BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019479
(340 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P23525|IN37_SPIOL 37 kDa inner envelope membrane protein, chloroplastic OS=Spinacia
oleracea PE=1 SV=1
Length = 344
Score = 522 bits (1345), Expect = e-147, Method: Compositional matrix adjust.
Identities = 271/344 (78%), Positives = 300/344 (87%), Gaps = 4/344 (1%)
Query: 1 MASSMLSGADSLRLMSGISPTGLGFVGSNLHLK-SFTKKGLVSFTSDQNAKFFTP--RCS 57
MA SML+G D L L+SG +P L F GS+ + L + + AK T +C+
Sbjct: 1 MACSMLNGVDKLALISGKTPNRLRFSGSDFTGSYKLPRLNLPPNSRNLRAKTLTTVTKCT 60
Query: 58 LSSS-RPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMR 116
LS+S RPASQPRFIQ+K+EAFWFYRFLSIVYD++INPGHWTEDMRD ALEPADL +RNM
Sbjct: 61 LSASERPASQPRFIQNKQEAFWFYRFLSIVYDNIINPGHWTEDMRDVALEPADLNNRNML 120
Query: 117 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPT 176
VVDVGGGTGFTTLGI+KHVD KNVTILDQSPHQLAKAK K+PLKEC IIEGDAEDLPFPT
Sbjct: 121 VVDVGGGTGFTTLGIIKHVDPKNVTILDQSPHQLAKAKAKKPLKECRIIEGDAEDLPFPT 180
Query: 177 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPK 236
DYADRYVSAGSIEYWPDPQRGI+EAYRVLK+GGKAC+IGPVYPTFWLSRFFADVWMLFPK
Sbjct: 181 DYADRYVSAGSIEYWPDPQRGIREAYRVLKLGGKACLIGPVYPTFWLSRFFADVWMLFPK 240
Query: 237 EEEYIEWFQKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKAED 296
EEEYIEWFQKAGFKDV+LKRIGPKWYRGVRRHGLIMGCSVTGVKP SGDSPLQLGPK ED
Sbjct: 241 EEEYIEWFQKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKVED 300
Query: 297 VQKPVNPFVFALRFILGAIAATYFVLVPIYMWLKDQIVPKGQPI 340
VQKPV+P VF RF+LGA+A+TY+VLVPIYMW+KD+I PKG P+
Sbjct: 301 VQKPVHPLVFLYRFLLGALASTYYVLVPIYMWIKDKIFPKGMPL 344
>sp|C3MCY6|UBIE_RHISN Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rhizobium sp. (strain NGR234) GN=ubiE PE=3 SV=1
Length = 258
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 114 NMRVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECTIIEGD 168
N RV+DV GGTG IV+ K + T+LD + LA +A++K L +E +
Sbjct: 71 NYRVLDVAGGTGDIAFRIVEASGRKAHATVLDINGSMLAVGAERARKKGLLGNLEFVEAN 130
Query: 169 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFA 228
AEDLPF + D Y A I P + +KEAYRVLK GG+ V+ L F
Sbjct: 131 AEDLPFAANSFDAYTIAFGIRNVPRIEVALKEAYRVLKRGGRLLVLEFSEVEMPLLDRFY 190
Query: 229 DVW 231
D W
Sbjct: 191 DAW 193
>sp|Q92SK7|UBIE_RHIME Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rhizobium meliloti (strain 1021) GN=ubiE PE=3 SV=2
Length = 258
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 114 NMRVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECTIIEGD 168
+ RV+DV GGTG IV+ K + T+LD + L+ +A++K +E +
Sbjct: 71 DYRVLDVAGGTGDIAFRIVERSGRKAHATVLDINGSMLSVGAERARKKGIEANLDFVEAN 130
Query: 169 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFA 228
AEDLPF + D Y A I P + +KEAYRVLK GG+ V+ L F
Sbjct: 131 AEDLPFAANSFDAYTIAFGIRNVPRIEVALKEAYRVLKRGGRLLVLEFSEVEMPLLDRFY 190
Query: 229 DVW 231
D W
Sbjct: 191 DAW 193
>sp|A6UFF7|UBIE_SINMW Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Sinorhizobium medicae (strain WSM419) GN=ubiE PE=3
SV=1
Length = 258
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 114 NMRVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECTIIEGD 168
+ RV+DV GGTG IV+ K T+LD + L+ +A++K +E +
Sbjct: 71 DYRVLDVAGGTGDIAFRIVERSGRKAQATVLDINGSMLSVGAERARKKGIEANLEFVEAN 130
Query: 169 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFA 228
AEDLPF + D Y A I P + ++EAYRVLK GG+ V+ L F
Sbjct: 131 AEDLPFAANSFDAYTIAFGIRNVPRIEVALREAYRVLKRGGRLLVLEFSEVEMPLLDRFY 190
Query: 229 DVW 231
D W
Sbjct: 191 DAW 193
>sp|Q8UIH5|UBIE_AGRT5 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970)
GN=ubiE PE=3 SV=1
Length = 259
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 5/108 (4%)
Query: 112 DRNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLA----KAKQKEPLKECTIIE 166
D + +++DV GGTG I++ + + T+LD + LA +A +K+ T +E
Sbjct: 70 DPSYKILDVAGGTGDVAFRIIEASNRLAHATVLDINGSMLAVGEERAAKKKLSDNLTFVE 129
Query: 167 GDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214
+AE+LPF + D Y A I P +KEAYRVLK GG+ V+
Sbjct: 130 ANAEELPFEANTFDAYTVAFGIRNVPRIDVALKEAYRVLKRGGRLLVL 177
>sp|Q8KF69|UBIE_CHLTE Demethylmenaquinone methyltransferase OS=Chlorobium tepidum (strain
ATCC 49652 / DSM 12025 / TLS) GN=ubiE PE=3 SV=1
Length = 242
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED 171
+R +++DV GTG + K AK VT D SP LA A++K P +EG AE
Sbjct: 62 EREPKILDVATGTGDLAASMAKIPGAK-VTGYDLSPEMLAIARKKYP--NIEFLEGFAEK 118
Query: 172 LPFPTDYADRYVSAG-SIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYP 219
+PF D + VSAG + + D +G+KE +RVLK GG A +I P+ P
Sbjct: 119 MPF-DDRSFHVVSAGFGVRNFEDLAQGMKEFHRVLKPGGCAYIIEPMIP 166
>sp|Q1GC56|UBIE_RUEST Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Ruegeria sp. (strain TM1040) GN=ubiE PE=3 SV=1
