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceEEEE--ECC
Q 019478 167 TLSNIKSLRSLCLDAVN-VSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEEVEI--SAP 241 (340)
Q Consensus 167 ~~~~~~~L~~L~L~~~~-i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~l~i--~~p 241 (340)
.+.++++|++|++.+.. ++.-. ...+..+++|++|++.+|..++.+... ..+++|+.|.+.++. ++.+.- ..+
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~~~~l~ 127 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVY 127 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCCCTTCC
T ss_pred HccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Ccccccccccc
Confidence 34567777777777653 32100 001355777777777775555432211 133667777777664 332211 124
Q ss_pred cee---EEEEecc-ce-ee---ecCCCcccc-eEEEe
Q 019478 242 SVR---SFKYYGP-EI-KL---RMENVPQLL-DISIG 269 (340)
Q Consensus 242 ~L~---~l~l~~~-~~-~~---~~~~~~~L~-~l~l~ 269 (340)
+|+ .|+++++ .. .+ .+..+++|+ .+.+.
T Consensus 128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred ccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence 444 6666665 22 11 134455566 55554
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.82 E-value=1.6e-06 Score=77.98 Aligned_cols=173 Identities=13% Similarity=0.061 Sum_probs=110.4
Q ss_pred ceEeC-----C-CCCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE---eccCCCcceEEEE
Q 019478 158 CLKLF-----R-SPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV---VGSSVKLKYLDIC 228 (340)
Q Consensus 158 ~L~L~-----~-~~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i---~~~~~~L~~L~l~ 228 (340)
.|.|. . .+..+.++++|++|+|.+..++.- ....+..+++|++|++.++. ++.+.. -..+++|+.|.+.
T Consensus 80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~ 157 (353)
T 2z80_A 80 ALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVG 157 (353)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEE
T ss_pred EEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECC
Confidence 56665 2 234577889999999998876531 12336789999999999884 222211 2245899999999
Q ss_pred ecCCceEEEE----ECCceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE---c
Q 019478 229 YCYFMEEVEI----SAPSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG---F 297 (340)
Q Consensus 229 ~c~~l~~l~i----~~p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~---~ 297 (340)
++..++.+.. ..++|+.|+++++.. +..++.+++|+++.+....- ......++..+++|+.|++. +
T Consensus 158 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l---~~~~~~~~~~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 158 NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH---ILLLEIFVDVTSSVECLELRDTDL 234 (353)
T ss_dssp ESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS---TTHHHHHHHHTTTEEEEEEESCBC
T ss_pred CCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc---ccchhhhhhhcccccEEECCCCcc
Confidence 9865666532 248999999998743 22366788899998876522 22223445678999999998 1
Q ss_pred cc-------CCcCCCcceEEEEEcCCchhhhHHH-HHHHHhccccc
Q 019478 298 VL-------NAVSILNLKCFRVVNNFLCFCLILL-LFLRKICNSHN 335 (340)
Q Consensus 298 ~~-------~~~~f~~L~~L~l~~~~~~~c~~l~-~~~l~~cp~~~ 335 (340)
.. .......++.+.+....+.....-. .-.+..+|+++
T Consensus 235 ~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~ 280 (353)
T 2z80_A 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLL 280 (353)
T ss_dssp TTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCC
T ss_pred ccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCC
Confidence 11 1224567888888886555432211 12355666543
No 64
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.82 E-value=2.5e-06 Score=83.17 Aligned_cols=160 Identities=12% Similarity=0.135 Sum_probs=106.6
Q ss_pred CCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEec-----------cCCCcceEEEEecCCceEEEE
Q 019478 170 NIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVG-----------SSVKLKYLDICYCYFMEEVEI 238 (340)
Q Consensus 170 ~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~-----------~~~~L~~L~l~~c~~l~~l~i 238 (340)
.+++|++|+|.++.+.. --..+...+++|+.|++.++.- +. ++. .+++|+.|.++++. ++.+.-
T Consensus 431 ~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l-~~--i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~ 505 (636)
T 4eco_A 431 KGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNML-TE--IPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSD 505 (636)
T ss_dssp CCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCC-SB--CCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCG
T ss_pred cCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCC-CC--cCHHHhccccccccccCCccEEECcCCc-CCccCh
Confidence 66799999999887762 1223456799999999999852 22 221 01289999999886 554432
Q ss_pred -----ECCceeEEEEeccce---eeecCCCcccceEEEeecc---CchhhhhhhhhhccCCCcceEEEE------cccCC
Q 019478 239 -----SAPSVRSFKYYGPEI---KLRMENVPQLLDISIGGGY---GVRMKHAISPIMSYFHQLETLELG------FVLNA 301 (340)
Q Consensus 239 -----~~p~L~~l~l~~~~~---~~~~~~~~~L~~l~l~~~~---~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~ 301 (340)
..++|+.|+++++.. +..+..+++|+.+++.... .+.+...+...+.++++|+.|++. +|..+
T Consensus 506 ~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~ 585 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI 585 (636)
T ss_dssp GGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC
T ss_pred hhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhH
Confidence 458999999998743 2345678999999985431 111122334456789999999998 44433
Q ss_pred cCCCcceEEEEEcC------CchhhhHHHHH----------HHHhcccccc
Q 019478 302 VSILNLKCFRVVNN------FLCFCLILLLF----------LRKICNSHNV 336 (340)
Q Consensus 302 ~~f~~L~~L~l~~~------~~~~c~~l~~~----------~l~~cp~~~~ 336 (340)
+++|+.|++.++ ....||.+... .++.||.++.
T Consensus 586 --~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~~ 634 (636)
T 4eco_A 586 --TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDI 634 (636)
T ss_dssp --CTTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGCC
T ss_pred --hCcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCccccc
Confidence 379999999995 33456665432 2446776653
No 65
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.81 E-value=1.7e-06 Score=75.81 Aligned_cols=144 Identities=17% Similarity=0.146 Sum_probs=97.1
Q ss_pred CCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEE---ECCceeEEE
Q 019478 171 IKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEI---SAPSVRSFK 247 (340)
Q Consensus 171 ~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i---~~p~L~~l~ 247 (340)
.++|+.|+|.+..++.-. ...+..+++|+.|++.++. ++.+......++|+.|.++++. ++.+.- ..++|+.|.
T Consensus 30 ~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLD 106 (290)
T ss_dssp CTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEE
T ss_pred CCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEEECCCCc-CCcCchhhccCCCCCEEE
Confidence 378999999877654311 1225678999999999875 4444333556889999998876 444332 248899999
Q ss_pred Eecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------ccc-CCcCCCcceEEEEEcCC
Q 019478 248 YYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVL-NAVSILNLKCFRVVNNF 316 (340)
Q Consensus 248 l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~-~~~~f~~L~~L~l~~~~ 316 (340)
++++... -.+..+++|+.+.+... .+.......+..+++|+.|++. ++. .+..+++|++|.+.++.
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N---~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKGN---ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTS---CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCCC---CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc
Confidence 8877432 23567888888888654 1122233446688899999987 333 34678899999998865
Q ss_pred chhh
Q 019478 317 LCFC 320 (340)
Q Consensus 317 ~~~c 320 (340)
+...
T Consensus 184 l~~i 187 (290)
T 1p9a_G 184 LYTI 187 (290)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 5543
No 66
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.80 E-value=1.4e-05 Score=74.25 Aligned_cols=145 Identities=16% Similarity=0.138 Sum_probs=96.8
Q ss_pred CCCCCceEEeeeEEecHHHHHHHHh--cCccceEEeeeecCCcce----EE--------Ee-ccCCCcceEEEEecCCce
Q 019478 170 NIKSLRSLCLDAVNVSGEVLEFFIY--SCPLLARLRVVFSLDLLS----LK--------VV-GSSVKLKYLDICYCYFME 234 (340)
Q Consensus 170 ~~~~L~~L~L~~~~i~~~~l~~lls--~cp~Le~L~L~~c~~~~~----l~--------i~-~~~~~L~~L~l~~c~~l~ 234 (340)
.+++|++|++.++.+.......+.. ..+.|+.|++.++..... .. +. ...++|+.|.++++. +.
T Consensus 210 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~ 288 (455)
T 3v47_A 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IF 288 (455)
T ss_dssp TTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CC
T ss_pred ccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc-cc
Confidence 4477888888887776644333332 247888888887742211 00 00 012589999999886 44
Q ss_pred EEEE----ECCceeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------ccc
Q 019478 235 EVEI----SAPSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVL 299 (340)
Q Consensus 235 ~l~i----~~p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~ 299 (340)
.+.. ..++|+.|+++++... ..++.+++|+.+++.... +.......+.++++|+.|++. .+.
T Consensus 289 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 365 (455)
T 3v47_A 289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF---LGSIDSRMFENLDKLEVLDLSYNHIRALGDQ 365 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC---CCEECGGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc---cCCcChhHhcCcccCCEEECCCCcccccChh
Confidence 4321 2489999999987542 246678999999997652 122233456789999999998 356
Q ss_pred CCcCCCcceEEEEEcCCch
Q 019478 300 NAVSILNLKCFRVVNNFLC 318 (340)
Q Consensus 300 ~~~~f~~L~~L~l~~~~~~ 318 (340)
.+..+++|++|++.++.+.
T Consensus 366 ~~~~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 366 SFLGLPNLKELALDTNQLK 384 (455)
T ss_dssp TTTTCTTCCEEECCSSCCS
T ss_pred hccccccccEEECCCCccc
Confidence 7788999999999985443
No 67
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.80 E-value=2.9e-06 Score=84.52 Aligned_cols=72 Identities=15% Similarity=0.321 Sum_probs=40.2
Q ss_pred CCceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE---cc--cCCcCCCcceEE
Q 019478 240 APSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG---FV--LNAVSILNLKCF 310 (340)
Q Consensus 240 ~p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~---~~--~~~~~f~~L~~L 310 (340)
.++|++|+++++.. +. ++.+++|+++++.... +...+...+..+++|+.|++. +. .....+++|++|
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~---l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L 274 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK---LSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL 274 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSC---CCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEE
T ss_pred CCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCc---CCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEE
Confidence 36666666665532 12 5566677777665441 111233445677777877776 11 111266788888
Q ss_pred EEEcC
Q 019478 311 RVVNN 315 (340)
Q Consensus 311 ~l~~~ 315 (340)
++.++
T Consensus 275 ~L~~n 279 (768)
T 3rgz_A 275 SLAEN 279 (768)
T ss_dssp ECCSS
T ss_pred ECcCC
Confidence 77763
No 68
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.80 E-value=1.7e-06 Score=83.66 Aligned_cols=136 Identities=15% Similarity=0.183 Sum_probs=65.3
Q ss_pred CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEE--EECCceeEE
Q 019478 169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVE--ISAPSVRSF 246 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~--i~~p~L~~l 246 (340)
..+++|+.|+|.++.+.+-. . +..+++|+.|+|.+|. +..+..-..+++|+.|.++++. +..+. -..|+|+.|
T Consensus 62 ~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L 136 (605)
T 1m9s_A 62 QYLPNVTKLFLNGNKLTDIK--P-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLESL 136 (605)
T ss_dssp GGCTTCCEEECTTSCCCCCG--G-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEECTTSC-CCCCGGGGGCTTCSEE
T ss_pred ccCCCCCEEEeeCCCCCCCh--h-hccCCCCCEEECcCCC-CCCChhhccCCCCCEEEecCCC-CCCCccccCCCccCEE
Confidence 45666666666665543311 1 4556666666666663 2221111233566666666554 33221 013566666
Q ss_pred EEecccee--eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE---c--ccCCcCCCcceEEEEEc
Q 019478 247 KYYGPEIK--LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG---F--VLNAVSILNLKCFRVVN 314 (340)
Q Consensus 247 ~l~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~---~--~~~~~~f~~L~~L~l~~ 314 (340)
.++++... -.+..+++|+.+.|..+.-.. .. . +..+++|+.|+|. + ...+..+++|+.|++.+
T Consensus 137 ~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~---~~-~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 137 YLGNNKITDITVLSRLTKLDTLSLEDNQISD---IV-P-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 206 (605)
T ss_dssp ECCSSCCCCCGGGGSCTTCSEEECCSSCCCC---CG-G-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCS
T ss_pred ECCCCccCCchhhcccCCCCEEECcCCcCCC---ch-h-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccC
Confidence 66555321 124455666666654431111 00 1 4456666666665 1 12244555666666554
No 69
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.79 E-value=8.9e-06 Score=72.34 Aligned_cols=76 Identities=14% Similarity=0.183 Sum_probs=43.2
Q ss_pred CceeEEEEeccce-eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcceEEEE
Q 019478 241 PSVRSFKYYGPEI-KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLKCFRV 312 (340)
Q Consensus 241 p~L~~l~l~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~~L~l 312 (340)
++|+.|.+.++.. .+.....++|+++.+... .+.......+.++++|+.|++. .+..+..+++|++|++
T Consensus 171 ~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 247 (330)
T 1xku_A 171 KKLSYIRIADTNITTIPQGLPPSLTELHLDGN---KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247 (330)
T ss_dssp TTCCEEECCSSCCCSCCSSCCTTCSEEECTTS---CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred CCcCEEECCCCccccCCccccccCCEEECCCC---cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEEC
Confidence 5555555555432 111122355666555433 1111223446688899999987 2335677889999999
Q ss_pred EcCCchh
Q 019478 313 VNNFLCF 319 (340)
Q Consensus 313 ~~~~~~~ 319 (340)
.++.+..
T Consensus 248 ~~N~l~~ 254 (330)
T 1xku_A 248 NNNKLVK 254 (330)
T ss_dssp CSSCCSS
T ss_pred CCCcCcc
Confidence 8865543
No 70
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.77 E-value=1.3e-05 Score=78.10 Aligned_cols=166 Identities=15% Similarity=0.139 Sum_probs=100.6
Q ss_pred CCCeEEEEEecCCCCCCCCCCceeeecCCceEeCCCCCCCCCCCCCceEEeeeEE-ecHH----HHHHH--HhcCccceE
Q 019478 129 KKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLSNIKSLRSLCLDAVN-VSGE----VLEFF--IYSCPLLAR 201 (340)
Q Consensus 129 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~L~~~~~~~~~~~~L~~L~L~~~~-i~~~----~l~~l--ls~cp~Le~ 201 (340)
+++++|.+..+...+ .+|..+.++++|++|+|.++. ++.. .+..+ +..+++|+.
T Consensus 249 ~~L~~L~L~~n~l~~-------------------~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~ 309 (636)
T 4eco_A 249 KDLTDVEVYNCPNLT-------------------KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309 (636)
T ss_dssp TTCCEEEEECCTTCS-------------------SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE
T ss_pred CCCCEEEecCCcCCc-------------------cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE
Confidence 478888887664332 445667889999999999887 7652 23332 134689999
Q ss_pred EeeeecCCcceEEE---eccCCCcceEEEEecCCce-EEE--EECCceeEEEEeccceee---ecCCCcc-cceEEEeec
Q 019478 202 LRVVFSLDLLSLKV---VGSSVKLKYLDICYCYFME-EVE--ISAPSVRSFKYYGPEIKL---RMENVPQ-LLDISIGGG 271 (340)
Q Consensus 202 L~L~~c~~~~~l~i---~~~~~~L~~L~l~~c~~l~-~l~--i~~p~L~~l~l~~~~~~~---~~~~~~~-L~~l~l~~~ 271 (340)
|++.++.- +.+.- -..+++|+.|.+.++. +. .+. -..++|+.|.++++.... .+..+++ |+.+.+...
T Consensus 310 L~L~~n~l-~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 310 IYIGYNNL-KTFPVETSLQKMKKLGMLECLYNQ-LEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp EECCSSCC-SSCCCHHHHTTCTTCCEEECCSCC-CEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSS
T ss_pred EECCCCcC-CccCchhhhccCCCCCEEeCcCCc-CccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCC
Confidence 99998853 32211 1244789999998886 43 443 124788888887774321 2445666 887777654
Q ss_pred cCchhhhhhhhhhcc--CCCcceEEEE-------cccCCc-------CCCcceEEEEEcCCchh
Q 019478 272 YGVRMKHAISPIMSY--FHQLETLELG-------FVLNAV-------SILNLKCFRVVNNFLCF 319 (340)
Q Consensus 272 ~~~~~~~~~~~ll~~--~~~L~~L~l~-------~~~~~~-------~f~~L~~L~l~~~~~~~ 319 (340)
.- . .+...+.. +++|+.|++. .|..++ ...+|++|++.++.+..
T Consensus 388 ~l---~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~ 447 (636)
T 4eco_A 388 KL---K-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447 (636)
T ss_dssp CC---S-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS
T ss_pred cC---c-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc
Confidence 11 1 11122222 3367777776 233333 45577777777755543
No 71
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.77 E-value=1.6e-06 Score=69.30 Aligned_cols=101 Identities=17% Similarity=0.181 Sum_probs=61.0
Q ss_pred CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceE-EE--E-ECCcee
Q 019478 169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEE-VE--I-SAPSVR 244 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~-l~--i-~~p~L~ 244 (340)
...++|+.|++.++.+.+..+...+..+++|+.|++.+|. ++.+..-..+++|+.|.++++. +.. +. . ..|+|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCC
Confidence 3457899999988887654455556778899999999886 4433111234778888888776 332 11 1 146666
Q ss_pred EEEEecccee-----eecCCCcccceEEEeec
Q 019478 245 SFKYYGPEIK-----LRMENVPQLLDISIGGG 271 (340)
Q Consensus 245 ~l~l~~~~~~-----~~~~~~~~L~~l~l~~~ 271 (340)
.|+++++... -.+..+++|+.+++...
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence 6666655321 12344555555555433
No 72
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.76 E-value=1.6e-05 Score=76.80 Aligned_cols=92 Identities=14% Similarity=0.121 Sum_probs=59.3
Q ss_pred CCcceEEEEecCCceEEEEECCceeEEEEeccce-eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE--
Q 019478 220 VKLKYLDICYCYFMEEVEISAPSVRSFKYYGPEI-KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-- 296 (340)
Q Consensus 220 ~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-- 296 (340)
++|+.|.+.++. +..+. ..++|+.|+++++.. .+.....++|+.+.+..+.-.. ...+..+++|+.|+|.
T Consensus 192 ~~L~~L~l~~n~-l~~l~-~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~-----~~~l~~l~~L~~L~Ls~N 264 (597)
T 3oja_B 192 PSLFHANVSYNL-LSTLA-IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-----TAWLLNYPGLVEVDLSYN 264 (597)
T ss_dssp TTCSEEECCSSC-CSEEE-CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC-----CGGGGGCTTCSEEECCSS
T ss_pred hhhhhhhcccCc-ccccc-CCchhheeeccCCcccccccccCCCCCEEECCCCCCCC-----ChhhccCCCCCEEECCCC
Confidence 455555555543 33332 245677777776643 2333345678888876552111 1456789999999998
Q ss_pred -----cccCCcCCCcceEEEEEcCCch
Q 019478 297 -----FVLNAVSILNLKCFRVVNNFLC 318 (340)
Q Consensus 297 -----~~~~~~~f~~L~~L~l~~~~~~ 318 (340)
.+..+..+++|+.|.+.++.+.
