Query 019479
Match_columns 340
No_of_seqs 392 out of 3640
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 09:48:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019479.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019479hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02490 MPBQ/MSBQ methyltrans 100.0 3E-51 6.6E-56 371.6 28.8 340 1-340 1-340 (340)
2 COG2226 UbiE Methylase involve 99.9 5.8E-25 1.3E-29 189.3 19.7 181 76-257 13-225 (238)
3 KOG1540 Ubiquinone biosynthesi 99.9 8.5E-24 1.8E-28 178.5 19.9 227 20-253 11-278 (296)
4 PF01209 Ubie_methyltran: ubiE 99.9 5.2E-25 1.1E-29 191.7 12.4 177 77-258 10-222 (233)
5 PLN02233 ubiquinone biosynthes 99.9 3.7E-23 8.1E-28 183.9 20.9 185 73-258 32-250 (261)
6 PLN02244 tocopherol O-methyltr 99.9 3.1E-21 6.6E-26 178.0 24.3 160 100-260 101-282 (340)
7 TIGR02752 MenG_heptapren 2-hep 99.9 4.9E-21 1.1E-25 167.9 20.9 181 77-258 8-220 (231)
8 PTZ00098 phosphoethanolamine N 99.9 1.5E-20 3.2E-25 167.5 17.8 160 101-262 41-208 (263)
9 PLN02396 hexaprenyldihydroxybe 99.9 6.1E-21 1.3E-25 173.2 15.0 144 113-258 131-291 (322)
10 PRK14103 trans-aconitate 2-met 99.8 1.1E-19 2.3E-24 161.7 18.2 147 103-255 20-183 (255)
11 COG2227 UbiG 2-polyprenyl-3-me 99.8 2.7E-20 5.8E-25 157.6 12.8 144 113-258 59-217 (243)
12 smart00828 PKS_MT Methyltransf 99.8 2.4E-20 5.2E-25 162.7 12.0 146 115-262 1-150 (224)
13 PRK11036 putative S-adenosyl-L 99.8 1E-19 2.3E-24 161.7 15.9 144 112-257 43-208 (255)
14 PRK00216 ubiE ubiquinone/menaq 99.8 8E-19 1.7E-23 154.4 20.9 158 102-260 41-229 (239)
15 PF08241 Methyltransf_11: Meth 99.8 6.4E-20 1.4E-24 137.4 10.8 95 118-213 1-95 (95)
16 PRK05785 hypothetical protein; 99.8 4.3E-19 9.3E-24 154.5 17.0 171 76-258 11-213 (226)
17 PLN02336 phosphoethanolamine N 99.8 5.3E-19 1.2E-23 171.0 18.4 157 104-262 258-420 (475)
18 PF13489 Methyltransf_23: Meth 99.8 9E-20 2E-24 150.5 11.1 133 112-253 21-160 (161)
19 PRK11873 arsM arsenite S-adeno 99.8 2.2E-18 4.7E-23 154.8 20.3 147 112-258 76-232 (272)
20 PF13847 Methyltransf_31: Meth 99.8 2.6E-19 5.6E-24 146.7 12.3 136 112-248 2-152 (152)
21 PRK15068 tRNA mo(5)U34 methylt 99.8 1.2E-18 2.5E-23 159.3 17.8 146 113-260 122-278 (322)
22 PRK08317 hypothetical protein; 99.8 3.9E-18 8.5E-23 150.0 19.0 159 99-258 6-178 (241)
23 PRK15451 tRNA cmo(5)U34 methyl 99.8 7.6E-19 1.6E-23 155.3 13.4 141 112-254 55-228 (247)
24 TIGR00452 methyltransferase, p 99.8 1.8E-18 3.9E-23 156.4 15.9 164 94-260 102-277 (314)
25 PRK10258 biotin biosynthesis p 99.8 1E-17 2.2E-22 148.7 18.6 147 100-251 30-182 (251)
26 TIGR02072 BioC biotin biosynth 99.8 7.2E-18 1.6E-22 148.3 16.7 143 113-257 34-177 (240)
27 KOG1270 Methyltransferases [Co 99.8 7E-19 1.5E-23 149.9 9.5 139 114-257 90-250 (282)
28 TIGR01934 MenG_MenH_UbiE ubiqu 99.8 1.7E-17 3.8E-22 144.3 18.6 147 113-259 39-213 (223)
29 PF02353 CMAS: Mycolic acid cy 99.8 4.1E-18 8.8E-23 151.7 14.6 162 101-268 51-229 (273)
30 TIGR00740 methyltransferase, p 99.8 4.1E-18 8.8E-23 150.1 13.8 140 112-253 52-224 (239)
31 PRK01683 trans-aconitate 2-met 99.8 3.1E-17 6.7E-22 146.2 19.2 146 102-251 21-182 (258)
32 PF12847 Methyltransf_18: Meth 99.8 2.2E-18 4.7E-23 133.5 9.5 102 113-215 1-111 (112)
33 PRK11207 tellurite resistance 99.8 1.2E-17 2.6E-22 142.6 14.2 137 113-257 30-171 (197)
34 COG2230 Cfa Cyclopropane fatty 99.7 4.6E-17 9.9E-22 142.9 15.6 162 102-268 62-235 (283)
35 TIGR02716 C20_methyl_CrtF C-20 99.7 7.6E-17 1.7E-21 147.2 17.6 141 112-255 148-305 (306)
36 COG4106 Tam Trans-aconitate me 99.7 7.2E-17 1.6E-21 133.5 14.3 146 102-251 20-181 (257)
37 PF08003 Methyltransf_9: Prote 99.7 3.8E-17 8.1E-22 143.5 13.2 146 113-260 115-271 (315)
38 PRK06202 hypothetical protein; 99.7 7.5E-17 1.6E-21 141.4 14.8 144 112-258 59-224 (232)
39 PRK00107 gidB 16S rRNA methylt 99.7 3.4E-16 7.4E-21 131.7 16.8 126 112-259 44-172 (187)
40 KOG4300 Predicted methyltransf 99.7 7.3E-17 1.6E-21 132.5 12.0 145 113-258 76-234 (252)
41 TIGR00477 tehB tellurite resis 99.7 4.7E-17 1E-21 138.7 10.5 138 113-258 30-171 (195)
42 PLN02585 magnesium protoporphy 99.7 5.2E-16 1.1E-20 140.7 16.8 143 113-261 144-304 (315)
43 PRK05134 bifunctional 3-demeth 99.7 1.2E-15 2.6E-20 133.9 18.4 145 112-258 47-207 (233)
44 TIGR00138 gidB 16S rRNA methyl 99.7 8E-16 1.7E-20 129.2 15.2 125 113-259 42-172 (181)
45 PRK08287 cobalt-precorrin-6Y C 99.7 3.6E-15 7.8E-20 126.4 18.3 139 98-258 17-158 (187)
46 PRK12335 tellurite resistance 99.7 1.1E-15 2.3E-20 138.2 15.4 137 113-257 120-260 (287)
47 TIGR02021 BchM-ChlM magnesium 99.7 1.4E-15 3E-20 132.2 15.4 144 112-261 54-211 (219)
48 PRK11705 cyclopropane fatty ac 99.7 8.6E-16 1.9E-20 143.5 14.9 151 112-268 166-324 (383)
49 PF08242 Methyltransf_12: Meth 99.7 2.3E-17 4.9E-22 125.0 3.4 94 118-211 1-99 (99)
50 PF00891 Methyltransf_2: O-met 99.7 9.8E-17 2.1E-21 141.5 7.3 191 47-245 32-241 (241)
51 PLN02232 ubiquinone biosynthes 99.7 1E-15 2.2E-20 126.2 12.9 118 141-258 1-149 (160)
52 PF07021 MetW: Methionine bios 99.7 2.4E-15 5.3E-20 124.1 14.2 141 112-260 12-171 (193)
53 TIGR01983 UbiG ubiquinone bios 99.7 2.7E-15 5.9E-20 130.8 15.2 144 113-258 45-205 (224)
54 PF13649 Methyltransf_25: Meth 99.7 3.2E-16 7E-21 119.1 7.9 93 117-209 1-101 (101)
55 TIGR03587 Pse_Me-ase pseudamin 99.6 2.4E-15 5.1E-20 128.8 13.1 102 112-218 42-145 (204)
56 PRK04266 fibrillarin; Provisio 99.6 6.3E-15 1.4E-19 127.8 15.4 135 112-259 71-213 (226)
57 TIGR02081 metW methionine bios 99.6 5.9E-15 1.3E-19 125.8 14.8 137 113-257 13-168 (194)
58 PRK00121 trmB tRNA (guanine-N( 99.6 2.5E-15 5.3E-20 128.8 11.9 124 113-252 40-177 (202)
59 PRK06922 hypothetical protein; 99.6 1.7E-15 3.7E-20 146.2 11.9 106 113-218 418-540 (677)
60 TIGR00537 hemK_rel_arch HemK-r 99.6 1.8E-14 3.8E-19 121.3 16.1 126 113-258 19-167 (179)
61 TIGR03534 RF_mod_PrmC protein- 99.6 1.2E-14 2.6E-19 128.9 15.9 146 91-256 67-241 (251)
62 COG4976 Predicted methyltransf 99.6 6.4E-16 1.4E-20 128.9 5.9 187 78-270 89-279 (287)
63 PLN02336 phosphoethanolamine N 99.6 5E-15 1.1E-19 143.4 13.1 139 113-255 37-181 (475)
64 TIGR03840 TMPT_Se_Te thiopurin 99.6 1.6E-14 3.4E-19 124.4 14.6 137 113-257 34-188 (213)
65 PRK07580 Mg-protoporphyrin IX 99.6 1.2E-14 2.6E-19 127.3 14.0 145 112-262 62-220 (230)
66 PRK11088 rrmA 23S rRNA methylt 99.6 1.7E-14 3.6E-19 129.5 14.5 131 113-258 85-220 (272)
67 smart00138 MeTrc Methyltransfe 99.6 6.3E-15 1.4E-19 131.2 11.1 103 113-215 99-242 (264)
68 KOG2361 Predicted methyltransf 99.6 9.3E-15 2E-19 123.2 11.1 167 89-257 49-238 (264)
69 TIGR02469 CbiT precorrin-6Y C5 99.6 2.6E-14 5.7E-19 112.5 13.2 110 102-215 9-122 (124)
70 PRK14966 unknown domain/N5-glu 99.6 4.6E-14 1E-18 130.8 16.1 165 71-255 212-404 (423)
71 PF05401 NodS: Nodulation prot 99.6 2.5E-14 5.5E-19 118.3 12.7 134 113-257 43-180 (201)
72 TIGR00091 tRNA (guanine-N(7)-) 99.6 1.4E-14 3.1E-19 123.3 11.2 105 113-217 16-134 (194)
73 TIGR00536 hemK_fam HemK family 99.6 6.2E-14 1.3E-18 126.5 15.5 167 70-254 71-267 (284)
74 TIGR03533 L3_gln_methyl protei 99.6 8.5E-14 1.8E-18 125.3 16.2 168 70-256 78-274 (284)
75 PRK00377 cbiT cobalt-precorrin 99.6 1E-13 2.2E-18 118.5 15.8 140 97-257 25-170 (198)
76 COG2242 CobL Precorrin-6B meth 99.6 1.9E-13 4E-18 112.2 16.5 139 96-256 18-161 (187)
77 PRK09328 N5-glutamine S-adenos 99.6 9.7E-14 2.1E-18 124.9 15.6 148 89-255 85-261 (275)
78 PLN03075 nicotianamine synthas 99.6 5.1E-14 1.1E-18 125.2 13.1 102 113-215 123-233 (296)
79 TIGR03704 PrmC_rel_meth putati 99.6 1E-13 2.2E-18 122.6 14.8 169 69-254 42-238 (251)
80 PF03848 TehB: Tellurite resis 99.6 2.2E-14 4.8E-19 120.0 9.6 137 113-257 30-170 (192)
81 PRK13255 thiopurine S-methyltr 99.5 1.5E-13 3.3E-18 118.6 14.2 137 113-257 37-191 (218)
82 PRK11188 rrmJ 23S rRNA methylt 99.5 1.5E-13 3.4E-18 118.1 13.6 100 109-216 47-166 (209)
83 PRK01544 bifunctional N5-gluta 99.5 2.2E-13 4.9E-18 131.7 15.9 169 69-255 71-292 (506)
84 TIGR01177 conserved hypothetic 99.5 1.8E-13 3.9E-18 126.0 14.6 148 87-257 157-316 (329)
85 PRK11805 N5-glutamine S-adenos 99.5 2.4E-13 5.2E-18 123.5 14.3 167 70-256 90-286 (307)
86 PRK14968 putative methyltransf 99.5 4.8E-13 1E-17 113.2 15.1 127 112-257 22-174 (188)
87 KOG1541 Predicted protein carb 99.5 7.8E-14 1.7E-18 115.9 9.7 163 77-257 13-188 (270)
88 PTZ00146 fibrillarin; Provisio 99.5 1.2E-12 2.6E-17 116.0 17.8 136 112-260 131-275 (293)
89 PRK13944 protein-L-isoaspartat 99.5 2.1E-13 4.6E-18 117.1 12.2 108 101-215 61-173 (205)
90 COG2264 PrmA Ribosomal protein 99.5 4.7E-13 1E-17 118.7 14.1 138 97-258 148-290 (300)
91 PF05175 MTS: Methyltransferas 99.5 3.1E-13 6.7E-18 112.6 12.3 103 113-216 31-141 (170)
92 TIGR03438 probable methyltrans 99.5 1.2E-12 2.5E-17 119.1 16.9 103 112-214 62-176 (301)
93 PRK14967 putative methyltransf 99.5 2.6E-12 5.6E-17 111.9 17.9 127 112-256 35-184 (223)
94 PRK13942 protein-L-isoaspartat 99.5 5.7E-13 1.2E-17 115.0 13.7 109 99-214 63-175 (212)
95 KOG3178 Hydroxyindole-O-methyl 99.5 9.3E-14 2E-18 124.2 8.6 206 47-258 109-332 (342)
96 PRK00517 prmA ribosomal protei 99.5 5.8E-13 1.3E-17 118.0 12.9 123 112-258 118-240 (250)
97 PRK07402 precorrin-6B methylas 99.5 2.9E-12 6.3E-17 109.4 16.3 113 100-217 28-144 (196)
98 TIGR00080 pimt protein-L-isoas 99.5 1.1E-12 2.4E-17 113.6 13.6 108 100-214 65-176 (215)
99 COG2890 HemK Methylase of poly 99.5 1.6E-12 3.6E-17 116.4 14.5 165 71-256 70-263 (280)
100 TIGR00406 prmA ribosomal prote 99.5 1.9E-12 4E-17 117.0 15.0 123 112-257 158-284 (288)
101 PRK15001 SAM-dependent 23S rib 99.4 6.2E-13 1.4E-17 123.1 11.5 101 114-215 229-340 (378)
102 PHA03411 putative methyltransf 99.4 2.3E-12 5E-17 113.0 14.2 128 113-253 64-211 (279)
103 COG4123 Predicted O-methyltran 99.4 2.3E-12 5.1E-17 111.4 13.1 133 112-261 43-199 (248)
104 PF05148 Methyltransf_8: Hypot 99.4 2.2E-12 4.8E-17 107.5 12.0 150 79-260 40-189 (219)
105 PRK14121 tRNA (guanine-N(7)-)- 99.4 1.5E-12 3.2E-17 120.1 12.0 105 113-217 122-237 (390)
106 PF05891 Methyltransf_PK: AdoM 99.4 6.9E-13 1.5E-17 111.7 8.7 144 113-258 55-203 (218)
107 PF13659 Methyltransf_26: Meth 99.4 7.5E-13 1.6E-17 103.2 8.2 102 114-216 1-116 (117)
108 PRK09489 rsmC 16S ribosomal RN 99.4 9.8E-13 2.1E-17 121.0 10.1 102 114-217 197-305 (342)
109 KOG1271 Methyltransferases [Ge 99.4 5.7E-12 1.2E-16 101.9 12.4 129 113-258 67-207 (227)
110 PF06325 PrmA: Ribosomal prote 99.4 1E-12 2.2E-17 117.7 8.2 139 95-258 145-285 (295)
111 TIGR00438 rrmJ cell division p 99.4 1.3E-11 2.9E-16 104.6 14.4 96 112-215 31-146 (188)
112 PRK13256 thiopurine S-methyltr 99.4 1.9E-11 4E-16 105.3 14.3 130 113-251 43-192 (226)
113 cd02440 AdoMet_MTases S-adenos 99.4 8.1E-12 1.8E-16 94.0 10.7 98 116-214 1-103 (107)
114 PRK00312 pcm protein-L-isoaspa 99.4 1.5E-11 3.4E-16 106.2 13.7 109 99-216 65-176 (212)
115 PRK04457 spermidine synthase; 99.3 9.8E-12 2.1E-16 110.6 12.3 105 112-216 65-178 (262)
116 PLN02672 methionine S-methyltr 99.3 1.3E-11 2.8E-16 126.7 14.6 167 74-258 79-305 (1082)
117 COG2519 GCD14 tRNA(1-methylade 99.3 2.1E-11 4.5E-16 104.6 13.5 133 104-259 86-223 (256)
118 PRK01581 speE spermidine synth 99.3 3.5E-11 7.6E-16 109.6 15.5 137 112-261 149-302 (374)
119 COG2518 Pcm Protein-L-isoaspar 99.3 2.1E-11 4.5E-16 102.4 12.7 108 100-216 60-170 (209)
120 PF08704 GCD14: tRNA methyltra 99.3 3.2E-11 7E-16 105.3 12.5 136 103-260 31-175 (247)
121 PF05219 DREV: DREV methyltran 99.3 7.7E-11 1.7E-15 101.7 14.2 136 113-258 94-242 (265)
122 COG2813 RsmC 16S RNA G1207 met 99.3 2.5E-11 5.4E-16 107.2 11.3 109 105-216 151-267 (300)
123 PRK00811 spermidine synthase; 99.3 2.3E-11 5.1E-16 109.4 11.2 103 113-215 76-191 (283)
124 PF06080 DUF938: Protein of un 99.3 5.5E-11 1.2E-15 99.8 12.6 146 114-259 26-195 (204)
125 PF05724 TPMT: Thiopurine S-me 99.3 6.9E-11 1.5E-15 101.9 13.3 138 112-257 36-191 (218)
126 KOG3010 Methyltransferase [Gen 99.3 1.6E-11 3.5E-16 103.9 8.9 100 115-217 35-139 (261)
127 PF12147 Methyltransf_20: Puta 99.3 1.3E-10 2.9E-15 101.4 14.7 145 112-256 134-298 (311)
128 PRK13943 protein-L-isoaspartat 99.3 5.3E-11 1.2E-15 108.3 12.5 108 100-214 68-179 (322)
129 PF01135 PCMT: Protein-L-isoas 99.3 2.4E-11 5.2E-16 104.0 9.3 111 98-215 58-172 (209)
130 KOG3045 Predicted RNA methylas 99.3 3.7E-11 8E-16 102.4 10.1 129 101-261 168-296 (325)
131 KOG2899 Predicted methyltransf 99.3 2.3E-10 5.1E-15 96.8 14.7 144 113-256 58-257 (288)
132 PRK14901 16S rRNA methyltransf 99.2 1.6E-10 3.4E-15 110.5 14.8 128 112-252 251-409 (434)
133 PRK03612 spermidine synthase; 99.2 2.2E-10 4.7E-15 111.6 15.2 126 112-250 296-438 (521)
134 PRK10901 16S rRNA methyltransf 99.2 2.8E-10 6.1E-15 108.5 15.2 129 112-253 243-398 (427)
135 PF02390 Methyltransf_4: Putat 99.2 1.1E-10 2.4E-15 99.1 9.7 103 115-217 19-135 (195)
136 PRK14904 16S rRNA methyltransf 99.2 4.4E-10 9.6E-15 107.7 14.9 128 112-253 249-403 (445)
137 TIGR00563 rsmB ribosomal RNA s 99.2 3.5E-10 7.6E-15 107.8 14.1 107 112-218 237-371 (426)
138 smart00650 rADc Ribosomal RNA 99.2 4.2E-10 9.1E-15 93.7 12.5 99 112-215 12-113 (169)
139 KOG2940 Predicted methyltransf 99.2 7.5E-11 1.6E-15 98.8 7.3 141 112-254 71-225 (325)
140 PRK14903 16S rRNA methyltransf 99.2 8.1E-10 1.8E-14 105.2 15.1 107 112-218 236-369 (431)
141 PRK14902 16S rRNA methyltransf 99.2 8.6E-10 1.9E-14 105.8 15.2 105 112-217 249-381 (444)
142 PLN02366 spermidine synthase 99.1 4.4E-10 9.5E-15 101.8 11.7 104 112-215 90-206 (308)
143 COG2521 Predicted archaeal met 99.1 3.3E-10 7.2E-15 95.3 9.0 135 112-257 133-278 (287)
144 TIGR00417 speE spermidine synt 99.1 6.3E-10 1.4E-14 99.7 11.0 103 113-215 72-186 (270)
145 TIGR00446 nop2p NOL1/NOP2/sun 99.1 9E-10 2E-14 98.3 11.8 107 112-218 70-202 (264)
146 PHA03412 putative methyltransf 99.1 1.1E-09 2.4E-14 94.1 11.5 133 113-251 49-197 (241)
147 PF03291 Pox_MCEL: mRNA cappin 99.1 4.9E-10 1.1E-14 102.4 9.9 145 113-258 62-269 (331)
148 KOG2904 Predicted methyltransf 99.1 1.1E-09 2.3E-14 94.4 11.0 146 71-216 104-286 (328)
149 PRK13168 rumA 23S rRNA m(5)U19 99.1 2.5E-09 5.4E-14 102.5 14.9 137 98-258 283-426 (443)
150 KOG1499 Protein arginine N-met 99.1 3.6E-10 7.8E-15 101.2 7.8 124 86-212 34-164 (346)
151 PRK11783 rlmL 23S rRNA m(2)G24 99.0 1.1E-09 2.5E-14 110.3 11.4 128 113-258 538-682 (702)
152 PLN02781 Probable caffeoyl-CoA 99.0 3.5E-09 7.5E-14 92.7 11.7 102 112-216 67-179 (234)
153 PF11968 DUF3321: Putative met 99.0 5.6E-09 1.2E-13 87.9 12.3 122 114-259 52-184 (219)
154 COG0220 Predicted S-adenosylme 99.0 1.5E-09 3.2E-14 93.8 8.9 103 115-217 50-166 (227)
155 COG1041 Predicted DNA modifica 99.0 1.1E-08 2.4E-13 92.2 14.3 145 89-257 174-331 (347)
156 PF01739 CheR: CheR methyltran 99.0 2.1E-09 4.5E-14 91.0 9.1 103 113-215 31-175 (196)
157 PRK15128 23S rRNA m(5)C1962 me 99.0 4.5E-09 9.8E-14 98.6 12.1 104 113-217 220-341 (396)
158 PRK10909 rsmD 16S rRNA m(2)G96 99.0 6.3E-09 1.4E-13 88.4 11.8 118 97-216 37-160 (199)
159 PRK10611 chemotaxis methyltran 99.0 3.9E-09 8.5E-14 94.4 10.6 103 113-215 115-262 (287)
160 PRK03522 rumB 23S rRNA methylu 98.9 1.3E-08 2.9E-13 93.2 13.4 122 113-258 173-298 (315)
161 KOG1975 mRNA cap methyltransfe 98.9 4.6E-09 9.9E-14 92.6 9.7 106 112-218 116-240 (389)
162 TIGR00479 rumA 23S rRNA (uraci 98.9 2E-08 4.4E-13 96.1 14.0 136 100-258 280-422 (431)
163 COG2263 Predicted RNA methylas 98.9 1.2E-07 2.6E-12 77.9 16.2 120 113-257 45-169 (198)
164 COG1352 CheR Methylase of chem 98.9 2.2E-08 4.7E-13 88.5 12.5 118 98-215 79-241 (268)
165 PF10294 Methyltransf_16: Puta 98.9 5.6E-09 1.2E-13 87.1 8.0 106 112-218 44-159 (173)
166 PRK11727 23S rRNA mA1618 methy 98.9 4E-08 8.8E-13 89.2 14.1 146 113-258 114-294 (321)
167 PF01170 UPF0020: Putative RNA 98.9 2E-08 4.4E-13 84.2 11.2 150 87-258 3-173 (179)
168 KOG1500 Protein arginine N-met 98.9 2.2E-08 4.7E-13 88.7 11.6 108 102-213 167-280 (517)
169 COG4122 Predicted O-methyltran 98.9 1.3E-08 2.8E-13 86.9 9.5 104 112-218 58-169 (219)
170 PRK00274 ksgA 16S ribosomal RN 98.9 1E-08 2.2E-13 92.0 9.3 86 100-188 30-115 (272)
171 PLN02823 spermine synthase 98.9 1.9E-08 4.1E-13 92.2 11.2 102 113-215 103-220 (336)
172 TIGR00478 tly hemolysin TlyA f 98.9 3.2E-08 7E-13 85.7 11.6 131 112-257 74-218 (228)
173 PF07942 N2227: N2227-like pro 98.8 8.3E-08 1.8E-12 84.7 14.2 142 112-256 55-242 (270)
174 PF02527 GidB: rRNA small subu 98.8 8.8E-08 1.9E-12 80.2 13.0 126 114-258 49-177 (184)
175 PF01596 Methyltransf_3: O-met 98.8 2.3E-08 5E-13 85.4 8.8 104 112-218 44-158 (205)
176 PRK14896 ksgA 16S ribosomal RN 98.8 3.5E-08 7.5E-13 87.8 10.3 86 99-189 16-102 (258)
177 PLN02476 O-methyltransferase 98.8 2.7E-08 5.8E-13 88.4 9.3 103 112-217 117-230 (278)
178 KOG3191 Predicted N6-DNA-methy 98.8 1.5E-07 3.3E-12 76.5 12.8 127 114-257 44-194 (209)
179 PRK01544 bifunctional N5-gluta 98.8 2.6E-08 5.6E-13 96.7 9.6 105 113-217 347-464 (506)
180 COG0421 SpeE Spermidine syntha 98.8 5.5E-08 1.2E-12 86.8 10.8 101 113-215 76-190 (282)
181 COG3963 Phospholipid N-methylt 98.7 3.4E-07 7.4E-12 73.5 13.1 115 100-217 36-158 (194)
182 TIGR00755 ksgA dimethyladenosi 98.7 1.7E-07 3.8E-12 83.2 12.5 85 99-188 16-104 (253)
183 TIGR02085 meth_trns_rumB 23S r 98.7 1.6E-07 3.4E-12 88.1 12.4 122 113-258 233-358 (374)
184 PRK00536 speE spermidine synth 98.7 1.5E-07 3.4E-12 82.9 11.3 95 112-216 71-172 (262)
185 KOG1661 Protein-L-isoaspartate 98.7 4.8E-08 1E-12 81.2 7.5 97 112-214 81-192 (237)
186 PF03141 Methyltransf_29: Puta 98.7 3E-08 6.5E-13 93.0 5.6 101 113-219 117-223 (506)
187 PTZ00338 dimethyladenosine tra 98.7 1E-07 2.2E-12 86.0 8.8 86 99-189 23-112 (294)
188 KOG2915 tRNA(1-methyladenosine 98.6 5.7E-07 1.2E-11 77.8 11.9 127 112-259 104-238 (314)
189 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.6 8.7E-08 1.9E-12 84.0 7.1 141 113-255 56-238 (256)
190 TIGR00095 RNA methyltransferas 98.6 5.3E-07 1.1E-11 76.3 11.3 118 97-216 33-160 (189)
191 COG1092 Predicted SAM-dependen 98.6 2.8E-07 6.2E-12 85.6 10.0 104 113-218 217-339 (393)
192 PLN02589 caffeoyl-CoA O-methyl 98.6 1.9E-07 4.1E-12 81.9 8.3 101 113-216 79-191 (247)
193 PF09243 Rsm22: Mitochondrial 98.6 7.2E-07 1.6E-11 79.9 12.2 127 113-253 33-165 (274)
194 PRK04148 hypothetical protein; 98.6 7.5E-07 1.6E-11 70.0 10.6 92 113-215 16-109 (134)
195 PF05185 PRMT5: PRMT5 arginine 98.6 4.1E-07 9E-12 86.6 10.8 98 114-212 187-294 (448)
196 KOG3987 Uncharacterized conser 98.5 3E-08 6.6E-13 82.0 2.1 138 112-257 111-261 (288)
197 COG0357 GidB Predicted S-adeno 98.5 1.5E-06 3.3E-11 74.1 12.5 131 114-262 68-201 (215)
198 PRK04338 N(2),N(2)-dimethylgua 98.5 4.5E-07 9.8E-12 84.8 10.1 97 114-214 58-157 (382)
199 KOG1331 Predicted methyltransf 98.5 1.4E-07 2.9E-12 82.4 6.0 96 113-216 45-144 (293)
200 PF02475 Met_10: Met-10+ like- 98.5 3.2E-07 7E-12 77.8 8.2 96 111-211 99-198 (200)
201 COG4262 Predicted spermidine s 98.5 8.6E-07 1.9E-11 79.7 11.1 132 112-261 288-441 (508)
202 PF01564 Spermine_synth: Sperm 98.5 2E-07 4.2E-12 82.2 7.1 103 113-215 76-191 (246)
203 PF04672 Methyltransf_19: S-ad 98.5 5.1E-07 1.1E-11 79.1 8.9 138 114-253 69-233 (267)
204 PRK05031 tRNA (uracil-5-)-meth 98.5 1.6E-06 3.6E-11 80.8 12.2 120 114-258 207-345 (362)
205 KOG1269 SAM-dependent methyltr 98.5 2.7E-07 5.9E-12 85.2 6.8 143 113-256 110-267 (364)
206 PRK00050 16S rRNA m(4)C1402 me 98.4 5.5E-07 1.2E-11 80.9 7.6 95 100-195 7-109 (296)
207 KOG3201 Uncharacterized conser 98.4 1.4E-07 3E-12 75.2 3.0 133 113-260 29-170 (201)
208 PF10672 Methyltrans_SAM: S-ad 98.4 5.2E-07 1.1E-11 80.6 6.9 104 113-217 123-240 (286)
209 TIGR02143 trmA_only tRNA (urac 98.4 5.4E-06 1.2E-10 77.1 13.5 119 115-258 199-336 (353)
210 COG0030 KsgA Dimethyladenosine 98.4 2E-06 4.4E-11 75.3 9.7 88 98-188 16-105 (259)
211 PRK11933 yebU rRNA (cytosine-C 98.4 5.1E-06 1.1E-10 79.6 13.1 107 112-218 112-245 (470)
212 COG0500 SmtA SAM-dependent met 98.4 6E-06 1.3E-10 66.8 12.0 101 117-219 52-159 (257)
213 PF03602 Cons_hypoth95: Conser 98.4 4.6E-07 1E-11 76.1 5.1 123 94-217 22-155 (183)
214 PF01728 FtsJ: FtsJ-like methy 98.3 7.7E-07 1.7E-11 74.8 5.1 97 113-217 23-141 (181)
215 TIGR03439 methyl_EasF probable 98.3 9.4E-06 2E-10 73.9 12.1 104 112-215 75-197 (319)
216 KOG3420 Predicted RNA methylas 98.3 1.3E-06 2.8E-11 68.4 5.2 77 113-190 48-126 (185)
217 KOG0820 Ribosomal RNA adenine 98.2 7.3E-06 1.6E-10 71.1 9.5 84 99-187 45-132 (315)
218 PF01269 Fibrillarin: Fibrilla 98.2 9.3E-05 2E-09 62.9 15.6 146 99-260 57-216 (229)
219 KOG1709 Guanidinoacetate methy 98.2 6.6E-06 1.4E-10 68.9 8.4 118 95-215 85-206 (271)
220 KOG3115 Methyltransferase-like 98.2 6E-06 1.3E-10 68.5 8.0 104 113-218 60-186 (249)
221 PRK11783 rlmL 23S rRNA m(2)G24 98.2 2E-05 4.3E-10 79.9 13.6 130 87-216 164-348 (702)
222 KOG1663 O-methyltransferase [S 98.2 1.4E-05 3.1E-10 67.8 10.5 100 113-216 73-184 (237)
223 COG2265 TrmA SAM-dependent met 98.2 2E-05 4.3E-10 74.8 12.1 138 98-258 279-422 (432)
224 COG0742 N6-adenine-specific me 98.2 3.3E-05 7.2E-10 64.2 11.4 122 95-217 24-156 (187)
225 COG2520 Predicted methyltransf 98.1 2.2E-05 4.8E-10 71.6 11.1 124 112-250 187-314 (341)
226 PRK11760 putative 23S rRNA C24 98.1 8.5E-05 1.8E-09 67.4 14.5 120 112-250 210-333 (357)
227 COG0293 FtsJ 23S rRNA methylas 98.1 1.8E-05 3.9E-10 66.7 9.5 108 102-217 34-161 (205)
228 COG4798 Predicted methyltransf 98.1 2.7E-05 5.9E-10 64.2 10.0 149 105-258 41-207 (238)
229 PF08123 DOT1: Histone methyla 98.1 7.9E-06 1.7E-10 69.7 7.0 115 100-216 30-159 (205)
230 PF02384 N6_Mtase: N-6 DNA Met 98.1 9.5E-06 2.1E-10 74.3 8.0 141 112-264 45-220 (311)
231 TIGR00308 TRM1 tRNA(guanine-26 98.1 2.1E-05 4.5E-10 73.4 9.2 98 114-215 45-147 (374)
232 COG3897 Predicted methyltransf 98.1 3E-05 6.5E-10 64.2 9.0 103 112-219 78-183 (218)
233 COG0144 Sun tRNA and rRNA cyto 98.0 0.00016 3.4E-09 67.3 14.8 130 112-254 155-315 (355)
234 COG1889 NOP1 Fibrillarin-like 98.0 0.00022 4.9E-09 59.4 13.9 145 98-260 59-218 (231)
235 PF04816 DUF633: Family of unk 98.0 8.9E-05 1.9E-09 63.3 11.6 121 117-258 1-126 (205)
236 COG1189 Predicted rRNA methyla 98.0 6E-05 1.3E-09 64.5 10.3 146 103-257 69-225 (245)
237 PF09445 Methyltransf_15: RNA 98.0 6.6E-06 1.4E-10 67.2 4.4 69 115-185 1-76 (163)
238 TIGR02987 met_A_Alw26 type II 98.0 3.8E-05 8.3E-10 75.4 10.0 77 113-189 31-123 (524)
239 PF05958 tRNA_U5-meth_tr: tRNA 97.9 4.5E-05 9.7E-10 71.0 9.3 70 98-171 183-255 (352)
240 PF00398 RrnaAD: Ribosomal RNA 97.9 5.5E-05 1.2E-09 67.5 9.3 104 98-207 16-123 (262)
241 COG4627 Uncharacterized protei 97.9 6.4E-06 1.4E-10 65.3 2.1 56 162-217 31-88 (185)
242 KOG4589 Cell division protein 97.9 8.3E-05 1.8E-09 61.0 8.6 104 107-218 63-187 (232)
243 COG0116 Predicted N6-adenine-s 97.9 0.00017 3.6E-09 66.5 11.2 123 92-215 171-344 (381)
244 PF03059 NAS: Nicotianamine sy 97.8 0.00011 2.4E-09 65.2 9.6 103 113-215 120-230 (276)
245 PF13679 Methyltransf_32: Meth 97.8 0.00017 3.8E-09 57.9 9.4 96 112-214 24-130 (141)
246 COG4076 Predicted RNA methylas 97.8 6.4E-05 1.4E-09 61.7 6.6 95 115-213 34-133 (252)
247 KOG2798 Putative trehalase [Ca 97.8 0.00011 2.4E-09 65.1 8.6 144 113-258 150-339 (369)
248 PLN02668 indole-3-acetate carb 97.7 0.00067 1.4E-08 63.2 12.9 146 113-258 63-311 (386)
249 TIGR00006 S-adenosyl-methyltra 97.7 0.00014 3.1E-09 65.6 8.2 88 100-188 8-102 (305)
250 KOG2352 Predicted spermine/spe 97.7 0.00024 5.2E-09 66.9 9.9 101 115-216 50-162 (482)
251 PF13578 Methyltransf_24: Meth 97.6 1.1E-05 2.4E-10 61.4 0.1 97 118-215 1-105 (106)
252 TIGR01444 fkbM_fam methyltrans 97.6 0.0002 4.4E-09 57.4 6.9 56 116-171 1-59 (143)
253 KOG2730 Methylase [General fun 97.6 0.00021 4.5E-09 60.3 6.9 72 113-186 94-173 (263)
254 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.5 0.00037 8.1E-09 62.8 7.9 129 112-253 84-245 (283)
255 PF06962 rRNA_methylase: Putat 97.5 0.00089 1.9E-08 53.1 8.5 112 139-258 1-127 (140)
256 COG2384 Predicted SAM-dependen 97.5 0.002 4.3E-08 54.7 11.0 127 112-258 15-145 (226)
257 PF07091 FmrO: Ribosomal RNA m 97.3 0.0012 2.5E-08 57.4 8.6 138 112-257 104-244 (251)
258 COG5459 Predicted rRNA methyla 97.3 0.00078 1.7E-08 60.7 7.5 109 113-222 113-232 (484)
259 PF04989 CmcI: Cephalosporin h 97.3 0.00099 2.2E-08 56.4 7.7 138 113-251 32-185 (206)
260 COG1064 AdhP Zn-dependent alco 97.2 0.0041 9E-08 56.8 11.3 95 112-217 165-261 (339)
261 PF03492 Methyltransf_7: SAM d 97.1 0.0031 6.7E-08 58.2 9.3 146 112-257 15-254 (334)
262 PRK10742 putative methyltransf 97.1 0.0017 3.8E-08 56.5 7.1 77 113-191 86-177 (250)
263 KOG2187 tRNA uracil-5-methyltr 97.1 0.00066 1.4E-08 64.3 4.8 65 104-171 375-442 (534)
264 PF01795 Methyltransf_5: MraW 97.0 0.0013 2.9E-08 59.3 6.2 83 102-185 10-100 (310)
265 PF03141 Methyltransf_29: Puta 97.0 0.0011 2.3E-08 62.9 5.5 115 113-252 365-487 (506)
266 PF01861 DUF43: Protein of unk 96.8 0.073 1.6E-06 46.2 14.5 131 113-256 44-178 (243)
267 PRK09424 pntA NAD(P) transhydr 96.8 0.02 4.4E-07 55.6 12.1 100 112-216 163-286 (509)
268 KOG1099 SAM-dependent methyltr 96.7 0.003 6.4E-08 53.8 5.1 97 110-214 38-162 (294)
269 KOG2793 Putative N2,N2-dimethy 96.7 0.0067 1.5E-07 53.0 7.2 104 113-218 86-202 (248)
270 KOG0024 Sorbitol dehydrogenase 96.6 0.022 4.7E-07 51.3 10.2 101 112-219 168-277 (354)
271 PF06859 Bin3: Bicoid-interact 96.6 0.0016 3.4E-08 49.1 2.6 81 178-258 1-94 (110)
272 KOG1562 Spermidine synthase [A 96.6 0.0061 1.3E-07 53.9 6.3 100 112-216 120-237 (337)
273 PF11599 AviRa: RRNA methyltra 96.6 0.02 4.4E-07 48.4 9.1 115 100-215 39-214 (246)
274 PHA01634 hypothetical protein 96.5 0.014 3E-07 45.1 7.3 71 113-184 28-98 (156)
275 PRK09880 L-idonate 5-dehydroge 96.5 0.015 3.2E-07 54.0 9.1 98 113-216 169-267 (343)
276 cd08283 FDH_like_1 Glutathione 96.5 0.015 3.3E-07 54.9 9.3 105 112-216 183-307 (386)
277 PF05971 Methyltransf_10: Prot 96.4 0.011 2.3E-07 53.3 7.2 79 114-193 103-192 (299)
278 KOG1596 Fibrillarin and relate 96.4 0.015 3.2E-07 50.0 7.5 96 112-215 155-261 (317)
279 COG1063 Tdh Threonine dehydrog 96.3 0.027 5.8E-07 52.5 9.4 100 113-218 168-272 (350)
280 COG4301 Uncharacterized conser 96.3 0.14 3E-06 44.5 12.5 102 113-214 78-192 (321)
281 TIGR00027 mthyl_TIGR00027 meth 96.3 0.067 1.5E-06 47.6 11.4 139 114-254 82-248 (260)
282 cd00315 Cyt_C5_DNA_methylase C 96.2 0.17 3.6E-06 45.5 13.7 129 116-259 2-145 (275)
283 COG0275 Predicted S-adenosylme 96.1 0.027 5.8E-07 50.3 8.0 88 99-187 10-105 (314)
284 KOG0822 Protein kinase inhibit 96.1 0.02 4.4E-07 54.6 7.6 116 96-212 348-475 (649)
285 KOG1122 tRNA and rRNA cytosine 96.1 0.057 1.2E-06 50.3 9.9 106 111-217 239-373 (460)
286 PRK01747 mnmC bifunctional tRN 96.0 0.055 1.2E-06 54.9 10.9 124 113-257 57-228 (662)
287 PF10354 DUF2431: Domain of un 95.9 0.24 5.2E-06 40.8 12.1 133 119-265 2-161 (166)
288 PF04445 SAM_MT: Putative SAM- 95.8 0.035 7.7E-07 48.1 7.2 74 115-190 77-163 (234)
289 KOG2198 tRNA cytosine-5-methyl 95.6 0.27 5.9E-06 45.2 12.4 107 112-218 154-299 (375)
290 PF03269 DUF268: Caenorhabditi 95.6 0.0084 1.8E-07 48.3 2.4 132 114-257 2-146 (177)
291 PF11312 DUF3115: Protein of u 95.6 0.028 6E-07 50.6 5.7 105 113-217 86-244 (315)
292 PF00107 ADH_zinc_N: Zinc-bind 95.5 0.019 4.1E-07 45.0 4.0 86 123-218 1-92 (130)
293 TIGR00561 pntA NAD(P) transhyd 95.5 0.08 1.7E-06 51.4 8.9 97 113-214 163-283 (511)
294 PF02636 Methyltransf_28: Puta 95.3 0.072 1.6E-06 47.2 7.6 74 114-192 19-109 (252)
295 cd08230 glucose_DH Glucose deh 95.0 0.16 3.6E-06 47.2 9.5 97 112-217 171-271 (355)
296 PF02005 TRM: N2,N2-dimethylgu 95.0 0.086 1.9E-06 49.5 7.5 100 113-216 49-155 (377)
297 COG1867 TRM1 N2,N2-dimethylgua 95.0 0.082 1.8E-06 48.5 7.0 98 114-215 53-154 (380)
298 KOG2920 Predicted methyltransf 94.9 0.027 5.8E-07 49.8 3.5 105 109-214 112-233 (282)
299 PF07757 AdoMet_MTase: Predict 94.8 0.024 5.3E-07 42.5 2.6 31 113-145 58-88 (112)
300 cd08237 ribitol-5-phosphate_DH 94.8 0.19 4.1E-06 46.6 9.1 94 112-216 162-257 (341)
301 COG3315 O-Methyltransferase in 94.6 0.21 4.6E-06 45.3 8.8 140 114-255 93-263 (297)
302 COG0286 HsdM Type I restrictio 94.6 0.55 1.2E-05 45.8 12.2 105 112-216 185-327 (489)
303 cd08254 hydroxyacyl_CoA_DH 6-h 94.6 0.67 1.4E-05 42.4 12.3 94 112-216 164-264 (338)
304 KOG4058 Uncharacterized conser 94.5 0.26 5.7E-06 39.2 7.8 116 97-219 57-176 (199)
305 cd05188 MDR Medium chain reduc 94.5 0.76 1.6E-05 40.3 12.1 98 112-216 133-233 (271)
306 PRK13699 putative methylase; P 94.5 0.11 2.4E-06 45.3 6.3 78 163-257 3-97 (227)
307 TIGR01202 bchC 2-desacetyl-2-h 94.4 0.27 5.8E-06 44.8 9.2 88 113-216 144-232 (308)
308 PF02254 TrkA_N: TrkA-N domain 94.3 0.88 1.9E-05 34.6 10.6 102 122-252 4-113 (116)
309 PRK11524 putative methyltransf 94.2 0.15 3.3E-06 46.0 6.9 60 95-158 192-251 (284)
310 COG3510 CmcI Cephalosporin hyd 94.1 0.21 4.6E-06 41.6 6.8 106 113-220 69-185 (237)
311 PTZ00357 methyltransferase; Pr 94.1 0.32 6.9E-06 48.3 9.1 95 115-210 702-830 (1072)
312 TIGR02822 adh_fam_2 zinc-bindi 94.0 0.59 1.3E-05 43.0 10.7 91 112-216 164-255 (329)
313 PF01555 N6_N4_Mtase: DNA meth 94.0 0.14 3.1E-06 44.0 6.3 57 95-155 175-231 (231)
314 cd08232 idonate-5-DH L-idonate 93.7 0.46 1E-05 43.6 9.4 93 113-215 165-262 (339)
315 KOG1253 tRNA methyltransferase 93.6 0.083 1.8E-06 50.2 4.1 101 112-216 108-217 (525)
316 COG0686 Ald Alanine dehydrogen 93.5 0.21 4.6E-06 44.9 6.2 99 113-213 167-266 (371)
317 cd08281 liver_ADH_like1 Zinc-d 93.5 0.27 5.9E-06 46.1 7.6 98 112-216 190-291 (371)
318 KOG2539 Mitochondrial/chloropl 93.5 0.34 7.3E-06 45.9 7.9 107 113-219 200-319 (491)
319 TIGR03451 mycoS_dep_FDH mycoth 93.4 0.37 8E-06 44.9 8.2 97 112-216 175-277 (358)
320 PF05430 Methyltransf_30: S-ad 93.3 0.065 1.4E-06 41.8 2.4 76 162-258 33-113 (124)
321 KOG2651 rRNA adenine N-6-methy 93.2 0.19 4.1E-06 46.3 5.5 44 111-155 151-194 (476)
322 cd00401 AdoHcyase S-adenosyl-L 93.1 1.1 2.4E-05 42.6 10.7 101 100-216 188-290 (413)
323 COG0270 Dcm Site-specific DNA 93.0 1.4 3E-05 40.6 11.2 123 114-250 3-141 (328)
324 PRK13699 putative methylase; P 93.0 0.37 8.1E-06 41.9 7.0 58 96-157 148-205 (227)
325 COG1565 Uncharacterized conser 92.9 0.25 5.3E-06 45.5 5.9 45 113-157 77-129 (370)
326 TIGR03366 HpnZ_proposed putati 92.2 0.57 1.2E-05 42.0 7.4 95 113-216 120-219 (280)
327 cd08239 THR_DH_like L-threonin 92.0 0.62 1.3E-05 42.8 7.7 98 112-216 162-263 (339)
328 TIGR03201 dearomat_had 6-hydro 92.0 0.93 2E-05 42.0 8.9 98 112-216 165-273 (349)
329 TIGR00675 dcm DNA-methyltransf 91.8 2.2 4.8E-05 39.1 10.9 122 117-253 1-137 (315)
330 PLN02740 Alcohol dehydrogenase 91.6 0.75 1.6E-05 43.3 7.8 96 112-216 197-301 (381)
331 KOG2352 Predicted spermine/spe 91.6 0.28 6E-06 46.8 4.7 106 113-219 295-420 (482)
332 PRK10309 galactitol-1-phosphat 91.5 0.89 1.9E-05 42.0 8.1 98 112-216 159-261 (347)
333 COG0604 Qor NADPH:quinone redu 91.4 0.86 1.9E-05 42.0 7.8 99 112-218 141-244 (326)
334 PF11899 DUF3419: Protein of u 91.1 0.28 6.2E-06 46.0 4.3 60 160-219 275-338 (380)
335 PF00145 DNA_methylase: C-5 cy 91.1 3.2 6.9E-05 37.8 11.4 130 116-262 2-147 (335)
336 cd08255 2-desacetyl-2-hydroxye 91.1 2.2 4.7E-05 37.8 10.0 93 112-215 96-190 (277)
337 TIGR00518 alaDH alanine dehydr 91.0 0.54 1.2E-05 44.2 6.1 100 113-214 166-266 (370)
338 KOG2078 tRNA modification enzy 91.0 0.12 2.6E-06 48.2 1.7 59 109-169 245-308 (495)
339 cd08245 CAD Cinnamyl alcohol d 90.9 1.9 4.1E-05 39.3 9.7 94 112-215 161-256 (330)
340 PF03514 GRAS: GRAS domain fam 90.9 3.2 6.8E-05 39.1 11.1 102 113-214 110-243 (374)
341 PLN03154 putative allyl alcoho 90.9 1.6 3.4E-05 40.6 9.1 97 112-216 157-259 (348)
342 PLN02827 Alcohol dehydrogenase 90.7 0.91 2E-05 42.7 7.4 98 112-216 192-296 (378)
343 KOG2918 Carboxymethyl transfer 90.6 7.3 0.00016 35.3 12.3 148 112-260 86-281 (335)
344 COG3129 Predicted SAM-dependen 90.5 0.86 1.9E-05 39.3 6.2 96 95-191 59-166 (292)
345 PLN02586 probable cinnamyl alc 90.4 1.6 3.4E-05 40.8 8.7 96 112-216 182-279 (360)
346 COG1062 AdhC Zn-dependent alco 90.0 1.5 3.3E-05 40.1 7.7 100 112-217 184-287 (366)
347 cd08294 leukotriene_B4_DH_like 89.9 1.6 3.4E-05 39.8 8.1 95 112-215 142-241 (329)
348 KOG1501 Arginine N-methyltrans 89.7 0.48 1E-05 44.5 4.4 52 114-166 67-122 (636)
349 PRK11524 putative methyltransf 89.4 0.36 7.9E-06 43.5 3.4 56 160-215 7-80 (284)
350 PF05711 TylF: Macrocin-O-meth 89.3 2.4 5.1E-05 37.4 8.3 104 113-218 74-215 (248)
351 TIGR02825 B4_12hDH leukotriene 89.3 1.9 4E-05 39.4 8.1 95 112-215 137-237 (325)
352 cd05278 FDH_like Formaldehyde 89.2 2 4.3E-05 39.5 8.4 98 112-215 166-267 (347)
353 cd08285 NADP_ADH NADP(H)-depen 89.1 2 4.2E-05 39.8 8.2 99 112-216 165-267 (351)
354 cd08261 Zn_ADH7 Alcohol dehydr 89.0 2.2 4.8E-05 39.1 8.5 97 112-215 158-258 (337)
355 TIGR02818 adh_III_F_hyde S-(hy 89.0 1.7 3.7E-05 40.7 7.7 99 112-216 184-288 (368)
356 PRK05786 fabG 3-ketoacyl-(acyl 88.9 14 0.0003 31.7 13.4 103 113-216 4-136 (238)
357 cd08234 threonine_DH_like L-th 88.9 5.4 0.00012 36.3 11.0 94 112-215 158-257 (334)
358 PLN02514 cinnamyl-alcohol dehy 88.6 3.3 7.2E-05 38.5 9.5 97 112-216 179-276 (357)
359 TIGR02819 fdhA_non_GSH formald 88.4 6.8 0.00015 37.1 11.4 102 112-216 184-300 (393)
360 COG1255 Uncharacterized protei 88.1 2.8 6.1E-05 32.0 6.7 85 114-214 14-101 (129)
361 cd08300 alcohol_DH_class_III c 88.0 2.3 5.1E-05 39.7 8.0 97 112-216 185-289 (368)
362 PRK03659 glutathione-regulated 87.9 6.2 0.00013 39.7 11.3 90 115-215 401-498 (601)
363 KOG0022 Alcohol dehydrogenase, 87.9 4.4 9.5E-05 36.8 8.9 97 112-216 191-295 (375)
364 KOG1269 SAM-dependent methyltr 87.6 2.1 4.6E-05 40.0 7.3 104 113-219 180-317 (364)
365 PF05206 TRM13: Methyltransfer 87.5 1.2 2.7E-05 39.4 5.4 103 109-214 14-139 (259)
366 cd05285 sorbitol_DH Sorbitol d 87.5 3.7 8E-05 37.8 8.9 96 112-215 161-265 (343)
367 TIGR00936 ahcY adenosylhomocys 87.5 5.2 0.00011 38.0 9.8 90 112-217 193-284 (406)
368 cd05213 NAD_bind_Glutamyl_tRNA 87.4 3.2 6.9E-05 38.0 8.3 124 113-246 177-302 (311)
369 cd08295 double_bond_reductase_ 87.4 3.4 7.4E-05 37.9 8.6 96 112-215 150-251 (338)
370 PRK08267 short chain dehydroge 87.4 6.1 0.00013 34.6 10.0 73 115-189 2-88 (260)
371 PRK07066 3-hydroxybutyryl-CoA 87.1 6.3 0.00014 36.2 10.0 138 114-258 7-187 (321)
372 COG1748 LYS9 Saccharopine dehy 87.1 7.4 0.00016 36.6 10.5 71 115-186 2-76 (389)
373 cd08242 MDR_like Medium chain 87.0 6.3 0.00014 35.7 10.1 91 112-215 154-245 (319)
374 cd08277 liver_alcohol_DH_like 86.9 3.4 7.4E-05 38.5 8.4 98 112-216 183-287 (365)
375 PRK10669 putative cation:proto 86.9 8.2 0.00018 38.4 11.5 89 115-214 418-514 (558)
376 cd08293 PTGR2 Prostaglandin re 86.8 8.3 0.00018 35.3 10.9 93 115-215 156-254 (345)
377 cd08233 butanediol_DH_like (2R 86.4 3.3 7.2E-05 38.2 8.0 98 112-216 171-273 (351)
378 PLN02494 adenosylhomocysteinas 86.4 4 8.7E-05 39.4 8.5 101 101-216 241-342 (477)
379 PF02737 3HCDH_N: 3-hydroxyacy 86.2 3.5 7.5E-05 34.4 7.2 132 116-255 1-178 (180)
380 COG4017 Uncharacterized protei 86.1 5.7 0.00012 33.3 8.1 89 112-218 43-132 (254)
381 PRK08265 short chain dehydroge 85.9 8.8 0.00019 33.7 10.1 74 113-188 5-90 (261)
382 PF03446 NAD_binding_2: NAD bi 85.8 2.7 5.8E-05 34.4 6.3 113 116-258 3-122 (163)
383 KOG0023 Alcohol dehydrogenase, 85.6 1.9 4.1E-05 39.2 5.5 95 112-217 180-281 (360)
384 cd08301 alcohol_DH_plants Plan 85.6 3.5 7.5E-05 38.5 7.8 99 112-216 186-290 (369)
385 PRK03562 glutathione-regulated 85.5 16 0.00035 36.9 12.8 92 114-215 400-498 (621)
386 COG1568 Predicted methyltransf 85.4 2.9 6.4E-05 37.1 6.4 100 113-215 152-260 (354)
387 cd08236 sugar_DH NAD(P)-depend 85.3 4.7 0.0001 37.0 8.4 94 112-215 158-258 (343)
388 PLN02178 cinnamyl-alcohol dehy 85.3 3.8 8.2E-05 38.5 7.8 95 112-216 177-274 (375)
389 cd08238 sorbose_phosphate_red 84.9 15 0.00033 34.8 11.9 97 112-214 174-287 (410)
390 KOG1227 Putative methyltransfe 84.5 0.63 1.4E-05 41.6 2.0 100 113-217 194-299 (351)
391 PF03686 UPF0146: Uncharacteri 84.4 1.6 3.5E-05 34.0 4.0 90 113-217 13-104 (127)
392 cd08231 MDR_TM0436_like Hypoth 84.3 7.4 0.00016 36.1 9.3 97 112-216 176-281 (361)
393 PRK11154 fadJ multifunctional 84.0 8.5 0.00018 39.5 10.2 138 114-258 309-492 (708)
394 PRK08306 dipicolinate synthase 84.0 12 0.00027 33.9 10.3 90 113-215 151-241 (296)
395 cd08296 CAD_like Cinnamyl alco 83.8 5.1 0.00011 36.7 7.9 96 112-216 162-260 (333)
396 COG4121 Uncharacterized conser 83.7 7.5 0.00016 34.2 8.3 125 113-258 58-231 (252)
397 PF01488 Shikimate_DH: Shikima 83.7 2.2 4.7E-05 33.8 4.7 77 113-191 11-88 (135)
398 PRK10458 DNA cytosine methylas 83.5 45 0.00098 32.4 15.7 129 114-253 88-256 (467)
399 cd05281 TDH Threonine dehydrog 83.3 8 0.00017 35.5 9.0 96 112-215 162-262 (341)
400 COG0771 MurD UDP-N-acetylmuram 83.2 16 0.00035 35.2 10.9 74 114-190 7-81 (448)
401 PF04072 LCM: Leucine carboxyl 83.1 3.2 7E-05 34.6 5.7 80 114-194 79-173 (183)
402 cd01065 NAD_bind_Shikimate_DH 82.8 22 0.00048 28.2 11.4 74 113-190 18-93 (155)
403 PRK10083 putative oxidoreducta 82.7 8 0.00017 35.4 8.8 99 112-216 159-260 (339)
404 PRK11064 wecC UDP-N-acetyl-D-m 82.6 15 0.00033 35.1 10.7 102 115-219 4-123 (415)
405 cd08286 FDH_like_ADH2 formalde 82.4 8.6 0.00019 35.3 8.9 98 112-215 165-266 (345)
406 cd08278 benzyl_alcohol_DH Benz 82.2 6.7 0.00015 36.5 8.1 96 112-216 185-286 (365)
407 PRK05476 S-adenosyl-L-homocyst 82.0 12 0.00027 35.7 9.8 90 112-217 210-301 (425)
408 PRK07326 short chain dehydroge 81.8 12 0.00026 32.1 9.1 75 113-188 5-92 (237)
409 PRK08324 short chain dehydroge 81.4 15 0.00033 37.5 10.9 102 113-216 421-558 (681)
410 PRK15057 UDP-glucose 6-dehydro 81.2 24 0.00052 33.4 11.4 39 116-156 2-41 (388)
411 PLN03209 translocon at the inn 81.0 27 0.00058 34.8 11.9 76 112-188 78-169 (576)
412 PLN00203 glutamyl-tRNA reducta 80.6 5.7 0.00012 39.1 7.1 105 113-219 265-371 (519)
413 cd08265 Zn_ADH3 Alcohol dehydr 80.4 17 0.00036 34.2 10.2 98 112-216 202-308 (384)
414 cd08298 CAD2 Cinnamyl alcohol 80.3 16 0.00034 33.2 9.8 90 112-215 166-256 (329)
415 PF14740 DUF4471: Domain of un 80.3 4.3 9.2E-05 36.6 5.7 67 176-253 220-286 (289)
416 cd05279 Zn_ADH1 Liver alcohol 80.0 9.6 0.00021 35.5 8.4 99 112-216 182-286 (365)
417 KOG1098 Putative SAM-dependent 79.9 1.8 3.8E-05 42.6 3.3 96 108-212 39-155 (780)
418 KOG2671 Putative RNA methylase 79.9 2 4.2E-05 39.4 3.4 77 106-184 201-290 (421)
419 PRK05708 2-dehydropantoate 2-r 79.7 19 0.00041 32.7 10.0 94 115-214 3-103 (305)
420 PRK06500 short chain dehydroge 79.6 33 0.00071 29.5 11.2 74 113-188 5-90 (249)
421 KOG3924 Putative protein methy 79.5 2.6 5.6E-05 39.3 4.1 115 103-219 183-312 (419)
422 PF05050 Methyltransf_21: Meth 79.4 4.1 8.9E-05 32.8 5.1 38 119-156 1-42 (167)
423 TIGR00872 gnd_rel 6-phosphoglu 79.2 19 0.00041 32.6 9.8 115 116-255 2-118 (298)
424 TIGR00692 tdh L-threonine 3-de 79.0 12 0.00027 34.2 8.7 98 112-216 160-262 (340)
425 PRK07576 short chain dehydroge 78.9 29 0.00064 30.4 10.8 73 113-186 8-94 (264)
426 PRK07889 enoyl-(acyl carrier p 78.9 22 0.00048 31.1 9.9 102 113-215 6-145 (256)
427 PRK05808 3-hydroxybutyryl-CoA 78.5 14 0.0003 33.1 8.7 136 115-258 4-185 (282)
428 PRK05396 tdh L-threonine 3-deh 78.5 11 0.00023 34.6 8.1 97 112-216 162-264 (341)
429 PRK12481 2-deoxy-D-gluconate 3 78.5 24 0.00051 30.8 10.0 74 113-188 7-93 (251)
430 PRK11730 fadB multifunctional 78.5 16 0.00034 37.6 9.9 136 115-258 314-495 (715)
431 PRK05867 short chain dehydroge 77.8 31 0.00068 29.9 10.6 75 113-189 8-97 (253)
432 COG0287 TyrA Prephenate dehydr 77.8 13 0.00028 33.5 8.0 89 115-212 4-95 (279)
433 PRK08339 short chain dehydroge 77.6 35 0.00075 30.0 10.9 74 113-188 7-95 (263)
434 PRK09599 6-phosphogluconate de 77.4 29 0.00063 31.4 10.4 115 116-254 2-118 (301)
435 PRK07063 short chain dehydroge 77.2 35 0.00076 29.7 10.8 74 113-188 6-96 (260)
436 PRK06522 2-dehydropantoate 2-r 77.1 30 0.00065 31.1 10.5 93 116-214 2-99 (304)
437 PRK09496 trkA potassium transp 76.6 60 0.0013 31.1 13.0 69 113-185 230-304 (453)
438 PRK06079 enoyl-(acyl carrier p 76.6 36 0.00079 29.6 10.6 102 113-215 6-143 (252)
439 PRK12490 6-phosphogluconate de 76.2 28 0.00061 31.5 10.0 114 116-253 2-117 (299)
440 PRK08594 enoyl-(acyl carrier p 76.2 38 0.00083 29.6 10.7 104 113-216 6-148 (257)
441 TIGR00497 hsdM type I restrict 76.1 25 0.00054 34.5 10.2 103 113-215 217-355 (501)
442 TIGR02441 fa_ox_alpha_mit fatt 76.0 20 0.00043 37.1 9.8 137 114-258 335-517 (737)
443 PF12692 Methyltransf_17: S-ad 76.0 4.3 9.2E-05 32.6 3.9 99 114-216 29-135 (160)
444 cd08240 6_hydroxyhexanoate_dh_ 76.0 14 0.00029 34.1 8.1 95 112-215 174-274 (350)
445 cd05289 MDR_like_2 alcohol deh 75.6 24 0.00053 31.2 9.5 91 112-215 143-238 (309)
446 cd08279 Zn_ADH_class_III Class 75.5 13 0.00029 34.4 7.9 94 112-215 181-282 (363)
447 COG0541 Ffh Signal recognition 75.5 13 0.00029 35.3 7.6 108 112-219 98-225 (451)
448 PRK07533 enoyl-(acyl carrier p 75.4 40 0.00087 29.5 10.6 103 113-215 9-148 (258)
449 KOG2782 Putative SAM dependent 75.4 1.5 3.3E-05 37.4 1.3 97 99-196 30-138 (303)
450 PRK05854 short chain dehydroge 75.2 38 0.00082 30.8 10.7 75 113-189 13-104 (313)
451 PTZ00075 Adenosylhomocysteinas 75.1 21 0.00046 34.6 9.1 89 112-216 252-342 (476)
452 PRK07819 3-hydroxybutyryl-CoA 74.9 13 0.00027 33.6 7.3 97 115-219 6-125 (286)
453 PRK05872 short chain dehydroge 74.6 43 0.00092 30.1 10.8 75 113-189 8-96 (296)
454 cd08291 ETR_like_1 2-enoyl thi 74.5 13 0.00028 33.8 7.4 91 114-215 143-242 (324)
455 PLN02702 L-idonate 5-dehydroge 74.3 23 0.0005 32.8 9.2 99 112-216 180-286 (364)
456 PRK09072 short chain dehydroge 74.3 37 0.0008 29.6 10.1 75 113-189 4-91 (263)
457 PRK06182 short chain dehydroge 74.2 46 0.001 29.3 10.8 72 114-190 3-86 (273)
458 KOG1197 Predicted quinone oxid 74.2 14 0.00031 32.6 6.9 98 110-215 143-245 (336)
459 PRK07417 arogenate dehydrogena 74.1 24 0.00052 31.6 8.9 84 116-211 2-87 (279)
460 PF07279 DUF1442: Protein of u 74.0 25 0.00055 30.1 8.3 98 112-215 40-148 (218)
461 TIGR03589 PseB UDP-N-acetylglu 73.9 54 0.0012 29.9 11.4 76 113-189 3-85 (324)
462 TIGR02437 FadB fatty oxidation 73.6 25 0.00055 36.2 9.8 138 113-258 312-495 (714)
463 KOG1198 Zinc-binding oxidoredu 73.3 7.6 0.00016 36.1 5.5 75 112-187 156-234 (347)
464 cd08260 Zn_ADH6 Alcohol dehydr 73.2 15 0.00032 33.7 7.5 94 112-215 164-264 (345)
465 cd08241 QOR1 Quinone oxidoredu 73.2 22 0.00047 31.7 8.5 93 112-215 138-238 (323)
466 cd08263 Zn_ADH10 Alcohol dehyd 73.1 28 0.0006 32.3 9.4 94 112-215 186-287 (367)
467 PRK12939 short chain dehydroge 73.1 29 0.00062 29.9 9.0 75 113-188 6-94 (250)
468 PRK00045 hemA glutamyl-tRNA re 73.1 17 0.00038 34.7 8.1 70 113-188 181-252 (423)
469 PRK07109 short chain dehydroge 72.9 53 0.0012 30.2 11.1 74 113-188 7-95 (334)
470 PRK07984 enoyl-(acyl carrier p 72.8 52 0.0011 29.0 10.7 75 113-189 5-95 (262)
471 PF11253 DUF3052: Protein of u 72.7 34 0.00075 26.6 8.0 74 176-261 43-116 (127)
472 KOG1209 1-Acyl dihydroxyaceton 72.6 30 0.00066 29.8 8.3 73 112-188 5-91 (289)
473 PRK07502 cyclohexadienyl dehyd 72.6 23 0.0005 32.1 8.5 92 114-214 6-99 (307)
474 PF01262 AlaDh_PNT_C: Alanine 72.2 1.3 2.8E-05 36.5 0.2 95 113-212 19-136 (168)
475 cd08274 MDR9 Medium chain dehy 72.2 58 0.0013 29.7 11.3 92 112-215 176-273 (350)
476 PRK12742 oxidoreductase; Provi 72.1 58 0.0013 27.7 10.7 100 113-216 5-132 (237)
477 cd08282 PFDH_like Pseudomonas 72.0 25 0.00055 32.8 8.9 103 112-215 175-285 (375)
478 COG2933 Predicted SAM-dependen 71.8 21 0.00045 31.7 7.3 86 112-207 210-295 (358)
479 PRK14106 murD UDP-N-acetylmura 71.8 74 0.0016 30.5 12.3 73 113-189 4-79 (450)
480 cd08266 Zn_ADH_like1 Alcohol d 71.3 21 0.00046 32.2 8.1 94 112-215 165-265 (342)
481 PRK09260 3-hydroxybutyryl-CoA 71.3 24 0.00052 31.7 8.3 136 115-257 2-183 (288)
482 cd08243 quinone_oxidoreductase 71.0 31 0.00067 30.8 9.0 95 112-216 141-239 (320)
483 PRK06181 short chain dehydroge 71.0 37 0.00081 29.6 9.3 73 115-188 2-88 (263)
484 cd08270 MDR4 Medium chain dehy 71.0 50 0.0011 29.3 10.4 89 113-215 132-222 (305)
485 PRK06484 short chain dehydroge 71.0 51 0.0011 32.3 11.1 101 113-216 268-401 (520)
486 PF10237 N6-adenineMlase: Prob 70.8 57 0.0012 26.7 10.1 95 113-215 25-123 (162)
487 PRK07806 short chain dehydroge 70.4 66 0.0014 27.6 10.7 102 113-215 5-134 (248)
488 PRK06701 short chain dehydroge 70.4 32 0.0007 30.8 8.9 102 113-216 45-182 (290)
489 cd05288 PGDH Prostaglandin deh 70.3 20 0.00043 32.4 7.6 96 112-215 144-244 (329)
490 PRK08177 short chain dehydroge 70.2 48 0.001 28.1 9.6 69 115-188 2-81 (225)
491 PRK06035 3-hydroxyacyl-CoA deh 70.1 57 0.0012 29.3 10.5 136 115-258 4-188 (291)
492 cd05283 CAD1 Cinnamyl alcohol 69.9 34 0.00073 31.3 9.1 94 112-215 168-263 (337)
493 PF02826 2-Hacid_dh_C: D-isome 69.7 11 0.00023 31.3 5.2 109 113-247 35-144 (178)
494 TIGR01832 kduD 2-deoxy-D-gluco 69.7 56 0.0012 28.1 10.1 73 113-188 4-90 (248)
495 cd08267 MDR1 Medium chain dehy 69.7 48 0.001 29.6 10.0 96 112-215 142-240 (319)
496 PRK09422 ethanol-active dehydr 69.7 23 0.00049 32.3 7.9 95 112-215 161-261 (338)
497 PF02153 PDH: Prephenate dehyd 69.6 8.9 0.00019 34.0 5.0 78 128-215 2-79 (258)
498 PRK06125 short chain dehydroge 69.6 50 0.0011 28.7 9.8 75 113-188 6-91 (259)
499 COG0677 WecC UDP-N-acetyl-D-ma 69.1 48 0.001 31.3 9.5 102 113-220 8-133 (436)
500 PF02558 ApbA: Ketopantoate re 68.8 16 0.00034 29.0 5.9 91 117-217 1-103 (151)
No 1
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=100.00 E-value=3e-51 Score=371.59 Aligned_cols=340 Identities=88% Similarity=1.439 Sum_probs=310.3
Q ss_pred CcccccccccccccccccCCCCCccccCCcccccccccCcccccccCCCcccccccccCccCcCCchhhhhhhhHHhhhh
Q 019479 1 MASSMLSGADSLRLMSGISPTGLGFVGSNLHLKSFTKKGLVSFTSDQNAKFFTPRCSLSSSRPASQPRFIQHKKEAFWFY 80 (340)
Q Consensus 1 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (340)
||+++++|+..+++.....|.++|+.++.++.+++++..+....+........+-++.....+...+++.++..+.+|+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~y 80 (340)
T PLN02490 1 MASSMLNGAENLRLIRGITPKGLGFSGSDLHGRSFPKKLLSSSRRSPRLRTLAARCSSSSSRPASQPRFIQHKKEAFWFY 80 (340)
T ss_pred CCccccccccccccccccCCcccCCCCCcccccccccccccccCcccccceeccccccccCCcccccchhhhhhcceeEc
Confidence 89999999999999888999999999999999999888777666666666677888888888889999999999999999
Q ss_pred hhhhhhhhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCC
Q 019479 81 RFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK 160 (340)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~ 160 (340)
+..+..|+..+.+..|.+.++..+++......++.+|||||||+|.++..+++.+++.+|+++|+|+.|++.|+++....