Length = 250
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 30/172 (17%)
Query: 116 RVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTI-IEGDAED 171
R++DV GGTG + +K + T+LD + L + +++ E + EC + GDA
Sbjct: 66 RLLDVAGGTGDISFRFLKRAGHGHSTVLDLTTPMLEEGRKRAEAEQMAECLDWVTGDAMA 125
Query: 172 LPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACV----------IGPVYPTF 221
LPF + D Y + I PQ + EAYRVLK GG+ V + +Y +
Sbjct: 126 LPFKDNTFDVYTISFGIRNVTRPQEALNEAYRVLKPGGRLMVLEFSQLPNDGLQKLYDLY 185
Query: 222 WLS----------------RFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257
+ ++ + FP +E ++ + AGF++ K + +
Sbjct: 186 SFNVIPRMGQMIAGDYDSYQYLVESIRNFPDQETFLGMVKSAGFENAKHRNL 237
>sp|P46326|YXBB_BACSU Uncharacterized protein YxbB OS=Bacillus subtilis (strain 168)
GN=yxbB PE=3 SV=1
Length = 244
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Query: 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP--HQLAKAKQKEPLKECTIIEGDAE 170
+N ++D+G G G+ ++ + K +A +V +D +P H++A+ + K+ ++I D E
Sbjct: 36 KNKVIIDMGTGPGYLSIQLAKRTNA-HVHAVDINPAMHEIAQEEAKKS-GVSSLISFDLE 93
Query: 171 D---LPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYP 219
D L + YAD VS + +W D +G+KE YRVL GGK ++ P
Sbjct: 94 DVHHLSYADQYADFIVSYSCLHHWEDVVKGLKECYRVLAPGGKIVILDTFNP 145
>sp|B9J7S8|UBIE_AGRRK Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868)
GN=ubiE PE=3 SV=1
Length = 258
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Query: 112 DRNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLA----KAKQKEPLKECTIIE 166
D + +V+DV GGTG IV+ + + T+LD + L +A +K+ T +E
Sbjct: 69 DPSYKVLDVAGGTGDIAFRIVEASNRLAHATVLDINGSMLGVGAERAAKKKLTDNLTFVE 128
Query: 167 GDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214
+AE+LPF + D Y A I P +KEAYRVLK GG+ V+
Sbjct: 129 ANAEELPFEPNSFDAYTIAFGIRNVPRIDVALKEAYRVLKRGGRLLVL 176
>sp|Q8CSH9|UBIE_STAES Demethylmenaquinone methyltransferase OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=ubiE PE=3 SV=1
Length = 241
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 13/147 (8%)
Query: 116 RVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLP 173
+ +DV GT T+ + + V +K VT LD S + L KQK L+ ++ GDA +LP
Sbjct: 52 KALDVCCGTADWTIALSEAVGSKGQVTGLDFSENMLEVGKQKTASLENIQLVHGDAMNLP 111
Query: 174 FPTDYADRYVSAG-SIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWM 232
F + D YV+ G + PD +KE +RVLK GG + PT L + ++
Sbjct: 112 FDDNSFD-YVTIGFGLRNVPDYLSALKEMHRVLKPGGMVVCLETSQPTLPLFKQIYSLYF 170
Query: 233 ---------LFPKEEEYIEWFQKAGFK 250
+F K +E EW Q++ F
Sbjct: 171 KFVMPIFGKMFAKSKEEYEWLQQSTFN 197
>sp|Q5HP74|UBIE_STAEQ Demethylmenaquinone methyltransferase OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=ubiE PE=3 SV=1
Length = 241
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 13/147 (8%)
Query: 116 RVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLP 173
+ +DV GT T+ + + V +K VT LD S + L KQK L+ ++ GDA +LP
Sbjct: 52 KALDVCCGTADWTIALSEAVGSKGQVTGLDFSENMLEVGKQKTASLENIQLVHGDAMNLP 111
Query: 174 FPTDYADRYVSAG-SIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWM 232
F + D YV+ G + PD +KE +RVLK GG + PT L + ++
Sbjct: 112 FDDNSFD-YVTIGFGLRNVPDYLSALKEMHRVLKPGGMVVCLETSQPTLPLFKQIYSLYF 170
Query: 233 ---------LFPKEEEYIEWFQKAGFK 250
+F K +E EW Q++ F
Sbjct: 171 KFVMPIFGKMFAKSKEEYEWLQQSTFN 197
>sp|B3QLI9|UBIE_CHLP8 Demethylmenaquinone methyltransferase OS=Chlorobaculum parvum
(strain NCIB 8327) GN=ubiE PE=3 SV=1
Length = 241
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED 171
+R +++DV GTG + K AK VT D SP LA A++K P E EG AE
Sbjct: 61 EREPKILDVATGTGDLAASMAKIPGAK-VTGYDLSPEMLAIARKKYPNIEFH--EGFAEK 117
Query: 172 LPFPTDYADRYVSAG-SIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYP 219
+PF D + VSAG + + D +G+KE +RVLK GG A +I P+ P
Sbjct: 118 MPF-ADQSFHVVSAGFGVRNFEDLAQGMKEFHRVLKPGGCAYIIEPMIP 165
>sp|A9ILA7|UBIE_BART1 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Bartonella tribocorum (strain CIP 105476 / IBS 506)
GN=ubiE PE=3 SV=1
Length = 260
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 75/176 (42%), Gaps = 37/176 (21%)
Query: 116 RVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKE------PLKECTIIEGD 168
+V+DV GGTG I+K K + T+LD + L+ KQ+ PL +E +
Sbjct: 75 KVLDVAGGTGDIAFRILKASRQKAHATVLDINGSMLSVGKQRAQKNGLAPL--IDFVEAN 132
Query: 169 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK-ACVIGPVYPTFWLSRFF 227
AE LPF D Y A I P + ++EA+RVLK GG+ C+ WL + +
Sbjct: 133 AEHLPFEDQSFDAYTIAFGIRNVPHIDQALREAFRVLKPGGRFLCLEFSNVEMPWLDKIY 192
Query: 228 ADVWML--------------------------FPKEEEYIEWFQKAGFKDVKLKRI 257
D+W FPK+ ++ ++AGF V + +
Sbjct: 193 -DLWSFHAIPKLGQFIANDGDAYRYLVESIRKFPKQNDFAHMIKQAGFSRVSYRNL 247
>sp|Q2KDB0|UBIE_RHIEC Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=ubiE