T Consensus 265 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 291 (597)
T 3oja_B 265 ELEKIMYHPFVKMQRLERLYISNNRLV 291 (597)
T ss_dssp CCCEEESGGGTTCSSCCEEECTTSCCC
T ss_pred ccCCCCHHHhcCccCCCEEECCCCCCC
Confidence 4567788999999999885544
No 73
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.76 E-value=2.7e-06 Score=82.24 Aligned_cols=154 Identities=11% Similarity=0.085 Sum_probs=95.3
Q ss_pred CCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceE-EEeccCCCcceEEEEecCCceE-EEE----
Q 019478 165 PRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSL-KVVGSSVKLKYLDICYCYFMEE-VEI---- 238 (340)
Q Consensus 165 ~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~-l~i---- 238 (340)
|..+.++++|+.|++.++.+....-...+..+++|+.|++.+|.-.... ..-..+++|+.|.++++. +.+ +..
T Consensus 392 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 470 (606)
T 3vq2_A 392 SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS-FKDNTLSNVFA 470 (606)
T ss_dssp CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCT
T ss_pred hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc-CCCcchHHhhc
Confidence 4455667777777777666543211123456777888888777521110 001134788888888775 332 211
Q ss_pred ECCceeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCC-cc
Q 019478 239 SAPSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSIL-NL 307 (340)
Q Consensus 239 ~~p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~-~L 307 (340)
..++|+.|+++++... ..++.+++|+.+++..+. +.......+.++++|+.|++. +|..+..++ +|
T Consensus 471 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L 547 (606)
T 3vq2_A 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN---LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSL 547 (606)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC---CSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTC
T ss_pred cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc---CCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccC
Confidence 2488888888877432 235678888888886551 112223456688899999987 555566776 69
Q ss_pred eEEEEEcCCch-hhhH
Q 019478 308 KCFRVVNNFLC-FCLI 322 (340)
Q Consensus 308 ~~L~l~~~~~~-~c~~ 322 (340)
++|++.++... .|+.
T Consensus 548 ~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 548 AFFNLTNNSVACICEH 563 (606)
T ss_dssp CEEECCSCCCCCSSTT
T ss_pred cEEEccCCCcccCCcc
Confidence 99999986544 4553
No 74
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.75 E-value=5.2e-06 Score=82.72 Aligned_cols=135 Identities=14% Similarity=0.193 Sum_probs=78.6
Q ss_pred CCCeEEEEEecCCCCCCCCCCceeeecCC-ceEeC------CCCCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceE
Q 019478 129 KKVQKLELNLHPVGGGFWPPLELYAFPPE-CLKLF------RSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLAR 201 (340)
Q Consensus 129 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~-~L~L~------~~~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~ 201 (340)
+++++|++..+...+ ..+...++.- +|.|. .+|. +.++++|++|+|.++.+... +...+..+++|++
T Consensus 178 ~~L~~L~Ls~n~l~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~ 251 (768)
T 3rgz_A 178 GELKHLAISGNKISG----DVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD-FSRAISTCTELKL 251 (768)
T ss_dssp TTCCEEECCSSEEES----CCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCE
T ss_pred CCCCEEECCCCcccc----cCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCE
Confidence 478888886543221 1111111111 66665 2333 68899999999998887643 3344678999999
Q ss_pred EeeeecCCcceEEEeccCCCcceEEEEecCCce-EEEEE----CCceeEEEEeccce----eeecCCCcccceEEEeec
Q 019478 202 LRVVFSLDLLSLKVVGSSVKLKYLDICYCYFME-EVEIS----APSVRSFKYYGPEI----KLRMENVPQLLDISIGGG 271 (340)
Q Consensus 202 L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~-~l~i~----~p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~ 271 (340)
|++.+|.-...... ..+++|++|.+.++. +. .+.-. +++|+.|+++++.. +-.++.+++|+.+.+..+
T Consensus 252 L~Ls~n~l~~~~~~-~~l~~L~~L~L~~n~-l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 328 (768)
T 3rgz_A 252 LNISSNQFVGPIPP-LPLKSLQYLSLAENK-FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328 (768)
T ss_dssp EECCSSCCEESCCC-CCCTTCCEEECCSSE-EEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSS
T ss_pred EECCCCcccCccCc-cccCCCCEEECcCCc-cCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCC
Confidence 99999863221111 144778888887765 22 11111 26677777666532 123455666666666543
No 75
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.73 E-value=3.6e-06 Score=75.04 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=18.9
Q ss_pred hccCCCcceEEEE------cccCCcCCCcceEEEEEcC
Q 019478 284 MSYFHQLETLELG------FVLNAVSILNLKCFRVVNN 315 (340)
Q Consensus 284 l~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~ 315 (340)
+..+++|+.|++. +|..+..+++|++|++.++
T Consensus 237 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 237 LSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSS
T ss_pred hhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCC
Confidence 4456666666665 4444555666666666653
No 76
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.70 E-value=1.3e-05 Score=74.98 Aligned_cols=142 Identities=13% Similarity=0.159 Sum_probs=91.7
Q ss_pred CCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEE--EECCceeE
Q 019478 168 LSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVE--ISAPSVRS 245 (340)
Q Consensus 168 ~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~--i~~p~L~~ 245 (340)
+.++++|++|++.++.+.+-. . +..+++|++|++.+|. +..+..-..+++|++|.++++. +..+. -..++|+.
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~ 160 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADIT--P-LANLTNLTGLTLFNNQ-ITDIDPLKNLTNLNRLELSSNT-ISDISALSGLTSLQQ 160 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSE
T ss_pred hhccccCCEEECCCCccccCh--h-hcCCCCCCEEECCCCC-CCCChHHcCCCCCCEEECCCCc-cCCChhhccCCcccE
Confidence 567888888888877664321 1 6778888888888874 2221112344788888888875 33321 12478888
Q ss_pred EEEecccee-eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE---cc--cCCcCCCcceEEEEEcCCchh
Q 019478 246 FKYYGPEIK-LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG---FV--LNAVSILNLKCFRVVNNFLCF 319 (340)
Q Consensus 246 l~l~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~---~~--~~~~~f~~L~~L~l~~~~~~~ 319 (340)
|.+...... ..++.+++|+.+.+....-..+ ..+..+++|+.|.+. +. ..+..+++|++|++.++.+..
T Consensus 161 L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~ 235 (466)
T 1o6v_A 161 LSFGNQVTDLKPLANLTTLERLDISSNKVSDI-----SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 235 (466)
T ss_dssp EEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred eecCCcccCchhhccCCCCCEEECcCCcCCCC-----hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCccc
Confidence 888644321 2367788888888876521111 235688999999987 11 125578899999998865443
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.70 E-value=1.4e-06 Score=75.53 Aligned_cols=154 Identities=12% Similarity=0.074 Sum_probs=86.0
Q ss_pred CCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcc--eEEEeccCCCcceEEEEecCCceEEEE-----E
Q 019478 167 TLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLL--SLKVVGSSVKLKYLDICYCYFMEEVEI-----S 239 (340)
Q Consensus 167 ~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~--~l~i~~~~~~L~~L~l~~c~~l~~l~i-----~ 239 (340)
.+.++++|++|+|.+..+..-. ...+..+++|++|++.++.-.. ...+ ..+++|+.|.++++. ++.+.+ .
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~l~~~~~~ 147 (276)
T 2z62_A 71 AYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASLENFPI-GHLKTLKELNVAHNL-IQSFKLPEYFSN 147 (276)
T ss_dssp TTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTSCCCCSTTCCC-TTCTTCCEEECCSSC-CCCCCCCGGGGG
T ss_pred HccCCcCCCEEECCCCccCccC-hhhhcCCccccEEECCCCCccccCchhc-ccCCCCCEEECcCCc-cceecCchhhcc
Confidence 4567788888888776543211 1124567888888887774211 1111 233778888888775 444322 1
Q ss_pred CCceeEEEEecccee-e---ecCCCcccceEE--EeeccCchhhhhhhhhhccCCCcceEEEE------cc-cCCcCCCc
Q 019478 240 APSVRSFKYYGPEIK-L---RMENVPQLLDIS--IGGGYGVRMKHAISPIMSYFHQLETLELG------FV-LNAVSILN 306 (340)
Q Consensus 240 ~p~L~~l~l~~~~~~-~---~~~~~~~L~~l~--l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~-~~~~~f~~ 306 (340)
.++|+.|+++++... + .+..+++|+.+. ++.. ...+.......+ ...+|+.|++. ++ ..+..+++
T Consensus 148 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls-~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 225 (276)
T 2z62_A 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS-LNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTS 225 (276)
T ss_dssp CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC-SSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCS
T ss_pred CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC-CCcccccCcccc-CCCcccEEECCCCceeecCHhHhccccc
Confidence 378888888776432 1 233344555332 2221 111111111112 33479999987 33 34567889
Q ss_pred ceEEEEEcCCch-hhhHHHH
Q 019478 307 LKCFRVVNNFLC-FCLILLL 325 (340)
Q Consensus 307 L~~L~l~~~~~~-~c~~l~~ 325 (340)
|++|++.++... .|+.+.+
T Consensus 226 L~~L~l~~N~~~c~c~~l~~ 245 (276)
T 2z62_A 226 LQKIWLHTNPWDCSCPRIDY 245 (276)
T ss_dssp CCEEECCSSCBCCCTTTTHH
T ss_pred ccEEEccCCcccccCCchHH
Confidence 999999986444 5765543
No 78
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.69 E-value=3.6e-05 Score=74.51 Aligned_cols=93 Identities=10% Similarity=0.040 Sum_probs=58.4
Q ss_pred CCcceEEEEecCCceEEEEECCceeEEEEeccceeeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE---
Q 019478 220 VKLKYLDICYCYFMEEVEISAPSVRSFKYYGPEIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG--- 296 (340)
Q Consensus 220 ~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~--- 296 (340)
++|+.|.+.++. ++.+.-..++|++|+++++........+++|+.+++..+ .+..+...+++|+.|++.
T Consensus 201 ~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N-------~L~~lp~~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 201 SELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGN-------RLTSLPMLPSGLLSLSVYRNQ 272 (622)
T ss_dssp TTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-------CCSCCCCCCTTCCEEECCSSC
T ss_pred chhhEEECcCCc-ccccCCCCCCCCEEEccCCccCcCCCCCCcCcEEECCCC-------CCCcCCcccccCcEEeCCCCC
Confidence 455555555553 333333346777777776644322355677777777543 122333467889999887
Q ss_pred ---cccCCcCCCcceEEEEEcCCchhh
Q 019478 297 ---FVLNAVSILNLKCFRVVNNFLCFC 320 (340)
Q Consensus 297 ---~~~~~~~f~~L~~L~l~~~~~~~c 320 (340)
+|..+..+++|+.|++.++.+...
T Consensus 273 L~~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 273 LTRLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp CCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred CCcCCHHHhhccccCEEEecCCCCCCc
Confidence 566677888999999998766543
No 79
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.69 E-value=9.5e-06 Score=75.27 Aligned_cols=41 Identities=24% Similarity=0.386 Sum_probs=36.6
Q ss_pred ccCCcCCCCChHHHHHHHhcCChHHHHHHHHhhhhhhhhcc
Q 019478 16 ILVDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYLWT 56 (340)
Q Consensus 16 ~~~d~~s~LPd~il~~Ils~L~~~d~~r~~~vsk~W~~lw~ 56 (340)
-..|.++.||+|++.+||+||+.+|+++++.|||+|+++..
T Consensus 10 ~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~ 50 (464)
T 3v7d_B 10 LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR 50 (464)
T ss_dssp CCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHT
T ss_pred cccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHc
Confidence 34678899999999999999999999999999999987533
No 80
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.69 E-value=3.1e-05 Score=77.91 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=19.1
Q ss_pred hccCCCcceEEEE-------cccCCcCCCcceEEEEEcCCch
Q 019478 284 MSYFHQLETLELG-------FVLNAVSILNLKCFRVVNNFLC 318 (340)
Q Consensus 284 l~~~~~L~~L~l~-------~~~~~~~f~~L~~L~l~~~~~~ 318 (340)
+.++++|+.|++. .+..+..+++|++|++.++.+.
T Consensus 334 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 3455555555555 1223455667777777765443
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.66 E-value=4.1e-06 Score=72.38 Aligned_cols=141 Identities=16% Similarity=0.101 Sum_probs=97.0
Q ss_pred CCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceEEEE----ECCceeE
Q 019478 172 KSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEEVEI----SAPSVRS 245 (340)
Q Consensus 172 ~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~l~i----~~p~L~~ 245 (340)
++|+.|+|.+..+..-. ...+..+++|++|++.++. ++.+... ..+++|+.|.+.++. ++.+.. ..++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~ 113 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAE 113 (270)
T ss_dssp TTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCE
T ss_pred CCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCE
Confidence 67999999987765311 1125679999999999885 3322111 234899999999886 555432 2489999
Q ss_pred EEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------c-ccCCcCCCcceEEEEEc
Q 019478 246 FKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------F-VLNAVSILNLKCFRVVN 314 (340)
Q Consensus 246 l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~-~~~~~~f~~L~~L~l~~ 314 (340)
|.++++... ..++.+++|+.+.+.... +.......+..+++|+.|++. + +..+..+++|++|++.+
T Consensus 114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (270)
T 2o6q_A 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE---LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred EECCCCccCeeCHHHhCcCcCCCEEECCCCc---CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCC
Confidence 999987432 225678999999987652 111223446789999999998 2 23466788999999988
Q ss_pred CCch
Q 019478 315 NFLC 318 (340)
Q Consensus 315 ~~~~ 318 (340)
+.+.
T Consensus 191 N~l~ 194 (270)
T 2o6q_A 191 NQLK 194 (270)
T ss_dssp SCCS
T ss_pred CcCC
Confidence 5433
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.66 E-value=4.6e-06 Score=71.26 Aligned_cols=141 Identities=12% Similarity=0.139 Sum_probs=79.1
Q ss_pred CCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceEEEE----ECCceeE
Q 019478 172 KSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEEVEI----SAPSVRS 245 (340)
Q Consensus 172 ~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~l~i----~~p~L~~ 245 (340)
++|+.|+|.+..+..-. ...+..+++|++|++.++. +..+.-. ...++|+.|.++++. ++.+.. ..++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 111 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDK 111 (251)
T ss_dssp TTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCE
Confidence 45666666555443211 0113455666666666653 2211100 122566666666554 333221 2367777
Q ss_pred EEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------c-ccCCcCCCcceEEEEEc
Q 019478 246 FKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------F-VLNAVSILNLKCFRVVN 314 (340)
Q Consensus 246 l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~-~~~~~~f~~L~~L~l~~ 314 (340)
|+++++... ..+..+++|+.+.+.... +.......+.++++|+.|+|. + +..+..+++|++|++.+
T Consensus 112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ---LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred EEcCCCcCCCcChhHhccCCcccEEECcCCc---CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 777766332 124667888888886551 111222346688999999998 2 33566788999999999
Q ss_pred CCch
Q 019478 315 NFLC 318 (340)
Q Consensus 315 ~~~~ 318 (340)
+...
T Consensus 189 N~~~ 192 (251)
T 3m19_A 189 NQFD 192 (251)
T ss_dssp CCBC
T ss_pred Ccee
Confidence 7654
No 83
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.65 E-value=2.6e-05 Score=75.51 Aligned_cols=164 Identities=14% Similarity=0.081 Sum_probs=92.5
Q ss_pred hCCCeEEEEEecCCCCCCCCCCceeeecCC--ceEeC-----CCCCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccce
Q 019478 128 AKKVQKLELNLHPVGGGFWPPLELYAFPPE--CLKLF-----RSPRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLA 200 (340)
Q Consensus 128 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~--~L~L~-----~~~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le 200 (340)
..+++.+.+....-.. .+ ..++.. .|.|. .+| ..+++|++|+|.++.++. +. ...++|+
T Consensus 39 ~~~l~~L~ls~n~L~~-----lp-~~l~~~L~~L~L~~N~l~~lp---~~l~~L~~L~Ls~N~l~~--lp---~~l~~L~ 104 (622)
T 3g06_A 39 NNGNAVLNVGESGLTT-----LP-DCLPAHITTLVIPDNNLTSLP---ALPPELRTLEVSGNQLTS--LP---VLPPGLL 104 (622)
T ss_dssp HHCCCEEECCSSCCSC-----CC-SCCCTTCSEEEECSCCCSCCC---CCCTTCCEEEECSCCCSC--CC---CCCTTCC
T ss_pred CCCCcEEEecCCCcCc-----cC-hhhCCCCcEEEecCCCCCCCC---CcCCCCCEEEcCCCcCCc--CC---CCCCCCC
Confidence 3468888875443221 11 111111 56665 333 267788888888776642 11 1567888
Q ss_pred EEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEECCceeEEEEeccceeeecCCCcccceEEEeeccCchhhhhh
Q 019478 201 RLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKYYGPEIKLRMENVPQLLDISIGGGYGVRMKHAI 280 (340)
Q Consensus 201 ~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 280 (340)
.|++.++. ++. ++...++|+.|.+.++. ++.+....++|++|+++++.........++|+.+.+..+ .+
T Consensus 105 ~L~Ls~N~-l~~--l~~~l~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N-------~l 173 (622)
T 3g06_A 105 ELSIFSNP-LTH--LPALPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNN-------QL 173 (622)
T ss_dssp EEEECSCC-CCC--CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-------CC
T ss_pred EEECcCCc-CCC--CCCCCCCcCEEECCCCC-CCcCCCCCCCCCEEECcCCcCCCcCCccCCCCEEECCCC-------CC
Confidence 88888774 222 12234778888888775 555554558888888887754332345567777766543 12
Q ss_pred hhhhccCCCcceEEEE---cccCCcCCCcceEEEEEcCC
Q 019478 281 SPIMSYFHQLETLELG---FVLNAVSILNLKCFRVVNNF 316 (340)
Q Consensus 281 ~~ll~~~~~L~~L~l~---~~~~~~~f~~L~~L~l~~~~ 316 (340)
..+...+++|+.|++. +......+++|+.|.+.++.
T Consensus 174 ~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~ 212 (622)
T 3g06_A 174 TSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNR 212 (622)
T ss_dssp SCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred CCCcccCCCCcEEECCCCCCCCCCCccchhhEEECcCCc
Confidence 2233456777777776 22222233455555555533
No 84
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.63 E-value=4.6e-05 Score=76.69 Aligned_cols=42 Identities=7% Similarity=-0.051 Sum_probs=21.8
Q ss_pred CCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecC
Q 019478 166 RTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSL 208 (340)
Q Consensus 166 ~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~ 208 (340)
..+.++++|+.|+|.++.+..-. ...+.++++|+.|++.++.
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAIIQ-DQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCCCC-SSCSCSCCCCCEEEEETCC
T ss_pred HHhcCCCCCCEEECCCCCCCccC-hhhhcCCCCCCEEECCCCC
Confidence 34556666666666655442210 0013446666666666653
No 85
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.63 E-value=3.3e-06 Score=81.60 Aligned_cols=141 Identities=16% Similarity=0.212 Sum_probs=100.3
Q ss_pred CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEE--ECCceeEE
Q 019478 169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEI--SAPSVRSF 246 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i--~~p~L~~l 246 (340)
..+++|+.|++.++.+.+- .. +..+++|+.|+|.+|. +..+.--..+++|+.|.++++. +..+.- ..++|+.|
T Consensus 40 ~~L~~L~~L~l~~n~i~~l--~~-l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L 114 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV--QG-IQYLPNVTKLFLNGNK-LTDIKPLTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSL 114 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC--TT-GGGCTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEE
T ss_pred hcCCCCCEEECcCCCCCCC--hH-HccCCCCCEEEeeCCC-CCCChhhccCCCCCEEECcCCC-CCCChhhccCCCCCEE
Confidence 4678999999988776431 12 6779999999999985 2221112355899999999986 444321 24899999
Q ss_pred EEecccee--eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEcCCch
Q 019478 247 KYYGPEIK--LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNNFLC 318 (340)
Q Consensus 247 ~l~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~~~ 318 (340)
.++++... -.+..+++|+.+.|..+.-.. + ..+..+++|+.|+|. ++. +..+++|++|+|.++.+.