T Consensus 81 ~~lA~~YD~~~~~~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~ 160 (340)
T PLN02490 81 RFLSIVYDHIINPGHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK 160 (340)
T ss_pred cceeeecCCCeecCcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc
Confidence 99999999988888888888877777665545678999999999999999998877789999999999999999886667
Q ss_pred CcEEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHH
Q 019479 161 ECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEY 240 (340)
Q Consensus 161 ~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (340)
+++++.+|++++++++++||+|+++.+++++++++.+++++.++|||||++++.++..+..+..+...+.|..+.+.+++
T Consensus 161 ~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl 240 (340)
T PLN02490 161 ECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEY 240 (340)
T ss_pred CCeEEeccHHhCCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHH
Confidence 89999999999888888999999999999999999999999999999999998877666556665555666667789999
Q ss_pred HHHHHHCCCcEEEEEEeCCcccccccccceeeeeeEEeecCCCCCCCCCCCcccccccccCChHHHHHHHHHhhhhhhhh
Q 019479 241 IEWFQKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKAEDVQKPVNPFVFALRFILGAIAATYF 320 (340)
Q Consensus 241 ~~~l~~aGF~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (340)
.++++++||+.+++..+.+.|+++.++++..+.+.+.++||..++.++.+|+.+++..+..||+.|+.+|++|+++++++
T Consensus 241 ~~lL~~aGF~~V~i~~i~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (340)
T PLN02490 241 IEWFTKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKAEDVSKPVNPFSFLLRFILGTIAATYY 320 (340)
T ss_pred HHHHHHCCCeEEEEEEcChhhccccccccceeeEEEEEeccccCCCccccCccccccccCcCchhhhHHHHhhhHhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhccccCCCCCC
Q 019479 321 VLVPIYMWLKDQIVPKGQPI 340 (340)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~ 340 (340)
.|.|+|+|.+++|+|+|+||
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~ 340 (340)
T PLN02490 321 VLVPIYMWLKDQIVPKGQPI 340 (340)
T ss_pred hhhhHHHHHhcccccCCCCC
Confidence 99999999999999999997
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.94 E-value=5.8e-25 Score=189.35 Aligned_cols=181 Identities=28% Similarity=0.380 Sum_probs=140.5
Q ss_pred HhhhhhhhhhhhhcccCCC--CchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHH
Q 019479 76 AFWFYRFLSIVYDHVINPG--HWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA 153 (340)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a 153 (340)
....|+..+..|+.+..-- ......++.+....... +|.+|||||||||.++..+++..+.++|+|+|+|+.|++.+
T Consensus 13 v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~-~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a 91 (238)
T COG2226 13 VQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIK-PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVA 91 (238)
T ss_pred HHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCC-CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHH
Confidence 4456666677776643211 11222334444444432 79999999999999999999998889999999999999999
Q ss_pred HHhCCC---CCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCch-hHhh----
Q 019479 154 KQKEPL---KECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTF-WLSR---- 225 (340)
Q Consensus 154 ~~~~~~---~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~---- 225 (340)
+++... .+++|+++|++++|+++++||+|.+.+.|++++|.+.+|+|++|+|||||++++.+...+.. +...
T Consensus 92 ~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~ 171 (238)
T COG2226 92 REKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYIL 171 (238)
T ss_pred HHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHH
Confidence 998654 34899999999999999999999999999999999999999999999999999998766532 1111
Q ss_pred ----------------------HhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 226 ----------------------FFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 226 ----------------------~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
++......+++.+++.++++++||+.+..+..
T Consensus 172 ~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~ 225 (238)
T COG2226 172 YYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENL 225 (238)
T ss_pred HHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEee
Confidence 11111223678999999999999998885554
No 3
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.92 E-value=8.5e-24 Score=178.54 Aligned_cols=227 Identities=32% Similarity=0.463 Sum_probs=160.4
Q ss_pred CCCCccccCCcccccccccCcccc-cccCCCcccccccccCccCcCCchhhhhhhhHHhhhhhhhhhhhhcccCCCC--c
Q 019479 20 PTGLGFVGSNLHLKSFTKKGLVSF-TSDQNAKFFTPRCSLSSSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGH--W 96 (340)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 96 (340)
+.+.+.+++..+..++........ +...++.....-..+.+.......+++++.-...+.+ +...++.+....+ |
T Consensus 11 ~~~l~~p~~~~~ars~~~~~~~s~s~~~~~~~~~~Thfgf~tV~e~eke~~V~~vF~~vA~~--YD~mND~mSlGiHRlW 88 (296)
T KOG1540|consen 11 PLGLRSPGSFLNARSFSSNTLLSSSSPSLSVASKCTHFGFKTVRESEKERLVHHVFESVAKK--YDIMNDAMSLGIHRLW 88 (296)
T ss_pred cccccCCccccccccccccccccccccccccccccccccccccchhhhhhHHHHHHHHHHHH--HHHHHHHhhcchhHHH
Confidence 356666777777777766543333 2223333344444555555555566555544444433 2334444433333 5
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCC------ceEEEEeCCHHHHHHHHHhCC------CCCcEE
Q 019479 97 TEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDA------KNVTILDQSPHQLAKAKQKEP------LKECTI 164 (340)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~------~~v~g~D~s~~~~~~a~~~~~------~~~i~~ 164 (340)
... ....+.. ..+.++||++||||..+..+.+..+. .+|+++|+|++|++.++++.. ..++.+
T Consensus 89 Kd~----~v~~L~p-~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w 163 (296)
T KOG1540|consen 89 KDM----FVSKLGP-GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEW 163 (296)
T ss_pred HHH----hhhccCC-CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEE
Confidence 222 2233332 36799999999999999999998765 799999999999999998852 234889
Q ss_pred EEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCch-hHhh------------------
Q 019479 165 IEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTF-WLSR------------------ 225 (340)
Q Consensus 165 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~------------------ 225 (340)
+++|++++||++++||.+.+.+.+.+++++++.|++++|+|||||++.+.++..... ....
T Consensus 164 ~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~ia 243 (296)
T KOG1540|consen 164 VEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIA 243 (296)
T ss_pred EeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhh
Confidence 999999999999999999999999999999999999999999999999988765542 1111
Q ss_pred -------HhhhHhhcCCCHHHHHHHHHHCCCcEEE
Q 019479 226 -------FFADVWMLFPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 226 -------~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 253 (340)
++-.....+.+.+++..+.+++||..+.
T Consensus 244 gd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 244 GDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 1111122377899999999999999876
No 4
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.92 E-value=5.2e-25 Score=191.65 Aligned_cols=177 Identities=31% Similarity=0.482 Sum_probs=89.2
Q ss_pred hhhhhhhhhhhhcccC------CCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHH
Q 019479 77 FWFYRFLSIVYDHVIN------PGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQ 149 (340)
Q Consensus 77 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~ 149 (340)
...|+..++.|+.... ...|....... ... .++.+|||+|||||.++..+++.. +..+|+|+|+|+.|
T Consensus 10 ~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~----~~~-~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~M 84 (233)
T PF01209_consen 10 RKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKL----LGL-RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGM 84 (233)
T ss_dssp ---------------------------SHHHHH----HT---S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHH
T ss_pred HHHHHHHHHHhCCCccccCCcHHHHHHHHHHhc----cCC-CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHH
Confidence 3566777777765422 12444433322 222 468899999999999999999875 45799999999999
Q ss_pred HHHHHHhC---CCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhH
Q 019479 150 LAKAKQKE---PLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRF 226 (340)
Q Consensus 150 ~~~a~~~~---~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~ 226 (340)
++.|+++. ...+++++++|++++|+++++||+|++.+.+++++|..++++|++|+|||||++++.+...+.....+.
T Consensus 85 L~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~ 164 (233)
T PF01209_consen 85 LEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRA 164 (233)
T ss_dssp HHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHH
T ss_pred HHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhc
Confidence 99999873 345899999999999999999999999999999999999999999999999999999876664322111
Q ss_pred h--------------------------hhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 227 F--------------------------ADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 227 ~--------------------------~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
+ ......+.+.+++.++++++||+.++.+.+.
T Consensus 165 ~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~ 222 (233)
T PF01209_consen 165 LYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLT 222 (233)
T ss_dssp HHHH------------------------------------------------------
T ss_pred eeeeeecccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1 1111225678999999999999998876653
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.91 E-value=3.7e-23 Score=183.95 Aligned_cols=185 Identities=25% Similarity=0.269 Sum_probs=138.9
Q ss_pred hhHHhhhhhhhhhhhhcccCCC--CchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHH
Q 019479 73 KKEAFWFYRFLSIVYDHVINPG--HWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQ 149 (340)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~ 149 (340)
.......|+..+..|+...... ................ .++.+|||+|||+|.++..+++.+ +..+|+|+|+|++|
T Consensus 32 ~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~m 110 (261)
T PLN02233 32 ANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGA-KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQ 110 (261)
T ss_pred HHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCC-CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHH
Confidence 3445567777788887643211 1111222222223333 468899999999999999998875 35799999999999
Q ss_pred HHHHHHhCC------CCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhH
Q 019479 150 LAKAKQKEP------LKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWL 223 (340)
Q Consensus 150 ~~~a~~~~~------~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~ 223 (340)
++.|+++.. ..+++++++|++++|+++++||+|++..++|+++|+..++++++|+|||||++++.+...+..+.
T Consensus 111 l~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~ 190 (261)
T PLN02233 111 LAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPF 190 (261)
T ss_pred HHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHH
Confidence 999987632 35789999999999999999999999999999999999999999999999999998876543221
Q ss_pred hhH-------------------------hhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 224 SRF-------------------------FADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 224 ~~~-------------------------~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
... +......+.+.+++.++++++||++++...+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~ 250 (261)
T PLN02233 191 TTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEIS 250 (261)
T ss_pred HHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcC
Confidence 110 11112347799999999999999999887764
No 6
>PLN02244 tocopherol O-methyltransferase
Probab=99.89 E-value=3.1e-21 Score=178.05 Aligned_cols=160 Identities=24% Similarity=0.290 Sum_probs=126.1
Q ss_pred HHHHhccccCC----CCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCC
Q 019479 100 MRDEALEPADL----FDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAED 171 (340)
Q Consensus 100 ~~~~~l~~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~ 171 (340)
+...++..+.. ..++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.++++.. .++++++++|+.+
T Consensus 101 ~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~ 179 (340)
T PLN02244 101 MIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN 179 (340)
T ss_pred HHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc
Confidence 34445554443 1467899999999999999999986 7899999999999999987632 2479999999999
Q ss_pred CCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCch---------hHhhHhhhHh-----hcCCCH
Q 019479 172 LPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTF---------WLSRFFADVW-----MLFPKE 237 (340)
Q Consensus 172 ~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~---------~~~~~~~~~~-----~~~~~~ 237 (340)
+++++++||+|++..+++|++|...+++++.++|||||++++.+...... .....+.... ..+.+.
T Consensus 180 ~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~ 259 (340)
T PLN02244 180 QPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCST 259 (340)
T ss_pred CCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCH
Confidence 99999999999999999999999999999999999999999976432210 1111111111 123479
Q ss_pred HHHHHHHHHCCCcEEEEEEeCCc
Q 019479 238 EEYIEWFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 238 ~~~~~~l~~aGF~~v~~~~~~~~ 260 (340)
+++.++++++||+++++.++...
T Consensus 260 ~~~~~~l~~aGf~~v~~~d~s~~ 282 (340)
T PLN02244 260 SDYVKLAESLGLQDIKTEDWSEH 282 (340)
T ss_pred HHHHHHHHHCCCCeeEeeeCcHH
Confidence 99999999999999999887643
No 7
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.88 E-value=4.9e-21 Score=167.93 Aligned_cols=181 Identities=26% Similarity=0.355 Sum_probs=135.0
Q ss_pred hhhhhhhhhhhhcccCC--CCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHH
Q 019479 77 FWFYRFLSIVYDHVINP--GHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKA 153 (340)
Q Consensus 77 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a 153 (340)
...|+..+..|+..... -......+..++..... .++.+|||+|||+|.++..+++.. ++.+|+|+|+++.+++.+
T Consensus 8 ~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a 86 (231)
T TIGR02752 8 HKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNV-QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVG 86 (231)
T ss_pred HHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCC-CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence 34555555555542110 11122233444554443 467899999999999999999886 467999999999999999
Q ss_pred HHhC---CCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHh------
Q 019479 154 KQKE---PLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLS------ 224 (340)
Q Consensus 154 ~~~~---~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~------ 224 (340)
+++. ..++++++++|++++++++++||+|++..+++++++...+++++.++|+|||++++.+...+.....
T Consensus 87 ~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~ 166 (231)
T TIGR02752 87 RQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFF 166 (231)
T ss_pred HHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHH
Confidence 8763 2357899999998888888899999999999999999999999999999999999887654432110
Q ss_pred --------------------hHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 225 --------------------RFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 225 --------------------~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
.+.......+.+.+++.++|+++||+++++..+.
T Consensus 167 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 220 (231)
T TIGR02752 167 YFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYT 220 (231)
T ss_pred HHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcc
Confidence 0011222346788999999999999999888764
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.86 E-value=1.5e-20 Score=167.51 Aligned_cols=160 Identities=20% Similarity=0.267 Sum_probs=127.8
Q ss_pred HHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCCCCCCCCc
Q 019479 101 RDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLPFPTDYA 179 (340)
Q Consensus 101 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~~~~~~~f 179 (340)
...++..+.. .++.+|||||||+|..+..+++.+ +.+|+|+|+|+.+++.++++.. ..++.++++|+.+.++++++|
T Consensus 41 ~~~~l~~l~l-~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 41 TTKILSDIEL-NENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHHhCCC-CCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 3445555544 478899999999999999998875 6799999999999999998754 357999999998888888999
Q ss_pred cEEEecCcccccC--CHHHHHHHHHHhcccCcEEEEEccCCCc--hhHhh---HhhhHhhcCCCHHHHHHHHHHCCCcEE
Q 019479 180 DRYVSAGSIEYWP--DPQRGIKEAYRVLKIGGKACVIGPVYPT--FWLSR---FFADVWMLFPKEEEYIEWFQKAGFKDV 252 (340)
Q Consensus 180 D~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~i~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~l~~aGF~~v 252 (340)
|+|++..+++|++ +...++++++++|||||++++.+..... .+... +.......+.+.+++.++|+++||+++
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 198 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNV 198 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCee
Confidence 9999999998886 7789999999999999999998765432 11111 111112235689999999999999999
Q ss_pred EEEEeCCccc
Q 019479 253 KLKRIGPKWY 262 (340)
Q Consensus 253 ~~~~~~~~~~ 262 (340)
+..+....|.
T Consensus 199 ~~~d~~~~~~ 208 (263)
T PTZ00098 199 VAKDISDYWL 208 (263)
T ss_pred eEEeCcHHHH
Confidence 9999876654
No 9
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.86 E-value=6.1e-21 Score=173.23 Aligned_cols=144 Identities=17% Similarity=0.162 Sum_probs=119.1
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
++.+|||||||+|.++..+++. +.+|+|+|+++++++.|+++.. ..+++++++|++++++.+++||+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 5679999999999999998875 7899999999999999997632 247899999999888778899999999999
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEccCCCchh--H----hhHh----h---hHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFW--L----SRFF----A---DVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~----~~~~----~---~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
+|+.|+..+++++.++|||||.+++...+..... . ..++ . ..|..+++.+++.++++++||+++++.
T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 9999999999999999999999999876543210 0 0111 1 123347899999999999999999886
Q ss_pred EeC
Q 019479 256 RIG 258 (340)
Q Consensus 256 ~~~ 258 (340)
.+.
T Consensus 289 G~~ 291 (322)
T PLN02396 289 GFV 291 (322)
T ss_pred eeE
Confidence 653
No 10
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.84 E-value=1.1e-19 Score=161.67 Aligned_cols=147 Identities=23% Similarity=0.271 Sum_probs=114.5
Q ss_pred HhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEE
Q 019479 103 EALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRY 182 (340)
Q Consensus 103 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v 182 (340)
.++..+.. .++.+|||||||+|.++..+++.+|+.+|+|+|+|+.|++.|++ .+++++++|+++++ ++++||+|
T Consensus 20 ~ll~~l~~-~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~----~~~~~~~~d~~~~~-~~~~fD~v 93 (255)
T PRK14103 20 DLLARVGA-ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE----RGVDARTGDVRDWK-PKPDTDVV 93 (255)
T ss_pred HHHHhCCC-CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh----cCCcEEEcChhhCC-CCCCceEE
Confidence 34444443 36789999999999999999999888999999999999999986 36889999998764 56789999
Q ss_pred EecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCc---hhH-hh------Hh---hhH----hhcCCCHHHHHHHHH
Q 019479 183 VSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPT---FWL-SR------FF---ADV----WMLFPKEEEYIEWFQ 245 (340)
Q Consensus 183 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~---~~~-~~------~~---~~~----~~~~~~~~~~~~~l~ 245 (340)
+++.++||++|+..++++++++|||||++++..+.... ... .. +. ... ...+.+.+++.++|+
T Consensus 94 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~ 173 (255)
T PRK14103 94 VSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLT 173 (255)
T ss_pred EEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999987543211 100 00 10 000 112458999999999
Q ss_pred HCCCcEEEEE
Q 019479 246 KAGFKDVKLK 255 (340)
Q Consensus 246 ~aGF~~v~~~ 255 (340)
++||++....
T Consensus 174 ~aGf~v~~~~ 183 (255)
T PRK14103 174 DAGCKVDAWE 183 (255)
T ss_pred hCCCeEEEEe
Confidence 9999855443
No 11
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.84 E-value=2.7e-20 Score=157.65 Aligned_cols=144 Identities=22% Similarity=0.267 Sum_probs=118.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCC--cEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE--CTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
++.+|||||||-|.++..+|+. |..|+|+|+++.+++.|+....... +++.+...+++....++||+|+|..+++|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 7899999999999999999998 8999999999999999998865554 44888888877666689999999999999
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEccCCCchhH------hhHhh-------hHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWL------SRFFA-------DVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~------~~~~~-------~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
++|++.+++.|.+++||||.+++.+.+...... ..++. ..+..+..++++..++..+|+.+.+...+
T Consensus 137 v~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~ 216 (243)
T COG2227 137 VPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGL 216 (243)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecce
Confidence 999999999999999999999999877542110 11111 11223667899999999999998888766
Q ss_pred C
Q 019479 258 G 258 (340)
Q Consensus 258 ~ 258 (340)
.
T Consensus 217 ~ 217 (243)
T COG2227 217 T 217 (243)
T ss_pred E
Confidence 4
No 12
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.83 E-value=2.4e-20 Score=162.74 Aligned_cols=146 Identities=18% Similarity=0.174 Sum_probs=117.8
Q ss_pred CEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 115 MRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
++|||||||+|.++..+++.+++.+|+|+|+|+.+++.++++.. ..+++++..|+...+++ ++||+|++..+++|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 47999999999999999999888899999999999999998743 24689999999665554 57999999999999
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCCccc
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGPKWY 262 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~ 262 (340)
+.++..+++++.++|||||++++.+...... ...........+.+.++|.++++++||++++...+...+.
T Consensus 80 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~~ 150 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIANLL-SAIEHEETTSYLVTREEWAELLARNNLRVVEGVDASLEIA 150 (224)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEEcccccC-ccccccccccccCCHHHHHHHHHHCCCeEEEeEECcHhHh
Confidence 9999999999999999999999987643211 0000000111256889999999999999999999876553
No 13
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.83 E-value=1e-19 Score=161.73 Aligned_cols=144 Identities=21% Similarity=0.336 Sum_probs=114.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCC-CCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLP-FPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~-~~~~~fD~v~~~~ 186 (340)
.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++.. .++++++++|+.+++ +.+++||+|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 35789999999999999999987 7899999999999999998743 256899999997753 5567899999999
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHh-------hh-H---------hhcCCCHHHHHHHHHHCCC
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFF-------AD-V---------WMLFPKEEEYIEWFQKAGF 249 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~-------~~-~---------~~~~~~~~~~~~~l~~aGF 249 (340)
+++|+.++..+++++.++|||||++++...+.........+ .. . .....+++++.++++++||
T Consensus 121 vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf 200 (255)
T PRK11036 121 VLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGW 200 (255)
T ss_pred HHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCC
Confidence 99999999999999999999999998876554321111100 00 0 0123578999999999999
Q ss_pred cEEEEEEe
Q 019479 250 KDVKLKRI 257 (340)
Q Consensus 250 ~~v~~~~~ 257 (340)
++++...+
T Consensus 201 ~~~~~~gi 208 (255)
T PRK11036 201 QIMGKTGV 208 (255)
T ss_pred eEeeeeeE
Confidence 99877665
No 14
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.83 E-value=8e-19 Score=154.43 Aligned_cols=158 Identities=28% Similarity=0.431 Sum_probs=123.8
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCC
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPT 176 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~ 176 (340)
..++..... .++.+|||+|||+|.++..+++..+ ..+++++|+++.+++.++++.. ..++.++.+|+.+.++..
T Consensus 41 ~~~~~~~~~-~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 119 (239)
T PRK00216 41 RKTIKWLGV-RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD 119 (239)
T ss_pred HHHHHHhCC-CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC
Confidence 333444433 2578999999999999999999876 5899999999999999998753 256899999998877777
Q ss_pred CCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHh-h-------------------------HhhhH
Q 019479 177 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLS-R-------------------------FFADV 230 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-~-------------------------~~~~~ 230 (340)
++||+|++..+++++.+...+++++.++|+|||++++.+...+..... . .+...
T Consensus 120 ~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (239)
T PRK00216 120 NSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAES 199 (239)
T ss_pred CCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHH
Confidence 889999999999999999999999999999999998876544321100 0 00011
Q ss_pred hhcCCCHHHHHHHHHHCCCcEEEEEEeCCc
Q 019479 231 WMLFPKEEEYIEWFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 231 ~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 260 (340)
...+++.+++.++|+++||+++++......
T Consensus 200 ~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~ 229 (239)
T PRK00216 200 IRAFPDQEELAAMLEEAGFERVRYRNLTGG 229 (239)
T ss_pred HHhCCCHHHHHHHHHhCCCceeeeeeeecC
Confidence 123567899999999999999999887543
No 15
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.82 E-value=6.4e-20 Score=137.44 Aligned_cols=95 Identities=35% Similarity=0.563 Sum_probs=87.0
Q ss_pred EEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHHHH
Q 019479 118 VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRG 197 (340)
Q Consensus 118 LDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~ 197 (340)
||+|||+|..+..+++. ++.+|+++|+++.+++.++++....++.++.+|++++|+++++||+|++..+++|++++..+
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~ 79 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAA 79 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHH
Confidence 89999999999999998 78999999999999999999988778889999999999999999999999999999999999
Q ss_pred HHHHHHhcccCcEEEE
Q 019479 198 IKEAYRVLKIGGKACV 213 (340)
Q Consensus 198 l~~~~~~LkpgG~l~i 213 (340)
++++.|+|||||++++
T Consensus 80 l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 80 LREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHEEEEEEEEE
T ss_pred HHHHHHHcCcCeEEeC
Confidence 9999999999999976
No 16
>PRK05785 hypothetical protein; Provisional
Probab=99.82 E-value=4.3e-19 Score=154.47 Aligned_cols=171 Identities=20% Similarity=0.193 Sum_probs=122.3
Q ss_pred HhhhhhhhhhhhhcccC------CCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHH
Q 019479 76 AFWFYRFLSIVYDHVIN------PGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQ 149 (340)
Q Consensus 76 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~ 149 (340)
....|+..+..|+.... ...|...+...+.... .++.+|||||||+|..+..+++.+ +.+|+|+|+|++|
T Consensus 11 v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~---~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~M 86 (226)
T PRK05785 11 LQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYC---GRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENM 86 (226)
T ss_pred HHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhc---CCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHH
Confidence 34567777788876421 1124333334333322 246799999999999999999886 5799999999999
Q ss_pred HHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhH-h----
Q 019479 150 LAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWL-S---- 224 (340)
Q Consensus 150 ~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~---- 224 (340)
++.|+++ ..++++|++++|+++++||+|++..+++|++|+..+++++.|+|||.. .+.+...+.... .
T Consensus 87 l~~a~~~-----~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~--~ile~~~p~~~~~~~~~~ 159 (226)
T PRK05785 87 LKMNLVA-----DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV--GFIAMGKPDNVIKRKYLS 159 (226)
T ss_pred HHHHHhc-----cceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCce--EEEEeCCCCcHHHHHHHH
Confidence 9999864 246789999999999999999999999999999999999999999943 222222221111 0
Q ss_pred ---------------------hHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 225 ---------------------RFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 225 ---------------------~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
.++......+.+.+++.++++++| ..++.+.+.
T Consensus 160 ~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~~~~~~~ 213 (226)
T PRK05785 160 FYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA-DIKVYEERG 213 (226)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh-CceEEEEcc
Confidence 112222233778999999999974 656666553
No 17
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.82 E-value=5.3e-19 Score=171.01 Aligned_cols=157 Identities=18% Similarity=0.213 Sum_probs=126.6
Q ss_pred hccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCCCCCCCccE
Q 019479 104 ALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLPFPTDYADR 181 (340)
Q Consensus 104 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~~~~~~fD~ 181 (340)
+++.+.. .++.+|||||||+|..+..+++.+ +.+|+|+|+|+.+++.|+++.. ..+++++++|+...++++++||+
T Consensus 258 l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 335 (475)
T PLN02336 258 FVDKLDL-KPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDV 335 (475)
T ss_pred HHHhcCC-CCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEE
Confidence 3444433 467899999999999999998875 7799999999999999987743 24689999999888888889999
Q ss_pred EEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCc----hhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPT----FWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 182 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
|++..+++|+.|+..++++++++|||||++++.+..... .....++......+.+.+++.++++++||++++++..
T Consensus 336 I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d~ 415 (475)
T PLN02336 336 IYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAEDR 415 (475)
T ss_pred EEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeecc
Confidence 999999999999999999999999999999998754321 2222222222234678999999999999999998887
Q ss_pred CCccc
Q 019479 258 GPKWY 262 (340)
Q Consensus 258 ~~~~~ 262 (340)
...+.
T Consensus 416 ~~~~~ 420 (475)
T PLN02336 416 TDQFL 420 (475)
T ss_pred hHHHH
Confidence 76543
No 18
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.82 E-value=9e-20 Score=150.49 Aligned_cols=133 Identities=30% Similarity=0.390 Sum_probs=105.6
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.++.+|||||||+|.++..+++. +.+++|+|+++.+++. .++.....+....+.++++||+|+++.+++|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~-------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~ 91 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK-------RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHL 91 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH-------TTSEEEEEECHTHHCHSSSEEEEEEESSGGGS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh-------hhhhhhhhhhhhhhccccchhhHhhHHHHhhc
Confidence 47889999999999999999776 5699999999999988 23344444444444577899999999999999
Q ss_pred CCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhH-----hhh--HhhcCCCHHHHHHHHHHCCCcEEE
Q 019479 192 PDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRF-----FAD--VWMLFPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~l~~aGF~~v~ 253 (340)
+|+..+++++.++|||||++++.++.......... ... ....+++.+++.++++++||++++
T Consensus 92 ~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 92 PDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp SHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred ccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999887542111111 011 223467999999999999999876
No 19
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.81 E-value=2.2e-18 Score=154.82 Aligned_cols=147 Identities=29% Similarity=0.426 Sum_probs=116.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
.++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.|+++ ...++++++.+|++++++++++||+|+++.+
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 478999999999999988777764 346899999999999999976 3346889999999988888889999999999
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhH--hhhHh----hcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRF--FADVW----MLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
+++.++...+++++.++|||||++++.+........... ....+ ....+.+++.++|+++||..+++....
T Consensus 156 ~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~~~ 232 (272)
T PRK11873 156 INLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQPKR 232 (272)
T ss_pred ccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEecc
Confidence 999999999999999999999999997654322111110 11111 124578999999999999998875543
No 20
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.81 E-value=2.6e-19 Score=146.66 Aligned_cols=136 Identities=27% Similarity=0.476 Sum_probs=108.3
Q ss_pred CCCCEEEEEcCccchHHHHHH-HhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCC--CCCCCccEEEec
Q 019479 112 DRNMRVVDVGGGTGFTTLGIV-KHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLP--FPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~-~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~--~~~~~fD~v~~~ 185 (340)
+++.+|||+|||+|.++..++ +..++.+++|+|+|+.+++.|+++ ...++++|+++|+.+++ ++ +.||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 367899999999999999999 456789999999999999999985 44568999999998876 44 789999999
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhh------HhhhHhhcCC---CHHHHHHHHHHCC
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSR------FFADVWMLFP---KEEEYIEWFQKAG 248 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~------~~~~~~~~~~---~~~~~~~~l~~aG 248 (340)
.+++++.++..+++++.+.|++||.+++.+.......... .....+.... +.+++..+|++||
T Consensus 81 ~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag 152 (152)
T PF13847_consen 81 GVLHHFPDPEKVLKNIIRLLKPGGILIISDPNHNDELPEQLEELMNLYSEVWSMIYIGNDKEEWKYILEEAG 152 (152)
T ss_dssp STGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHHHHHHHHHHHHHHHHHHHHCC---CCCGHHHHHHHTT
T ss_pred CchhhccCHHHHHHHHHHHcCCCcEEEEEECChHHHHHHHHHHHHHHHHHHhhhhhcccCHHHHHHHHHhcC
Confidence 9999999999999999999999999999877622111111 1112222233 6788888888887
No 21
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.81 E-value=1.2e-18 Score=159.32 Aligned_cols=146 Identities=23% Similarity=0.275 Sum_probs=114.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHH--h-CC-CCCcEEEEcCCCCCCCCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ--K-EP-LKECTIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~--~-~~-~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
++.+|||||||+|.++..+++.. ...|+|+|+|+.++..++. + .. ..++.++.+|++++++ +++||+|++..++
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 67899999999999999999983 3479999999999876543 2 22 3579999999999887 7789999999999
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEccCCCch------hHhhHhhh-HhhcCCCHHHHHHHHHHCCCcEEEEEEeCCc
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTF------WLSRFFAD-VWMLFPKEEEYIEWFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 260 (340)
+|+.|+..++++++++|+|||.+++........ ...++... .....++.+++.++|+++||+++++......
T Consensus 200 ~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~~t 278 (322)
T PRK15068 200 YHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDVSVT 278 (322)
T ss_pred hccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeCCCC
Confidence 999999999999999999999998864322211 11111110 0112458999999999999999999887654
No 22
>PRK08317 hypothetical protein; Provisional
Probab=99.80 E-value=3.9e-18 Score=149.99 Aligned_cols=159 Identities=26% Similarity=0.361 Sum_probs=123.7
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHh--CCCCCcEEEEcCCCCCCCC
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQK--EPLKECTIIEGDAEDLPFP 175 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~--~~~~~i~~~~~d~~~~~~~ 175 (340)
.++..++..... .++.+|||+|||+|.++..+++.+ |..+++++|+++.+++.++++ ....++++..+|+...++.
T Consensus 6 ~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~ 84 (241)
T PRK08317 6 RYRARTFELLAV-QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFP 84 (241)
T ss_pred HHHHHHHHHcCC-CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCC
Confidence 344445555544 468899999999999999999987 668999999999999999887 3346789999999888888
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCch--------hHhhHhhhHh---hcCCCHHHHHHHH
Q 019479 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTF--------WLSRFFADVW---MLFPKEEEYIEWF 244 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~--------~~~~~~~~~~---~~~~~~~~~~~~l 244 (340)
+++||+|++..+++|+.++..+++++.++|||||.+++.++..... .......... .......++.+++
T Consensus 85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 164 (241)
T PRK08317 85 DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLF 164 (241)
T ss_pred CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 8899999999999999999999999999999999999887532110 1111111111 1223467899999
Q ss_pred HHCCCcEEEEEEeC
Q 019479 245 QKAGFKDVKLKRIG 258 (340)
Q Consensus 245 ~~aGF~~v~~~~~~ 258 (340)
+++||+++++....
T Consensus 165 ~~aGf~~~~~~~~~ 178 (241)
T PRK08317 165 REAGLTDIEVEPYT 178 (241)
T ss_pred HHcCCCceeEEEEE
Confidence 99999988776653
No 23
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.80 E-value=7.6e-19 Score=155.32 Aligned_cols=141 Identities=21% Similarity=0.311 Sum_probs=108.0
Q ss_pred CCCCEEEEEcCccchHHHHHHHh--CCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCCCCccEEEec
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKH--VDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~~~fD~v~~~ 185 (340)
.++.+|||||||+|..+..+++. .|+.+++|+|+|+.|++.|+++.. ..+++++++|+.+++++ .+|+|+++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~ 132 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLN 132 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehh
Confidence 36789999999999999988884 478999999999999999998743 24799999999887653 48999999
Q ss_pred CcccccCCH--HHHHHHHHHhcccCcEEEEEccCCC-chhHhhHhhhH------------------------hhcCCCHH
Q 019479 186 GSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYP-TFWLSRFFADV------------------------WMLFPKEE 238 (340)
Q Consensus 186 ~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~-~~~~~~~~~~~------------------------~~~~~~~~ 238 (340)
.++|++++. ..++++++++|||||.+++.+.... ........... .....+.+
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~ 212 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVE 212 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHH
Confidence 999999654 4799999999999999999864322 11111000000 01134789
Q ss_pred HHHHHHHHCCCcEEEE
Q 019479 239 EYIEWFQKAGFKDVKL 254 (340)
Q Consensus 239 ~~~~~l~~aGF~~v~~ 254 (340)
+..++|+++||+.+++
T Consensus 213 ~~~~~L~~aGF~~v~~ 228 (247)
T PRK15451 213 THKARLHKAGFEHSEL 228 (247)
T ss_pred HHHHHHHHcCchhHHH
Confidence 9999999999996543
No 24
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.80 E-value=1.8e-18 Score=156.43 Aligned_cols=164 Identities=20% Similarity=0.245 Sum_probs=119.1
Q ss_pred CCchHHHH-HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHH---hC-CCCCcEEEEcC
Q 019479 94 GHWTEDMR-DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ---KE-PLKECTIIEGD 168 (340)
Q Consensus 94 ~~~~~~~~-~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~---~~-~~~~i~~~~~d 168 (340)
..|...+. ..++..... .++++|||||||+|.++..++... ...|+|+|+|+.++..++. .. ...++.+...+
T Consensus 102 ~e~~s~~~~~~~l~~l~~-~~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ 179 (314)
T TIGR00452 102 SEWRSDIKWDRVLPHLSP-LKGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLG 179 (314)
T ss_pred HHHHHHHHHHHHHHhcCC-CCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECC
Confidence 34444433 234444433 367899999999999999988873 3579999999999876532 22 23568888899
Q ss_pred CCCCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCch------hHhhHhhh-HhhcCCCHHHHH
Q 019479 169 AEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTF------WLSRFFAD-VWMLFPKEEEYI 241 (340)
Q Consensus 169 ~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~ 241 (340)
+++++.. .+||+|++..+++|+.++..+|++++++|||||.|++.+...... ...++... .....++.+++.
T Consensus 180 ie~lp~~-~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~ 258 (314)
T TIGR00452 180 IEQLHEL-YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALK 258 (314)
T ss_pred HHHCCCC-CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHH
Confidence 9888753 479999999999999999999999999999999999875432211 01111100 011245899999
Q ss_pred HHHHHCCCcEEEEEEeCCc
Q 019479 242 EWFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 242 ~~l~~aGF~~v~~~~~~~~ 260 (340)
++|+++||+.+++......
T Consensus 259 ~~L~~aGF~~V~i~~~~~t 277 (314)
T TIGR00452 259 NWLEKVGFENFRILDVLKT 277 (314)
T ss_pred HHHHHCCCeEEEEEeccCC
Confidence 9999999999998877543
No 25
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.79 E-value=1e-17 Score=148.75 Aligned_cols=147 Identities=23% Similarity=0.275 Sum_probs=116.3
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCc
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYA 179 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~f 179 (340)
....+++.+.. .++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++.. ...++++|++.+++++++|
T Consensus 30 ~a~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~--~~~~~~~d~~~~~~~~~~f 104 (251)
T PRK10258 30 SADALLAMLPQ-RKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA--ADHYLAGDIESLPLATATF 104 (251)
T ss_pred HHHHHHHhcCc-cCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC--CCCEEEcCcccCcCCCCcE
Confidence 33444444432 35689999999999999988875 6899999999999999997743 3578999999988888899
Q ss_pred cEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhH-hhHhh-----hHhhcCCCHHHHHHHHHHCCCcE
Q 019479 180 DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWL-SRFFA-----DVWMLFPKEEEYIEWFQKAGFKD 251 (340)
Q Consensus 180 D~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~l~~aGF~~ 251 (340)
|+|+++.++++.+|+..+++++.++|||||.+++..+....... ..... .....+.+.+++.+++...|++.
T Consensus 105 D~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 105 DLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred EEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCcee
Confidence 99999999999999999999999999999999998766543321 11111 11234678999999999998874
No 26
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.78 E-value=7.2e-18 Score=148.34 Aligned_cols=143 Identities=28% Similarity=0.331 Sum_probs=119.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 192 (340)
.+.+|||+|||+|.++..+++..+..+++++|+++.+++.++++.. +++.++.+|+.+.++++++||+|++..++||..
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-ENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-CCCeEEecchhhCCCCCCceeEEEEhhhhhhcc
Confidence 4579999999999999999999888899999999999999998765 488999999998888888999999999999999
Q ss_pred CHHHHHHHHHHhcccCcEEEEEccCCCchhHhh-HhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 193 DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSR-FFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 193 d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
++..+++++.++|||||.+++..+......... ........+.+.+++.+++.++ |..+.+...
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~ 177 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTLEEE 177 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEEEEE
Confidence 999999999999999999999876655432211 1121334577899999999998 987766543
No 27
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.78 E-value=7e-19 Score=149.95 Aligned_cols=139 Identities=22% Similarity=0.280 Sum_probs=112.9
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC-----C----CcEEEEcCCCCCCCCCCCccEEEe
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----K----ECTIIEGDAEDLPFPTDYADRYVS 184 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-----~----~i~~~~~d~~~~~~~~~~fD~v~~ 184 (340)
+++|||+|||+|.++..+++. ++.|+|+|+++.+++.|++.... . ++++.+.|++.. .+.||+|+|
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvc 164 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVC 164 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeee
Confidence 588999999999999999998 89999999999999999987321 1 356677777764 345999999
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCc------hhHhhHhhh-------HhhcCCCHHHHHHHHHHCCCcE
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPT------FWLSRFFAD-------VWMLFPKEEEYIEWFQKAGFKD 251 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~------~~~~~~~~~-------~~~~~~~~~~~~~~l~~aGF~~ 251 (340)
..+++|+.|++.+++.+.+.|||||.+++.+.+... .+....... .|..|.+++++..+++.+++++
T Consensus 165 sevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v 244 (282)
T KOG1270|consen 165 SEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQV 244 (282)
T ss_pred HHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcch
Confidence 999999999999999999999999999998765431 112222222 4666889999999999999987
Q ss_pred EEEEEe
Q 019479 252 VKLKRI 257 (340)
Q Consensus 252 v~~~~~ 257 (340)
..+...
T Consensus 245 ~~v~G~ 250 (282)
T KOG1270|consen 245 NDVVGE 250 (282)
T ss_pred hhhhcc
Confidence 766554
No 28
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.78 E-value=1.7e-17 Score=144.35 Aligned_cols=147 Identities=30% Similarity=0.440 Sum_probs=119.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
++.+|||+|||+|.++..+++..+. .+++++|+++.+++.++++.. ..+++++.+|+.+.++..++||+|++..++++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~ 118 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRN 118 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCC
Confidence 6789999999999999999998765 699999999999999998753 35689999999888777788999999999999
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEccCCCchh---------Hhh-----------------HhhhHhhcCCCHHHHHHHH
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIGPVYPTFW---------LSR-----------------FFADVWMLFPKEEEYIEWF 244 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---------~~~-----------------~~~~~~~~~~~~~~~~~~l 244 (340)
..+...+++++.+.|+|||++++.+...+... ... ++...+..+.+.+++.++|
T Consensus 119 ~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 198 (223)
T TIGR01934 119 VTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAML 198 (223)
T ss_pred cccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999998765433210 000 0011112356889999999
Q ss_pred HHCCCcEEEEEEeCC
Q 019479 245 QKAGFKDVKLKRIGP 259 (340)
Q Consensus 245 ~~aGF~~v~~~~~~~ 259 (340)
+++||++++++.+..
T Consensus 199 ~~aGf~~~~~~~~~~ 213 (223)
T TIGR01934 199 KEAGFEEVRYRSLTF 213 (223)
T ss_pred HHcCCccceeeeeec
Confidence 999999998888753
No 29
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.78 E-value=4.1e-18 Score=151.71 Aligned_cols=162 Identities=22% Similarity=0.227 Sum_probs=113.7
Q ss_pred HHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCC
Q 019479 101 RDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPT 176 (340)
Q Consensus 101 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~ 176 (340)
.+.+++.+.+ ++|.+|||||||.|.++..+++++ +++|+|+.+|+++.+.++++.. ..++++...|..+++
T Consensus 51 ~~~~~~~~~l-~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--- 125 (273)
T PF02353_consen 51 LDLLCEKLGL-KPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--- 125 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----
T ss_pred HHHHHHHhCC-CCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---
Confidence 3455666655 589999999999999999999998 8899999999999999987733 245889999998764
Q ss_pred CCccEEEecCccccc--CCHHHHHHHHHHhcccCcEEEEEccCCCch-----------hHhhHhhhHhhcCCCHHHHHHH
Q 019479 177 DYADRYVSAGSIEYW--PDPQRGIKEAYRVLKIGGKACVIGPVYPTF-----------WLSRFFADVWMLFPKEEEYIEW 243 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~--~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 243 (340)
.+||.|++..+++|+ .+...+++++.+.|||||++++........ +..+++.+.. ..++..++...
T Consensus 126 ~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg-~lps~~~~~~~ 204 (273)
T PF02353_consen 126 GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGG-YLPSLSEILRA 204 (273)
T ss_dssp -S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS----BHHHHHHH
T ss_pred CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCC-CCCCHHHHHHH
Confidence 389999999999999 456799999999999999999875443322 2222221111 24578899999
Q ss_pred HHHCCCcEEEEEEeCCccccccccc
Q 019479 244 FQKAGFKDVKLKRIGPKWYRGVRRH 268 (340)
Q Consensus 244 l~~aGF~~v~~~~~~~~~~~~~~~~ 268 (340)
++++||++.++..++.++....+.+
T Consensus 205 ~~~~~l~v~~~~~~~~hY~~Tl~~W 229 (273)
T PF02353_consen 205 AEDAGLEVEDVENLGRHYARTLRAW 229 (273)
T ss_dssp HHHTT-EEEEEEE-HHHHHHHHHHH
T ss_pred HhcCCEEEEEEEEcCcCHHHHHHHH
Confidence 9999999999999987665444433
No 30
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.77 E-value=4.1e-18 Score=150.12 Aligned_cols=140 Identities=16% Similarity=0.197 Sum_probs=109.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCCCCccEEEec
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~~~fD~v~~~ 185 (340)
.++.+|||+|||+|.++..+++.+ |+.+++|+|+|+.|++.|+++.. ..+++++++|+.+++++ .+|+|++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence 367899999999999999999864 67899999999999999998732 24689999999887654 48999999
Q ss_pred CcccccCC--HHHHHHHHHHhcccCcEEEEEccCCCc-hhHhhHhhhH------------------------hhcCCCHH
Q 019479 186 GSIEYWPD--PQRGIKEAYRVLKIGGKACVIGPVYPT-FWLSRFFADV------------------------WMLFPKEE 238 (340)
Q Consensus 186 ~~l~~~~d--~~~~l~~~~~~LkpgG~l~i~~~~~~~-~~~~~~~~~~------------------------~~~~~~~~ 238 (340)
.++||+.+ ...++++++++|||||.+++.+..... .......... .....+.+
T Consensus 130 ~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~ 209 (239)
T TIGR00740 130 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIE 209 (239)
T ss_pred cchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHH
Confidence 99999864 368999999999999999998764321 1111100000 11245899
Q ss_pred HHHHHHHHCCCcEEE
Q 019479 239 EYIEWFQKAGFKDVK 253 (340)
Q Consensus 239 ~~~~~l~~aGF~~v~ 253 (340)
++.++++++||..++
T Consensus 210 ~~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 210 THKARLKNVGFSHVE 224 (239)
T ss_pred HHHHHHHHcCCchHH
Confidence 999999999999654
No 31
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.77 E-value=3.1e-17 Score=146.21 Aligned_cols=146 Identities=23% Similarity=0.294 Sum_probs=113.1
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccE
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADR 181 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 181 (340)
..++..... .++.+|||||||+|.++..+++.+|+.+|+|+|+|+.+++.++++. +++.++.+|+..+. +.++||+
T Consensus 21 ~~ll~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~--~~~~~~~~d~~~~~-~~~~fD~ 96 (258)
T PRK01683 21 RDLLARVPL-ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL--PDCQFVEADIASWQ-PPQALDL 96 (258)
T ss_pred HHHHhhCCC-cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC--CCCeEEECchhccC-CCCCccE
Confidence 334444443 4678999999999999999999988899999999999999999875 56889999997754 4568999
Q ss_pred EEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhh----------Hhhh---H---hhcCCCHHHHHHHHH
Q 019479 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSR----------FFAD---V---WMLFPKEEEYIEWFQ 245 (340)
Q Consensus 182 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----------~~~~---~---~~~~~~~~~~~~~l~ 245 (340)
|+++.++||++|...+++++.++|||||++++..+......... +... . ...+.+...+.+++.
T Consensus 97 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~ 176 (258)
T PRK01683 97 IFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALA 176 (258)
T ss_pred EEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999998754321111000 0000 0 112457788999999
Q ss_pred HCCCcE
Q 019479 246 KAGFKD 251 (340)
Q Consensus 246 ~aGF~~ 251 (340)
++|+.+
T Consensus 177 ~~g~~v 182 (258)
T PRK01683 177 PAACRV 182 (258)
T ss_pred hCCCce
Confidence 999874
No 32
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.77 E-value=2.2e-18 Score=133.55 Aligned_cols=102 Identities=25% Similarity=0.394 Sum_probs=86.6
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC----CCCCcEEEEcCC-CCCCCCCCCccEEEecC-
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECTIIEGDA-EDLPFPTDYADRYVSAG- 186 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~----~~~~i~~~~~d~-~~~~~~~~~fD~v~~~~- 186 (340)
++.+|||||||+|.++..+++.+++.+|+|+|+|+.+++.++++. ..++++++++|+ .... ..+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD-FLEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-TSSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-cCCCCCEEEECCC
Confidence 478999999999999999999778999999999999999999885 347899999999 4333 345599999999
Q ss_pred ccccc---CCHHHHHHHHHHhcccCcEEEEEc
Q 019479 187 SIEYW---PDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 187 ~l~~~---~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
+++++ ++..++++++.+.|+|||++++..
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 55544 345689999999999999999874
No 33
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.76 E-value=1.2e-17 Score=142.60 Aligned_cols=137 Identities=20% Similarity=0.251 Sum_probs=104.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
++.+|||+|||+|.++..++++ +.+|+|+|+|+.+++.++++. ...++++.+.|+.++++ +++||+|++..++|
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~~~~~~~ 106 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-DGEYDFILSTVVLM 106 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-CCCcCEEEEecchh
Confidence 5689999999999999999987 789999999999999998763 23468889999987765 45799999999999
Q ss_pred ccC--CHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 190 YWP--DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 190 ~~~--d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
+++ +...+++++.++|||||++++........... .......++.+++.+.++ ||++++..+.
T Consensus 107 ~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~---~~~~~~~~~~~el~~~~~--~~~~~~~~~~ 171 (197)
T PRK11207 107 FLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC---TVGFPFAFKEGELRRYYE--GWEMVKYNED 171 (197)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCC---CCCCCCccCHHHHHHHhC--CCeEEEeeCC
Confidence 876 34689999999999999976653222111000 000112357888998887 9998877543
No 34
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=4.6e-17 Score=142.92 Aligned_cols=162 Identities=25% Similarity=0.308 Sum_probs=126.2
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---C-CCcEEEEcCCCCCCCCCC
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---L-KECTIIEGDAEDLPFPTD 177 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~-~~i~~~~~d~~~~~~~~~ 177 (340)
+.+++.+.+ ++|++|||||||.|.+++.+++++ +.+|+|+++|+++.+.+++++. . .+++++..|..+++ +
T Consensus 62 ~~~~~kl~L-~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e 136 (283)
T COG2230 62 DLILEKLGL-KPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---E 136 (283)
T ss_pred HHHHHhcCC-CCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---c
Confidence 344455554 689999999999999999999998 8999999999999999998632 2 47889999987754 4
Q ss_pred CccEEEecCcccccCC--HHHHHHHHHHhcccCcEEEEEccCCCchhH---hhHhhhHhh---cCCCHHHHHHHHHHCCC
Q 019479 178 YADRYVSAGSIEYWPD--PQRGIKEAYRVLKIGGKACVIGPVYPTFWL---SRFFADVWM---LFPKEEEYIEWFQKAGF 249 (340)
Q Consensus 178 ~fD~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~l~~aGF 249 (340)
.||-|++..+++|+.. .+.+++.+.++|+|||++++.....+.... ..++..... ..++..++.+..+++||
T Consensus 137 ~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~ 216 (283)
T COG2230 137 PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGF 216 (283)
T ss_pred ccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCc
Confidence 4999999999999966 789999999999999999987655443211 122222111 14578999999999999
Q ss_pred cEEEEEEeCCccccccccc
Q 019479 250 KDVKLKRIGPKWYRGVRRH 268 (340)
Q Consensus 250 ~~v~~~~~~~~~~~~~~~~ 268 (340)
.+.+.+.+..+..+....+
T Consensus 217 ~v~~~~~~~~hYa~Tl~~W 235 (283)
T COG2230 217 VVLDVESLRPHYARTLRLW 235 (283)
T ss_pred EEehHhhhcHHHHHHHHHH
Confidence 9999998887665444433
No 35
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.74 E-value=7.6e-17 Score=147.18 Aligned_cols=141 Identities=21% Similarity=0.317 Sum_probs=109.6
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
.++.+|||||||+|.++..+++++|+.+++++|. +.+++.++++.. .++++++.+|+.+.+++ .+|+|++..+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~--~~D~v~~~~~ 224 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--EADAVLFCRI 224 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC--CCCEEEeEhh
Confidence 4678999999999999999999999999999998 889999887632 25689999999765544 3799999999
Q ss_pred ccccCCH--HHHHHHHHHhcccCcEEEEEccCCCch--hHhhHhhh----H-----hhcCCCHHHHHHHHHHCCCcEEEE
Q 019479 188 IEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTF--WLSRFFAD----V-----WMLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 188 l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~--~~~~~~~~----~-----~~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
+|++.+. ..++++++++|||||++++.+...... .....+.. . ...+.+.+++.++|+++||+.+++
T Consensus 225 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~~ 304 (306)
T TIGR02716 225 LYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTM 304 (306)
T ss_pred hhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeEe
Confidence 9998765 479999999999999999987543211 11111111 0 112445799999999999998865
Q ss_pred E
Q 019479 255 K 255 (340)
Q Consensus 255 ~ 255 (340)
.
T Consensus 305 ~ 305 (306)
T TIGR02716 305 V 305 (306)
T ss_pred c
Confidence 3
No 36
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.73 E-value=7.2e-17 Score=133.54 Aligned_cols=146 Identities=25% Similarity=0.293 Sum_probs=117.2
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccE
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADR 181 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 181 (340)
..++...+. ....+|.|+|||+|..+..+++++|+..++|+|.|++|++.|+++. ++++|..+|+.++. +..++|+
T Consensus 20 ~dLla~Vp~-~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl--p~~~f~~aDl~~w~-p~~~~dl 95 (257)
T COG4106 20 RDLLARVPL-ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL--PDATFEEADLRTWK-PEQPTDL 95 (257)
T ss_pred HHHHhhCCc-cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC--CCCceecccHhhcC-CCCccch
Confidence 344555554 3678999999999999999999999999999999999999998765 68899999998864 5677999
Q ss_pred EEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHh----------------hcCCCHHHHHHHHH
Q 019479 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVW----------------MLFPKEEEYIEWFQ 245 (340)
Q Consensus 182 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~l~ 245 (340)
++++.++++++|....|.++...|.|||+|.+.-+.+............. ....+...+.++|.