PE=3 SV=1
Length = 258
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 116 RVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECTIIEGDAE 170
+V+DV GGTG IV+ + + T+LD + L +A++K+ T +E +AE
Sbjct: 73 KVLDVAGGTGDIAFRIVEASGRQAHATVLDINGSMLGVGAERAEKKKLSGNLTFVEANAE 132
Query: 171 DLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214
+LPF D Y A I P + + EAYRVLK GG+ V+
Sbjct: 133 ELPFEAASFDAYTIAFGIRNVPRIDKALSEAYRVLKRGGRLLVL 176
>sp|Q6G1I2|UBIE_BARQU Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Bartonella quintana (strain Toulouse) GN=ubiE PE=3
SV=1
Length = 260
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 33/176 (18%)
Query: 114 NMRVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA---KAKQKEPLKECT-IIEGD 168
N +V+DV GGTG I+ K + T+LD + L+ K QK L T +E +
Sbjct: 73 NWKVLDVAGGTGDIAFRILNASRKKAHATVLDINSSMLSVGKKRAQKNGLAPLTDFVEAN 132
Query: 169 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK-AC---------VIGPVY 218
AE LPF D Y A I P + ++EA+RVLK GG+ C ++ +Y
Sbjct: 133 AEHLPFEDQSFDAYTIAFGIRNVPHINQALREAFRVLKPGGRFLCLEFSNVEMPLLNKIY 192
Query: 219 PTFW-------LSRFFADV-----WML-----FPKEEEYIEWFQKAGFKDVKLKRI 257
W L +F AD +++ FPK++++ AGF V + +
Sbjct: 193 D-LWSFHVIPKLGQFIADNGDAYRYLVESIRKFPKQDDFSHMLNHAGFSRVSYRNL 247
>sp|P96576|YDAC_BACSU Uncharacterized methyltransferase YdaC OS=Bacillus subtilis (strain
168) GN=ydaC PE=3 SV=1
Length = 181
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 8/150 (5%)
Query: 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL 172
R +++VG G G+ ++K ++ +D S L A ++ K +I+G E
Sbjct: 26 RGDSILEVGFGPGYCMQQMLKREKDVHLHGIDVSEAMLKLAARRVKPKGVRLIQGSIETF 85
Query: 173 PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWM 232
P P + D+ +S + W D +GIK+ YR LK GGKA + T A
Sbjct: 86 PLPASFYDKVISVNNYTIWNDQTKGIKQIYRALKPGGKAAI------TMQPREADASPEK 139
Query: 233 LFPKEEEYIEWFQKAGFK--DVKLKRIGPK 260
+ I F+ AGF+ D++ K I P+
Sbjct: 140 TKSFGRQMIADFKAAGFEDIDIQFKNIKPE 169
>sp|B5ZYK8|UBIE_RHILW Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304)
GN=ubiE PE=3 SV=1
Length = 258
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 116 RVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECTIIEGDAE 170
RV+DV GGTG IV+ + + T+LD + L +A++K+ T +E +AE
Sbjct: 73 RVLDVAGGTGDIAFRIVEASGRQAHATVLDINGSMLGVGAERAEKKKLSGNLTFVEANAE 132
Query: 171 DLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214
+LPF D Y A I P + EAYRVLK GG+ V+
Sbjct: 133 ELPFEPASFDAYTIAFGIRNVPRIDAALSEAYRVLKRGGRLLVL 176
>sp|Q6GGU0|UBIE_STAAR Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain MRSA252) GN=ubiE PE=3 SV=1
Length = 241
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 13/149 (8%)
Query: 113 RNMRVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEP-LKECTIIEGDAE 170
+ M+ +DV GTG T+ + K V + VT +D S + L K+K ++ ++ GDA
Sbjct: 49 KGMKALDVCCGTGDWTIALSKAVGSTGEVTGIDFSENMLEVGKEKTASMENVKLVHGDAM 108
Query: 171 DLPFPTDYADRYVSAG-SIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTF-----WLS 224
+LPF + D YV+ G + PD +KE RVLK GG + PT +
Sbjct: 109 ELPFEDNSFD-YVTIGFGLRNVPDYLVALKEMNRVLKPGGMVVCLETSQPTLPVFKQMYA 167
Query: 225 RFFADVW----MLFPKEEEYIEWFQKAGF 249
+F V LF K +E EW Q++ F
Sbjct: 168 LYFKFVMPIFGKLFAKSKEEYEWLQQSTF 196
>sp|Q1MME0|UBIE_RHIL3 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rhizobium leguminosarum bv. viciae (strain 3841)
GN=ubiE PE=3 SV=1
Length = 258
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 116 RVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECTIIEGDAE 170
+V+DV GGTG IV+ + + T+LD + L +A++K+ T +E +AE
Sbjct: 73 KVLDVAGGTGDIAFRIVEASGRQAHATVLDINGSMLGVGAERAEKKKLSGNLTFVEANAE 132
Query: 171 DLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214
+LPF D Y A I P + EAYRVLK GG+ V+
Sbjct: 133 ELPFEAGSFDAYTIAFGIRNVPRIDAALSEAYRVLKRGGRLLVL 176
>sp|Q8YDE4|UBIE_BRUME Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Brucella melitensis biotype 1 (strain 16M / ATCC
23456 / NCTC 10094) GN=ubiE PE=3 SV=1
Length = 269
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 33/170 (19%)
Query: 118 VDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECTIIEGDAEDL 172
+DV GGTG IV+ + +VTILD + L +A +K + +E +AE+L
Sbjct: 86 LDVAGGTGDIAFRIVEASGRQAHVTILDINGSMLGVGRERAIKKGLIDNLEFVEANAEEL 145
Query: 173 PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK-AC---------VIGPVYPTFW 222
PF + D Y A I P + + EAYRVLK GG+ C V+ VY W
Sbjct: 146 PFEDNSFDAYTIAFGIRNVPHIDKALSEAYRVLKPGGRFLCLEFSEVELPVLDKVYDE-W 204
Query: 223 LSR-----------------FFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255
R + + FPK++++ +KAGF+ V +
Sbjct: 205 SFRAIPRIGKMITGDADSYSYLVESIRKFPKQQDFAAMIEKAGFERVSYR 254
>sp|C0RMK3|UBIE_BRUMB Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Brucella melitensis biotype 2 (strain ATCC 23457)