T Consensus 115 ~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~----l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 115 SLEHNGISDINGLVHLPQLESLYLGNNKITD----I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp ECTTSCCCCCGGGGGCTTCSEEECCSSCCCC----C-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred EecCCCCCCCccccCCCccCEEECCCCccCC----c-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCC
Confidence 99887542 136678999999997652211 1 456789999999998 222 778899999999986555
Q ss_pred hh
Q 019478 319 FC 320 (340)
Q Consensus 319 ~c 320 (340)
..
T Consensus 189 ~l 190 (605)
T 1m9s_A 189 DL 190 (605)
T ss_dssp BC
T ss_pred CC
Confidence 43
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.60 E-value=3.6e-05 Score=65.02 Aligned_cols=141 Identities=15% Similarity=0.102 Sum_probs=91.6
Q ss_pred CCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE--eccCCCcceEEEEecCCceEEEE----ECCceeE
Q 019478 172 KSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV--VGSSVKLKYLDICYCYFMEEVEI----SAPSVRS 245 (340)
Q Consensus 172 ~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~l~i----~~p~L~~ 245 (340)
++|++|+|.+..+..-. ...+.++++|++|++.++..++.+.- -..+++|++|.+.+|..++.+.. ..++|+.
T Consensus 31 ~~l~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEEC-TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEEC-HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 48999999987654311 11256799999999999964544321 12458999999999655776642 3589999
Q ss_pred EEEeccceee--ecCCCcccc---eEEEeeccCchhhhhhhhhhccCCCcc-eEEEE------cccCCcCCCcceEEEEE
Q 019478 246 FKYYGPEIKL--RMENVPQLL---DISIGGGYGVRMKHAISPIMSYFHQLE-TLELG------FVLNAVSILNLKCFRVV 313 (340)
Q Consensus 246 l~l~~~~~~~--~~~~~~~L~---~l~l~~~~~~~~~~~~~~ll~~~~~L~-~L~l~------~~~~~~~f~~L~~L~l~ 313 (340)
|.+.++.... .++.+++|+ .+.+.... .+.......+.++++|+ .|++. ++.......+|++|++.
T Consensus 110 L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~--~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNP--YMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEEECCCSCCCCTTCCBCCSEEEEEEESCT--TCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred EeCCCCCCccccccccccccccccEEECCCCc--chhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence 9999874321 155677777 77775430 11222233456788888 88886 33332233677777777
Q ss_pred cC
Q 019478 314 NN 315 (340)
Q Consensus 314 ~~ 315 (340)
++
T Consensus 188 ~n 189 (239)
T 2xwt_C 188 KN 189 (239)
T ss_dssp TC
T ss_pred CC
Confidence 65
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.56 E-value=5.6e-06 Score=72.49 Aligned_cols=142 Identities=15% Similarity=0.187 Sum_probs=100.0
Q ss_pred CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEE--EECCceeEE
Q 019478 169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVE--ISAPSVRSF 246 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~--i~~p~L~~l 246 (340)
..+++|+.|++.++.+.+- .. +..+++|++|++.++.- +.+.--..+++|+.|.++++. ++.+. -..++|+.|
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~-~~~l~~L~~L~L~~n~l-~~~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L 117 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QG-IQYLPNVTKLFLNGNKL-TDIKPLANLKNLGWLFLDENK-VKDLSSLKDLKKLKSL 117 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TT-GGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEE
T ss_pred hhcCcccEEEccCCCcccC--hh-HhcCCCCCEEEccCCcc-CCCcccccCCCCCEEECCCCc-CCCChhhccCCCCCEE
Confidence 4678999999988776432 22 56799999999999852 221113345899999999886 44321 124899999
Q ss_pred EEecccee--eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEcCCch
Q 019478 247 KYYGPEIK--LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNNFLC 318 (340)
Q Consensus 247 ~l~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~~~ 318 (340)
+++++... -.+..+++|+.+.+..+.-.. + ..+..+++|+.|++. ++. +..+++|++|.+.++.+.
T Consensus 118 ~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~----~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDINGLVHLPQLESLYLGNNKITD----I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCCGGGGGCTTCCEEECCSSCCCC----C-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCChhhcCCCCCCEEEccCCcCCc----c-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCC
Confidence 99887532 135678899999887652111 1 346789999999998 222 778899999999997665
Q ss_pred hhh
Q 019478 319 FCL 321 (340)
Q Consensus 319 ~c~ 321 (340)
..+
T Consensus 192 ~l~ 194 (291)
T 1h6t_A 192 DLR 194 (291)
T ss_dssp BCG
T ss_pred CCh
Confidence 543
No 88
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.54 E-value=5.5e-05 Score=70.48 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=13.8
Q ss_pred CCcceEEEEecCCceEEEEECCceeEEEEecc
Q 019478 220 VKLKYLDICYCYFMEEVEISAPSVRSFKYYGP 251 (340)
Q Consensus 220 ~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~~~ 251 (340)
++|+.|.++++. ++.+.-..++|+.|+++++
T Consensus 277 ~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N 307 (454)
T 1jl5_A 277 QSLTFLDVSENI-FSGLSELPPNLYYLNASSN 307 (454)
T ss_dssp TTCCEEECCSSC-CSEESCCCTTCCEEECCSS
T ss_pred CcCCEEECcCCc-cCcccCcCCcCCEEECcCC
Confidence 455555555543 3332212245555555444
No 89
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.54 E-value=6.7e-06 Score=68.03 Aligned_cols=138 Identities=15% Similarity=0.135 Sum_probs=74.7
Q ss_pred CCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceEEEEECCceeEEEE
Q 019478 171 IKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEEVEISAPSVRSFKY 248 (340)
Q Consensus 171 ~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l 248 (340)
.++|++|++.+..+..- ....+..+++|++|++.++. ++.+.-. ..+++|+.|.++++. ++.+.
T Consensus 27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~----------- 92 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQ-LQSLP----------- 92 (208)
T ss_dssp CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCC-----------
T ss_pred CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCc-CCccC-----------
Confidence 46788888887766421 12234668888888888874 2221110 123566666666554 22211
Q ss_pred eccceeeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cc-cCCcCCCcceEEEEEcC-Cchhh
Q 019478 249 YGPEIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FV-LNAVSILNLKCFRVVNN-FLCFC 320 (340)
Q Consensus 249 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~-~~~~~f~~L~~L~l~~~-~~~~c 320 (340)
...++.+++|+.+.+.... +.......+..+++|+.|++. ++ ..+..+++|++|++.++ ..+.|
T Consensus 93 -----~~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 164 (208)
T 2o6s_A 93 -----NGVFDKLTQLKELALNTNQ---LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 164 (208)
T ss_dssp -----TTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred -----HhHhcCccCCCEEEcCCCc---CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC
Confidence 1113455566666554331 111122234566777777776 22 23556778888888774 34456
Q ss_pred hHHHHHHHHh
Q 019478 321 LILLLFLRKI 330 (340)
Q Consensus 321 ~~l~~~~l~~ 330 (340)
+.++.+.+..
T Consensus 165 ~~l~~L~~~~ 174 (208)
T 2o6s_A 165 PGIRYLSEWI 174 (208)
T ss_dssp TTTHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 7776665443
No 90
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.51 E-value=3e-06 Score=78.90 Aligned_cols=166 Identities=12% Similarity=0.081 Sum_probs=103.9
Q ss_pred CCCCCCCceEEeeeEEecHHH---HHHHHhcCccceEEeeeecCCcceE---EEeccCC----CcceEEEEecCCceEEE
Q 019478 168 LSNIKSLRSLCLDAVNVSGEV---LEFFIYSCPLLARLRVVFSLDLLSL---KVVGSSV----KLKYLDICYCYFMEEVE 237 (340)
Q Consensus 168 ~~~~~~L~~L~L~~~~i~~~~---l~~lls~cp~Le~L~L~~c~~~~~l---~i~~~~~----~L~~L~l~~c~~l~~l~ 237 (340)
+..+++|++|+|.++.+++.+ +...+..+++|++|++.++. ++.. .+....+ +|++|.+++|. +++..
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~ 101 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAG 101 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGG
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHH
Confidence 356789999999998888763 55667778999999999875 3221 1111122 69999999886 43210
Q ss_pred --------EECCceeEEEEecccee---------eecCCCcccceEEEeecc-CchhhhhhhhhhccCCCcceEEEE---
Q 019478 238 --------ISAPSVRSFKYYGPEIK---------LRMENVPQLLDISIGGGY-GVRMKHAISPIMSYFHQLETLELG--- 296 (340)
Q Consensus 238 --------i~~p~L~~l~l~~~~~~---------~~~~~~~~L~~l~l~~~~-~~~~~~~~~~ll~~~~~L~~L~l~--- 296 (340)
-..++|++|+++++... ......++|+++++..+. .......+...+..+++|+.|++.
T Consensus 102 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 102 CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 13589999999877431 112235679988887662 111122455667788999999998
Q ss_pred c----ccCCc-----CCCcceEEEEEcCCchhhhH-HHHHHHHhccccc
Q 019478 297 F----VLNAV-----SILNLKCFRVVNNFLCFCLI-LLLFLRKICNSHN 335 (340)
Q Consensus 297 ~----~~~~~-----~f~~L~~L~l~~~~~~~c~~-l~~~~l~~cp~~~ 335 (340)
+ ...+. ..++|++|++.++.+..-.. -..-.+..|++++
T Consensus 182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 230 (461)
T 1z7x_W 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 230 (461)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc
Confidence 1 11111 35599999998865553211 1222455677654
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.51 E-value=4.3e-05 Score=62.57 Aligned_cols=65 Identities=18% Similarity=0.225 Sum_probs=38.1
Q ss_pred CCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecC
Q 019478 166 RTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCY 231 (340)
Q Consensus 166 ~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~ 231 (340)
..+..+++|++|++.++.+++..... +..+++|++|++.+|..++.+..-..+++|+.|.+++|.
T Consensus 106 ~~l~~l~~L~~L~Ls~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 106 PNLSGLTSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG 170 (197)
T ss_dssp CCCTTCTTCCEEECCSSBCBGGGHHH-HTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC
T ss_pred hhhcCCCCCCEEEecCCccCcHhHHH-HhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC
Confidence 34456777777777777666543332 456777777777777534333211233566666666554
No 92
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.49 E-value=3.4e-05 Score=77.48 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=69.5
Q ss_pred CCCeEEEEEecCCCCCCCCCCceeeecCCceEeCCCCCCCCCCCCCceEEeeeEE-ecH----HHHHHHH---hcCccce
Q 019478 129 KKVQKLELNLHPVGGGFWPPLELYAFPPECLKLFRSPRTLSNIKSLRSLCLDAVN-VSG----EVLEFFI---YSCPLLA 200 (340)
Q Consensus 129 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~L~~~~~~~~~~~~L~~L~L~~~~-i~~----~~l~~ll---s~cp~Le 200 (340)
++++.|.+..+...+ .+|..+.++++|+.|+|.++. ++. ..+..+- ..+|+|+
T Consensus 491 ~~L~~L~Ls~N~l~~-------------------~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~ 551 (876)
T 4ecn_A 491 KDLTDVELYNCPNMT-------------------QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551 (876)
T ss_dssp TTCCEEEEESCTTCC-------------------SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCC
T ss_pred CCCCEEECcCCCCCc-------------------cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCcc
Confidence 478888887664332 334445677888888888776 554 2233322 3456888
Q ss_pred EEeeeecCCcceEEE---eccCCCcceEEEEecCCceEEE-E-ECCceeEEEEecccee---eecCCCcc-cceEEEeec
Q 019478 201 RLRVVFSLDLLSLKV---VGSSVKLKYLDICYCYFMEEVE-I-SAPSVRSFKYYGPEIK---LRMENVPQ-LLDISIGGG 271 (340)
Q Consensus 201 ~L~L~~c~~~~~l~i---~~~~~~L~~L~l~~c~~l~~l~-i-~~p~L~~l~l~~~~~~---~~~~~~~~-L~~l~l~~~ 271 (340)
.|++.++.- ..+.- -..+++|+.|.++++. +..+. + ..++|+.|.++++... -.+..+++ |+.+.+..+
T Consensus 552 ~L~Ls~N~L-~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 552 IFYMGYNNL-EEFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp EEECCSSCC-CBCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSS
T ss_pred EEEeeCCcC-CccCChhhhhcCCCCCEEECCCCC-cccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCC
Confidence 888887752 22111 1134677777777765 33332 1 1367777777766332 12344555 666666544
No 93
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.49 E-value=1.1e-05 Score=62.82 Aligned_cols=37 Identities=19% Similarity=0.108 Sum_probs=18.4
Q ss_pred CCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeec
Q 019478 171 IKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFS 207 (340)
Q Consensus 171 ~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c 207 (340)
.++|+.|++.++.+.+..+...+..+++|+.|++.+|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 52 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV 52 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC
Confidence 3555555555555543233333344555555555555
No 94
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.47 E-value=6.2e-05 Score=69.47 Aligned_cols=38 Identities=26% Similarity=0.485 Sum_probs=35.5
Q ss_pred cCCcCCCCChHHHHHHHhcCChHHHHHHHHhhhhhhhh
Q 019478 17 LVDWISRLPDEILVNIISRLAVREAARTSVLSSRWKYL 54 (340)
Q Consensus 17 ~~d~~s~LPd~il~~Ils~L~~~d~~r~~~vsk~W~~l 54 (340)
..|.++.||+|++.+||+||+.+|+++++.|||+|+.+
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 46889999999999999999999999999999999863
No 95
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.47 E-value=8.9e-05 Score=59.47 Aligned_cols=127 Identities=12% Similarity=0.026 Sum_probs=61.6
Q ss_pred CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEECCceeEEEE
Q 019478 169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKY 248 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l 248 (340)
.++++|+.|++.++.+.. +..+...+|+|+.|++.++. ++.+..-..+++|+.|.++++. ++.+.
T Consensus 16 ~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~~~----------- 80 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR-ICRIG----------- 80 (176)
T ss_dssp ECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC-CCEEC-----------
T ss_pred CCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCc-ccccC-----------
Confidence 345666666666555442 22222334466666666653 2222111122344444444432 22110
Q ss_pred eccceeeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------ccc----CCcCCCcceEEEEEcCCc
Q 019478 249 YGPEIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVL----NAVSILNLKCFRVVNNFL 317 (340)
Q Consensus 249 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~----~~~~f~~L~~L~l~~~~~ 317 (340)
...++.+++|+.+++....-..+.. ...+..+++|+.|.+. .+. .+..+++|+.|++..+..
T Consensus 81 -----~~~~~~l~~L~~L~L~~N~i~~~~~--~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 81 -----EGLDQALPDLTELILTNNSLVELGD--LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp -----SCHHHHCTTCCEEECCSCCCCCGGG--GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred -----cchhhcCCCCCEEECCCCcCCcchh--hHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 0113456777777776541111111 1245578888888887 233 255677788887776443
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.45 E-value=6.2e-06 Score=74.49 Aligned_cols=142 Identities=13% Similarity=0.090 Sum_probs=79.0
Q ss_pred CCCceEEeeeEEecH---HHHHHHHhcC-ccceEEeeeecCCcceEEEec------c-CCCcceEEEEecCCceEEEE--
Q 019478 172 KSLRSLCLDAVNVSG---EVLEFFIYSC-PLLARLRVVFSLDLLSLKVVG------S-SVKLKYLDICYCYFMEEVEI-- 238 (340)
Q Consensus 172 ~~L~~L~L~~~~i~~---~~l~~lls~c-p~Le~L~L~~c~~~~~l~i~~------~-~~~L~~L~l~~c~~l~~l~i-- 238 (340)
++|++|+|.++.+++ ..+...+..+ +.|++|++.+|. ++...... . ..+|++|.+++|. +++...
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~ 157 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDE 157 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHH
Confidence 777777777776654 2344445555 677777777775 22211110 0 2577788777765 332111
Q ss_pred ------EC-CceeEEEEeccceee--------ecCCC-cccceEEEeecc--Cchhhhhhhhhhcc-CCCcceEEEE---
Q 019478 239 ------SA-PSVRSFKYYGPEIKL--------RMENV-PQLLDISIGGGY--GVRMKHAISPIMSY-FHQLETLELG--- 296 (340)
Q Consensus 239 ------~~-p~L~~l~l~~~~~~~--------~~~~~-~~L~~l~l~~~~--~~~~~~~~~~ll~~-~~~L~~L~l~--- 296 (340)
.. ++|++|+++++...- .+... ++|+.+++..+. .... ..+...+.. .++|+.|++.
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~-~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY-AELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH-HHHHHHHHHSCTTCCEEECCSSC
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH-HHHHHHHhcCCCCceEEECcCCC
Confidence 12 378888887763210 12233 478888776551 1111 123333333 4588888887
Q ss_pred --------cccCCcCCCcceEEEEEcCC
Q 019478 297 --------FVLNAVSILNLKCFRVVNNF 316 (340)
Q Consensus 297 --------~~~~~~~f~~L~~L~l~~~~ 316 (340)
+...+..+++|++|++.++.
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 12334667788888888743
No 97
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.43 E-value=3.4e-05 Score=71.10 Aligned_cols=37 Identities=27% Similarity=0.486 Sum_probs=34.5
Q ss_pred cCCcCCCCChH----HHHHHHhcCChHHHHHHHHhhhhhhh
Q 019478 17 LVDWISRLPDE----ILVNIISRLAVREAARTSVLSSRWKY 53 (340)
Q Consensus 17 ~~d~~s~LPd~----il~~Ils~L~~~d~~r~~~vsk~W~~ 53 (340)
..|.++.||+| |+.+||+||+.++++++++|||+|++
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~ 47 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR 47 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 46778899999 99999999999999999999999984
No 98
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.42 E-value=4.8e-06 Score=77.51 Aligned_cols=161 Identities=16% Similarity=0.144 Sum_probs=87.6
Q ss_pred CCceEEeeeEEecHHH---HHHHHhcCccceEEeeeecCCcceEE---E----eccCCCcceEEEEecCCceEEE-----
Q 019478 173 SLRSLCLDAVNVSGEV---LEFFIYSCPLLARLRVVFSLDLLSLK---V----VGSSVKLKYLDICYCYFMEEVE----- 237 (340)
Q Consensus 173 ~L~~L~L~~~~i~~~~---l~~lls~cp~Le~L~L~~c~~~~~l~---i----~~~~~~L~~L~l~~c~~l~~l~----- 237 (340)
+|++|+|.++.+++.+ +...+..+++|++|++.++. ++... + .....+|++|.+++|. ++...