T Consensus 96 lfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa 175 (257)
T COG4106 96 LFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLA 175 (257)
T ss_pred hhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHhC
Confidence 99999999999999999999999999999999876554332222211111 11457888889998
Q ss_pred HCCCcE
Q 019479 246 KAGFKD 251 (340)
Q Consensus 246 ~aGF~~ 251 (340)
..+-++
T Consensus 176 ~~~~rv 181 (257)
T COG4106 176 PLACRV 181 (257)
T ss_pred ccccee
Confidence 876654
No 37
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.73 E-value=3.8e-17 Score=143.45 Aligned_cols=146 Identities=23% Similarity=0.310 Sum_probs=110.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHH---HhCCCCC-cEEEEcCCCCCCCCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK---QKEPLKE-CTIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~---~~~~~~~-i~~~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
.+++|||||||.|.++..++.+ +...|+|+|.++......+ +..+... +......++++|. .+.||.|+|.+|+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVL 192 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeeh
Confidence 7999999999999999999998 3467999999987655433 3343233 3333356678876 7789999999999
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEccCCCchh------HhhHhhhH-hhcCCCHHHHHHHHHHCCCcEEEEEEeCCc
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFW------LSRFFADV-WMLFPKEEEYIEWFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 260 (340)
+|..+|-..|+++++.|+|||.|++.+...+... ..++.... ....++...+..|++++||+.+++......
T Consensus 193 YHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~~T 271 (315)
T PF08003_consen 193 YHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVSPT 271 (315)
T ss_pred hccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecCccC
Confidence 9999999999999999999999998754433211 11111100 011468999999999999999999888643
No 38
>PRK06202 hypothetical protein; Provisional
Probab=99.73 E-value=7.5e-17 Score=141.41 Aligned_cols=144 Identities=15% Similarity=0.120 Sum_probs=110.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC----CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV----DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~----~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
.++.+|||+|||+|.++..+++.. ++.+|+|+|+|+.|++.|+++....++++...+...++..+++||+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 367899999999999988887642 3469999999999999999886666788888887777767789999999999
Q ss_pred ccccCCHH--HHHHHHHHhcccCcEEEEEccCCCchhHhhH----------------hhhHhhcCCCHHHHHHHHHHCCC
Q 019479 188 IEYWPDPQ--RGIKEAYRVLKIGGKACVIGPVYPTFWLSRF----------------FADVWMLFPKEEEYIEWFQKAGF 249 (340)
Q Consensus 188 l~~~~d~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~l~~aGF 249 (340)
+||+++.+ .+++++.++++ |.+++.+...+......+ .......+++.+++.+++++ ||
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf 215 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GW 215 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CC
Confidence 99998864 79999999998 666666655442111000 00112346799999999999 99
Q ss_pred cEEEEEEeC
Q 019479 250 KDVKLKRIG 258 (340)
Q Consensus 250 ~~v~~~~~~ 258 (340)
++.....+.
T Consensus 216 ~~~~~~~~~ 224 (232)
T PRK06202 216 RVERQWPFR 224 (232)
T ss_pred eEEecccee
Confidence 987776654
No 39
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.72 E-value=3.4e-16 Score=131.68 Aligned_cols=126 Identities=24% Similarity=0.268 Sum_probs=105.2
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCCCCCccEEEecCcc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
+++.+|||+|||+|..+..+++..++.+|+++|.++.+++.|+++. ..++++++++|+.+++. .++||+|+++.
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~-- 120 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA-- 120 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc--
Confidence 3588999999999999999998888899999999999999998762 33469999999988765 67899999874
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
+.+...+++++++.|||||++++..... ...++.++.+..|+.+.++..+..
T Consensus 121 --~~~~~~~l~~~~~~LkpGG~lv~~~~~~-----------------~~~~l~~~~~~~~~~~~~~~~~~~ 172 (187)
T PRK00107 121 --VASLSDLVELCLPLLKPGGRFLALKGRD-----------------PEEEIAELPKALGGKVEEVIELTL 172 (187)
T ss_pred --ccCHHHHHHHHHHhcCCCeEEEEEeCCC-----------------hHHHHHHHHHhcCceEeeeEEEec
Confidence 4577899999999999999999885432 345677788888999888877753
No 40
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.72 E-value=7.3e-17 Score=132.47 Aligned_cols=145 Identities=23% Similarity=0.270 Sum_probs=114.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---CCCcE-EEEcCCCCCC-CCCCCccEEEecCc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECT-IIEGDAEDLP-FPTDYADRYVSAGS 187 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~i~-~~~~d~~~~~-~~~~~fD~v~~~~~ 187 (340)
....|||||||||..-...-.. |+.+|+++|.++.|-+.+.+.+. ..++. |+.++.++++ +++++||.|++..+
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred CccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 3456899999999986554433 68999999999999999987643 34566 9999999988 88999999999999
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEccCCCchh-----HhhHhhhHhhcCC----CHHHHHHHHHHCCCcEEEEEEeC
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFW-----LSRFFADVWMLFP----KEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
+....|+.+.|+++.|+|+|||++++.+.....+. ..+.....|+... -..+..+.|+++-|+.++....+
T Consensus 155 LCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd~~e~Leda~f~~~~~kr~~ 234 (252)
T KOG4300|consen 155 LCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRDTGELLEDAEFSIDSCKRFN 234 (252)
T ss_pred EeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEehhHHHHhhhcccccchhhccc
Confidence 99999999999999999999999999988766432 2233334343311 12455678999999998888775
No 41
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.71 E-value=4.7e-17 Score=138.68 Aligned_cols=138 Identities=14% Similarity=0.148 Sum_probs=102.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCC--CcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
++.+|||+|||+|.++..++++ +.+|+|+|+|+.+++.++++.... ++.+...|+...++ +++||+|++..++|+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAAL-NEDYDFIFSTVVFMF 106 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccc-cCCCCEEEEeccccc
Confidence 4579999999999999999986 789999999999999998764322 36677788766554 357999999999998
Q ss_pred cCC--HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 191 WPD--PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 191 ~~d--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
++. ...+++++.++|||||++++.+........ ....+....+.+++.+++. +|+++...+..
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~---~~~~~~~~~~~~el~~~f~--~~~~~~~~e~~ 171 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYP---CHMPFSFTFKEDELRQYYA--DWELLKYNEAV 171 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCC---CCCCcCccCCHHHHHHHhC--CCeEEEeeccc
Confidence 853 458999999999999997665432211100 0011123468899999986 58888777543
No 42
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.70 E-value=5.2e-16 Score=140.66 Aligned_cols=143 Identities=17% Similarity=0.185 Sum_probs=101.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--------CCCcEEEEcCCCCCCCCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------LKECTIIEGDAEDLPFPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--------~~~i~~~~~d~~~~~~~~~~fD~v~~ 184 (340)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.++++.. ..+++|...|++++ +++||+|+|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 5789999999999999999987 7899999999999999998743 23578888888654 578999999
Q ss_pred cCcccccCCHH--HHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHh--------hcCCCHHHHHHHHHHCCCcEEEE
Q 019479 185 AGSIEYWPDPQ--RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVW--------MLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 185 ~~~l~~~~d~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
..+++|+++.. .+++.+.+ +.+||.++...+..............+ ..+.+.+++.++++++||+++..
T Consensus 219 ~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~ 297 (315)
T PLN02585 219 LDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARR 297 (315)
T ss_pred cCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEE
Confidence 99999987653 45666665 455555443322211111111111111 12347999999999999998877
Q ss_pred EEeCCcc
Q 019479 255 KRIGPKW 261 (340)
Q Consensus 255 ~~~~~~~ 261 (340)
+.....+
T Consensus 298 ~~~~~~~ 304 (315)
T PLN02585 298 EMTATQF 304 (315)
T ss_pred EEeecce
Confidence 6665444
No 43
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.70 E-value=1.2e-15 Score=133.90 Aligned_cols=145 Identities=20% Similarity=0.232 Sum_probs=113.0
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCC-CCCCCccEEEecCcc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLP-FPTDYADRYVSAGSI 188 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~-~~~~~fD~v~~~~~l 188 (340)
.++.+|||||||+|.++..+++. +.+++++|+++.+++.++++.. ..+++++..|+.+.+ ...++||+|++..++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 36889999999999999998886 6789999999999999987632 235678888886654 345789999999999
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHh------hHhh-------hHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLS------RFFA-------DVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~------~~~~-------~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
++..++..+++.+.+.|+|||.+++..+........ .+.. ..+..+.+.+++.++++++||++++..
T Consensus 125 ~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 125 EHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 999999999999999999999999886543211100 0000 112336688999999999999999886
Q ss_pred EeC
Q 019479 256 RIG 258 (340)
Q Consensus 256 ~~~ 258 (340)
.+.
T Consensus 205 ~~~ 207 (233)
T PRK05134 205 GLH 207 (233)
T ss_pred eEE
Confidence 544
No 44
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.69 E-value=8e-16 Score=129.16 Aligned_cols=125 Identities=20% Similarity=0.275 Sum_probs=98.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
++.+|||+|||+|..+..++...+..+|+++|.|+.+++.++++ ...++++++++|++++. ..++||+|++.. +
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~- 118 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L- 118 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h-
Confidence 47899999999999999998887778999999999999888765 33357999999998864 357899999875 3
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHH---HHCCCcEEEEEEeCC
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWF---QKAGFKDVKLKRIGP 259 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~aGF~~v~~~~~~~ 259 (340)
.+...+++.+.++|+|||++++..... ...++.++. ...||+.++...+..
T Consensus 119 --~~~~~~~~~~~~~LkpgG~lvi~~~~~-----------------~~~~~~~~~e~~~~~~~~~~~~~~~~~ 172 (181)
T TIGR00138 119 --ASLNVLLELTLNLLKVGGYFLAYKGKK-----------------YLDEIEEAKRKCQVLGVEPLEVPPLTG 172 (181)
T ss_pred --hCHHHHHHHHHHhcCCCCEEEEEcCCC-----------------cHHHHHHHHHhhhhcCceEeeccccCC
Confidence 456678899999999999998874322 233444444 448999998887753
No 45
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.68 E-value=3.6e-15 Score=126.38 Aligned_cols=139 Identities=22% Similarity=0.307 Sum_probs=107.3
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCC
Q 019479 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPF 174 (340)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~ 174 (340)
...+..++..+.. .++.+|||+|||+|.++..+++..|+.+|+++|+++.+++.++++. ...+++++.+|... ++
T Consensus 17 ~~~r~~~~~~l~~-~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~ 94 (187)
T PRK08287 17 EEVRALALSKLEL-HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-EL 94 (187)
T ss_pred HHHHHHHHHhcCC-CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hc
Confidence 3444444455544 3678999999999999999999888889999999999999998763 23568899888743 33
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEE
Q 019479 175 PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 175 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
.++||+|++....+ ....+++++.+.|+|||++++..... .+.+++.+++++.||+.+++
T Consensus 95 -~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~~----------------~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 95 -PGKADAIFIGGSGG---NLTAIIDWSLAHLHPGGRLVLTFILL----------------ENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred -CcCCCEEEECCCcc---CHHHHHHHHHHhcCCCeEEEEEEecH----------------hhHHHHHHHHHHCCCCcceE
Confidence 35799999976654 34678999999999999998864321 24567888999999998777
Q ss_pred EEeC
Q 019479 255 KRIG 258 (340)
Q Consensus 255 ~~~~ 258 (340)
..+.
T Consensus 155 ~~~~ 158 (187)
T PRK08287 155 VQLQ 158 (187)
T ss_pred EEEE
Confidence 6653
No 46
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.68 E-value=1.1e-15 Score=138.21 Aligned_cols=137 Identities=16% Similarity=0.140 Sum_probs=104.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--CCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++... -++++...|+...++ +++||+|++..++++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMF 196 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhh
Confidence 4469999999999999999986 78999999999999999876332 267888888876554 678999999999998
Q ss_pred cC--CHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 191 WP--DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 191 ~~--d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
++ +...+++++.++|+|||++++.......... ........++..++.+.+.. |++++..+.
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~---~~~p~~~~~~~~el~~~~~~--~~i~~~~e~ 260 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYP---CPMPFSFTFKEGELKDYYQD--WEIVKYNEN 260 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCC---CCCCCCcccCHHHHHHHhCC--CEEEEEecc
Confidence 86 3458999999999999997765432211100 01112234678999999964 998887644
No 47
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.67 E-value=1.4e-15 Score=132.18 Aligned_cols=144 Identities=15% Similarity=0.160 Sum_probs=108.5
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC----CCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~----~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++... .++.+.++|+.+++ ++||+|++..+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~ 128 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV 128 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhH
Confidence 36889999999999999999886 67999999999999999987421 37899999998764 78999999999
Q ss_pred ccccCC--HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHh--------hcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 188 IEYWPD--PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVW--------MLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 188 l~~~~d--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
++|++. ...+++++.+++++++.+.+.... ............+ ..+.+.+++.++++++||+++.....
T Consensus 129 l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~ 207 (219)
T TIGR02021 129 LIHYPASDMAKALGHLASLTKERVIFTFAPKT-AWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLV 207 (219)
T ss_pred HHhCCHHHHHHHHHHHHHHhCCCEEEEECCCc-hHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecc
Confidence 988854 457899999999876665543221 1111111111111 12458899999999999999988776
Q ss_pred CCcc
Q 019479 258 GPKW 261 (340)
Q Consensus 258 ~~~~ 261 (340)
...+
T Consensus 208 ~~~~ 211 (219)
T TIGR02021 208 STGF 211 (219)
T ss_pred cccc
Confidence 5444
No 48
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.67 E-value=8.6e-16 Score=143.52 Aligned_cols=151 Identities=21% Similarity=0.160 Sum_probs=115.6
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.++.+|||||||+|.++..+++.+ +.+|+|+|+|+++++.|+++....++++...|..++ +++||.|++..+++|+
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehv 241 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMFEHV 241 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCchhhC
Confidence 478899999999999999999875 679999999999999999886544678888888664 4689999999999998
Q ss_pred CC--HHHHHHHHHHhcccCcEEEEEccCCCch------hHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCCcccc
Q 019479 192 PD--PQRGIKEAYRVLKIGGKACVIGPVYPTF------WLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGPKWYR 263 (340)
Q Consensus 192 ~d--~~~~l~~~~~~LkpgG~l~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~ 263 (340)
.+ ...+++++.++|||||++++........ +..+++.. .....+.+++.+.++ .||++.++..++.++..
T Consensus 242 g~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yifp-~g~lps~~~i~~~~~-~~~~v~d~~~~~~hy~~ 319 (383)
T PRK11705 242 GPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIFP-NGCLPSVRQIAQASE-GLFVMEDWHNFGADYDR 319 (383)
T ss_pred ChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceeeecC-CCcCCCHHHHHHHHH-CCcEEEEEecChhhHHH
Confidence 54 4689999999999999999876443311 11111110 012457788887766 59999999888876654
Q ss_pred ccccc
Q 019479 264 GVRRH 268 (340)
Q Consensus 264 ~~~~~ 268 (340)
....+
T Consensus 320 TL~~W 324 (383)
T PRK11705 320 TLMAW 324 (383)
T ss_pred HHHHH
Confidence 44433
No 49
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.67 E-value=2.3e-17 Score=124.99 Aligned_cols=94 Identities=26% Similarity=0.339 Sum_probs=63.1
Q ss_pred EEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---CCCcEEEEcCCCCCC--CCCCCccEEEecCcccccC
Q 019479 118 VDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECTIIEGDAEDLP--FPTDYADRYVSAGSIEYWP 192 (340)
Q Consensus 118 LDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~i~~~~~d~~~~~--~~~~~fD~v~~~~~l~~~~ 192 (340)
||||||+|.++..+++.+|..+++++|+|+.|++.++++.. ..+......+..+.. ...++||+|++..++||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999999999989999999999999988876632 223333333333321 1225899999999999999
Q ss_pred CHHHHHHHHHHhcccCcEE
Q 019479 193 DPQRGIKEAYRVLKIGGKA 211 (340)
Q Consensus 193 d~~~~l~~~~~~LkpgG~l 211 (340)
+...++++++++|||||+|
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999986
No 50
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.67 E-value=9.8e-17 Score=141.51 Aligned_cols=191 Identities=23% Similarity=0.331 Sum_probs=126.2
Q ss_pred CCCcccccccccCccCcCCchhhhhhhhHHhhhhhhhhhhhhcccCCC--CchHHHH-HHhccccCCCCCCCEEEEEcCc
Q 019479 47 QNAKFFTPRCSLSSSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPG--HWTEDMR-DEALEPADLFDRNMRVVDVGGG 123 (340)
Q Consensus 47 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~l~~~~~~~~~~~vLDiGcG 123 (340)
..+.....|..+.++++.+...+........+.|-...+.....+... ....... ..+...... .+..+|+|||+|
T Consensus 32 ~~~~~~~~~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~d~-~~~~~vvDvGGG 110 (241)
T PF00891_consen 32 ISPELYPAWFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAMAEYSRLNAFDILLEAFDF-SGFKTVVDVGGG 110 (241)
T ss_dssp TCHHHHHGGGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-TTSSEEEEET-T
T ss_pred cCHHHHHHHHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHHHhhhhcchhhhhhccccc-cCccEEEeccCc
Confidence 456667889999998887776665544443332222111111111111 0111111 222333333 466799999999
Q ss_pred cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHH--HHHHHH
Q 019479 124 TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ--RGIKEA 201 (340)
Q Consensus 124 ~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~--~~l~~~ 201 (340)
+|.++..+++++|+.+++.+|+ |.+++.+++ .++++++.+|+. .+++. +|+|++.+++|+++|.+ .+|+++
T Consensus 111 ~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~~~~~iL~~~ 183 (241)
T PF00891_consen 111 SGHFAIALARAYPNLRATVFDL-PEVIEQAKE---ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDEDCVKILRNA 183 (241)
T ss_dssp TSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-HHHHHHHHHHH
T ss_pred chHHHHHHHHHCCCCcceeecc-Hhhhhcccc---ccccccccccHH-hhhcc--ccceeeehhhhhcchHHHHHHHHHH
Confidence 9999999999999999999999 999999998 589999999998 45555 99999999999998876 789999
Q ss_pred HHhcccC--cEEEEEccCCCch----hHh--hHhhhHh------hcCCCHHHHHHHHH
Q 019479 202 YRVLKIG--GKACVIGPVYPTF----WLS--RFFADVW------MLFPKEEEYIEWFQ 245 (340)
Q Consensus 202 ~~~Lkpg--G~l~i~~~~~~~~----~~~--~~~~~~~------~~~~~~~~~~~~l~ 245 (340)
++.|+|| |+|+|.+...+.. ... ..+.+.. -..+|.++|.++|+
T Consensus 184 ~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~~~ll~ 241 (241)
T PF00891_consen 184 AAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEWEALLK 241 (241)
T ss_dssp HHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHHHHHHH
T ss_pred HHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHHHHHhC
Confidence 9999999 9999998654321 111 0111211 22568889988874
No 51
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.67 E-value=1e-15 Score=126.18 Aligned_cols=118 Identities=29% Similarity=0.281 Sum_probs=95.2
Q ss_pred EEEeCCHHHHHHHHHhCC------CCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEE
Q 019479 141 TILDQSPHQLAKAKQKEP------LKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 141 ~g~D~s~~~~~~a~~~~~------~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
+|+|+|+.|++.|+++.. ..+++++++|++++|+++++||+|++..++++++|+..++++++|+|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 489999999999986632 24699999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCchhHhh-------------------------HhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 215 GPVYPTFWLSR-------------------------FFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 215 ~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
+...+...... ++......+.+.+++.++|+++||+.++.....
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~ 149 (160)
T PLN02232 81 DFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEIS 149 (160)
T ss_pred ECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECc
Confidence 77654321111 011111236789999999999999998776653
No 52
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.66 E-value=2.4e-15 Score=124.06 Aligned_cols=141 Identities=18% Similarity=0.289 Sum_probs=112.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-C-CCCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-L-PFPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~-~~~~~~fD~v~~~~~l~ 189 (340)
+++.+|||+|||.|.+...+.+. .+.+++|+|++++.+..+.+ .++.++++|+++ + .+++++||.||++.++.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~----rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ 86 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA----RGVSVIQGDLDEGLADFPDQSFDYVILSQTLQ 86 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH----cCCCEEECCHHHhHhhCCCCCccEEehHhHHH
Confidence 47899999999999999998886 48999999999999888876 467899999965 4 48999999999999999
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHh------------hhHh-----hcCCCHHHHHHHHHHCCCcEE
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFF------------ADVW-----MLFPKEEEYIEWFQKAGFKDV 252 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~------------~~~~-----~~~~~~~~~~~~l~~aGF~~v 252 (340)
++.+++.+|+++.|+ |...+++.++...+...-.+ ...| .++.|..+++++.++.|++++
T Consensus 87 ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~ 163 (193)
T PF07021_consen 87 AVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIE 163 (193)
T ss_pred hHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEE
Confidence 999999999999777 56777777665432211111 1111 125589999999999999999
Q ss_pred EEEEeCCc
Q 019479 253 KLKRIGPK 260 (340)
Q Consensus 253 ~~~~~~~~ 260 (340)
+...+...
T Consensus 164 ~~~~~~~~ 171 (193)
T PF07021_consen 164 ERVFLDGG 171 (193)
T ss_pred EEEEEcCC
Confidence 98887654
No 53
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.66 E-value=2.7e-15 Score=130.81 Aligned_cols=144 Identities=26% Similarity=0.303 Sum_probs=112.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC---CCcEEEEcCCCCCCCC-CCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECTIIEGDAEDLPFP-TDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~---~~i~~~~~d~~~~~~~-~~~fD~v~~~~~l 188 (340)
.+.+|||+|||+|.++..+++. +.+++++|+++.+++.++++... .++++...|+.+.+.. .++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 5789999999999999998886 56799999999999999876332 2588888998766533 3689999999999
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEccCCCchh-Hhh-----Hhh-------hHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFW-LSR-----FFA-------DVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~-----~~~-------~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
+++.++..+++++.++|+|||.+++......... ... ... ..+..+.+.+++.++++++||+++++.
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeee
Confidence 9999999999999999999999988765432111 000 000 011235678999999999999999887
Q ss_pred EeC
Q 019479 256 RIG 258 (340)
Q Consensus 256 ~~~ 258 (340)
...
T Consensus 203 ~~~ 205 (224)
T TIGR01983 203 GLV 205 (224)
T ss_pred eEE
Confidence 653
No 54
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.65 E-value=3.2e-16 Score=119.11 Aligned_cols=93 Identities=28% Similarity=0.405 Sum_probs=77.6
Q ss_pred EEEEcCccchHHHHHHHhC---CCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCCCCCCCccEEEec-Ccccc
Q 019479 117 VVDVGGGTGFTTLGIVKHV---DAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLPFPTDYADRYVSA-GSIEY 190 (340)
Q Consensus 117 vLDiGcG~G~~~~~l~~~~---~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~-~~l~~ 190 (340)
|||+|||+|..+..+++.+ |..+++|+|+|+++++.++++.. ..+++++++|+.+++..+++||+|++. .+++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999986 34899999999999999998863 347999999999988888899999995 55999
Q ss_pred cCCH--HHHHHHHHHhcccCc
Q 019479 191 WPDP--QRGIKEAYRVLKIGG 209 (340)
Q Consensus 191 ~~d~--~~~l~~~~~~LkpgG 209 (340)
+.+. ..+++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 8654 489999999999998
No 55
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.65 E-value=2.4e-15 Score=128.79 Aligned_cols=102 Identities=17% Similarity=0.238 Sum_probs=86.7
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.++.+|||+|||+|.++..+++..++.+++|+|+|+.+++.|+++. +++.+.++|+.+ ++++++||+|++..+++|+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~--~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL--PNINIIQGSLFD-PFKDNFFDLVLTKGVLIHI 118 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC--CCCcEEEeeccC-CCCCCCEEEEEECChhhhC
Confidence 3678999999999999999998878899999999999999999764 457788999887 7788899999999999999
Q ss_pred CC--HHHHHHHHHHhcccCcEEEEEccCC
Q 019479 192 PD--PQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 192 ~d--~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
+. ...+++++.+++ ++.+++.+...
T Consensus 119 ~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 119 NPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred CHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 52 357889999987 46777776543
No 56
>PRK04266 fibrillarin; Provisional
Probab=99.64 E-value=6.3e-15 Score=127.78 Aligned_cols=135 Identities=18% Similarity=0.163 Sum_probs=97.6
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCC----CCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDL----PFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~----~~~~~~fD~v~~~~ 186 (340)
.++.+|||+|||+|.++..+++..+..+|+++|+++.|++.+.+++. ..|+.++.+|+... ++ .++||+|++.
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~i~~d- 148 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDVIYQD- 148 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCEEEEC-
Confidence 47889999999999999999998766799999999999987765533 36899999998642 22 3469999853
Q ss_pred cccccCCH---HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 187 SIEYWPDP---QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 187 ~l~~~~d~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
+.++ ..+++++.++|||||++++.-+.....+..... ...++..++++++||+.++.....+
T Consensus 149 ----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~-------~~~~~~~~~l~~aGF~~i~~~~l~p 213 (226)
T PRK04266 149 ----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPK-------EIFKEEIRKLEEGGFEILEVVDLEP 213 (226)
T ss_pred ----CCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHH-------HHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 3333 346899999999999999942221100000000 0113445999999999999888754
No 57
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.64 E-value=5.9e-15 Score=125.81 Aligned_cols=137 Identities=15% Similarity=0.227 Sum_probs=103.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-C-CCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-L-PFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~-~~~~~~fD~v~~~~~l~~ 190 (340)
++.+|||+|||+|.++..+++.. +..++|+|+++++++.+++ .+++++++|+.+ + ++++++||+|+++.+++|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~----~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~ 87 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA----RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQA 87 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH----cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHc
Confidence 56799999999999999887763 6788999999999999875 357888999865 4 366788999999999999
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEccCCCchhHh-----------------hHhhhHhhcCCCHHHHHHHHHHCCCcEEE
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLS-----------------RFFADVWMLFPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 253 (340)
+.|+..+++++.+.+++ +++..+........ .+.......+.+.+++.++++++||++++
T Consensus 88 ~~d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~ 164 (194)
T TIGR02081 88 TRNPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILD 164 (194)
T ss_pred CcCHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEE
Confidence 99999999999887654 44443322111000 00011112367899999999999999998
Q ss_pred EEEe
Q 019479 254 LKRI 257 (340)
Q Consensus 254 ~~~~ 257 (340)
....
T Consensus 165 ~~~~ 168 (194)
T TIGR02081 165 RAAF 168 (194)
T ss_pred EEEe
Confidence 8776
No 58
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.63 E-value=2.5e-15 Score=128.78 Aligned_cols=124 Identities=22% Similarity=0.115 Sum_probs=99.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCC-CCCC--CCCCCccEEEecC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDA-EDLP--FPTDYADRYVSAG 186 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~-~~~~--~~~~~fD~v~~~~ 186 (340)
++.+|||+|||+|.++..+++..|+.+|+|+|+|+.+++.++++. ...+++++++|+ +.++ +++++||+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 567999999999999999999888889999999999999998763 336799999999 6655 6678899999876
Q ss_pred cccccC--------CHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEE
Q 019479 187 SIEYWP--------DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDV 252 (340)
Q Consensus 187 ~l~~~~--------d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 252 (340)
...+.. ....+++++.++|||||.+++...... ...++.+.+++.|+.+.
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~----------------~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG----------------YAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH----------------HHHHHHHHHHhCccccc
Confidence 543322 135789999999999999998864321 23467778888998654
No 59
>PRK06922 hypothetical protein; Provisional
Probab=99.63 E-value=1.7e-15 Score=146.23 Aligned_cols=106 Identities=26% Similarity=0.398 Sum_probs=91.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--CCcEEEEcCCCCCC--CCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECTIIEGDAEDLP--FPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~i~~~~~d~~~~~--~~~~~fD~v~~~~~l 188 (340)
++.+|||+|||+|..+..+++.+|+.+|+|+|+|+.|++.|+++... .++.++++|..+++ +++++||+|+++.++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 57899999999999999999988999999999999999999987432 45778899998776 778899999999999
Q ss_pred cccC-------------CHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 189 EYWP-------------DPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 189 ~~~~-------------d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
|++. +...++++++++|||||++++.+...
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 8752 34689999999999999999987543
No 60
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.62 E-value=1.8e-14 Score=121.27 Aligned_cols=126 Identities=17% Similarity=0.217 Sum_probs=101.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.++++.. ..+++++.+|+.+.. .++||+|+++..+++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKG--KCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCC
Confidence 45789999999999999999874 389999999999999998732 235788889986643 458999999988876
Q ss_pred cCC---------------------HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCC
Q 019479 191 WPD---------------------PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGF 249 (340)
Q Consensus 191 ~~d---------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 249 (340)
.++ ...+++++.++|||||++++...... ...++.+.+++.||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~----------------~~~~~~~~l~~~gf 158 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN----------------GEPDTFDKLDERGF 158 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC----------------ChHHHHHHHHhCCC
Confidence 643 24679999999999999988864332 36788899999999
Q ss_pred cEEEEEEeC
Q 019479 250 KDVKLKRIG 258 (340)
Q Consensus 250 ~~v~~~~~~ 258 (340)
+...+...+
T Consensus 159 ~~~~~~~~~ 167 (179)
T TIGR00537 159 RYEIVAERG 167 (179)
T ss_pred eEEEEEEee
Confidence 988877765
No 61
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.62 E-value=1.2e-14 Score=128.91 Aligned_cols=146 Identities=32% Similarity=0.404 Sum_probs=109.9
Q ss_pred cCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEc
Q 019479 91 INPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEG 167 (340)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~ 167 (340)
+.++..++.+...++.... ..+.+|||+|||+|.++..+++.++..+++|+|+++.+++.++++. ...++.++++
T Consensus 67 ~~p~~~~~~l~~~~l~~~~--~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~ 144 (251)
T TIGR03534 67 LIPRPDTEELVEAALERLK--KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQS 144 (251)
T ss_pred ccCCCChHHHHHHHHHhcc--cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 3445555566666665543 2457999999999999999999988889999999999999998763 3346899999
Q ss_pred CCCCCCCCCCCccEEEecCcccccCC--------------------------HHHHHHHHHHhcccCcEEEEEccCCCch
Q 019479 168 DAEDLPFPTDYADRYVSAGSIEYWPD--------------------------PQRGIKEAYRVLKIGGKACVIGPVYPTF 221 (340)
Q Consensus 168 d~~~~~~~~~~fD~v~~~~~l~~~~d--------------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 221 (340)
|+.+ ++++++||+|+++-.+....+ ...+++++.++|+|||++++...
T Consensus 145 d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~----- 218 (251)
T TIGR03534 145 DWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG----- 218 (251)
T ss_pred chhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC-----
Confidence 9966 445678999998644332110 13578899999999999988632
Q ss_pred hHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 019479 222 WLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKR 256 (340)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 256 (340)
+...+++.++++++||+.+++..
T Consensus 219 ------------~~~~~~~~~~l~~~gf~~v~~~~ 241 (251)
T TIGR03534 219 ------------YDQGEAVRALFEAAGFADVETRK 241 (251)
T ss_pred ------------ccHHHHHHHHHHhCCCCceEEEe
Confidence 12457788999999999877644
No 62
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.61 E-value=6.4e-16 Score=128.95 Aligned_cols=187 Identities=19% Similarity=0.170 Sum_probs=129.2
Q ss_pred hhhhhhhhhhhcccCCC--CchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q 019479 78 WFYRFLSIVYDHVINPG--HWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ 155 (340)
Q Consensus 78 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~ 155 (340)
..|+.+++.++..+-.. +-......+.+.....- +-.++||+|||||..+..+... ..+.+|+|+|+.|+++|.+
T Consensus 89 ~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g-~F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~e 165 (287)
T COG4976 89 TLFDQYAERFDHILVDKLGYSVPELLAEMIGKADLG-PFRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHE 165 (287)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCC-ccceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHh
Confidence 34556666666543322 22333444445444432 3689999999999999999887 5789999999999999998
Q ss_pred hCCCCCcEEEEcCCCCC-C-CCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhc
Q 019479 156 KEPLKECTIIEGDAEDL-P-FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWML 233 (340)
Q Consensus 156 ~~~~~~i~~~~~d~~~~-~-~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 233 (340)
+-..+. ..+.++..+ + ..++.||+|....|+.++-+.+.++-.+...|+|||.+.++....+..+. -...+....
T Consensus 166 Kg~YD~--L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~-f~l~ps~Ry 242 (287)
T COG4976 166 KGLYDT--LYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGG-FVLGPSQRY 242 (287)
T ss_pred ccchHH--HHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCC-eecchhhhh
Confidence 744332 223333211 1 35678999999999999999999999999999999999998654443321 011111112
Q ss_pred CCCHHHHHHHHHHCCCcEEEEEEeCCcccccccccce
Q 019479 234 FPKEEEYIEWFQKAGFKDVKLKRIGPKWYRGVRRHGL 270 (340)
Q Consensus 234 ~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~~~~~~~ 270 (340)
-.+..-+..+++..||++++++++.-+...+....+.
T Consensus 243 AH~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~pv~G~ 279 (287)
T COG4976 243 AHSESYVRALLAASGLEVIAIEDTTIRRDAGEPVPGI 279 (287)
T ss_pred ccchHHHHHHHHhcCceEEEeecccchhhcCCCCCCc
Confidence 2466778899999999999999987655544444443
No 63
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.61 E-value=5e-15 Score=143.37 Aligned_cols=139 Identities=19% Similarity=0.192 Sum_probs=109.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCC--CCCCCCCCccEEEecCccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAE--DLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~--~~~~~~~~fD~v~~~~~l~ 189 (340)
++.+|||||||+|.++..+++. ..+|+|+|+++.+++.+++... .++++++++|+. .+++++++||+|++..+++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLM 114 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHH
Confidence 5679999999999999999987 5699999999999998876532 367899999995 3567788999999999999
Q ss_pred ccCCH--HHHHHHHHHhcccCcEEEEEccCCCch-hHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 190 YWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTF-WLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 190 ~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
|+++. ..+++++.++|||||++++.+...... ....... ...+++...|.+++.++||......
T Consensus 115 ~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~f~~~~~~~~~~~ 181 (475)
T PLN02336 115 YLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNN--PTHYREPRFYTKVFKECHTRDEDGN 181 (475)
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCC--CCeecChHHHHHHHHHheeccCCCC
Confidence 99874 589999999999999999987543321 0111100 1113467899999999999876443
No 64
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.61 E-value=1.6e-14 Score=124.35 Aligned_cols=137 Identities=14% Similarity=0.069 Sum_probs=102.4
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---------------CCCCcEEEEcCCCCCCCC-C
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---------------PLKECTIIEGDAEDLPFP-T 176 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---------------~~~~i~~~~~d~~~~~~~-~ 176 (340)
++.+|||+|||.|..+..++++ |.+|+|+|+|+.+++.+.+.. ...+++++++|+.+++.. .
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 5679999999999999999998 899999999999999864421 124688999999887632 4
Q ss_pred CCccEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEE
Q 019479 177 DYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
++||.|+-..+++|++.. ...++.+.++|||||++++........... .. ....+.+++.+++.. +|++..+
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~---gp--p~~~~~~eL~~~f~~-~~~i~~~ 185 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA---GP--PFSVSPAEVEALYGG-HYEIELL 185 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC---Cc--CCCCCHHHHHHHhcC-CceEEEE
Confidence 579999999999998644 368999999999999877765433211100 11 124688999998863 5665555
Q ss_pred EEe
Q 019479 255 KRI 257 (340)
Q Consensus 255 ~~~ 257 (340)
...
T Consensus 186 ~~~ 188 (213)
T TIGR03840 186 ESR 188 (213)
T ss_pred eec
Confidence 543
No 65
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.61 E-value=1.2e-14 Score=127.27 Aligned_cols=145 Identities=21% Similarity=0.317 Sum_probs=104.0
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC----CCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~----~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++... .++.+..+|+.. .+++||+|++..+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~fD~v~~~~~ 136 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LLGRFDTVVCLDV 136 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---ccCCcCEEEEcch
Confidence 36789999999999999999887 56799999999999999987322 468899998543 4578999999999
Q ss_pred ccccCCH--HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhH--------hhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 188 IEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADV--------WMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 188 l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
++|+++. ..+++++.+.+++++.+ ...+.............. ...+.+.+++.++++++||++++...+
T Consensus 137 l~~~~~~~~~~~l~~l~~~~~~~~~i-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 215 (230)
T PRK07580 137 LIHYPQEDAARMLAHLASLTRGSLIF-TFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERI 215 (230)
T ss_pred hhcCCHHHHHHHHHHHHhhcCCeEEE-EECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeec
Confidence 9888755 47888888876544433 322211111111111111 112457899999999999999999887
Q ss_pred CCccc
Q 019479 258 GPKWY 262 (340)
Q Consensus 258 ~~~~~ 262 (340)
...++
T Consensus 216 ~~~~~ 220 (230)
T PRK07580 216 SSGFY 220 (230)
T ss_pred cchhH
Confidence 65443
No 66
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.60 E-value=1.7e-14 Score=129.48 Aligned_cols=131 Identities=20% Similarity=0.252 Sum_probs=96.6
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCC---ceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDA---KNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~---~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
...+|||+|||+|.++..+++.++. ..++|+|+|+.+++.|+++. +++.+.++|+.++|+++++||+|++...-
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~--~~~~~~~~d~~~lp~~~~sfD~I~~~~~~- 161 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY--PQVTFCVASSHRLPFADQSLDAIIRIYAP- 161 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC--CCCeEEEeecccCCCcCCceeEEEEecCC-
Confidence 5578999999999999999887653 47999999999999998764 57889999999999999999999986541
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhc--CCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWML--FPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
..++++.|+|||||++++..+.....+..+.. .+.. .... ..-...||+.++.+.+.
T Consensus 162 ------~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~--~~~~~~~~~~----~~~~~~gF~~~~~~~~~ 220 (272)
T PRK11088 162 ------CKAEELARVVKPGGIVITVTPGPRHLFELKGL--IYDEVRLHAP----EAEQLEGFELQHSERLA 220 (272)
T ss_pred ------CCHHHHHhhccCCCEEEEEeCCCcchHHHHHH--hccccccccc----chhhccCCCeeeEEEEE
Confidence 24689999999999999987765433221111 1110 0110 11134689988777764
No 67
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.60 E-value=6.3e-15 Score=131.20 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=86.1
Q ss_pred CCCEEEEEcCccch----HHHHHHHhCC-----CceEEEEeCCHHHHHHHHHhCC-------------------------
Q 019479 113 RNMRVVDVGGGTGF----TTLGIVKHVD-----AKNVTILDQSPHQLAKAKQKEP------------------------- 158 (340)
Q Consensus 113 ~~~~vLDiGcG~G~----~~~~l~~~~~-----~~~v~g~D~s~~~~~~a~~~~~------------------------- 158 (340)
++.+|+|+|||+|. +++.+++..+ +.+|+|+|+|+.+++.|++..-
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 46799999999996 4666666543 4789999999999999997531
Q ss_pred -----CCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHH--HHHHHHHHhcccCcEEEEEc
Q 019479 159 -----LKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 159 -----~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~l~i~~ 215 (340)
..+++|.++|+.+.+.+.++||+|+|.++++|++++. +++++++++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 1368999999988776778999999999999997554 79999999999999999864
No 68
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.59 E-value=9.3e-15 Score=123.23 Aligned_cols=167 Identities=23% Similarity=0.194 Sum_probs=123.1
Q ss_pred cccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCC--ceEEEEeCCHHHHHHHHHhCCC--CCcEE
Q 019479 89 HVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPL--KECTI 164 (340)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~g~D~s~~~~~~a~~~~~~--~~i~~ 164 (340)
..+..++|...-...+...... ...+|||||||.|.....+.+..+. ..+++.|.|+.+++..++.... .++..
T Consensus 49 rFfkdR~wL~~Efpel~~~~~~--~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~a 126 (264)
T KOG2361|consen 49 RFFKDRNWLLREFPELLPVDEK--SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEA 126 (264)
T ss_pred cccchhHHHHHhhHHhhCcccc--ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcc
Confidence 3455667755444444444332 2338999999999999999998876 8999999999999999987432 34555
Q ss_pred EEcCCCC----CCCCCCCccEEEecCcccccCC--HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhh---------
Q 019479 165 IEGDAED----LPFPTDYADRYVSAGSIEYWPD--PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFAD--------- 229 (340)
Q Consensus 165 ~~~d~~~----~~~~~~~fD~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~--------- 229 (340)
.+.|+.. -+...+++|+|++.++|..+.. ...++.+++++|||||.|++-+....+....++...
T Consensus 127 fv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYV 206 (264)
T KOG2361|consen 127 FVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYV 206 (264)
T ss_pred cceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEE
Confidence 5566633 2456789999999999987743 358999999999999999999877665443332211
Q ss_pred ----HhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 230 ----VWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 230 ----~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
+...+++.+++.++++++||..++....
T Consensus 207 RgDGT~~YfF~~eeL~~~f~~agf~~~~~~~~ 238 (264)
T KOG2361|consen 207 RGDGTRAYFFTEEELDELFTKAGFEEVQLEVD 238 (264)
T ss_pred ccCCceeeeccHHHHHHHHHhcccchhcccce
Confidence 1113679999999999999998776544
No 69
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.59 E-value=2.6e-14 Score=112.45 Aligned_cols=110 Identities=24% Similarity=0.314 Sum_probs=86.7
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCC-CCCCCC
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAED-LPFPTD 177 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~-~~~~~~ 177 (340)
..++..... .++.+|||+|||+|.++..+++..|+.+|+++|+++.+++.++++. ...+++++.+|+.. ++...+
T Consensus 9 ~~~~~~~~~-~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (124)
T TIGR02469 9 ALTLSKLRL-RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLP 87 (124)
T ss_pred HHHHHHcCC-CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcC
Confidence 334444433 3567999999999999999999988889999999999999998762 33578888888764 333346
Q ss_pred CccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 178 YADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 178 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
+||+|++..... ....+++++.+.|||||++++..
T Consensus 88 ~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 88 EPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEEe
Confidence 899999976544 34589999999999999998864
No 70
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.59 E-value=4.6e-14 Score=130.77 Aligned_cols=165 Identities=21% Similarity=0.125 Sum_probs=120.0
Q ss_pred hhhhHHhhhhhhhhhhhhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHH
Q 019479 71 QHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQL 150 (340)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~ 150 (340)
+|.-+...||+..-..-...+.++..++.+.+.++.... ++.+|||+|||+|..+..++...|+.+|+++|+|+.++
T Consensus 212 qYIlG~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~~l~---~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~AL 288 (423)
T PRK14966 212 AYILGVREFYGRRFAVNPNVLIPRPETEHLVEAVLARLP---ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPAL 288 (423)
T ss_pred eeEeeeeeecCcEEEeCCCccCCCccHHHHHHHhhhccC---CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 444455566665544545566777888888887776543 45699999999999999999888889999999999999
Q ss_pred HHHHHhCC--CCCcEEEEcCCCCCCC-CCCCccEEEecCccccc---------------------CC----HHHHHHHHH
Q 019479 151 AKAKQKEP--LKECTIIEGDAEDLPF-PTDYADRYVSAGSIEYW---------------------PD----PQRGIKEAY 202 (340)
Q Consensus 151 ~~a~~~~~--~~~i~~~~~d~~~~~~-~~~~fD~v~~~~~l~~~---------------------~d----~~~~l~~~~ 202 (340)
+.|+++.. ..+++++++|+.+..+ ..++||+|+++--...- .| ...+++.+.
T Consensus 289 e~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~ 368 (423)
T PRK14966 289 ETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAP 368 (423)
T ss_pred HHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHH
Confidence 99998742 2368999999865332 24579999996533111 01 125666777
Q ss_pred HhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 203 RVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 203 ~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
+.|+|||.+++.... ...+.+.+++++.||..+++.
T Consensus 369 ~~LkpgG~lilEiG~-----------------~Q~e~V~~ll~~~Gf~~v~v~ 404 (423)
T PRK14966 369 DRLAEGGFLLLEHGF-----------------DQGAAVRGVLAENGFSGVETL 404 (423)
T ss_pred HhcCCCcEEEEEECc-----------------cHHHHHHHHHHHCCCcEEEEE
Confidence 899999998765321 135778899999999877664
No 71
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.58 E-value=2.5e-14 Score=118.27 Aligned_cols=134 Identities=21% Similarity=0.273 Sum_probs=98.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.-.++||+|||.|.++..++.+ ..+++++|+|+.+++.|+++.. .++|++++.|+.+.. +.++||+|+++.+++++
T Consensus 43 ry~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~-P~~~FDLIV~SEVlYYL 119 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARARERLAGLPHVEWIQADVPEFW-PEGRFDLIVLSEVLYYL 119 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGS
T ss_pred ccceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCC-CCCCeeEEEEehHhHcC
Confidence 4578999999999999999998 5799999999999999999955 478999999997643 67899999999999999
Q ss_pred CCH---HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 192 PDP---QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 192 ~d~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
.+. ..+++++.+.|+|||.|++-.... .....|......+.+.++|.+. |..|+...+
T Consensus 120 ~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd-------~~c~~wgh~~ga~tv~~~~~~~-~~~~~~~~~ 180 (201)
T PF05401_consen 120 DDAEDLRAALDRLVAALAPGGHLVFGHARD-------ANCRRWGHAAGAETVLEMLQEH-LTEVERVEC 180 (201)
T ss_dssp SSHHHHHHHHHHHHHTEEEEEEEEEEEE-H-------HHHHHTT-S--HHHHHHHHHHH-SEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEEEEecC-------CcccccCcccchHHHHHHHHHH-hhheeEEEE
Confidence 764 368999999999999999876421 1222344445778888888874 555555554
No 72
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.58 E-value=1.4e-14 Score=123.35 Aligned_cols=105 Identities=22% Similarity=0.224 Sum_probs=85.6
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCC---CCCCCccEEEecC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLP---FPTDYADRYVSAG 186 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~---~~~~~fD~v~~~~ 186 (340)
...+|||||||+|.++..+++.+|...|+|+|+++.+++.|+++. ...|++++++|+.+++ ++++++|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 456999999999999999999999999999999999999998652 3358999999997643 4556899999876
Q ss_pred cccccCCH--------HHHHHHHHHhcccCcEEEEEccC
Q 019479 187 SIEYWPDP--------QRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 187 ~l~~~~d~--------~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
...+.... ..+++++.++|||||.+++....
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 54433221 46899999999999999887643
No 73
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.57 E-value=6.2e-14 Score=126.48 Aligned_cols=167 Identities=23% Similarity=0.273 Sum_probs=117.2
Q ss_pred hhhhhHHhhhhhhhhhhhhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHH
Q 019479 70 IQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQ 149 (340)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~ 149 (340)
.+|..+..+||+..-..-...+.|+..++.+...++.......+..+|||+|||+|..+..++...++.+|+++|+|+.+
T Consensus 71 l~yi~g~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~a 150 (284)
T TIGR00536 71 VAYLLGSKEFYGLEFFVNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDA 150 (284)
T ss_pred HHHHhCcceEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHH
Confidence 34444555555544344445666777788887776654322223369999999999999999999888899999999999
Q ss_pred HHHHHHhC---CC-CCcEEEEcCCCCCCCCCCCccEEEecC-------------cccccC------------CHHHHHHH
Q 019479 150 LAKAKQKE---PL-KECTIIEGDAEDLPFPTDYADRYVSAG-------------SIEYWP------------DPQRGIKE 200 (340)
Q Consensus 150 ~~~a~~~~---~~-~~i~~~~~d~~~~~~~~~~fD~v~~~~-------------~l~~~~------------d~~~~l~~ 200 (340)
++.|+++. .. .+++++++|+.+ +++..+||+|+++- +..|-+ ....++++
T Consensus 151 l~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~ 229 (284)
T TIGR00536 151 LAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIEL 229 (284)
T ss_pred HHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHH
Confidence 99999873 22 348999999865 33445799999862 222221 23467888
Q ss_pred HHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHH-HCCCcEEEE
Q 019479 201 AYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQ-KAGFKDVKL 254 (340)
Q Consensus 201 ~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~aGF~~v~~ 254 (340)
+.+.|+|||++++..... ..+.+.+++. +.||..+++
T Consensus 230 a~~~L~~gG~l~~e~g~~-----------------q~~~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 230 APDYLKPNGFLVCEIGNW-----------------QQKSLKELLRIKFTWYDVEN 267 (284)
T ss_pred HHHhccCCCEEEEEECcc-----------------HHHHHHHHHHhcCCCceeEE
Confidence 999999999998764321 2456667777 468976655
No 74
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.57 E-value=8.5e-14 Score=125.29 Aligned_cols=168 Identities=20% Similarity=0.218 Sum_probs=118.0
Q ss_pred hhhhhHHhhhhhhhhhhhhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHH
Q 019479 70 IQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQ 149 (340)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~ 149 (340)
.+|..+..+|++..-.+....+.++..++.+....+.......++.+|||+|||+|.++..+++..++.+|+++|+|+.+
T Consensus 78 l~yi~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~a 157 (284)
T TIGR03533 78 VAYLTNEAWFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDA 157 (284)
T ss_pred HHHHcCCCeecCcEEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHH
Confidence 44555556666654445556666777776666665542111124579999999999999999999888999999999999
Q ss_pred HHHHHHhCC----CCCcEEEEcCCCCCCCCCCCccEEEecCcc------cccC-----C--------------HHHHHHH
Q 019479 150 LAKAKQKEP----LKECTIIEGDAEDLPFPTDYADRYVSAGSI------EYWP-----D--------------PQRGIKE 200 (340)
Q Consensus 150 ~~~a~~~~~----~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l------~~~~-----d--------------~~~~l~~ 200 (340)
++.|+++.. ..+++++++|+.+ ++++++||+|+++--. .++. + ...++++
T Consensus 158 l~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~ 236 (284)
T TIGR03533 158 LAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAE 236 (284)
T ss_pred HHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHH
Confidence 999998732 2468999999854 2345679999986211 1110 1 1367889
Q ss_pred HHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 019479 201 AYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKR 256 (340)
Q Consensus 201 ~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 256 (340)
+.++|+|||++++.... +.+.+.+++.++||.-.....
T Consensus 237 a~~~L~~gG~l~~e~g~------------------~~~~v~~~~~~~~~~~~~~~~ 274 (284)
T TIGR03533 237 AADHLNENGVLVVEVGN------------------SMEALEEAYPDVPFTWLEFEN 274 (284)
T ss_pred HHHhcCCCCEEEEEECc------------------CHHHHHHHHHhCCCceeeecC
Confidence 99999999999876431 345677888888987654433
No 75
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.57 E-value=1e-13 Score=118.47 Aligned_cols=140 Identities=19% Similarity=0.329 Sum_probs=104.5
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHh---CC-CCCcEEEEcCCCC
Q 019479 97 TEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQK---EP-LKECTIIEGDAED 171 (340)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~---~~-~~~i~~~~~d~~~ 171 (340)
.+.++...+..... .++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.++++ .. ..++.++.+|+.+
T Consensus 25 ~~~~r~~~l~~l~~-~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~ 103 (198)
T PRK00377 25 KEEIRALALSKLRL-RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPE 103 (198)
T ss_pred HHHHHHHHHHHcCC-CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhh
Confidence 34555555555554 478899999999999999988764 457999999999999999876 22 3578899999865
Q ss_pred C-CCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCc
Q 019479 172 L-PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFK 250 (340)
Q Consensus 172 ~-~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~ 250 (340)
. +...+.||+|++.. ...+...+++++.++|||||++++..... .+..+..+.|++.||.
T Consensus 104 ~l~~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~~~----------------~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 104 ILFTINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAILL----------------ETVNNALSALENIGFN 164 (198)
T ss_pred hHhhcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEeecH----------------HHHHHHHHHHHHcCCC
Confidence 3 33346799999854 34467789999999999999998743211 1356778899999994
Q ss_pred EEEEEEe
Q 019479 251 DVKLKRI 257 (340)
Q Consensus 251 ~v~~~~~ 257 (340)
.++..+
T Consensus 165 -~~~~~~ 170 (198)
T PRK00377 165 -LEITEV 170 (198)
T ss_pred -eEEEEE
Confidence 454444
No 76
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.57 E-value=1.9e-13 Score=112.23 Aligned_cols=139 Identities=20% Similarity=0.265 Sum_probs=110.2
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCC-
Q 019479 96 WTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAED- 171 (340)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~- 171 (340)
..+.++...+..+.. .++.+++|||||+|..+..++...|..+|+++|-++++++..+++ +..+|++++.+|+-+
T Consensus 18 TK~EIRal~ls~L~~-~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~ 96 (187)
T COG2242 18 TKEEIRALTLSKLRP-RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA 96 (187)
T ss_pred cHHHHHHHHHHhhCC-CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh
Confidence 345566666666665 588999999999999999999888899999999999999888866 557899999999955
Q ss_pred CCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCC-c
Q 019479 172 LPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGF-K 250 (340)
Q Consensus 172 ~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF-~ 250 (340)
++ ...++|.|+.... . +.+.+++.+...|||||+|++.-.... +.....+++++.|| +
T Consensus 97 L~-~~~~~daiFIGGg-~---~i~~ile~~~~~l~~ggrlV~naitlE----------------~~~~a~~~~~~~g~~e 155 (187)
T COG2242 97 LP-DLPSPDAIFIGGG-G---NIEEILEAAWERLKPGGRLVANAITLE----------------TLAKALEALEQLGGRE 155 (187)
T ss_pred hc-CCCCCCEEEECCC-C---CHHHHHHHHHHHcCcCCeEEEEeecHH----------------HHHHHHHHHHHcCCce
Confidence 33 2226999999887 3 667899999999999999988754321 45567789999999 5
Q ss_pred EEEEEE
Q 019479 251 DVKLKR 256 (340)
Q Consensus 251 ~v~~~~ 256 (340)
++++..
T Consensus 156 i~~v~i 161 (187)
T COG2242 156 IVQVQI 161 (187)
T ss_pred EEEEEe
Confidence 555443
No 77
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.56 E-value=9.7e-14 Score=124.87 Aligned_cols=148 Identities=30% Similarity=0.329 Sum_probs=110.3
Q ss_pred cccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---CCCcEEE
Q 019479 89 HVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECTII 165 (340)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~i~~~ 165 (340)
..+.++..++.+.+.++..... .++.+|||+|||+|..+..++...+..+++++|+|+.+++.++++.. ..++.++
T Consensus 85 ~~lipr~~te~l~~~~~~~~~~-~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~ 163 (275)
T PRK09328 85 GVLIPRPETEELVEWALEALLL-KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFL 163 (275)
T ss_pred CceeCCCCcHHHHHHHHHhccc-cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEE
Confidence 3455666677777766644332 36789999999999999999999888999999999999999998743 3578999
Q ss_pred EcCCCCCCCCCCCccEEEecCccccc--------------------------CCHHHHHHHHHHhcccCcEEEEEccCCC
Q 019479 166 EGDAEDLPFPTDYADRYVSAGSIEYW--------------------------PDPQRGIKEAYRVLKIGGKACVIGPVYP 219 (340)
Q Consensus 166 ~~d~~~~~~~~~~fD~v~~~~~l~~~--------------------------~d~~~~l~~~~~~LkpgG~l~i~~~~~~ 219 (340)
.+|+.+ ++..++||+|+++-..... .....+++++.++|+|||++++....
T Consensus 164 ~~d~~~-~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~-- 240 (275)
T PRK09328 164 QGDWFE-PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY-- 240 (275)
T ss_pred EccccC-cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc--
Confidence 999855 2335789999986332211 11236788888999999999885311
Q ss_pred chhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 220 TFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
...+++.+++++.||..+++.
T Consensus 241 ---------------~~~~~~~~~l~~~gf~~v~~~ 261 (275)
T PRK09328 241 ---------------DQGEAVRALLAAAGFADVETR 261 (275)
T ss_pred ---------------hHHHHHHHHHHhCCCceeEEe
Confidence 124568889999999876663
No 78
>PLN03075 nicotianamine synthase; Provisional
Probab=99.56 E-value=5.1e-14 Score=125.23 Aligned_cols=102 Identities=16% Similarity=0.074 Sum_probs=85.2
Q ss_pred CCCEEEEEcCccchHH-HH-HHHhCCCceEEEEeCCHHHHHHHHHhCC-----CCCcEEEEcCCCCCCCCCCCccEEEec
Q 019479 113 RNMRVVDVGGGTGFTT-LG-IVKHVDAKNVTILDQSPHQLAKAKQKEP-----LKECTIIEGDAEDLPFPTDYADRYVSA 185 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~-~~-l~~~~~~~~v~g~D~s~~~~~~a~~~~~-----~~~i~~~~~d~~~~~~~~~~fD~v~~~ 185 (340)
++++|+|||||.|.++ .. ++..+|+.+++++|.++++++.|++... .++++|..+|+.+.....+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 6789999999988443 33 3346788999999999999999998763 256999999997754234679999999
Q ss_pred Cccccc--CCHHHHHHHHHHhcccCcEEEEEc
Q 019479 186 GSIEYW--PDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 186 ~~l~~~--~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
+++++ .++.++++++.+.|+|||.+++-.
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 88888 588899999999999999998875
No 79
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.55 E-value=1e-13 Score=122.60 Aligned_cols=169 Identities=23% Similarity=0.170 Sum_probs=118.4
Q ss_pred hhhhhhHHhhhhhhhhhhhhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHH
Q 019479 69 FIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH 148 (340)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~ 148 (340)
..+|.-+..+|++..-......+.++..++.+.+.++........+.+|||+|||+|.++..+++..++.+|+++|+|+.
T Consensus 42 Pl~yi~g~~~f~g~~~~v~~~vf~pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~ 121 (251)
T TIGR03704 42 PLEHVLGWAEFCGLRIAVDPGVFVPRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPA 121 (251)
T ss_pred CHHHhcccCeEcCeEEEECCCCcCCCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHH
Confidence 44555566666554444445555566667777776665443222346899999999999999998888889999999999
Q ss_pred HHHHHHHhCCCCCcEEEEcCCCCC-C-CCCCCccEEEecCcccc------cC----------------C----HHHHHHH
Q 019479 149 QLAKAKQKEPLKECTIIEGDAEDL-P-FPTDYADRYVSAGSIEY------WP----------------D----PQRGIKE 200 (340)
Q Consensus 149 ~~~~a~~~~~~~~i~~~~~d~~~~-~-~~~~~fD~v~~~~~l~~------~~----------------d----~~~~l~~ 200 (340)
+++.|+++....+++++++|+.+. + ...++||+|+++--... ++ | ...+++.
T Consensus 122 al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~ 201 (251)
T TIGR03704 122 AVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAG 201 (251)
T ss_pred HHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHH
Confidence 999999886544568899998652 2 11357999998743321 10 1 1367777
Q ss_pred HHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEE
Q 019479 201 AYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 201 ~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
+.++|||||++++..... ..+++.+++++.||...-.
T Consensus 202 a~~~L~~gG~l~l~~~~~-----------------~~~~v~~~l~~~g~~~~~~ 238 (251)
T TIGR03704 202 APDWLAPGGHLLVETSER-----------------QAPLAVEAFARAGLIARVA 238 (251)
T ss_pred HHHhcCCCCEEEEEECcc-----------------hHHHHHHHHHHCCCCceee
Confidence 889999999998774321 3456788899999985433
No 80
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.55 E-value=2.2e-14 Score=120.03 Aligned_cols=137 Identities=20% Similarity=0.237 Sum_probs=95.4
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
++.++||+|||.|+.+..++++ |..|+++|.|+..++.+++.+. .-.++..+.|+.+..++ +.||+|++..++++
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~f 106 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMF 106 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGG
T ss_pred CCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEecc
Confidence 5679999999999999999998 9999999999999998876532 22378899999877654 67999999888988
Q ss_pred cCCH--HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 191 WPDP--QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 191 ~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
++.. ..+++.+.+.++|||++++............ ......+.+.++.+.+. ||++++..+-
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~---~~~~f~~~~~EL~~~y~--dW~il~y~E~ 170 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCP---SPFPFLLKPGELREYYA--DWEILKYNED 170 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--S---S--S--B-TTHHHHHTT--TSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCC---CCCCcccCHHHHHHHhC--CCeEEEEEcc
Confidence 8544 4789999999999999888643221111000 01111335677777775 7998876543
No 81
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.54 E-value=1.5e-13 Score=118.60 Aligned_cols=137 Identities=18% Similarity=0.161 Sum_probs=101.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---------------CCCCcEEEEcCCCCCCCC-C
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---------------PLKECTIIEGDAEDLPFP-T 176 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---------------~~~~i~~~~~d~~~~~~~-~ 176 (340)
++.+|||+|||.|..+..++++ |.+|+|+|+|+.+++.+.+.. ...++++.++|+.+++.. .
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 5679999999999999999997 899999999999999875321 124688999999887533 2
Q ss_pred CCccEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEE
Q 019479 177 DYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
+.||.|+-..++++++.. ...++.+.++|||||++++........... .. ....+.+++.+++.. +|++..+
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~---gP--p~~~~~~el~~~~~~-~~~i~~~ 188 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELA---GP--PFSVSDEEVEALYAG-CFEIELL 188 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCC---CC--CCCCCHHHHHHHhcC-CceEEEe
Confidence 579999999999999644 378999999999999755543222111110 11 124689999999853 3776666
Q ss_pred EEe
Q 019479 255 KRI 257 (340)
Q Consensus 255 ~~~ 257 (340)
...
T Consensus 189 ~~~ 191 (218)
T PRK13255 189 ERQ 191 (218)
T ss_pred eec
Confidence 554
No 82
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.53 E-value=1.5e-13 Score=118.08 Aligned_cols=100 Identities=23% Similarity=0.252 Sum_probs=79.6
Q ss_pred CCCCCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC--------CCCCCc
Q 019479 109 DLFDRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP--------FPTDYA 179 (340)
Q Consensus 109 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~--------~~~~~f 179 (340)
...+++.+|||||||+|.++..+++..+ ..+|+|+|+++ + ...++++++++|+.+.+ +.+++|
T Consensus 47 ~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 47 KLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-------DPIVGVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred ccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-------cCCCCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 3345788999999999999999999863 47999999988 2 12257899999998743 567789
Q ss_pred cEEEecCcccccCCH-----------HHHHHHHHHhcccCcEEEEEcc
Q 019479 180 DRYVSAGSIEYWPDP-----------QRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 180 D~v~~~~~l~~~~d~-----------~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
|+|++..+.++..++ ..+|+++.++|||||.+++...