GN=ubiE PE=3 SV=1
Length = 269
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 33/170 (19%)
Query: 118 VDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECTIIEGDAEDL 172
+DV GGTG IV+ + +VTILD + L +A +K + +E +AE+L
Sbjct: 86 LDVAGGTGDIAFRIVEASGRQAHVTILDINGSMLGVGRERAIKKGLIDNLEFVEANAEEL 145
Query: 173 PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK-AC---------VIGPVYPTFW 222
PF + D Y A I P + + EAYRVLK GG+ C V+ VY W
Sbjct: 146 PFEDNSFDAYTIAFGIRNVPHIDKALSEAYRVLKPGGRFLCLEFSEVELPVLDKVYDE-W 204
Query: 223 LSR-----------------FFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255
R + + FPK++++ +KAGF+ V +
Sbjct: 205 SFRAIPRIGKMITGDADSYSYLVESIRKFPKQQDFAAMIEKAGFERVSYR 254
>sp|Q576Q0|UBIE_BRUAB Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Brucella abortus biovar 1 (strain 9-941) GN=ubiE PE=3
SV=1
Length = 269
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 33/170 (19%)
Query: 118 VDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECTIIEGDAEDL 172
+DV GGTG IV+ + +VTILD + L +A +K + +E +AE+L
Sbjct: 86 LDVAGGTGDIAFRIVEASGRQAHVTILDINGSMLGVGRERAIKKGLIDNLEFVEANAEEL 145
Query: 173 PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK-AC---------VIGPVYPTFW 222
PF + D Y A I P + + EAYRVLK GG+ C V+ VY W
Sbjct: 146 PFEDNSFDAYTIAFGIRNVPHIDKALSEAYRVLKPGGRFLCLEFSEVELPVLDKVYDE-W 204
Query: 223 LSR-----------------FFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255
R + + FPK++++ +KAGF+ V +
Sbjct: 205 SFRAIPRIGKMITGDADSYSYLVESIRKFPKQQDFAAMIEKAGFERVSYR 254
>sp|Q2YJM4|UBIE_BRUA2 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Brucella abortus (strain 2308) GN=ubiE PE=3 SV=1
Length = 269
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 33/170 (19%)
Query: 118 VDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECTIIEGDAEDL 172
+DV GGTG IV+ + +VTILD + L +A +K + +E +AE+L
Sbjct: 86 LDVAGGTGDIAFRIVEASGRQAHVTILDINGSMLGVGRERAIKKGLIDNLEFVEANAEEL 145
Query: 173 PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK-AC---------VIGPVYPTFW 222
PF + D Y A I P + + EAYRVLK GG+ C V+ VY W
Sbjct: 146 PFEDNSFDAYTIAFGIRNVPHIDKALSEAYRVLKPGGRFLCLEFSEVELPVLDKVYDE-W 204
Query: 223 LSR-----------------FFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255
R + + FPK++++ +KAGF+ V +
Sbjct: 205 SFRAIPRIGKMITGDADSYSYLVESIRKFPKQQDFAAMIEKAGFERVSYR 254
>sp|B2SC50|UBIE_BRUA1 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Brucella abortus (strain S19) GN=ubiE PE=3 SV=1
Length = 269
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 33/170 (19%)
Query: 118 VDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECTIIEGDAEDL 172
+DV GGTG IV+ + +VTILD + L +A +K + +E +AE+L
Sbjct: 86 LDVAGGTGDIAFRIVEASGRQAHVTILDINGSMLGVGRERAIKKGLIDNLEFVEANAEEL 145
Query: 173 PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK-AC---------VIGPVYPTFW 222
PF + D Y A I P + + EAYRVLK GG+ C V+ VY W
Sbjct: 146 PFEDNSFDAYTIAFGIRNVPHIDKALSEAYRVLKPGGRFLCLEFSEVELPVLDKVYDE-W 204
Query: 223 LSR-----------------FFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255
R + + FPK++++ +KAGF+ V +
Sbjct: 205 SFRAIPRIGKMITGDADSYSYLVESIRKFPKQQDFAAMIEKAGFERVSYR 254
>sp|A8GXR2|UBIE_RICB8 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rickettsia bellii (strain OSU 85-389) GN=ubiE PE=3
SV=1
Length = 248
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 34/179 (18%)
Query: 114 NMRVVDVGGGTGFTTLGIVKHVDAK----NVTILDQSPHQLAKAKQK----EPLKECTII 165
N ++DV G+G L + K + ++T+ D + L +AK+K +
Sbjct: 58 NSNILDVASGSGDIALKLAKKAKDRGSNISLTLSDINEEMLRQAKKKSIDLNLFQNLKFT 117
Query: 166 EGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK-ACVIGPVYPTFWLS 224
AE+LPFP + D Y A I PD + +KEAYRVLK GK C+ L
Sbjct: 118 VASAEELPFPDNSFDYYTIAFGIRNVPDINKALKEAYRVLKPMGKFICLEFSKVKESLLQ 177
Query: 225 RFF-------------------------ADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258
F+ + LFP ++E+ ++AGF+++ K +
Sbjct: 178 DFYKFYSFNVIPKIGKIITGNKEAYDYLVESIDLFPSQDEFRIMIKEAGFEEINYKNLS 236
>sp|Q1RJY5|UBIE_RICBR Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rickettsia bellii (strain RML369-C) GN=ubiE PE=3 SV=1
Length = 248
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 34/179 (18%)
Query: 114 NMRVVDVGGGTGFTTLGIVKHVDAK----NVTILDQSPHQLAKAKQK----EPLKECTII 165
N ++DV G+G L + K + ++T+ D + L +AK+K +
Sbjct: 58 NSNILDVASGSGDIALKLAKKAKDRGSNISLTLSDINEEMLRQAKKKSIDLNLFQNLKFT 117
Query: 166 EGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK-ACVIGPVYPTFWLS 224
AE+LPFP + D Y A I PD + +KEAYRVLK GK C+ L
Sbjct: 118 VASAEELPFPDNSFDYYTIAFGIRNVPDINKALKEAYRVLKPMGKFICLEFSKVKESLLQ 177
Query: 225 RFF-------------------------ADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258