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~ 163 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLA 163 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHH
Confidence 5777777666666532 34445566677777776664 22100 0 1112357777777664 32211
Q ss_pred ---EECCceeEEEEeccceee----ec-----CCCcccceEEEeecc-CchhhhhhhhhhccCCCcceEEEE---c----
Q 019478 238 ---ISAPSVRSFKYYGPEIKL----RM-----ENVPQLLDISIGGGY-GVRMKHAISPIMSYFHQLETLELG---F---- 297 (340)
Q Consensus 238 ---i~~p~L~~l~l~~~~~~~----~~-----~~~~~L~~l~l~~~~-~~~~~~~~~~ll~~~~~L~~L~l~---~---- 297 (340)
-..++|+.|+++++...- .+ ...++|+++++..+. .......+...+..+++|++|++. +
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 013788888887764210 01 124578888776551 111112345566788999999987 1
Q ss_pred -----ccCCcCCCcceEEEEEcCCchhhh-HHHHHHHHhccccc
Q 019478 298 -----VLNAVSILNLKCFRVVNNFLCFCL-ILLLFLRKICNSHN 335 (340)
Q Consensus 298 -----~~~~~~f~~L~~L~l~~~~~~~c~-~l~~~~l~~cp~~~ 335 (340)
+.....+++|++|++.++.+..-. ....-.+..||+++
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 287 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 287 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcc
Confidence 122235789999999886554321 11222356677654
No 99
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.42 E-value=7.5e-06 Score=82.22 Aligned_cols=93 Identities=13% Similarity=0.135 Sum_probs=44.1
Q ss_pred CcceEEEEecCCceEEEE-----ECCceeEEEEecccee-e-ecCCCcccceEEEeeccCchhhhhhhhhhccCCC-cce
Q 019478 221 KLKYLDICYCYFMEEVEI-----SAPSVRSFKYYGPEIK-L-RMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQ-LET 292 (340)
Q Consensus 221 ~L~~L~l~~c~~l~~l~i-----~~p~L~~l~l~~~~~~-~-~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~-L~~ 292 (340)
+|+.|.++++. +..+.- ..++|+.|.++++... + .++.+++|+.+.+.... +. .+...+.++++ |+.
T Consensus 549 ~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~---l~-~lp~~l~~l~~~L~~ 623 (876)
T 4ecn_A 549 KIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQ---IE-EIPEDFCAFTDQVEG 623 (876)
T ss_dssp TCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSC---CS-CCCTTSCEECTTCCE
T ss_pred CccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCc---cc-cchHHHhhccccCCE
Confidence 45555555544 333322 1355666665554221 1 34455556655554331 11 12223445666 777
Q ss_pred EEEE------cccCCcCCC--cceEEEEEcCCch
Q 019478 293 LELG------FVLNAVSIL--NLKCFRVVNNFLC 318 (340)
Q Consensus 293 L~l~------~~~~~~~f~--~L~~L~l~~~~~~ 318 (340)
|++. +|..+.... +|++|++.++.+.
T Consensus 624 L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 624 LGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp EECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred EECcCCCCCcCchhhhccccCCCCEEECcCCcCC
Confidence 7776 333333332 3777777665443
No 100
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.42 E-value=0.00018 Score=67.93 Aligned_cols=174 Identities=11% Similarity=0.086 Sum_probs=91.8
Q ss_pred HHHHHHHh-CCCeEEEEEecCCCCCCCCCCceeeecCC-ceEeC------CCCCCCCCCCCCceEEeeeEEecH-HHHHH
Q 019478 121 HWIFTALA-KKVQKLELNLHPVGGGFWPPLELYAFPPE-CLKLF------RSPRTLSNIKSLRSLCLDAVNVSG-EVLEF 191 (340)
Q Consensus 121 ~w~~~~~~-~~l~~L~l~~~~~~~~~~~~~~~~~~~~~-~L~L~------~~~~~~~~~~~L~~L~L~~~~i~~-~~l~~ 191 (340)
.++..... ..++.|.+..+..... .....++.- .|.++ ..|..+..+++|++|+|.++.+.+ ..+..
T Consensus 293 ~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 368 (520)
T 2z7x_B 293 SYIYEIFSNMNIKNFTVSGTRMVHM----LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE 368 (520)
T ss_dssp HHHHHHHHTCCCSEEEEESSCCCCC----CCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHH
T ss_pred hhhhcccccCceeEEEcCCCccccc----cchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchH
Confidence 34444433 5799999986643220 000111111 55554 234455677777777777766653 23444
Q ss_pred HHhcCccceEEeeeecCCcceEE--EeccCCCcceEEEEecCCceEEEEECCceeEEEEeccceeeecCCC-cccceEEE
Q 019478 192 FIYSCPLLARLRVVFSLDLLSLK--VVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKYYGPEIKLRMENV-PQLLDISI 268 (340)
Q Consensus 192 lls~cp~Le~L~L~~c~~~~~l~--i~~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~~~~~~~~~~~~-~~L~~l~l 268 (340)
.+..+++|++|++.++.-...+. .-...++|+.|.++++. +. ....... ++|+.+.+
T Consensus 369 ~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~-l~-------------------~~~~~~l~~~L~~L~L 428 (520)
T 2z7x_B 369 MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI-LT-------------------DTIFRCLPPRIKVLDL 428 (520)
T ss_dssp HHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC-CC-------------------GGGGGSCCTTCCEEEC
T ss_pred HHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC-CC-------------------cchhhhhcccCCEEEC
Confidence 56667777777777764211010 00122455555555554 11 0011111 46666666
Q ss_pred eeccCchhhhhhhhhhccCCCcceEEEE------cccC-CcCCCcceEEEEEcCCch-hhhH
Q 019478 269 GGGYGVRMKHAISPIMSYFHQLETLELG------FVLN-AVSILNLKCFRVVNNFLC-FCLI 322 (340)
Q Consensus 269 ~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~-~~~f~~L~~L~l~~~~~~-~c~~ 322 (340)
....- . .+..-+.++++|+.|++. +|.. +..+++|++|++.++... .|+.
T Consensus 429 s~N~l---~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 429 HSNKI---K-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CSSCC---C-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCCcc---c-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 54311 1 112222378888888887 4443 677889999999997554 4653
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.42 E-value=4e-05 Score=65.94 Aligned_cols=36 Identities=19% Similarity=0.127 Sum_probs=18.0
Q ss_pred CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeec
Q 019478 169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFS 207 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c 207 (340)
..+++|+.|+|.++.+.+-. . +..+++|+.|++.++
T Consensus 60 ~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 60 QFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRN 95 (263)
T ss_dssp GGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSS
T ss_pred hhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCC
Confidence 45555555555555443211 1 445555555555555
No 102
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.41 E-value=0.00021 Score=67.58 Aligned_cols=148 Identities=10% Similarity=0.048 Sum_probs=91.6
Q ss_pred CCCCCCCceEEeeeEEecHHHHHHHHhc--CccceEEeeeecCCcceE--EE----eccCC-------------------
Q 019478 168 LSNIKSLRSLCLDAVNVSGEVLEFFIYS--CPLLARLRVVFSLDLLSL--KV----VGSSV------------------- 220 (340)
Q Consensus 168 ~~~~~~L~~L~L~~~~i~~~~l~~lls~--cp~Le~L~L~~c~~~~~l--~i----~~~~~------------------- 220 (340)
+..+++|+.|++.++.+.+..+..+... ++.|++|++.+|.-.+.+ .+ ...++
T Consensus 216 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~ 295 (520)
T 2z7x_B 216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295 (520)
T ss_dssp GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHH
T ss_pred hccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhh
Confidence 4567889999998888888766655543 678999999988411000 00 01112
Q ss_pred -------CcceEEEEecCCceEEE--EECCceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccC
Q 019478 221 -------KLKYLDICYCYFMEEVE--ISAPSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYF 287 (340)
Q Consensus 221 -------~L~~L~l~~c~~l~~l~--i~~p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~ 287 (340)
+|+.|.++++. +..+. -..++|++|+++++.. +..++.+++|+.+.+....-..+ ..+...+.++
T Consensus 296 ~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~~~l 373 (520)
T 2z7x_B 296 YEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL-SKIAEMTTQM 373 (520)
T ss_dssp HHHHHTCCCSEEEEESSC-CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH-HHHHHHHTTC
T ss_pred hcccccCceeEEEcCCCc-cccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc-ccchHHHhhC
Confidence 35555555554 22222 2357888888887743 22356778888888865521111 1233456788
Q ss_pred CCcceEEEE-------ccc-CCcCCCcceEEEEEcCCc
Q 019478 288 HQLETLELG-------FVL-NAVSILNLKCFRVVNNFL 317 (340)
Q Consensus 288 ~~L~~L~l~-------~~~-~~~~f~~L~~L~l~~~~~ 317 (340)
++|+.|++. ++. .+..+++|++|++.++.+
T Consensus 374 ~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l 411 (520)
T 2z7x_B 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411 (520)
T ss_dssp TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCC
T ss_pred CCCCEEECCCCcCCcccccchhccCccCCEEECcCCCC
Confidence 999999987 222 255678899999988655
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.39 E-value=0.00015 Score=69.37 Aligned_cols=142 Identities=13% Similarity=-0.026 Sum_probs=80.8
Q ss_pred CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEECCceeEEEE
Q 019478 169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKY 248 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l 248 (340)
..+++|++|+|.++.++. +.. + +.+|+.|++.++. ++. ++..+++|+.|.++++. ++.+.-..++|+.|.+
T Consensus 97 ~~l~~L~~L~Ls~N~l~~--ip~-l--~~~L~~L~Ls~N~-l~~--lp~~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~L 167 (571)
T 3cvr_A 97 ELPASLEYLDACDNRLST--LPE-L--PASLKHLDVDNNQ-LTM--LPELPALLEYINADNNQ-LTMLPELPTSLEVLSV 167 (571)
T ss_dssp CCCTTCCEEECCSSCCSC--CCC-C--CTTCCEEECCSSC-CSC--CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEEC
T ss_pred cccCCCCEEEccCCCCCC--cch-h--hcCCCEEECCCCc-CCC--CCCcCccccEEeCCCCc-cCcCCCcCCCcCEEEC
Confidence 456788888887766543 222 2 2278888888774 222 22244778888887775 4444444578888888
Q ss_pred eccceeeecCCCcccceEEEeeccCchhhhhhh-hhhccCCCcceEEEE------cccCCcCCCcceEEEEEcCCchhh
Q 019478 249 YGPEIKLRMENVPQLLDISIGGGYGVRMKHAIS-PIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNNFLCFC 320 (340)
Q Consensus 249 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~-~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~~~~c 320 (340)
+++.......-.++|+.+++..+.-..+.. +. .+....+.|+.|+|. +|..+..+++|+.|++.+|.+...
T Consensus 168 s~N~L~~lp~l~~~L~~L~Ls~N~L~~lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 168 RNNQLTFLPELPESLEALDVSTNLLESLPA-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp CSSCCSCCCCCCTTCCEEECCSSCCSSCCC-CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred CCCCCCCcchhhCCCCEEECcCCCCCchhh-HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 777431111112677777776541111111 10 111112223888887 566666788999999998766543
No 104
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.38 E-value=1.8e-05 Score=63.56 Aligned_cols=58 Identities=10% Similarity=-0.033 Sum_probs=40.6
Q ss_pred CCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEE--EeccCCCcceEEEEecC
Q 019478 170 NIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLK--VVGSSVKLKYLDICYCY 231 (340)
Q Consensus 170 ~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~--i~~~~~~L~~L~l~~c~ 231 (340)
..++|+.|+|.++.+.+ + .-+..+++|+.|++.++. ++.+. +-..+++|+.|.++++.
T Consensus 40 ~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 99 (176)
T 1a9n_A 40 TLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNS 99 (176)
T ss_dssp GTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSCC
T ss_pred cCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCCc
Confidence 34599999999887654 2 235679999999999985 44321 11234788888887775
No 105
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.38 E-value=1.3e-05 Score=78.60 Aligned_cols=151 Identities=11% Similarity=0.125 Sum_probs=73.0
Q ss_pred CCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCc-------------ceEEE-----------e---c
Q 019478 165 PRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDL-------------LSLKV-----------V---G 217 (340)
Q Consensus 165 ~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~-------------~~l~i-----------~---~ 217 (340)
|..+.++++|+.|+|.+..+...--...+.++++|++|++.+|.-. ..+.+ + .
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence 3445677778888877655432110112456777777777766410 00000 0 0
Q ss_pred cCCCcceEEEEecCCceEEEE----ECCceeEEEEeccceee------------ecCCCcccceEEEeeccCchhhhhhh
Q 019478 218 SSVKLKYLDICYCYFMEEVEI----SAPSVRSFKYYGPEIKL------------RMENVPQLLDISIGGGYGVRMKHAIS 281 (340)
Q Consensus 218 ~~~~L~~L~l~~c~~l~~l~i----~~p~L~~l~l~~~~~~~------------~~~~~~~L~~l~l~~~~~~~~~~~~~ 281 (340)
.+++|+.|.++++. ++.+.- ..++|+.|+++++.... .++++++|+.+++.... +.....
T Consensus 478 ~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~---l~~i~~ 553 (680)
T 1ziw_A 478 PLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG---FDEIPV 553 (680)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC---CCCCCT
T ss_pred cCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC---CCCCCH
Confidence 12345555554443 222211 12556666665543211 13455666666654431 111112
Q ss_pred hhhccCCCcceEEEE------cc-cCCcCCCcceEEEEEcCCchh
Q 019478 282 PIMSYFHQLETLELG------FV-LNAVSILNLKCFRVVNNFLCF 319 (340)
Q Consensus 282 ~ll~~~~~L~~L~l~------~~-~~~~~f~~L~~L~l~~~~~~~ 319 (340)
..+.++++|+.|++. ++ ..+..+++|+.|++.++.+..
T Consensus 554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred HHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence 335567777777776 22 223456677777777654443
No 106
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.37 E-value=0.00027 Score=67.54 Aligned_cols=148 Identities=14% Similarity=0.076 Sum_probs=88.6
Q ss_pred CCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceE-EEe---ccCCCcceEEEEecCCceE-EE----EE
Q 019478 169 SNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSL-KVV---GSSVKLKYLDICYCYFMEE-VE----IS 239 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l-~i~---~~~~~L~~L~l~~c~~l~~-l~----i~ 239 (340)
..+++|++|++.+..+.+.. ...+..+++|+.|++.++. ++.+ .++ ...++|+.|.++++. ++. +. ..
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~ 426 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSV-FQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAW 426 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTT-TTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCC
T ss_pred cCCCCceEEECCCCccccch-hhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcC
Confidence 56677777777776665421 1223567777777777764 2211 111 233677777777665 322 22 12
Q ss_pred CCceeEEEEeccce-eeecCCC-cccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccC-CcCCCcceEE
Q 019478 240 APSVRSFKYYGPEI-KLRMENV-PQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLN-AVSILNLKCF 310 (340)
Q Consensus 240 ~p~L~~l~l~~~~~-~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~-~~~f~~L~~L 310 (340)
.++|+.|.++++.. ...+... ++|+.+++.... +.. +..-+.++++|+.|++. +|.. +..+++|+.|
T Consensus 427 l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~---l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 427 AESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNR---IMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYI 502 (562)
T ss_dssp CTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSC---CCC-CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCE
T ss_pred cccCCEEECCCCCCCcchhhhhcCcCCEEECCCCc---Ccc-cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEE
Confidence 47788888777643 2223333 588888886551 111 11222388899999998 4544 6788899999
Q ss_pred EEEcCCch-hhhHH
Q 019478 311 RVVNNFLC-FCLIL 323 (340)
Q Consensus 311 ~l~~~~~~-~c~~l 323 (340)
++.++... .|+..
T Consensus 503 ~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 503 WLHDNPWDCTCPGI 516 (562)
T ss_dssp ECCSCCBCCCHHHH
T ss_pred EecCCCcCCCcchH
Confidence 99997554 47653
No 107
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.34 E-value=2.2e-05 Score=67.93 Aligned_cols=146 Identities=16% Similarity=0.127 Sum_probs=88.8
Q ss_pred CCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceEEE---E-EC
Q 019478 167 TLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEEVE---I-SA 240 (340)
Q Consensus 167 ~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~l~---i-~~ 240 (340)
.+.++++|++|+|.++.+..-. ...+..+++|++|++.++. +..+... ..+++|+.|.+.++. +..+. + ..
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 123 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHL 123 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTC
T ss_pred HhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCCC-ccccCchhcccC
Confidence 5678899999999887654211 1124678899999998885 3322111 234788999888775 33321 2 24
Q ss_pred CceeEEEEeccce-----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcc----eEEEE------cccCCcCCC
Q 019478 241 PSVRSFKYYGPEI-----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLE----TLELG------FVLNAVSIL 305 (340)
Q Consensus 241 p~L~~l~l~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~----~L~l~------~~~~~~~f~ 305 (340)
++|+.|.++++.. +-.++.+++|+.+++....-.. .....+..+++++ .|++. ++.......
T Consensus 124 ~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~ 200 (276)
T 2z62_A 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS---IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200 (276)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE---ECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSC
T ss_pred CCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc---CCHHHhhhhhhccccceeeecCCCcccccCccccCCC
Confidence 8899999887743 2246678889988887652111 1112223344444 56665 333344445
Q ss_pred cceEEEEEcCCch
Q 019478 306 NLKCFRVVNNFLC 318 (340)
Q Consensus 306 ~L~~L~l~~~~~~ 318 (340)
+|++|++.++.+.
T Consensus 201 ~L~~L~L~~n~l~ 213 (276)
T 2z62_A 201 RLKELALDTNQLK 213 (276)
T ss_dssp CEEEEECCSSCCS
T ss_pred cccEEECCCCcee
Confidence 8999999985444
No 108
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.29 E-value=0.00017 Score=57.16 Aligned_cols=116 Identities=13% Similarity=0.126 Sum_probs=60.2
Q ss_pred CccceEEeeeecCCc-ceEE-EeccCCCcceEEEEecCCceEEE--EECCceeEEEEecccee----eecCCCcccceEE
Q 019478 196 CPLLARLRVVFSLDL-LSLK-VVGSSVKLKYLDICYCYFMEEVE--ISAPSVRSFKYYGPEIK----LRMENVPQLLDIS 267 (340)
Q Consensus 196 cp~Le~L~L~~c~~~-~~l~-i~~~~~~L~~L~l~~c~~l~~l~--i~~p~L~~l~l~~~~~~----~~~~~~~~L~~l~ 267 (340)
.+.|++|++.+|.-. ..+. .-..+++|+.|.+.+|. ++.+. -..++|+.|+++++... ..+..+++|+.++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 578999999998622 1211 11344788888888886 54431 11366666666655321 1123356666666
Q ss_pred EeeccCchhhhhhhhhhccCCCcceEEEE------ccc----CCcCCCcceEEEEEc
Q 019478 268 IGGGYGVRMKHAISPIMSYFHQLETLELG------FVL----NAVSILNLKCFRVVN 314 (340)
Q Consensus 268 l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~----~~~~f~~L~~L~l~~ 314 (340)
+..+.-..+. ....+..+++|+.|++. .+. .+..+++|++|++..
T Consensus 102 Ls~N~l~~~~--~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 102 LSGNKLKDIS--TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp CBSSSCCSSG--GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred ccCCccCcch--hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 5544111000 01234455666666665 122 334555666665554
No 109
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.26 E-value=2.3e-05 Score=66.78 Aligned_cols=124 Identities=14% Similarity=0.125 Sum_probs=73.2
Q ss_pred CCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceEEEE----EC
Q 019478 167 TLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEEVEI----SA 240 (340)
Q Consensus 167 ~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~l~i----~~ 240 (340)
.+.++++|++|+|.+..+..- ....+..+++|+.|++.++. ++.+... ...++|+.|.++++. ++.+.- ..