T Consensus 119 D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 119 QVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 999998766655432 3589999999999999998654
No 83
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.53 E-value=2.2e-13 Score=131.71 Aligned_cols=169 Identities=22% Similarity=0.193 Sum_probs=127.9
Q ss_pred hhhhhhHHhhhhhhhhhhhhcccCCCCchHHHHHHhccccCC-----------------------CCCCCEEEEEcCccc
Q 019479 69 FIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADL-----------------------FDRNMRVVDVGGGTG 125 (340)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~vLDiGcG~G 125 (340)
..+|.-+..+||+..-.+-..++.|++.++.+++.++..... ..++.+|||+|||+|
T Consensus 71 PlqYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG 150 (506)
T PRK01544 71 PIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSG 150 (506)
T ss_pred CHHHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchh
Confidence 567777888899888888889999999999999887654320 113568999999999
Q ss_pred hHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCCCCccEEEecCcccc-----------
Q 019479 126 FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPTDYADRYVSAGSIEY----------- 190 (340)
Q Consensus 126 ~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~----------- 190 (340)
..+..++..+|+.+|+++|+|+.+++.|+++.. ..+++++.+|+.+ .+..++||+|+++--...
T Consensus 151 ~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi~~~~~~~l~~~v 229 (506)
T PRK01544 151 CIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYISHSEKSEMAIET 229 (506)
T ss_pred HHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCCCchhhhhcCchh
Confidence 999999988888999999999999999998732 2468899999754 234567999999532211
Q ss_pred ---cC--------C----HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 191 ---WP--------D----PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 191 ---~~--------d----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
-+ | ...+++++.++|+|||.+++... +...+.+.+++.+.||..+++.
T Consensus 230 ~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig-----------------~~q~~~v~~~~~~~g~~~~~~~ 292 (506)
T PRK01544 230 INYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG-----------------FKQEEAVTQIFLDHGYNIESVY 292 (506)
T ss_pred hccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC-----------------CchHHHHHHHHHhcCCCceEEE
Confidence 11 0 12467788899999999987522 1245678889999999876653
No 84
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.53 E-value=1.8e-13 Score=126.04 Aligned_cols=148 Identities=20% Similarity=0.151 Sum_probs=110.7
Q ss_pred hhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcE
Q 019479 87 YDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECT 163 (340)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~ 163 (340)
++..+.+......+...++..... +++.+|||+|||+|.++..++.. +.+++|+|+++.|++.++++. ...++.
T Consensus 157 ~R~~~~~~~l~~~la~~~~~l~~~-~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~ 233 (329)
T TIGR01177 157 RRPFFKPGSMDPKLARAMVNLARV-TEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFF 233 (329)
T ss_pred cCCccCCCCCCHHHHHHHHHHhCC-CCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCe
Confidence 333445555555566666555544 47889999999999999887665 789999999999999988763 334578
Q ss_pred EEEcCCCCCCCCCCCccEEEecCcccc--------cCC-HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcC
Q 019479 164 IIEGDAEDLPFPTDYADRYVSAGSIEY--------WPD-PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLF 234 (340)
Q Consensus 164 ~~~~d~~~~~~~~~~fD~v~~~~~l~~--------~~d-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 234 (340)
+.++|+.++++.+++||+|+++-.+.. ..+ ...+++++.++|||||++++..+..
T Consensus 234 ~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~---------------- 297 (329)
T TIGR01177 234 VKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR---------------- 297 (329)
T ss_pred EEecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC----------------
Confidence 999999998877889999999633221 111 3589999999999999998876532
Q ss_pred CCHHHHHHHHHHCCCcEEEEEEe
Q 019479 235 PKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 235 ~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
.++.++++++|| ++.....
T Consensus 298 ---~~~~~~~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 298 ---IDLESLAEDAFR-VVKRFEV 316 (329)
T ss_pred ---CCHHHHHhhcCc-chheeee
Confidence 245578999999 7666554
No 85
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.52 E-value=2.4e-13 Score=123.47 Aligned_cols=167 Identities=20% Similarity=0.226 Sum_probs=114.9
Q ss_pred hhhhhHHhhhhhhhhhhhhcccCCCCchHHHHHHhccc-cCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHH
Q 019479 70 IQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEP-ADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH 148 (340)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~ 148 (340)
.+|..+..+|++..-.+-...+.++..++.+....+.. ... ....+|||+|||+|.++..++..+|+.+|+++|+|+.
T Consensus 90 l~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~-~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~ 168 (307)
T PRK11805 90 AAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWLED-PPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPD 168 (307)
T ss_pred HHHHcCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHHhcc-CCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHH
Confidence 45555555666544444455666777666666655432 221 1236899999999999999999988899999999999
Q ss_pred HHHHHHHhCC----CCCcEEEEcCCCCCCCCCCCccEEEecCcc-------------cccCC------------HHHHHH
Q 019479 149 QLAKAKQKEP----LKECTIIEGDAEDLPFPTDYADRYVSAGSI-------------EYWPD------------PQRGIK 199 (340)
Q Consensus 149 ~~~~a~~~~~----~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l-------------~~~~d------------~~~~l~ 199 (340)
+++.|+++.. ..+++++++|+.+ .++.++||+|+++--. +|-+. ...+++
T Consensus 169 al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~ 247 (307)
T PRK11805 169 ALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILA 247 (307)
T ss_pred HHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHH
Confidence 9999998742 2458999999854 2245679999986211 11111 136789
Q ss_pred HHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 019479 200 EAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKR 256 (340)
Q Consensus 200 ~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 256 (340)
++.+.|+|||++++.... +.+.+.+++.+.||.-.+...
T Consensus 248 ~a~~~L~pgG~l~~E~g~------------------~~~~~~~~~~~~~~~~~~~~~ 286 (307)
T PRK11805 248 EAPDYLTEDGVLVVEVGN------------------SRVHLEEAYPDVPFTWLEFEN 286 (307)
T ss_pred HHHHhcCCCCEEEEEECc------------------CHHHHHHHHhhCCCEEEEecC
Confidence 999999999999875321 234566777778876655443
No 86
>PRK14968 putative methyltransferase; Provisional
Probab=99.51 E-value=4.8e-13 Score=113.24 Aligned_cols=127 Identities=25% Similarity=0.351 Sum_probs=97.8
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---CCC--cEEEEcCCCCCCCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKE--CTIIEGDAEDLPFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~--i~~~~~d~~~~~~~~~~fD~v~~~~ 186 (340)
.++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++.. ..+ +.++.+|+.+ ++.+++||+|+++.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~ 98 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNP 98 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECC
Confidence 36789999999999999999988 7899999999999999987632 122 7888888865 33455899999876
Q ss_pred cccccC---------------------CHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHH
Q 019479 187 SIEYWP---------------------DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQ 245 (340)
Q Consensus 187 ~l~~~~---------------------d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 245 (340)
.+.... ....+++++.++|||||.+++..... ...+++.++++
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~----------------~~~~~l~~~~~ 162 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL----------------TGEDEVLEYLE 162 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc----------------CCHHHHHHHHH
Confidence 554311 12457999999999999998775421 24567889999
Q ss_pred HCCCcEEEEEEe
Q 019479 246 KAGFKDVKLKRI 257 (340)
Q Consensus 246 ~aGF~~v~~~~~ 257 (340)
++||+++.+...
T Consensus 163 ~~g~~~~~~~~~ 174 (188)
T PRK14968 163 KLGFEAEVVAEE 174 (188)
T ss_pred HCCCeeeeeeec
Confidence 999998766543
No 87
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.51 E-value=7.8e-14 Score=115.91 Aligned_cols=163 Identities=21% Similarity=0.234 Sum_probs=114.9
Q ss_pred hhhhhhhhhhhhcccCCCCchHHHHHHhccccCCCC-CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q 019479 77 FWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFD-RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ 155 (340)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~ 155 (340)
.+|++.++..|.+...-......+.+..++.+..+. .+.-|||||||+|..+..+.+. +...+|+|+|+.|++.|.+
T Consensus 13 lfYnd~eA~kYt~nsri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541|consen 13 LFYNDTEAPKYTQNSRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE 90 (270)
T ss_pred eeechhhhhhccccceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH
Confidence 345555666666533333444555555566555432 3678999999999999888776 7899999999999999997
Q ss_pred hCCCCCcEEEEcCC-CCCCCCCCCccEEEecCcccccC-------CHH----HHHHHHHHhcccCcEEEEEccCCCchhH
Q 019479 156 KEPLKECTIIEGDA-EDLPFPTDYADRYVSAGSIEYWP-------DPQ----RGIKEAYRVLKIGGKACVIGPVYPTFWL 223 (340)
Q Consensus 156 ~~~~~~i~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~-------d~~----~~l~~~~~~LkpgG~l~i~~~~~~~~~~ 223 (340)
+.-. -.++.+|+ +.+||..++||.||+...+.++- ++. .++..++.+|++|++.++........
T Consensus 91 ~e~e--gdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~-- 166 (270)
T KOG1541|consen 91 RELE--GDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEA-- 166 (270)
T ss_pred hhhh--cCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchH--
Confidence 4221 35777888 56899999999999988877663 222 56888999999999998875432211
Q ss_pred hhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 224 SRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
..+.+.+....|||.---+.+.
T Consensus 167 ------------q~d~i~~~a~~aGF~GGlvVd~ 188 (270)
T KOG1541|consen 167 ------------QIDMIMQQAMKAGFGGGLVVDW 188 (270)
T ss_pred ------------HHHHHHHHHHhhccCCceeeec
Confidence 3455666777889885444443
No 88
>PTZ00146 fibrillarin; Provisional
Probab=99.51 E-value=1.2e-12 Score=116.03 Aligned_cols=136 Identities=16% Similarity=0.053 Sum_probs=95.1
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC-CCCCcEEEEcCCCCC---CCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE-PLKECTIIEGDAEDL---PFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~-~~~~i~~~~~d~~~~---~~~~~~fD~v~~~~ 186 (340)
.++.+|||+|||+|.++..+++... ...|+++|+++.+.+...+.. ..+|+.++..|+... ....++||+|++..
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv 210 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADV 210 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeC
Confidence 5788999999999999999999873 468999999987543333221 226899999998542 22345799999876
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHH----HHHHHHCCCcEEEEEEeCCc
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEY----IEWFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~aGF~~v~~~~~~~~ 260 (340)
. ..++...++.++.++|||||.++|........ .-.++++. .++|+++||+.++...+.+.
T Consensus 211 a--~pdq~~il~~na~r~LKpGG~~vI~ika~~id-----------~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py 275 (293)
T PTZ00146 211 A--QPDQARIVALNAQYFLKNGGHFIISIKANCID-----------STAKPEVVFASEVQKLKKEGLKPKEQLTLEPF 275 (293)
T ss_pred C--CcchHHHHHHHHHHhccCCCEEEEEEeccccc-----------cCCCHHHHHHHHHHHHHHcCCceEEEEecCCc
Confidence 4 23233456678999999999999852211100 01122222 37899999999999887643
No 89
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.50 E-value=2.1e-13 Score=117.12 Aligned_cols=108 Identities=17% Similarity=0.170 Sum_probs=85.0
Q ss_pred HHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhCC---C-CCcEEEEcCCCCCCCC
Q 019479 101 RDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---L-KECTIIEGDAEDLPFP 175 (340)
Q Consensus 101 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~---~-~~i~~~~~d~~~~~~~ 175 (340)
...+++.+.. .++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.|+++.. . .+++++.+|..+....
T Consensus 61 ~~~~~~~l~~-~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~ 139 (205)
T PRK13944 61 VAMMCELIEP-RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK 139 (205)
T ss_pred HHHHHHhcCC-CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc
Confidence 3444444443 4678999999999999999988764 4699999999999999987632 2 3588999999764444
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
..+||+|++..++++++ +++.+.|+|||+|++..
T Consensus 140 ~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 140 HAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred CCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 57899999998887664 57889999999998753
No 90
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=4.7e-13 Score=118.69 Aligned_cols=138 Identities=25% Similarity=0.278 Sum_probs=101.2
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcE----EEEcCCCCC
Q 019479 97 TEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECT----IIEGDAEDL 172 (340)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~----~~~~d~~~~ 172 (340)
+..+.-+.++... .++.+|||+|||+|.+++..++. +..+|+|+|++|.+++.++++...+++. ....+....
T Consensus 148 TT~lcL~~Le~~~--~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~ 224 (300)
T COG2264 148 TTSLCLEALEKLL--KKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV 224 (300)
T ss_pred hHHHHHHHHHHhh--cCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh
Confidence 3444444444443 38999999999999999998887 4567999999999999999886555554 222222222
Q ss_pred CCCCCCccEEEecCcccccCCH-HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcE
Q 019479 173 PFPTDYADRYVSAGSIEYWPDP-QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKD 251 (340)
Q Consensus 173 ~~~~~~fD~v~~~~~l~~~~d~-~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 251 (340)
+ ..++||+|+++=.. ++ ..+...+.+.+||||+++++..... ..+.+.+.++++||++
T Consensus 225 ~-~~~~~DvIVANILA----~vl~~La~~~~~~lkpgg~lIlSGIl~~----------------q~~~V~~a~~~~gf~v 283 (300)
T COG2264 225 P-ENGPFDVIVANILA----EVLVELAPDIKRLLKPGGRLILSGILED----------------QAESVAEAYEQAGFEV 283 (300)
T ss_pred c-ccCcccEEEehhhH----HHHHHHHHHHHHHcCCCceEEEEeehHh----------------HHHHHHHHHHhCCCeE
Confidence 2 33589999987422 33 3678899999999999999975432 2567788999999999
Q ss_pred EEEEEeC
Q 019479 252 VKLKRIG 258 (340)
Q Consensus 252 v~~~~~~ 258 (340)
+++....
T Consensus 284 ~~~~~~~ 290 (300)
T COG2264 284 VEVLERE 290 (300)
T ss_pred eEEEecC
Confidence 9887764
No 91
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.50 E-value=3.1e-13 Score=112.62 Aligned_cols=103 Identities=28% Similarity=0.383 Sum_probs=83.4
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
+..+|||+|||+|..+..+++..|..+|+++|+++.+++.++++. ...+++++..|..+. .++++||+|+++--++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~-~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA-LPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT-CCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc-ccccceeEEEEccchh
Confidence 578999999999999999999988889999999999999998763 233488999998652 3468899999997766
Q ss_pred ccCC-----HHHHHHHHHHhcccCcEEEEEcc
Q 019479 190 YWPD-----PQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 190 ~~~d-----~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.-.+ .+.+++++.+.|||||.++++..
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 5543 35889999999999999977644
No 92
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.49 E-value=1.2e-12 Score=119.08 Aligned_cols=103 Identities=16% Similarity=0.200 Sum_probs=79.8
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhCCC--C--CcEEEEcCCCC-CCCCCC----CccE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL--K--ECTIIEGDAED-LPFPTD----YADR 181 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~--~--~i~~~~~d~~~-~~~~~~----~fD~ 181 (340)
.++.+|||+|||+|..+..+++..+ +.+|+++|+|++|++.++++... + ++.++++|+.+ +++... ...+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 3568999999999999999999875 58999999999999999877422 3 35678999976 333332 2345
Q ss_pred EEecCcccccCCH--HHHHHHHHHhcccCcEEEEE
Q 019479 182 YVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 182 v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~ 214 (340)
+++..++++++.. ..+|++++++|+|||.+++.
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 5556778877543 47899999999999999874
No 93
>PRK14967 putative methyltransferase; Provisional
Probab=99.49 E-value=2.6e-12 Score=111.95 Aligned_cols=127 Identities=20% Similarity=0.194 Sum_probs=93.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--CCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
.++.+|||+|||+|.++..+++. +..+++++|+++.+++.++++... .++.++.+|+.+. +++++||+|+++-...
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPFDVVVSNPPYV 112 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCeeEEEECCCCC
Confidence 36789999999999999998876 345999999999999999876432 2577888998653 4567899999974333
Q ss_pred ccCC---------------------HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCC
Q 019479 190 YWPD---------------------PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAG 248 (340)
Q Consensus 190 ~~~d---------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 248 (340)
.... .+.+++++.++|||||++++...... +..++.+.+++.|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~----------------~~~~~~~~l~~~g 176 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS----------------GVERTLTRLSEAG 176 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc----------------CHHHHHHHHHHCC
Confidence 2111 24578899999999999988644321 3345667778888
Q ss_pred CcEEEEEE
Q 019479 249 FKDVKLKR 256 (340)
Q Consensus 249 F~~v~~~~ 256 (340)
|.......
T Consensus 177 ~~~~~~~~ 184 (223)
T PRK14967 177 LDAEVVAS 184 (223)
T ss_pred CCeEEEEe
Confidence 87554443
No 94
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.49 E-value=5.7e-13 Score=114.96 Aligned_cols=109 Identities=23% Similarity=0.247 Sum_probs=86.6
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCC
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPF 174 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~ 174 (340)
.+...++..+.. .++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.++++. ...+++++++|....+.
T Consensus 63 ~~~~~~~~~l~~-~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~ 141 (212)
T PRK13942 63 HMVAIMCELLDL-KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE 141 (212)
T ss_pred HHHHHHHHHcCC-CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC
Confidence 344555555544 4789999999999999999988753 479999999999999999873 34679999999976555
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEE
Q 019479 175 PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 175 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
..++||+|++.....++ .+.+.+.|||||++++.
T Consensus 142 ~~~~fD~I~~~~~~~~~------~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 142 ENAPYDRIYVTAAGPDI------PKPLIEQLKDGGIMVIP 175 (212)
T ss_pred cCCCcCEEEECCCcccc------hHHHHHhhCCCcEEEEE
Confidence 66789999998776544 34677899999999875
No 95
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.48 E-value=9.3e-14 Score=124.18 Aligned_cols=206 Identities=18% Similarity=0.134 Sum_probs=139.4
Q ss_pred CCCcccccccccCccCcCCchhhhhhhhHHhhhhhhhhhhhhcccCCCC--chHHHHHHhccccCCCCCCCEEEEEcCcc
Q 019479 47 QNAKFFTPRCSLSSSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGH--WTEDMRDEALEPADLFDRNMRVVDVGGGT 124 (340)
Q Consensus 47 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~vLDiGcG~ 124 (340)
.+.+.++.|..+.+.+..+...+...++...+-|....+.....++..+ .......++++...-+..-...+|+|+|.
T Consensus 109 ~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGi 188 (342)
T KOG3178|consen 109 TSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGI 188 (342)
T ss_pred cccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcH
Confidence 4567788899998888877777766666333444433333333222211 12223334444443344568899999999
Q ss_pred chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHH--HHHHHHH
Q 019479 125 GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ--RGIKEAY 202 (340)
Q Consensus 125 G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~--~~l~~~~ 202 (340)
|..+..+...||..+.+-+|+ +..++.++. .. ++|+.+.+|..+. .|. -|+|++.+++|||.|.+ ++|++|+
T Consensus 189 G~v~k~ll~~fp~ik~infdl-p~v~~~a~~-~~-~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwtDedcvkiLknC~ 262 (342)
T KOG3178|consen 189 GRVLKNLLSKYPHIKGINFDL-PFVLAAAPY-LA-PGVEHVAGDMFQD-TPK--GDAIWMKWILHDWTDEDCVKILKNCK 262 (342)
T ss_pred hHHHHHHHHhCCCCceeecCH-HHHHhhhhh-hc-CCcceeccccccc-CCC--cCeEEEEeecccCChHHHHHHHHHHH
Confidence 999999999988766666665 555555544 33 6688999999764 333 47999999999999886 8999999
Q ss_pred HhcccCcEEEEEccCCCc-hhHhh------HhhhHh-------hcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 203 RVLKIGGKACVIGPVYPT-FWLSR------FFADVW-------MLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 203 ~~LkpgG~l~i~~~~~~~-~~~~~------~~~~~~-------~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
..|+|||++++.+.+.+. ..... ...+.. -..++.+++..++.++||.+.++.-..
T Consensus 263 ~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~~ 332 (342)
T KOG3178|consen 263 KSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVALTA 332 (342)
T ss_pred HhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEecc
Confidence 999999999999875553 11100 001111 114588999999999999988776553
No 96
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.47 E-value=5.8e-13 Score=117.96 Aligned_cols=123 Identities=25% Similarity=0.294 Sum_probs=90.6
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+++....++. +...+...+.+||+|+++...+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~~l~~A~~n~~~~~~~----~~~~~~~~~~~fD~Vvani~~~-- 190 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQAVEAARENAELNGVE----LNVYLPQGDLKADVIVANILAN-- 190 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCC----ceEEEccCCCCcCEEEEcCcHH--
Confidence 47889999999999999887765 3456999999999999999875433331 0001111122799999875432
Q ss_pred CCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 192 PDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
....+++++.++|||||++++.+.... ..+++.+.+++.||++++....+
T Consensus 191 -~~~~l~~~~~~~LkpgG~lilsgi~~~----------------~~~~v~~~l~~~Gf~~~~~~~~~ 240 (250)
T PRK00517 191 -PLLELAPDLARLLKPGGRLILSGILEE----------------QADEVLEAYEEAGFTLDEVLERG 240 (250)
T ss_pred -HHHHHHHHHHHhcCCCcEEEEEECcHh----------------hHHHHHHHHHHCCCEEEEEEEeC
Confidence 234788999999999999999865321 35678889999999998877754
No 97
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.47 E-value=2.9e-12 Score=109.37 Aligned_cols=113 Identities=19% Similarity=0.252 Sum_probs=85.8
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCC-CCCC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAED-LPFP 175 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~-~~~~ 175 (340)
....++..+.. .++.+|||+|||+|.++..+++..++.+|+++|+++.+++.++++. ...+++++.+|+.+ ++..
T Consensus 28 v~~~l~~~l~~-~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~ 106 (196)
T PRK07402 28 VRLLLISQLRL-EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQL 106 (196)
T ss_pred HHHHHHHhcCC-CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhC
Confidence 33344555543 4778999999999999999988777889999999999999998763 33578999999854 2222
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
...+|.+++.. ..+...+++++.++|+|||++++....
T Consensus 107 ~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 107 APAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred CCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 23467766532 235678999999999999999988653
No 98
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.46 E-value=1.1e-12 Score=113.64 Aligned_cols=108 Identities=22% Similarity=0.255 Sum_probs=84.8
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFP 175 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~ 175 (340)
....+++.+.. .++.+|||||||+|.++..+++..+ ..+|+++|+++.+++.|++++ ...+++++++|..+....
T Consensus 65 ~~~~~~~~l~~-~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~ 143 (215)
T TIGR00080 65 MVAMMTELLEL-KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP 143 (215)
T ss_pred HHHHHHHHhCC-CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc
Confidence 33444555544 4789999999999999999998853 367999999999999999773 346799999999765434
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEE
Q 019479 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
..+||+|++.....++ ...+.+.|||||++++.
T Consensus 144 ~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 144 LAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMP 176 (215)
T ss_pred cCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEE
Confidence 5689999988765544 35678899999999875
No 99
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.6e-12 Score=116.35 Aligned_cols=165 Identities=24% Similarity=0.241 Sum_probs=118.5
Q ss_pred hhhhHHhhhhhhhhhhhhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHH
Q 019479 71 QHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQL 150 (340)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~ 150 (340)
+|.-+..+|+...-.....++.|+..++.+.+.++...... ..+|||+|||+|..++.++...|..+|+|+|+|+.++
T Consensus 70 ~yi~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~~~~--~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al 147 (280)
T COG2890 70 AYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALALLLQL--DKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDAL 147 (280)
T ss_pred hHhhccCeecceeeeeCCCceecCCchHHHHHHHHHhhhhc--CCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHH
Confidence 44444456666666677778888888888888866333321 1289999999999999999998889999999999999
Q ss_pred HHHHHhCCC---CCcEEEEcCCCCCCCCCCCccEEEecCcccccC-----------CH--------------HHHHHHHH
Q 019479 151 AKAKQKEPL---KECTIIEGDAEDLPFPTDYADRYVSAGSIEYWP-----------DP--------------QRGIKEAY 202 (340)
Q Consensus 151 ~~a~~~~~~---~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-----------d~--------------~~~l~~~~ 202 (340)
+.|++++.. .++.++.+|+.+ + ..++||+|++|--.-.-+ +| ..++.++.
T Consensus 148 ~~A~~Na~~~~l~~~~~~~~dlf~-~-~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~ 225 (280)
T COG2890 148 ALARENAERNGLVRVLVVQSDLFE-P-LRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAP 225 (280)
T ss_pred HHHHHHHHHcCCccEEEEeeeccc-c-cCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhH
Confidence 999987443 345566667654 2 233899999973322111 12 16778888
Q ss_pred HhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCC-CcEEEEEE
Q 019479 203 RVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAG-FKDVKLKR 256 (340)
Q Consensus 203 ~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-F~~v~~~~ 256 (340)
+.|+|||.+++.... ...+.+.+++.+.| |..+....
T Consensus 226 ~~l~~~g~l~le~g~-----------------~q~~~v~~~~~~~~~~~~v~~~~ 263 (280)
T COG2890 226 DILKPGGVLILEIGL-----------------TQGEAVKALFEDTGFFEIVETLK 263 (280)
T ss_pred HHcCCCcEEEEEECC-----------------CcHHHHHHHHHhcCCceEEEEEe
Confidence 999999998876432 24678899999999 55544443
No 100
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.45 E-value=1.9e-12 Score=117.03 Aligned_cols=123 Identities=20% Similarity=0.234 Sum_probs=92.5
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC----CCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~----~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
.++.+|||+|||+|.++..+++. +..+|+++|+++.+++.|+++... .++.+...+.. ...+++||+|+++..
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~~~~~~fDlVvan~~ 234 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--QPIEGKADVIVANIL 234 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--cccCCCceEEEEecC
Confidence 36789999999999999888765 456999999999999999987432 23455555532 234568999999765
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
.+ ....++.++.++|||||++++...... ..+++.+.+++. |+.+++...
T Consensus 235 ~~---~l~~ll~~~~~~LkpgG~li~sgi~~~----------------~~~~v~~~~~~~-f~~~~~~~~ 284 (288)
T TIGR00406 235 AE---VIKELYPQFSRLVKPGGWLILSGILET----------------QAQSVCDAYEQG-FTVVEIRQR 284 (288)
T ss_pred HH---HHHHHHHHHHHHcCCCcEEEEEeCcHh----------------HHHHHHHHHHcc-CceeeEecc
Confidence 43 235789999999999999999865321 346677788776 988776554
No 101
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.44 E-value=6.2e-13 Score=123.13 Aligned_cols=101 Identities=21% Similarity=0.314 Sum_probs=83.0
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC------CCCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~------~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
+.+|||+|||+|..+..+++++|..+|+++|.|+.+++.++++.. ..+++++..|.... +...+||+|+++-.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPP 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPP 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcC
Confidence 469999999999999999999999999999999999999997632 13678888887542 24567999999877
Q ss_pred cccc---CC--HHHHHHHHHHhcccCcEEEEEc
Q 019479 188 IEYW---PD--PQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 188 l~~~---~d--~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
+|.. .+ ..++++.+.++|+|||.++++.
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 7643 22 2478999999999999999985
No 102
>PHA03411 putative methyltransferase; Provisional
Probab=99.44 E-value=2.3e-12 Score=113.03 Aligned_cols=128 Identities=14% Similarity=0.191 Sum_probs=99.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 192 (340)
...+|||+|||+|.++..++++.++.+|+++|+++.+++.++++. ++++++++|+.++. ...+||+|+++-.+++.+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~--~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL--PEAEWITSDVFEFE-SNEKFDVVISNPPFGKIN 140 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC--cCCEEEECchhhhc-ccCCCcEEEEcCCccccC
Confidence 456999999999999999888766689999999999999999864 47899999998764 346799999988888753
Q ss_pred CH--------------------HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEE
Q 019479 193 DP--------------------QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDV 252 (340)
Q Consensus 193 d~--------------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 252 (340)
.. ...++....+|+|+|.+++.-...+ .++.-.+.+++.++++++||...
T Consensus 141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~----------~y~~sl~~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP----------YYDGTMKSNKYLKWSKQTGLVTY 210 (279)
T ss_pred chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc----------cccccCCHHHHHHHHHhcCcEec
Confidence 22 2455666788899998776632221 22334579999999999999854
Q ss_pred E
Q 019479 253 K 253 (340)
Q Consensus 253 ~ 253 (340)
-
T Consensus 211 ~ 211 (279)
T PHA03411 211 A 211 (279)
T ss_pred C
Confidence 3
No 103
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.43 E-value=2.3e-12 Score=111.38 Aligned_cols=133 Identities=17% Similarity=0.241 Sum_probs=107.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCC--CCCCCccEEEec
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLP--FPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~--~~~~~fD~v~~~ 185 (340)
....+|||+|||+|..+..++.+.+..++++||+++++.+.|++... .++++++++|+.++. ....+||+|+|+
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 35889999999999999999999877999999999999999998743 367999999997754 344579999998
Q ss_pred CcccccC------------------CHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHC
Q 019479 186 GSIEYWP------------------DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKA 247 (340)
Q Consensus 186 ~~l~~~~------------------d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 247 (340)
--+.... +.+..++.+.++|||||.+.++.+.. ...++.+++.+.
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e-----------------rl~ei~~~l~~~ 185 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE-----------------RLAEIIELLKSY 185 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH-----------------HHHHHHHHHHhc
Confidence 5554332 22378899999999999999885421 356788899999
Q ss_pred CCcEEEEEEeCCcc
Q 019479 248 GFKDVKLKRIGPKW 261 (340)
Q Consensus 248 GF~~v~~~~~~~~~ 261 (340)
+|...++..+.+.-
T Consensus 186 ~~~~k~i~~V~p~~ 199 (248)
T COG4123 186 NLEPKRIQFVYPKI 199 (248)
T ss_pred CCCceEEEEecCCC
Confidence 99999988886544
No 104
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.42 E-value=2.2e-12 Score=107.48 Aligned_cols=150 Identities=19% Similarity=0.221 Sum_probs=95.2
Q ss_pred hhhhhhhhhhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC
Q 019479 79 FYRFLSIVYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 158 (340)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~ 158 (340)
.|+.+.+.|++... .|-..-++.++..+...++...|.|+|||.+.++..+.. ..+|..+|+-.
T Consensus 40 ~F~~YH~Gfr~Qv~--~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva----------- 103 (219)
T PF05148_consen 40 LFDIYHEGFRQQVK--KWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVA----------- 103 (219)
T ss_dssp HHHHHHHHHHHHHC--TSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS------------
T ss_pred HHHHHHHHHHHHHh--cCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---CceEEEeeccC-----------
Confidence 34555556655444 343333444555544444678999999999999865432 46899999943
Q ss_pred CCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHH
Q 019479 159 LKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEE 238 (340)
Q Consensus 159 ~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (340)
.|-.+..+|+...|++++++|+++++.+|... |+..+++|+.|+|||||.|.|.+... ++.+.+
T Consensus 104 -~n~~Vtacdia~vPL~~~svDv~VfcLSLMGT-n~~~fi~EA~RvLK~~G~L~IAEV~S--------------Rf~~~~ 167 (219)
T PF05148_consen 104 -PNPRVTACDIANVPLEDESVDVAVFCLSLMGT-NWPDFIREANRVLKPGGILKIAEVKS--------------RFENVK 167 (219)
T ss_dssp -SSTTEEES-TTS-S--TT-EEEEEEES---SS--HHHHHHHHHHHEEEEEEEEEEEEGG--------------G-S-HH
T ss_pred -CCCCEEEecCccCcCCCCceeEEEEEhhhhCC-CcHHHHHHHHheeccCcEEEEEEecc--------------cCcCHH
Confidence 34457889999999999999999999888754 88999999999999999999987543 244788
Q ss_pred HHHHHHHHCCCcEEEEEEeCCc
Q 019479 239 EYIEWFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 239 ~~~~~l~~aGF~~v~~~~~~~~ 260 (340)
.+.+.++..||+.......+..
T Consensus 168 ~F~~~~~~~GF~~~~~d~~n~~ 189 (219)
T PF05148_consen 168 QFIKALKKLGFKLKSKDESNKH 189 (219)
T ss_dssp HHHHHHHCTTEEEEEEE--STT
T ss_pred HHHHHHHHCCCeEEecccCCCe
Confidence 8999999999999886655543
No 105
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.42 E-value=1.5e-12 Score=120.12 Aligned_cols=105 Identities=22% Similarity=0.249 Sum_probs=86.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCC--CCCCCCccEEEecCc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDL--PFPTDYADRYVSAGS 187 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~--~~~~~~fD~v~~~~~ 187 (340)
.+..+||||||+|.++..+++.+|...++|+|+++.+++.+.++. ...|+.++++|+..+ .++++++|.|+++..
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 467999999999999999999999999999999999999998663 346899999999653 467889999998654
Q ss_pred ccccCCH------HHHHHHHHHhcccCcEEEEEccC
Q 019479 188 IEYWPDP------QRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 188 l~~~~d~------~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
..|.... ..+++++.|+|+|||.+.+.+..
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 3332222 47899999999999999987544
No 106
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.42 E-value=6.9e-13 Score=111.68 Aligned_cols=144 Identities=20% Similarity=0.188 Sum_probs=100.3
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--CC-cEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KE-CTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~-i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
...+.||+|+|.|+.+..++-.+ ..+|..+|..+..++.|++.... .+ .++.+..++++.....+||+|++-+++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 46799999999999998776653 57899999999999999987654 23 5678888887654567899999999999
Q ss_pred ccCCHH--HHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 190 YWPDPQ--RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 190 ~~~d~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
|+.|.+ ++|++|...|+|+|.+++-+....... ..+-..-....++.+.+.++|++||++++....-.
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~-~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~ 203 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF-DEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQK 203 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE-EEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-T
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC-cccCCccCeeecCHHHHHHHHHHcCCEEEEecccc
Confidence 999886 899999999999999999765433211 00000001113478999999999999998876653
No 107
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.41 E-value=7.5e-13 Score=103.17 Aligned_cols=102 Identities=32% Similarity=0.405 Sum_probs=82.8
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCC--CCCCCccEEEecCc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLP--FPTDYADRYVSAGS 187 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~--~~~~~fD~v~~~~~ 187 (340)
|.+|||+|||+|.++..+++.. ..+++|+|+++..++.++.+.. ..+++++++|+.+.. +.+++||+|+++--
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 4689999999999999999995 6899999999999999998743 356899999997754 67889999999877
Q ss_pred ccccC--------CHHHHHHHHHHhcccCcEEEEEcc
Q 019479 188 IEYWP--------DPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 188 l~~~~--------d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
..... ....+++++.++|||||.++++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 66431 124789999999999999988753
No 108
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.41 E-value=9.8e-13 Score=121.01 Aligned_cols=102 Identities=21% Similarity=0.231 Sum_probs=83.3
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCC--CcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
..+|||+|||+|.++..+++..|..+|+++|+|+.+++.++++.... ..+++..|.... ..++||+|+++..+|+.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--IKGRFDMIISNPPFHDG 274 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCCccEEEECCCccCC
Confidence 45899999999999999999988889999999999999999764332 245677777542 35679999999988864
Q ss_pred C-----CHHHHHHHHHHhcccCcEEEEEccC
Q 019479 192 P-----DPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 192 ~-----d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
. ....+++++.++|||||.++++...
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 2 2358899999999999999887543
No 109
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.40 E-value=5.7e-12 Score=101.86 Aligned_cols=129 Identities=19% Similarity=0.239 Sum_probs=101.6
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---CCC-cEEEEcCCCCCCCCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKE-CTIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~-i~~~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
...+|||+|||.|.+...+++.-=....+|+|.|+.+++.|+..+. .+| |+|.+.|+.+..+..++||+|+-...+
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 3449999999999999999987212459999999999999986532 234 999999998766777889999987766
Q ss_pred cccC---CH-----HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 189 EYWP---DP-----QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 189 ~~~~---d~-----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
..+. |. ...+..+.+.|+|||+++|...+. |.+++.+.++..||+.....+..
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~-----------------T~dELv~~f~~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF-----------------TKDELVEEFENFNFEYLSTVPTP 207 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc-----------------cHHHHHHHHhcCCeEEEEeeccc
Confidence 5441 11 246788899999999999987543 78999999999999876665543
No 110
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.38 E-value=1e-12 Score=117.68 Aligned_cols=139 Identities=27% Similarity=0.308 Sum_probs=96.4
Q ss_pred CchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCc--EEEEcCCCCC
Q 019479 95 HWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC--TIIEGDAEDL 172 (340)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i--~~~~~d~~~~ 172 (340)
+.+..+.-..+.... .++.+|||+|||+|.+++..++. +..+|+|+|+++.+++.|+++...+++ ++......+
T Consensus 145 H~TT~lcl~~l~~~~--~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~- 220 (295)
T PF06325_consen 145 HPTTRLCLELLEKYV--KPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSED- 220 (295)
T ss_dssp CHHHHHHHHHHHHHS--STTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSC-
T ss_pred CHHHHHHHHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecc-
Confidence 334445555555443 37889999999999999998886 456899999999999999987332221 222222222
Q ss_pred CCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEE
Q 019479 173 PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDV 252 (340)
Q Consensus 173 ~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 252 (340)
....+||+|+++-...- ....+..+.++|+|||+++++..... ..+++.+.+++ ||+.+
T Consensus 221 -~~~~~~dlvvANI~~~v---L~~l~~~~~~~l~~~G~lIlSGIl~~----------------~~~~v~~a~~~-g~~~~ 279 (295)
T PF06325_consen 221 -LVEGKFDLVVANILADV---LLELAPDIASLLKPGGYLILSGILEE----------------QEDEVIEAYKQ-GFELV 279 (295)
T ss_dssp -TCCS-EEEEEEES-HHH---HHHHHHHCHHHEEEEEEEEEEEEEGG----------------GHHHHHHHHHT-TEEEE
T ss_pred -cccccCCEEEECCCHHH---HHHHHHHHHHhhCCCCEEEEccccHH----------------HHHHHHHHHHC-CCEEE
Confidence 23488999998754332 23677788999999999999875432 35677788876 99998
Q ss_pred EEEEeC
Q 019479 253 KLKRIG 258 (340)
Q Consensus 253 ~~~~~~ 258 (340)
+....+
T Consensus 280 ~~~~~~ 285 (295)
T PF06325_consen 280 EEREEG 285 (295)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 887764
No 111
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.38 E-value=1.3e-11 Score=104.55 Aligned_cols=96 Identities=24% Similarity=0.260 Sum_probs=74.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC--------CCCCCccEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP--------FPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~--------~~~~~fD~v 182 (340)
.++.+|||+|||+|.++..+++.+ +..+|+++|+|+.+ ..+++.++++|+.+.. ++.++||+|
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V 102 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVV 102 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEE
Confidence 578999999999999999998886 45689999999865 1257888999986642 346679999
Q ss_pred EecCccc----c-cC------CHHHHHHHHHHhcccCcEEEEEc
Q 019479 183 VSAGSIE----Y-WP------DPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 183 ~~~~~l~----~-~~------d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
++....+ + .. +...+++++.++|+|||++++..
T Consensus 103 ~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 103 MSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 9864321 1 11 12578999999999999999864
No 112
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.36 E-value=1.9e-11 Score=105.32 Aligned_cols=130 Identities=13% Similarity=0.015 Sum_probs=99.1
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---------------CCCCcEEEEcCCCCCCCC--
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---------------PLKECTIIEGDAEDLPFP-- 175 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---------------~~~~i~~~~~d~~~~~~~-- 175 (340)
++.+||+.|||.|..+..++++ |.+|+|+|+|+.+++.+.+.. ...++++.++|+.+++..
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 5689999999999999999998 899999999999999986531 224689999999987632
Q ss_pred -CCCccEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcE
Q 019479 176 -TDYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKD 251 (340)
Q Consensus 176 -~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 251 (340)
.+.||+|+-..++++++.. .+..+.+.++|+|||.++++....+... -...+ ..+.+++.+++.. +|++
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~----~GPPf--~v~~~e~~~lf~~-~~~i 192 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKS----QTPPY--SVTQAELIKNFSA-KIKF 192 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCC----CCCCC--cCCHHHHHHhccC-CceE
Confidence 2579999999999999654 3789999999999999988754322110 01111 2367888888864 3443
No 113
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.36 E-value=8.1e-12 Score=94.03 Aligned_cols=98 Identities=33% Similarity=0.424 Sum_probs=83.4
Q ss_pred EEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCCC-CCCCccEEEecCcccc-
Q 019479 116 RVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLPF-PTDYADRYVSAGSIEY- 190 (340)
Q Consensus 116 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~~-~~~~fD~v~~~~~l~~- 190 (340)
+|+|+|||.|..+..+++ .+..+++++|+++.+++.+++. ....++++...|+.+... ..++||+|++..++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999988 4578999999999999988832 334578899999977553 4567999999999998
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEE
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
..+...+++.+.+.|+|||.+++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 677789999999999999999876
No 114
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.36 E-value=1.5e-11 Score=106.22 Aligned_cols=109 Identities=19% Similarity=0.171 Sum_probs=83.4
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCC
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFP 175 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~ 175 (340)
.+...++..+.. .++.+|||+|||+|.++..+++.. .+|+++|.++.+++.++++. ...+++++.+|..+....
T Consensus 65 ~~~~~l~~~l~~-~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 141 (212)
T PRK00312 65 YMVARMTELLEL-KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPA 141 (212)
T ss_pred HHHHHHHHhcCC-CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCc
Confidence 334444444443 478899999999999999888773 58999999999999998763 345689999998653323
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.++||+|++...++++ .+.+.+.|+|||++++...
T Consensus 142 ~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 142 YAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 4789999998776654 3567899999999988643
No 115
>PRK04457 spermidine synthase; Provisional
Probab=99.35 E-value=9.8e-12 Score=110.55 Aligned_cols=105 Identities=18% Similarity=0.121 Sum_probs=83.5
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCC-CCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDL-PFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~-~~~~~~fD~v~~~~ 186 (340)
+++.+|||||||+|.++..+++.+|+.+++++|+++++++.|++... .++++++.+|..+. ....++||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 36789999999999999999999999999999999999999998743 36789999998542 22345799999753
Q ss_pred cc-cccC---CHHHHHHHHHHhcccCcEEEEEcc
Q 019479 187 SI-EYWP---DPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 187 ~l-~~~~---d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.- ...+ ....+++++.+.|+|||++++...
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 11 1111 125899999999999999998644
No 116
>PLN02672 methionine S-methyltransferase
Probab=99.35 E-value=1.3e-11 Score=126.73 Aligned_cols=167 Identities=18% Similarity=0.136 Sum_probs=121.5
Q ss_pred hHHhhhhhhhhhhhhcccCCCCchHHHHHHhccccCCC-CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHH
Q 019479 74 KEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLF-DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK 152 (340)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~ 152 (340)
.+..+||+..-.+-+.++.|+.+++.+.+. +...+.. -++.+|||+|||+|..++.+++.++..+|+|+|+|+.+++.
T Consensus 79 ~G~~~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~ 157 (1082)
T PLN02672 79 EGFRNRKKLTMMEIPSIFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKV 157 (1082)
T ss_pred CCeEEecCCceeeCCCcccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 355577777777778889999999888877 4332110 13568999999999999999999888899999999999999
Q ss_pred HHHhCCC-------------------CCcEEEEcCCCCCCCC-CCCccEEEecCccc--------------c--------
Q 019479 153 AKQKEPL-------------------KECTIIEGDAEDLPFP-TDYADRYVSAGSIE--------------Y-------- 190 (340)
Q Consensus 153 a~~~~~~-------------------~~i~~~~~d~~~~~~~-~~~fD~v~~~~~l~--------------~-------- 190 (340)
|+++... .+++++++|+.+.... ..+||+|+++--.- +
T Consensus 158 A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~ 237 (1082)
T PLN02672 158 AWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYS 237 (1082)
T ss_pred HHHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccc
Confidence 9877321 3689999999653211 23699999863211 0
Q ss_pred ------c------CCH----HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHH-HHHHHCCCcEEE
Q 019479 191 ------W------PDP----QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYI-EWFQKAGFKDVK 253 (340)
Q Consensus 191 ------~------~d~----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~aGF~~v~ 253 (340)
+ .|- .+++.++.++|+|||++++.... ...+.+. +++++.||+.++
T Consensus 238 ~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~-----------------~q~~~v~~~l~~~~gf~~~~ 300 (1082)
T PLN02672 238 LSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGG-----------------RPGQAVCERLFERRGFRITK 300 (1082)
T ss_pred cCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc-----------------cHHHHHHHHHHHHCCCCeeE
Confidence 0 011 36778888899999998876422 1245667 599999999988
Q ss_pred EEEeC
Q 019479 254 LKRIG 258 (340)
Q Consensus 254 ~~~~~ 258 (340)
+....
T Consensus 301 ~~~~~ 305 (1082)
T PLN02672 301 LWQTK 305 (1082)
T ss_pred Eeeeh
Confidence 77654
No 117
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=2.1e-11 Score=104.62 Aligned_cols=133 Identities=22% Similarity=0.267 Sum_probs=107.9
Q ss_pred hccccCCCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhCC---C-CCcEEEEcCCCCCCCCCCC
Q 019479 104 ALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP---L-KECTIIEGDAEDLPFPTDY 178 (340)
Q Consensus 104 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~---~-~~i~~~~~d~~~~~~~~~~ 178 (340)
+.....+ .++.+|||.|.|+|.++..+++.. |.++|+.+|+.++..+.|++++. . +++++..+|+.+.-..+ .
T Consensus 86 I~~~~gi-~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~ 163 (256)
T COG2519 86 IVARLGI-SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-D 163 (256)
T ss_pred HHHHcCC-CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-c
Confidence 3344444 489999999999999999999865 44899999999999999998832 2 44889999997755444 7
Q ss_pred ccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 179 ADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 179 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
||+|++ .+++|.+++.++.++|||||.+++..+...+ .+...+.|++.||..++..++-
T Consensus 164 vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQ----------------v~kt~~~l~~~g~~~ie~~E~l 222 (256)
T COG2519 164 VDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQ----------------VEKTVEALRERGFVDIEAVETL 222 (256)
T ss_pred cCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCHHH----------------HHHHHHHHHhcCccchhhheee
Confidence 999998 7999999999999999999999988775432 3455567888899998887775
Q ss_pred C
Q 019479 259 P 259 (340)
Q Consensus 259 ~ 259 (340)
.
T Consensus 223 ~ 223 (256)
T COG2519 223 V 223 (256)
T ss_pred e
Confidence 3
No 118
>PRK01581 speE spermidine synthase; Validated
Probab=99.34 E-value=3.5e-11 Score=109.57 Aligned_cols=137 Identities=15% Similarity=0.113 Sum_probs=100.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh----------CCCCCcEEEEcCCCC-CCCCCCCcc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----------EPLKECTIIEGDAED-LPFPTDYAD 180 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~----------~~~~~i~~~~~d~~~-~~~~~~~fD 180 (340)
..+.+||+||||+|..+..+++..+..+|+++|+++++++.|++. ...++++++.+|..+ +....++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 357899999999999999988874457999999999999999962 235789999999965 333456799
Q ss_pred EEEecCcccccCC------HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEE
Q 019479 181 RYVSAGSIEYWPD------PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 181 ~v~~~~~l~~~~d------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
+|++... ..... ...+++.+++.|+|||.+++....... .... ...+.+.++++||.+...
T Consensus 229 VIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~--~~~~----------~~~i~~tL~~af~~v~~y 295 (374)
T PRK01581 229 VIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPAD--APLV----------YWSIGNTIEHAGLTVKSY 295 (374)
T ss_pred EEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhh--hHHH----------HHHHHHHHHHhCCceEEE
Confidence 9998632 11110 136899999999999999887432210 0000 123668899999998877
Q ss_pred EEeCCcc
Q 019479 255 KRIGPKW 261 (340)
Q Consensus 255 ~~~~~~~ 261 (340)
....+.+
T Consensus 296 ~t~vPsy 302 (374)
T PRK01581 296 HTIVPSF 302 (374)
T ss_pred EEecCCC
Confidence 7776554
No 119
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.1e-11 Score=102.42 Aligned_cols=108 Identities=19% Similarity=0.255 Sum_probs=89.3
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCCCCC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLPFPT 176 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~~~~ 176 (340)
+...+++.+.. +++.+|||||||+|..+..+++. ..+|+.+|..++..+.|+++ ....|+.++++|-..-....
T Consensus 60 ~vA~m~~~L~~-~~g~~VLEIGtGsGY~aAvla~l--~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 60 MVARMLQLLEL-KPGDRVLEIGTGSGYQAAVLARL--VGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHHhCC-CCCCeEEEECCCchHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 45555555555 58899999999999999999998 45999999999999999987 45678999999997644456
Q ss_pred CCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 177 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.+||.|+.......++ +.+.+.||+||++++-.-
T Consensus 137 aPyD~I~Vtaaa~~vP------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEVP------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCCC------HHHHHhcccCCEEEEEEc
Confidence 8899999988888776 557889999999988643
No 120
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.30 E-value=3.2e-11 Score=105.27 Aligned_cols=136 Identities=24% Similarity=0.336 Sum_probs=103.9
Q ss_pred HhccccCCCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCCCCCCCC--
Q 019479 103 EALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDAEDLPFP-- 175 (340)
Q Consensus 103 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~~~~~~~-- 175 (340)
.++..+.+ .+|.+|||.|+|+|.++..+++.. |.++|+.+|..++..+.|++++ . ..++++.+.|+.+..+.
T Consensus 31 ~I~~~l~i-~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 31 YILMRLDI-RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred HHHHHcCC-CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 34444554 589999999999999999999875 6689999999999999999872 2 35799999999653332
Q ss_pred -CCCccEEEecCcccccCCHHHHHHHHHHhc-ccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEE
Q 019479 176 -TDYADRYVSAGSIEYWPDPQRGIKEAYRVL-KIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 176 -~~~fD~v~~~~~l~~~~d~~~~l~~~~~~L-kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 253 (340)
+..+|.|++ ++++|..++..+.++| |+||++.+..|...+ .....+.|++.||..++
T Consensus 110 ~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQ----------------v~~~~~~L~~~gf~~i~ 168 (247)
T PF08704_consen 110 LESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCIEQ----------------VQKTVEALREHGFTDIE 168 (247)
T ss_dssp -TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSHHH----------------HHHHHHHHHHTTEEEEE
T ss_pred ccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCHHH----------------HHHHHHHHHHCCCeeeE
Confidence 357999998 8999999999999999 999999888765432 34556678889999999
Q ss_pred EEEeCCc
Q 019479 254 LKRIGPK 260 (340)
Q Consensus 254 ~~~~~~~ 260 (340)
+.++..+
T Consensus 169 ~~Evl~R 175 (247)
T PF08704_consen 169 TVEVLLR 175 (247)
T ss_dssp EEEEEEE
T ss_pred EEEEEee
Confidence 8887543
No 121
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.29 E-value=7.7e-11 Score=101.66 Aligned_cols=136 Identities=20% Similarity=0.289 Sum_probs=97.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 192 (340)
...++||||+|.|..+..++..+ .+|+++|.|+.|....+++ +.+++ |..++...+.+||+|.|.++|....
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~k----g~~vl--~~~~w~~~~~~fDvIscLNvLDRc~ 165 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKK----GFTVL--DIDDWQQTDFKFDVISCLNVLDRCD 165 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhC----CCeEE--ehhhhhccCCceEEEeehhhhhccC
Confidence 56789999999999999999885 5799999999998888764 33333 3333443456899999999999999
Q ss_pred CHHHHHHHHHHhcccCcEEEEEc--cCCC--------chhHhhHhh---hHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 193 DPQRGIKEAYRVLKIGGKACVIG--PVYP--------TFWLSRFFA---DVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 193 d~~~~l~~~~~~LkpgG~l~i~~--~~~~--------~~~~~~~~~---~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
+|...|+.+++.|+|+|++++.- |..+ .......+. ..+. .....+.+.|+.+||+++......
T Consensus 166 ~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E--~~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 166 RPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFE--EQVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred CHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHH--HHHHHHHHHHHhcCCEEEEEeccC
Confidence 99999999999999999998752 1111 000000000 0010 013345588999999998887764
No 122
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=2.5e-11 Score=107.17 Aligned_cols=109 Identities=21% Similarity=0.241 Sum_probs=86.0
Q ss_pred ccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCC---CcEEEEcCCCCCCCCCCCccE
Q 019479 105 LEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---ECTIIEGDAEDLPFPTDYADR 181 (340)
Q Consensus 105 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~---~i~~~~~d~~~~~~~~~~fD~ 181 (340)
++.++.. .+.+|||+|||.|..+..+++..|..+++.+|.+..+++.++++...+ +..+...|..+ +..+ +||+
T Consensus 151 l~~l~~~-~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~v~~-kfd~ 227 (300)
T COG2813 151 LETLPPD-LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-PVEG-KFDL 227 (300)
T ss_pred HHhCCcc-CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-cccc-cccE
Confidence 4444433 344999999999999999999999999999999999999999885433 33456666654 3233 8999
Q ss_pred EEecCcccccCCH-----HHHHHHHHHhcccCcEEEEEcc
Q 019479 182 YVSAGSIEYWPDP-----QRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 182 v~~~~~l~~~~d~-----~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
|+++--+|.-.+. ++++++..+.|++||.|.|+-.
T Consensus 228 IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 228 IISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred EEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 9999988854333 2789999999999999988865
No 123
>PRK00811 spermidine synthase; Provisional
Probab=99.29 E-value=2.3e-11 Score=109.43 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=81.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--------CCCCcEEEEcCCCCC-CCCCCCccEEE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--------PLKECTIIEGDAEDL-PFPTDYADRYV 183 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~--------~~~~i~~~~~d~~~~-~~~~~~fD~v~ 183 (340)
.+++||+||||+|..+..++++.+..+|+++|+++.+++.|++.. ..++++++.+|.... ....++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 578999999999999999988744579999999999999999864 256799999998652 33467899999
Q ss_pred ecCcccccCCH----HHHHHHHHHhcccCcEEEEEc
Q 019479 184 SAGSIEYWPDP----QRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 184 ~~~~l~~~~d~----~~~l~~~~~~LkpgG~l~i~~ 215 (340)
+...-...+.. ..+++.+.+.|+|||.+++..
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 86433322221 478899999999999998764
No 124
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.29 E-value=5.5e-11 Score=99.81 Aligned_cols=146 Identities=15% Similarity=0.111 Sum_probs=106.3
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcE-EEEcCCCCC--CC------CCCCccE
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECT-IIEGDAEDL--PF------PTDYADR 181 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~-~~~~d~~~~--~~------~~~~fD~ 181 (340)
+.+|||||||||..+..+++.+|..+..-.|.++......+.. ...+|+. .+..|+... +. ..++||+
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 3369999999999999999999999999999988886555543 2234432 355666443 22 2458999
Q ss_pred EEecCcccccCCH--HHHHHHHHHhcccCcEEEEEccCCCchhH----hhHhhh------HhhcCCCHHHHHHHHHHCCC
Q 019479 182 YVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTFWL----SRFFAD------VWMLFPKEEEYIEWFQKAGF 249 (340)
Q Consensus 182 v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~----~~~~~~------~~~~~~~~~~~~~~l~~aGF 249 (340)
|++.+++|-.+-. +.+++.+.++|++||.|++-.+...+... ...|.. .....++.+++.++.+++|+
T Consensus 106 i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 106 IFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred eeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 9999999866433 47899999999999999998765442211 111111 12236789999999999999
Q ss_pred cEEEEEEeCC
Q 019479 250 KDVKLKRIGP 259 (340)
Q Consensus 250 ~~v~~~~~~~ 259 (340)
+.++..++..
T Consensus 186 ~l~~~~~MPA 195 (204)
T PF06080_consen 186 ELEEDIDMPA 195 (204)
T ss_pred ccCcccccCC
Confidence 9888877653
No 125
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.28 E-value=6.9e-11 Score=101.95 Aligned_cols=138 Identities=25% Similarity=0.282 Sum_probs=99.2
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---------------CCCcEEEEcCCCCCCCCC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---------------LKECTIIEGDAEDLPFPT 176 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---------------~~~i~~~~~d~~~~~~~~ 176 (340)
.++.+||+.|||.|..+..++++ |.+|+|+|+|+.+++.+.+... ..+|++.++|+.+++...
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 36779999999999999999998 8999999999999999854311 235789999998876333
Q ss_pred -CCccEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEE
Q 019479 177 -DYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 177 -~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 253 (340)
++||+|+=..+++-++.. .+..+.+.++|+|||.++++....+... .-...+ ..+.+++.+++. .+|++..
T Consensus 114 ~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~---~~GPPf--~v~~~ev~~l~~-~~f~i~~ 187 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGE---MEGPPF--SVTEEEVRELFG-PGFEIEE 187 (218)
T ss_dssp HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSC---SSSSS------HHHHHHHHT-TTEEEEE
T ss_pred cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcC---CCCcCC--CCCHHHHHHHhc-CCcEEEE
Confidence 479999999898888533 4789999999999999544432221110 001111 236889999998 8999887
Q ss_pred EEEe
Q 019479 254 LKRI 257 (340)
Q Consensus 254 ~~~~ 257 (340)
....
T Consensus 188 l~~~ 191 (218)
T PF05724_consen 188 LEEE 191 (218)
T ss_dssp EEEE
T ss_pred Eecc
Confidence 7764
No 126
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.28 E-value=1.6e-11 Score=103.90 Aligned_cols=100 Identities=32% Similarity=0.369 Sum_probs=75.8
Q ss_pred CEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--C--CcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 115 MRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--K--ECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~--~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
..++|+|||+|..++.++.. -.+|+|+|+|+.|++.|++.... . ..+....+..++--.+++.|+|++..++|+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~--~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH--YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHW 112 (261)
T ss_pred ceEEEeccCCCcchHHHHHh--hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHh
Confidence 38999999999888888887 46899999999999999976321 1 122233333333333789999999999998
Q ss_pred cCCHHHHHHHHHHhcccCc-EEEEEccC
Q 019479 191 WPDPQRGIKEAYRVLKIGG-KACVIGPV 217 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG-~l~i~~~~ 217 (340)
+ |..++++++.|+||+.| .+.+....
T Consensus 113 F-dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 113 F-DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred h-chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 8 78899999999998766 66555443
No 127
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.27 E-value=1.3e-10 Score=101.38 Aligned_cols=145 Identities=23% Similarity=0.343 Sum_probs=113.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCC--ceEEEEeCCHHHHHHHHHhCC---CCCc-EEEEcCCCCC---CCCCCCccEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEP---LKEC-TIIEGDAEDL---PFPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~g~D~s~~~~~~a~~~~~---~~~i-~~~~~d~~~~---~~~~~~fD~v 182 (340)
..+.+||||.||.|.........+|. .++...|.|+..++..++... ..++ +|.++|+.+. ...+...+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46789999999999999999999886 789999999999999987633 3444 9999999763 2234557999
Q ss_pred EecCcccccCCHH---HHHHHHHHhcccCcEEEEEc-cCCCchh-HhhHhh------hHhhcCCCHHHHHHHHHHCCCcE
Q 019479 183 VSAGSIEYWPDPQ---RGIKEAYRVLKIGGKACVIG-PVYPTFW-LSRFFA------DVWMLFPKEEEYIEWFQKAGFKD 251 (340)
Q Consensus 183 ~~~~~l~~~~d~~---~~l~~~~~~LkpgG~l~i~~-~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~l~~aGF~~ 251 (340)
+.+..++.++|.+ ..++.+.+++.|||.|+.+. +.++... ..+.+. ...+..++..++.++++.|||+.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K 293 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEK 293 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCch
Confidence 9999999999875 57899999999999998886 4444332 222221 23345789999999999999997
Q ss_pred EEEEE
Q 019479 252 VKLKR 256 (340)
Q Consensus 252 v~~~~ 256 (340)
++...
T Consensus 294 ~~q~I 298 (311)
T PF12147_consen 294 IDQRI 298 (311)
T ss_pred hhhee
Confidence 65543
No 128
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.27 E-value=5.3e-11 Score=108.32 Aligned_cols=108 Identities=22% Similarity=0.239 Sum_probs=83.3
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCCCC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLPFP 175 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~~~ 175 (340)
+...++..+.. +++.+|||||||+|.++..+++..+. ..|+++|+++.+++.|+++ ....++.++++|..+.+..
T Consensus 68 l~a~ll~~L~i-~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~ 146 (322)
T PRK13943 68 LMALFMEWVGL-DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE 146 (322)
T ss_pred HHHHHHHhcCC-CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc
Confidence 44444554444 46789999999999999999998643 5799999999999999875 3346789999998665444
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEE
Q 019479 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
.++||+|++...+.++ ...+.+.|+|||++++.
T Consensus 147 ~~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 147 FAPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVP 179 (322)
T ss_pred cCCccEEEECCchHHh------HHHHHHhcCCCCEEEEE
Confidence 5679999998665543 34577899999998875
No 129
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.26 E-value=2.4e-11 Score=103.96 Aligned_cols=111 Identities=21% Similarity=0.323 Sum_probs=83.6
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCC
Q 019479 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLP 173 (340)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~ 173 (340)
..+...+++.+.. +++.+|||||||+|..+..++.... ...|+++|..+...+.|++++ ...|+.++++|...-.
T Consensus 58 P~~~a~~l~~L~l-~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~ 136 (209)
T PF01135_consen 58 PSMVARMLEALDL-KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW 136 (209)
T ss_dssp HHHHHHHHHHTTC--TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT
T ss_pred HHHHHHHHHHHhc-CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc
Confidence 3455666666664 5899999999999999999998863 357999999999999999873 3568999999986543
Q ss_pred CCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 174 FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 174 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
....+||.|++......++ ..+.+.||+||+|++-.
T Consensus 137 ~~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 137 PEEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEE
T ss_pred ccCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEE
Confidence 3556899999998876554 45778899999998853
No 130
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.26 E-value=3.7e-11 Score=102.39 Aligned_cols=129 Identities=20% Similarity=0.217 Sum_probs=101.5
Q ss_pred HHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCcc
Q 019479 101 RDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYAD 180 (340)
Q Consensus 101 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD 180 (340)
++.++..+...+....|.|+|||.+..+. .. ...|+.+|+-+ .|-+++.+|+.+.|+++++.|
T Consensus 168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~a------------~~~~V~~cDm~~vPl~d~svD 230 (325)
T KOG3045|consen 168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS---SE--RHKVHSFDLVA------------VNERVIACDMRNVPLEDESVD 230 (325)
T ss_pred HHHHHHHHHhCcCceEEEecccchhhhhh---cc--ccceeeeeeec------------CCCceeeccccCCcCccCccc
Confidence 34444444444567899999999998876 22 35799999832 456788999999999999999
Q ss_pred EEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCCc
Q 019479 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 181 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 260 (340)
+++++.+|.- .|...+++++.|+||+||.++|.+... +|.+...+...++..||........+..