F+ + LFP ++E+ ++AGF+++ K +
Sbjct: 178 DFYKFYSFNVIPKIGQIITGNKEAYDYLVESIDLFPSQDEFRIMIKEAGFEEINYKNLS 236
>sp|B9JZF4|UBIE_AGRVS Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Agrobacterium vitis (strain S4 / ATCC BAA-846)
GN=ubiE PE=3 SV=1
Length = 258
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 68/172 (39%), Gaps = 31/172 (18%)
Query: 112 DRNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLA----KAKQKEPLKECTIIE 166
D +V+DV GGTG I++ + T+LD + L +A++K T +E
Sbjct: 69 DAGYKVLDVAGGTGDIAFRIIEASRRLAHATVLDINGSMLGVGQERAQKKGLSDNLTFVE 128
Query: 167 GDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRF 226
+AE LPF + D Y A I P + EAYRVLK GG+ V+ L
Sbjct: 129 ANAEALPFEANQFDAYTIAFGIRNVPRIDVALSEAYRVLKRGGRLLVLEFSEVQMPLLDR 188
Query: 227 FADVWML--------------------------FPKEEEYIEWFQKAGFKDV 252
F D W FP ++++ KAGF V
Sbjct: 189 FYDQWSFKAIPRFGKMITGEAEPYQYLVESIRKFPNQQDFAAMITKAGFSKV 240
>sp|A9MCZ2|UBIE_BRUC2 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Brucella canis (strain ATCC 23365 / NCTC 10854)
GN=ubiE PE=3 SV=1
Length = 269
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 33/170 (19%)
Query: 118 VDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECTIIEGDAEDL 172
+DV GGTG IV+ + +VTILD + L +A +K + +E +AE+L
Sbjct: 86 LDVAGGTGDIAFRIVEVSGRQAHVTILDINGSMLGVGRERAIKKGLIDNLEFVEANAEEL 145
Query: 173 PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK-AC---------VIGPVYPTFW 222
PF + D Y A I P + + EAYRVLK GG+ C V+ VY W
Sbjct: 146 PFEDNSFDAYTIAFGIRNVPHIDKALSEAYRVLKPGGRFLCLEFSEVELPVLDKVYDE-W 204
Query: 223 LSR-----------------FFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255
R + + FPK++++ +KAGF+ V +
Sbjct: 205 SFRAIPRIGKMITGDADSYSYLVESIRKFPKQQDFAAMIEKAGFERVSYR 254
>sp|Q8FUZ3|UBIE_BRUSU Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Brucella suis biovar 1 (strain 1330) GN=ubiE PE=3
SV=1
Length = 269
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 33/170 (19%)
Query: 118 VDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECTIIEGDAEDL 172
+DV GGTG IV+ + +VTILD + L +A +K + +E +AE+L
Sbjct: 86 LDVAGGTGDIAFRIVEVSGRQAHVTILDINGSMLGVGRERAIKKGLIDNLEFVEANAEEL 145
Query: 173 PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK-AC---------VIGPVYPTFW 222
PF + D Y A I P + + EAYRVLK GG+ C V+ VY W
Sbjct: 146 PFEDNSFDAYTIAFGIRNVPHIDKALSEAYRVLKPGGRFLCLEFSEVELPVLDKVYDE-W 204
Query: 223 LSR-----------------FFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255
R + + FPK++++ +KAGF+ V +
Sbjct: 205 SFRAIPRIGKMITGDADSYSYLVESIRKFPKQQDFAAMIEKAGFERVSYR 254
>sp|B3PZ92|UBIE_RHIE6 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rhizobium etli (strain CIAT 652) GN=ubiE PE=3 SV=1
Length = 258
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 116 RVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLA----KAKQKEPLKECTIIEGDAE 170
+V+DV GGTG IV+ + + T+LD + L +A++K+ T +E +AE
Sbjct: 73 KVLDVAGGTGDIAFRIVEASGRQAHATVLDINGSMLGVGAERAEKKKLSANLTFVEANAE 132
Query: 171 DLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214
+LPF D Y A I P + EAYRVLK GG+ V+
Sbjct: 133 ELPFEAASFDAYTIAFGIRNVPRIDVALAEAYRVLKRGGRLLVL 176
>sp|P34666|COQ5_CAEEL 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
OS=Caenorhabditis elegans GN=coq-5 PE=3 SV=2
Length = 285
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 77/176 (43%), Gaps = 33/176 (18%)
Query: 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTI-------IE 166
N + +D+ GGTG I++H VT+ D + L K K KE I +
Sbjct: 96 NAKCLDMAGGTGDIAFRILRHSPTAKVTVSDINQPMLDVGK-KRAEKERDIQPSRAEWVC 154
Query: 167 GDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACV---------IGPV 217
+AE +PF ++ D + + I P++ ++EA+RVLK GG+ + + P+
Sbjct: 155 ANAEQMPFESNTYDLFTMSFGIRNCTHPEKVVREAFRVLKPGGQLAILEFSEVNSALKPI 214
Query: 218 YPTFWLS----------------RFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257
Y + + ++ + FP ++E+ ++ GF +V+ + +
Sbjct: 215 YDAYSFNVIPVLGEILASDRASYQYLVESIRKFPNQDEFARIIREEGFSNVRYENL 270
>sp|A8F2G9|UBIE_RICM5 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rickettsia massiliae (strain Mtu5) GN=ubiE PE=3 SV=1
Length = 248
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 34/179 (18%)
Query: 114 NMRVVDVGGGTGFTTLGIVK----HVDAKNVTILDQSPHQLAKAKQK----EPLKECTII 165
N ++DV G+G L + K V+ ++T+ D + L +AK+K +
Sbjct: 58 NSHILDVASGSGDIALKLAKKARDRVNNISLTLSDINEEMLKQAKKKAIDLNLFQNLKFT 117
Query: 166 EGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK-ACV---------IG 215
AE+LPFP D D Y A I PD + +KEA RVLK GK C+ I
Sbjct: 118 VASAEELPFPDDSFDYYTIAFGIRNVPDINKALKEACRVLKPMGKFICLEFSKVKEGYIK 177
Query: 216 PVYPTFWLS----------------RFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258
Y + + + + LFP ++E+ + AGF++V K +