T Consensus 54 ~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l 130 (251)
T 3m19_A 54 TFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRL 130 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred HhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccC
Confidence 456778888888877665431 11224567788888887764 2221100 233677888887765 444332 14
Q ss_pred CceeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE
Q 019478 241 PSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG 296 (340)
Q Consensus 241 p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~ 296 (340)
++|+.|+++++... ..++.+++|+.+.+.... +.......+..+++|+.|++.
T Consensus 131 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ---LQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CSCCCTTTTTTCTTCCEEECC
T ss_pred CcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc---CCccCHHHHhCCCCCCEEEee
Confidence 77888888776432 125567788888776541 111222345677888888886
No 110
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.24 E-value=0.00015 Score=67.50 Aligned_cols=99 Identities=16% Similarity=0.053 Sum_probs=45.2
Q ss_pred CCcceEEEEecCCceEEEEECCceeEEEEeccceeeecCCCcccceEEEeeccCchh-------------hhhhhhhhcc
Q 019478 220 VKLKYLDICYCYFMEEVEISAPSVRSFKYYGPEIKLRMENVPQLLDISIGGGYGVRM-------------KHAISPIMSY 286 (340)
Q Consensus 220 ~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~-------------~~~~~~ll~~ 286 (340)
++|+.|.++++. ++.+.-..++|+.|+++++.........++|+.+++....-..+ ...+..+...
T Consensus 257 ~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~ 335 (454)
T 1jl5_A 257 PSLEALNVRDNY-LTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL 335 (454)
T ss_dssp TTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC
T ss_pred cccCEEECCCCc-ccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccccc
Confidence 456666665554 33333334677777777664322112224555554433200000 0012223334
Q ss_pred CCCcceEEEE---cccCCcCCCcceEEEEEcCCchh
Q 019478 287 FHQLETLELG---FVLNAVSILNLKCFRVVNNFLCF 319 (340)
Q Consensus 287 ~~~L~~L~l~---~~~~~~~f~~L~~L~l~~~~~~~ 319 (340)
+++|+.|++. +......+++|++|++.++.+..
T Consensus 336 ~~~L~~L~L~~N~l~~lp~~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 336 PPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS
T ss_pred CCcCCEEECCCCccccccchhhhccEEECCCCCCCc
Confidence 5666666665 11111145677777777654443
No 111
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.24 E-value=0.00039 Score=61.10 Aligned_cols=148 Identities=13% Similarity=0.097 Sum_probs=97.4
Q ss_pred CCCCceEEeeeEEecHHHHHHHHhc--CccceEEeeeecCCcceE--EEe-ccCCCcceEEEEecCCceE-------EE-
Q 019478 171 IKSLRSLCLDAVNVSGEVLEFFIYS--CPLLARLRVVFSLDLLSL--KVV-GSSVKLKYLDICYCYFMEE-------VE- 237 (340)
Q Consensus 171 ~~~L~~L~L~~~~i~~~~l~~lls~--cp~Le~L~L~~c~~~~~l--~i~-~~~~~L~~L~l~~c~~l~~-------l~- 237 (340)
...++.|.+..+.+++..+..+... ++.|++|++.+|.-.... .+. ...++|+.|.++++. +.. +.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~ 141 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQ 141 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHh
Confidence 3457888998888888777665543 677999999999632211 111 345899999999987 332 10
Q ss_pred EECCceeEEEEecccee----eecCCCcccceEEEeeccCch-hhhhhhhhhccCCCcceEEEE---c---cc----CCc
Q 019478 238 ISAPSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVR-MKHAISPIMSYFHQLETLELG---F---VL----NAV 302 (340)
Q Consensus 238 i~~p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~-~~~~~~~ll~~~~~L~~L~l~---~---~~----~~~ 302 (340)
...++|++|.++++... -.++.+++|+.+++....-.. ........+..+++|+.|.+. + +. .+.
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 13689999999987532 235678899999887652111 011112334678899999998 1 22 234
Q ss_pred CCCcceEEEEEcCCchh
Q 019478 303 SILNLKCFRVVNNFLCF 319 (340)
Q Consensus 303 ~f~~L~~L~l~~~~~~~ 319 (340)
.+++|++|++.++.+..
T Consensus 222 ~l~~L~~L~Ls~N~l~~ 238 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRA 238 (310)
T ss_dssp HTCCCSSEECTTSCCCC
T ss_pred cCCCCCEEECCCCCCCc
Confidence 66899999998855443
No 112
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.22 E-value=6e-06 Score=74.94 Aligned_cols=123 Identities=13% Similarity=0.123 Sum_probs=58.1
Q ss_pred CCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceE---E----EeccCCCcceEEEEecCCceEEE-------
Q 019478 172 KSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSL---K----VVGSSVKLKYLDICYCYFMEEVE------- 237 (340)
Q Consensus 172 ~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l---~----i~~~~~~L~~L~l~~c~~l~~l~------- 237 (340)
++|++|+|.++.+++.++..+...+++|++|+|.+|. ++.. . +....++|+.|++++|. +++..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 178 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEG 178 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHH
Confidence 5666666666666666665555555666666666663 2110 0 00122556666666664 32210
Q ss_pred -EECCceeEEEEecccee--------eecCCCcccceEEEeecc-CchhhhhhhhhhccCCCcceEEEE
Q 019478 238 -ISAPSVRSFKYYGPEIK--------LRMENVPQLLDISIGGGY-GVRMKHAISPIMSYFHQLETLELG 296 (340)
Q Consensus 238 -i~~p~L~~l~l~~~~~~--------~~~~~~~~L~~l~l~~~~-~~~~~~~~~~ll~~~~~L~~L~l~ 296 (340)
-..++|++|+++++... -.+...++|+++++..+. .+.-...+...+...++|+.|+|.
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls 247 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLY 247 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECT
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEecc
Confidence 12355666666555321 012334456655555441 111011233334455556666655
No 113
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.18 E-value=8e-05 Score=72.90 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=23.4
Q ss_pred hhccCCCcceEEEE------c-ccCCcCCCcceEEEEEcCCch
Q 019478 283 IMSYFHQLETLELG------F-VLNAVSILNLKCFRVVNNFLC 318 (340)
Q Consensus 283 ll~~~~~L~~L~l~------~-~~~~~~f~~L~~L~l~~~~~~ 318 (340)
.+.++++|+.|++. + +..+..+++|++|++.++.+.
T Consensus 475 ~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 517 (680)
T 1ziw_A 475 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred ccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcc
Confidence 35567777777776 2 234566777888888775443
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.17 E-value=3.6e-05 Score=69.39 Aligned_cols=146 Identities=10% Similarity=0.014 Sum_probs=98.1
Q ss_pred CCCceEEeeeEEecHHH---HHHHHhc-CccceEEeeeecCCcceEE---E----eccCCCcceEEEEecCCceEEEE--
Q 019478 172 KSLRSLCLDAVNVSGEV---LEFFIYS-CPLLARLRVVFSLDLLSLK---V----VGSSVKLKYLDICYCYFMEEVEI-- 238 (340)
Q Consensus 172 ~~L~~L~L~~~~i~~~~---l~~lls~-cp~Le~L~L~~c~~~~~l~---i----~~~~~~L~~L~l~~c~~l~~l~i-- 238 (340)
++|++|+|.++.+++.+ +...+.. ++.|++|++.+|. ++... + .....+|++|.+++|. +++...
T Consensus 109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~ 186 (362)
T 3goz_A 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAE 186 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHH
T ss_pred CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHH
Confidence 89999999999887654 4444555 6799999999985 32111 1 1111499999999986 443221
Q ss_pred ------EC-CceeEEEEeccceee--------ecCC-CcccceEEEeecc-CchhhhhhhhhhccCCCcceEEEE-----
Q 019478 239 ------SA-PSVRSFKYYGPEIKL--------RMEN-VPQLLDISIGGGY-GVRMKHAISPIMSYFHQLETLELG----- 296 (340)
Q Consensus 239 ------~~-p~L~~l~l~~~~~~~--------~~~~-~~~L~~l~l~~~~-~~~~~~~~~~ll~~~~~L~~L~l~----- 296 (340)
.. ++|+.|+++++...- .+.. .++|+++++..+. .......+..++..+++|+.|++.
T Consensus 187 l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 187 LAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred HHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcc
Confidence 12 599999999874321 1222 4689999998762 111123455677899999999998
Q ss_pred ---------cccCCcCCCcceEEEEEcCCchh
Q 019478 297 ---------FVLNAVSILNLKCFRVVNNFLCF 319 (340)
Q Consensus 297 ---------~~~~~~~f~~L~~L~l~~~~~~~ 319 (340)
++..++.+++|+.|++.++.+..
T Consensus 267 ~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 267 NMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp TCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred ccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 23456677788888887765543
No 115
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.15 E-value=5e-05 Score=73.33 Aligned_cols=119 Identities=14% Similarity=0.166 Sum_probs=68.7
Q ss_pred CCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceEEEEE----CCceeEE
Q 019478 173 SLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEEVEIS----APSVRSF 246 (340)
Q Consensus 173 ~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~l~i~----~p~L~~l 246 (340)
++++|+|++..++.=. ..-+.++++|+.|+|.+|. ++.+.-. ..+++|++|.++++. ++.+... .++|++|
T Consensus 53 ~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEE
T ss_pred CCCEEEeeCCCCCCCC-HHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEE
Confidence 6788888765543100 0114567788888887774 3322111 133677777777765 5555432 3677777
Q ss_pred EEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE
Q 019478 247 KYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG 296 (340)
Q Consensus 247 ~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~ 296 (340)
++.++.. ...++++++|+++++....-. ......++..+++|+.|++.
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~--~~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQ--SFKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC--CCCCCGGGGGCTTCCEEECC
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccc--cCCCchhhccchhhhhhccc
Confidence 7776632 223667788888887654111 01123455677888888876
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.14 E-value=1.3e-05 Score=62.38 Aligned_cols=112 Identities=11% Similarity=0.042 Sum_probs=62.2
Q ss_pred CCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceE-EEeccCCCcceEEEEecCCceEEEEECCce
Q 019478 165 PRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSL-KVVGSSVKLKYLDICYCYFMEEVEISAPSV 243 (340)
Q Consensus 165 ~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~l~i~~p~L 243 (340)
|..+..+++|+.|++.++.+.+- ..+..+++|+.|++.++.-...+ .....+++|+.|.++++. ++++.
T Consensus 35 ~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~------ 104 (149)
T 2je0_A 35 EGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLS------ 104 (149)
T ss_dssp CSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-CCSHH------
T ss_pred HHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-CCChH------
Confidence 34457889999999988876543 34567889999999888532211 011123566666666654 22210
Q ss_pred eEEEEeccceeeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEE
Q 019478 244 RSFKYYGPEIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLEL 295 (340)
Q Consensus 244 ~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l 295 (340)
....++.+++|+.+++..+.-..........+..+++|+.|++
T Consensus 105 ---------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 105 ---------TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ---------HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ---------HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 0122455667777666544111111111234567777777654
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.12 E-value=7.8e-05 Score=64.11 Aligned_cols=135 Identities=13% Similarity=0.160 Sum_probs=63.1
Q ss_pred CCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEE-EECCceeEEEE
Q 019478 170 NIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVE-ISAPSVRSFKY 248 (340)
Q Consensus 170 ~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~-i~~p~L~~l~l 248 (340)
.+++|+.|++.++.+.+- . -+..+++|++|++.++. ++.+.--..+++|+.|.++++. ++++. +..++|+.|.+
T Consensus 39 ~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~L~~N~-l~~l~~~~~~~L~~L~L 113 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSL--A-GMQFFTNLKELHLSHNQ-ISDLSPLKDLTKLEELSVNRNR-LKNLNGIPSACLSRLFL 113 (263)
T ss_dssp HHTTCSEEECTTSCCCCC--T-TGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSSC-CSCCTTCCCSSCCEEEC
T ss_pred hcCcCcEEECcCCCcccc--h-HHhhCCCCCEEECCCCc-cCCChhhccCCCCCEEECCCCc-cCCcCccccCcccEEEc
Confidence 455666666655544321 1 13456666666666653 2111001233566666666554 22210 11156666666
Q ss_pred ecccee--eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-----cccCCcCCCcceEEEEEc
Q 019478 249 YGPEIK--LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-----FVLNAVSILNLKCFRVVN 314 (340)
Q Consensus 249 ~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-----~~~~~~~f~~L~~L~l~~ 314 (340)
+++... -.++.+++|+.+++....-..+ ..+..+++|+.|++. ....+..+++|+.|++.+
T Consensus 114 ~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~-----~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 114 DNNELRDTDSLIHLKNLEILSIRNNKLKSI-----VMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTG 181 (263)
T ss_dssp CSSCCSBSGGGTTCTTCCEEECTTSCCCBC-----GGGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEE
T ss_pred cCCccCCChhhcCcccccEEECCCCcCCCC-----hHHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCC
Confidence 655321 1244556666665543311110 124455666666665 113344555666666655
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.02 E-value=6.4e-05 Score=61.99 Aligned_cols=82 Identities=16% Similarity=0.164 Sum_probs=50.4
Q ss_pred CCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE--eccCCCcceEEEEecCCceEEEE----EC
Q 019478 167 TLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV--VGSSVKLKYLDICYCYFMEEVEI----SA 240 (340)
Q Consensus 167 ~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~l~i----~~ 240 (340)
.+.++++|++|+|.+..+..- ....+..+++|++|++.++. ++.+.- -...++|+.|.++++. ++.+.- ..
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l 123 (208)
T 2o6s_A 47 VFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKL 123 (208)
T ss_dssp TTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred hhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccC
Confidence 357889999999988776521 12234678999999999885 332111 0234678888887765 433221 12
Q ss_pred CceeEEEEecc
Q 019478 241 PSVRSFKYYGP 251 (340)
Q Consensus 241 p~L~~l~l~~~ 251 (340)
++|+.|+++++
T Consensus 124 ~~L~~L~l~~N 134 (208)
T 2o6s_A 124 TQLKDLRLYQN 134 (208)
T ss_dssp TTCCEEECCSS
T ss_pred CcCCEEECCCC
Confidence 55666655554
No 119
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=96.98 E-value=0.00037 Score=58.07 Aligned_cols=125 Identities=12% Similarity=0.057 Sum_probs=71.5
Q ss_pred CCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceEEEEECCceeEEEEe
Q 019478 172 KSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEEVEISAPSVRSFKYY 249 (340)
Q Consensus 172 ~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~ 249 (340)
++|+.|+|.+..+..-. ...+..+++|+.|+|.++. +..+.-. ...++|+.|.++++. ++.+.
T Consensus 32 ~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~------------ 96 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNK-ITELP------------ 96 (220)
T ss_dssp TTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSC-CCCCC------------
T ss_pred cCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCc-CCccC------------
Confidence 68888888876553210 1124567888888888774 2221000 122455555555443 22111
Q ss_pred ccceeeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------c-ccCCcCCCcceEEEEEcCCch
Q 019478 250 GPEIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------F-VLNAVSILNLKCFRVVNNFLC 318 (340)
Q Consensus 250 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~-~~~~~~f~~L~~L~l~~~~~~ 318 (340)
...+.++++|+.+.+.... +.......+.++++|+.|+|. + +..+..+++|++|++.++...
T Consensus 97 ----~~~f~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 97 ----KSLFEGLFSLQLLLLNANK---INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp ----TTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ----HhHccCCCCCCEEECCCCC---CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 1124567777777776541 111222345678888888887 2 234667889999999886543
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.97 E-value=0.00029 Score=67.46 Aligned_cols=132 Identities=14% Similarity=0.058 Sum_probs=89.6
Q ss_pred CCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEEECCceeEEEEec
Q 019478 171 IKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKYYG 250 (340)
Q Consensus 171 ~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~~ 250 (340)
+++|++|+|.++.++. +. ..+++|+.|++.++. ++. ++....+|+.|.++++. ++.+.-..++|+.|++++
T Consensus 79 ~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~-l~~--ip~l~~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 79 PPQITVLEITQNALIS--LP---ELPASLEYLDACDNR-LST--LPELPASLKHLDVDNNQ-LTMLPELPALLEYINADN 149 (571)
T ss_dssp CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSC-CSC--CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCS
T ss_pred cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCC-CCC--cchhhcCCCEEECCCCc-CCCCCCcCccccEEeCCC
Confidence 5889999999887762 33 568999999999984 333 22222499999999886 554433578999999998
Q ss_pred cceeeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcc-------eEEEEEcCCc
Q 019478 251 PEIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNL-------KCFRVVNNFL 317 (340)
Q Consensus 251 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L-------~~L~l~~~~~ 317 (340)
+........+++|+.+++..+.-.. +.. +. ++|+.|+|. +|. ++ .+| +.|++.+|.+
T Consensus 150 N~l~~lp~~l~~L~~L~Ls~N~L~~----lp~-l~--~~L~~L~Ls~N~L~~lp~-~~--~~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 150 NQLTMLPELPTSLEVLSVRNNQLTF----LPE-LP--ESLEALDVSTNLLESLPA-VP--VRNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp SCCSCCCCCCTTCCEEECCSSCCSC----CCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCC
T ss_pred CccCcCCCcCCCcCEEECCCCCCCC----cch-hh--CCCCEEECcCCCCCchhh-HH--HhhhcccccceEEecCCCcc
Confidence 8653333367889999887652111 112 22 899999998 333 22 278 9999998766
Q ss_pred hhhh
Q 019478 318 CFCL 321 (340)
Q Consensus 318 ~~c~ 321 (340)
...|
T Consensus 220 ~~lp 223 (571)
T 3cvr_A 220 THIP 223 (571)
T ss_dssp CCCC
T ss_pred eecC
Confidence 6444
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.96 E-value=9.7e-06 Score=66.58 Aligned_cols=100 Identities=20% Similarity=0.265 Sum_probs=56.8
Q ss_pred CCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceE-EEeccCCCcceEEEEecCCceEEE-E-ECCce
Q 019478 167 TLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSL-KVVGSSVKLKYLDICYCYFMEEVE-I-SAPSV 243 (340)
Q Consensus 167 ~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~l~-i-~~p~L 243 (340)
.+..+++|++|+|.++.+.+ +. .+..+++|+.|++.++. ++.+ .....+++|+.|.++++. ++.+. + ..++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLSGIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHHHHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCCccccCCCC
Confidence 34577888999988887755 22 35667888888888874 2211 001122577777777764 33321 0 13556
Q ss_pred eEEEEecccee-----eecCCCcccceEEEeec
Q 019478 244 RSFKYYGPEIK-----LRMENVPQLLDISIGGG 271 (340)
Q Consensus 244 ~~l~l~~~~~~-----~~~~~~~~L~~l~l~~~ 271 (340)
+.|+++++... -.+..+++|+.+.+...