T Consensus 231 vaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~S--------------Rf~dv~~f~r~l~~lGF~~~~~d~~n~~ 295 (325)
T KOG3045|consen 231 VAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKS--------------RFSDVKGFVRALTKLGFDVKHKDVSNKY 295 (325)
T ss_pred EEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhh--------------hcccHHHHHHHHHHcCCeeeehhhhcce
Confidence 9999888764 588999999999999999999987543 2557778999999999998877666544
Q ss_pred c
Q 019479 261 W 261 (340)
Q Consensus 261 ~ 261 (340)
+
T Consensus 296 F 296 (325)
T KOG3045|consen 296 F 296 (325)
T ss_pred E
Confidence 4
No 131
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.26 E-value=2.3e-10 Score=96.75 Aligned_cols=144 Identities=18% Similarity=0.292 Sum_probs=96.3
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--------C------------------------
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------K------------------------ 160 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--------~------------------------ 160 (340)
.+..+|||||.+|.++..+++.+....+.|+|+++..++.|++.... .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 67899999999999999999999888999999999999999986421 0
Q ss_pred ------CcEEEEcCCC-----CCCCCCCCccEEEecCccccc----CC--HHHHHHHHHHhcccCcEEEEEccCCCchhH
Q 019479 161 ------ECTIIEGDAE-----DLPFPTDYADRYVSAGSIEYW----PD--PQRGIKEAYRVLKIGGKACVIGPVYPTFWL 223 (340)
Q Consensus 161 ------~i~~~~~d~~-----~~~~~~~~fD~v~~~~~l~~~----~d--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~ 223 (340)
|+.|...+.. -+++....||+|+|..+-.++ -| ...+++++.++|.|||+|++.-.....+..
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWksY~k 217 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKSYKK 217 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHHHHH
Confidence 1112111110 012345679999986554433 22 248999999999999999876433222221
Q ss_pred -hhHhhhH----hhcCCCHHHHHHHHHHC--CCcEEEEEE
Q 019479 224 -SRFFADV----WMLFPKEEEYIEWFQKA--GFKDVKLKR 256 (340)
Q Consensus 224 -~~~~~~~----~~~~~~~~~~~~~l~~a--GF~~v~~~~ 256 (340)
.+..... ...+..++.+.+++.+. ||+-++-..
T Consensus 218 aar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~ 257 (288)
T KOG2899|consen 218 AARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVEDLG 257 (288)
T ss_pred HHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeecccc
Confidence 1222222 22255789999999887 666544333
No 132
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.24 E-value=1.6e-10 Score=110.47 Aligned_cols=128 Identities=20% Similarity=0.248 Sum_probs=95.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCC----CCCCCccEEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLP----FPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~----~~~~~fD~v~ 183 (340)
.++.+|||+|||+|..+..+++..+ .++|+++|+++.+++.++++ .+..+++++++|+.+++ ...++||.|+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 4688999999999999999998754 46999999999999999876 33457899999997764 3456899999
Q ss_pred ec------CcccccCC----------------HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHH
Q 019479 184 SA------GSIEYWPD----------------PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYI 241 (340)
Q Consensus 184 ~~------~~l~~~~d----------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (340)
+. .++.+-++ ..++|+++.+.|||||+|+..+..... ..+.+.+.
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~-------------~Ene~~v~ 397 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP-------------AENEAQIE 397 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh-------------hhHHHHHH
Confidence 73 33443333 247899999999999999877644321 11345566
Q ss_pred HHHHHC-CCcEE
Q 019479 242 EWFQKA-GFKDV 252 (340)
Q Consensus 242 ~~l~~a-GF~~v 252 (340)
..+++. +|+.+
T Consensus 398 ~~l~~~~~~~~~ 409 (434)
T PRK14901 398 QFLARHPDWKLE 409 (434)
T ss_pred HHHHhCCCcEec
Confidence 677665 57643
No 133
>PRK03612 spermidine synthase; Provisional
Probab=99.23 E-value=2.2e-10 Score=111.63 Aligned_cols=126 Identities=20% Similarity=0.146 Sum_probs=93.7
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHh----------CCCCCcEEEEcCCCCC-CCCCCCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQK----------EPLKECTIIEGDAEDL-PFPTDYA 179 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~----------~~~~~i~~~~~d~~~~-~~~~~~f 179 (340)
+++++|||||||+|..+..++++ +. .+++++|+++++++.++++ ..+++++++.+|..+. ...+++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 36789999999999999999875 55 7999999999999999983 1236799999998652 2335689
Q ss_pred cEEEecCcccccCCH-----HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCc
Q 019479 180 DRYVSAGSIEYWPDP-----QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFK 250 (340)
Q Consensus 180 D~v~~~~~l~~~~d~-----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~ 250 (340)
|+|++...-...+.. .++++.+.+.|||||.+++...... .. .. ...++.+.++++||.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~-~~-~~----------~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPY-FA-PK----------AFWSIEATLEAAGLA 438 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcc-cc-hH----------HHHHHHHHHHHcCCE
Confidence 999997543322221 3689999999999999988753211 10 11 124677899999993
No 134
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=2.8e-10 Score=108.51 Aligned_cols=129 Identities=18% Similarity=0.205 Sum_probs=93.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--CCcEEEEcCCCCCC--CCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECTIIEGDAEDLP--FPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~i~~~~~d~~~~~--~~~~~fD~v~~~~~ 187 (340)
.++.+|||+|||+|..+..+++..++.+|+++|+++.+++.++++... -+++++++|+.+++ +..++||.|++.-.
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 478899999999999999999987668999999999999999877432 23678999997653 33567999995332
Q ss_pred c------cc------cCC----------HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHH
Q 019479 188 I------EY------WPD----------PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQ 245 (340)
Q Consensus 188 l------~~------~~d----------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 245 (340)
. .+ ... ...+++++.+.|||||++++.+..... ..+.+.+...++
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~-------------~Ene~~v~~~l~ 389 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP-------------EENEQQIKAFLA 389 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh-------------hhCHHHHHHHHH
Confidence 1 11 111 126899999999999999987653321 124556666666
Q ss_pred HC-CCcEEE
Q 019479 246 KA-GFKDVK 253 (340)
Q Consensus 246 ~a-GF~~v~ 253 (340)
+. +|+.+.
T Consensus 390 ~~~~~~~~~ 398 (427)
T PRK10901 390 RHPDAELLD 398 (427)
T ss_pred hCCCCEEec
Confidence 54 566543
No 135
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.19 E-value=1.1e-10 Score=99.13 Aligned_cols=103 Identities=25% Similarity=0.304 Sum_probs=78.7
Q ss_pred CEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCC-CC--CCCCCccEEEecCcc
Q 019479 115 MRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAED-LP--FPTDYADRYVSAGSI 188 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~-~~--~~~~~fD~v~~~~~l 188 (340)
..+||||||.|.++..+|..+|+..++|+|++...+..+.++ ....|+.++++|+.. +. ++++++|.|+.++.=
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 389999999999999999999999999999999999888765 356899999999976 22 456889999984332
Q ss_pred cccCCH--------HHHHHHHHHhcccCcEEEEEccC
Q 019479 189 EYWPDP--------QRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 189 ~~~~d~--------~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
-+.... ..+++.+.++|+|||.|.+.+..
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~ 135 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV 135 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence 221111 17999999999999999887643
No 136
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=4.4e-10 Score=107.70 Aligned_cols=128 Identities=18% Similarity=0.228 Sum_probs=92.1
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCCCCCccEEEec--
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFPTDYADRYVSA-- 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~~~~fD~v~~~-- 185 (340)
.++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.++++. +..+++++++|+..++ ++++||+|++.
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~P 327 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAP 327 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCC
Confidence 4678999999999999998888653 469999999999999998763 3356889999997764 45679999962
Q ss_pred -Cccccc---C------C----------HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHH
Q 019479 186 -GSIEYW---P------D----------PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQ 245 (340)
Q Consensus 186 -~~l~~~---~------d----------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 245 (340)
.....+ + + ...+|.++.+.|||||+++..+..... ..+.+.+..+++
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~-------------~Ene~~v~~~l~ 394 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP-------------EENELQIEAFLQ 394 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh-------------hhHHHHHHHHHH
Confidence 111111 1 1 126899999999999999998755431 113445556666
Q ss_pred HC-CCcEEE
Q 019479 246 KA-GFKDVK 253 (340)
Q Consensus 246 ~a-GF~~v~ 253 (340)
+. +|..+.
T Consensus 395 ~~~~~~~~~ 403 (445)
T PRK14904 395 RHPEFSAEP 403 (445)
T ss_pred hCCCCEEec
Confidence 55 465433
No 137
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.18 E-value=3.5e-10 Score=107.84 Aligned_cols=107 Identities=20% Similarity=0.244 Sum_probs=81.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCC----cEEEEcCCCCCCC--CCCCccEEEec
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE----CTIIEGDAEDLPF--PTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~----i~~~~~d~~~~~~--~~~~fD~v~~~ 185 (340)
.++.+|||+|||+|..+..+++..+..+|+++|+++.+++.++++....+ +.+..+|....+. ..++||.|++.
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 46889999999999999999998776899999999999999987743222 3335666654432 45679999963
Q ss_pred ------CcccccCC----------------HHHHHHHHHHhcccCcEEEEEccCC
Q 019479 186 ------GSIEYWPD----------------PQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 186 ------~~l~~~~d----------------~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
+++++.++ ...+|+++.++|||||+|+..+...
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 34444443 2478999999999999999886554
No 138
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.18 E-value=4.2e-10 Score=93.68 Aligned_cols=99 Identities=18% Similarity=0.188 Sum_probs=77.5
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
.++.+|||+|||+|.++..++++ +.+++++|+++.+++.++++.. ..+++++.+|+.++++++.+||.|+++--++
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~- 88 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPYN- 88 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCcc-
Confidence 36779999999999999999998 6799999999999999998854 3579999999998887776799999876554
Q ss_pred cCCHHHHHHHHHHh--cccCcEEEEEc
Q 019479 191 WPDPQRGIKEAYRV--LKIGGKACVIG 215 (340)
Q Consensus 191 ~~d~~~~l~~~~~~--LkpgG~l~i~~ 215 (340)
+ ....+.++.+. +.++|.+++..
T Consensus 89 ~--~~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 89 I--STPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred c--HHHHHHHHHhcCCCcceEEEEEEH
Confidence 3 23444544443 34677776663
No 139
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.16 E-value=7.5e-11 Score=98.80 Aligned_cols=141 Identities=16% Similarity=0.155 Sum_probs=109.0
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCC--cEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE--CTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
+....++|||||-|.....+.... -.+++.+|.|-.|++.++.... +. +....+|-+.+++.++++|+|+++..+|
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qd-p~i~~~~~v~DEE~Ldf~ens~DLiisSlslH 148 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQD-PSIETSYFVGDEEFLDFKENSVDLIISSLSLH 148 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCC-CceEEEEEecchhcccccccchhhhhhhhhhh
Confidence 345789999999999999998872 4689999999999999986432 33 4567889999999999999999999999
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhh------------HhhcCCCHHHHHHHHHHCCCcEEEE
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFAD------------VWMLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
++.|....+.+|...|||+|.++-.-...+.....+.... ....|....++-.+|.+|||.-+.+
T Consensus 149 W~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tv 225 (325)
T KOG2940|consen 149 WTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTV 225 (325)
T ss_pred hhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCccccee
Confidence 9999999999999999999998765433332222111111 1112445688999999999996554
No 140
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.16 E-value=8.1e-10 Score=105.17 Aligned_cols=107 Identities=23% Similarity=0.315 Sum_probs=83.2
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCC-CCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLP-FPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~-~~~~~fD~v~~~~ 186 (340)
.++.+|||+|||+|..+..+++.. ++.+|+++|+++.+++.++++. +..+++++++|...++ +..++||.|++.-
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECC
Confidence 478899999999999999999876 3579999999999999998773 3346889999987765 4466899999732
Q ss_pred ---ccccc---CC----------------HHHHHHHHHHhcccCcEEEEEccCC
Q 019479 187 ---SIEYW---PD----------------PQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 187 ---~l~~~---~d----------------~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
.+..+ ++ ..++|.++.+.|||||.|+..+...
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 12221 11 1367999999999999998876553
No 141
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.15 E-value=8.6e-10 Score=105.80 Aligned_cols=105 Identities=20% Similarity=0.204 Sum_probs=81.1
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCC--CCCCCccEEEec
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLP--FPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~--~~~~~fD~v~~~ 185 (340)
.++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++. ...+++++++|+.++. +. ++||+|++.
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D 327 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVD 327 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEc
Confidence 467899999999999999999886 4679999999999999998763 3346899999997653 23 679999975
Q ss_pred Ccc------cccCC----------------HHHHHHHHHHhcccCcEEEEEccC
Q 019479 186 GSI------EYWPD----------------PQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 186 ~~l------~~~~d----------------~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
--. .+-++ ...+++++.++|||||+++..+..
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 321 11111 125799999999999999876543
No 142
>PLN02366 spermidine synthase
Probab=99.14 E-value=4.4e-10 Score=101.81 Aligned_cols=104 Identities=20% Similarity=0.258 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-------CCCCcEEEEcCCCCC-C-CCCCCccEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECTIIEGDAEDL-P-FPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-------~~~~i~~~~~d~~~~-~-~~~~~fD~v 182 (340)
+.+++||+||||.|..+..+++..+..+|+.+|+++.+++.+++.. ..++++++.+|.... . .+.++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 3678999999999999999988733468999999999999999863 246899999997442 1 235679999
Q ss_pred EecCcccccCC----HHHHHHHHHHhcccCcEEEEEc
Q 019479 183 VSAGSIEYWPD----PQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 183 ~~~~~l~~~~d----~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
++...-.+.+. ...+++.+.+.|+|||.+++..
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 98543322221 1368999999999999997664
No 143
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.11 E-value=3.3e-10 Score=95.30 Aligned_cols=135 Identities=24% Similarity=0.269 Sum_probs=99.2
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHh-----CCCCCcEEEEcCCCCC--CCCCCCccEEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQK-----EPLKECTIIEGDAEDL--PFPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~-----~~~~~i~~~~~d~~~~--~~~~~~fD~v~ 183 (340)
+++.+|||.+.|-|..++..+++ |+ +|+-++.++..++.|+-+ ....+++++.+|..+. .+.|.+||+|+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 47999999999999999999998 65 999999999999999855 1224689999999663 47899999998
Q ss_pred ecCcccccC---CHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 184 SAGSIEYWP---DPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 184 ~~~~l~~~~---d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
-.--=.... -..++.++++|+|||||+++--....... +....-+..+.+.|+++||++++....
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r---------yrG~d~~~gVa~RLr~vGF~~v~~~~~ 278 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR---------YRGLDLPKGVAERLRRVGFEVVKKVRE 278 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc---------cccCChhHHHHHHHHhcCceeeeeehh
Confidence 521110000 11378999999999999997654332211 111223577889999999998776543
No 144
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.10 E-value=6.3e-10 Score=99.65 Aligned_cols=103 Identities=16% Similarity=0.128 Sum_probs=79.6
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-------CCCCcEEEEcCCCC-CCCCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECTIIEGDAED-LPFPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-------~~~~i~~~~~d~~~-~~~~~~~fD~v~~ 184 (340)
.+.+||+||||+|..+..+++..+..+++++|+++.+++.+++.. ..++++++.+|..+ +....++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 456999999999999999888755678999999999999999863 23568888888744 2223568999998
Q ss_pred cCcccccCC----HHHHHHHHHHhcccCcEEEEEc
Q 019479 185 AGSIEYWPD----PQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 185 ~~~l~~~~d----~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
......-+. ..++++.+.+.|+|||.+++..
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 654322222 3478899999999999998873
No 145
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.10 E-value=9e-10 Score=98.30 Aligned_cols=107 Identities=17% Similarity=0.104 Sum_probs=82.0
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCCCCCccEEEecC-
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFPTDYADRYVSAG- 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~~~~fD~v~~~~- 186 (340)
+++.+|||+|||+|..+..+++..+ ...|+++|+++.+++.++++. ...++.++..|...++...+.||.|++.-
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 4788999999999999999988764 368999999999999998763 33568889999876654456799999732
Q ss_pred -----cccccCC----------------HHHHHHHHHHhcccCcEEEEEccCC
Q 019479 187 -----SIEYWPD----------------PQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 187 -----~l~~~~d----------------~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
++.+-++ ...+|+++.+.|||||+|+..+...
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 1111111 1258999999999999998776543
No 146
>PHA03412 putative methyltransferase; Provisional
Probab=99.09 E-value=1.1e-09 Score=94.12 Aligned_cols=133 Identities=16% Similarity=0.177 Sum_probs=89.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhC---CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV---DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
.+.+|||+|||+|.++..++++. +..+|+++|+++.+++.|+++. .++.++.+|+...++ +++||+|+++--++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~ 125 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--PEATWINADALTTEF-DTLFDMAISNPPFG 125 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc--cCCEEEEcchhcccc-cCCccEEEECCCCC
Confidence 36799999999999999998864 3469999999999999999765 458899999976554 56899999985555
Q ss_pred ccC--C----------HHHHHHHHHHhcccCcEEEEEccCCC-chhHhhHhhhHhhcCCCHHHHHHHHHHCCCcE
Q 019479 190 YWP--D----------PQRGIKEAYRVLKIGGKACVIGPVYP-TFWLSRFFADVWMLFPKEEEYIEWFQKAGFKD 251 (340)
Q Consensus 190 ~~~--d----------~~~~l~~~~~~LkpgG~l~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 251 (340)
... + ...+++++.+++++|+. ++=....+ .+...+++. +..-.+...+.++.++.|+..
T Consensus 126 ~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP~~~~~~~y~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 197 (241)
T PHA03412 126 KIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-IIPQMSANFRYSGTHYFR--QDESTTSSKCKKFLDETGLEM 197 (241)
T ss_pred CccccccCCcccccHHHHHHHHHHHHHcCCCEE-EeCcccccCcccCcccee--eccCcccHHHHHHHHhcCeee
Confidence 221 1 23578888886666664 22111110 110111110 011235677888999999774
No 147
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.09 E-value=4.9e-10 Score=102.44 Aligned_cols=145 Identities=18% Similarity=0.153 Sum_probs=97.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---------CC----CcEEEEcCCCCC----CCC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---------LK----ECTIIEGDAEDL----PFP 175 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---------~~----~i~~~~~d~~~~----~~~ 175 (340)
++.+|||+|||.|..+.-.... .-..++|+|++...++.|++|.. .. ...|+.+|.... .+.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 7889999999999988877776 45799999999999999998851 11 245678887542 133
Q ss_pred C--CCccEEEecCccccc-CCH---HHHHHHHHHhcccCcEEEEEccCCCchh--Hh----------------------h
Q 019479 176 T--DYADRYVSAGSIEYW-PDP---QRGIKEAYRVLKIGGKACVIGPVYPTFW--LS----------------------R 225 (340)
Q Consensus 176 ~--~~fD~v~~~~~l~~~-~d~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~~----------------------~ 225 (340)
+ .+||+|-|..++|+. .+. ..+|+++.+.|+|||+++.+.+...... +. .
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~ 220 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSD 220 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCC
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEeccc
Confidence 3 489999999999986 333 3689999999999999998754321110 00 0
Q ss_pred ----Hhh------------hHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 226 ----FFA------------DVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 226 ----~~~------------~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
.+. .........+.+.+++++.||+.+....+.
T Consensus 221 ~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~F~ 269 (331)
T PF03291_consen 221 DFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKKNFH 269 (331)
T ss_dssp SS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEEEHH
T ss_pred CCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeCChH
Confidence 000 000012357889999999999999877664
No 148
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.08 E-value=1.1e-09 Score=94.39 Aligned_cols=146 Identities=20% Similarity=0.163 Sum_probs=99.4
Q ss_pred hhhhHHhhhhhhhhhhhhcccCCCCchHHHHHHhccccCCC--CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHH
Q 019479 71 QHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPADLF--DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH 148 (340)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~ 148 (340)
||.-++..|-+..-..-..++.|+..++..++.+++..... -.+..|||+|||+|..+..++...|.++|+++|.|+.
T Consensus 104 QYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~ 183 (328)
T KOG2904|consen 104 QYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKA 183 (328)
T ss_pred hheeccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHH
Confidence 33333333333333334557777888887777666543211 1456899999999999999999999999999999999
Q ss_pred HHHHHHHhCC----CCCcEEEEcCCCC-----CCCCCCCccEEEecCcccccCCHH------------------------
Q 019479 149 QLAKAKQKEP----LKECTIIEGDAED-----LPFPTDYADRYVSAGSIEYWPDPQ------------------------ 195 (340)
Q Consensus 149 ~~~~a~~~~~----~~~i~~~~~d~~~-----~~~~~~~fD~v~~~~~l~~~~d~~------------------------ 195 (340)
++..|.++.. ..++.+++-+.+. .+...+++|+++++--.-.-+|.+
T Consensus 184 Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~ 263 (328)
T KOG2904|consen 184 AIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDN 263 (328)
T ss_pred HHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHH
Confidence 9999987632 3456666444322 335678899999975543332221
Q ss_pred --HHHHHHHHhcccCcEEEEEcc
Q 019479 196 --RGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 196 --~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.++.-+.|+|+|||.+.+...
T Consensus 264 ~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 264 LVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred HHHHHHhhHhhcccCCeEEEEec
Confidence 345566789999999887644
No 149
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.08 E-value=2.5e-09 Score=102.52 Aligned_cols=137 Identities=18% Similarity=0.154 Sum_probs=96.4
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCC--
Q 019479 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDL-- 172 (340)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~-- 172 (340)
+.+...++..+.. .++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++. ...+++++++|+.+.
T Consensus 283 e~l~~~vl~~l~~-~~~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~ 359 (443)
T PRK13168 283 QKMVARALEWLDP-QPGDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHhcC-CCCCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhh
Confidence 4455555555543 36789999999999999999988 479999999999999999773 335799999998642
Q ss_pred --CCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCc
Q 019479 173 --PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFK 250 (340)
Q Consensus 173 --~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~ 250 (340)
++.+++||+|++.---.- ....++.+.+ ++|++.+++..... .. ..++ ..|.+.||+
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyvSCnp~--tl--------------aRDl-~~L~~~gY~ 418 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYVSCNPA--TL--------------ARDA-GVLVEAGYR 418 (443)
T ss_pred hhhhhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEEEeChH--Hh--------------hccH-HHHhhCCcE
Confidence 234567999998543322 2345555555 68888888875211 00 1122 245578999
Q ss_pred EEEEEEeC
Q 019479 251 DVKLKRIG 258 (340)
Q Consensus 251 ~v~~~~~~ 258 (340)
+.++..+.
T Consensus 419 l~~i~~~D 426 (443)
T PRK13168 419 LKRAGMLD 426 (443)
T ss_pred EEEEEEec
Confidence 99888875
No 150
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.07 E-value=3.6e-10 Score=101.21 Aligned_cols=124 Identities=24% Similarity=0.291 Sum_probs=91.5
Q ss_pred hhhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCC
Q 019479 86 VYDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKE 161 (340)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~ 161 (340)
...+++...-.+..++..++..-.++ +++.|||+|||+|.++...++. +..+|+++|.|..+ +.|.+... ...
T Consensus 34 iheeML~D~VRt~aYr~~i~~n~~lf-~dK~VlDVGcGtGILS~F~akA-GA~~V~aVe~S~ia-~~a~~iv~~N~~~~i 110 (346)
T KOG1499|consen 34 IHEEMLKDSVRTLAYRNAILQNKHLF-KDKTVLDVGCGTGILSMFAAKA-GARKVYAVEASSIA-DFARKIVKDNGLEDV 110 (346)
T ss_pred HHHHHHhhhhhHHHHHHHHhcchhhc-CCCEEEEcCCCccHHHHHHHHh-CcceEEEEechHHH-HHHHHHHHhcCccce
Confidence 34455555555566666666665554 7999999999999999999888 46799999996655 77776532 234
Q ss_pred cEEEEcCCCCCCCCCCCccEEEecCcccccC---CHHHHHHHHHHhcccCcEEE
Q 019479 162 CTIIEGDAEDLPFPTDYADRYVSAGSIEYWP---DPQRGIKEAYRVLKIGGKAC 212 (340)
Q Consensus 162 i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~---d~~~~l~~~~~~LkpgG~l~ 212 (340)
++++.+.++++.+|.+++|+|++-++-+++- -.+.+|-.=-+.|+|||.++
T Consensus 111 i~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 111 ITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred EEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 8899999998777778899999977666542 22345555568899999974
No 151
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.05 E-value=1.1e-09 Score=110.27 Aligned_cols=128 Identities=20% Similarity=0.141 Sum_probs=93.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---C--CCcEEEEcCCCCCC-CCCCCccEEEecC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---L--KECTIIEGDAEDLP-FPTDYADRYVSAG 186 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~--~~i~~~~~d~~~~~-~~~~~fD~v~~~~ 186 (340)
++++|||+|||+|.++..++.. +..+|+++|+|+.+++.|+++.. . .+++++++|+.++- ...++||+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 5789999999999999999986 34579999999999999998742 2 36899999986521 1246799999853
Q ss_pred cc-----------cccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 187 SI-----------EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 187 ~l-----------~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
-. ....+...++..+.++|+|||.+++...... .+ .-.+.+.++|+....+.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~---------------~~--~~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG---------------FK--MDEEGLAKLGLKAEEIT 679 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc---------------CC--hhHHHHHhCCCeEEEEe
Confidence 21 1112334678889999999999977643221 01 12678888999987776
Q ss_pred EeC
Q 019479 256 RIG 258 (340)
Q Consensus 256 ~~~ 258 (340)
..+
T Consensus 680 ~~~ 682 (702)
T PRK11783 680 AKT 682 (702)
T ss_pred cCC
Confidence 654
No 152
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.01 E-value=3.5e-09 Score=92.72 Aligned_cols=102 Identities=15% Similarity=0.128 Sum_probs=80.1
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCC-C-----CCCCCcc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDL-P-----FPTDYAD 180 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~-~-----~~~~~fD 180 (340)
.++++|||+|||+|..+..+++..+ +.+|+++|+++++++.|++++. ..+++++.+|+.+. + .+.++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 3678999999999999999888764 5799999999999999998732 25689999999652 2 1246899
Q ss_pred EEEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 181 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+|++..- -+.....+..+.+.|+|||.+++-+.
T Consensus 147 ~VfiDa~---k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 147 FAFVDAD---KPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred EEEECCC---HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 9998432 12335788999999999999887653
No 153
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=99.01 E-value=5.6e-09 Score=87.87 Aligned_cols=122 Identities=21% Similarity=0.277 Sum_probs=95.1
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCC---CCCCccEEEecCcccc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPF---PTDYADRYVSAGSIEY 190 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~---~~~~fD~v~~~~~l~~ 190 (340)
..++|||||=+...... ..+-.+|+.||+++ ..-.+.+.|+.+.|+ +.++||+|.++.+|.+
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns------------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNf 116 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNS------------QHPGILQQDFMERPLPKNESEKFDVISLSLVLNF 116 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCC------------CCCCceeeccccCCCCCCcccceeEEEEEEEEee
Confidence 46999999976555433 23456899999966 233467889988765 3678999999999999
Q ss_pred cCCHH---HHHHHHHHhcccCcE-----EEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 191 WPDPQ---RGIKEAYRVLKIGGK-----ACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 191 ~~d~~---~~l~~~~~~LkpgG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
++++. +.++++.+.|+|+|. |+++-|..-. ...++.+.+.|.++++..||..++.+....
T Consensus 117 VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv---------~NSRy~~~~~l~~im~~LGf~~~~~~~~~K 184 (219)
T PF11968_consen 117 VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCV---------TNSRYMTEERLREIMESLGFTRVKYKKSKK 184 (219)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHh---------hcccccCHHHHHHHHHhCCcEEEEEEecCe
Confidence 99996 789999999999999 8888654311 122366889999999999999999877654
No 154
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.01 E-value=1.5e-09 Score=93.78 Aligned_cols=103 Identities=23% Similarity=0.173 Sum_probs=81.7
Q ss_pred CEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCC---CCCCCCccEEEecCcc
Q 019479 115 MRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDL---PFPTDYADRYVSAGSI 188 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~---~~~~~~fD~v~~~~~l 188 (340)
..+||||||.|.+...+|++.|...++|||+....+..|.++. ..+|+.++++|+..+ -+++++.|-|++++.=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 5899999999999999999999999999999998888887662 334899999999653 1345589999985432
Q ss_pred cccCCH--------HHHHHHHHHhcccCcEEEEEccC
Q 019479 189 EYWPDP--------QRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 189 ~~~~d~--------~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
-|.... ..+++.+.++|||||.|.+.+..
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 222111 17899999999999999988643
No 155
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.99 E-value=1.1e-08 Score=92.21 Aligned_cols=145 Identities=19% Similarity=0.192 Sum_probs=110.4
Q ss_pred cccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCC---CcEEE
Q 019479 89 HVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---ECTII 165 (340)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~---~i~~~ 165 (340)
..+.+..+...+...+.+.+.. .+|..|||-=||||.+++...-. |++++|.|++..|++-|+.++..- ...+.
T Consensus 174 Pf~~p~s~~P~lAR~mVNLa~v-~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~ 250 (347)
T COG1041 174 PFFRPGSMDPRLARAMVNLARV-KRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVL 250 (347)
T ss_pred CccCcCCcCHHHHHHHHHHhcc-ccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEE
Confidence 3445555666666666666665 58999999999999999998776 899999999999999999885543 34344
Q ss_pred Ec-CCCCCCCCCCCccEEEecCccccc-----CC----HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCC
Q 019479 166 EG-DAEDLPFPTDYADRYVSAGSIEYW-----PD----PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFP 235 (340)
Q Consensus 166 ~~-d~~~~~~~~~~fD~v~~~~~l~~~-----~d----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 235 (340)
.. |+..+|++++++|.|++---..-. .. ..++++.+.++||+||++++..+..
T Consensus 251 ~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~----------------- 313 (347)
T COG1041 251 KVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRD----------------- 313 (347)
T ss_pred EecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCc-----------------
Confidence 44 999999988899999984333221 11 1378999999999999999886521
Q ss_pred CHHHHHHHHHHCCCcEEEEEEe
Q 019479 236 KEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 236 ~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
..+.+++.||+++.....
T Consensus 314 ----~~~~~~~~~f~v~~~~~~ 331 (347)
T COG1041 314 ----PRHELEELGFKVLGRFTM 331 (347)
T ss_pred ----chhhHhhcCceEEEEEEE
Confidence 234778899999877665
No 156
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.99 E-value=2.1e-09 Score=91.03 Aligned_cols=103 Identities=22% Similarity=0.205 Sum_probs=69.9
Q ss_pred CCCEEEEEcCccchH----HHHHHHhC---C--CceEEEEeCCHHHHHHHHHhC----------------------C---
Q 019479 113 RNMRVVDVGGGTGFT----TLGIVKHV---D--AKNVTILDQSPHQLAKAKQKE----------------------P--- 158 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~----~~~l~~~~---~--~~~v~g~D~s~~~~~~a~~~~----------------------~--- 158 (340)
+..+|+..||++|.- ++.+.+.. . ..+++|+|+|+.+++.|++-. .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 567999999999953 33344411 1 369999999999999998631 0
Q ss_pred ------CCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEEc
Q 019479 159 ------LKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 159 ------~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~ 215 (340)
..+|+|...|+.+.+...+.||+|+|.+++.++++. .++++.+++.|+|||.|++-.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 045899999998744456789999999999999766 489999999999999998864
No 157
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.99 E-value=4.5e-09 Score=98.63 Aligned_cols=104 Identities=19% Similarity=0.077 Sum_probs=77.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---C--CCcEEEEcCCCCCC----CCCCCccEEE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---L--KECTIIEGDAEDLP----FPTDYADRYV 183 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~--~~i~~~~~d~~~~~----~~~~~fD~v~ 183 (340)
++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.|+++.. . .+++++++|+.+.. ...++||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 5789999999999998876654 34599999999999999998732 2 36889999996631 1245799999
Q ss_pred ecCccccc---------CCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 184 SAGSIEYW---------PDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 184 ~~~~l~~~---------~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+.--...- .+...+++.+.++|+|||.++.....
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 87443211 12234556778999999999876543
No 158
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.99 E-value=6.3e-09 Score=88.43 Aligned_cols=118 Identities=13% Similarity=0.059 Sum_probs=81.4
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCC-
Q 019479 97 TEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDL- 172 (340)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~- 172 (340)
...+++.++..+.....+.+|||+|||+|.++..++.+. ..+|+++|.++.+++.++++. ...+++++++|+.+.
T Consensus 37 ~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l 115 (199)
T PRK10909 37 TDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFL 115 (199)
T ss_pred CHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHH
Confidence 444545455444322357899999999999998765553 479999999999999998763 335789999998652
Q ss_pred CCCCCCccEEEecCcccccCCHHHHHHHHHHh--cccCcEEEEEcc
Q 019479 173 PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRV--LKIGGKACVIGP 216 (340)
Q Consensus 173 ~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~--LkpgG~l~i~~~ 216 (340)
+....+||+|+++--+.. .-...+++.+... |+|++.+++...
T Consensus 116 ~~~~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 116 AQPGTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred hhcCCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 223456999999766432 1223455555543 788888887754
No 159
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.97 E-value=3.9e-09 Score=94.37 Aligned_cols=103 Identities=15% Similarity=0.105 Sum_probs=78.7
Q ss_pred CCCEEEEEcCccchH----HHHHHHhCC----CceEEEEeCCHHHHHHHHHhC-------------------C----C--
Q 019479 113 RNMRVVDVGGGTGFT----TLGIVKHVD----AKNVTILDQSPHQLAKAKQKE-------------------P----L-- 159 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~----~~~l~~~~~----~~~v~g~D~s~~~~~~a~~~~-------------------~----~-- 159 (340)
...+|+..||+||.- ++.+.+..+ ..+|+|+|+|+.+++.|++-. . .
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 347999999999963 333444322 368999999999999998641 0 0
Q ss_pred ---------CCcEEEEcCCCCCCCC-CCCccEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEEc
Q 019479 160 ---------KECTIIEGDAEDLPFP-TDYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 160 ---------~~i~~~~~d~~~~~~~-~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~ 215 (340)
..|+|...|+.+.+++ .+.||+|+|.+++.|+++. .++++++.+.|+|||+|++-.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 2478888999764433 5789999999999999654 589999999999999887653
No 160
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.95 E-value=1.3e-08 Score=93.20 Aligned_cols=122 Identities=11% Similarity=0.046 Sum_probs=85.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCC-CCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPF-PTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~-~~~~fD~v~~~~~l 188 (340)
++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++. ...+++|+++|+.++.. ..++||+|++.---
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr 250 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPR 250 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCC
Confidence 4689999999999999999986 689999999999999998763 33579999999976432 23569999986331
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
. .....+.+....++|++.+++...... -..++..+ .||+..++..+.
T Consensus 251 ~---G~~~~~~~~l~~~~~~~ivyvsc~p~t----------------~~rd~~~l---~~y~~~~~~~~D 298 (315)
T PRK03522 251 R---GIGKELCDYLSQMAPRFILYSSCNAQT----------------MAKDLAHL---PGYRIERVQLFD 298 (315)
T ss_pred C---CccHHHHHHHHHcCCCeEEEEECCccc----------------chhHHhhc---cCcEEEEEEEec
Confidence 1 111223333444678777776643211 12344333 599988887764
No 161
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.95 E-value=4.6e-09 Score=92.57 Aligned_cols=106 Identities=21% Similarity=0.188 Sum_probs=83.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC-----C----CcEEEEcCCCC------CCCCC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----K----ECTIIEGDAED------LPFPT 176 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-----~----~i~~~~~d~~~------~~~~~ 176 (340)
+++..++|+|||.|..++..-+. +-..++|+|+++..++.|+++... . .+.|+.+|... +++.+
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 47889999999999998887665 347899999999999999987421 1 25778888743 34456
Q ss_pred CCccEEEecCccccc-CCH---HHHHHHHHHhcccCcEEEEEccCC
Q 019479 177 DYADRYVSAGSIEYW-PDP---QRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~-~d~---~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
.+||+|-|-+++|+. .+. +.+|+++.+.|||||+++-+.|..
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 669999999999864 333 478999999999999998876543
No 162
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.92 E-value=2e-08 Score=96.07 Aligned_cols=136 Identities=23% Similarity=0.293 Sum_probs=92.7
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCC----
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDL---- 172 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~---- 172 (340)
+...+...+.. .++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++ ...|++++.+|+.+.
T Consensus 280 l~~~~~~~l~~-~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~ 356 (431)
T TIGR00479 280 LVDRALEALEL-QGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQ 356 (431)
T ss_pred HHHHHHHHhcc-CCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHH
Confidence 33444444332 35689999999999999999987 568999999999999999873 346899999998652
Q ss_pred CCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEE
Q 019479 173 PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDV 252 (340)
Q Consensus 173 ~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 252 (340)
+..+++||+|++.-.-.. -...+++.+.+ ++|++.+++... +. |...-.+.|.+.||+..
T Consensus 357 ~~~~~~~D~vi~dPPr~G--~~~~~l~~l~~-l~~~~ivyvsc~--p~---------------tlard~~~l~~~gy~~~ 416 (431)
T TIGR00479 357 PWAGQIPDVLLLDPPRKG--CAAEVLRTIIE-LKPERIVYVSCN--PA---------------TLARDLEFLCKEGYGIT 416 (431)
T ss_pred HhcCCCCCEEEECcCCCC--CCHHHHHHHHh-cCCCEEEEEcCC--HH---------------HHHHHHHHHHHCCeeEE
Confidence 233457999997433111 12456666554 789887776532 11 11222345677899987
Q ss_pred EEEEeC
Q 019479 253 KLKRIG 258 (340)
Q Consensus 253 ~~~~~~ 258 (340)
.+..+.
T Consensus 417 ~~~~~D 422 (431)
T TIGR00479 417 WVQPVD 422 (431)
T ss_pred EEEEec
Confidence 777654
No 163
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=1.2e-07 Score=77.92 Aligned_cols=120 Identities=18% Similarity=0.225 Sum_probs=86.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
.+++|+|+|||||.+++..+-. +..+|+++|+++++++.++++.. ..++.|+++|+.+. ...+|.|+++--+.-
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~l-Ga~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALL-GASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhc-CCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc---CCccceEEECCCCcc
Confidence 6889999999999999987765 45899999999999999998743 35699999999875 456899998765543
Q ss_pred c---CCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 191 W---PDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 191 ~---~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
. .|. .++..+.+.- -+++-+.. .-+.+-+.+..+++|+.+......
T Consensus 121 ~~rhaDr-~Fl~~Ale~s---~vVYsiH~-----------------a~~~~f~~~~~~~~G~~v~~~~~~ 169 (198)
T COG2263 121 QRRHADR-PFLLKALEIS---DVVYSIHK-----------------AGSRDFVEKFAADLGGTVTHIERA 169 (198)
T ss_pred ccccCCH-HHHHHHHHhh---heEEEeec-----------------cccHHHHHHHHHhcCCeEEEEEEE
Confidence 3 222 4555555443 12221111 125677888999999998777554
No 164
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.90 E-value=2.2e-08 Score=88.47 Aligned_cols=118 Identities=19% Similarity=0.136 Sum_probs=87.2
Q ss_pred HHHHHHhccccCCC-C-CCCEEEEEcCccch----HHHHHHHhCC-----CceEEEEeCCHHHHHHHHHhC---------
Q 019479 98 EDMRDEALEPADLF-D-RNMRVVDVGGGTGF----TTLGIVKHVD-----AKNVTILDQSPHQLAKAKQKE--------- 157 (340)
Q Consensus 98 ~~~~~~~l~~~~~~-~-~~~~vLDiGcG~G~----~~~~l~~~~~-----~~~v~g~D~s~~~~~~a~~~~--------- 157 (340)
+.+...+++.+... . ..-+|+-.||+||. .++.+.+..+ ..+|+|+|+|..+++.|++-.
T Consensus 79 ~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~ 158 (268)
T COG1352 79 EELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRG 158 (268)
T ss_pred HHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhcc
Confidence 44455555432211 1 36799999999995 4555556554 479999999999999998521
Q ss_pred -------------CC----------CCcEEEEcCCCCCCCCCCCccEEEecCcccccCCH--HHHHHHHHHhcccCcEEE
Q 019479 158 -------------PL----------KECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKAC 212 (340)
Q Consensus 158 -------------~~----------~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~ 212 (340)
.. ..|.|...|+...+...+.||+|+|.+|+.+++.+ .++++.++..|+|||.|+
T Consensus 159 ~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~Lf 238 (268)
T COG1352 159 LPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLF 238 (268)
T ss_pred CCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEE
Confidence 00 24788888886654355669999999999999766 489999999999999998
Q ss_pred EEc
Q 019479 213 VIG 215 (340)
Q Consensus 213 i~~ 215 (340)
+-.
T Consensus 239 lG~ 241 (268)
T COG1352 239 LGH 241 (268)
T ss_pred Ecc
Confidence 853
No 165
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.89 E-value=5.6e-09 Score=87.13 Aligned_cols=106 Identities=19% Similarity=0.142 Sum_probs=72.7
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC------CCCcEEEEcCCCCCC----CCCCCccE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECTIIEGDAEDLP----FPTDYADR 181 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~------~~~i~~~~~d~~~~~----~~~~~fD~ 181 (340)
.++.+|||+|||+|..++.++...+..+|+..|..+ .++..+.+.. ..++.+...|..+.. ....+||+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 478999999999999999999886678999999988 8887776622 355777777774411 23467999
Q ss_pred EEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 182 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
|++..+++.-.....+++.+.++|+++|.+++.....
T Consensus 123 IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 9999999987777899999999999999977765543
No 166
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.89 E-value=4e-08 Score=89.22 Aligned_cols=146 Identities=16% Similarity=0.116 Sum_probs=94.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC-----CCcEEEE-cCCCCCC----CCCCCccEE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECTIIE-GDAEDLP----FPTDYADRY 182 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-----~~i~~~~-~d~~~~~----~~~~~fD~v 182 (340)
.+.+|||||||+|.....++.+.++.+++|+|+++.+++.|+++... .++++.. .|...+. .+.+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 46899999999998887777777789999999999999999987432 2466643 3332211 245689999
Q ss_pred EecCcccccCCHH-----HHHHHH----------------HHhcccCcEEEEEccCCCchhHh----hHhhhHhhcCCCH
Q 019479 183 VSAGSIEYWPDPQ-----RGIKEA----------------YRVLKIGGKACVIGPVYPTFWLS----RFFADVWMLFPKE 237 (340)
Q Consensus 183 ~~~~~l~~~~d~~-----~~l~~~----------------~~~LkpgG~l~i~~~~~~~~~~~----~~~~~~~~~~~~~ 237 (340)
+|+--++.-.+.. .-.+.+ .+++.+||.+.++.......... .++..+.....+.
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l 273 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVSKKENL 273 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEeeccCCH
Confidence 9997776543321 122222 23455788776665443322100 0111111123478
Q ss_pred HHHHHHHHHCCCcEEEEEEeC
Q 019479 238 EEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 238 ~~~~~~l~~aGF~~v~~~~~~ 258 (340)
+.+.+.|++.|...+.+.++.
T Consensus 274 ~~l~~~L~~~~~~~~~~~e~~ 294 (321)
T PRK11727 274 PPLYRALKKVGAVEVKTIEMA 294 (321)
T ss_pred HHHHHHHHHcCCceEEEEEEe
Confidence 999999999999888877763
No 167
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.89 E-value=2e-08 Score=84.16 Aligned_cols=150 Identities=19% Similarity=0.166 Sum_probs=101.2
Q ss_pred hhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCce---------EEEEeCCHHHHHHHHHhC
Q 019479 87 YDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKN---------VTILDQSPHQLAKAKQKE 157 (340)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~---------v~g~D~s~~~~~~a~~~~ 157 (340)
|+....+....+.+...++..+.. +++..|||--||+|.+.++.+....... ++|.|+++.+++.+++++
T Consensus 3 yR~~~~~a~L~~~lA~~ll~la~~-~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~ 81 (179)
T PF01170_consen 3 YRPFFGPAPLRPTLAAALLNLAGW-RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENL 81 (179)
T ss_dssp TTTSSSSTSS-HHHHHHHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHH
T ss_pred CcCCCCCCCCCHHHHHHHHHHhCC-CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHH
Confidence 444455666777777777777765 4788999999999999998877755555 899999999999999873
Q ss_pred C----CCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCH--------HHHHHHHHHhcccCcEEEEEccCCCchhHhh
Q 019479 158 P----LKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDP--------QRGIKEAYRVLKIGGKACVIGPVYPTFWLSR 225 (340)
Q Consensus 158 ~----~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~--------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~ 225 (340)
. ...+.+.+.|+.++++.++++|+|+++--...-... ..+++++.++|++ ..+++....
T Consensus 82 ~~ag~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~-------- 152 (179)
T PF01170_consen 82 KAAGVEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSN-------- 152 (179)
T ss_dssp HHTT-CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESC--------
T ss_pred HhcccCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECC--------
Confidence 2 234789999999988778899999997655532111 1567888889998 333333221
Q ss_pred HhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 226 FFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
..+.+.+...+++..+....+
T Consensus 153 ------------~~~~~~~~~~~~~~~~~~~~~ 173 (179)
T PF01170_consen 153 ------------RELEKALGLKGWRKRKLYNGH 173 (179)
T ss_dssp ------------CCHHHHHTSTTSEEEEEEETT
T ss_pred ------------HHHHHHhcchhhceEEEEEec
Confidence 234556666777776665543
No 168
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.88 E-value=2.2e-08 Score=88.66 Aligned_cols=108 Identities=24% Similarity=0.295 Sum_probs=79.6
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCCC
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPTD 177 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~~ 177 (340)
..+++....+ .++.|||+|||+|.++...+.. +..+|++++. .+|.+.|++... .++|.++.+.+++..++ +
T Consensus 167 ~Ail~N~sDF-~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-E 242 (517)
T KOG1500|consen 167 RAILENHSDF-QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIELP-E 242 (517)
T ss_pred HHHHhccccc-CCcEEEEecCCccHHHHHHHHh-CcceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccCc-h
Confidence 3444444333 7899999999999999988877 4579999999 678888887643 35688999999988765 4
Q ss_pred CccEEEecCcccccCCHH--HHHHHHHHhcccCcEEEE
Q 019479 178 YADRYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACV 213 (340)
Q Consensus 178 ~fD~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~l~i 213 (340)
+.|++|+--+-..+-+.. +..-.+++.|||.|.++=
T Consensus 243 k~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 243 KVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred hccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 589999754443333332 344566799999999864
No 169
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.87 E-value=1.3e-08 Score=86.89 Aligned_cols=104 Identities=16% Similarity=0.255 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhCC----CCCcEEEE-cCCCC-CC-CCCCCccEEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECTIIE-GDAED-LP-FPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~-~d~~~-~~-~~~~~fD~v~ 183 (340)
.++++|||||++.|..++.|+...| ..+++.+|.++++.+.|++++. .++++.+. +|..+ +. ...++||+|+
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 4789999999999999999999998 6899999999999999998743 23477777 47743 22 3568999999
Q ss_pred ecCcccccCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
.-.. -.+...++..+.+.|+|||.+++-+...
T Consensus 138 IDad---K~~yp~~le~~~~lLr~GGliv~DNvl~ 169 (219)
T COG4122 138 IDAD---KADYPEYLERALPLLRPGGLIVADNVLF 169 (219)
T ss_pred EeCC---hhhCHHHHHHHHHHhCCCcEEEEeeccc
Confidence 7431 1233589999999999999998765433
No 170
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.87 E-value=1e-08 Score=91.95 Aligned_cols=86 Identities=20% Similarity=0.214 Sum_probs=67.8
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCc
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYA 179 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~f 179 (340)
+...+++.+.. .++.+|||||||+|.++..++++. .+|+|+|+++.+++.++++...++++++++|+.++++++-.+
T Consensus 30 i~~~i~~~l~~-~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~ 106 (272)
T PRK00274 30 ILDKIVDAAGP-QPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQP 106 (272)
T ss_pred HHHHHHHhcCC-CCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCc
Confidence 44555555544 467899999999999999999984 499999999999999998765578999999998876543225
Q ss_pred cEEEecCcc
Q 019479 180 DRYVSAGSI 188 (340)
Q Consensus 180 D~v~~~~~l 188 (340)
|.|+++--.
T Consensus 107 ~~vv~NlPY 115 (272)
T PRK00274 107 LKVVANLPY 115 (272)
T ss_pred ceEEEeCCc
Confidence 888876543
No 171
>PLN02823 spermine synthase
Probab=98.87 E-value=1.9e-08 Score=92.18 Aligned_cols=102 Identities=18% Similarity=0.161 Sum_probs=79.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-------CCCcEEEEcCCCC-CCCCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECTIIEGDAED-LPFPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-------~~~i~~~~~d~~~-~~~~~~~fD~v~~ 184 (340)
.+++||.||+|.|..+..+++..+..+++.+|+++.+++.|++... .++++++.+|... +....++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 5689999999999999999887556789999999999999998742 4689999999865 3334568999998
Q ss_pred cCcccccC-C------HHHHHH-HHHHhcccCcEEEEEc
Q 019479 185 AGSIEYWP-D------PQRGIK-EAYRVLKIGGKACVIG 215 (340)
Q Consensus 185 ~~~l~~~~-d------~~~~l~-~~~~~LkpgG~l~i~~ 215 (340)
... .... . ..++++ .+.+.|+|||.+++..
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 631 1110 0 136787 8999999999987763
No 172
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.85 E-value=3.2e-08 Score=85.69 Aligned_cols=131 Identities=20% Similarity=0.082 Sum_probs=80.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHH-HHHhCCCCCc-EEEEcCCCC-----CCCCCCCccEEEe
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK-AKQKEPLKEC-TIIEGDAED-----LPFPTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~-a~~~~~~~~i-~~~~~d~~~-----~~~~~~~fD~v~~ 184 (340)
.++.+|||+|||+|.++..+++. +..+|+++|+++.|+.. .++. +++ .+...|+.. .+..-..+|++++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~---~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsfi 149 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQD---ERVKVLERTNIRYVTPADIFPDFATFDVSFI 149 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcC---CCeeEeecCCcccCCHhHcCCCceeeeEEEe
Confidence 37889999999999999999987 45789999999987775 3322 222 233334432 2212235777666
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhH-------hhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRF-------FADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
+..+ .+..+.+.|+| |.+++.- .|.+...+. ..+......-.+++...+.+.||++..+..-
T Consensus 150 S~~~--------~l~~i~~~l~~-~~~~~L~--KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 218 (228)
T TIGR00478 150 SLIS--------ILPELDLLLNP-NDLTLLF--KPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKIIFS 218 (228)
T ss_pred ehHh--------HHHHHHHHhCc-CeEEEEc--ChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeEEEC
Confidence 4433 57889999999 7665542 222211110 0010111123567777888899998766553
No 173
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.85 E-value=8.3e-08 Score=84.65 Aligned_cols=142 Identities=23% Similarity=0.150 Sum_probs=102.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---------------------------------C
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---------------------------------P 158 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---------------------------------~ 158 (340)
....+||--|||-|+++..++.. |..+.|.|.|--|+-...-.+ .
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 35689999999999999999998 899999999998854432110 0
Q ss_pred ----------CCCcEEEEcCCCCCCCCC---CCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhh
Q 019479 159 ----------LKECTIIEGDAEDLPFPT---DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSR 225 (340)
Q Consensus 159 ----------~~~i~~~~~d~~~~~~~~---~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~ 225 (340)
..++....||+.+.-..+ ++||+|+..+-+....+.-..++.|.++|||||.-+=..|..-+.....
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~ 212 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS 212 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCC
Confidence 123566778886654333 6899999987777777777999999999999996655555432221110
Q ss_pred HhhhHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 019479 226 FFADVWMLFPKEEEYIEWFQKAGFKDVKLKR 256 (340)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 256 (340)
...-.....+.+++..+.++.||++++.+.
T Consensus 213 -~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 213 -IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred -CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 000011245899999999999999987766
No 174
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.83 E-value=8.8e-08 Score=80.24 Aligned_cols=126 Identities=21% Similarity=0.290 Sum_probs=93.9
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHH---HhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK---QKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~---~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
+.+++|||+|.|.-++.++-.+|..+++.+|.+..-+...+ .....+|++++++.+++ +....+||+|++..+
T Consensus 49 ~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv--- 124 (184)
T PF02527_consen 49 GKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAV--- 124 (184)
T ss_dssp CSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESS---
T ss_pred CceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehh---
Confidence 33899999999999999999999999999999996655544 44666899999999988 446778999999854
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
.+...+++-+...+++||++++.--.... . ..++....++..|.+...+..+.
T Consensus 125 -~~l~~l~~~~~~~l~~~G~~l~~KG~~~~---~-----------El~~~~~~~~~~~~~~~~v~~~~ 177 (184)
T PF02527_consen 125 -APLDKLLELARPLLKPGGRLLAYKGPDAE---E-----------ELEEAKKAWKKLGLKVLSVPEFE 177 (184)
T ss_dssp -SSHHHHHHHHGGGEEEEEEEEEEESS--H---H-----------HHHTHHHHHHCCCEEEEEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEEcCCChH---H-----------HHHHHHhHHHHhCCEEeeecccc
Confidence 36678899999999999998877422110 0 12445566777888887777663
No 175
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.80 E-value=2.3e-08 Score=85.37 Aligned_cols=104 Identities=21% Similarity=0.283 Sum_probs=81.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCCCC-CC-----CCCCCcc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDAED-LP-----FPTDYAD 180 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~~~-~~-----~~~~~fD 180 (340)
.++++||||||++|..+..+++..| +++|+.+|.+++..+.|++.+ . ..+++++.+|+.+ ++ ...++||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 3678999999999999999999886 589999999999999998763 2 2579999999954 22 1135799
Q ss_pred EEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 181 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
+|++... -.+....+..+.+.|+|||.+++-+...
T Consensus 124 ~VFiDa~---K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 124 FVFIDAD---KRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp EEEEEST---GGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred EEEEccc---ccchhhHHHHHhhhccCCeEEEEccccc
Confidence 9998652 2244578889999999999998876543
No 176
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.80 E-value=3.5e-08 Score=87.83 Aligned_cols=86 Identities=27% Similarity=0.327 Sum_probs=69.2
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCCCCCCC
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLPFPTD 177 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~~~~~~ 177 (340)
.+...+++.+.. .++.+|||||||+|.++..+++. +.+|+++|+++.+++.++++.. ..+++++++|+.+++++
T Consensus 16 ~~~~~iv~~~~~-~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~-- 90 (258)
T PRK14896 16 RVVDRIVEYAED-TDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP-- 90 (258)
T ss_pred HHHHHHHHhcCC-CCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch--
Confidence 344555555443 36789999999999999999998 5799999999999999998754 46899999999887654
Q ss_pred CccEEEecCccc
Q 019479 178 YADRYVSAGSIE 189 (340)
Q Consensus 178 ~fD~v~~~~~l~ 189 (340)
.||.|+++-.++
T Consensus 91 ~~d~Vv~NlPy~ 102 (258)
T PRK14896 91 EFNKVVSNLPYQ 102 (258)
T ss_pred hceEEEEcCCcc
Confidence 489999876654
No 177
>PLN02476 O-methyltransferase
Probab=98.79 E-value=2.7e-08 Score=88.38 Aligned_cols=103 Identities=16% Similarity=0.161 Sum_probs=80.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCCCC-CC-C----CCCCcc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDAED-LP-F----PTDYAD 180 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~~~-~~-~----~~~~fD 180 (340)
.++++||||||++|..+..++...+ +.+++.+|.+++..+.|++++ + .++++++.+|+.+ ++ + ..++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 4678999999999999999998764 578999999999999998773 2 2479999999854 22 1 136799
Q ss_pred EEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 181 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+|+...- -.+....++.+.+.|+|||.+++-+..
T Consensus 197 ~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 197 FAFVDAD---KRMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred EEEECCC---HHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 9998532 123357889999999999999876543
No 178
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=1.5e-07 Score=76.51 Aligned_cols=127 Identities=13% Similarity=0.117 Sum_probs=92.7
Q ss_pred CCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
..-++|||||+|..+..++... |+..+.++|++|.+++..++.+. ..++..++.|+..- +..++.|+++.+--..-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcCc
Confidence 6789999999999999988875 55789999999999988776533 34577888898652 23488999887644332
Q ss_pred cCC-----------------H----HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCC
Q 019479 191 WPD-----------------P----QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGF 249 (340)
Q Consensus 191 ~~d-----------------~----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 249 (340)
-++ - ++++..+-.+|.|.|++++...... .++++.+.++.-||
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N----------------~p~ei~k~l~~~g~ 186 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN----------------KPKEILKILEKKGY 186 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc----------------CHHHHHHHHhhccc
Confidence 211 1 2456666678889999988754322 46788889999999
Q ss_pred cEEEEEEe
Q 019479 250 KDVKLKRI 257 (340)
Q Consensus 250 ~~v~~~~~ 257 (340)
........
T Consensus 187 ~~~~~~~R 194 (209)
T KOG3191|consen 187 GVRIAMQR 194 (209)
T ss_pred ceeEEEEE
Confidence 87655443
No 179
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.78 E-value=2.6e-08 Score=96.73 Aligned_cols=105 Identities=10% Similarity=0.096 Sum_probs=82.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCC--CCCCCCccEEEecCc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDL--PFPTDYADRYVSAGS 187 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~--~~~~~~fD~v~~~~~ 187 (340)
.+..+||||||.|.++..+|..+|...++|+|++...+..+.++ ....|+.+++.|+..+ -++++++|.|++++.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 46789999999999999999999999999999999877776654 3346888888887532 267888999998544
Q ss_pred ccccCCH--------HHHHHHHHHhcccCcEEEEEccC
Q 019479 188 IEYWPDP--------QRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 188 l~~~~d~--------~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
=-|.... ..+++.+.+.|||||.+.+.+..
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 3332211 17899999999999999988643
No 180
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.78 E-value=5.5e-08 Score=86.77 Aligned_cols=101 Identities=22% Similarity=0.268 Sum_probs=81.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-------CCCcEEEEcCCCCC-CCCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECTIIEGDAEDL-PFPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-------~~~i~~~~~d~~~~-~~~~~~fD~v~~ 184 (340)
..++||-||.|.|..++.+++..+-.+++.+|+++..++.+++.+. +++++++.+|..++ .-..++||+|++
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 3479999999999999999999777899999999999999998732 47889999998653 223347999998
Q ss_pred cCcccccCCH------HHHHHHHHHhcccCcEEEEEc
Q 019479 185 AGSIEYWPDP------QRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 185 ~~~l~~~~d~------~~~l~~~~~~LkpgG~l~i~~ 215 (340)
...=. . .+ ..+++.|++.|+++|.++...
T Consensus 156 D~tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 156 DSTDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred cCCCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 54322 1 22 589999999999999998883
No 181
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.74 E-value=3.4e-07 Score=73.49 Aligned_cols=115 Identities=23% Similarity=0.303 Sum_probs=91.1
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-----
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----- 173 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----- 173 (340)
+.+.+...... ..+.-|||+|.|||.++..++++ .+...+++++.|++......++. +.++++.+|+.++.
T Consensus 36 lA~~M~s~I~p-esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~--p~~~ii~gda~~l~~~l~e 112 (194)
T COG3963 36 LARKMASVIDP-ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY--PGVNIINGDAFDLRTTLGE 112 (194)
T ss_pred HHHHHHhccCc-ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC--CCccccccchhhHHHHHhh
Confidence 44444444443 57889999999999999999887 34578999999999999988776 44568899997754
Q ss_pred CCCCCccEEEecCcccccCCHH--HHHHHHHHhcccCcEEEEEccC
Q 019479 174 FPTDYADRYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 174 ~~~~~fD~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
..+..||.|++.--+-.++-.. ++|+.+...|.+||.++.....
T Consensus 113 ~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 113 HKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred cCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 4567799999988777776443 7899999999999999877654
No 182
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.73 E-value=1.7e-07 Score=83.16 Aligned_cols=85 Identities=24% Similarity=0.315 Sum_probs=66.3
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCCCCCCC
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLPFPTD 177 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~~~~~~ 177 (340)
.+...+++.+.. .++.+|||||||+|.++..+++.. ..|+++|+++.+++.++++.. .++++++.+|+.+.++.
T Consensus 16 ~i~~~i~~~~~~-~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~-- 90 (253)
T TIGR00755 16 SVIQKIVEAANV-LEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP-- 90 (253)
T ss_pred HHHHHHHHhcCC-CCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--
Confidence 345555555544 367899999999999999999984 579999999999999998754 46899999999887654
Q ss_pred Ccc---EEEecCcc
Q 019479 178 YAD---RYVSAGSI 188 (340)
Q Consensus 178 ~fD---~v~~~~~l 188 (340)
.+| +|+++-.+
T Consensus 91 ~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 DFPKQLKVVSNLPY 104 (253)
T ss_pred HcCCcceEEEcCCh
Confidence 466 66665443
No 183
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.72 E-value=1.6e-07 Score=88.06 Aligned_cols=122 Identities=10% Similarity=-0.000 Sum_probs=85.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCC-CCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLP-FPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~-~~~~~fD~v~~~~~l 188 (340)
++.+|||++||+|.++..++.. +.+|+|+|+++.+++.|+++. ...+++++++|+.+.. ...++||+|++.---
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 4679999999999999999975 679999999999999999773 3357899999996532 122459999986442
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
..+ ...+++.+. .++|++.+++.... .. + ..++..+ .||++.++..+.