Sbjct: 178 DFYKFYSFNIIPSIGQMIVGNKEAYEYLVESIELFPSQDEFRIMIKDAGFEEVGYKNLS 236
>sp|A8GT99|UBIE_RICRS Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rickettsia rickettsii (strain Sheila Smith) GN=ubiE
PE=3 SV=1
Length = 248
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 34/179 (18%)
Query: 114 NMRVVDVGGGTGFTTLGIVK----HVDAKNVTILDQSPHQLAKAKQK----EPLKECTII 165
N ++DV G+G L + K V+ ++T+ D + L +AK+K +
Sbjct: 58 NSHILDVASGSGDIALKLAKKARDRVNNISLTLSDINEEMLKQAKKKAIDLNLFQNLKFT 117
Query: 166 EGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK-ACV---------IG 215
AE+LPFP D D Y A I PD + +KEA RVLK GK C+ I
Sbjct: 118 VASAEELPFPDDSFDYYTIAFGIRNVPDINKALKEACRVLKPMGKFICLEFSKVKEGYIK 177
Query: 216 PVYPTFWLS----------------RFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258
Y + + + + LFP ++E+ + AGF++V K +
Sbjct: 178 DFYKFYSFNIIPSIGQMIAGNKEAYEYLVESIDLFPSQDEFRIMIKDAGFEEVGYKNLS 236
>sp|B0BUT9|UBIE_RICRO Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rickettsia rickettsii (strain Iowa) GN=ubiE PE=3 SV=1
Length = 248
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 34/179 (18%)
Query: 114 NMRVVDVGGGTGFTTLGIVK----HVDAKNVTILDQSPHQLAKAKQK----EPLKECTII 165
N ++DV G+G L + K V+ ++T+ D + L +AK+K +
Sbjct: 58 NSHILDVASGSGDIALKLAKKARDRVNNISLTLSDINEEMLKQAKKKAIDLNLFQNLKFT 117
Query: 166 EGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK-ACV---------IG 215
AE+LPFP D D Y A I PD + +KEA RVLK GK C+ I
Sbjct: 118 VASAEELPFPDDSFDYYTIAFGIRNVPDINKALKEACRVLKPMGKFICLEFSKVKEGYIK 177
Query: 216 PVYPTFWLS----------------RFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258
Y + + + + LFP ++E+ + AGF++V K +
Sbjct: 178 DFYKFYSFNIIPSIGQMIAGNKEAYEYLVESIDLFPSQDEFRIMIKDAGFEEVGYKNLS 236
>sp|Q92GT5|UBIE_RICCN Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7)
GN=ubiE PE=3 SV=1
Length = 248
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 34/179 (18%)
Query: 114 NMRVVDVGGGTGFTTLGIVK----HVDAKNVTILDQSPHQLAKAKQK----EPLKECTII 165
N ++DV G+G L + K V+ ++T+ D + L +AK+K +
Sbjct: 58 NSHILDVASGSGDIALKLAKKARDRVNNISLTLSDINEEMLKQAKKKAIDLNLFQNLKFT 117
Query: 166 EGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK-ACV---------IG 215
AE+LPFP D D Y A I PD + +KEA RVLK GK C+ I
Sbjct: 118 VASAEELPFPDDSFDYYTIAFGIRNVPDINKALKEACRVLKPMGKFICLEFSKVKEGYIK 177
Query: 216 PVYPTFWLS----------------RFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258
Y + + + + LFP ++E+ + AGF++V K +
Sbjct: 178 DFYKFYSFNIIPSIGQMIAGNKEAYEYLVESIDLFPSQDEFRIMIKDAGFEEVGYKNLS 236
>sp|Q68W57|UBIE_RICTY Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington)
GN=ubiE PE=3 SV=1
Length = 248
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 34/179 (18%)
Query: 114 NMRVVDVGGGTGFTTLGIVKHVDAK--NVTIL--DQSPHQLAKAKQK----EPLKECTII 165
N ++DV G+G L + K A+ N++++ D + L AK+K + I
Sbjct: 58 NSNILDVASGSGDIALQLAKKAKARGNNISLILSDINEEMLNNAKKKSIDLNLFQNMKFI 117
Query: 166 EGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK-AC---------VIG 215
+AE+LPF + D Y A I PD + +KEAYRVLK GK C ++
Sbjct: 118 VANAEELPFLDNSFDYYTIAFGIRNVPDINKALKEAYRVLKPMGKFICLEFSKVKEGILK 177
Query: 216 PVYPTFWLS----------------RFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258
Y + + + + LFP ++++ + +GF++V K +
Sbjct: 178 DFYKFYSFTIIPSIGQIIARNKEAYEYLVESIALFPSQDDFRIMIKASGFEEVHYKNLS 236
>sp|C3PLF4|UBIE_RICAE Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rickettsia africae (strain ESF-5) GN=ubiE PE=3 SV=1
Length = 248
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 34/179 (18%)
Query: 114 NMRVVDVGGGTGFTTLGIVK----HVDAKNVTILDQSPHQLAKAKQK----EPLKECTII 165
N ++DV G+G L + K V+ ++T+ D + L +AK+K +
Sbjct: 58 NSHILDVASGSGDIALKLAKKARDRVNNISLTLSDINEEMLKQAKKKAIDLNLFQNLKFT 117
Query: 166 EGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK-ACV---------IG 215
AE+LPFP D D Y A I PD + +KEA RVLK GK C+ I
Sbjct: 118 VASAEELPFPDDSFDYYTIAFGIRNVPDINKALKEACRVLKPMGKFICLEFSKVKEGYIK 177
Query: 216 PVYPTFWLS----------------RFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258
Y + + + + LFP ++E+ + AGF++V K +
Sbjct: 178 DFYKFYSFNIIPSIGQMIAGNKEAYEYLVESIDLFPSQDEFRIMIKDAGFEEVGYKNLS 236
>sp|Q9VYF8|COQ5_DROME 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
OS=Drosophila melanogaster GN=coq5 PE=1 SV=1
Length = 301
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 44/187 (23%)
Query: 115 MRVVDVGGGTGFTTLGIVKHVDAK--------NVTILDQSPHQLAKAKQK--------EP 158
MR++D+ GGTG T +++++ + +VT+ D + H L +++ +
Sbjct: 102 MRLLDMAGGTGDITFRYLRYLNNQPNPQQRPSHVTVSDINQHMLNVGEERAKRLGLTTDQ 161
Query: 159 LKECTII--EGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK-ACV-- 213
L CT+ DAE LPFP Y A I + + EAYRVL+ GG+ C+
Sbjct: 162 LSNCTVAWQCADAEKLPFPDASFTAYTIAFGIRNCTHVDKVLSEAYRVLQPGGRFMCLEF 221