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 66666555321 12445556666655443
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=96.93 E-value=0.00047 Score=57.42 Aligned_cols=130 Identities=9% Similarity=0.033 Sum_probs=72.7
Q ss_pred CCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceEEEEECCceeEEEE
Q 019478 171 IKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEEVEISAPSVRSFKY 248 (340)
Q Consensus 171 ~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l 248 (340)
.+.++.|+|.+..+..-.-...+..+++|+.|++.++. ++.+.-. ...++|+.|.++++. ++.+
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~------------ 96 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNR-LENV------------ 96 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCCC------------
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCc-cCcc------------
Confidence 34677888877655321111224567788888887764 3221100 122445555554443 2211
Q ss_pred eccceeeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcceEEEEEcCCch-hh
Q 019478 249 YGPEIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLKCFRVVNNFLC-FC 320 (340)
Q Consensus 249 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~~L~l~~~~~~-~c 320 (340)
..-.++.+++|+.+.+.... +.......+.++++|+.|+|. .+..+..+++|+.|++.++... .|
T Consensus 97 ----~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 97 ----QHKMFKGLESLKTLMLRSNR---ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp ----CGGGGTTCSSCCEEECTTSC---CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred ----CHhHhcCCcCCCEEECCCCc---CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 11125567777777775441 111222345578888888887 2566778889999999986544 45
Q ss_pred h
Q 019478 321 L 321 (340)
Q Consensus 321 ~ 321 (340)
+
T Consensus 170 ~ 170 (220)
T 2v70_A 170 Y 170 (220)
T ss_dssp G
T ss_pred c
Confidence 4
No 123
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.84 E-value=5.2e-05 Score=68.71 Aligned_cols=36 Identities=17% Similarity=0.062 Sum_probs=16.0
Q ss_pred CCCceEEeeeEEecHHHHHHHH----hcCccceEEeeeec
Q 019478 172 KSLRSLCLDAVNVSGEVLEFFI----YSCPLLARLRVVFS 207 (340)
Q Consensus 172 ~~L~~L~L~~~~i~~~~l~~ll----s~cp~Le~L~L~~c 207 (340)
++|+.|+|.++.+++.+...+. ..++.|++|+|.+|
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n 165 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN 165 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC
Confidence 4455555555444444332221 12444555555554
No 124
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=96.78 E-value=6.7e-05 Score=66.69 Aligned_cols=151 Identities=15% Similarity=0.088 Sum_probs=88.9
Q ss_pred CCCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEE----EC
Q 019478 165 PRTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEI----SA 240 (340)
Q Consensus 165 ~~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i----~~ 240 (340)
+..+.++++|++|+|.++.+..-. ...+..+++|++|++.++. ++.+..... ++|++|.+.++. ++.+.. ..
T Consensus 71 ~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~l~~~~~-~~L~~L~l~~n~-i~~~~~~~~~~l 146 (332)
T 2ft3_A 71 KDDFKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYISKNH-LVEIPPNLP-SSLVELRIHDNR-IRKVPKGVFSGL 146 (332)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEEC-GGGSTTCTTCCEEECCSSC-CCSCCSSCC-TTCCEEECCSSC-CCCCCSGGGSSC
T ss_pred HhHhhCCCCCcEEECCCCccCccC-HhHhhCcCCCCEEECCCCc-CCccCcccc-ccCCEEECCCCc-cCccCHhHhCCC
Confidence 345788999999999877654211 1225678999999999875 222111111 689999998876 444332 24
Q ss_pred CceeEEEEecccee------eecCCCcccceEEEeecc------------------CchhhhhhhhhhccCCCcceEEEE
Q 019478 241 PSVRSFKYYGPEIK------LRMENVPQLLDISIGGGY------------------GVRMKHAISPIMSYFHQLETLELG 296 (340)
Q Consensus 241 p~L~~l~l~~~~~~------~~~~~~~~L~~l~l~~~~------------------~~~~~~~~~~ll~~~~~L~~L~l~ 296 (340)
++|+.|++.++... ..+..+ +|+.+.+.... ...+.......+..+++|+.|++.
T Consensus 147 ~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~ 225 (332)
T 2ft3_A 147 RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG 225 (332)
T ss_dssp SSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCC
T ss_pred ccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 78888888776431 112222 34444333220 001111122345677888888887
Q ss_pred -------cccCCcCCCcceEEEEEcCCchhh
Q 019478 297 -------FVLNAVSILNLKCFRVVNNFLCFC 320 (340)
Q Consensus 297 -------~~~~~~~f~~L~~L~l~~~~~~~c 320 (340)
.+..+..+++|++|++.++.+...
T Consensus 226 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 256 (332)
T 2ft3_A 226 HNQIRMIENGSLSFLPTLRELHLDNNKLSRV 256 (332)
T ss_dssp SSCCCCCCTTGGGGCTTCCEEECCSSCCCBC
T ss_pred CCcCCcCChhHhhCCCCCCEEECCCCcCeec
Confidence 223466788899999988655433
No 125
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=96.73 E-value=0.0036 Score=59.67 Aligned_cols=147 Identities=11% Similarity=0.038 Sum_probs=87.9
Q ss_pred CCCCCCceEEeeeEEecHHHHHHHHhc--CccceEEeeeecCCcce---------------EEEec--------------
Q 019478 169 SNIKSLRSLCLDAVNVSGEVLEFFIYS--CPLLARLRVVFSLDLLS---------------LKVVG-------------- 217 (340)
Q Consensus 169 ~~~~~L~~L~L~~~~i~~~~l~~lls~--cp~Le~L~L~~c~~~~~---------------l~i~~-------------- 217 (340)
.++++|+.|.|.++.+.+..+..+... .+.|++|++.+|.-.+. +.+..
T Consensus 246 ~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~ 325 (562)
T 3a79_B 246 TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY 325 (562)
T ss_dssp HSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHH
T ss_pred hccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhh
Confidence 356777788888888887765554432 56899999998841110 10000
Q ss_pred ---cCCCcceEEEEecCCceEEE--EECCceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCC
Q 019478 218 ---SSVKLKYLDICYCYFMEEVE--ISAPSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFH 288 (340)
Q Consensus 218 ---~~~~L~~L~l~~c~~l~~l~--i~~p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~ 288 (340)
...+|+.|.+.++. +..+. -..++|+.|+++++.. +..++.+++|+.+.+....-..+. .+...+.+++
T Consensus 326 ~~~~~~~L~~L~l~~n~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~~~l~ 403 (562)
T 3a79_B 326 SVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF-KVALMTKNMS 403 (562)
T ss_dssp HHHHTCCCSEEEEESSC-CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT-HHHHTTTTCT
T ss_pred hhhccCcceEEEccCCC-cccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc-cchhhhcCCC
Confidence 00235566665554 22222 2347888888887643 223566788888888654211111 2234466888
Q ss_pred CcceEEEE-------ccc-CCcCCCcceEEEEEcCCc
Q 019478 289 QLETLELG-------FVL-NAVSILNLKCFRVVNNFL 317 (340)
Q Consensus 289 ~L~~L~l~-------~~~-~~~~f~~L~~L~l~~~~~ 317 (340)
+|+.|++. ++. .+..+++|++|++.++.+
T Consensus 404 ~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l 440 (562)
T 3a79_B 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440 (562)
T ss_dssp TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence 99999987 222 255678899999888655
No 126
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.72 E-value=0.00087 Score=60.34 Aligned_cols=142 Identities=17% Similarity=0.088 Sum_probs=84.3
Q ss_pred hcCccceEEeeeecCC----cceE------EEeccCCCcceEEEEecCCceEEEEECCceeEEEEecccee------eec
Q 019478 194 YSCPLLARLRVVFSLD----LLSL------KVVGSSVKLKYLDICYCYFMEEVEISAPSVRSFKYYGPEIK------LRM 257 (340)
Q Consensus 194 s~cp~Le~L~L~~c~~----~~~l------~i~~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~~~~~~------~~~ 257 (340)
...|+|+.|.+..... ++.+ .+...+++|++|.+.++..+.--.+..|+|+.|.+..+... +..
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~ 215 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILG 215 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHH
Confidence 4578999999865321 1111 11124489999999987432211134799999999866432 122
Q ss_pred CCCcccceEEEeec---cC-chhhhhhhhhhc--cCCCcceEEEE---c----c---cCCcCCCcceEEEEEcCCchhhh
Q 019478 258 ENVPQLLDISIGGG---YG-VRMKHAISPIMS--YFHQLETLELG---F----V---LNAVSILNLKCFRVVNNFLCFCL 321 (340)
Q Consensus 258 ~~~~~L~~l~l~~~---~~-~~~~~~~~~ll~--~~~~L~~L~l~---~----~---~~~~~f~~L~~L~l~~~~~~~c~ 321 (340)
..+|+|+++.|... +. ......+..++. .+|+|+.|.+. + . ...+.+++|++|++.++.+..--
T Consensus 216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G 295 (362)
T 2ra8_A 216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG 295 (362)
T ss_dssp SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH
T ss_pred ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH
Confidence 46899999999653 11 110112233443 58999999997 1 1 12357899999999886655421
Q ss_pred -HHHHHHHHhccccc
Q 019478 322 -ILLLFLRKICNSHN 335 (340)
Q Consensus 322 -~l~~~~l~~cp~~~ 335 (340)
.-....++.+|+++
T Consensus 296 ~~~L~~~L~~l~~L~ 310 (362)
T 2ra8_A 296 ARLLLDHVDKIKHLK 310 (362)
T ss_dssp HHHHHTTHHHHTTCS
T ss_pred HHHHHhhcccCCcce
Confidence 11111245566543
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.60 E-value=0.00019 Score=64.68 Aligned_cols=145 Identities=17% Similarity=0.128 Sum_probs=78.9
Q ss_pred CCCceEEeeeEEecHHHHHHHHh-cCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceEEEE----ECCcee
Q 019478 172 KSLRSLCLDAVNVSGEVLEFFIY-SCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEEVEI----SAPSVR 244 (340)
Q Consensus 172 ~~L~~L~L~~~~i~~~~l~~lls-~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~l~i----~~p~L~ 244 (340)
+.++.|+|.+..++.-.- ..+. .+++|+.|+|.++. +..+.-. ..+++|+.|.++++. ++.+.- ..++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~-~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRA-EWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALE 115 (361)
T ss_dssp TTCSEEECCSSCCCEECT-TSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCCCCccCh-hhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCC
Confidence 456677776655432110 1122 56777777777663 2221100 133667777777665 554432 137777
Q ss_pred EEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhh---ccCCCcceEEEE---c---c-cCCcCCCc--ce
Q 019478 245 SFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIM---SYFHQLETLELG---F---V-LNAVSILN--LK 308 (340)
Q Consensus 245 ~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll---~~~~~L~~L~l~---~---~-~~~~~f~~--L~ 308 (340)
.|.++++... ..+.++++|+.+++....-.. .-..++ ..+++|+.|+|. + + ..+..+++ |+
T Consensus 116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~---l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~ 192 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR---FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS---CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHT
T ss_pred EEECCCCcccEECHHHhCCcccCCEEECCCCcCCe---eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcc
Confidence 7777766432 236678888888886551111 111222 568899999987 1 1 22334554 47
Q ss_pred EEEEEcCCch-hhhH
Q 019478 309 CFRVVNNFLC-FCLI 322 (340)
Q Consensus 309 ~L~l~~~~~~-~c~~ 322 (340)
.|.+.+|... .|..
T Consensus 193 ~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 193 GLYLHNNPLECDCKL 207 (361)
T ss_dssp TEECCSSCEECCHHH
T ss_pred eEEecCCCccCCcCc
Confidence 8888886554 4543
No 128
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.45 E-value=0.0012 Score=59.26 Aligned_cols=121 Identities=14% Similarity=0.087 Sum_probs=83.0
Q ss_pred CccceEEeeeecCCcceEEEe--c-cCCCcceEEEEecCCceEEEEE----CCceeEEEEeccceee----ecCCCcccc
Q 019478 196 CPLLARLRVVFSLDLLSLKVV--G-SSVKLKYLDICYCYFMEEVEIS----APSVRSFKYYGPEIKL----RMENVPQLL 264 (340)
Q Consensus 196 cp~Le~L~L~~c~~~~~l~i~--~-~~~~L~~L~l~~c~~l~~l~i~----~p~L~~l~l~~~~~~~----~~~~~~~L~ 264 (340)
.+.++.|+|.++. ++.+... . ..++|+.|.++++. ++.+.-. .++|+.|+++++.... .+.++++|+
T Consensus 38 ~~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 38 PSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115 (361)
T ss_dssp CTTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence 4568999999884 4432211 1 45899999999886 6665422 4899999999885422 356789999
Q ss_pred eEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccC-C---cCCCcceEEEEEcCCchhhh
Q 019478 265 DISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLN-A---VSILNLKCFRVVNNFLCFCL 321 (340)
Q Consensus 265 ~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~-~---~~f~~L~~L~l~~~~~~~c~ 321 (340)
.+.+.... +.......+.++++|+.|+|. ++.. + ..+++|++|++.++.+...|
T Consensus 116 ~L~L~~N~---i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 116 VLLLYNNH---IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp EEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred EEECCCCc---ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 99987552 111223456789999999998 3332 2 46889999999997666544
No 129
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=96.35 E-value=0.00044 Score=66.69 Aligned_cols=151 Identities=11% Similarity=0.113 Sum_probs=87.4
Q ss_pred CCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceE-EEeccCCCcceEEEEecCCceEEEE----ECCc
Q 019478 168 LSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSL-KVVGSSVKLKYLDICYCYFMEEVEI----SAPS 242 (340)
Q Consensus 168 ~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l-~i~~~~~~L~~L~l~~c~~l~~l~i----~~p~ 242 (340)
+..+++|+.+.+.........-......++.|+.+++.++.-.... ......++|+.|.++++.....+.- ..++
T Consensus 416 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~ 495 (635)
T 4g8a_A 416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 495 (635)
T ss_dssp CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccc
Confidence 3455566666654433221111112334555666666554311000 0011336888888887753333321 2488
Q ss_pred eeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCC-CcceEE
Q 019478 243 VRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSI-LNLKCF 310 (340)
Q Consensus 243 L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f-~~L~~L 310 (340)
|+.|+++++... ..++++++|+.++|... .+.......+.++++|+.|++. .+..+..+ .+|+.|
T Consensus 496 L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N---~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L 572 (635)
T 4g8a_A 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN---NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 572 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTS---CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEE
T ss_pred cCEEECCCCccCCcChHHHcCCCCCCEEECCCC---cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEE
Confidence 999999987432 23678899999988654 1111223446789999999998 34455555 589999
Q ss_pred EEEcCCc-hhhh
Q 019478 311 RVVNNFL-CFCL 321 (340)
Q Consensus 311 ~l~~~~~-~~c~ 321 (340)
++.+|.. +-|.
T Consensus 573 ~L~~Np~~C~C~ 584 (635)
T 4g8a_A 573 NLTQNDFACTCE 584 (635)
T ss_dssp ECTTCCBCCSGG
T ss_pred EeeCCCCcccCC
Confidence 9998644 4465
No 130
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.32 E-value=0.0057 Score=54.58 Aligned_cols=14 Identities=7% Similarity=0.052 Sum_probs=8.0
Q ss_pred hhccCCCcceEEEE
Q 019478 283 IMSYFHQLETLELG 296 (340)
Q Consensus 283 ll~~~~~L~~L~l~ 296 (340)
.+.++++|+.|+++
T Consensus 197 ~f~~l~~L~~LdLs 210 (350)
T 4ay9_X 197 VFHGASGPVILDIS 210 (350)
T ss_dssp TTTTEECCSEEECT
T ss_pred HhccCcccchhhcC
Confidence 34455666666665
No 131
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=96.29 E-value=0.0011 Score=55.59 Aligned_cols=128 Identities=16% Similarity=0.072 Sum_probs=76.7
Q ss_pred CCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceEEEEECCceeEEEE
Q 019478 171 IKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEEVEISAPSVRSFKY 248 (340)
Q Consensus 171 ~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l 248 (340)
.++|++|+|.+..+..-. ...+..+++|+.|+|.++. +..+... ..+++|+.|.++++. ++.+.
T Consensus 39 ~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~----------- 104 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQ-LTVLP----------- 104 (229)
T ss_dssp CTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCC-----------
T ss_pred CCCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCc-CCccC-----------
Confidence 489999999987765311 1225678899999999885 3321111 123566666666554 22211
Q ss_pred eccceeeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cc-cCCcCCCcceEEEEEcCCc-hhh
Q 019478 249 YGPEIKLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FV-LNAVSILNLKCFRVVNNFL-CFC 320 (340)
Q Consensus 249 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~-~~~~~f~~L~~L~l~~~~~-~~c 320 (340)
...+..+++|+.+.+....-. .+..-+..+++|+.|++. ++ ..+..+++|+.|.+.++.. +.|
T Consensus 105 -----~~~~~~l~~L~~L~Ls~N~l~----~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 105 -----SAVFDRLVHLKELFMCCNKLT----ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp -----TTTTTTCTTCCEEECCSSCCC----SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred -----hhHhCcchhhCeEeccCCccc----ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 112455677777777544111 112224678888888887 22 3466788999999988644 345
Q ss_pred h
Q 019478 321 L 321 (340)
Q Consensus 321 ~ 321 (340)
+
T Consensus 176 ~ 176 (229)
T 3e6j_A 176 R 176 (229)
T ss_dssp G
T ss_pred c
Confidence 4
No 132
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=96.24 E-value=0.00022 Score=59.50 Aligned_cols=102 Identities=14% Similarity=0.113 Sum_probs=64.3
Q ss_pred CCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE--eccCCCcceEEEEecCCceEEEE----EC
Q 019478 167 TLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV--VGSSVKLKYLDICYCYFMEEVEI----SA 240 (340)
Q Consensus 167 ~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~l~i----~~ 240 (340)
.+..+++|++|+|.+..+..-. ...+..+++|++|+|.++. ++.+.- -..+++|+.|.++++. +..+.- ..
T Consensus 52 ~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l 128 (220)
T 2v70_A 52 IFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGL 128 (220)
T ss_dssp CGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTC
T ss_pred hhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCC
Confidence 4678999999999987654211 1125678999999999985 222111 1234788888888776 443311 23
Q ss_pred CceeEEEEeccce----eeecCCCcccceEEEeec
Q 019478 241 PSVRSFKYYGPEI----KLRMENVPQLLDISIGGG 271 (340)
Q Consensus 241 p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~ 271 (340)
++|+.|+++++.. +-.+..+++|+.+.+...
T Consensus 129 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 129 SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp TTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred ccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 6777777776633 123455666777666554
No 133
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=96.14 E-value=0.0027 Score=52.73 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=50.6
Q ss_pred CceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcceE
Q 019478 241 PSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLKC 309 (340)
Q Consensus 241 p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~~ 309 (340)
++|+.|+++++.. +-.+.++++|+.+++.... +.......+.++++|+.|+|. .+..+..+++|++
T Consensus 56 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~---l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 132 (220)
T 2v9t_B 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK---ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc---CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE
Confidence 5566666655532 1236677888888886551 122233456789999999998 3456778899999
Q ss_pred EEEEcCCch
Q 019478 310 FRVVNNFLC 318 (340)
Q Consensus 310 L~l~~~~~~ 318 (340)
|++.++.+.