T Consensus 311 ~G~--~~~~l~~l~-~~~p~~ivyvsc~p--~T----l----------aRDl~~L---~gy~l~~~~~~D 358 (374)
T TIGR02085 311 RGI--GKELCDYLS-QMAPKFILYSSCNA--QT----M----------AKDIAEL---SGYQIERVQLFD 358 (374)
T ss_pred CCC--cHHHHHHHH-hcCCCeEEEEEeCH--HH----H----------HHHHHHh---cCceEEEEEEec
Confidence 211 134555554 47898888877421 11 0 2333333 699988887765
No 184
>PRK00536 speE spermidine synthase; Provisional
Probab=98.71 E-value=1.5e-07 Score=82.91 Aligned_cols=95 Identities=17% Similarity=0.055 Sum_probs=76.0
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh-------CCCCCcEEEEcCCCCCCCCCCCccEEEe
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-------EPLKECTIIEGDAEDLPFPTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~-------~~~~~i~~~~~d~~~~~~~~~~fD~v~~ 184 (340)
+.+++||-||+|.|..+++++++ + .+|+.+|+++++++.+++. ..+++++++.. +.+ ...++||+||+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIv 145 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIIC 145 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEE
Confidence 46799999999999999999998 4 4999999999999999984 34577777652 221 12467999998
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
-.. ....+++.+.+.|+|||.++....
T Consensus 146 Ds~-----~~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 146 LQE-----PDIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred cCC-----CChHHHHHHHHhcCCCcEEEECCC
Confidence 642 446788999999999999988753
No 185
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=4.8e-08 Score=81.21 Aligned_cols=97 Identities=22% Similarity=0.260 Sum_probs=78.7
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhCC-------------CCCcEEEEcCCCCCCCCC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD--AKNVTILDQSPHQLAKAKQKEP-------------LKECTIIEGDAEDLPFPT 176 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~~v~g~D~s~~~~~~a~~~~~-------------~~~i~~~~~d~~~~~~~~ 176 (340)
.++.+.||+|+|+|.++..++.... +..++|||.-++.++.+++++. ..++.++.+|......+.
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~ 160 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQ 160 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCcc
Confidence 5899999999999999999887753 3455999999999999987632 245778899998776678
Q ss_pred CCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEE
Q 019479 177 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
.+||.|++... .....+++...|++||++++-
T Consensus 161 a~YDaIhvGAa------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 161 APYDAIHVGAA------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CCcceEEEccC------ccccHHHHHHhhccCCeEEEe
Confidence 88999998743 334568888999999999875
No 186
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.66 E-value=3e-08 Score=92.99 Aligned_cols=101 Identities=22% Similarity=0.264 Sum_probs=75.6
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEE---eCCHHHHHHHHHhCCCCCcEEEEcC--CCCCCCCCCCccEEEecCc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTIL---DQSPHQLAKAKQKEPLKECTIIEGD--AEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~---D~s~~~~~~a~~~~~~~~i~~~~~d--~~~~~~~~~~fD~v~~~~~ 187 (340)
.-..+||+|||+|.|+..|+++ +..+..+ |..+.+++.|-++. +-.+.+- -..+|++++.||+|+|..+
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleRG----vpa~~~~~~s~rLPfp~~~fDmvHcsrc 190 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALERG----VPAMIGVLGSQRLPFPSNAFDMVHCSRC 190 (506)
T ss_pred ceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhcC----cchhhhhhccccccCCccchhhhhcccc
Confidence 3457999999999999999998 5444333 45556777777652 2223233 3568999999999999999
Q ss_pred ccccCCH-HHHHHHHHHhcccCcEEEEEccCCC
Q 019479 188 IEYWPDP-QRGIKEAYRVLKIGGKACVIGPVYP 219 (340)
Q Consensus 188 l~~~~d~-~~~l~~~~~~LkpgG~l~i~~~~~~ 219 (340)
+..+... ...|-++.|+|+|||++++..+...
T Consensus 191 ~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 191 LIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred cccchhcccceeehhhhhhccCceEEecCCccc
Confidence 9877544 4678899999999999998876443
No 187
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.65 E-value=1e-07 Score=86.00 Aligned_cols=86 Identities=28% Similarity=0.387 Sum_probs=67.4
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCC
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPF 174 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~ 174 (340)
.+...++..... .++.+|||||||+|.++..+++. +.+|+++|+++.+++.++++.. ..+++++++|+.+.++
T Consensus 23 ~i~~~Iv~~~~~-~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 23 LVLDKIVEKAAI-KPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF 99 (294)
T ss_pred HHHHHHHHhcCC-CCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc
Confidence 344555555544 46789999999999999999987 5789999999999999998742 3679999999977654
Q ss_pred CCCCccEEEecCccc
Q 019479 175 PTDYADRYVSAGSIE 189 (340)
Q Consensus 175 ~~~~fD~v~~~~~l~ 189 (340)
..||.|+++--++
T Consensus 100 --~~~d~VvaNlPY~ 112 (294)
T PTZ00338 100 --PYFDVCVANVPYQ 112 (294)
T ss_pred --cccCEEEecCCcc
Confidence 3589988765443
No 188
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=5.7e-07 Score=77.79 Aligned_cols=127 Identities=20% Similarity=0.257 Sum_probs=99.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCC--CCCCccEEEe
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPF--PTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~--~~~~fD~v~~ 184 (340)
.+|.+|+|-|+|+|.++..+++.. |-++++-+|..+.-.+.|.+.+. .+|+++.+-|+....| .+..+|+|++
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVFL 183 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVFL 183 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceEEE
Confidence 589999999999999999999986 55899999998888888876532 3689999999977544 3567999998
Q ss_pred cCcccccCCHHHHHHHHHHhcccCc-EEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGG-KACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG-~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
+++.|..++-.++.+||.+| ++....+... ..+.-.+.|+++||..++..++..
T Consensus 184 -----DlPaPw~AiPha~~~lk~~g~r~csFSPCIE----------------Qvqrtce~l~~~gf~~i~~vEv~~ 238 (314)
T KOG2915|consen 184 -----DLPAPWEAIPHAAKILKDEGGRLCSFSPCIE----------------QVQRTCEALRSLGFIEIETVEVLL 238 (314)
T ss_pred -----cCCChhhhhhhhHHHhhhcCceEEeccHHHH----------------HHHHHHHHHHhCCCceEEEEEeeh
Confidence 78889999999999999887 5444433221 123445688999999988887754
No 189
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.62 E-value=8.7e-08 Score=84.03 Aligned_cols=141 Identities=18% Similarity=0.194 Sum_probs=89.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC-------------------------------CC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-------------------------------KE 161 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-------------------------------~~ 161 (340)
++.++||||||+-.+-..-+..+ ..+++..|.++..++..++.... ..
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 57899999999966633323221 35799999999888766543110 01
Q ss_pred c-EEEEcCCCCCC-CCC-----CCccEEEecCccccc-CCHH---HHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhH
Q 019479 162 C-TIIEGDAEDLP-FPT-----DYADRYVSAGSIEYW-PDPQ---RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADV 230 (340)
Q Consensus 162 i-~~~~~d~~~~~-~~~-----~~fD~v~~~~~l~~~-~d~~---~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 230 (340)
| .++.+|+.+.+ +.. .+||+|++..+++.. .|.+ .+++++.++|||||.|++............- ..+
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~-~~F 213 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGG-HKF 213 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETT-EEE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECC-Eec
Confidence 2 36778886533 322 249999999999876 3443 7899999999999999998654432211000 001
Q ss_pred hhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 231 WMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 231 ~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
.....+.+.+.+.++++||.+++.+
T Consensus 214 ~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 214 PCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp E---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ccccCCHHHHHHHHHHcCCEEEecc
Confidence 1123488999999999999988887
No 190
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.61 E-value=5.3e-07 Score=76.28 Aligned_cols=118 Identities=11% Similarity=0.021 Sum_probs=78.6
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---C-CCcEEEEcCCCCC
Q 019479 97 TEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---L-KECTIIEGDAEDL 172 (340)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~-~~i~~~~~d~~~~ 172 (340)
...+++.+.......-.+.+|||++||+|.++..++.+. ...|+++|.++.+++.++++.. . .+++++++|+.+.
T Consensus 33 ~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~ 111 (189)
T TIGR00095 33 TRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA 111 (189)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH
Confidence 334444444433222257899999999999999999982 3589999999999999987632 2 3688999999442
Q ss_pred -C-C-CC-CCccEEEecCcccccCCHHHHHHHHHH--hcccCcEEEEEcc
Q 019479 173 -P-F-PT-DYADRYVSAGSIEYWPDPQRGIKEAYR--VLKIGGKACVIGP 216 (340)
Q Consensus 173 -~-~-~~-~~fD~v~~~~~l~~~~d~~~~l~~~~~--~LkpgG~l~i~~~ 216 (340)
. . .. ..||+|+..--+.. .....++..+.+ .|+++|.+++...
T Consensus 112 l~~~~~~~~~~dvv~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 112 LKFLAKKPTFDNVIYLDPPFFN-GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred HHHhhccCCCceEEEECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 1 1 12 24788887544432 233455555544 6888888776643
No 191
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.59 E-value=2.8e-07 Score=85.60 Aligned_cols=104 Identities=20% Similarity=0.095 Sum_probs=80.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCC-----CCcEEEEcCCCCCC----CCCCCccEE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPL-----KECTIIEGDAEDLP----FPTDYADRY 182 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~-----~~i~~~~~d~~~~~----~~~~~fD~v 182 (340)
.|++|||+-|=||.++...+.. |+ +|+.||.|...+++|+++... ..+.++++|+.++- -...+||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 4899999999999999998886 65 999999999999999988432 34789999996632 234589999
Q ss_pred EecCcc-c--------ccCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 183 VSAGSI-E--------YWPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 183 ~~~~~l-~--------~~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
++.--- . -..|...++..+.++|+|||.+++.....
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 983111 0 01233478899999999999998886543
No 192
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.59 E-value=1.9e-07 Score=81.94 Aligned_cols=101 Identities=14% Similarity=0.095 Sum_probs=79.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCC-CC-C-----CCCCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAED-LP-F-----PTDYAD 180 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~-~~-~-----~~~~fD 180 (340)
+.++|||||+++|..+..++...| +++++.+|.+++..+.|++.+. .++|+++.+|+.+ ++ + ..++||
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 678999999999999999998764 6899999999999999987632 3679999999855 22 1 136899
Q ss_pred EEEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 181 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+|+.-.- -......++.+.+.|+|||.+++-+.
T Consensus 159 ~iFiDad---K~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 159 FIFVDAD---KDNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred EEEecCC---HHHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 9998532 12234778889999999999876543
No 193
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.59 E-value=7.2e-07 Score=79.93 Aligned_cols=127 Identities=17% Similarity=0.139 Sum_probs=84.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhCCC-CCcEE--EEcCCCCCCCCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPL-KECTI--IEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~-~~i~~--~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
.+.+|||+|||+|..+..+.+.++. .+++++|.|+.|++.++..... .+... ...++.....+..+.|+|++.++|
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L 112 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVL 112 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhh
Confidence 5779999999999888777777663 5899999999999998876321 11110 011111101112234999999999
Q ss_pred cccCCHH--HHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEE
Q 019479 189 EYWPDPQ--RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 189 ~~~~d~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 253 (340)
..+++.. .+++.+.+.+.+ .|+++++..+... ....+.++.|.+.|+.++-
T Consensus 113 ~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf------------~~i~~aR~~l~~~~~~v~A 165 (274)
T PF09243_consen 113 NELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGF------------RRIAEARDQLLEKGAHVVA 165 (274)
T ss_pred hcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHH------------HHHHHHHHHHhhCCCceEC
Confidence 9998732 566666666654 9999998766431 2345566677777776543
No 194
>PRK04148 hypothetical protein; Provisional
Probab=98.58 E-value=7.5e-07 Score=70.04 Aligned_cols=92 Identities=18% Similarity=0.131 Sum_probs=65.6
Q ss_pred CCCEEEEEcCccch-HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCC-CCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTGF-TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFP-TDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~-~~~fD~v~~~~~l~~ 190 (340)
++.+|||||||+|. .+..+++. +.+|+++|+++..++.++++ .+.++.+|+.+..+. -..+|+|++...
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~----~~~~v~dDlf~p~~~~y~~a~liysirp--- 86 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL----GLNAFVDDLFNPNLEIYKNAKLIYSIRP--- 86 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh----CCeEEECcCCCCCHHHHhcCCEEEEeCC---
Confidence 56899999999996 88888876 88999999999999999864 468999999874432 345899997432
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
-++.+..+.++.+.+ |.-++|..
T Consensus 87 p~el~~~~~~la~~~--~~~~~i~~ 109 (134)
T PRK04148 87 PRDLQPFILELAKKI--NVPLIIKP 109 (134)
T ss_pred CHHHHHHHHHHHHHc--CCCEEEEc
Confidence 223334444444433 45566654
No 195
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.57 E-value=4.1e-07 Score=86.64 Aligned_cols=98 Identities=22% Similarity=0.290 Sum_probs=69.1
Q ss_pred CCEEEEEcCccchHHHHHHHhC----CCceEEEEeCCHHHHHHHHHh---CC-CCCcEEEEcCCCCCCCCCCCccEEEec
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHV----DAKNVTILDQSPHQLAKAKQK---EP-LKECTIIEGDAEDLPFPTDYADRYVSA 185 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~----~~~~v~g~D~s~~~~~~a~~~---~~-~~~i~~~~~d~~~~~~~~~~fD~v~~~ 185 (340)
+..|+|||||+|.++...++.. ...+|+++|-++.++...+++ .. .++|+++.+|++++..+. ++|+|++-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEe
Confidence 6789999999999988776652 236999999999877665433 22 267999999999987544 79999975
Q ss_pred Cccccc--CCHHHHHHHHHHhcccCcEEE
Q 019479 186 GSIEYW--PDPQRGIKEAYRVLKIGGKAC 212 (340)
Q Consensus 186 ~~l~~~--~d~~~~l~~~~~~LkpgG~l~ 212 (340)
..-... +-..+.|....|.|||||.++
T Consensus 266 lLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 443222 222478889999999999874
No 196
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.55 E-value=3e-08 Score=82.05 Aligned_cols=138 Identities=16% Similarity=0.210 Sum_probs=94.2
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
..+.++||+|+|.|..+..++..+ .+|++.++|..|..+.+++ +.+++ ...++...+-+||+|.|.+.+...
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk----~ynVl--~~~ew~~t~~k~dli~clNlLDRc 182 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKK----NYNVL--TEIEWLQTDVKLDLILCLNLLDRC 182 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhc----CCcee--eehhhhhcCceeehHHHHHHHHhh
Confidence 457899999999999999988774 5799999999999998864 21221 122222245579999999999988
Q ss_pred CCHHHHHHHHHHhccc-CcEEEEEc---------cCCCchhHh--hHhhhHhhcC-CCHHHHHHHHHHCCCcEEEEEEe
Q 019479 192 PDPQRGIKEAYRVLKI-GGKACVIG---------PVYPTFWLS--RFFADVWMLF-PKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 192 ~d~~~~l~~~~~~Lkp-gG~l~i~~---------~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
.++-+.|+.++.+|+| +|++++.- .+....+.. .++......+ .....+.++|+++||.+......
T Consensus 183 ~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrl 261 (288)
T KOG3987|consen 183 FDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRL 261 (288)
T ss_pred cChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhcC
Confidence 8999999999999999 79887641 111111111 1111111111 12345678899999997655544
No 197
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.54 E-value=1.5e-06 Score=74.09 Aligned_cols=131 Identities=20% Similarity=0.201 Sum_probs=97.6
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHH---HHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQ---LAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~---~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
+.+++|||+|.|.-+..++-.+|..+|+.+|....- ++.+.+....+|++++++.+++.......||+|+++.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv--- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV--- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc---
Confidence 689999999999999999988899999999998754 45555567778999999999987532122999998754
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCCccc
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGPKWY 262 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~ 262 (340)
.+......-+...+|+||.++..-.... .--..+.+......|+.++.+........
T Consensus 145 -a~L~~l~e~~~pllk~~g~~~~~k~~~~--------------~~e~~e~~~a~~~~~~~~~~~~~~~~p~~ 201 (215)
T COG0357 145 -ASLNVLLELCLPLLKVGGGFLAYKGLAG--------------KDELPEAEKAILPLGGQVEKVFSLTVPEL 201 (215)
T ss_pred -cchHHHHHHHHHhcccCCcchhhhHHhh--------------hhhHHHHHHHHHhhcCcEEEEEEeecCCC
Confidence 3556677888899999998754321100 00235666778888999999888865443
No 198
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.54 E-value=4.5e-07 Score=84.82 Aligned_cols=97 Identities=22% Similarity=0.261 Sum_probs=77.2
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---CCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
+.+|||++||+|..++.++...+..+|+++|+++.+++.++++.. ..++++.++|+..+....+.||+|++.- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 468999999999999999887655689999999999999998743 3456688999865321145699999853 2
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEE
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
..+..++..+.+.+++||.++++
T Consensus 135 -Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -CCcHHHHHHHHHHhcCCCEEEEE
Confidence 34467888878889999999998
No 199
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.54 E-value=1.4e-07 Score=82.43 Aligned_cols=96 Identities=27% Similarity=0.239 Sum_probs=81.3
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCc-EEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC-TIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i-~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.+..++|+|||.|.... ..|...++|.|++...+..+++. +. ....+|+..+|+.+.+||.+++..++||+
T Consensus 45 ~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~----~~~~~~~ad~l~~p~~~~s~d~~lsiavihhl 116 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRS----GGDNVCRADALKLPFREESFDAALSIAVIHHL 116 (293)
T ss_pred CcceeeecccCCcccCc----CCCcceeeecchhhhhccccccC----CCceeehhhhhcCCCCCCccccchhhhhhhhh
Confidence 58899999999998743 33778899999999999888753 33 57789999999999999999999999999
Q ss_pred CCHH---HHHHHHHHhcccCcEEEEEcc
Q 019479 192 PDPQ---RGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 192 ~d~~---~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.... .+++++.|.|+|||..++...
T Consensus 117 sT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 117 STRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred hhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 6553 799999999999999877643
No 200
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.54 E-value=3.2e-07 Score=77.80 Aligned_cols=96 Identities=26% Similarity=0.271 Sum_probs=69.1
Q ss_pred CCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCCCCccEEEecC
Q 019479 111 FDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPTDYADRYVSAG 186 (340)
Q Consensus 111 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~~~fD~v~~~~ 186 (340)
..++.+|+|.-||.|.+++.+++...+..|+++|++|.+++..+++.. ..++..+.+|..++.. ...||-|+++.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC
Confidence 357899999999999999999996557899999999999998887622 2458889999987654 77899999864
Q ss_pred cccccCCHHHHHHHHHHhcccCcEE
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKA 211 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l 211 (340)
.-. ...+|..+.+++++||.+
T Consensus 178 p~~----~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 178 PES----SLEFLDAALSLLKEGGII 198 (200)
T ss_dssp TSS----GGGGHHHHHHHEEEEEEE
T ss_pred hHH----HHHHHHHHHHHhcCCcEE
Confidence 322 235788899999999886
No 201
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.54 E-value=8.6e-07 Score=79.65 Aligned_cols=132 Identities=20% Similarity=0.193 Sum_probs=97.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHh----------CCCCCcEEEEcCCCCC-CCCCCCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQK----------EPLKECTIIEGDAEDL-PFPTDYA 179 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~----------~~~~~i~~~~~d~~~~-~~~~~~f 179 (340)
+...+||-+|.|.|..++++.+. | ..+++-+|++|.|++.+++. ..+++++++..|+.++ .-..+.|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 46789999999999999998876 6 47999999999999999843 2347799999999764 2344579
Q ss_pred cEEEecCcccccCCHH----------HHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCC
Q 019479 180 DRYVSAGSIEYWPDPQ----------RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGF 249 (340)
Q Consensus 180 D~v~~~~~l~~~~d~~----------~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF 249 (340)
|.||. +++||. ++..-+.+.|+++|.++++....-. ..+ .--.+..-+++|||
T Consensus 367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~--tp~----------vfw~i~aTik~AG~ 429 (508)
T COG4262 367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYF--TPR----------VFWRIDATIKSAGY 429 (508)
T ss_pred cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCcc--CCc----------eeeeehhHHHhCcc
Confidence 99997 455553 6788899999999999887543210 000 01134567899999
Q ss_pred cEEEEEEeCCcc
Q 019479 250 KDVKLKRIGPKW 261 (340)
Q Consensus 250 ~~v~~~~~~~~~ 261 (340)
.+.-.+..-+.+
T Consensus 430 ~~~Pyhv~VPTF 441 (508)
T COG4262 430 RVWPYHVHVPTF 441 (508)
T ss_pred eeeeeEEecCcc
Confidence 987666655544
No 202
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.54 E-value=2e-07 Score=82.20 Aligned_cols=103 Identities=21% Similarity=0.232 Sum_probs=77.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-------CCCCcEEEEcCCCCC-CCCCC-CccEEE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECTIIEGDAEDL-PFPTD-YADRYV 183 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-------~~~~i~~~~~d~~~~-~~~~~-~fD~v~ 183 (340)
.+++||-||.|.|..+..+++..+..+++++|+++.+++.+++.. .+++++++.+|.... .-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 689999999999999999988755679999999999999999763 247899999998542 22233 899999
Q ss_pred ecCcccccCC----HHHHHHHHHHhcccCcEEEEEc
Q 019479 184 SAGSIEYWPD----PQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 184 ~~~~l~~~~d----~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
....-...+. ...+++.+.+.|+|||.+++..
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 8433211111 1489999999999999998875
No 203
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.51 E-value=5.1e-07 Score=79.08 Aligned_cols=138 Identities=17% Similarity=0.216 Sum_probs=82.9
Q ss_pred CCEEEEEcCc--cchHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhCC-CCC--cEEEEcCCCCCC--CC----CCCcc-
Q 019479 114 NMRVVDVGGG--TGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEP-LKE--CTIIEGDAEDLP--FP----TDYAD- 180 (340)
Q Consensus 114 ~~~vLDiGcG--~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~-~~~--i~~~~~d~~~~~--~~----~~~fD- 180 (340)
-...|||||| |-.+..++++. .|.++|+-+|.+|..+..++..+. .++ ..++.+|+.+.. +. .+-+|
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 4689999999 33455556554 588999999999999999998743 345 789999997621 00 11233
Q ss_pred ----EEEecCcccccCC---HHHHHHHHHHhcccCcEEEEEccCCCchh-HhhHhhhHh------hcCCCHHHHHHHHHH
Q 019479 181 ----RYVSAGSIEYWPD---PQRGIKEAYRVLKIGGKACVIGPVYPTFW-LSRFFADVW------MLFPKEEEYIEWFQK 246 (340)
Q Consensus 181 ----~v~~~~~l~~~~d---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~l~~ 246 (340)
.+++..++|+++| +..+++.+++.|.||.+|.++........ ........+ ...++.+++..+|.
T Consensus 149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~- 227 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSREEIAAFFD- 227 (267)
T ss_dssp TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-HHHHHHCCT-
T ss_pred CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCHHHHHHHcC-
Confidence 6888999999965 56899999999999999999876544221 112222222 22678999999987
Q ss_pred CCCcEEE
Q 019479 247 AGFKDVK 253 (340)
Q Consensus 247 aGF~~v~ 253 (340)
||+.++
T Consensus 228 -g~elve 233 (267)
T PF04672_consen 228 -GLELVE 233 (267)
T ss_dssp -TSEE-T
T ss_pred -CCccCC
Confidence 888765
No 204
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.48 E-value=1.6e-06 Score=80.83 Aligned_cols=120 Identities=13% Similarity=0.055 Sum_probs=80.4
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCC-C-CC-------------
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDL-P-FP------------- 175 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~-~-~~------------- 175 (340)
+.+|||++||+|.++..+++. ..+|+|+|.++.+++.++++. ...|++++.+|+.+. + +.
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 357999999999999998887 468999999999999999873 335789999998652 1 10
Q ss_pred -CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEE
Q 019479 176 -TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 176 -~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
..+||+|++.---. .-...+++.+.+ |++.+++.... .. -..++..+. + ||++.++
T Consensus 285 ~~~~~D~v~lDPPR~--G~~~~~l~~l~~---~~~ivyvSC~p-~t---------------larDl~~L~-~-gY~l~~v 341 (362)
T PRK05031 285 KSYNFSTIFVDPPRA--GLDDETLKLVQA---YERILYISCNP-ET---------------LCENLETLS-Q-THKVERF 341 (362)
T ss_pred cCCCCCEEEECCCCC--CCcHHHHHHHHc---cCCEEEEEeCH-HH---------------HHHHHHHHc-C-CcEEEEE
Confidence 12589999843211 111244455543 67777766421 10 023444443 3 9998888
Q ss_pred EEeC
Q 019479 255 KRIG 258 (340)
Q Consensus 255 ~~~~ 258 (340)
..+.
T Consensus 342 ~~~D 345 (362)
T PRK05031 342 ALFD 345 (362)
T ss_pred EEcc
Confidence 7765
No 205
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.48 E-value=2.7e-07 Score=85.16 Aligned_cols=143 Identities=22% Similarity=0.235 Sum_probs=105.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC----CCCCcEEEEcCCCCCCCCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECTIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~----~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
++..++|+|||.|.....++.. ....++|+|.++..+..+.... ......++.+|+.+.|++++.||.+.+..+.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred ccccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 5668999999999999988775 5789999999999888887542 1234556889999999999999999999999
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEccCCCch------hHhh-----HhhhHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTF------WLSR-----FFADVWMLFPKEEEYIEWFQKAGFKDVKLKR 256 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~------~~~~-----~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 256 (340)
.|.++...+++|++|++||||..+..+...... .... ...+.........++-+.+...||..+..++
T Consensus 189 ~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~~~~~~~ 267 (364)
T KOG1269|consen 189 CHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFGFEHLKLEK 267 (364)
T ss_pred ccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhccchhhhhcc
Confidence 999999999999999999999998865432210 0000 0011111122344566777888888776433
No 206
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.44 E-value=5.5e-07 Score=80.87 Aligned_cols=95 Identities=18% Similarity=0.262 Sum_probs=71.4
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHhCCC-CCcEEEEcCCCCCC--CC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL-KECTIIEGDAEDLP--FP 175 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~-~~i~~~~~d~~~~~--~~ 175 (340)
+..++++.+.. .++..+||.+||.|..+..+++.++ ..+|+|+|.++.+++.++++... .+++++++|+.++. ..
T Consensus 7 ll~Evl~~L~~-~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 7 LLDEVVDALAI-KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred cHHHHHHhhCC-CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence 34455555543 3678999999999999999999985 58999999999999999987543 57999999997643 12
Q ss_pred C--CCccEEEecCccc--ccCCHH
Q 019479 176 T--DYADRYVSAGSIE--YWPDPQ 195 (340)
Q Consensus 176 ~--~~fD~v~~~~~l~--~~~d~~ 195 (340)
. .++|.|++...+. ++++++
T Consensus 86 ~~~~~vDgIl~DLGvSs~Qld~~~ 109 (296)
T PRK00050 86 EGLGKVDGILLDLGVSSPQLDDAE 109 (296)
T ss_pred cCCCccCEEEECCCccccccCCCc
Confidence 2 2799999864443 344443
No 207
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=1.4e-07 Score=75.15 Aligned_cols=133 Identities=15% Similarity=0.222 Sum_probs=98.3
Q ss_pred CCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC------CCcEEEEcCCCC--CCCCCCCccEEE
Q 019479 113 RNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECTIIEGDAED--LPFPTDYADRYV 183 (340)
Q Consensus 113 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~------~~i~~~~~d~~~--~~~~~~~fD~v~ 183 (340)
.+.+|||+|.| +|..+..++...|...|...|-+++.++..++.... ..+..+..+... ......+||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 57899999999 566667777777889999999999999888765221 122222222211 113456899999
Q ss_pred ecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCCc
Q 019479 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 260 (340)
+..++..-.-....++.|.+.|+|.|+-++..|-..+ +.+.+.+.....||.+.-.+.+...
T Consensus 109 aADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~---------------sL~kF~de~~~~gf~v~l~enyde~ 170 (201)
T KOG3201|consen 109 AADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQ---------------SLQKFLDEVGTVGFTVCLEENYDEA 170 (201)
T ss_pred eccchhHHHHHHHHHHHHHHHhCcccceeEecCcccc---------------hHHHHHHHHHhceeEEEecccHhHH
Confidence 9999876555568899999999999998887765433 6778888999999998877777654
No 208
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.43 E-value=5.2e-07 Score=80.64 Aligned_cols=104 Identities=22% Similarity=0.203 Sum_probs=73.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-----CCCCcEEEEcCCCCCC---CCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-----PLKECTIIEGDAEDLP---FPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-----~~~~i~~~~~d~~~~~---~~~~~fD~v~~ 184 (340)
.+++|||+=|=||.++...+.. +..+|+.+|.|..++++++++. ...++++++.|+.+.. -..++||+||+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 5789999999999999987765 2358999999999999999872 2356889999996521 12468999998
Q ss_pred cCcc------cccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 185 AGSI------EYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 185 ~~~l------~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
.--- .-..+...+++.+.++|+|||.|++....
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 3111 11123347888999999999998776543
No 209
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.41 E-value=5.4e-06 Score=77.08 Aligned_cols=119 Identities=9% Similarity=0.012 Sum_probs=78.4
Q ss_pred CEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCC-----------C-----
Q 019479 115 MRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPF-----------P----- 175 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~-----------~----- 175 (340)
.+|||++||+|.++..+++.. .+|+|+|.++.+++.|+++. ...|++++.+|+.++-. .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 479999999999999998874 58999999999999999874 23478999999865211 0
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
...||+|++.--= ..-...+++.+. +|++.+++..... . -..++..+. .||++.++.
T Consensus 277 ~~~~d~v~lDPPR--~G~~~~~l~~l~---~~~~ivYvsC~p~-t---------------laRDl~~L~--~~Y~l~~v~ 333 (353)
T TIGR02143 277 SYNCSTIFVDPPR--AGLDPDTCKLVQ---AYERILYISCNPE-T---------------LKANLEQLS--ETHRVERFA 333 (353)
T ss_pred cCCCCEEEECCCC--CCCcHHHHHHHH---cCCcEEEEEcCHH-H---------------HHHHHHHHh--cCcEEEEEE
Confidence 1137999873221 111124445544 4777777764211 0 023444333 348888777
Q ss_pred EeC
Q 019479 256 RIG 258 (340)
Q Consensus 256 ~~~ 258 (340)
.+.
T Consensus 334 ~~D 336 (353)
T TIGR02143 334 LFD 336 (353)
T ss_pred Ecc
Confidence 764
No 210
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=2e-06 Score=75.32 Aligned_cols=88 Identities=24% Similarity=0.352 Sum_probs=72.8
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-CCCCcEEEEcCCCCCCCCC
Q 019479 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-PLKECTIIEGDAEDLPFPT 176 (340)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-~~~~i~~~~~d~~~~~~~~ 176 (340)
..+.+.+...+... ++..|||||+|.|.++..++++ +.+|+++++++.+++..+++. ...|++++.+|+...+++.
T Consensus 16 ~~v~~kIv~~a~~~-~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 16 KNVIDKIVEAANIS-PGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHHHHhcCCC-CCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchh
Confidence 34567777777764 4899999999999999999998 788999999999999999886 4688999999998877654
Q ss_pred C-CccEEEecCcc
Q 019479 177 D-YADRYVSAGSI 188 (340)
Q Consensus 177 ~-~fD~v~~~~~l 188 (340)
- .++.|+++--.
T Consensus 93 l~~~~~vVaNlPY 105 (259)
T COG0030 93 LAQPYKVVANLPY 105 (259)
T ss_pred hcCCCEEEEcCCC
Confidence 3 57888876544
No 211
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.39 E-value=5.1e-06 Score=79.63 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=80.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCC-CCCCCccEEEe--
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLP-FPTDYADRYVS-- 184 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~-~~~~~fD~v~~-- 184 (340)
.++.+|||+++|.|.-+..++....+ ..+++.|+++.-++..+++ .+..|+.+...|...+. ...+.||.|++
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 47899999999999999999998744 6999999999988888765 44567888888886543 22456999995
Q ss_pred --cCcccccCCH------------------HHHHHHHHHhcccCcEEEEEccCC
Q 019479 185 --AGSIEYWPDP------------------QRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 185 --~~~l~~~~d~------------------~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
+..-..-.++ .++|..+.+.|||||+|+-++...
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 3211111122 278899999999999998776554
No 212
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.39 E-value=6e-06 Score=66.78 Aligned_cols=101 Identities=27% Similarity=0.312 Sum_probs=74.0
Q ss_pred EEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhCCCCC---cEEEEcCCCC--CCCCC-CCccEEEecCccc
Q 019479 117 VVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPLKE---CTIIEGDAED--LPFPT-DYADRYVSAGSIE 189 (340)
Q Consensus 117 vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~---i~~~~~d~~~--~~~~~-~~fD~v~~~~~l~ 189 (340)
++|+|||+|... .+....+. ..++++|.++.++..++....... +.+...|... .++.. ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999976 33443222 489999999999998665432111 5788888765 67666 489999 544444
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEccCCC
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIGPVYP 219 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~ 219 (340)
+..+....+.++.+.++|+|.+++......
T Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 130 HLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred hcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 443478899999999999999988866544
No 213
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.37 E-value=4.6e-07 Score=76.07 Aligned_cols=123 Identities=17% Similarity=0.123 Sum_probs=83.6
Q ss_pred CCchHHHHHHhccccCCC-CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---C-CCcEEEEcC
Q 019479 94 GHWTEDMRDEALEPADLF-DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---L-KECTIIEGD 168 (340)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~-~~i~~~~~d 168 (340)
++....+++.+...+... -.+.+|||+-||+|.++.+.+.+ +..+|+.+|.++..+...+++.. . .++.++..|
T Consensus 22 RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d 100 (183)
T PF03602_consen 22 RPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGD 100 (183)
T ss_dssp -SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESS
T ss_pred CCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccC
Confidence 345556666666665543 37899999999999999999988 34799999999999999998732 2 347888888
Q ss_pred CCC-CC---CCCCCccEEEecCcccccCCHHHHHHHHH--HhcccCcEEEEEccC
Q 019479 169 AED-LP---FPTDYADRYVSAGSIEYWPDPQRGIKEAY--RVLKIGGKACVIGPV 217 (340)
Q Consensus 169 ~~~-~~---~~~~~fD~v~~~~~l~~~~d~~~~l~~~~--~~LkpgG~l~i~~~~ 217 (340)
+.. +. ....+||+|++.--...-.....++..+. ..|+++|.+++....
T Consensus 101 ~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 101 AFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp HHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred HHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 643 21 14678999998654443211356777776 789999998887644
No 214
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.32 E-value=7.7e-07 Score=74.84 Aligned_cols=97 Identities=22% Similarity=0.258 Sum_probs=61.6
Q ss_pred CCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC------C--C--CCCCccE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL------P--F--PTDYADR 181 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~------~--~--~~~~fD~ 181 (340)
.+.+|||+||++|.|+..++++. +..+|+|+|+.+.. ..+++.++++|+.+. . + ..+++|+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~--------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dl 94 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD--------PLQNVSFIQGDITNPENIKDIRKLLPESGEKFDL 94 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG--------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc--------cccceeeeecccchhhHHHhhhhhccccccCcce
Confidence 45899999999999999999985 35899999997651 114455555555321 0 1 1268999
Q ss_pred EEecCcccccCC----HH-------HHHHHHHHhcccCcEEEEEccC
Q 019479 182 YVSAGSIEYWPD----PQ-------RGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 182 v~~~~~l~~~~d----~~-------~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
|++..+.....+ .. ..+.-+.+.|+|||.+++-...
T Consensus 95 v~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 95 VLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp EEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred eccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 998764333222 21 4455666789999988876543
No 215
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.30 E-value=9.4e-06 Score=73.91 Aligned_cols=104 Identities=14% Similarity=0.140 Sum_probs=77.0
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC----CCceEEEEeCCHHHHHHHHHhCC---CCCcEE--EEcCCCC----CCC--CC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV----DAKNVTILDQSPHQLAKAKQKEP---LKECTI--IEGDAED----LPF--PT 176 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~----~~~~v~g~D~s~~~~~~a~~~~~---~~~i~~--~~~d~~~----~~~--~~ 176 (340)
.++..|+|+|||+|.-+..+++.+ ...+++++|+|.++++.+.+++. .+.+++ +++|+.+ ++- ..
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 467799999999999877776655 24689999999999999988754 245555 7888855 221 11
Q ss_pred CCccEEE-ecCcccccCCHH--HHHHHHHH-hcccCcEEEEEc
Q 019479 177 DYADRYV-SAGSIEYWPDPQ--RGIKEAYR-VLKIGGKACVIG 215 (340)
Q Consensus 177 ~~fD~v~-~~~~l~~~~d~~--~~l~~~~~-~LkpgG~l~i~~ 215 (340)
....+++ ...++.+++..+ .+|+++++ .|+|||.+++--
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 2345554 456888886654 78999999 999999988853
No 216
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=1.3e-06 Score=68.41 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=62.4
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--CCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
.|++++|+|||.|.++..+.- +....|+|+|+++++++.+.+++.. -++++.++|+.++-+..+.||.++.+--+..
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFGT 126 (185)
T ss_pred cCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCCc
Confidence 789999999999999855443 3457899999999999999987432 3578899999887767788999998776653
No 217
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.25 E-value=7.3e-06 Score=71.09 Aligned_cols=84 Identities=25% Similarity=0.317 Sum_probs=68.6
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC----CCcEEEEcCCCCCCC
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECTIIEGDAEDLPF 174 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~----~~i~~~~~d~~~~~~ 174 (340)
.+.+.+...++. +++..|||||.|||.++..+++. +.+|+++++++.|+....++... ...+++.+|+...++
T Consensus 45 ~v~~~I~~ka~~-k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~ 121 (315)
T KOG0820|consen 45 LVIDQIVEKADL-KPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL 121 (315)
T ss_pred HHHHHHHhccCC-CCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC
Confidence 455666666666 58899999999999999999998 89999999999999999988432 458899999976543
Q ss_pred CCCCccEEEecCc
Q 019479 175 PTDYADRYVSAGS 187 (340)
Q Consensus 175 ~~~~fD~v~~~~~ 187 (340)
..||.++++.-
T Consensus 122 --P~fd~cVsNlP 132 (315)
T KOG0820|consen 122 --PRFDGCVSNLP 132 (315)
T ss_pred --cccceeeccCC
Confidence 45899998543
No 218
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.23 E-value=9.3e-05 Score=62.94 Aligned_cols=146 Identities=19% Similarity=0.199 Sum_probs=94.0
Q ss_pred HHHHHhccccC--CCCCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCH----HHHHHHHHhCCCCCcEEEEcCCCC
Q 019479 99 DMRDEALEPAD--LFDRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSP----HQLAKAKQKEPLKECTIIEGDAED 171 (340)
Q Consensus 99 ~~~~~~l~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~----~~~~~a~~~~~~~~i~~~~~d~~~ 171 (340)
.+...++.... ...++.+||-+|..+|.....+++-.+ .+.|++++.|+ +.++.|++| +|+-.+..|+..
T Consensus 57 KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~ 133 (229)
T PF01269_consen 57 KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARH 133 (229)
T ss_dssp HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTS
T ss_pred HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCC
Confidence 34444444332 235899999999999999999999865 68999999999 556677765 788889999965
Q ss_pred CC---CCCCCccEEEecCcccccCCH-HHHHHHHHHhcccCcEEEEEccCCC--c-hhHhhHhhhHhhcCCCHHHHHHHH
Q 019479 172 LP---FPTDYADRYVSAGSIEYWPDP-QRGIKEAYRVLKIGGKACVIGPVYP--T-FWLSRFFADVWMLFPKEEEYIEWF 244 (340)
Q Consensus 172 ~~---~~~~~fD~v~~~~~l~~~~d~-~~~l~~~~~~LkpgG~l~i~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~l 244 (340)
.. .--+.+|+|++.-. -+|. +-++.++...||+||.+++.-.... . ...... -.+-.+.|
T Consensus 134 P~~Y~~lv~~VDvI~~DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~v----------f~~e~~~L 200 (229)
T PF01269_consen 134 PEKYRMLVEMVDVIFQDVA---QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEV----------FAEEVKKL 200 (229)
T ss_dssp GGGGTTTS--EEEEEEE-S---STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHH----------HHHHHHHH
T ss_pred hHHhhcccccccEEEecCC---ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHH----------HHHHHHHH
Confidence 21 22357999997432 1244 3567788889999999988732100 0 000000 12334577
Q ss_pred HHCCCcEEEEEEeCCc
Q 019479 245 QKAGFKDVKLKRIGPK 260 (340)
Q Consensus 245 ~~aGF~~v~~~~~~~~ 260 (340)
++.||++++...+.+.
T Consensus 201 ~~~~~~~~e~i~LePy 216 (229)
T PF01269_consen 201 KEEGFKPLEQITLEPY 216 (229)
T ss_dssp HCTTCEEEEEEE-TTT
T ss_pred HHcCCChheEeccCCC
Confidence 8899999999888653
No 219
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.22 E-value=6.6e-06 Score=68.86 Aligned_cols=118 Identities=21% Similarity=0.282 Sum_probs=91.0
Q ss_pred CchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--CCCCcEEEEcCCCCC
Q 019479 95 HWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--PLKECTIIEGDAEDL 172 (340)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~--~~~~i~~~~~d~~~~ 172 (340)
.|...+.+...+.+. .++.+||+||-|-|.....+.++ |..+=+.++..|...+..+... ...|+.+..+-.++.
T Consensus 85 ~WEtpiMha~A~ai~--tkggrvLnVGFGMgIidT~iQe~-~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDv 161 (271)
T KOG1709|consen 85 RWETPIMHALAEAIS--TKGGRVLNVGFGMGIIDTFIQEA-PPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDV 161 (271)
T ss_pred hhhhHHHHHHHHHHh--hCCceEEEeccchHHHHHHHhhc-CCcceEEEecCHHHHHHHHhcccccccceEEEecchHhh
Confidence 455555555444443 47899999999999999888777 4566778999999999998762 346788888877663
Q ss_pred --CCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 173 --PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 173 --~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.++++.||.|+-..--.+-.|...+.+.+.|+|||+|++-..+
T Consensus 162 l~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 162 LNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 3678889999976655777788889999999999999986654
No 220
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=98.22 E-value=6e-06 Score=68.47 Aligned_cols=104 Identities=15% Similarity=0.226 Sum_probs=75.1
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----------CCCcEEEEcCCCCCCCCCCCccEE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----------LKECTIIEGDAEDLPFPTDYADRY 182 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----------~~~i~~~~~d~~~~~~~~~~fD~v 182 (340)
....+.|||||-|.+...++..+|..-+.|+++--...+..++++. .+|+.+...+.... ..+-|.--
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~--lpn~f~kg 137 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF--LPNFFEKG 137 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh--ccchhhhc
Confidence 4467999999999999999999999999999998888888876621 34566666665431 22223333
Q ss_pred EecCcccccCCHH-------------HHHHHHHHhcccCcEEEEEccCC
Q 019479 183 VSAGSIEYWPDPQ-------------RGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 183 ~~~~~l~~~~d~~-------------~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
.+.-.++.++|++ ..+.+..-+|++||.++.+..+.
T Consensus 138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence 3444444555654 57888899999999999876543
No 221
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.22 E-value=2e-05 Score=79.89 Aligned_cols=130 Identities=15% Similarity=0.090 Sum_probs=90.1
Q ss_pred hhcccCCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhC----C--------------------------
Q 019479 87 YDHVINPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHV----D-------------------------- 136 (340)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~----~-------------------------- 136 (340)
|.....+.+..+.+...++.......++..++|.+||+|.++++.+... |
T Consensus 164 yr~~~~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~ 243 (702)
T PRK11783 164 YRQATGEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEE 243 (702)
T ss_pred CccCCCCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHH
Confidence 3333344566777888888777664567899999999999998876531 1
Q ss_pred ------------CceEEEEeCCHHHHHHHHHhCCC----CCcEEEEcCCCCCCCC--CCCccEEEecCccccc-C---CH
Q 019479 137 ------------AKNVTILDQSPHQLAKAKQKEPL----KECTIIEGDAEDLPFP--TDYADRYVSAGSIEYW-P---DP 194 (340)
Q Consensus 137 ------------~~~v~g~D~s~~~~~~a~~~~~~----~~i~~~~~d~~~~~~~--~~~fD~v~~~~~l~~~-~---d~ 194 (340)
..+++|+|+++.+++.|+++... ..+.+.++|+.+++.+ .++||+|+++--...- . +.
T Consensus 244 a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l 323 (702)
T PRK11783 244 AQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPAL 323 (702)
T ss_pred HHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHH
Confidence 13699999999999999988432 3478999999876543 3579999998554322 2 22
Q ss_pred HHHHHHHHHhcc---cCcEEEEEcc
Q 019479 195 QRGIKEAYRVLK---IGGKACVIGP 216 (340)
Q Consensus 195 ~~~l~~~~~~Lk---pgG~l~i~~~ 216 (340)
..+++.+.+.+| +|+.+++...
T Consensus 324 ~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 324 IALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 344444444444 8888877643
No 222
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.22 E-value=1.4e-05 Score=67.84 Aligned_cols=100 Identities=18% Similarity=0.169 Sum_probs=79.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhC----CCCCcEEEEcCCCC-CC-----CCCCCccE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKE----PLKECTIIEGDAED-LP-----FPTDYADR 181 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~----~~~~i~~~~~d~~~-~~-----~~~~~fD~ 181 (340)
.++++||||.=||..+..+|...|. ++|+++|+++...+++.+.. ....+++++++..+ ++ ...++||+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 6789999999999999999999875 89999999999999987652 23568999998854 21 34678999
Q ss_pred EEecCcccccC-CHHHHHHHHHHhcccCcEEEEEcc
Q 019479 182 YVSAGSIEYWP-DPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 182 v~~~~~l~~~~-d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
++.- ++. +-...+.++.+++|+||.|++-..
T Consensus 153 aFvD----adK~nY~~y~e~~l~Llr~GGvi~~DNv 184 (237)
T KOG1663|consen 153 AFVD----ADKDNYSNYYERLLRLLRVGGVIVVDNV 184 (237)
T ss_pred EEEc----cchHHHHHHHHHHHhhcccccEEEEecc
Confidence 9963 222 224788999999999999988753
No 223
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=2e-05 Score=74.76 Aligned_cols=138 Identities=21% Similarity=0.208 Sum_probs=94.5
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCC
Q 019479 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPF 174 (340)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~ 174 (340)
+.+....++.+.. .++.+|||+=||.|.++..+++. ..+|+|+|+++++++.|++++ ...|++|+.+++++...
T Consensus 279 ekl~~~a~~~~~~-~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~ 355 (432)
T COG2265 279 EKLYETALEWLEL-AGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTP 355 (432)
T ss_pred HHHHHHHHHHHhh-cCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhh
Confidence 4455555555554 36789999999999999999976 689999999999999999873 34679999999987542
Q ss_pred C---CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcE
Q 019479 175 P---TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKD 251 (340)
Q Consensus 175 ~---~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 251 (340)
. ...+|.|+..--=.-. ...+++.+. .++|-..++++.... |...=...|.+.|+++
T Consensus 356 ~~~~~~~~d~VvvDPPR~G~--~~~~lk~l~-~~~p~~IvYVSCNP~-----------------TlaRDl~~L~~~gy~i 415 (432)
T COG2265 356 AWWEGYKPDVVVVDPPRAGA--DREVLKQLA-KLKPKRIVYVSCNPA-----------------TLARDLAILASTGYEI 415 (432)
T ss_pred hccccCCCCEEEECCCCCCC--CHHHHHHHH-hcCCCcEEEEeCCHH-----------------HHHHHHHHHHhCCeEE
Confidence 2 3468999972100000 014445444 457778888875211 2223335778889887
Q ss_pred EEEEEeC
Q 019479 252 VKLKRIG 258 (340)
Q Consensus 252 v~~~~~~ 258 (340)
.++..+.
T Consensus 416 ~~v~~~D 422 (432)
T COG2265 416 ERVQPFD 422 (432)
T ss_pred EEEEEec
Confidence 6666654
No 224
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.16 E-value=3.3e-05 Score=64.18 Aligned_cols=122 Identities=16% Similarity=0.074 Sum_probs=87.6
Q ss_pred CchHHHHHHhccccCC-CCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---C-CCCcEEEEcCC
Q 019479 95 HWTEDMRDEALEPADL-FDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---P-LKECTIIEGDA 169 (340)
Q Consensus 95 ~~~~~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~-~~~i~~~~~d~ 169 (340)
+.+..+++.+.+.+.. .-.+.++||+=+|+|.++.+.+.+ +...++.+|.+..+....+++. . ..++.++..|+
T Consensus 24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da 102 (187)
T COG0742 24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSR-GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDA 102 (187)
T ss_pred CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecH
Confidence 4456677777777654 247999999999999999999998 3579999999999999999873 2 35678888888
Q ss_pred CCC-CCCCC--CccEEEecCccc-ccCCHHHHHHH--HHHhcccCcEEEEEccC
Q 019479 170 EDL-PFPTD--YADRYVSAGSIE-YWPDPQRGIKE--AYRVLKIGGKACVIGPV 217 (340)
Q Consensus 170 ~~~-~~~~~--~fD~v~~~~~l~-~~~d~~~~l~~--~~~~LkpgG~l~i~~~~ 217 (340)
... ..... +||+|++.--++ .+-+....+.. -...|+|+|.+++....
T Consensus 103 ~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 103 LRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred HHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 632 11222 499999966555 12222333333 34679999999887543
No 225
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.15 E-value=2.2e-05 Score=71.63 Aligned_cols=124 Identities=23% Similarity=0.201 Sum_probs=93.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC---C-CcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---K-ECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~---~-~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
..|.+|||.=+|.|.+++.++..- ..+|+++|++|.+++..++++.. . .+..+++|..+....-+.+|-|+++..
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 469999999999999999999982 34499999999999999987432 2 378899999886644477999998743
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCc
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFK 250 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~ 250 (340)
.+...++..+.+.+++||.+-..+......... .....+.....+.|++
T Consensus 266 ----~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~----------~~~~~i~~~~~~~~~~ 314 (341)
T COG2520 266 ----KSAHEFLPLALELLKDGGIIHYYEFVPEDDIEE----------RPEKRIKSAARKGGYK 314 (341)
T ss_pred ----CcchhhHHHHHHHhhcCcEEEEEeccchhhccc----------chHHHHHHHHhhccCc
Confidence 355678889999999999998776654432110 1345666777777753
No 226
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.14 E-value=8.5e-05 Score=67.41 Aligned_cols=120 Identities=22% Similarity=0.191 Sum_probs=80.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.++.++|||||++|.|+..++++ +.+|++||..+-. ......++|+....|........+.+|.++|.-+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~----~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv---- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMA----QSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV---- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcC----HhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc----
Confidence 57899999999999999999998 7799999975522 2223457888888888654323667999998543
Q ss_pred CCHHHHHHHHHHhcccC--cEEEEEc--cCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCc
Q 019479 192 PDPQRGIKEAYRVLKIG--GKACVIG--PVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFK 250 (340)
Q Consensus 192 ~d~~~~l~~~~~~Lkpg--G~l~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~ 250 (340)
..|.++++-+.+.|..| ...+++- +....+..... ..+.+.+.|.++|..
T Consensus 280 e~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~---------~l~~i~~~l~~~g~~ 333 (357)
T PRK11760 280 EKPARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQ---------CLELIEEQLDENGIN 333 (357)
T ss_pred cCHHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHH---------HHHHHHHHHHHcCCc
Confidence 46778888888888766 2333332 22222111111 234567788888873
No 227
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=1.8e-05 Score=66.75 Aligned_cols=108 Identities=25% Similarity=0.230 Sum_probs=76.5
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-------
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP------- 173 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~------- 173 (340)
.++.+...++.++.+|+|+|+-.|.|+..+++.... ..|+|+|+.|.- ..+++.++++|+...+
T Consensus 34 ~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~--------~~~~V~~iq~d~~~~~~~~~l~~ 105 (205)
T COG0293 34 LELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK--------PIPGVIFLQGDITDEDTLEKLLE 105 (205)
T ss_pred HHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc--------cCCCceEEeeeccCccHHHHHHH
Confidence 444455566778999999999999999999998633 569999995522 2357999999997633
Q ss_pred -CCCCCccEEEecCcc----cccCCHH-------HHHHHHHHhcccCcEEEEEccC
Q 019479 174 -FPTDYADRYVSAGSI----EYWPDPQ-------RGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 174 -~~~~~fD~v~~~~~l----~~~~d~~-------~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+...++|+|++-..- ++..|.. .++.-+..+|+|||.+++-.+.
T Consensus 106 ~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 106 ALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred HcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 344557999963222 1111221 5567777899999999887543
No 228
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=98.13 E-value=2.7e-05 Score=64.24 Aligned_cols=149 Identities=18% Similarity=0.061 Sum_probs=94.2
Q ss_pred ccccCCCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHH----------HHHHHHhCCCCCcEEEEcCCCCCC
Q 019479 105 LEPADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQ----------LAKAKQKEPLKECTIIEGDAEDLP 173 (340)
Q Consensus 105 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~----------~~~a~~~~~~~~i~~~~~d~~~~~ 173 (340)
+....+ +++.+|+|+=.|.|.|+..++... |...|+++-..+.. -..+++ ....|++.+-.+...+.
T Consensus 41 L~FaGl-kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e-~~~aN~e~~~~~~~A~~ 118 (238)
T COG4798 41 LAFAGL-KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAARE-PVYANVEVIGKPLVALG 118 (238)
T ss_pred eEEecc-CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhh-hhhhhhhhhCCcccccC
Confidence 444444 589999999999999999998876 33577775543321 111111 12245555555555444
Q ss_pred CCCCCccEEEecCccccc-------CCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHH
Q 019479 174 FPTDYADRYVSAGSIEYW-------PDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQK 246 (340)
Q Consensus 174 ~~~~~fD~v~~~~~l~~~-------~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 246 (340)
+....|+++.....|.+ .....+.+.+++.|||||.+++.+.......- ..........+........+.
T Consensus 119 -~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~--~~dt~~~~ri~~a~V~a~vea 195 (238)
T COG4798 119 -APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSG--LSDTITLHRIDPAVVIAEVEA 195 (238)
T ss_pred -CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCC--hhhhhhhcccChHHHHHHHHh
Confidence 44456777765444433 23357899999999999999998764332110 001111224578889999999
Q ss_pred CCCcEEEEEEeC
Q 019479 247 AGFKDVKLKRIG 258 (340)
Q Consensus 247 aGF~~v~~~~~~ 258 (340)
+||+..-..++.
T Consensus 196 aGFkl~aeS~il 207 (238)
T COG4798 196 AGFKLEAESEIL 207 (238)
T ss_pred hcceeeeeehhh
Confidence 999987777664
No 229
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.11 E-value=7.9e-06 Score=69.73 Aligned_cols=115 Identities=20% Similarity=0.200 Sum_probs=69.3
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh----------C--CCCCcEEEEc
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----------E--PLKECTIIEG 167 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~----------~--~~~~i~~~~~ 167 (340)
....++....+ .++...+|||||.|......+-..+-.+++|||+.+...+.|+.. . ....+++..+
T Consensus 30 ~~~~il~~~~l-~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 30 FVSKILDELNL-TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHHHHhCC-CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 34444555544 478899999999999998888776556699999999888777632 1 1245778899
Q ss_pred CCCCCCCC---CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 168 DAEDLPFP---TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 168 d~~~~~~~---~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
|+.+.++. -...|+|++++.+.. ++....|.+....||+|.+++-..+
T Consensus 109 dfl~~~~~~~~~s~AdvVf~Nn~~F~-~~l~~~L~~~~~~lk~G~~IIs~~~ 159 (205)
T PF08123_consen 109 DFLDPDFVKDIWSDADVVFVNNTCFD-PDLNLALAELLLELKPGARIISTKP 159 (205)
T ss_dssp -TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEESS-
T ss_pred CccccHhHhhhhcCCCEEEEeccccC-HHHHHHHHHHHhcCCCCCEEEECCC
Confidence 98653211 134699999887642 2344667888889999988765443
No 230
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.11 E-value=9.5e-06 Score=74.32 Aligned_cols=141 Identities=19% Similarity=0.227 Sum_probs=84.8
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC-------CCceEEEEeCCHHHHHHHHHhC--C---CCCcEEEEcCCCCCCCC--CC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV-------DAKNVTILDQSPHQLAKAKQKE--P---LKECTIIEGDAEDLPFP--TD 177 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~-------~~~~v~g~D~s~~~~~~a~~~~--~---~~~i~~~~~d~~~~~~~--~~ 177 (340)
.++.+|+|.+||+|.+...+.+.. ....++|+|+++.++..++-+. . ..+..+..+|....+.. ..
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~ 124 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ 124 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 467789999999999998887742 5789999999999999887552 1 12345778887543322 46
Q ss_pred CccEEEecCccccc--C------C------------H-HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCC
Q 019479 178 YADRYVSAGSIEYW--P------D------------P-QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPK 236 (340)
Q Consensus 178 ~fD~v~~~~~l~~~--~------d------------~-~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 236 (340)
.||+|+++--+... . + . ..++..+.+.||+||++.++.+.. .+.. -..
T Consensus 125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~---~L~~--------~~~ 193 (311)
T PF02384_consen 125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG---FLFS--------SSS 193 (311)
T ss_dssp -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH---HHHG--------STH
T ss_pred ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch---hhhc--------cch
Confidence 89999986433322 1 0 1 157899999999999987775421 1000 001
Q ss_pred HHHHHHHHHHCCCcEEEEEEeCCccccc
Q 019479 237 EEEYIEWFQKAGFKDVKLKRIGPKWYRG 264 (340)
Q Consensus 237 ~~~~~~~l~~aGF~~v~~~~~~~~~~~~ 264 (340)
...+++.|-+.+. +..+..+....+..
T Consensus 194 ~~~iR~~ll~~~~-i~aVI~Lp~~~F~~ 220 (311)
T PF02384_consen 194 EKKIRKYLLENGY-IEAVISLPSNLFKP 220 (311)
T ss_dssp HHHHHHHHHHHEE-EEEEEE--TTSSSS
T ss_pred HHHHHHHHHhhch-hhEEeecccceecc
Confidence 3456666655433 44556665544433
No 231
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.06 E-value=2.1e-05 Score=73.38 Aligned_cols=98 Identities=12% Similarity=0.172 Sum_probs=78.3
Q ss_pred CCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhCC---CCCcEEEEcCCCCCC-CCCCCccEEEecCcc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP---LKECTIIEGDAEDLP-FPTDYADRYVSAGSI 188 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~---~~~i~~~~~d~~~~~-~~~~~fD~v~~~~~l 188 (340)
+.+|||+.||+|..++.++.+.++ .+|+++|+++.+++.++++.. ..++++.+.|+..+- .....||+|.+.- +
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 368999999999999999988533 689999999999999998743 245788888886532 1235699999854 3
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
..+..++..+.+.+++||.|.++-
T Consensus 124 ---Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 ---GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ---CCcHHHHHHHHHhcccCCEEEEEe
Confidence 244579999999999999999983
No 232
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.06 E-value=3e-05 Score=64.18 Aligned_cols=103 Identities=18% Similarity=0.201 Sum_probs=75.5
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCC--CcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--ECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
-.+++|||+|+|+|..++..++. +...|+..|+.|-....++-+...+ ++.+...|.-. .+..||+++...+++
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy 153 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFY 153 (218)
T ss_pred cccceeeecccccChHHHHHHHh-hhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceec
Confidence 47999999999999999998887 4578999999887777776554433 35666666643 566799999999998
Q ss_pred ccCCHHHHHHHHHHhcc-cCcEEEEEccCCC
Q 019479 190 YWPDPQRGIKEAYRVLK-IGGKACVIGPVYP 219 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~Lk-pgG~l~i~~~~~~ 219 (340)
.-+..++.+. +.+.|+ .|-.+++-++..+
T Consensus 154 ~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 154 NHTEADRLIP-WKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred CchHHHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence 7666667777 455554 4555555566554
No 233
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=0.00016 Score=67.33 Aligned_cols=130 Identities=21% Similarity=0.268 Sum_probs=91.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCC--ceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCC---CCCCCccEEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLP---FPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~---~~~~~fD~v~ 183 (340)
.++.+|||..++.|.=+..+++...+ ..|+++|.++.-++..+++ .+..|+.....|....+ ....+||.|+
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iL 234 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRIL 234 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEE
Confidence 57899999999999999999998654 5679999999888887765 45567778888875443 2223599999
Q ss_pred ec------CcccccCCH----------------HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHH
Q 019479 184 SA------GSIEYWPDP----------------QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYI 241 (340)
Q Consensus 184 ~~------~~l~~~~d~----------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (340)
+- +++..-++. .++|..+.+.|||||.|+-.+..... ..+.+.+.
T Consensus 235 lDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~-------------eENE~vV~ 301 (355)
T COG0144 235 LDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP-------------EENEEVVE 301 (355)
T ss_pred ECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch-------------hcCHHHHH
Confidence 73 223211211 17899999999999999887654321 12456666
Q ss_pred HHHHHC-CCcEEEE
Q 019479 242 EWFQKA-GFKDVKL 254 (340)
Q Consensus 242 ~~l~~a-GF~~v~~ 254 (340)
..+++. +|+.+..
T Consensus 302 ~~L~~~~~~~~~~~ 315 (355)
T COG0144 302 RFLERHPDFELEPV 315 (355)
T ss_pred HHHHhCCCceeecc
Confidence 677665 6655443
No 234
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=0.00022 Score=59.36 Aligned_cols=145 Identities=15% Similarity=0.151 Sum_probs=98.5
Q ss_pred HHHHHHhccccC--CCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHH----HHHHHhCCCCCcEEEEcCCCC
Q 019479 98 EDMRDEALEPAD--LFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQL----AKAKQKEPLKECTIIEGDAED 171 (340)
Q Consensus 98 ~~~~~~~l~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~----~~a~~~~~~~~i~~~~~d~~~ 171 (340)
..+...++.-+. ...++.+||-+|..+|.....+++-.+...+++++.|+... ..|+++ +|+-.+.+|+..
