BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019479
(340 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 164 IIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215
I++GD ++P +YAD VS GS+ +W D +E YR+LK GGK + G
Sbjct: 97 IVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGG 148
>pdb|1VLM|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
pdb|1VLM|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
Length = 219
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 164 IIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWL 223
+++G AE+LP + D + +I + DP+R +KEAYR+LK GG ++G V +L
Sbjct: 88 VLKGTAENLPLKDESFDFALXVTTICFVDDPERALKEAYRILKKGG-YLIVGIVDRESFL 146
Query: 224 SR----------FFADVWMLFPKEEEYIEWFQKAGFKDVKL 254
R F+ + F EE + +KAGF++ K+
Sbjct: 147 GREYEKNKEKSVFYKNAR--FFSTEELXDLXRKAGFEEFKV 185
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 143 LDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAY 202
+D S + K K++ + + I+GD LPF + + + S+E+ +P R + E
Sbjct: 81 VDISEVXIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIXAINSLEWTEEPLRALNEIK 140
Query: 203 RVLKIGGKAC--VIGPV 217
RVLK G AC ++GP
Sbjct: 141 RVLKSDGYACIAILGPT 157
>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
Length = 260
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 160 KECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYP 219
++ ++GDAE PF + + ++P+P + EAYRVLK GG+ ++ P
Sbjct: 85 QQVEYVQGDAEQXPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAP 144
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 140 VTILDQSPHQLAKAKQ---KEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQR 196
+T +D SP L KA++ K +K ++ + LPF D +E+ P+
Sbjct: 64 ITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEE 123
Query: 197 GIKEAYRVLKIGGKACVI 214
+K +VLK GG VI
Sbjct: 124 ALKSLKKVLKPGGTITVI 141
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 61/166 (36%), Gaps = 20/166 (12%)
Query: 145 QSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRV 204
Q A+A T DA DLPF D + S+ + PD R ++E RV
Sbjct: 96 QVNQANARATAAGLANRVTFSYADAXDLPFEDASFDAVWALESLHHXPDRGRALREXARV 155
Query: 205 LKIGGKACVIGPVYPTFWLSRFFADVWMLFPKE---EEYIEWFQKAGFKDVKLKRIGPKW 261
L+ GG + AD +L P E +E ++ F+ G L G
Sbjct: 156 LRPGGTVAI--------------ADFVLLAPVEGAKKEAVDAFRAGGG---VLSLGGIDE 198
Query: 262 YRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKAEDVQKPVNPFVFA 307
Y R ++ S + + S ++ E+ + V PF A
Sbjct: 199 YESDVRQAELVVTSTVDISAQARPSLVKTAEAFENARSQVEPFXGA 244
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 155 QKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214
Q++ ++ +G AE LPFP D D + ++ D ++ ++E RVLK G+ ++
Sbjct: 64 QEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLV 123
Query: 215 GPVYP 219
P
Sbjct: 124 DHYAP 128
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
Length = 211
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 143 LDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAY 202
++ S LA +++ P E T + E LPFP + D + ++E+ D +R + EA
Sbjct: 62 VEPSEAXLAVGRRRAP--EATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEAR 119
Query: 203 RVLKIGGKACVIG 215
RVL+ GG A V+G
Sbjct: 120 RVLRPGG-ALVVG 131
>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
Length = 260
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 139 NVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSI-EYWPDPQRG 197
V ++D S L A++K ++E AEDLPFP+ + ++ G + Y + +
Sbjct: 78 EVVLVDPSKEXLEVAREKGV---KNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKA 134
Query: 198 IKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVW 231
E RVL G + TF D W
Sbjct: 135 FSEIRRVLVPDGLLIATVDNFYTFLQQXIEKDAW 168
>pdb|2P8J|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
pdb|2P8J|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
Length = 209
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 146 SPHQLAKAKQ--KEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW--PDPQRGIKEA 201