T Consensus 133 L~L~~N~l~ 141 (220)
T 2v9t_B 133 LSLYDNKLQ 141 (220)
T ss_dssp EECCSSCCS
T ss_pred EECCCCcCC
Confidence 999985544
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.11 E-value=7e-05 Score=61.32 Aligned_cols=83 Identities=18% Similarity=0.209 Sum_probs=58.3
Q ss_pred CCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEeccCCCcceEEEEecCCceEEEE-----ECC
Q 019478 167 TLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVGSSVKLKYLDICYCYFMEEVEI-----SAP 241 (340)
Q Consensus 167 ~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~~~~~L~~L~l~~c~~l~~l~i-----~~p 241 (340)
.+.++++|+.|++.++.+. .+......+++|++|++.++. ++.+.--..+++|+.|.++++. ++.+.. ..+
T Consensus 65 ~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~-l~~l~~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~ 140 (198)
T 1ds9_A 65 SLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQ-IASLSGIEKLVNLRVLYMSNNK-ITNWGEIDKLAALD 140 (198)
T ss_dssp CHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEE-CCCHHHHHHHHHSSEEEESEEE-CCCHHHHHHHTTTT
T ss_pred ccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCc-CCcCCccccCCCCCEEECCCCc-CCchhHHHHHhcCC
Confidence 4467899999999999886 344456667899999999984 3322111234789999998876 443221 358
Q ss_pred ceeEEEEeccce
Q 019478 242 SVRSFKYYGPEI 253 (340)
Q Consensus 242 ~L~~l~l~~~~~ 253 (340)
+|+.|.+.++..
T Consensus 141 ~L~~L~l~~N~l 152 (198)
T 1ds9_A 141 KLEDLLLAGNPL 152 (198)
T ss_dssp TCSEEEECSCHH
T ss_pred CCCEEEecCCcc
Confidence 999999998853
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.05 E-value=0.0025 Score=50.83 Aligned_cols=67 Identities=13% Similarity=0.153 Sum_probs=43.5
Q ss_pred cCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cc-cCCcCCCcceEEEEEcCC-chhhhHHHHH
Q 019478 257 MENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FV-LNAVSILNLKCFRVVNNF-LCFCLILLLF 326 (340)
Q Consensus 257 ~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~-~~~~~f~~L~~L~l~~~~-~~~c~~l~~~ 326 (340)
++.+++|+.+++.... +.......+..+++|+.|++. ++ ..+..+++|++|++.++. .+.|+.+..+
T Consensus 72 ~~~l~~L~~L~l~~N~---l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l 146 (177)
T 2o6r_A 72 FDKLTKLTILYLHENK---LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 146 (177)
T ss_dssp TTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHH
T ss_pred ccCCCccCEEECCCCC---ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccHHHH
Confidence 4567778887776541 111223345678899999987 33 334678899999999864 4457765544
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.00 E-value=0.00082 Score=64.35 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=13.9
Q ss_pred CceEEeeeEEecHHHHHHHHhcCccceEEeeeec
Q 019478 174 LRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFS 207 (340)
Q Consensus 174 L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c 207 (340)
|+.|+|.++.++. +.. +..+++|+.|+|.++
T Consensus 443 L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N 473 (567)
T 1dce_A 443 VRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHN 473 (567)
T ss_dssp CSEEECTTSCCSS--CCC-GGGGTTCCEEECCSS
T ss_pred ceEEEecCCCCCC--CcC-ccccccCcEeecCcc
Confidence 4555554444322 112 344455555555554
No 137
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=95.85 E-value=0.0023 Score=53.47 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=43.2
Q ss_pred cCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEcCCchh
Q 019478 257 MENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNNFLCF 319 (340)
Q Consensus 257 ~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~~~~ 319 (340)
+..+++|+.+.+.... +.......+..+++|+.|.+. +|..+..+++|++|++.++.+..
T Consensus 84 ~~~l~~L~~L~Ls~N~---l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 149 (229)
T 3e6j_A 84 FDSLTQLTVLDLGTNQ---LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS 149 (229)
T ss_dssp TTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCC
T ss_pred cccCCCcCEEECCCCc---CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCc
Confidence 4667888888886541 112223446689999999998 56667788999999999865443
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=95.84 E-value=0.011 Score=52.19 Aligned_cols=71 Identities=20% Similarity=0.202 Sum_probs=46.0
Q ss_pred CCceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcc-eEEEE-----c-ccCCcCCCcce
Q 019478 240 APSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLE-TLELG-----F-VLNAVSILNLK 308 (340)
Q Consensus 240 ~p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~-~L~l~-----~-~~~~~~f~~L~ 308 (340)
+++|+++++.++.. ...+.++.+|+++.+... +...-...+.+|++|+ .+.+. + +..+..+.+|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n----i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN----LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT----CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc----cceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCC
Confidence 67888888876422 234677888888877532 1222234466888888 88886 2 34566777888
Q ss_pred EEEEEc
Q 019478 309 CFRVVN 314 (340)
Q Consensus 309 ~L~l~~ 314 (340)
.|.+..
T Consensus 301 ~l~l~~ 306 (329)
T 3sb4_A 301 YVLATG 306 (329)
T ss_dssp EEEECS
T ss_pred EEEeCC
Confidence 888754
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=95.69 E-value=0.0029 Score=51.32 Aligned_cols=78 Identities=17% Similarity=0.265 Sum_probs=49.2
Q ss_pred CceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcceE
Q 019478 241 PSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLKC 309 (340)
Q Consensus 241 p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~~ 309 (340)
++|++|+++++.. +-.++++++|+.+++.... +.......+.++++|+.|++. .+..+..+++|++
T Consensus 54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 130 (192)
T 1w8a_A 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK---IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130 (192)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC---CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc---CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE
Confidence 4555555554432 1235667778887776541 111222345678889999887 3566778899999
Q ss_pred EEEEcCCch-hhh
Q 019478 310 FRVVNNFLC-FCL 321 (340)
Q Consensus 310 L~l~~~~~~-~c~ 321 (340)
|++.++... .|+
T Consensus 131 L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 131 LNLASNPFNCNCH 143 (192)
T ss_dssp EECTTCCBCCSGG
T ss_pred EEeCCCCccCcCc
Confidence 999986544 454
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=95.16 E-value=0.0075 Score=48.88 Aligned_cols=78 Identities=15% Similarity=0.133 Sum_probs=49.1
Q ss_pred CceeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------ccc-CCcCCCcceE
Q 019478 241 PSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVL-NAVSILNLKC 309 (340)
Q Consensus 241 p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~-~~~~f~~L~~ 309 (340)
++|+.|+++++... -.+.++++|+.+.+.... +.......+.++++|+.|+|. ++. .+..+++|++
T Consensus 54 ~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~---l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 130 (193)
T 2wfh_A 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR---LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH 130 (193)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC---CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc---cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccE
Confidence 55666665555321 225667888888776541 111223346688899999988 333 4667889999
Q ss_pred EEEEcCCch-hhh
Q 019478 310 FRVVNNFLC-FCL 321 (340)
Q Consensus 310 L~l~~~~~~-~c~ 321 (340)
|++.++... .|.
T Consensus 131 L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 131 LAIGANPLYCDCN 143 (193)
T ss_dssp EECCSSCEECSGG
T ss_pred EEeCCCCeecCCc
Confidence 999986554 353
No 141
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=95.15 E-value=0.016 Score=51.59 Aligned_cols=148 Identities=11% Similarity=0.058 Sum_probs=70.2
Q ss_pred CCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEe--ccCCCcceEEEEecCCceEEE----EEC
Q 019478 167 TLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV--GSSVKLKYLDICYCYFMEEVE----ISA 240 (340)
Q Consensus 167 ~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~--~~~~~L~~L~l~~c~~l~~l~----i~~ 240 (340)
.+.++++|++|+|.+..+.+.-=...+.+++.|+++.+.++..+..+.-. ..+++|+.|.+.++. +..+. ...
T Consensus 49 ~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~ 127 (350)
T 4ay9_X 49 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHS 127 (350)
T ss_dssp SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCB
T ss_pred HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccc-cccCCchhhccc
Confidence 35667777777776654211000011344566666555555544432111 133677777777665 33221 123
Q ss_pred CceeEEEEeccce--eee---cCCC-cccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cc-cCCcCCCc
Q 019478 241 PSVRSFKYYGPEI--KLR---MENV-PQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FV-LNAVSILN 306 (340)
Q Consensus 241 p~L~~l~l~~~~~--~~~---~~~~-~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~-~~~~~f~~ 306 (340)
.++..+.+.+... .+. +... ..++.+.+... .+...... .....+++.|.+. ++ ..+..+++
T Consensus 128 ~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N---~i~~i~~~-~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~ 203 (350)
T 4ay9_X 128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN---GIQEIHNS-AFNGTQLDELNLSDNNNLEELPNDVFHGASG 203 (350)
T ss_dssp SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS---CCCEECTT-SSTTEEEEEEECTTCTTCCCCCTTTTTTEEC
T ss_pred chhhhhhhccccccccccccchhhcchhhhhhccccc---cccCCChh-hccccchhHHhhccCCcccCCCHHHhccCcc
Confidence 4556666654321 111 1222 24555554432 11111111 1123456666664 33 34567788
Q ss_pred ceEEEEEcCCchh
Q 019478 307 LKCFRVVNNFLCF 319 (340)
Q Consensus 307 L~~L~l~~~~~~~ 319 (340)
|+.|++.++.+..
T Consensus 204 L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 204 PVILDISRTRIHS 216 (350)
T ss_dssp CSEEECTTSCCCC
T ss_pred cchhhcCCCCcCc
Confidence 9999998855443
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.14 E-value=0.018 Score=52.55 Aligned_cols=70 Identities=14% Similarity=0.234 Sum_probs=42.0
Q ss_pred CCceeEEEEeccce---------eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-----c-ccCCcCC
Q 019478 240 APSVRSFKYYGPEI---------KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-----F-VLNAVSI 304 (340)
Q Consensus 240 ~p~L~~l~l~~~~~---------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-----~-~~~~~~f 304 (340)
+++|+++.+.+... ...+.+|++|+.+.+.-. +...-...+.+|++|+.+.|. + ...+..+
T Consensus 270 c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~----i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~ 345 (401)
T 4fdw_A 270 CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES----IRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT 345 (401)
T ss_dssp CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT----CCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS
T ss_pred CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc----eEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC
Confidence 46777777665422 234566777777666421 111222345678888888886 2 2345566
Q ss_pred CcceEEEEEc
Q 019478 305 LNLKCFRVVN 314 (340)
Q Consensus 305 ~~L~~L~l~~ 314 (340)
+|+.+.+..
T Consensus 346 -~L~~l~l~~ 354 (401)
T 4fdw_A 346 -GIKEVKVEG 354 (401)
T ss_dssp -CCCEEEECC
T ss_pred -CCCEEEEcC
Confidence 888888876
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=94.98 E-value=0.0053 Score=60.57 Aligned_cols=102 Identities=15% Similarity=0.087 Sum_probs=55.6
Q ss_pred HhcCccceEEeeeecCCcceEEEec---cCCCcceEEEEecCCceEEEEECCceeEEEEeccceeeecCCCcccceEEEe
Q 019478 193 IYSCPLLARLRVVFSLDLLSLKVVG---SSVKLKYLDICYCYFMEEVEISAPSVRSFKYYGPEIKLRMENVPQLLDISIG 269 (340)
Q Consensus 193 ls~cp~Le~L~L~~c~~~~~l~i~~---~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~~~~~~~~~~~~~~L~~l~l~ 269 (340)
+..++.|+.|+|.++.- .. ++. .+++|+.|.++++. ++.+ +-.++.+++|+.+.|.
T Consensus 220 ~~~l~~L~~L~Ls~n~l-~~--l~~~~~~l~~L~~L~Ls~N~-l~~l-----------------p~~~~~l~~L~~L~Ls 278 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQI-FN--ISANIFKYDFLTRLYLNGNS-LTEL-----------------PAEIKNLSNLRVLDLS 278 (727)
T ss_dssp --CCCCCCEEECTTSCC-SC--CCGGGGGCCSCSCCBCTTSC-CSCC-----------------CGGGGGGTTCCEEECT
T ss_pred hccCCCCcEEECCCCCC-CC--CChhhcCCCCCCEEEeeCCc-Cccc-----------------ChhhhCCCCCCEEeCc
Confidence 45567777777776642 11 111 22445555555443 2211 1124455666666665
Q ss_pred eccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEEEEEcCCchh
Q 019478 270 GGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCFRVVNNFLCF 319 (340)
Q Consensus 270 ~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L~l~~~~~~~ 319 (340)
.+. +. .+..-+.++++|+.|.|. +|..+..+++|++|+|.++.+..
T Consensus 279 ~N~---l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 279 HNR---LT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp TSC---CS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCc---CC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 431 11 122234567778888777 56667788899999998866653
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.91 E-value=0.002 Score=52.00 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=29.5
Q ss_pred CCCCCCceEEeeeE-EecHHHHHH---HHhcCccceEEeeeecC
Q 019478 169 SNIKSLRSLCLDAV-NVSGEVLEF---FIYSCPLLARLRVVFSL 208 (340)
Q Consensus 169 ~~~~~L~~L~L~~~-~i~~~~l~~---lls~cp~Le~L~L~~c~ 208 (340)
...++|++|+|.++ .++++++.. .+..++.|++|+|.+|.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~ 76 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR 76 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC
Confidence 45788888888888 788766444 34557888888888875
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=94.48 E-value=0.023 Score=44.91 Aligned_cols=81 Identities=17% Similarity=0.266 Sum_probs=53.6
Q ss_pred CceeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cc-cCCcCCCcceE
Q 019478 241 PSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FV-LNAVSILNLKC 309 (340)
Q Consensus 241 p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~-~~~~~f~~L~~ 309 (340)
++|+.|+++++... -.++.+++|+.+++.... +.......+.++++|+.|+|. ++ ..+..+++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~---l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 106 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ---LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH 106 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC---cCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCE
Confidence 56677776666432 235678888888886551 222233456788999999998 33 34678889999
Q ss_pred EEEEcCCc-hhhhHHH
Q 019478 310 FRVVNNFL-CFCLILL 324 (340)
Q Consensus 310 L~l~~~~~-~~c~~l~ 324 (340)
|.+.+|.. +.|+.+.
T Consensus 107 L~L~~N~~~c~c~~l~ 122 (170)
T 3g39_A 107 IWLLNNPWDCACSDIL 122 (170)
T ss_dssp EECCSSCBCTTBGGGH
T ss_pred EEeCCCCCCCCchhHH
Confidence 99999754 3454443
No 146
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=94.48 E-value=0.0041 Score=50.35 Aligned_cols=98 Identities=12% Similarity=0.187 Sum_probs=53.4
Q ss_pred CCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEE--eccCCCcceEEEEecCCceEEEEE----CCceeE
Q 019478 172 KSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKV--VGSSVKLKYLDICYCYFMEEVEIS----APSVRS 245 (340)
Q Consensus 172 ~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i--~~~~~~L~~L~l~~c~~l~~l~i~----~p~L~~ 245 (340)
++|++|+|.+..+..-.-...+...++|++|+|.++. ++.+.- -...++|+.|.++++. ++.+.-. .++|+.
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 106 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKT 106 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCE
Confidence 3777777776655321111124566777777777764 222100 0123667777777665 4444321 366777
Q ss_pred EEEecccee----eecCCCcccceEEEeec
Q 019478 246 FKYYGPEIK----LRMENVPQLLDISIGGG 271 (340)
Q Consensus 246 l~l~~~~~~----~~~~~~~~L~~l~l~~~ 271 (340)
|+++++... -.++.+++|+.+++...
T Consensus 107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 107 LNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp EECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred EECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 777666432 23455677777776554
No 147
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=94.37 E-value=0.008 Score=57.48 Aligned_cols=111 Identities=13% Similarity=0.030 Sum_probs=78.7
Q ss_pred CCcceEEEEecCCceEEEE--ECCceeEEEEeccce---eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEE
Q 019478 220 VKLKYLDICYCYFMEEVEI--SAPSVRSFKYYGPEI---KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLE 294 (340)
Q Consensus 220 ~~L~~L~l~~c~~l~~l~i--~~p~L~~l~l~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~ 294 (340)
..|+.|.++++. ++.+.- ..++|+.|+++++.. +-.++.+++|+.+.+....-.. +. -+.++++|+.|+
T Consensus 441 ~~L~~L~Ls~n~-l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~----lp-~l~~l~~L~~L~ 514 (567)
T 1dce_A 441 ADVRVLHLAHKD-LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN----VD-GVANLPRLQELL 514 (567)
T ss_dssp TTCSEEECTTSC-CSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC----CG-GGTTCSSCCEEE
T ss_pred cCceEEEecCCC-CCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC----Cc-ccCCCCCCcEEE
Confidence 367788888775 444321 247899999988743 2346778899999887652111 22 467899999999
Q ss_pred EE------c--ccCCcCCCcceEEEEEcCCchhhhHHHHHHHHhcccccc
Q 019478 295 LG------F--VLNAVSILNLKCFRVVNNFLCFCLILLLFLRKICNSHNV 336 (340)
Q Consensus 295 l~------~--~~~~~~f~~L~~L~l~~~~~~~c~~l~~~~l~~cp~~~~ 336 (340)
|. + |..+..+++|+.|++.++.+...|.........+|+++.
T Consensus 515 Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred CCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 98 3 677788999999999998777766655556677787653
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.08 E-value=0.0029 Score=51.07 Aligned_cols=120 Identities=10% Similarity=-0.026 Sum_probs=63.9
Q ss_pred HHHHHHHHhcCccceEEeeeecCCcceEE---Ee---ccCCCcceEEEEecCCceEEEEECCceeEEEEeccceeeecCC
Q 019478 186 GEVLEFFIYSCPLLARLRVVFSLDLLSLK---VV---GSSVKLKYLDICYCYFMEEVEISAPSVRSFKYYGPEIKLRMEN 259 (340)
Q Consensus 186 ~~~l~~lls~cp~Le~L~L~~c~~~~~l~---i~---~~~~~L~~L~l~~c~~l~~l~i~~p~L~~l~l~~~~~~~~~~~ 259 (340)
++.+..++..++.|++|+|.+|..++.-. +. ...++|++|.++++. +.+-... ...-.+..
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~------------~l~~~L~~ 91 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAF------------ALAEMLKV 91 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHH------------HHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHH------------HHHHHHHh
Confidence 45688889999999999999984443211 11 123677777777765 2210000 00000112
Q ss_pred CcccceEEEeec-cCchhhhhhhhhhccCCCcceEEE--E-----------cccCCcCCCcceEEEEEcCCch
Q 019478 260 VPQLLDISIGGG-YGVRMKHAISPIMSYFHQLETLEL--G-----------FVLNAVSILNLKCFRVVNNFLC 318 (340)
Q Consensus 260 ~~~L~~l~l~~~-~~~~~~~~~~~ll~~~~~L~~L~l--~-----------~~~~~~~f~~L~~L~l~~~~~~ 318 (340)
.++|++++|..+ .++.-...+...+...++|++|+| . +.+.+...++|++|++.++.++
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 344555555443 111111234445556666777777 4 2233445567788877765544
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=94.02 E-value=0.057 Score=47.48 Aligned_cols=36 Identities=11% Similarity=0.176 Sum_probs=22.9
Q ss_pred CCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecC
Q 019478 172 KSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSL 208 (340)
Q Consensus 172 ~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~ 208 (340)
.+++.+.+.+. +...++..+...|++|++|+|.++.