T Consensus 59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~ 135 (231)
T COG1889 59 SKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARK 135 (231)
T ss_pred hHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCC
Confidence 344555555443 23589999999999999999999988778999999999654 444443 788889999965
Q ss_pred CC---CCCCCccEEEecCcccccC--CHH-HHHHHHHHhcccCcEEEEEccCCCc---hhHhhHhhhHhhcCCCHHHHHH
Q 019479 172 LP---FPTDYADRYVSAGSIEYWP--DPQ-RGIKEAYRVLKIGGKACVIGPVYPT---FWLSRFFADVWMLFPKEEEYIE 242 (340)
Q Consensus 172 ~~---~~~~~fD~v~~~~~l~~~~--d~~-~~l~~~~~~LkpgG~l~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 242 (340)
.. .--+..|+|+. .+. +.. -+..++...||+||.+++.--.... ...... -++-.+
T Consensus 136 P~~Y~~~Ve~VDviy~-----DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~v----------f~~ev~ 200 (231)
T COG1889 136 PEKYRHLVEKVDVIYQ-----DVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEV----------FKDEVE 200 (231)
T ss_pred cHHhhhhcccccEEEE-----ecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHH----------HHHHHH
Confidence 22 23456899886 333 332 4567889999999987775322110 000011 123345
Q ss_pred HHHHCCCcEEEEEEeCCc
Q 019479 243 WFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 243 ~l~~aGF~~v~~~~~~~~ 260 (340)
.|++.||++++...+.+.
T Consensus 201 kL~~~~f~i~e~~~LePy 218 (231)
T COG1889 201 KLEEGGFEILEVVDLEPY 218 (231)
T ss_pred HHHhcCceeeEEeccCCc
Confidence 788899999999888653
No 235
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.02 E-value=8.9e-05 Score=63.31 Aligned_cols=121 Identities=21% Similarity=0.260 Sum_probs=83.1
Q ss_pred EEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCC-CCCCCCCccEEEecCccccc
Q 019479 117 VVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAED-LPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 117 vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~ 191 (340)
|.||||-.|.+...+.+.....+++++|+++..++.|++... ..++++..+|-.+ ++ +.+..|.|+..++-...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC-CCCCCCEEEEecCCHHH
Confidence 689999999999999998544689999999999999997632 3569999999643 43 22337888887765532
Q ss_pred CCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 192 PDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
...+|.+....++....+++.. +. ....++++|.+.||.+++..-+.
T Consensus 80 --I~~ILe~~~~~~~~~~~lILqP-~~-----------------~~~~LR~~L~~~gf~I~~E~lv~ 126 (205)
T PF04816_consen 80 --IIEILEAGPEKLSSAKRLILQP-NT-----------------HAYELRRWLYENGFEIIDEDLVE 126 (205)
T ss_dssp --HHHHHHHTGGGGTT--EEEEEE-SS------------------HHHHHHHHHHTTEEEEEEEEEE
T ss_pred --HHHHHHhhHHHhccCCeEEEeC-CC-----------------ChHHHHHHHHHCCCEEEEeEEEe
Confidence 3456676666666555666553 22 46788999999999998877663
No 236
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=6e-05 Score=64.55 Aligned_cols=146 Identities=22% Similarity=0.166 Sum_probs=96.0
Q ss_pred HhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcE-EEEcCCCCCC---CCCCC
Q 019479 103 EALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECT-IIEGDAEDLP---FPTDY 178 (340)
Q Consensus 103 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~-~~~~d~~~~~---~~~~~ 178 (340)
.+++...+..++..+||||+.||.|+..++++ +..+|+++|..-.++.+--+. ++++. +...|+..+. +. +.
T Consensus 69 ~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~kLR~--d~rV~~~E~tN~r~l~~~~~~-~~ 144 (245)
T COG1189 69 KALEEFELDVKGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWKLRN--DPRVIVLERTNVRYLTPEDFT-EK 144 (245)
T ss_pred HHHHhcCcCCCCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHhHhc--CCcEEEEecCChhhCCHHHcc-cC
Confidence 34455555568999999999999999999998 457999999988777664432 24433 3445554432 22 25
Q ss_pred ccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHh-------hhHhhcCCCHHHHHHHHHHCCCcE
Q 019479 179 ADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFF-------ADVWMLFPKEEEYIEWFQKAGFKD 251 (340)
Q Consensus 179 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~aGF~~ 251 (340)
.|++++.-++. ....+|..+..+++|++.++... .|.....+.. .+......-..++.+++++.||++
T Consensus 145 ~d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~Lv--KPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~ 219 (245)
T COG1189 145 PDLIVIDVSFI---SLKLILPALLLLLKDGGDLVLLV--KPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQV 219 (245)
T ss_pred CCeEEEEeehh---hHHHHHHHHHHhcCCCceEEEEe--cchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEE
Confidence 78999876655 45689999999999998876542 1212111111 111111123577888999999998
Q ss_pred EEEEEe
Q 019479 252 VKLKRI 257 (340)
Q Consensus 252 v~~~~~ 257 (340)
..+..-
T Consensus 220 ~gl~~S 225 (245)
T COG1189 220 KGLIKS 225 (245)
T ss_pred eeeEcc
Confidence 776543
No 237
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.01 E-value=6.6e-06 Score=67.17 Aligned_cols=69 Identities=23% Similarity=0.248 Sum_probs=50.6
Q ss_pred CEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CC-CCCcEEEEcCCCCCC--CCCCC-ccEEEec
Q 019479 115 MRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EP-LKECTIIEGDAEDLP--FPTDY-ADRYVSA 185 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~-~~~i~~~~~d~~~~~--~~~~~-fD~v~~~ 185 (340)
..|+|+.||.|..++.+++. ..+|+++|+++..++.|+.+ .+ .++++++++|+.+.. +.... +|+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 36999999999999999998 57899999999999999977 22 468999999996642 22222 8999974
No 238
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.98 E-value=3.8e-05 Score=75.44 Aligned_cols=77 Identities=17% Similarity=0.149 Sum_probs=54.1
Q ss_pred CCCEEEEEcCccchHHHHHHHhCC--------CceEEEEeCCHHHHHHHHHhCCC---CCcEEEEcCCCCC-----CCCC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVD--------AKNVTILDQSPHQLAKAKQKEPL---KECTIIEGDAEDL-----PFPT 176 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~--------~~~v~g~D~s~~~~~~a~~~~~~---~~i~~~~~d~~~~-----~~~~ 176 (340)
...+|||.|||+|.+...+++..+ ...++|+|+++.++..++.++.. ..+.+...|.... ....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 456999999999999999887653 15789999999999999876321 1344555554321 1112
Q ss_pred CCccEEEecCccc
Q 019479 177 DYADRYVSAGSIE 189 (340)
Q Consensus 177 ~~fD~v~~~~~l~ 189 (340)
+.||+|+.+--..
T Consensus 111 ~~fD~IIgNPPy~ 123 (524)
T TIGR02987 111 DLFDIVITNPPYG 123 (524)
T ss_pred CcccEEEeCCCcc
Confidence 5799999974443
No 239
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.95 E-value=4.5e-05 Score=70.96 Aligned_cols=70 Identities=31% Similarity=0.429 Sum_probs=50.8
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCC
Q 019479 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAED 171 (340)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~ 171 (340)
+.+...+++.+... + .+|||+-||.|.++..+++. ..+|+|+|.++.+++.|+++ ....|++|+.++.++
T Consensus 183 ~~l~~~~~~~l~~~-~-~~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 183 EKLYEQALEWLDLS-K-GDVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHHHHHCTT--T-TEEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred HHHHHHHHHHhhcC-C-CcEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 44555566666542 3 38999999999999999998 57999999999999999977 345789999887754
No 240
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.93 E-value=5.5e-05 Score=67.47 Aligned_cols=104 Identities=16% Similarity=0.232 Sum_probs=76.2
Q ss_pred HHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCCCCCC
Q 019479 98 EDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLPFPT 176 (340)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~~~~~ 176 (340)
..+.+.+++.+... ++..|||||+|.|.++..+++. +.+++++|.++..++..+++.. .++++++.+|+.++....
T Consensus 16 ~~~~~~Iv~~~~~~-~~~~VlEiGpG~G~lT~~L~~~--~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 16 PNIADKIVDALDLS-EGDTVLEIGPGPGALTRELLKR--GKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYD 92 (262)
T ss_dssp HHHHHHHHHHHTCG-TTSEEEEESSTTSCCHHHHHHH--SSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGG
T ss_pred HHHHHHHHHhcCCC-CCCEEEEeCCCCccchhhHhcc--cCcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHH
Confidence 44556666666543 7899999999999999999998 4899999999999999998754 678999999998876544
Q ss_pred ---CCccEEEecCcccccCCHHHHHHHHHHhccc
Q 019479 177 ---DYADRYVSAGSIEYWPDPQRGIKEAYRVLKI 207 (340)
Q Consensus 177 ---~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkp 207 (340)
.....|+++--. ++ ...++.++...-+.
T Consensus 93 ~~~~~~~~vv~NlPy-~i--s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 93 LLKNQPLLVVGNLPY-NI--SSPILRKLLELYRF 123 (262)
T ss_dssp HCSSSEEEEEEEETG-TG--HHHHHHHHHHHGGG
T ss_pred hhcCCceEEEEEecc-cc--hHHHHHHHhhcccc
Confidence 344566665333 22 23566666663333
No 241
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.88 E-value=6.4e-06 Score=65.33 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=44.8
Q ss_pred cEEEEcCCCCCCCCCCCccEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEEccC
Q 019479 162 CTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 162 i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+.+++-.....+|.+++.|+|++.++++|+.-. ..++++|+|.|||||+|-+..|.
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 344443344567899999999999999999644 37899999999999999987654
No 242
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.88 E-value=8.3e-05 Score=61.04 Aligned_cols=104 Identities=23% Similarity=0.152 Sum_probs=70.2
Q ss_pred ccCCCCCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEc-CCCCC--------CCCC
Q 019479 107 PADLFDRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECTIIEG-DAEDL--------PFPT 176 (340)
Q Consensus 107 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~-d~~~~--------~~~~ 176 (340)
...++.++.+|||+||-.|.|+.-..++. |.+.|.|+|+-.- ...++++++++ |+.+. .+++
T Consensus 63 Ky~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 63 KYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EPPEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred hccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cCCCCcccccccccCCHHHHHHHHHhCCC
Confidence 34556789999999999999999988886 8899999999321 22345666666 66541 1567
Q ss_pred CCccEEEecCcc----cccCCHHHHHHHH-------HHhcccCcEEEEEccCC
Q 019479 177 DYADRYVSAGSI----EYWPDPQRGIKEA-------YRVLKIGGKACVIGPVY 218 (340)
Q Consensus 177 ~~fD~v~~~~~l----~~~~d~~~~l~~~-------~~~LkpgG~l~i~~~~~ 218 (340)
...|+|++...- ..+.|....++-| ...++|+|.+++-....
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 789998863221 1223444444444 45678999998875443
No 243
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.86 E-value=0.00017 Score=66.48 Aligned_cols=123 Identities=15% Similarity=0.057 Sum_probs=86.9
Q ss_pred CCCCchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCC--------------------------------c-
Q 019479 92 NPGHWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDA--------------------------------K- 138 (340)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~--------------------------------~- 138 (340)
.+.+..+.+...++...... ++..++|--||+|.++++.+...++ .
T Consensus 171 g~ApLketLAaAil~lagw~-~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~ 249 (381)
T COG0116 171 GPAPLKETLAAAILLLAGWK-PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERAR 249 (381)
T ss_pred CCCCchHHHHHHHHHHcCCC-CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHh
Confidence 44456677778888777764 5689999999999999998877531 1
Q ss_pred ------eEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCCCCccEEEecCcccc-cCCH---H----HHHHH
Q 019479 139 ------NVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPTDYADRYVSAGSIEY-WPDP---Q----RGIKE 200 (340)
Q Consensus 139 ------~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~~d~---~----~~l~~ 200 (340)
.++|+|+++.+++.|+.++. .+-|+|.++|+..+..+-+.+|+||++--..- +.+. . .+.+.
T Consensus 250 ~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~ 329 (381)
T COG0116 250 RGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRT 329 (381)
T ss_pred hcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHH
Confidence 37799999999999998732 24589999999887644378999999755431 2222 2 23334
Q ss_pred HHHhcccCcEEEEEc
Q 019479 201 AYRVLKIGGKACVIG 215 (340)
Q Consensus 201 ~~~~LkpgG~l~i~~ 215 (340)
+.+.++--++.+++.
T Consensus 330 lk~~~~~ws~~v~tt 344 (381)
T COG0116 330 LKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHhcCCceEEEEc
Confidence 445555556666664
No 244
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.85 E-value=0.00011 Score=65.18 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=64.0
Q ss_pred CCCEEEEEcCccchH-HHHHHHhC-CCceEEEEeCCHHHHHHHHHhCC-----CCCcEEEEcCCCCCCCCCCCccEEEec
Q 019479 113 RNMRVVDVGGGTGFT-TLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP-----LKECTIIEGDAEDLPFPTDYADRYVSA 185 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~-~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~-----~~~i~~~~~d~~~~~~~~~~fD~v~~~ 185 (340)
.+.+|+=||||.=-+ ++.+++.+ ++..|+++|+++++++.+++... ..+++|+.+|..+....-..||+|+..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 356999999997555 44455443 46789999999999999987533 367999999997765444679999986
Q ss_pred Cccc-ccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 186 GSIE-YWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 186 ~~l~-~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.... .-.+..+++.++.+.++||..+++-.
T Consensus 200 alVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 200 ALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 6554 33466799999999999999988763
No 245
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.81 E-value=0.00017 Score=57.93 Aligned_cols=96 Identities=22% Similarity=0.316 Sum_probs=66.1
Q ss_pred CCCCEEEEEcCccchHHHHHHH-----hCCCceEEEEeCCHHHHHHHHHhC---C---CCCcEEEEcCCCCCCCCCCCcc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVK-----HVDAKNVTILDQSPHQLAKAKQKE---P---LKECTIIEGDAEDLPFPTDYAD 180 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~-----~~~~~~v~g~D~s~~~~~~a~~~~---~---~~~i~~~~~d~~~~~~~~~~fD 180 (340)
.+..+|+|+|||.|.++..++. . ++.+|+++|.++..++.+.++. . ..++.+..++..+.. .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 4678999999999999999999 5 6789999999999998888662 2 145666666654432 245567
Q ss_pred EEEecCcccccCCHHHHHHHHHHhcccCcEEEEE
Q 019479 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 181 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
+++.-+....+. ..+++.+.+ ++-..++.
T Consensus 102 ~~vgLHaCG~Ls--~~~l~~~~~---~~~~~l~~ 130 (141)
T PF13679_consen 102 ILVGLHACGDLS--DRALRLFIR---PNARFLVL 130 (141)
T ss_pred EEEEeecccchH--HHHHHHHHH---cCCCEEEE
Confidence 888755555432 245555554 55554443
No 246
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.80 E-value=6.4e-05 Score=61.71 Aligned_cols=95 Identities=18% Similarity=0.230 Sum_probs=73.6
Q ss_pred CEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 115 MRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
..+.|+|+|+|.++...++. ..+|++++.+|...+.|.++. ...|++++.+|+.+..+ ...|+|+|-..=-.+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaL 109 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTAL 109 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHh
Confidence 68999999999999987776 679999999999999999884 34689999999988776 447999873211111
Q ss_pred --CCHHHHHHHHHHhcccCcEEEE
Q 019479 192 --PDPQRGIKEAYRVLKIGGKACV 213 (340)
Q Consensus 192 --~d~~~~l~~~~~~LkpgG~l~i 213 (340)
.....+++.+...||-.+.++=
T Consensus 110 i~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 110 IEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hcccccHHHHHHHHHhhcCCcccc
Confidence 1223677888888888888753
No 247
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.80 E-value=0.00011 Score=65.11 Aligned_cols=144 Identities=19% Similarity=0.141 Sum_probs=93.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHH-------HHhCC----------------C----------
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA-------KQKEP----------------L---------- 159 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a-------~~~~~----------------~---------- 159 (340)
...+||--|||.|.++..++.. +..+-|-+.|--|+-.. +.... +
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~--G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACL--GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred cCceEEecCCCchhHHHHHHHh--cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 4678999999999999999998 66677777766554221 11100 0
Q ss_pred ----------CCcEEEEcCCCCC---CCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhH
Q 019479 160 ----------KECTIIEGDAEDL---PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRF 226 (340)
Q Consensus 160 ----------~~i~~~~~d~~~~---~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~ 226 (340)
.+...-.||+.+. +-..+.||+|+.++-+..-.+.-..++.|..+|||||..+=..|..-+.....-
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g 307 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHG 307 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCC
Confidence 0111233566432 122346999999876666666668899999999999998766654322111111
Q ss_pred hhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 227 FADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
.........+.+++..+.+..||++++.+.+.
T Consensus 308 ~~~~~siEls~edl~~v~~~~GF~~~ke~~Id 339 (369)
T KOG2798|consen 308 VENEMSIELSLEDLKRVASHRGFEVEKERGID 339 (369)
T ss_pred CcccccccccHHHHHHHHHhcCcEEEEeeeee
Confidence 01111124578999999999999998887664
No 248
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.72 E-value=0.00067 Score=63.18 Aligned_cols=146 Identities=16% Similarity=0.200 Sum_probs=85.0
Q ss_pred CCCEEEEEcCccchHHHHHHHh---------------CCCceEEEEeCCHHHHH-HHH------HhC---------CCCC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKH---------------VDAKNVTILDQSPHQLA-KAK------QKE---------PLKE 161 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~---------------~~~~~v~g~D~s~~~~~-~a~------~~~---------~~~~ 161 (340)
+..+|+|+|||+|.++..+... .|..+|..-|+-..--. ..+ +.. ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 4678999999999877655321 14577888787321111 111 000 0011
Q ss_pred ---cEEEEcCCCCCCCCCCCccEEEecCcccccCCH--------------------------------------HHHHHH
Q 019479 162 ---CTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDP--------------------------------------QRGIKE 200 (340)
Q Consensus 162 ---i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~--------------------------------------~~~l~~ 200 (340)
+.-+.+++..--+|.++.+++++.+++||+... ..+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 122345665545789999999999999988521 133444
Q ss_pred HHHhcccCcEEEEEccCCCc-----------hh---HhhHhhhHhh----------------cCCCHHHHHHHHHHCC-C
Q 019479 201 AYRVLKIGGKACVIGPVYPT-----------FW---LSRFFADVWM----------------LFPKEEEYIEWFQKAG-F 249 (340)
Q Consensus 201 ~~~~LkpgG~l~i~~~~~~~-----------~~---~~~~~~~~~~----------------~~~~~~~~~~~l~~aG-F 249 (340)
=.+-|.|||+++++...... .+ ....+.++.. ..++.+|+++.+++.| |
T Consensus 223 Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF 302 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSF 302 (386)
T ss_pred HHHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCE
Confidence 45678999999988543321 01 1111111111 1468999999999887 5
Q ss_pred cEEEEEEeC
Q 019479 250 KDVKLKRIG 258 (340)
Q Consensus 250 ~~v~~~~~~ 258 (340)
++.+++.+.
T Consensus 303 ~I~~le~~~ 311 (386)
T PLN02668 303 AIDKLEVFK 311 (386)
T ss_pred EeeeeEEee
Confidence 555554443
No 249
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.71 E-value=0.00014 Score=65.57 Aligned_cols=88 Identities=16% Similarity=0.212 Sum_probs=69.1
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--CCcEEEEcCCCCCC----
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECTIIEGDAEDLP---- 173 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~i~~~~~d~~~~~---- 173 (340)
+.+++++.+.. .++..++|.-+|.|..+..+++..+.++|+|+|.++.+++.++++... .++.++++++.++.
T Consensus 8 ll~Evl~~L~~-~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 8 LLDEVVEGLNI-KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred hHHHHHHhcCc-CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHH
Confidence 44555555544 467899999999999999999988779999999999999999987532 47999999997643
Q ss_pred -CCCCCccEEEecCcc
Q 019479 174 -FPTDYADRYVSAGSI 188 (340)
Q Consensus 174 -~~~~~fD~v~~~~~l 188 (340)
...+++|.|++...+
T Consensus 87 ~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 87 ELLVTKIDGILVDLGV 102 (305)
T ss_pred hcCCCcccEEEEeccC
Confidence 233569999976444
No 250
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.71 E-value=0.00024 Score=66.94 Aligned_cols=101 Identities=21% Similarity=0.323 Sum_probs=83.4
Q ss_pred CEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCCCCCCCccEEEecCcccccC
Q 019479 115 MRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 192 (340)
.++|-+|||.-.++..+-+. +...++-+|+|+..++....+.. .+-..+...|...+.+++++||+|+....++++.
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 48999999999888887665 34689999999999999887643 2347889999999999999999999999998873
Q ss_pred CH-H---------HHHHHHHHhcccCcEEEEEcc
Q 019479 193 DP-Q---------RGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 193 d~-~---------~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.. . ..+.++.|+|++||+.+.+..
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 22 1 457899999999999877654
No 251
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.65 E-value=1.1e-05 Score=61.43 Aligned_cols=97 Identities=21% Similarity=0.309 Sum_probs=42.5
Q ss_pred EEEcCccchHHHHHHHhCCC---ceEEEEeCCHH---HHHHHHHhCCCCCcEEEEcCCCCC-C-CCCCCccEEEecCccc
Q 019479 118 VDVGGGTGFTTLGIVKHVDA---KNVTILDQSPH---QLAKAKQKEPLKECTIIEGDAEDL-P-FPTDYADRYVSAGSIE 189 (340)
Q Consensus 118 LDiGcG~G~~~~~l~~~~~~---~~v~g~D~s~~---~~~~a~~~~~~~~i~~~~~d~~~~-~-~~~~~fD~v~~~~~l~ 189 (340)
||||+..|..+..+++..+. .+++++|..+. .-+..++.....+++++.++..+. + +..+++|+++.-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 69999999999888876543 37999999883 444444322235799999999542 2 3357899999754 23
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
..+.....++.+.+.|+|||.+++-+
T Consensus 80 ~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 SYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 23344567889999999999998754
No 252
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.60 E-value=0.0002 Score=57.44 Aligned_cols=56 Identities=20% Similarity=0.303 Sum_probs=46.7
Q ss_pred EEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---CCCcEEEEcCCCC
Q 019479 116 RVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECTIIEGDAED 171 (340)
Q Consensus 116 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~i~~~~~d~~~ 171 (340)
+|+|||||.|.++..+++..+..+++++|+++.+.+.++++.. .+++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 4899999999999999999877899999999999999887632 3457777776644
No 253
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.60 E-value=0.00021 Score=60.29 Aligned_cols=72 Identities=24% Similarity=0.187 Sum_probs=58.1
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCC----CCCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDL----PFPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~----~~~~~~fD~v~~ 184 (340)
....|+|.-||.|..++.++.+ +..|+++|++|.-+..|+.++. .++|+|+++|+.++ .+....+|+|+.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 4568999999999999999998 6789999999999999998743 35899999999653 344445777776
Q ss_pred cC
Q 019479 185 AG 186 (340)
Q Consensus 185 ~~ 186 (340)
..
T Consensus 172 sp 173 (263)
T KOG2730|consen 172 SP 173 (263)
T ss_pred CC
Confidence 54
No 254
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.50 E-value=0.00037 Score=62.79 Aligned_cols=129 Identities=23% Similarity=0.303 Sum_probs=90.2
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC-CceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCC--CCCCCCccEEEec
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDL--PFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~--~~~~~~fD~v~~~ 185 (340)
.++.+|||++++.|.-+..+++... ...+++.|+++.-+...+++ .+..++.....|.... ......||.|++.
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence 4788999999999999999999875 58999999999988888754 5567778777777543 1233469999972
Q ss_pred ------CcccccCCH----------------HHHHHHHHHhc----ccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHH
Q 019479 186 ------GSIEYWPDP----------------QRGIKEAYRVL----KIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEE 239 (340)
Q Consensus 186 ------~~l~~~~d~----------------~~~l~~~~~~L----kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (340)
.++..-++. .++|+.+.+.+ ||||+++-.+..... ..+.+.
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~-------------eENE~v 230 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP-------------EENEEV 230 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG-------------GGTHHH
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH-------------HHHHHH
Confidence 222222222 16899999999 999999877543211 124556
Q ss_pred HHHHHHHC-CCcEEE
Q 019479 240 YIEWFQKA-GFKDVK 253 (340)
Q Consensus 240 ~~~~l~~a-GF~~v~ 253 (340)
+...+++. .|+.+.
T Consensus 231 V~~fl~~~~~~~l~~ 245 (283)
T PF01189_consen 231 VEKFLKRHPDFELVP 245 (283)
T ss_dssp HHHHHHHSTSEEEEC
T ss_pred HHHHHHhCCCcEEEe
Confidence 66677765 555443
No 255
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.46 E-value=0.00089 Score=53.11 Aligned_cols=112 Identities=18% Similarity=0.191 Sum_probs=69.2
Q ss_pred eEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCC--CCCCCccEEEecCcccccCC------HH---HHHHHHHH
Q 019479 139 NVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLP--FPTDYADRYVSAGSIEYWPD------PQ---RGIKEAYR 203 (340)
Q Consensus 139 ~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~--~~~~~fD~v~~~~~l~~~~d------~~---~~l~~~~~ 203 (340)
+|+|+|+.+++++.+++++. ..+++++..+=+.+. .+.+++|+++.+...-.-.| ++ .+++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 58999999999999998843 246899888776654 23347999998744332222 22 67899999
Q ss_pred hcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 204 VLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 204 ~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
.|+|||.+.++...-+....... ....+|.+-|....|.+.....++
T Consensus 81 lL~~gG~i~iv~Y~GH~gG~eE~--------~av~~~~~~L~~~~~~V~~~~~~N 127 (140)
T PF06962_consen 81 LLKPGGIITIVVYPGHPGGKEES--------EAVEEFLASLDQKEFNVLKYQFIN 127 (140)
T ss_dssp HEEEEEEEEEEE--STCHHHHHH--------HHHHHHHHTS-TTTEEEEEEEESS
T ss_pred hhccCCEEEEEEeCCCCCCHHHH--------HHHHHHHHhCCcceEEEEEEEccC
Confidence 99999999888654322111110 013445555666788888777765
No 256
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.45 E-value=0.002 Score=54.70 Aligned_cols=127 Identities=18% Similarity=0.173 Sum_probs=91.8
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
+.+.++.||||-.+.+...+.+..+...+++.|+++..++.|.+... .++++...+|-...--.+..+|.|+..++
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM 94 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC
Confidence 35677999999999999999999888999999999999999987643 24577788887432223446899988776
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
-... ...+|++-.+.|+-=-++++. |+. ...+++++|.+.+|+++...-+.
T Consensus 95 GG~l--I~~ILee~~~~l~~~~rlILQ-Pn~-----------------~~~~LR~~L~~~~~~I~~E~ile 145 (226)
T COG2384 95 GGTL--IREILEEGKEKLKGVERLILQ-PNI-----------------HTYELREWLSANSYEIKAETILE 145 (226)
T ss_pred cHHH--HHHHHHHhhhhhcCcceEEEC-CCC-----------------CHHHHHHHHHhCCceeeeeeeec
Confidence 5532 235566666666533345444 332 46788999999999987766554
No 257
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.35 E-value=0.0012 Score=57.44 Aligned_cols=138 Identities=13% Similarity=0.019 Sum_probs=80.5
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--CCCCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--PLKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~--~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
+.+.+|+|||||.=-++.......++..++|+|++..+++...... ...+.++...|+..-+ +....|+.++.-+++
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKTLP 182 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET-HH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHHHH
Confidence 3578999999999999888887777889999999999999988652 2256677788886543 456689999999888
Q ss_pred ccCCHHH-HHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 190 YWPDPQR-GIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 190 ~~~d~~~-~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
.+..... .--++.+.++ .-.++++.|...-.....-+.. .-...+..++...|+. ++...+
T Consensus 183 ~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL~gR~~gm~~-----~y~~~fe~~~~~~~~~-~~~~~~ 244 (251)
T PF07091_consen 183 CLERQRRGAGLELLDALR-SPHVVVSFPTRSLGGRNKGMEQ-----TYSAWFEALAAERGWI-VDRLTF 244 (251)
T ss_dssp HHHHHSTTHHHHHHHHSC-ESEEEEEEES-------TTHHH-----CHHHHHHHHCCTTCEE-EEEEEE
T ss_pred HHHHHhcchHHHHHHHhC-CCeEEEeccccccccCcccccc-----CHHHHHHHhcccCCce-eeeeec
Confidence 7754431 2122233332 2355666554432111111111 1134566666677777 333333
No 258
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.00078 Score=60.75 Aligned_cols=109 Identities=18% Similarity=0.223 Sum_probs=71.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCC----CCCCCCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKE---PLKECTIIEGDA----EDLPFPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~----~~~~~~~~~fD~v~~ 184 (340)
.+++|||+|.|.|.-+...-..+|. ..++.++.|+..-+...... ..........|+ ..++ ....|++||.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp-~ad~ytl~i~ 191 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLP-AADLYTLAIV 191 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCC-ccceeehhhh
Confidence 5678999999999887777777776 46888899887666554331 111111222333 2233 2345777776
Q ss_pred cCcccccCCH---HHHHHHHHHhcccCcEEEEEccCCCchh
Q 019479 185 AGSIEYWPDP---QRGIKEAYRVLKIGGKACVIGPVYPTFW 222 (340)
Q Consensus 185 ~~~l~~~~d~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~ 222 (340)
.+-+-+.... ...++.+..++.|||.|+|++...+..+
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf 232 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGF 232 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhH
Confidence 6555554433 2578899999999999999998876543
No 259
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.31 E-value=0.00099 Score=56.41 Aligned_cols=138 Identities=12% Similarity=0.073 Sum_probs=68.4
Q ss_pred CCCEEEEEcCccchHHHHHHHh---C-CCceEEEEeCCHHHHHHHH-H-hCCCCCcEEEEcCCCCCC-------C-CCCC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKH---V-DAKNVTILDQSPHQLAKAK-Q-KEPLKECTIIEGDAEDLP-------F-PTDY 178 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~---~-~~~~v~g~D~s~~~~~~a~-~-~~~~~~i~~~~~d~~~~~-------~-~~~~ 178 (340)
++..|+|+|.-.|..+..++.. + +.++|+|+|+......... + .-..++|+++++|..+.. . ....
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 5789999999998887776653 3 5689999999543332221 1 112378999999986532 1 1122
Q ss_pred ccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhc-CCCHHHHHHHHHHCC-CcE
Q 019479 179 ADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWML-FPKEEEYIEWFQKAG-FKD 251 (340)
Q Consensus 179 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~aG-F~~ 251 (340)
..+|+ -.+-|...+.-+.|+.....+++|+++++.+...........-...|.. -.....+.++|.+.. |++
T Consensus 112 ~vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~p~~av~~fL~~~~~f~i 185 (206)
T PF04989_consen 112 PVLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGPGNNPKTAVKEFLAEHPDFEI 185 (206)
T ss_dssp SEEEE-ESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS-------------HHHHHHHHHTTTTEEE
T ss_pred ceEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhhhhHHHHHHHHHHHHCCCcEe
Confidence 33444 4555555677788999999999999999887543322211111111211 123556777777655 443
No 260
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.23 E-value=0.0041 Score=56.85 Aligned_cols=95 Identities=20% Similarity=0.308 Sum_probs=69.4
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcC-CCCCCCCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGD-AEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d-~~~~~~~~~~fD~v~~~~~l~ 189 (340)
.++.+|+-+|+| -|..+..+++.. +.+|+++|.+++-.+.|++.... .++... ......-.+.||+|+..-.
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lGAd---~~i~~~~~~~~~~~~~~~d~ii~tv~-- 238 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLGAD---HVINSSDSDALEAVKEIADAIIDTVG-- 238 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhCCc---EEEEcCCchhhHHhHhhCcEEEECCC--
Confidence 578999999987 567888999976 59999999999999999976432 233322 2111111223999997443
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
...+....+.|++||+++++...
T Consensus 239 -----~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 -----PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -----hhhHHHHHHHHhcCCEEEEECCC
Confidence 45678889999999999998755
No 261
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.10 E-value=0.0031 Score=58.22 Aligned_cols=146 Identities=19% Similarity=0.203 Sum_probs=77.9
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC----------------CCceEEEEeCCHH-HHHHHHHh-------CCCCC--cEEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV----------------DAKNVTILDQSPH-QLAKAKQK-------EPLKE--CTII 165 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~----------------~~~~v~g~D~s~~-~~~~a~~~-------~~~~~--i~~~ 165 (340)
+..-+|+|+||.+|..+..+.... |..+|+--|+-.. .-...+.. ...++ +.-+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 466799999999999988765421 2368888887321 11111100 01133 3346
Q ss_pred EcCCCCCCCCCCCccEEEecCcccccCCH------------------------H---------------HHHHHHHHhcc
Q 019479 166 EGDAEDLPFPTDYADRYVSAGSIEYWPDP------------------------Q---------------RGIKEAYRVLK 206 (340)
Q Consensus 166 ~~d~~~~~~~~~~fD~v~~~~~l~~~~d~------------------------~---------------~~l~~~~~~Lk 206 (340)
.+.+..--+|+++.|++++.+++||+... . .+|+.=++-|+
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv 174 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELV 174 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheec
Confidence 68887666889999999999999987421 0 23444445689
Q ss_pred cCcEEEEEccCCCc--------hhHhhHhhhHhh--------------------cCCCHHHHHHHHHHCC-CcEEEEEEe
Q 019479 207 IGGKACVIGPVYPT--------FWLSRFFADVWM--------------------LFPKEEEYIEWFQKAG-FKDVKLKRI 257 (340)
Q Consensus 207 pgG~l~i~~~~~~~--------~~~~~~~~~~~~--------------------~~~~~~~~~~~l~~aG-F~~v~~~~~ 257 (340)
|||+++++....+. ......+...|. .+++.+++.+.+++.| |++.+++.+
T Consensus 175 ~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~le~~ 254 (334)
T PF03492_consen 175 PGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKLELF 254 (334)
T ss_dssp EEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEEEEE
T ss_pred cCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEEEEE
Confidence 99999987543322 011111111111 1568999999998765 665555544
No 262
>PRK10742 putative methyltransferase; Provisional
Probab=97.09 E-value=0.0017 Score=56.54 Aligned_cols=77 Identities=14% Similarity=0.062 Sum_probs=58.9
Q ss_pred CCC--EEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---C------CC---CCcEEEEcCCCCC-CCCCC
Q 019479 113 RNM--RVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---E------PL---KECTIIEGDAEDL-PFPTD 177 (340)
Q Consensus 113 ~~~--~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~------~~---~~i~~~~~d~~~~-~~~~~ 177 (340)
++. +|||+-+|.|..+..++.. |++|+++|-++.+....++. . .. .+++++.+|..++ .-...
T Consensus 86 ~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~ 163 (250)
T PRK10742 86 GDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP 163 (250)
T ss_pred CCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCC
Confidence 445 8999999999999999998 88899999999887776643 1 11 4578888888552 22234
Q ss_pred CccEEEecCccccc
Q 019479 178 YADRYVSAGSIEYW 191 (340)
Q Consensus 178 ~fD~v~~~~~l~~~ 191 (340)
+||+|++--++.|-
T Consensus 164 ~fDVVYlDPMfp~~ 177 (250)
T PRK10742 164 RPQVVYLDPMFPHK 177 (250)
T ss_pred CCcEEEECCCCCCC
Confidence 79999998777664
No 263
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.00066 Score=64.28 Aligned_cols=65 Identities=31% Similarity=0.401 Sum_probs=53.2
Q ss_pred hccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---CCCcEEEEcCCCC
Q 019479 104 ALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECTIIEGDAED 171 (340)
Q Consensus 104 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~i~~~~~d~~~ 171 (340)
+-+++.. +.+..+||+.||||.++..+++. ..+|+|+++++++++-|+.++. ..|++|+++-+++
T Consensus 375 i~e~~~l-~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 375 IGEWAGL-PADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred HHHHhCC-CCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 3344444 46799999999999999999987 6899999999999999998744 4678999996655
No 264
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.05 E-value=0.0013 Score=59.35 Aligned_cols=83 Identities=20% Similarity=0.250 Sum_probs=59.7
Q ss_pred HHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCC-----C
Q 019479 102 DEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLP-----F 174 (340)
Q Consensus 102 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~-----~ 174 (340)
.+.++.+.. .++..++|.--|.|..+..+++.+|+++++|+|.++.+++.++++.. .+++.++.+++.++. .
T Consensus 10 ~Evl~~L~~-~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~~ 88 (310)
T PF01795_consen 10 KEVLEALNP-KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKEL 88 (310)
T ss_dssp HHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHHT
T ss_pred HHHHHhhCc-CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHHc
Confidence 334444433 47789999999999999999999988999999999999999998855 468999999997643 2
Q ss_pred -CCCCccEEEec
Q 019479 175 -PTDYADRYVSA 185 (340)
Q Consensus 175 -~~~~fD~v~~~ 185 (340)
...++|.|++-
T Consensus 89 ~~~~~~dgiL~D 100 (310)
T PF01795_consen 89 NGINKVDGILFD 100 (310)
T ss_dssp TTTS-EEEEEEE
T ss_pred cCCCccCEEEEc
Confidence 34578988874
No 265
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.02 E-value=0.0011 Score=62.92 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=79.1
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCH----HHHHHHHHhCCCCCcEEEEcCC-CCCCCCCCCccEEEecCc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP----HQLAKAKQKEPLKECTIIEGDA-EDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~----~~~~~a~~~~~~~~i~~~~~d~-~~~~~~~~~fD~v~~~~~ 187 (340)
.-..|+|..+|.|.|+..|.+. | |..+..-+ ..+...-. .+..-+..|. +.++.-+.+||+|++.++
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIyd----RGLIG~yhDWCE~fsTYPRTYDLlHA~~l 436 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYD----RGLIGVYHDWCEAFSTYPRTYDLLHADGL 436 (506)
T ss_pred ceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhh----cccchhccchhhccCCCCcchhheehhhh
Confidence 4568999999999999999776 2 44433322 22222222 1222344566 346667889999999988
Q ss_pred ccccCC---HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEE
Q 019479 188 IEYWPD---PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDV 252 (340)
Q Consensus 188 l~~~~d---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 252 (340)
+....+ ...+|-|+-|+|+|||.++|-+... ..++++.++....++..
T Consensus 437 fs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~-----------------vl~~v~~i~~~lrW~~~ 487 (506)
T PF03141_consen 437 FSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD-----------------VLEKVKKIAKSLRWEVR 487 (506)
T ss_pred hhhhcccccHHHHHHHhHhhcCCCceEEEeccHH-----------------HHHHHHHHHHhCcceEE
Confidence 877643 4588999999999999999987532 24566777777777754
No 266
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.80 E-value=0.073 Score=46.16 Aligned_cols=131 Identities=15% Similarity=0.080 Sum_probs=68.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--CCcEEEEcCCCC-CC-CCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECTIIEGDAED-LP-FPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~i~~~~~d~~~-~~-~~~~~fD~v~~~~~l 188 (340)
.+++||-+|=.. ..++.++-..+..+|+.+|+++..++..++.+.. -+++.+..|+.+ +| .-.++||+++..-.
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 689999999554 3344444444568999999999999888755321 238888999965 44 22478999997321
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEE
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKR 256 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 256 (340)
+.......++.+....||.-|................ ..++.+.+.+.||.+.++..
T Consensus 122 yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~-----------~~~~Q~~l~~~gl~i~dii~ 178 (243)
T PF01861_consen 122 YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDK-----------WLEVQRFLLEMGLVITDIIP 178 (243)
T ss_dssp SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHH-----------HHHHHHHHHTS--EEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHH-----------HHHHHHHHHHCCcCHHHHHh
Confidence 1122234788999999987664333332222110000 12566778899999877654
No 267
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.76 E-value=0.02 Score=55.58 Aligned_cols=100 Identities=19% Similarity=0.288 Sum_probs=69.8
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-----------CC------
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-----------LP------ 173 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-----------~~------ 173 (340)
.++.+|+-+|||. |..+...++.. |.+|+++|.+++..+.+++. . .++...|..+ +.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aesl-G---A~~v~i~~~e~~~~~~gya~~~s~~~~~~ 237 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESM-G---AEFLELDFEEEGGSGDGYAKVMSEEFIKA 237 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-C---CeEEEeccccccccccchhhhcchhHHHH
Confidence 3689999999995 77788888886 56899999999999999874 2 2222211111 00
Q ss_pred ----CCC--CCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 174 ----FPT--DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 174 ----~~~--~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+.+ ..+|+||.......-+.+..+.+++.+.+||||+++....
T Consensus 238 ~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 238 EMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 3589999866554433454456999999999999887643
No 268
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.70 E-value=0.003 Score=53.77 Aligned_cols=97 Identities=23% Similarity=0.345 Sum_probs=69.7
Q ss_pred CCCCCCEEEEEcCccchHHHHHHHhC----C-C-c---eEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-------
Q 019479 110 LFDRNMRVVDVGGGTGFTTLGIVKHV----D-A-K---NVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP------- 173 (340)
Q Consensus 110 ~~~~~~~vLDiGcG~G~~~~~l~~~~----~-~-~---~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~------- 173 (340)
++..-.+++|+..-.|.|+..+.++. + . . .++++|+.+. ...+++.-+++|+....
T Consensus 38 i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M--------aPI~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM--------APIEGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred HHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC--------CccCceEEeecccCCHhHHHHHHH
Confidence 33456789999999999999998875 1 1 1 3999999442 23467888899997632
Q ss_pred -CCCCCccEEEecC-----cccccCCHH------HHHHHHHHhcccCcEEEEE
Q 019479 174 -FPTDYADRYVSAG-----SIEYWPDPQ------RGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 174 -~~~~~fD~v~~~~-----~l~~~~d~~------~~l~~~~~~LkpgG~l~i~ 214 (340)
|..++.|+|+|.. .+|.++..- .+|.-...+|||||.++--
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 5567899999954 456554331 4566777899999998653
No 269
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.65 E-value=0.0067 Score=53.01 Aligned_cols=104 Identities=14% Similarity=0.116 Sum_probs=70.3
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-------C--CCcEEEEcCCCCC---CCCCCC-c
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------L--KECTIIEGDAEDL---PFPTDY-A 179 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-------~--~~i~~~~~d~~~~---~~~~~~-f 179 (340)
...+|||+|+|+|..+..++.. .+..|+..|. +..++..+.+.. . ..+.+...+.... .+..+. +
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~-~~~~v~ltD~-~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALL-LGAEVVLTDL-PKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHHHHH-hcceeccCCc-hhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 4678999999999777777665 4789999998 444433332211 0 1333333333221 122233 9
Q ss_pred cEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 180 DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 180 D~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
|+|++..++.+-.....++..++..|..+|.+++.....
T Consensus 164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 164 DLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred cEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 999999999988888889999999999999766665443
No 270
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.62 E-value=0.022 Score=51.29 Aligned_cols=101 Identities=21% Similarity=0.267 Sum_probs=72.6
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCC--CCC------CCCCCCccEE
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDA--EDL------PFPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~--~~~------~~~~~~fD~v 182 (340)
+.+.+||-+|+| .|..+...++.++..+|+.+|+++.-++.|++ +....+......- .++ ......+|+.
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 579999999999 48888888999888999999999999999998 4433222222111 110 1223458988
Q ss_pred EecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCC
Q 019479 183 VSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYP 219 (340)
Q Consensus 183 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~ 219 (340)
+-...++ ..++.....++.||.+++......
T Consensus 247 ~dCsG~~------~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 247 FDCSGAE------VTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred EEccCch------HHHHHHHHHhccCCEEEEeccCCC
Confidence 8765554 467778889999999888765443
No 271
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.61 E-value=0.0016 Score=49.10 Aligned_cols=81 Identities=12% Similarity=0.219 Sum_probs=42.6
Q ss_pred CccEEEecCcccccC----C--HHHHHHHHHHhcccCcEEEEEccCCCchhH-----hhHhhhHhhcCCCHHHHHHHHHH
Q 019479 178 YADRYVSAGSIEYWP----D--PQRGIKEAYRVLKIGGKACVIGPVYPTFWL-----SRFFADVWMLFPKEEEYIEWFQK 246 (340)
Q Consensus 178 ~fD~v~~~~~l~~~~----d--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~ 246 (340)
.||+|+|..+.-++- | ...+++++++.|+|||.+++.-.....+.. ......+......++++.+.|.+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~~ 80 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLLE 80 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHTS
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHHh
Confidence 489999988876541 1 137899999999999999887322111111 01111111112356678888887
Q ss_pred --CCCcEEEEEEeC
Q 019479 247 --AGFKDVKLKRIG 258 (340)
Q Consensus 247 --aGF~~v~~~~~~ 258 (340)
.||..++.....
T Consensus 81 ~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 81 PEVGFSSVEELGVP 94 (110)
T ss_dssp TTT---EEEEE---
T ss_pred cccceEEEEEcccC
Confidence 599988755543
No 272
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.56 E-value=0.0061 Score=53.95 Aligned_cols=100 Identities=22% Similarity=0.299 Sum_probs=76.5
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-------CCCCcEEEEcCCCCC--CCCCCCccEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-------PLKECTIIEGDAEDL--PFPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-------~~~~i~~~~~d~~~~--~~~~~~fD~v 182 (340)
..+++||-||.|.|...+..+++-.-..+..+|+....++..++.. ..+++....+|-..+ ....++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 3678999999999999998888722357889999998888888752 346788888887442 2346889999
Q ss_pred EecCcccccCCH---------HHHHHHHHHhcccCcEEEEEcc
Q 019479 183 VSAGSIEYWPDP---------QRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 183 ~~~~~l~~~~d~---------~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+.- .+|+ ...+.-+.+.||++|+++++..
T Consensus 200 i~d-----ssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 200 ITD-----SSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred EEe-----cCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 973 3333 2567778899999999998863
No 273
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.56 E-value=0.02 Score=48.44 Aligned_cols=115 Identities=15% Similarity=0.021 Sum_probs=68.6
Q ss_pred HHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCC--ceEEEEeCCHHHHHHHHHhCC-------------------
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEP------------------- 158 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~g~D~s~~~~~~a~~~~~------------------- 158 (340)
+.+..+..... ..+.++.|-+||.|.++.-+.-.++. ..|+|-|+++.+++.|++++.
T Consensus 39 i~qR~l~~l~~-~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e 117 (246)
T PF11599_consen 39 IFQRALHYLEG-KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYE 117 (246)
T ss_dssp HHHHHHCTSSS--S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcC-CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHH
Confidence 33333443332 36779999999999998777666544 589999999999999987620
Q ss_pred --------------------------CCCcEEEEcCCCCCC-----CCCCCccEEEecCcccccCCHH---------HHH
Q 019479 159 --------------------------LKECTIIEGDAEDLP-----FPTDYADRYVSAGSIEYWPDPQ---------RGI 198 (340)
Q Consensus 159 --------------------------~~~i~~~~~d~~~~~-----~~~~~fD~v~~~~~l~~~~d~~---------~~l 198 (340)
.......+.|+.+.. ......|+|+..--..++.+|+ .+|
T Consensus 118 ~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml 197 (246)
T PF11599_consen 118 QYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQML 197 (246)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHH
T ss_pred HcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHH
Confidence 012456777876621 1122369999876666555543 689
Q ss_pred HHHHHhcccCcEEEEEc
Q 019479 199 KEAYRVLKIGGKACVIG 215 (340)
Q Consensus 199 ~~~~~~LkpgG~l~i~~ 215 (340)
..++.+|..++++.+++
T Consensus 198 ~~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 198 NSLAPVLPERSVVAVSD 214 (246)
T ss_dssp HHHHCCS-TT-EEEEEE
T ss_pred HHHHhhCCCCcEEEEec
Confidence 99999996556666644
No 274
>PHA01634 hypothetical protein
Probab=96.54 E-value=0.014 Score=45.12 Aligned_cols=71 Identities=13% Similarity=-0.011 Sum_probs=51.1
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEe
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVS 184 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~ 184 (340)
.+++|+|||.+.|..++.++-+ +...|++++.++...+..++.....++-=......+++-.-+.||+..+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~i 98 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFVM 98 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEEE
Confidence 6899999999999999999888 4578999999999999998765433321111111234434456887765
No 275
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.52 E-value=0.015 Score=53.99 Aligned_cols=98 Identities=21% Similarity=0.261 Sum_probs=63.7
Q ss_pred CCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 113 RNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 113 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
++.+||-+||| .|..+..+++.....+|+++|.+++..+.+++.-...-+.....++.+.....+.+|+|+-...
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G---- 244 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG---- 244 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC----
Confidence 57899999986 4677778888763347999999999999998642211011111122221112235898885422
Q ss_pred CCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 192 PDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
. ...++.+.+.|++||++++...
T Consensus 245 -~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 -H-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred -C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 2467888999999999998764
No 276
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.51 E-value=0.015 Score=54.89 Aligned_cols=105 Identities=22% Similarity=0.291 Sum_probs=70.5
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcC-CCC-C-CC-CCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGD-AED-L-PF-PTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d-~~~-~-~~-~~~~fD~v~~~~ 186 (340)
.++.+||.+|||. |..+..+++..+..+++++|.+++..+.+++......+.+...+ +.. + .+ ....+|+|+-.-
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~v 262 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDAV 262 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEECC
Confidence 4688999999988 88999999987444699999999999999875322111111111 100 1 11 233689888643
Q ss_pred c---------------ccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 187 S---------------IEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 187 ~---------------l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
. ++...+....+.++.+.|+++|++++...
T Consensus 263 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 263 GMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 2 11224456688999999999999988753
No 277
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.41 E-value=0.011 Score=53.25 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=44.3
Q ss_pred CCEEEEEcCccc-hHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-----CCCcEEEEcCCCC-----CCCCCCCccEE
Q 019479 114 NMRVVDVGGGTG-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-----LKECTIIEGDAED-----LPFPTDYADRY 182 (340)
Q Consensus 114 ~~~vLDiGcG~G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-----~~~i~~~~~d~~~-----~~~~~~~fD~v 182 (340)
..++||||||.- .+.+..++.+ +.+++|+|+++..++.|+++.. ..+|+++...-.. +....+.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 578999999975 5556556655 8899999999999999997632 2457776543211 22334679999
Q ss_pred EecCcccccCC
Q 019479 183 VSAGSIEYWPD 193 (340)
Q Consensus 183 ~~~~~l~~~~d 193 (340)
+|+--++.-.+
T Consensus 182 mCNPPFy~s~~ 192 (299)
T PF05971_consen 182 MCNPPFYSSQE 192 (299)
T ss_dssp EE-----SS--
T ss_pred ecCCccccChh
Confidence 99988876543
No 278
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.41 E-value=0.015 Score=50.02 Aligned_cols=96 Identities=21% Similarity=0.167 Sum_probs=69.6
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC-CCceEEEEeCCH----HHHHHHHHhCCCCCcEEEEcCCCCCC---CCCCCccEEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSP----HQLAKAKQKEPLKECTIIEGDAEDLP---FPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~----~~~~~a~~~~~~~~i~~~~~d~~~~~---~~~~~fD~v~ 183 (340)
+++.+||-+|+++|.....+.+-. |..-|++++.|+ ..+..|+++ +||..+..|+.... ..-+-.|+|+
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArhP~KYRmlVgmVDvIF 231 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARHPAKYRMLVGMVDVIF 231 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeeccCCCchheeeeeeeEEEEe
Confidence 689999999999999988888876 457899999987 456666654 77888888886521 2223467776
Q ss_pred ecCcccccC--CHHH-HHHHHHHhcccCcEEEEEc
Q 019479 184 SAGSIEYWP--DPQR-GIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 184 ~~~~l~~~~--d~~~-~l~~~~~~LkpgG~l~i~~ 215 (340)
+ ++. |..+ +.-++.-.||+||.+++.-
T Consensus 232 a-----Dvaqpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 232 A-----DVAQPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred c-----cCCCchhhhhhhhhhhhhhccCCeEEEEE
Confidence 5 333 3333 3446778899999998863
No 279
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.28 E-value=0.027 Score=52.49 Aligned_cols=100 Identities=27% Similarity=0.355 Sum_probs=70.9
Q ss_pred CCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcC-C-CC-CCCCC-CCccEEEecCc
Q 019479 113 RNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGD-A-ED-LPFPT-DYADRYVSAGS 187 (340)
Q Consensus 113 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d-~-~~-~~~~~-~~fD~v~~~~~ 187 (340)
++.+|+-+|||+ |.++..+++.++..+|+++|.++.-++.|++......+.....+ . .. ..... ..+|+++-...
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 444999999995 88888889988779999999999999999985432222211111 1 00 11222 36999996554
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
....+..+.+.++|||.+.+.....
T Consensus 248 ------~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 248 ------SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred ------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 2348899999999999999886543
No 280
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.14 Score=44.48 Aligned_cols=102 Identities=14% Similarity=0.092 Sum_probs=71.3
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCC----ceEEEEeCCHHHHHHHHHh--CCCCC--cEEEEcCCCC-CC-CCC-CCccE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDA----KNVTILDQSPHQLAKAKQK--EPLKE--CTIIEGDAED-LP-FPT-DYADR 181 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~----~~v~g~D~s~~~~~~a~~~--~~~~~--i~~~~~d~~~-~~-~~~-~~fD~ 181 (340)
.+...+|+|+|+..-+..+.+.+.. .+++.+|+|...++...+. ...+. +.-+++|.+. +. .+. +.==.
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 5789999999999888888777643 6899999999877655433 22344 4456777753 11 122 22234
Q ss_pred EEecCcccccCCH--HHHHHHHHHhcccCcEEEEE
Q 019479 182 YVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 182 v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~ 214 (340)
++...++..+... ..+|..+...|+||-.+++-
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 5667777777433 37899999999999988774
No 281
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=96.26 E-value=0.067 Score=47.59 Aligned_cols=139 Identities=14% Similarity=0.136 Sum_probs=88.6
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC------CCCcEEEEcCCCCCC--------CCCCCc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECTIIEGDAEDLP--------FPTDYA 179 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~------~~~i~~~~~d~~~~~--------~~~~~f 179 (340)
...|+.+|||--.-...+... ++.+++=+|. |++++.-++.+. ..+..++..|+.+.+ +....-
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP 159 (260)
T ss_pred CcEEEEeCCccccHHHhcCCC-CCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence 457999999976655554322 2477888888 667666555432 356788888986211 112223
Q ss_pred cEEEecCcccccCCHH--HHHHHHHHhcccCcEEEEEccCCCch-h----HhhHh-------hhHhhcCCCHHHHHHHHH
Q 019479 180 DRYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACVIGPVYPTF-W----LSRFF-------ADVWMLFPKEEEYIEWFQ 245 (340)
Q Consensus 180 D~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~l~i~~~~~~~~-~----~~~~~-------~~~~~~~~~~~~~~~~l~ 245 (340)
-++++-.++.+++... .+++.+.+...||+.+++........ . ..... ...+....+.+++.++|+
T Consensus 160 tl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 239 (260)
T TIGR00027 160 TAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLA 239 (260)
T ss_pred eeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHHHHHH
Confidence 4788888888987654 78999998888999888754322111 0 01100 011122357899999999
Q ss_pred HCCCcEEEE
Q 019479 246 KAGFKDVKL 254 (340)
Q Consensus 246 ~aGF~~v~~ 254 (340)
+.||+..+.
T Consensus 240 ~~Gw~~~~~ 248 (260)
T TIGR00027 240 ERGWRASEH 248 (260)
T ss_pred HCCCeeecC
Confidence 999998665
No 282
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.20 E-value=0.17 Score=45.49 Aligned_cols=129 Identities=17% Similarity=0.109 Sum_probs=79.2
Q ss_pred EEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCC--CCCccEEEecCccccc--
Q 019479 116 RVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFP--TDYADRYVSAGSIEYW-- 191 (340)
Q Consensus 116 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~--~~~fD~v~~~~~l~~~-- 191 (340)
+|+|+-||.|.+...+.+. +...+.++|+++.+++..+.+... .++++|+.++... ...+|+++...-...+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~---~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ 77 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPN---KLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSI 77 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCC---CCccCccccCchhhcCCCCCEEEeCCCChhhhH
Confidence 6899999999998888776 234578899999999999877542 2567788765422 3569999986544322
Q ss_pred -------CCHH-HHHHHHHH---hcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 192 -------PDPQ-RGIKEAYR---VLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 192 -------~d~~-~~l~~~~~---~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
.|.. ..+.++.+ .++|. +++.+.+..-.... .-...+.+.+.|++.||.+. ...+..
T Consensus 78 ag~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g~~~~~--------~~~~~~~i~~~l~~~GY~~~-~~~l~a 145 (275)
T cd00315 78 AGKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKGLLTHD--------NGNTLKVILNTLEELGYNVY-WKLLNA 145 (275)
T ss_pred HhhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcchhccC--------chHHHHHHHHHHHhCCcEEE-EEEEEH
Confidence 2332 23333333 34443 44554443211000 01135678888999999853 344433
No 283
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.14 E-value=0.027 Score=50.32 Aligned_cols=88 Identities=17% Similarity=0.192 Sum_probs=68.7
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCC--
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLP-- 173 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~-- 173 (340)
.+..+.++.+.. .++...+|.--|.|..+..+++.++. .+++|+|.++.+++.|+++.. ..++.++++++.++.
T Consensus 10 VLl~E~i~~L~~-~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~ 88 (314)
T COG0275 10 VLLNEVVELLAP-KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEA 88 (314)
T ss_pred hHHHHHHHhccc-CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHH
Confidence 355556666555 36789999999999999999999875 579999999999999999853 368999999886643
Q ss_pred ---CCCCCccEEEecCc
Q 019479 174 ---FPTDYADRYVSAGS 187 (340)
Q Consensus 174 ---~~~~~fD~v~~~~~ 187 (340)
...+++|.|+..-.
T Consensus 89 l~~~~i~~vDGiL~DLG 105 (314)
T COG0275 89 LKELGIGKVDGILLDLG 105 (314)
T ss_pred HHhcCCCceeEEEEecc
Confidence 23457888886433
No 284
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.14 E-value=0.02 Score=54.59 Aligned_cols=116 Identities=17% Similarity=0.223 Sum_probs=82.7
Q ss_pred chHHHHHHhccccCCCCC--CCEEEEEcCccchHHHHHHHhC----CCceEEEEeCCHHHHHHHHHhC---CCCCcEEEE
Q 019479 96 WTEDMRDEALEPADLFDR--NMRVVDVGGGTGFTTLGIVKHV----DAKNVTILDQSPHQLAKAKQKE---PLKECTIIE 166 (340)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~----~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~ 166 (340)
+.+.+...+++..+.-.. ...|+-+|+|.|-+.....+.. ...++++++-+|.++-..+.+. -..+++++.
T Consensus 348 Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~ 427 (649)
T KOG0822|consen 348 YQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIIS 427 (649)
T ss_pred HHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEe
Confidence 344455555555433222 5678999999998766554431 2468999999999887776542 135799999
Q ss_pred cCCCCCCCCCCCccEEEecCcccccCCH---HHHHHHHHHhcccCcEEE
Q 019479 167 GDAEDLPFPTDYADRYVSAGSIEYWPDP---QRGIKEAYRVLKIGGKAC 212 (340)
Q Consensus 167 ~d~~~~~~~~~~fD~v~~~~~l~~~~d~---~~~l~~~~~~LkpgG~l~ 212 (340)
.|+..++.+..+.|++++ ..|..+.|. .+.|..+.+.|||.|..+
T Consensus 428 ~DMR~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 428 SDMRKWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred ccccccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 999998855688998874 455555555 389999999999998764
No 285
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.05 E-value=0.057 Score=50.27 Aligned_cols=106 Identities=17% Similarity=0.162 Sum_probs=76.5
Q ss_pred CCCCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCC---CCCCCccEEE
Q 019479 111 FDRNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLP---FPTDYADRYV 183 (340)
Q Consensus 111 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~---~~~~~fD~v~ 183 (340)
++++.+|||..+-.|.=+..+|....+ +.|++.|.+..-+...+++ .+-.|..+...|..++| ++. +||-|+
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence 368999999999999888888776533 7899999999888888765 34466777778876654 444 799998
Q ss_pred ecCcccc------------cCCH----------HHHHHHHHHhcccCcEEEEEccC
Q 019479 184 SAGSIEY------------WPDP----------QRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 184 ~~~~l~~------------~~d~----------~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
+-.-..- +... .+.|..+...+++||+|+-.+..
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 6322111 1111 16777888999999999877543
No 286
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.02 E-value=0.055 Score=54.94 Aligned_cols=124 Identities=23% Similarity=0.263 Sum_probs=79.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhC-------C-----CceEEEEeCCH---HHHHHHHHhC--------------------
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV-------D-----AKNVTILDQSP---HQLAKAKQKE-------------------- 157 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~-------~-----~~~v~g~D~s~---~~~~~a~~~~-------------------- 157 (340)
+.-+|+|+|=|+|.+.....+.+ | ..+++.+|..| +.+..+.+..
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 45799999999999877666544 2 25889999643 3333322110
Q ss_pred ------CCC--CcEEEEcCCCC-CCCCCCCccEEEecCcccccCCH----HHHHHHHHHhcccCcEEEEEccCCCchhHh
Q 019479 158 ------PLK--ECTIIEGDAED-LPFPTDYADRYVSAGSIEYWPDP----QRGIKEAYRVLKIGGKACVIGPVYPTFWLS 224 (340)
Q Consensus 158 ------~~~--~i~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~d~----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~ 224 (340)
... ++++..+|+.+ ++.....+|++++.. +.--.++ ..++++++++++|||.+.--.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~-FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t--------- 206 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDG-FAPAKNPDMWSPNLFNALARLARPGATLATFT--------- 206 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCC-CCCccChhhccHHHHHHHHHHhCCCCEEEEee---------
Confidence 011 23456678754 232235699999742 2222334 389999999999999986332
Q ss_pred hHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 225 RFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
....++.-|.++||++.+....