S QL KA+ +E + I +GD LPF + S G+I + D + I E
Sbjct: 55 SDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESXSFVYSYGTIFHXRKNDVKEAIDEI 114
Query: 202 YRVLKIGGKACV 213
RVLK GG AC+
Sbjct: 115 KRVLKPGGLACI 126
>pdb|3E7P|A Chain A, Crystal Structure Of Of Putative Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 270
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 61/155 (39%), Gaps = 10/155 (6%)
Query: 103 EALEPADLFDRNMRVVDVXXXXXXXXXXIVKHVDAKNVTILDQSP---HQLAKAKQKEPL 159
+AL D + D+ + +HV K +T +D P + K +K L
Sbjct: 37 KALSFIDNLTNKSLIADLGCGTGGQTMILAQHVPGK-ITGIDFFPGFIERFNKNAEKLNL 95
Query: 160 KE-CTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVY 218
+ I G +DL F D D S G+I Y +RG+KE LK GG V V+
Sbjct: 96 QNRVKGIVGSMDDLSFEKDSLDLIWSEGAI-YNIGFERGLKEWRNYLKPGGYLAVSESVW 154
Query: 219 PTFWLSRFFADVWMLFPKEEEY----IEWFQKAGF 249
T D WM E + + QKAG+
Sbjct: 155 FTDQRPAEIHDFWMSAYTEIDTVPNKVAQIQKAGY 189
>pdb|3T7R|A Chain A, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7R|B Chain B, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|A Chain A, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|B Chain B, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|C Chain C, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|D Chain D, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|A Chain A, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|B Chain B, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|C Chain C, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|D Chain D, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
Length = 268
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 53/134 (39%), Gaps = 6/134 (4%)
Query: 103 EALEPADLFDRNMRVVDVXXXXXXXXXXIVKHVDAKNVTILDQSP---HQLAKAKQKEPL 159
+AL D + D+ + +HV K +T +D P + K +K L
Sbjct: 42 KALSFIDNLTNKSLIADLGCGTGGQTMILAQHVPGK-ITGIDFFPGFIERFNKNAEKLNL 100
Query: 160 KE-CTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVY 218
+ I G +DL F D D S G+I Y +RG+KE LK GG V V+
Sbjct: 101 QNRVKGIVGSMDDLSFEKDSLDLIWSEGAI-YNIGFERGLKEWRNYLKPGGYLAVSESVW 159
Query: 219 PTFWLSRFFADVWM 232
T D WM
Sbjct: 160 FTDQRPAEIHDFWM 173
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 31/73 (42%)
Query: 137 AKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQR 196
A V LD S LA+A+ P T D + L P D D S+ ++ Y D R
Sbjct: 66 ASYVLGLDLSEKXLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVAR 125
Query: 197 GIKEAYRVLKIGG 209
+ ++ L GG
Sbjct: 126 LFRTVHQALSPGG 138
>pdb|3KKZ|A Chain A, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250.
pdb|3KKZ|B Chain B, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250
Length = 267
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 152 KAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKA 211
A+Q T I G +DLPF + D S G+I Y +RG+ E + LK GG
Sbjct: 88 NARQSGLQNRVTGIVGSXDDLPFRNEELDLIWSEGAI-YNIGFERGLNEWRKYLKKGGYL 146
Query: 212 CV 213
V
Sbjct: 147 AV 148
>pdb|3DTN|A Chain A, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei .
pdb|3DTN|B Chain B, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei
Length = 234
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 34/142 (23%)
Query: 141 TILDQSPH--QLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRG- 197
T++D S ++AK + + LK IE D F Y D VSA SI + D +
Sbjct: 72 TLVDMSEKMLEIAKNRFRGNLK-VKYIEADYSKYDFEEKY-DMVVSALSIHHLEDEDKKE 129
Query: 198 -IKEAYRVLK----------IGGKACVIGPVYPTFWLSRFFADVWMLFPKE--------- 237
K +Y +LK + G+ I + T W R + + L +E
Sbjct: 130 LYKRSYSILKESGIFINADLVHGETAFIENLNKTIW--RQYVENSGLTEEEIAAGYERSK 187
Query: 238 -------EEYIEWFQKAGFKDV 252
+ + W ++AGF+DV
Sbjct: 188 LDKDIEMNQQLNWLKEAGFRDV 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,521,602
Number of Sequences: 62578
Number of extensions: 452864
Number of successful extensions: 865
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 856
Number of HSP's gapped (non-prelim): 16
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)