Query: 214 ----------------------IGPVYPTFWLS-RFFADVWMLFPKEEEYIEWFQKAGFK 250
+G + W + ++ + FPK+E++ + ++AGF
Sbjct: 222 SHLTNETMQWLYDQYSFQVIPPMGQLLAGQWQAYQYLVESIRRFPKQEQFKQMIEQAGFD 281
Query: 251 DVKLKRI 257
V + +
Sbjct: 282 QVSYENL 288
>sp|O66128|UBIE_MICLU Demethylmenaquinone methyltransferase OS=Micrococcus luteus GN=ubiE
PE=3 SV=1
Length = 246
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 13/147 (8%)
Query: 116 RVVDVGGGTGFTTLGIVKHVDAKNVTI-LDQSPHQLAKAKQK-EPLKECTIIEGDAEDLP 173
+ +DV GTG T+ + + V I LD S + L+ A+ K ++ +I G+A +LP
Sbjct: 61 KALDVCCGTGDWTIQMAQAVGKNGHVIGLDFSENMLSVAQGKTNHIQNIELIHGNAMELP 120
Query: 174 FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSR-----FFA 228
F + D + PD ++G++E YRVLK GG V+ +PT + + +F
Sbjct: 121 FEDNIFDYTTIGFGLRNLPDYKKGLEEMYRVLKPGGMIVVLETSHPTMPVFKQGYKLYFK 180
Query: 229 DVWMLFPK-----EEEYIEWFQKAGFK 250
V LF K +EY W Q++ F+
Sbjct: 181 YVMPLFGKVFAKSMKEY-SWLQQSAFE 206
>sp|Q9ZCP3|UBIE_RICPR Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rickettsia prowazekii (strain Madrid E) GN=ubiE PE=3
SV=2
Length = 248
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 34/179 (18%)
Query: 114 NMRVVDVGGGTGFTTLGIVKHVDAK--NVTIL--DQSPHQLAKAKQK----EPLKECTII 165
N ++DV G+G L + K + N++++ D + L AK+K + I
Sbjct: 58 NSNILDVASGSGDIALKLAKKAKDRGNNISLILSDINEEMLNNAKKKSIDLNLFQNIKFI 117
Query: 166 EGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK-AC---------VIG 215
+AE+LPF + D Y A I PD + +KEAYRVLK GK C ++
Sbjct: 118 VANAEELPFSDNSFDYYTIAFGIRNVPDINKALKEAYRVLKPMGKFVCLEFSKVKEGILK 177
Query: 216 PVYPTFWLS----------------RFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258
Y + + + + LFP ++++ +++GF++V K +
Sbjct: 178 DFYKFYSFNIIPSIGQIIAGNKEAYEYLVESIALFPSQDDFRIMIKESGFEEVHYKNLS 236
>sp|C6DI77|UBIE_PECCP Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Pectobacterium carotovorum subsp. carotovorum (strain
PC1) GN=ubiE PE=3 SV=1
Length = 251
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 113 RNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQL----AKAKQKEPLKECTIIEG 167
RN RV+D+ GGTG T + V + V + D + L K + K + + ++
Sbjct: 63 RNQRVLDLAGGTGDLTAKFSRMVGEGGEVILADINASMLKVGREKLRNKGIIDNISYVQA 122
Query: 168 DAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214
+AE LPFP D+ D + + D + ++ YRVLK GG+ V+
Sbjct: 123 NAEALPFPDDFFDCITISFGLRNVTDKNKALRSMYRVLKPGGRLLVL 169
>sp|Q7MQ33|UBIE_VIBVY Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Vibrio vulnificus (strain YJ016) GN=ubiE PE=3 SV=1
Length = 260
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 9/134 (6%)
Query: 116 RVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTII------EGDA 169
RV+D+GGGTG T + V K IL + + ++ L++ I+ + +A
Sbjct: 75 RVLDLGGGTGDLTAKFSRIVGEKGHVILADINNSMLNVG-RDKLRDSGIVGNVHYVQANA 133
Query: 170 EDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFW-LSRFF- 227
E+LPFP DY D + + D + ++ +RVLK GG+ V+ P F LS+ +
Sbjct: 134 EELPFPDDYFDIITISFCLRNVTDKDKALRSMFRVLKPGGRLLVLEFSKPVFDPLSKVYD 193
Query: 228 ADVWMLFPKEEEYI 241
A + L PK E +
Sbjct: 194 AYSFHLLPKMGELV 207
>sp|Q8DDP9|UBIE_VIBVU Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Vibrio vulnificus (strain CMCP6) GN=ubiE PE=3 SV=1
Length = 260
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 9/134 (6%)
Query: 116 RVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTII------EGDA 169
RV+D+GGGTG T + V K IL + + ++ L++ I+ + +A
Sbjct: 75 RVLDLGGGTGDLTAKFSRIVGEKGHVILADINNSMLNVG-RDKLRDSGIVGNVHYVQANA 133
Query: 170 EDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFW-LSRFF- 227
E+LPFP DY D + + D + ++ +RVLK GG+ V+ P F LS+ +
Sbjct: 134 EELPFPDDYFDIITISFCLRNVTDKDKALRSMFRVLKPGGRLLVLEFSKPVFDPLSKVYD 193
Query: 228 ADVWMLFPKEEEYI 241
A + L PK E +
Sbjct: 194 AYSFHLLPKMGELV 207
>sp|Q4UMW4|UBIE_RICFE Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
GN=ubiE PE=3 SV=1
Length = 248
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 34/179 (18%)
Query: 114 NMRVVDVGGGTGFTTLGIVKHV-DAKN---VTILDQSPHQLAKAKQK----EPLKECTII 165
N ++DV G+G L + K D N +T+ D + L AK+K +
Sbjct: 58 NSHILDVASGSGDIALKLAKKARDRGNNIALTLSDINEEMLKNAKKKAIDLNLFQNLKFT 117
Query: 166 EGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIG---------- 215
AE+LPF + D Y A I PD + +KEAYRVLK GK +
Sbjct: 118 VASAEELPFSDNSFDYYTIAFGIRNVPDINKALKEAYRVLKPMGKFICLEFSKVKESYFK 177
Query: 216 --------PVYPTFWLS--------RFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258
+ PT + + + LFP ++E+ ++AGF++V K +
Sbjct: 178 DFYKFYSFSIIPTIGQAITGNKEAYEYLVESIELFPSQDEFRIMLKEAGFEEVSYKNLS 236
>sp|Q81ZZ8|UBIE_NITEU Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC
14298) GN=ubiE PE=3 SV=1
Length = 244
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 28/166 (16%)