T Consensus 202 ~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~ 237 (329)
T 3sb4_A 202 RDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTN 237 (329)
T ss_dssp GGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBC
T ss_pred cccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCC
Confidence 34445555443 4555666666678888888888653
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=93.41 E-value=0.048 Score=43.21 Aligned_cols=75 Identities=12% Similarity=0.129 Sum_probs=50.0
Q ss_pred CceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------ccc-CCcCCCcceE
Q 019478 241 PSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVL-NAVSILNLKC 309 (340)
Q Consensus 241 p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~-~~~~f~~L~~ 309 (340)
++|+.|.++++.. +-.++.+++|+.+++... .+.......+.++++|+.|+|. ++. .+..+++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N---~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 109 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN---KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTH 109 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS---CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC---CCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCE
Confidence 5666666666533 123567788888888655 1122223445688999999998 333 3677889999
Q ss_pred EEEEcCCch
Q 019478 310 FRVVNNFLC 318 (340)
Q Consensus 310 L~l~~~~~~ 318 (340)
|.+.++...
T Consensus 110 L~L~~N~~~ 118 (174)
T 2r9u_A 110 IYLYNNPWD 118 (174)
T ss_dssp EECCSSCBC
T ss_pred EEeCCCCcc
Confidence 999997554
No 151
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=92.57 E-value=0.052 Score=43.81 Aligned_cols=76 Identities=17% Similarity=0.138 Sum_probs=51.7
Q ss_pred CceeEEEEeccce---eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcceEE
Q 019478 241 PSVRSFKYYGPEI---KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLKCF 310 (340)
Q Consensus 241 p~L~~l~l~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~~L 310 (340)
++|+.|.+.++.. +-.+..+++|+.+.+.... +.......+.++++|+.|+|. .+..+..+++|++|
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~---i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR---ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc---CCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEE
Confidence 4666666665532 1246678889999887551 122223456789999999998 23457788999999
Q ss_pred EEEcCCchh
Q 019478 311 RVVNNFLCF 319 (340)
Q Consensus 311 ~l~~~~~~~ 319 (340)
++.++.+..
T Consensus 108 ~L~~N~l~~ 116 (193)
T 2wfh_A 108 SLHGNDISV 116 (193)
T ss_dssp ECCSSCCCB
T ss_pred ECCCCCCCe
Confidence 999865543
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=92.00 E-value=0.14 Score=46.55 Aligned_cols=14 Identities=14% Similarity=0.066 Sum_probs=8.8
Q ss_pred CCCCCCCCceEEee
Q 019478 167 TLSNIKSLRSLCLD 180 (340)
Q Consensus 167 ~~~~~~~L~~L~L~ 180 (340)
.+.+|++|+.+.|.
T Consensus 175 aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 175 IFYYCYNLKKADLS 188 (401)
T ss_dssp TTTTCTTCCEEECT
T ss_pred HhhCcccCCeeecC
Confidence 35566666666664
No 153
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=91.98 E-value=0.0075 Score=59.50 Aligned_cols=100 Identities=15% Similarity=0.213 Sum_probs=58.2
Q ss_pred CCCCCCCCCceEEeeeEEecHHHHHHHHhcCccceEEeeeecCCcceEEEe---ccCCCcceEEEEecCCceEEEE---E
Q 019478 166 RTLSNIKSLRSLCLDAVNVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVV---GSSVKLKYLDICYCYFMEEVEI---S 239 (340)
Q Consensus 166 ~~~~~~~~L~~L~L~~~~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~---~~~~~L~~L~l~~c~~l~~l~i---~ 239 (340)
..+..+++|+.|+|.++.+.. +..-+..+++|++|+|.++. ++ .++ ..+++|+.|.++++. ++.+.- .
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~ 291 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNS-LT--ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGS 291 (727)
T ss_dssp ----CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSC-CS--CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGG
T ss_pred hhhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCc-Cc--ccChhhhCCCCCCEEeCcCCc-CCccChhhcC
Confidence 344667778888777766541 11113357778888887774 22 122 134677777777765 443311 1
Q ss_pred CCceeEEEEeccce---eeecCCCcccceEEEeec
Q 019478 240 APSVRSFKYYGPEI---KLRMENVPQLLDISIGGG 271 (340)
Q Consensus 240 ~p~L~~l~l~~~~~---~~~~~~~~~L~~l~l~~~ 271 (340)
.++|+.|.++++.. +..++.+++|+.+.|..+
T Consensus 292 l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp GTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTS
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCccEEeCCCC
Confidence 36778887776632 223667788888887665
No 154
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=91.65 E-value=0.079 Score=41.81 Aligned_cols=75 Identities=15% Similarity=0.138 Sum_probs=48.6
Q ss_pred CceeEEEEecccee----eecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cc-cCCcCCCcceE
Q 019478 241 PSVRSFKYYGPEIK----LRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FV-LNAVSILNLKC 309 (340)
Q Consensus 241 p~L~~l~l~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~-~~~~~f~~L~~ 309 (340)
++|+.|.+.++... ..++.+++|+.+.+.... +.......+.++++|+.|++. ++ ..+..+++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 104 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ---IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKE 104 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc---ceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCE
Confidence 45666666554321 124667888888886541 112223446689999999998 22 34567889999
Q ss_pred EEEEcCCch
Q 019478 310 FRVVNNFLC 318 (340)
Q Consensus 310 L~l~~~~~~ 318 (340)
|++.++.+.
T Consensus 105 L~l~~N~l~ 113 (177)
T 2o6r_A 105 LALDTNQLK 113 (177)
T ss_dssp EECCSSCCS
T ss_pred EECcCCcce
Confidence 999985544
No 155
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=88.71 E-value=0.24 Score=43.66 Aligned_cols=77 Identities=14% Similarity=0.227 Sum_probs=45.6
Q ss_pred ceeEEEEec-cce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cccCCcCCCcceEE
Q 019478 242 SVRSFKYYG-PEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVLNAVSILNLKCF 310 (340)
Q Consensus 242 ~L~~l~l~~-~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~~~~~f~~L~~L 310 (340)
+|+.|++++ +.. .-.++++++|+.++|... .+.......+.++++|+.|+|. ++.......+|+.|
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N---~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l 108 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS---GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQEL 108 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS---CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEE
T ss_pred CeeEEEccCCCCCCCcChhHhccccCCCEEECCCC---ccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEE
Confidence 455555553 321 123667788888888654 2222333456788999999998 33322222249999
Q ss_pred EEEcCCch-hhh
Q 019478 311 RVVNNFLC-FCL 321 (340)
Q Consensus 311 ~l~~~~~~-~c~ 321 (340)
.+.++.+. .|.
T Consensus 109 ~l~~N~~~c~c~ 120 (347)
T 2ifg_A 109 VLSGNPLHCSCA 120 (347)
T ss_dssp ECCSSCCCCCGG
T ss_pred EeeCCCccCCCc
Confidence 99986554 454
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=85.13 E-value=0.33 Score=43.68 Aligned_cols=31 Identities=13% Similarity=0.119 Sum_probs=19.1
Q ss_pred hccCCCcceEEEE-----c-ccCCcCCCcceEEEEEc
Q 019478 284 MSYFHQLETLELG-----F-VLNAVSILNLKCFRVVN 314 (340)
Q Consensus 284 l~~~~~L~~L~l~-----~-~~~~~~f~~L~~L~l~~ 314 (340)
+.+|.+|+.+.+. + ...+..+.+|+.+++-.
T Consensus 339 F~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 339 FRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEG
T ss_pred ccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECC
Confidence 4566777776664 1 23455667777777754
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=83.35 E-value=0.83 Score=38.83 Aligned_cols=54 Identities=19% Similarity=0.124 Sum_probs=34.0
Q ss_pred hhhccCCCcceEEEE---c--ccCCcCCC--cceEEEEEcCCchh----hhHHHHHHHHhccccc
Q 019478 282 PIMSYFHQLETLELG---F--VLNAVSIL--NLKCFRVVNNFLCF----CLILLLFLRKICNSHN 335 (340)
Q Consensus 282 ~ll~~~~~L~~L~l~---~--~~~~~~f~--~L~~L~l~~~~~~~----c~~l~~~~l~~cp~~~ 335 (340)
.++..+++|+.|+|+ + ...+..+. +|++|.+.+|.+.. .+......++.+|+++
T Consensus 190 ~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~ 254 (267)
T 3rw6_A 190 SIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLL 254 (267)
T ss_dssp THHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCC
T ss_pred hHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccC
Confidence 445577777777776 1 11233333 88888888876654 3355566788888764
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=80.43 E-value=0.71 Score=40.54 Aligned_cols=62 Identities=13% Similarity=0.009 Sum_probs=44.7
Q ss_pred cCCCcccceEEEee-ccCchhhhhhhhhhccCCCcceEEEE-------cccCCcCCCcceEEEEEcCCchhhh
Q 019478 257 MENVPQLLDISIGG-GYGVRMKHAISPIMSYFHQLETLELG-------FVLNAVSILNLKCFRVVNNFLCFCL 321 (340)
Q Consensus 257 ~~~~~~L~~l~l~~-~~~~~~~~~~~~ll~~~~~L~~L~l~-------~~~~~~~f~~L~~L~l~~~~~~~c~ 321 (340)
+....+|+.++|.. . .+.......+.++++|+.|+|. .+..+..+++|++|+|.+|.+...|
T Consensus 27 l~~~~~L~~L~l~~~n---~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 96 (347)
T 2ifg_A 27 LPGAENLTELYIENQQ---HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS 96 (347)
T ss_dssp SCSCSCCSEEECCSCS---SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred CCCCCCeeEEEccCCC---CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC
Confidence 56677889988863 3 2222233457799999999998 3456678999999999997666543
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=80.39 E-value=0.12 Score=44.03 Aligned_cols=37 Identities=22% Similarity=0.187 Sum_probs=16.4
Q ss_pred CCCCceEEeeeEEecH-HHHHHHHhcCccceEEeeeec
Q 019478 171 IKSLRSLCLDAVNVSG-EVLEFFIYSCPLLARLRVVFS 207 (340)
Q Consensus 171 ~~~L~~L~L~~~~i~~-~~l~~lls~cp~Le~L~L~~c 207 (340)
+|+|++|+|++..+.. +++..++..+|+|+.|+|.+.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC
Confidence 4455555555444332 123333344555555555443
No 160
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=80.38 E-value=0.75 Score=35.90 Aligned_cols=57 Identities=12% Similarity=0.062 Sum_probs=39.6
Q ss_pred CcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------cc-cCCcCCCcceEEEEEcCCchh
Q 019478 260 VPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FV-LNAVSILNLKCFRVVNNFLCF 319 (340)
Q Consensus 260 ~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~-~~~~~f~~L~~L~l~~~~~~~ 319 (340)
.++|+.+++... .+.......+.++++|+.|+|. ++ ..+..+++|++|++.++.+..
T Consensus 29 ~~~l~~L~L~~N---~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~ 92 (170)
T 3g39_A 29 PTTTQVLYLYDN---QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92 (170)
T ss_dssp CTTCSEEECCSS---CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCcEEEcCCC---cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCE
Confidence 477888887654 2122223456789999999998 33 345688999999999865543
No 161
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=78.43 E-value=1.1 Score=35.00 Aligned_cols=57 Identities=9% Similarity=0.069 Sum_probs=40.0
Q ss_pred CcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE------ccc-CCcCCCcceEEEEEcCCchh
Q 019478 260 VPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG------FVL-NAVSILNLKCFRVVNNFLCF 319 (340)
Q Consensus 260 ~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~------~~~-~~~~f~~L~~L~l~~~~~~~ 319 (340)
.++|+.+.+... .+.......+.++++|+.|+|. ++. .+..+++|++|++.++.+..
T Consensus 32 ~~~L~~L~Ls~N---~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~ 95 (174)
T 2r9u_A 32 PTDKQRLWLNNN---QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95 (174)
T ss_dssp CTTCSEEECCSS---CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCcEEEeCCC---CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce
Confidence 478888888654 2222233456789999999998 333 35688999999999865443
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=77.86 E-value=0.93 Score=40.71 Aligned_cols=53 Identities=17% Similarity=0.124 Sum_probs=20.6
Q ss_pred cCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE----cccCCcCCCcceEEEEE
Q 019478 257 MENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG----FVLNAVSILNLKCFRVV 313 (340)
Q Consensus 257 ~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~----~~~~~~~f~~L~~L~l~ 313 (340)
+.+|.+|+++.|.-. +...-...+.+|.+|+.+++. ....+..+.+|+.+.+.
T Consensus 330 F~~C~~L~~i~ip~s----v~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 330 FAGCEQLERIAIPSS----VTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVA 386 (394)
T ss_dssp TTTCTTCCEEEECTT----CCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC------
T ss_pred hhCCCCCCEEEECcc----cCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeC
Confidence 455566666555311 001111224456666666654 11233444455555543
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=74.64 E-value=2.3 Score=38.03 Aligned_cols=114 Identities=15% Similarity=0.134 Sum_probs=57.3
Q ss_pred CCCCCCCCceEEeeeE--EecHHHHHHHHhcCccceEEeeeecCCcceEEEec----cCCCcceEEEEecCCceEEEE--
Q 019478 167 TLSNIKSLRSLCLDAV--NVSGEVLEFFIYSCPLLARLRVVFSLDLLSLKVVG----SSVKLKYLDICYCYFMEEVEI-- 238 (340)
Q Consensus 167 ~~~~~~~L~~L~L~~~--~i~~~~l~~lls~cp~Le~L~L~~c~~~~~l~i~~----~~~~L~~L~l~~c~~l~~l~i-- 238 (340)
.+.++.+|+.+.+... .+.... ...|+.|+.+..... .+.. .+.+|+.+.+.+ .++.|.-
T Consensus 248 ~f~~~~~l~~~~~~~~~~~i~~~~----F~~~~~l~~~~~~~~------~i~~~~F~~~~~L~~i~l~~--~i~~I~~~a 315 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNKLRIGGSL----FYNCSGLKKVIYGSV------IVPEKTFYGCSSLTEVKLLD--SVKFIGEEA 315 (394)
T ss_dssp TTTTCSSCCEEEECCTTCEECSCT----TTTCTTCCEEEECSS------EECTTTTTTCTTCCEEEECT--TCCEECTTT
T ss_pred cccccccceeEEcCCCcceeeccc----cccccccceeccCce------eecccccccccccccccccc--ccceechhh
Confidence 3466777777777532 233222 345666666655421 0111 224445444421 1233221
Q ss_pred --ECCceeEEEEeccce---eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE
Q 019478 239 --SAPSVRSFKYYGPEI---KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG 296 (340)
Q Consensus 239 --~~p~L~~l~l~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~ 296 (340)
.+.+|+++.+..... ...+.+|.+|+.+.+... +...-...+.+|++|+.+++.
T Consensus 316 F~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~----l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 316 FESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS----LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT----CCEECTTTBTTCTTCCEEEEE
T ss_pred hcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc----ccEehHHHhhCCCCCCEEEEC
Confidence 135555555543321 234677888888776422 111112346688899998887
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=62.92 E-value=7.7 Score=34.53 Aligned_cols=70 Identities=13% Similarity=0.180 Sum_probs=41.0
Q ss_pred CceeEEEEeccce---eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-----c-ccCCcCCCcceEEE
Q 019478 241 PSVRSFKYYGPEI---KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-----F-VLNAVSILNLKCFR 311 (340)
Q Consensus 241 p~L~~l~l~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-----~-~~~~~~f~~L~~L~ 311 (340)
++|+.+.+..... ...+.+|.+|+.+.|.-. +...-...+.+|.+|+.+.+. + ...+..+.+|+.++
T Consensus 288 ~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~----v~~I~~~aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 288 PALQDIEFSSRITELPESVFAGCISLKSIDIPEG----ITQILDDAFAGCEQLERIAIPSSVTKIPESAFSNCTALNNIE 363 (394)
T ss_dssp TTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT----CCEECTTTTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCEEE
T ss_pred cccccccCCCcccccCceeecCCCCcCEEEeCCc----ccEehHhHhhCCCCCCEEEECcccCEEhHhHhhCCCCCCEEE
Confidence 5566665543322 224566777777766321 111112345688888888885 2 23466778888888
Q ss_pred EEc
Q 019478 312 VVN 314 (340)
Q Consensus 312 l~~ 314 (340)
+..
T Consensus 364 ~~~ 366 (394)
T 4gt6_A 364 YSG 366 (394)
T ss_dssp ESS
T ss_pred ECC
Confidence 865
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=50.41 E-value=4.7 Score=35.66 Aligned_cols=53 Identities=9% Similarity=0.113 Sum_probs=24.1
Q ss_pred cCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE-----c-ccCCcCCCcceEEEE
Q 019478 257 MENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG-----F-VLNAVSILNLKCFRV 312 (340)
Q Consensus 257 ~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~-----~-~~~~~~f~~L~~L~l 312 (340)
+.+|.+|+++.+... .+...-...+.+|.+|+.+.|. + ...+..+.+|+.+.+
T Consensus 282 F~~c~~L~~i~l~~~---~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 282 CSGCSNLTKVVMDNS---AIETLEPRVFMDCVKLSSVTLPTALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTCTTCCEEEECCT---TCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCCCCC
T ss_pred ccccccccccccccc---ccceehhhhhcCCCCCCEEEcCccccEEHHHHhhCCCCCCEEEE
Confidence 455666666655321 0000111234466666666664 1 123444555555554
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=43.23 E-value=6.5 Score=34.70 Aligned_cols=53 Identities=9% Similarity=0.091 Sum_probs=31.0
Q ss_pred CCceeEEEEeccce----eeecCCCcccceEEEeeccCchhhhhhhhhhccCCCcceEEEE
Q 019478 240 APSVRSFKYYGPEI----KLRMENVPQLLDISIGGGYGVRMKHAISPIMSYFHQLETLELG 296 (340)
Q Consensus 240 ~p~L~~l~l~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~l~ 296 (340)
+++|+++.+.+... ...+.+|.+|+.+.|.-. +...-...+.+|.+|+.+.+.
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~----l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA----LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT----CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCcc----ccEEHHHHhhCCCCCCEEEEC
Confidence 36677776654421 234677888888877421 111112335688888888774
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=40.59 E-value=12 Score=30.05 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=22.8
Q ss_pred CCCceEEeeeEEecHHH---HHHHHhcCccceEEeeeecC
Q 019478 172 KSLRSLCLDAVNVSGEV---LEFFIYSCPLLARLRVVFSL 208 (340)
Q Consensus 172 ~~L~~L~L~~~~i~~~~---l~~lls~cp~Le~L~L~~c~ 208 (340)
..|+.|+|.++.++|.+ +...+.....|++|+|.++.
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 45667777666666654 44445556666777766653
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=34.64 E-value=19 Score=28.73 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=29.1
Q ss_pred CCCceEEeeeEEecHHHHHHHHhc---CccceEEeeeec
Q 019478 172 KSLRSLCLDAVNVSGEVLEFFIYS---CPLLARLRVVFS 207 (340)
Q Consensus 172 ~~L~~L~L~~~~i~~~~l~~lls~---cp~Le~L~L~~c 207 (340)
..|+.|+|.+..|++++...+... ...|++|+|.++
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 689999999999999887766544 556889988865
No 169
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=26.79 E-value=40 Score=19.73 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=15.3
Q ss_pred ccccCCcCCCCChHHHHHHHhc
Q 019478 14 DEILVDWISRLPDEILVNIISR 35 (340)
Q Consensus 14 ~~~~~d~~s~LPd~il~~Ils~ 35 (340)
++.+.+-|+.||.||-..|++-
T Consensus 14 ~~VD~eVF~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 14 EGVDQEVFKQLPADIQEEILSG 35 (48)
T ss_dssp TTCCGGGTTTSCHHHHHHHTTC
T ss_pred CCCCHHHHHHCcHHHHHHHHhc
Confidence 3445566788888888887763
Done!