Query: 116 RVVDVGGGTG-FTTLGIVKHVDAKNV--TILDQSPHQLAKAKQKEPLKECTIIEGDAEDL 172
+V+D+ GGT T L + K V T ++ S + + + K + + DAE L
Sbjct: 62 KVLDIAGGTADLTRLFLEKTGSTGEVWLTDINNSMLSIGRDRMLNDGKSVPVAQCDAEKL 121
Query: 173 PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACV---------IGPVYPTFWL 223
PFP +Y DR A + ++E +RVL GG V + P+Y T+
Sbjct: 122 PFPDNYFDRVCVAFGLRNMTHKDAALREMWRVLSPGGSLIVLEFSKVWKPLQPLYDTYSF 181
Query: 224 S----------------RFFADVWMLFPKEEEYIEWFQKAGFKDVK 253
R+ A+ + P +EE + Q+AGF+ V+
Sbjct: 182 KALPFMGKIVARDDTSYRYLAESIRMHPSQEELKQLMQQAGFERVE 227
>sp|Q6DAQ7|UBIE_ERWCT Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Erwinia carotovora subsp. atroseptica (strain SCRI
1043 / ATCC BAA-672) GN=ubiE PE=3 SV=1
Length = 251
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 113 RNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQL----AKAKQKEPLKECTIIEG 167
RN RV+D+ GGTG T + V + V + D + L K + K + ++
Sbjct: 63 RNQRVLDLAGGTGDLTAKFSRMVGEGGEVILADINASMLKVGREKLRNKGIIDNINYVQA 122
Query: 168 DAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214
+AE LPFP D+ D + + D + ++ YRVLK GG+ V+
Sbjct: 123 NAEALPFPDDFFDCITISFGLRNVTDKNKALRSMYRVLKPGGRLLVL 169
>sp|Q87TH4|UBIE_VIBPA Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD
2210633) GN=ubiE PE=3 SV=1
Length = 259
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 35/171 (20%)
Query: 116 RVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECTII------EGD 168
R++D+GGGTG T + V D +V + D + L + K L++ I+ + +
Sbjct: 74 RILDLGGGTGDLTAKFSRIVGDQGHVVLADINNSMLNVGRDK--LRDNGIVGNVHYVQAN 131
Query: 169 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACV----------IGPVY 218
AE+LPFP DY D + + D + ++ +RVLK GG+ V + VY
Sbjct: 132 AEELPFPDDYFDVITISFCLRNVTDKDKALRSMFRVLKPGGRLLVLEFSKPVLEPLSKVY 191
Query: 219 PTFWLS----------------RFFADVWMLFPKEEEYIEWFQKAGFKDVK 253
+ R+ A+ + P +E Q AGF++ K
Sbjct: 192 DAYSFHLLPKMGELVANDAESYRYLAESIRMHPDQETLEGMMQDAGFENTK 242
>sp|C0R2Q3|UBIE_WOLWR Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi)
GN=ubiE PE=3 SV=1
Length = 238
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 111 FDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTI----IE 166
F +N +V+DV GGTG + IV+ + VT+ D + + L++ + K + I +
Sbjct: 49 FTKNSKVLDVAGGTGDIAIRIVRKEPSAKVTVCDINQNMLSRGRDK-AINSNQINFDWVC 107
Query: 167 GDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRF 226
+AE LPF D A I D ++ + EA+RVLK GK + P + +
Sbjct: 108 ANAESLPFEDSEFDYCTIAFGIRNVSDRKKALNEAHRVLKPHGKFICL-EFAPMHYQNEI 166
Query: 227 FADVWMLFP 235
F ++ L+
Sbjct: 167 FTKLYDLYS 175
>sp|A8GPI0|UBIE_RICAH Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Rickettsia akari (strain Hartford) GN=ubiE PE=3 SV=1
Length = 248
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 74/178 (41%), Gaps = 34/178 (19%)
Query: 114 NMRVVDVGGGTGFTTLGIVKHV-DAKN---VTILDQSPHQLAKAKQK----EPLKECTII 165
N ++DV G+G L + K D N +T+ D + L AK+K +
Sbjct: 58 NSHILDVASGSGDIALKLAKKARDRGNNIALTLSDINEEMLKNAKKKTIDLNLFQNLKFT 117
Query: 166 EGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK-ACV---------IG 215
AE+LP+P + D Y A I PD + +KEAYRVLK GK C+
Sbjct: 118 VASAEELPYPDNSFDYYTIAFGIRNVPDINKALKEAYRVLKPMGKFICLEFSKVKESYFK 177
Query: 216 PVYPTFWLS----------------RFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257
Y + S + + LFP ++E+ ++AGF++V K +
Sbjct: 178 DFYKFYSFSIIPTIGQVITGNKEAYEYLVESIELFPSQDEFRIMIKEAGFEEVGYKNL 235
>sp|Q4L6H3|UBIE_STAHJ Demethylmenaquinone methyltransferase OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=ubiE PE=3 SV=1
Length = 239
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 13/146 (8%)
Query: 116 RVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQK-EPLKECTIIEGDAEDLP 173
+ +DV GT T+ + K V A VT LD S + L K+K + + ++ GDA +LP
Sbjct: 52 KALDVCCGTADWTIALSKAVGAHGEVTGLDFSENMLEVGKEKTKHMNNIHLVHGDAMNLP 111
Query: 174 FPTDYADRYVSAG-SIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWM 232
F + D YV+ G + PD +KE RVLK GG + PT + + ++
Sbjct: 112 FEDNSFD-YVTIGFGLRNVPDYLVALKEMNRVLKPGGMIVCLETSQPTMPVFKQVYKLYF 170
Query: 233 ---------LFPKEEEYIEWFQKAGF 249
LF K +E EW Q++ F
Sbjct: 171 KFVMPVFGKLFAKSKEEYEWLQQSTF 196
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,944,065
Number of Sequences: 539616
Number of extensions: 6346786
Number of successful extensions: 16266
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 265
Number of HSP's that attempted gapping in prelim test: 15581
Number of HSP's gapped (non-prelim): 695
length of query: 340
length of database: 191,569,459
effective HSP length: 118
effective length of query: 222
effective length of database: 127,894,771
effective search space: 28392639162
effective search space used: 28392639162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)