T Consensus 207 -----------~a~~vr~~l~~~GF~v~~~~~~ 228 (662)
T PRK01747 207 -----------SAGFVRRGLQEAGFTVRKVKGF 228 (662)
T ss_pred -----------hHHHHHHHHHHcCCeeeecCCC
Confidence 3456778899999987665444
No 287
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=95.86 E-value=0.24 Score=40.84 Aligned_cols=133 Identities=21% Similarity=0.091 Sum_probs=85.0
Q ss_pred EEcCccchHHHHHHHhCC-CceEEEEeC--CHHHHHHHH---Hh---CCCCCcEE-EEcCCCCCC----CCCCCccEEEe
Q 019479 119 DVGGGTGFTTLGIVKHVD-AKNVTILDQ--SPHQLAKAK---QK---EPLKECTI-IEGDAEDLP----FPTDYADRYVS 184 (340)
Q Consensus 119 DiGcG~G~~~~~l~~~~~-~~~v~g~D~--s~~~~~~a~---~~---~~~~~i~~-~~~d~~~~~----~~~~~fD~v~~ 184 (340)
=||=|.=.++..+++.++ +..+++.-+ ..+..+... ++ +...++++ ...|+..+. .....||.|+-
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 367777788889999876 556666544 333333322 11 22234443 345665543 35678999998
Q ss_pred cCcccc--cCC----H-------HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcE
Q 019479 185 AGSIEY--WPD----P-------QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKD 251 (340)
Q Consensus 185 ~~~l~~--~~d----~-------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 251 (340)
++-..- ..+ . ..+++.+.++|+++|.+.|+-..... ++.-++.++.+++||..
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p--------------y~~W~i~~lA~~~gl~l 147 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP--------------YDSWNIEELAAEAGLVL 147 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC--------------CccccHHHHHHhcCCEE
Confidence 754332 111 1 16788999999999999888543322 24456778999999999
Q ss_pred EEEEEeCCcccccc
Q 019479 252 VKLKRIGPKWYRGV 265 (340)
Q Consensus 252 v~~~~~~~~~~~~~ 265 (340)
++...+....|++.
T Consensus 148 ~~~~~F~~~~ypgY 161 (166)
T PF10354_consen 148 VRKVPFDPSDYPGY 161 (166)
T ss_pred EEEecCCHHHCCCc
Confidence 99998877666554
No 288
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.82 E-value=0.035 Score=48.11 Aligned_cols=74 Identities=26% Similarity=0.266 Sum_probs=45.8
Q ss_pred CEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHH---h----CCC-----CCcEEEEcCCCC-CCCCCCCccE
Q 019479 115 MRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ---K----EPL-----KECTIIEGDAED-LPFPTDYADR 181 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~---~----~~~-----~~i~~~~~d~~~-~~~~~~~fD~ 181 (340)
.+|||.-+|-|..+..++.. |++|+++|-||.+....+. + ... .+++++.+|..+ +..++++||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 48999999999999999875 7899999999976555442 1 111 368999999966 5556789999
Q ss_pred EEecCcccc
Q 019479 182 YVSAGSIEY 190 (340)
Q Consensus 182 v~~~~~l~~ 190 (340)
|++--++.+
T Consensus 155 VY~DPMFp~ 163 (234)
T PF04445_consen 155 VYFDPMFPE 163 (234)
T ss_dssp EEE--S---
T ss_pred EEECCCCCC
Confidence 999877765
No 289
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=95.65 E-value=0.27 Score=45.23 Aligned_cols=107 Identities=20% Similarity=0.238 Sum_probs=71.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCC----ceEEEEeCCHHHHHHHHH---hCCCCCcEEEEcCCCCCC---------CC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDA----KNVTILDQSPHQLAKAKQ---KEPLKECTIIEGDAEDLP---------FP 175 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~----~~v~g~D~s~~~~~~a~~---~~~~~~i~~~~~d~~~~~---------~~ 175 (340)
+++.+|||.++-.|.=+..+.+..-. ..|++-|.++.-+..... +...+++.+...|+...| ..
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE 233 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence 68999999999999999888887422 379999998866555543 344455555555554333 12
Q ss_pred CCCccEEEecC------cccccCCH-----------------HHHHHHHHHhcccCcEEEEEccCC
Q 019479 176 TDYADRYVSAG------SIEYWPDP-----------------QRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 176 ~~~fD~v~~~~------~l~~~~d~-----------------~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
...||-|++.- ++.+.++. -.+|++..++||+||+|+-.+...
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 34589888631 11111111 167889999999999998876543
No 290
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=95.61 E-value=0.0084 Score=48.34 Aligned_cols=132 Identities=17% Similarity=0.040 Sum_probs=77.9
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCc-EEEEcCCCC-CCCCCCCccEEEecCccccc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC-TIIEGDAED-LPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i-~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~ 191 (340)
+++++-+|... -|...++-.++..++.-+|.++--++.- .. +++ ++...|+.. +....++||.+.+.++++|.
T Consensus 2 ~~~g~V~GS~~-PwvEv~aL~~GA~~iltveyn~L~i~~~---~~-dr~ssi~p~df~~~~~~y~~~fD~~as~~siEh~ 76 (177)
T PF03269_consen 2 GKSGLVVGSMQ-PWVEVMALQHGAAKILTVEYNKLEIQEE---FR-DRLSSILPVDFAKNWQKYAGSFDFAASFSSIEHF 76 (177)
T ss_pred CceEEEEecCC-chhhHHHHHcCCceEEEEeecccccCcc---cc-cccccccHHHHHHHHHHhhccchhhheechhccc
Confidence 56788888884 4555556665667888888755221111 00 111 222333321 22345679999999999887
Q ss_pred C--------CH---HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 192 P--------DP---QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 192 ~--------d~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
- |+ .+.+.++.++|||||.|++..|.-.+...-. .++.+....+.-++ .||+.+.....
T Consensus 77 GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fN-----ahRiYg~~rL~mm~--~gfe~i~tfs~ 146 (177)
T PF03269_consen 77 GLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFN-----AHRIYGPIRLAMMF--YGFEWIDTFSG 146 (177)
T ss_pred cccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEe-----cceeecHhHHHHHh--CCcEEEeeecc
Confidence 2 22 2788999999999999999877654211000 01122334443333 68888776544
No 291
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=95.56 E-value=0.028 Score=50.58 Aligned_cols=105 Identities=12% Similarity=0.162 Sum_probs=70.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhC--------------------CCceEEEEeCCH--HHHHHHHHhCCC-----------
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV--------------------DAKNVTILDQSP--HQLAKAKQKEPL----------- 159 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~--------------------~~~~v~g~D~s~--~~~~~a~~~~~~----------- 159 (340)
+..+||.||+|.|.-...++..+ +...++.+|+.+ ..++........
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 34799999999987666666554 114899999865 344443322111
Q ss_pred ---------CCcEEEEcCCCCCCCC-------CCCccEEEecCccccc-----CCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 160 ---------KECTIIEGDAEDLPFP-------TDYADRYVSAGSIEYW-----PDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 160 ---------~~i~~~~~d~~~~~~~-------~~~fD~v~~~~~l~~~-----~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
=+++|.+.|+..+..+ .+..|+|.+.+++..+ ..--++|.++-..++||..|+|++..
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 1378899999665421 1246888877666533 23348899999999999999998743
No 292
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=95.46 E-value=0.019 Score=44.96 Aligned_cols=86 Identities=22% Similarity=0.324 Sum_probs=61.1
Q ss_pred ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC-----C-CCCCCccEEEecCcccccCCHHH
Q 019479 123 GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL-----P-FPTDYADRYVSAGSIEYWPDPQR 196 (340)
Q Consensus 123 G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~-----~-~~~~~fD~v~~~~~l~~~~d~~~ 196 (340)
|.|..+..+++..+ .+|+++|.++.-.+.+++.... .++..+-.++ . .....+|+|+-.-. ...
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~---~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------~~~ 70 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGAD---HVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------SGD 70 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTES---EEEETTTSSHHHHHHHHTTTSSEEEEEESSS------SHH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhccc---ccccccccccccccccccccccceEEEEecC------cHH
Confidence 46889999999875 9999999999999999875311 1222221110 1 23347999986432 246
Q ss_pred HHHHHHHhcccCcEEEEEccCC
Q 019479 197 GIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 197 ~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
.++....+|+++|++++.....
T Consensus 71 ~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 71 TLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHhccCCEEEEEEccC
Confidence 8899999999999999987654
No 293
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.46 E-value=0.08 Score=51.45 Aligned_cols=97 Identities=18% Similarity=0.279 Sum_probs=66.9
Q ss_pred CCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC--------------------
Q 019479 113 RNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-------------------- 171 (340)
Q Consensus 113 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-------------------- 171 (340)
++.+|+-+|+|. |..+..+++.. +..|+++|.++...+.+++. . .+++..|..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l-G---a~~v~v~~~e~g~~~~gYa~~~s~~~~~~~ 237 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM-G---AEFLELDFKEEGGSGDGYAKVMSEEFIAAE 237 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-C---CeEEeccccccccccccceeecCHHHHHHH
Confidence 578999999995 57777777775 67899999999988888763 2 2232222211
Q ss_pred ---CCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEE
Q 019479 172 ---LPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 172 ---~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
++-.-..+|+||..-.+..-+.+.-+.++..+.+|||+.++-.
T Consensus 238 ~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 238 MELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 1111245999987665555455556788899999999987643
No 294
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.29 E-value=0.072 Score=47.17 Aligned_cols=74 Identities=19% Similarity=0.351 Sum_probs=51.0
Q ss_pred CCEEEEEcCccchHHHHHHHhCC--------CceEEEEeCCHHHHHHHHHhCCC---------CCcEEEEcCCCCCCCCC
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVD--------AKNVTILDQSPHQLAKAKQKEPL---------KECTIIEGDAEDLPFPT 176 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~--------~~~v~g~D~s~~~~~~a~~~~~~---------~~i~~~~~d~~~~~~~~ 176 (340)
+.+|+|+|+|+|.++..+++.+. ..+++.+|.|+.+.+.-++++.. .++.+ ..++.+.|
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 47999999999999999988653 35899999999999888887543 12333 33443333
Q ss_pred CCccEEEecCcccccC
Q 019479 177 DYADRYVSAGSIEYWP 192 (340)
Q Consensus 177 ~~fD~v~~~~~l~~~~ 192 (340)
..-+|+++.++..++
T Consensus 95 -~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 95 -FPGFIIANELFDALP 109 (252)
T ss_dssp -CCEEEEEESSGGGS-
T ss_pred -CCEEEEEeeehhcCc
Confidence 346788888887775
No 295
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.03 E-value=0.16 Score=47.17 Aligned_cols=97 Identities=13% Similarity=0.083 Sum_probs=62.1
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeC---CHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQ---SPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~---s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
.++.+||-+|+| .|..+..+++.. +.+|++++. ++.-.+.+++... ..+.....+..+. ...+.+|+|+-...
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~Ga-~~v~~~~~~~~~~-~~~~~~d~vid~~g 247 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEELGA-TYVNSSKTPVAEV-KLVGEFDLIIEATG 247 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCC-EEecCCccchhhh-hhcCCCCEEEECcC
Confidence 367899999987 477778888875 668999986 6777777775321 1111111111110 11245898886432
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
....+.+..+.|++||++++....
T Consensus 248 ------~~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 248 ------VPPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred ------CHHHHHHHHHHccCCcEEEEEecC
Confidence 123678889999999999887543
No 296
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.01 E-value=0.086 Score=49.45 Aligned_cols=100 Identities=22% Similarity=0.236 Sum_probs=71.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhCC----CC-CcEEEEcCCCCC-CCCCCCccEEEec
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP----LK-ECTIIEGDAEDL-PFPTDYADRYVSA 185 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~----~~-~i~~~~~d~~~~-~~~~~~fD~v~~~ 185 (340)
.+.+|||.=+|+|.=++..+...++ .+|+.-|+|+++++.++++.. .. .+++.+.|+..+ ......||+|=+.
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 3569999999999999999888654 689999999999999998732 12 477788888553 2246779998752
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.+-.+..+|..+.+.++.||.|.++..
T Consensus 129 ----PfGSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 129 ----PFGSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp -----SS--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred ----CCCCccHhHHHHHHHhhcCCEEEEecc
Confidence 334566899999999999999999843
No 297
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.98 E-value=0.082 Score=48.54 Aligned_cols=98 Identities=23% Similarity=0.290 Sum_probs=75.2
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCC---CcEEEEcCCCCCC-CCCCCccEEEecCccc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---ECTIIEGDAEDLP-FPTDYADRYVSAGSIE 189 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~---~i~~~~~d~~~~~-~~~~~fD~v~~~~~l~ 189 (340)
..+|+|.=+|+|.=++.++...+..+|+.-|+||.+++.++++...+ +...+..|+..+- .....||+|=. .
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi----D 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI----D 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec----C
Confidence 68999999999999999999876669999999999999999884433 4555556664432 12356887753 2
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
-+-.+.-++..+.+.++.||.|.++-
T Consensus 129 PFGSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 129 PFGSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CCCCCchHHHHHHHHhhcCCEEEEEe
Confidence 33355678899999999999998873
No 298
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=94.88 E-value=0.027 Score=49.84 Aligned_cols=105 Identities=18% Similarity=0.105 Sum_probs=65.8
Q ss_pred CCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh-------CC---CCC---cEEEEcCCCCCCC-
Q 019479 109 DLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK-------EP---LKE---CTIIEGDAEDLPF- 174 (340)
Q Consensus 109 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~-------~~---~~~---i~~~~~d~~~~~~- 174 (340)
...-.+++|||+|||+|.-.+..... ....++..|.+...++...-- .. .++ ......+..++-+
T Consensus 112 ~~~~~~k~vLELgCg~~Lp~i~~~~~-~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~ 190 (282)
T KOG2920|consen 112 QMSFSGKRVLELGCGAALPGIFAFVK-GAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFN 190 (282)
T ss_pred heEecCceeEecCCcccccchhhhhh-ccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhh
Confidence 33347899999999999998887776 237899999988877432210 00 011 1111111111111
Q ss_pred CCC--CccEEEecCcccccCCHHHH-HHHHHHhcccCcEEEEE
Q 019479 175 PTD--YADRYVSAGSIEYWPDPQRG-IKEAYRVLKIGGKACVI 214 (340)
Q Consensus 175 ~~~--~fD~v~~~~~l~~~~d~~~~-l~~~~~~LkpgG~l~i~ 214 (340)
..+ .||+|.++.++...+..+.. .......+++.|.+++.
T Consensus 191 ~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 191 HTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred hccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhh
Confidence 112 68999999888887776666 55666677888887654
No 299
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.82 E-value=0.024 Score=42.49 Aligned_cols=31 Identities=19% Similarity=0.182 Sum_probs=27.4
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQ 145 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~ 145 (340)
+....+|||||.|.+..-+... |..-.|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 4567899999999999888887 889999998
No 300
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.77 E-value=0.19 Score=46.58 Aligned_cols=94 Identities=15% Similarity=0.167 Sum_probs=61.3
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
.++.+||-+||| .|..+..++++ .++.+|+++|.+++-++.+++ ... .....+. . ....+|+|+-.-.-
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~---~~~~~~~---~-~~~g~d~viD~~G~- 232 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE---TYLIDDI---P-EDLAVDHAFECVGG- 232 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc---eeehhhh---h-hccCCcEEEECCCC-
Confidence 468899999986 45566666665 455789999999988888874 211 1111111 1 11248988843221
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
......+....+.|++||++++...
T Consensus 233 --~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 233 --RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred --CccHHHHHHHHHhCcCCcEEEEEee
Confidence 0123578889999999999988753
No 301
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.65 E-value=0.21 Score=45.29 Aligned_cols=140 Identities=12% Similarity=0.152 Sum_probs=91.2
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCC------CcEEEEcCCCCCC----CCCCCc----
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK------ECTIIEGDAEDLP----FPTDYA---- 179 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~------~i~~~~~d~~~~~----~~~~~f---- 179 (340)
...|+-+|||--.-+..+-.. ++.+|+-+|. |+.++.-++.+... ..+++..|+.+.. +....|
T Consensus 93 ~~qvViLgaGLDTRayRl~~~-~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~ 170 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLDWP-KGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSR 170 (297)
T ss_pred ccEEEEeccccccceeecCCC-CCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCC
Confidence 478999999854333222211 2478888998 88887776664321 5889999997322 232223
Q ss_pred -cEEEecCcccccCCH--HHHHHHHHHhcccCcEEEEEccCCCchhHhh-------Hh-------hhHhhcCCCHHHHHH
Q 019479 180 -DRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACVIGPVYPTFWLSR-------FF-------ADVWMLFPKEEEYIE 242 (340)
Q Consensus 180 -D~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-------~~-------~~~~~~~~~~~~~~~ 242 (340)
=++++-+++.+++.. +++++.|.....||..++............. .. ...+....+..++..
T Consensus 171 pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~ 250 (297)
T COG3315 171 PTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIET 250 (297)
T ss_pred CeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHHH
Confidence 478888999999755 3899999999999988877754222111110 00 112222346899999
Q ss_pred HHHHCCCcEEEEE
Q 019479 243 WFQKAGFKDVKLK 255 (340)
Q Consensus 243 ~l~~aGF~~v~~~ 255 (340)
++.+.||..+...
T Consensus 251 ~l~~~g~~~~~~~ 263 (297)
T COG3315 251 WLAERGWRSTLNR 263 (297)
T ss_pred HHHhcCEEEEecC
Confidence 9999999987664
No 302
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=94.64 E-value=0.55 Score=45.83 Aligned_cols=105 Identities=18% Similarity=0.159 Sum_probs=71.3
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCC----CceEEEEeCCHHHHHHHHHhCCCCC----cEEEEcCCCCCC-C----CCCC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVD----AKNVTILDQSPHQLAKAKQKEPLKE----CTIIEGDAEDLP-F----PTDY 178 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~----~~~v~g~D~s~~~~~~a~~~~~~~~----i~~~~~d~~~~~-~----~~~~ 178 (340)
.+..+|.|..||+|.+.....+.+. ...++|.|.++.....++-+....+ +....+|...-| . ..+.
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~ 264 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGK 264 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccc
Confidence 4566999999999999887776652 2679999999999999997632222 334444443322 2 3366
Q ss_pred ccEEEecCccc---ccC---------------------CH-HHHHHHHHHhcccCcEEEEEcc
Q 019479 179 ADRYVSAGSIE---YWP---------------------DP-QRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 179 fD~v~~~~~l~---~~~---------------------d~-~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
||+|+++--+. +.. .. ...+.++...|+|||+..++-+
T Consensus 265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 99999864332 110 01 2678999999999987776644
No 303
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=94.59 E-value=0.67 Score=42.37 Aligned_cols=94 Identities=21% Similarity=0.239 Sum_probs=64.5
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC------CCCCCCccEEEe
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL------PFPTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~------~~~~~~fD~v~~ 184 (340)
.++.+||..|+| .|..+..+++.. +.+|++++.++...+.+++.. ++.+..+-+.. ......+|+|+.
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~D~vid 238 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKELG----ADEVLNSLDDSPKDKKAAGLGGGFDVIFD 238 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhC----CCEEEcCCCcCHHHHHHHhcCCCceEEEE
Confidence 567899998876 478888888875 678999999999988886532 11221111110 123456898885
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+.. ....++++.+.|+++|+++....
T Consensus 239 ~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 239 FVG------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CCC------CHHHHHHHHHHhhcCCEEEEECC
Confidence 322 13578889999999999987753
No 304
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.51 E-value=0.26 Score=39.23 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=73.4
Q ss_pred hHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh----CCCCCcEEEEcCCCCC
Q 019479 97 TEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----EPLKECTIIEGDAEDL 172 (340)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~----~~~~~i~~~~~d~~~~ 172 (340)
+.+..+..+..+.- ++..+.+|+|+|.|......++. .-...+|+++++-.+..++-+ .-.....|..-|+...
T Consensus 57 tteQv~nVLSll~~-n~~GklvDlGSGDGRiVlaaar~-g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 57 TTEQVENVLSLLRG-NPKGKLVDLGSGDGRIVLAAARC-GLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV 134 (199)
T ss_pred cHHHHHHHHHHccC-CCCCcEEeccCCCceeehhhhhh-CCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc
Confidence 33444555555543 45568999999999999888887 236889999999988887744 1124577888888666
Q ss_pred CCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCC
Q 019479 173 PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYP 219 (340)
Q Consensus 173 ~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~ 219 (340)
.+.+ |..|+.+.+-.-++|.+ .++..-|..|.+++-.-+..+
T Consensus 135 dl~d--y~~vviFgaes~m~dLe---~KL~~E~p~nt~vvacRFPLP 176 (199)
T KOG4058|consen 135 DLRD--YRNVVIFGAESVMPDLE---DKLRTELPANTRVVACRFPLP 176 (199)
T ss_pred cccc--cceEEEeehHHHHhhhH---HHHHhhCcCCCeEEEEecCCC
Confidence 5544 44444444433344433 344445566777765544333
No 305
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.50 E-value=0.76 Score=40.27 Aligned_cols=98 Identities=26% Similarity=0.299 Sum_probs=62.7
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-C-CCCCCCccEEEecCcc
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-L-PFPTDYADRYVSAGSI 188 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~-~~~~~~fD~v~~~~~l 188 (340)
.++.+||..|+|. |..+..+++.. +.+|++++.++...+.+++.....-+.....+... . ....+.+|+++....-
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~ 211 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGG 211 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCC
Confidence 4788999999985 77777777775 68999999998888887654211001100000000 0 1123569999864321
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
...+..+.+.|+++|+++....
T Consensus 212 ------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 212 ------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred ------HHHHHHHHHhcccCCEEEEEcc
Confidence 1456778889999999987754
No 306
>PRK13699 putative methylase; Provisional
Probab=94.47 E-value=0.11 Score=45.27 Aligned_cols=78 Identities=22% Similarity=0.253 Sum_probs=48.5
Q ss_pred EEEEcCCCCC--CCCCCCccEEEecCccc----c-----c--C---CH-HHHHHHHHHhcccCcEEEEEccCCCchhHhh
Q 019479 163 TIIEGDAEDL--PFPTDYADRYVSAGSIE----Y-----W--P---DP-QRGIKEAYRVLKIGGKACVIGPVYPTFWLSR 225 (340)
Q Consensus 163 ~~~~~d~~~~--~~~~~~fD~v~~~~~l~----~-----~--~---d~-~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~ 225 (340)
+++++|..+. .++++++|+|+..--.. . + . ++ ...+.+++|+|||||.+++.....
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~------- 75 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN------- 75 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc-------
Confidence 4566666442 36677788877652111 0 0 0 11 368899999999999887643211
Q ss_pred HhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEe
Q 019479 226 FFADVWMLFPKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
....+...++++||...+....
T Consensus 76 ----------~~~~~~~al~~~GF~l~~~IiW 97 (227)
T PRK13699 76 ----------RVDRFMAAWKNAGFSVVGHLVF 97 (227)
T ss_pred ----------cHHHHHHHHHHCCCEEeeEEEE
Confidence 1234567889999997665444
No 307
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.43 E-value=0.27 Score=44.84 Aligned_cols=88 Identities=20% Similarity=0.207 Sum_probs=58.9
Q ss_pred CCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 113 RNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 113 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
++.+||-+||| .|.++..+++..+...|+++|.++..++.+.+.. + .|..+. ....+|+|+-...
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~------~--i~~~~~--~~~g~Dvvid~~G---- 209 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE------V--LDPEKD--PRRDYRAIYDASG---- 209 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc------c--cChhhc--cCCCCCEEEECCC----
Confidence 56789989986 5778888888864445778899887777665321 1 111111 2345898885432
Q ss_pred CCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 192 PDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
....+..+.+.|+++|++++...
T Consensus 210 --~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 --DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred --CHHHHHHHHHhhhcCcEEEEEee
Confidence 23467888999999999988753
No 308
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.32 E-value=0.88 Score=34.62 Aligned_cols=102 Identities=23% Similarity=0.243 Sum_probs=63.1
Q ss_pred CccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----CCCCCccEEEecCcccccCCHH
Q 019479 122 GGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----FPTDYADRYVSAGSIEYWPDPQ 195 (340)
Q Consensus 122 cG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~~~l~~~~d~~ 195 (340)
||.|..+..+++.+ .+.+|+.+|.+++.++.+++. .+.++.+|..+.. ..-..+|.|++.. ++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~-----~~d~ 74 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----GVEVIYGDATDPEVLERAGIEKADAVVILT-----DDDE 74 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TSEEEES-TTSHHHHHHTTGGCESEEEEES-----SSHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----ccccccccchhhhHHhhcCccccCEEEEcc-----CCHH
Confidence 44456666665543 245899999999999998864 3779999997632 2334678777642 2333
Q ss_pred --HHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEE
Q 019479 196 --RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDV 252 (340)
Q Consensus 196 --~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v 252 (340)
..+....+.+.|..+++.... ..+..+.|+++|...+
T Consensus 75 ~n~~~~~~~r~~~~~~~ii~~~~--------------------~~~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 75 ENLLIALLARELNPDIRIIARVN--------------------DPENAELLRQAGADHV 113 (116)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEES--------------------SHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEEC--------------------CHHHHHHHHHCCcCEE
Confidence 234455566777777776532 2344567777777643
No 309
>PRK11524 putative methyltransferase; Provisional
Probab=94.21 E-value=0.15 Score=46.01 Aligned_cols=60 Identities=8% Similarity=0.006 Sum_probs=48.6
Q ss_pred CchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC
Q 019479 95 HWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP 158 (340)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~ 158 (340)
..-..+.+.++.... .+|..|||.=||+|..+....+. +.+.+|+|++++.++.|++|+.
T Consensus 192 ~kP~~L~erlI~~~S--~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 192 QKPEALLKRIILASS--NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred cChHHHHHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHH
Confidence 334556666665543 48999999999999999987776 8899999999999999998853
No 310
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=94.13 E-value=0.21 Score=41.61 Aligned_cols=106 Identities=18% Similarity=0.179 Sum_probs=75.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhC----CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-------CCCCCccE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV----DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-------FPTDYADR 181 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~----~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-------~~~~~fD~ 181 (340)
++..|+|+|.-.|..++.++... ...+|+++|++-...+.+..+ .+++.|+.++-.+.. ...+.--+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e--~p~i~f~egss~dpai~eqi~~~~~~y~kI 146 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE--VPDILFIEGSSTDPAIAEQIRRLKNEYPKI 146 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--CCCeEEEeCCCCCHHHHHHHHHHhcCCCcE
Confidence 67889999999888777766642 127999999987665544332 378999999876532 12222245
Q ss_pred EEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCc
Q 019479 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPT 220 (340)
Q Consensus 182 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~ 220 (340)
.++-.+-|+....-+.|+-..+.|.-|-++++.+.+..+
T Consensus 147 fvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 147 FVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred EEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccC
Confidence 556666776666667788888999999999998766554
No 311
>PTZ00357 methyltransferase; Provisional
Probab=94.12 E-value=0.32 Score=48.33 Aligned_cols=95 Identities=15% Similarity=0.150 Sum_probs=65.0
Q ss_pred CEEEEEcCccchHHHHHHHhCC----CceEEEEeCCHHHHHHHHHh----CCC--------CCcEEEEcCCCCCCCCC--
Q 019479 115 MRVVDVGGGTGFTTLGIVKHVD----AKNVTILDQSPHQLAKAKQK----EPL--------KECTIIEGDAEDLPFPT-- 176 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~~----~~~v~g~D~s~~~~~~a~~~----~~~--------~~i~~~~~d~~~~~~~~-- 176 (340)
..|+-+|+|.|-+.....+... ..++++||-++..+.....+ ..+ ..|+++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 4699999999988766555431 36899999996643333222 122 23899999998864321
Q ss_pred ---------CCccEEEecCcccccCCHH---HHHHHHHHhccc----CcE
Q 019479 177 ---------DYADRYVSAGSIEYWPDPQ---RGIKEAYRVLKI----GGK 210 (340)
Q Consensus 177 ---------~~fD~v~~~~~l~~~~d~~---~~l~~~~~~Lkp----gG~ 210 (340)
+++|+||+ ..|..+-|.+ +.|..+.+.||+ +|.
T Consensus 782 ~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 36998885 4455554553 889999999987 776
No 312
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=94.04 E-value=0.59 Score=43.01 Aligned_cols=91 Identities=19% Similarity=0.138 Sum_probs=62.0
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
+++.+||-.|+| .|..+..+++.. +.+|++++.+++-.+.+++.-... + .|..+. ..+.+|+++.....
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~Ga~~---v--i~~~~~--~~~~~d~~i~~~~~-- 233 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALALGAAS---A--GGAYDT--PPEPLDAAILFAPA-- 233 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHhCCce---e--cccccc--CcccceEEEECCCc--
Confidence 578899999975 456677777775 678999999999888888753211 1 111111 12357877643322
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
...+....+.|++||++++...
T Consensus 234 ----~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 ----GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ----HHHHHHHHHhhCCCcEEEEEec
Confidence 2468889999999999988764
No 313
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.02 E-value=0.14 Score=43.97 Aligned_cols=57 Identities=12% Similarity=0.140 Sum_probs=42.1
Q ss_pred CchHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q 019479 95 HWTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ 155 (340)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~ 155 (340)
.....+.+.++...- .++..|||.=||+|..+....+. +.+.+|+|+++..++.|++
T Consensus 175 ~kP~~l~~~lI~~~t--~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 175 QKPVELIERLIKAST--NPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -S-HHHHHHHHHHHS---TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhh--ccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 334456666665543 47899999999999999988777 8899999999999999874
No 314
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=93.75 E-value=0.46 Score=43.65 Aligned_cols=93 Identities=18% Similarity=0.253 Sum_probs=61.0
Q ss_pred CCCEEEEEcCcc-chHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCcEEEEcC---CCCCCCCCCCccEEEecCc
Q 019479 113 RNMRVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECTIIEGD---AEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 113 ~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d---~~~~~~~~~~fD~v~~~~~ 187 (340)
++.+||..|||. |..+..+++.. +. .+++++.++...+.+++... . .++..+ +.........+|+++....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~-G~~~v~~~~~s~~~~~~~~~~g~-~--~vi~~~~~~~~~~~~~~~~vd~vld~~g 240 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA-GAAEIVATDLADAPLAVARAMGA-D--ETVNLARDPLAAYAADKGDFDVVFEASG 240 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHcCC-C--EEEcCCchhhhhhhccCCCccEEEECCC
Confidence 678899888875 67777778775 55 79999999988887765321 1 111111 1111112234899986432
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
. ...++.+.+.|+++|+++...
T Consensus 241 ~------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 241 A------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred C------HHHHHHHHHHHhcCCEEEEEe
Confidence 1 235788899999999998764
No 315
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.63 E-value=0.083 Score=50.22 Aligned_cols=101 Identities=20% Similarity=0.315 Sum_probs=77.1
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhCCCC----CcEEEEcCCCCC----CCCCCCccEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPLK----ECTIIEGDAEDL----PFPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~----~i~~~~~d~~~~----~~~~~~fD~v 182 (340)
.++.+|||.=|++|.-++..+...|+ .+|++.|.++..++..+++.... .++....|+..+ +-....||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 36789999999999999999999887 58999999999999888774433 244556666331 2335679988
Q ss_pred EecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 183 VSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 183 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
-+. ..-.+..+|+.+.+.++.||.|.++..
T Consensus 188 DLD----PyGs~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 188 DLD----PYGSPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred ecC----CCCCccHHHHHHHHHhhcCCEEEEEec
Confidence 752 223445799999999999999998743
No 316
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.54 E-value=0.21 Score=44.89 Aligned_cols=99 Identities=21% Similarity=0.200 Sum_probs=72.8
Q ss_pred CCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 113 RNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 113 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.+.+|.-||.| .|..+..++--. +++|+.+|+|..-+......+. .++.....+...+...-.++|++|..-.+---
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~-~rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFG-GRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhC-ceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 34577789988 477777777664 7899999999888777765544 34566655554443344678999976666566
Q ss_pred CCHHHHHHHHHHhcccCcEEEE
Q 019479 192 PDPQRGIKEAYRVLKIGGKACV 213 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i 213 (340)
..|.-+.++....||||+.++=
T Consensus 245 kaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEE
Confidence 7778889999999999999864
No 317
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=93.53 E-value=0.27 Score=46.05 Aligned_cols=98 Identities=18% Similarity=0.219 Sum_probs=61.9
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCC-CC-CCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECTIIEGDAE-DL-PFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~-~~-~~~~~~fD~v~~~~~ 187 (340)
+++.+||-.|+| .|..+..+++.. +. +|+++|.++...+.+++.-...-+.....|.. .+ ....+.+|+|+-...
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G 268 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAG 268 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCC
Confidence 467889989986 466777777775 55 79999999999998875422100111111110 00 011235898885321
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
....+....+.|+++|++++...
T Consensus 269 ------~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 269 ------SVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred ------ChHHHHHHHHHHhcCCEEEEEcc
Confidence 12467888899999999988754
No 318
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=93.53 E-value=0.34 Score=45.95 Aligned_cols=107 Identities=13% Similarity=0.037 Sum_probs=68.8
Q ss_pred CCCEEEEEcCccc--hHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--CCcEE-EEc-CCC--CCCCC-CCCccEEE
Q 019479 113 RNMRVVDVGGGTG--FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--KECTI-IEG-DAE--DLPFP-TDYADRYV 183 (340)
Q Consensus 113 ~~~~vLDiGcG~G--~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~i~~-~~~-d~~--~~~~~-~~~fD~v~ 183 (340)
.+..+.|+|.|.| .++......--...++.||.|..|.......... .+-.. +.. -+. .+|.. .+.||+|+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 5667888888765 4555544442246799999999999888765432 11111 111 111 13433 34599999
Q ss_pred ecCcccccCCHH----HHHHHHHHhcccCcEEEEEccCCC
Q 019479 184 SAGSIEYWPDPQ----RGIKEAYRVLKIGGKACVIGPVYP 219 (340)
Q Consensus 184 ~~~~l~~~~d~~----~~l~~~~~~LkpgG~l~i~~~~~~ 219 (340)
+.+.++++.+.. ..-...++..++|+.+++++....
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 999999987664 223345556789999999876543
No 319
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=93.38 E-value=0.37 Score=44.87 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=62.1
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCC-cEEEEcCCCC-C-C-CCCCCccEEEec
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKE-CTIIEGDAED-L-P-FPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~-i~~~~~d~~~-~-~-~~~~~fD~v~~~ 185 (340)
.++.+||-.|+| .|..+..+++.. +. +|+++|.++...+.+++... .. +.....+..+ + . .....+|+|+-.
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~~~Ga-~~~i~~~~~~~~~~i~~~~~~~g~d~vid~ 252 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWAREFGA-THTVNSSGTDPVEAIRALTGGFGADVVIDA 252 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCC-ceEEcCCCcCHHHHHHHHhCCCCCCEEEEC
Confidence 478899999986 366777788876 55 59999999999999875422 11 1111111100 0 0 122358988843
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.. . ...++...+.+++||++++...
T Consensus 253 ~g-----~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 253 VG-----R-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CC-----C-HHHHHHHHHHhccCCEEEEECC
Confidence 22 1 2467778899999999988764
No 320
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=93.28 E-value=0.065 Score=41.84 Aligned_cols=76 Identities=26% Similarity=0.315 Sum_probs=49.7
Q ss_pred cEEEEcCCCC-CCCCCCCccEEEecCcccccCCH----HHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCC
Q 019479 162 CTIIEGDAED-LPFPTDYADRYVSAGSIEYWPDP----QRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPK 236 (340)
Q Consensus 162 i~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~d~----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 236 (340)
+++..+|+.+ ++.-...||+|+... +..-.++ ..++++++++++|||.+..-. .
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys--------------------~ 91 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLATYS--------------------S 91 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES----------------------
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEEee--------------------c
Confidence 5567888854 332337799999754 3333344 389999999999999874321 2
Q ss_pred HHHHHHHHHHCCCcEEEEEEeC
Q 019479 237 EEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 237 ~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
...++..|.++||.+.+....+
T Consensus 92 a~~Vr~~L~~aGF~v~~~~g~g 113 (124)
T PF05430_consen 92 AGAVRRALQQAGFEVEKVPGFG 113 (124)
T ss_dssp BHHHHHHHHHCTEEEEEEE-ST
T ss_pred hHHHHHHHHHcCCEEEEcCCCC
Confidence 3567889999999988777765
No 321
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.19 E-value=0.19 Score=46.30 Aligned_cols=44 Identities=25% Similarity=0.336 Sum_probs=37.8
Q ss_pred CCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q 019479 111 FDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ 155 (340)
Q Consensus 111 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~ 155 (340)
+.+-..|+|+|.|.|.++..+.-.+ +..|.+||-|....+.|++
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 3466799999999999999998886 7899999999887777764
No 322
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.06 E-value=1.1 Score=42.60 Aligned_cols=101 Identities=18% Similarity=0.247 Sum_probs=65.3
Q ss_pred HHHHhccccCCCCCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCC
Q 019479 100 MRDEALEPADLFDRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDY 178 (340)
Q Consensus 100 ~~~~~l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~ 178 (340)
..+.++......-++++|+-+|+|. |......++.. +.+|+++|.++.-.+.|+.. +.... +.++. -..
T Consensus 188 ~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~----G~~~~--~~~e~---v~~ 257 (413)
T cd00401 188 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAME----GYEVM--TMEEA---VKE 257 (413)
T ss_pred hHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhc----CCEEc--cHHHH---HcC
Confidence 3344444444444799999999995 66666666665 67999999999888877753 22221 11111 134
Q ss_pred ccEEEecCcccccCCHHHHHHH-HHHhcccCcEEEEEcc
Q 019479 179 ADRYVSAGSIEYWPDPQRGIKE-AYRVLKIGGKACVIGP 216 (340)
Q Consensus 179 fD~v~~~~~l~~~~d~~~~l~~-~~~~LkpgG~l~i~~~ 216 (340)
+|+|+.... . ..++.. ..+.+|+||+++....
T Consensus 258 aDVVI~atG-----~-~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 258 GDIFVTTTG-----N-KDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred CCEEEECCC-----C-HHHHHHHHHhcCCCCcEEEEeCC
Confidence 799986432 2 234554 5899999999988763
No 323
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.01 E-value=1.4 Score=40.64 Aligned_cols=123 Identities=21% Similarity=0.227 Sum_probs=82.3
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC---CCCCCccEEEecCcccc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP---FPTDYADRYVSAGSIEY 190 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~---~~~~~fD~v~~~~~l~~ 190 (340)
..+++|+=||.|.+..-+... +---+.++|+++.+++.-+.+... ..++..|+.+.. +....+|+++...-...
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a-gf~~~~a~Eid~~a~~ty~~n~~~--~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~ 79 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA-GFEIVFANEIDPPAVATYKANFPH--GDIILGDIKELDGEALRKSDVDVLIGGPPCQD 79 (328)
T ss_pred CceEEeeccCCchHHHHHHhc-CCeEEEEEecCHHHHHHHHHhCCC--CceeechHhhcChhhccccCCCEEEeCCCCcc
Confidence 468999999999999888776 224567899999999988877543 455667775433 11116899998655554
Q ss_pred c---------CCHH----HHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCc
Q 019479 191 W---------PDPQ----RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFK 250 (340)
Q Consensus 191 ~---------~d~~----~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~ 250 (340)
+ .|+. --+.++...++| .+++.+.+..-... .-.+.+.+.+.|++.||.
T Consensus 80 FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~~~---------~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 80 FSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLLSS---------KGQTFDEIKKELEELGYG 141 (328)
T ss_pred hhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHHhc---------CchHHHHHHHHHHHcCCc
Confidence 3 2333 234556666778 66666654321111 223678899999999997
No 324
>PRK13699 putative methylase; Provisional
Probab=92.95 E-value=0.37 Score=41.91 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=46.2
Q ss_pred chHHHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC
Q 019479 96 WTEDMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE 157 (340)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~ 157 (340)
.-..+.+.++.... .++..|||.=||+|..+....+. +.+++|+|++++..+.+.++.
T Consensus 148 kP~~l~~~~i~~~s--~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~ 205 (227)
T PRK13699 148 KPVTSLQPLIESFT--HPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRL 205 (227)
T ss_pred CcHHHHHHHHHHhC--CCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHH
Confidence 33455555554433 47889999999999999987776 789999999999999998774
No 325
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=92.90 E-value=0.25 Score=45.47 Aligned_cols=45 Identities=24% Similarity=0.449 Sum_probs=37.4
Q ss_pred CCCEEEEEcCccchHHHHHHHhC----C----CceEEEEeCCHHHHHHHHHhC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV----D----AKNVTILDQSPHQLAKAKQKE 157 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~----~----~~~v~g~D~s~~~~~~a~~~~ 157 (340)
.+..++|+|.|+|.++..+++.. | ..++..+++|++..+.-++++
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L 129 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETL 129 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHH
Confidence 46789999999999999887754 3 578999999999888777664
No 326
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.18 E-value=0.57 Score=41.97 Aligned_cols=95 Identities=20% Similarity=0.218 Sum_probs=60.8
Q ss_pred CCCEEEEEcCc-cchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCcEEEEcCC-CCC-C-CCCCCccEEEecCc
Q 019479 113 RNMRVVDVGGG-TGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECTIIEGDA-EDL-P-FPTDYADRYVSAGS 187 (340)
Q Consensus 113 ~~~~vLDiGcG-~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~-~~~-~-~~~~~fD~v~~~~~ 187 (340)
++.+||-+|+| .|..+..+++.. +. +|+++|.++.-.+.+++.-...-+.. .+. ... . .....+|+|+-...
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~--~~~~~~~~~~~~~~g~d~vid~~G 196 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELALSFGATALAEP--EVLAERQGGLQNGRGVDVALEFSG 196 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHcCCcEecCc--hhhHHHHHHHhCCCCCCEEEECCC
Confidence 67899999886 466677777775 55 49999999988888876422110110 111 000 0 12235898875321
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
....++.+.+.|+++|++++...
T Consensus 197 ------~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 197 ------ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred ------ChHHHHHHHHHhcCCCEEEEecc
Confidence 13467888999999999988764
No 327
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=92.05 E-value=0.62 Score=42.85 Aligned_cols=98 Identities=19% Similarity=0.230 Sum_probs=60.7
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC-C-CCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL-P-FPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~-~-~~~~~fD~v~~~~~ 187 (340)
.++.+||-+|+| .|..+..+++.. +.+ |+++|.+++..+.+++.....-+.....+...+ . .....+|+|+-...
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g 240 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSG 240 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCC
Confidence 468899999885 456667777775 556 999999999888886542211011111111011 0 12236899885322
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
....+....+.|+++|++++...
T Consensus 241 ------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 241 ------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred ------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 22356777889999999987754
No 328
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=92.04 E-value=0.93 Score=41.99 Aligned_cols=98 Identities=19% Similarity=0.247 Sum_probs=60.3
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC----C-C-CCCCcc----
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL----P-F-PTDYAD---- 180 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~----~-~-~~~~fD---- 180 (340)
+++.+||-+|+|. |..+..+++.. +.+|+++|.+++..+.+++.-...-+.....+..++ . . ....+|
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d 243 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGW 243 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcC
Confidence 4688999999975 77777888876 568999999999999887642111011111110000 0 1 112344
Q ss_pred EEEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 181 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+|+-. . -....++.+.+.|++||++++...
T Consensus 244 ~v~d~-----~-g~~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 244 KIFEC-----S-GSKPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred EEEEC-----C-CChHHHHHHHHHHhcCCeEEEECc
Confidence 45421 1 113466778889999999988764
No 329
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.83 E-value=2.2 Score=39.08 Aligned_cols=122 Identities=15% Similarity=0.031 Sum_probs=74.6
Q ss_pred EEEEcCccchHHHHHHHhCCCceE-EEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCC-CCCCccEEEecCccccc---
Q 019479 117 VVDVGGGTGFTTLGIVKHVDAKNV-TILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPF-PTDYADRYVSAGSIEYW--- 191 (340)
Q Consensus 117 vLDiGcG~G~~~~~l~~~~~~~~v-~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~-~~~~fD~v~~~~~l~~~--- 191 (340)
|+|+-||.|.+..-+.+. +.++ .++|+++.+++.-+.+... .+..+|+.++.. .-..+|+++...-...+
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~---~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~a 75 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN---KVPFGDITKISPSDIPDFDILLGGFPCQPFSIA 75 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC---CCCccChhhhhhhhCCCcCEEEecCCCcccchh
Confidence 689999999999988776 5664 5799999999998877542 445678766532 12348998875433322
Q ss_pred ------CCHH-HHHHHHHHh---cccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEE
Q 019479 192 ------PDPQ-RGIKEAYRV---LKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 192 ------~d~~-~~l~~~~~~---LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 253 (340)
.|.. ..+.+..++ ++| .+++.+.+..-.... .-.....+.+.|++.||.+..
T Consensus 76 g~~~~~~d~r~~L~~~~~r~i~~~~P--~~~v~ENV~~l~~~~--------~~~~~~~i~~~l~~~GY~v~~ 137 (315)
T TIGR00675 76 GKRKGFEDTRGTLFFEIVRILKEKKP--KFFLLENVKGLVSHD--------KGRTFKVIIETLEELGYKVYY 137 (315)
T ss_pred cccCCCCCchhhHHHHHHHHHhhcCC--CEEEeeccHHHHhcc--------cchHHHHHHHHHHhCCCEEEE
Confidence 2333 334444444 455 355555443211000 011346778889999998643
No 330
>PLN02740 Alcohol dehydrogenase-like
Probab=91.62 E-value=0.75 Score=43.28 Aligned_cols=96 Identities=17% Similarity=0.232 Sum_probs=61.6
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcC-----CCC-C-CCCCCCccEEE
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGD-----AED-L-PFPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d-----~~~-~-~~~~~~fD~v~ 183 (340)
+++.+||-+|+| .|..+..+++..+..+|+++|.+++..+.+++.-. . .++... +.+ + ....+.+|+|+
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga-~--~~i~~~~~~~~~~~~v~~~~~~g~dvvi 273 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI-T--DFINPKDSDKPVHERIREMTGGGVDYSF 273 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC-c--EEEecccccchHHHHHHHHhCCCCCEEE
Confidence 578899999986 46677777877633379999999999999976422 1 122111 110 0 01122589888
Q ss_pred ecCcccccCCHHHHHHHHHHhcccC-cEEEEEcc
Q 019479 184 SAGSIEYWPDPQRGIKEAYRVLKIG-GKACVIGP 216 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l~~~~~~Lkpg-G~l~i~~~ 216 (340)
-... ....+....+.+++| |++++...
T Consensus 274 d~~G------~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 274 ECAG------NVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred ECCC------ChHHHHHHHHhhhcCCCEEEEEcc
Confidence 5332 124677888889997 99887653
No 331
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=91.56 E-value=0.28 Score=46.80 Aligned_cols=106 Identities=15% Similarity=0.030 Sum_probs=74.1
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC---CCcEEEEcCCCC-------CCCCCCCccEE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECTIIEGDAED-------LPFPTDYADRY 182 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~---~~i~~~~~d~~~-------~~~~~~~fD~v 182 (340)
.+..+|-+|-|.|.+...+...+|..+++++++.|++++.|++.... .+..+...|-.+ ....+..||++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 46688999999999999999888989999999999999999987432 112222222211 01134568988
Q ss_pred Ee----cCcccccCCH------HHHHHHHHHhcccCcEEEEEccCCC
Q 019479 183 VS----AGSIEYWPDP------QRGIKEAYRVLKIGGKACVIGPVYP 219 (340)
Q Consensus 183 ~~----~~~l~~~~d~------~~~l~~~~~~LkpgG~l~i~~~~~~ 219 (340)
+. .. .|-+..+ ..+|..+...|.|.|.+++......
T Consensus 375 ~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 375 MVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred EEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 85 22 3333222 2688899999999999988754444
No 332
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=91.51 E-value=0.89 Score=42.02 Aligned_cols=98 Identities=16% Similarity=0.206 Sum_probs=59.5
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC--CCCCCCcc-EEEecC
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL--PFPTDYAD-RYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~--~~~~~~fD-~v~~~~ 186 (340)
.++.+||-.|+| .|..+..+++.. +. .|+++|.+++..+.+++.....-+.....+...+ ......+| +|+-..
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~ 237 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETA 237 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECC
Confidence 468899999986 466677777776 55 4789999999888886532110011111110000 01223577 555321
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
-....+.+..+.|++||++++...
T Consensus 238 ------G~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 238 ------GVPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred ------CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 113477888999999999988764
No 333
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=91.38 E-value=0.86 Score=41.99 Aligned_cols=99 Identities=17% Similarity=0.193 Sum_probs=67.9
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-C-CCCC-CCccEEEecC
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-L-PFPT-DYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~-~~~~-~~fD~v~~~~ 186 (340)
+++.+||-.|+ |-|.++..+++... ..++++--+++-.+.+++...+.-+.+...|+.+ . .+.. ..+|+|+-.-
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G-~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~v 219 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALG-ATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTV 219 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcC-CcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECC
Confidence 56899999995 56789999999974 3777777778777777765443334444454422 1 1223 3699999532
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
. ...+.+..+.|+++|+++......
T Consensus 220 G-------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 220 G-------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred C-------HHHHHHHHHHhccCCEEEEEecCC
Confidence 2 246677899999999998876543
No 334
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=91.11 E-value=0.28 Score=46.00 Aligned_cols=60 Identities=18% Similarity=0.305 Sum_probs=49.9
Q ss_pred CCcEEEEcCCCCC--CCCCCCccEEEecCcccccCCHH--HHHHHHHHhcccCcEEEEEccCCC
Q 019479 160 KECTIIEGDAEDL--PFPTDYADRYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACVIGPVYP 219 (340)
Q Consensus 160 ~~i~~~~~d~~~~--~~~~~~fD~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~l~i~~~~~~ 219 (340)
++++++.+++.+. ..+++++|.+++.....++++.. +.++++.+.++|||++++-....+
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 7899999999663 25678999999999999987653 789999999999999998765544
No 335
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=91.11 E-value=3.2 Score=37.81 Aligned_cols=130 Identities=18% Similarity=0.238 Sum_probs=78.6
Q ss_pred EEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC---CCCCCccEEEecCccccc-
Q 019479 116 RVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP---FPTDYADRYVSAGSIEYW- 191 (340)
Q Consensus 116 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~- 191 (340)
+++|+-||.|.+..-+.+. +...+.++|+++.+++.-+.+.. ....+|+.++. ++. .+|+++...-...+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g~~~~~a~e~~~~a~~~y~~N~~----~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS 75 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-GFEVVWAVEIDPDACETYKANFP----EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFS 75 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-TEEEEEEEESSHHHHHHHHHHHT----EEEESHGGGCHHHHHHH-T-SEEEEE---TTTS
T ss_pred cEEEEccCccHHHHHHHhc-CcEEEEEeecCHHHHHhhhhccc----ccccccccccccccccc-cceEEEeccCCceEe
Confidence 7899999999999998887 22467899999999999887754 77888987754 333 59999975443332
Q ss_pred --------CCHH-HH---HHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeCC
Q 019479 192 --------PDPQ-RG---IKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIGP 259 (340)
Q Consensus 192 --------~d~~-~~---l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~ 259 (340)
.|.. .+ +-++.+.++|. +++.+.+..-...... ...+.+.+.|++.|+.+ ....+..
T Consensus 76 ~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk--~~~~ENV~~l~~~~~~--------~~~~~i~~~l~~lGY~v-~~~vlna 144 (335)
T PF00145_consen 76 IAGKRKGFDDPRNSLFFEFLRIVKELKPK--YFLLENVPGLLSSKNG--------EVFKEILEELEELGYNV-QWRVLNA 144 (335)
T ss_dssp TTSTHHCCCCHTTSHHHHHHHHHHHHS-S--EEEEEEEGGGGTGGGH--------HHHHHHHHHHHHTTEEE-EEEEEEG
T ss_pred ccccccccccccchhhHHHHHHHhhccce--EEEecccceeeccccc--------cccccccccccccceee-hhccccH
Confidence 2332 12 33344556773 3344433221100000 13467888999999975 4555544
Q ss_pred ccc
Q 019479 260 KWY 262 (340)
Q Consensus 260 ~~~ 262 (340)
..|
T Consensus 145 ~~y 147 (335)
T PF00145_consen 145 ADY 147 (335)
T ss_dssp GGG
T ss_pred hhC
Confidence 444
No 336
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=91.09 E-value=2.2 Score=37.84 Aligned_cols=93 Identities=22% Similarity=0.259 Sum_probs=60.8
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
.++.+||-.|+|. |..+..+++.. +.+ |++++.+++..+.+++......+..... . ......+|+|+....-
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~~~d~vl~~~~~- 169 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEALGPADPVAADTA---D-EIGGRGADVVIEASGS- 169 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHHcCCCccccccch---h-hhcCCCCCEEEEccCC-
Confidence 4788899998875 67777777775 556 9999999998887775421111110000 0 1123458988853211
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
...+.+..+.|+++|+++...
T Consensus 170 -----~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 170 -----PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred -----hHHHHHHHHHhcCCcEEEEEe
Confidence 236788899999999998764
No 337
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=90.99 E-value=0.54 Score=44.16 Aligned_cols=100 Identities=19% Similarity=0.136 Sum_probs=57.4
Q ss_pred CCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 113 RNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 113 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
++.+|+-+|+| .|..+...+... +.+|+++|.+++..+.+.+.... .+.....+.+++.-.-..+|+|+..-.....
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~g~-~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEFGG-RIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcCc-eeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 45679999998 566777777765 56899999998877766544321 1111111111111111358999975322111
Q ss_pred CCHHHHHHHHHHhcccCcEEEEE
Q 019479 192 PDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
..+.-+-++..+.+|||+.++-.
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEE
Confidence 11222235666778999887654
No 338
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=90.97 E-value=0.12 Score=48.21 Aligned_cols=59 Identities=29% Similarity=0.260 Sum_probs=48.6
Q ss_pred CCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC-----CCcEEEEcCC
Q 019479 109 DLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECTIIEGDA 169 (340)
Q Consensus 109 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-----~~i~~~~~d~ 169 (340)
..+++|..|-|+-||.|-++..++.+ +++|++.|++++++++.+.+... .+++....|+
T Consensus 245 g~fk~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda 308 (495)
T KOG2078|consen 245 GLFKPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDA 308 (495)
T ss_pred hccCCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccchhheeeecccH
Confidence 35578999999999999999999998 79999999999999999987543 2355555555
No 339
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=90.92 E-value=1.9 Score=39.32 Aligned_cols=94 Identities=18% Similarity=0.232 Sum_probs=61.2
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-CCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-FPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-~~~~~fD~v~~~~~l~ 189 (340)
.++.+||-+|+| .|..+..+++.. +.+|++++.+++..+.+++.. .. .++...-.... ...+.+|+++....
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~g-~~--~~~~~~~~~~~~~~~~~~d~vi~~~~-- 234 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARKLG-AD--EVVDSGAELDEQAAAGGADVILVTVV-- 234 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhC-Cc--EEeccCCcchHHhccCCCCEEEECCC--
Confidence 467889999987 677777777775 678999999999888885432 11 11111100000 01245898885321
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
....+..+.+.|+++|+++...
T Consensus 235 ----~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 ----SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ----cHHHHHHHHHhcccCCEEEEEC
Confidence 1236788899999999998775
No 340
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=90.92 E-value=3.2 Score=39.08 Aligned_cols=102 Identities=17% Similarity=0.143 Sum_probs=58.7
Q ss_pred CCCEEEEEcCccch----HHHHHHHhC---CCceEEEEeC----CHHHHHHHHHhCC----CCC--cEEEE---cCCCCC
Q 019479 113 RNMRVVDVGGGTGF----TTLGIVKHV---DAKNVTILDQ----SPHQLAKAKQKEP----LKE--CTIIE---GDAEDL 172 (340)
Q Consensus 113 ~~~~vLDiGcG~G~----~~~~l~~~~---~~~~v~g~D~----s~~~~~~a~~~~~----~~~--i~~~~---~d~~~~ 172 (340)
+..+|+|+|.|.|. +...++.+. |..++||++. +...++.+.+++. .-+ .+|.. .+.+++
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 56799999999995 333344442 4479999999 7777777765521 123 33333 233332
Q ss_pred -----CCCCCCccEEEecCcccccCC-------HHHHHHHHHHhcccCcEEEEE
Q 019479 173 -----PFPTDYADRYVSAGSIEYWPD-------PQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 173 -----~~~~~~fD~v~~~~~l~~~~d-------~~~~l~~~~~~LkpgG~l~i~ 214 (340)
....+.+=+|-+...+|++.+ +...+=...+.|+|.-.+++.
T Consensus 190 ~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 190 DPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred CHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 123333334556667788752 222333445578998665554
No 341
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=90.87 E-value=1.6 Score=40.56 Aligned_cols=97 Identities=20% Similarity=0.144 Sum_probs=63.8
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCC-cEEEEc-CCCC-C-CCCCCCccEEEec
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE-CTIIEG-DAED-L-PFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-i~~~~~-d~~~-~-~~~~~~fD~v~~~ 185 (340)
.++.+||-.|+ |.|..+..+++.. +.+|++++.+++..+.+++...... +..... ++.+ + ....+.+|+|+-.
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~ 235 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDN 235 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEEC
Confidence 57889999997 4788888888885 6789999999988888764333221 111111 1111 0 1112458988853
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.. ...+..+.+.|++||++++...
T Consensus 236 vG-------~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 236 VG-------GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred CC-------HHHHHHHHHHhccCCEEEEECc
Confidence 22 1367888999999999987753
No 342
>PLN02827 Alcohol dehydrogenase-like
Probab=90.70 E-value=0.91 Score=42.70 Aligned_cols=98 Identities=18% Similarity=0.153 Sum_probs=60.7
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCC-cEEEE--cCCCC-C-CCCCCCccEEEec
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE-CTIIE--GDAED-L-PFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-i~~~~--~d~~~-~-~~~~~~fD~v~~~ 185 (340)
.++.+||-.|+| -|..+..+++......|+++|.+++..+.+++.-. .. +.... .+..+ + ....+.+|+|+-.
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa-~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~ 270 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGV-TDFINPNDLSEPIQQVIKRMTGGGADYSFEC 270 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC-cEEEcccccchHHHHHHHHHhCCCCCEEEEC
Confidence 578999999885 46666777777633469999999998888875422 11 11110 01111 0 0112358988853
Q ss_pred CcccccCCHHHHHHHHHHhcccC-cEEEEEcc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIG-GKACVIGP 216 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~Lkpg-G~l~i~~~ 216 (340)
.. ....+....+.+++| |++++...
T Consensus 271 ~G------~~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 271 VG------DTGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred CC------ChHHHHHHHHhhccCCCEEEEECC
Confidence 22 123577888899998 99987653
No 343
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.62 E-value=7.3 Score=35.26 Aligned_cols=148 Identities=16% Similarity=0.161 Sum_probs=83.0
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCCCC------------------------CcEEE
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLK------------------------ECTII 165 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~------------------------~i~~~ 165 (340)
.....|+.+|||.-.....+...+ ....++=+|.++....++......+ +-..+
T Consensus 86 ~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~ 165 (335)
T KOG2918|consen 86 DGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHLI 165 (335)
T ss_pred CCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceeee
Confidence 466789999999998888888775 4578888999776666662211111 11112
Q ss_pred EcCCCCCC----------CCCCCccEEEecCcccccCCHH--HHHHHHHHhcccCcEEEEEccCCCchhHhhHhh-h---
Q 019479 166 EGDAEDLP----------FPTDYADRYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFA-D--- 229 (340)
Q Consensus 166 ~~d~~~~~----------~~~~~fD~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~-~--- 229 (340)
-.|+.++. ...+-.-++++-.++.+++... ..++.+...-.. +.+++-+...+.....+... .
T Consensus 166 g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~-a~fv~YEQi~~~D~Fg~vM~~nlk~ 244 (335)
T KOG2918|consen 166 GCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN-AHFVNYEQINPNDRFGKVMLANLKR 244 (335)
T ss_pred ccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc-ccEEEEeccCCCChHHHHHHHHHHh
Confidence 22332111 0011122344445555554332 455555555444 44444444433333222211 1
Q ss_pred ------HhhcCCCHHHHHHHHHHCCCcEEEEEEeCCc
Q 019479 230 ------VWMLFPKEEEYIEWFQKAGFKDVKLKRIGPK 260 (340)
Q Consensus 230 ------~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~ 260 (340)
....+.+.+..++-+.++||+.+.+.++..-
T Consensus 245 r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm~ei 281 (335)
T KOG2918|consen 245 RGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDMNEI 281 (335)
T ss_pred cCCCCchhhhcccHHHHHHHHHhcCCceeehhhHHHH
Confidence 1223678999999999999999998887543
No 344
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=90.54 E-value=0.86 Score=39.30 Aligned_cols=96 Identities=13% Similarity=0.118 Sum_probs=57.0
Q ss_pred CchHHHHHHhccccCCC-CCCCEEEEEcCccchHHHHH-HHhCCCceEEEEeCCHHHHHHHHHhCCC-C----CcEEEEc
Q 019479 95 HWTEDMRDEALEPADLF-DRNMRVVDVGGGTGFTTLGI-VKHVDAKNVTILDQSPHQLAKAKQKEPL-K----ECTIIEG 167 (340)
Q Consensus 95 ~~~~~~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l-~~~~~~~~v~g~D~s~~~~~~a~~~~~~-~----~i~~~~~ 167 (340)
.+.+.+.+.+....... .++.++||||.|.--.--.+ ...| +.+.+|.|+++..++.|+..... + .++....
T Consensus 59 dYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~q 137 (292)
T COG3129 59 DYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQ 137 (292)
T ss_pred HHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcchhhheeEEec
Confidence 34444444444444333 36778999998853221111 1223 67899999999999999876321 1 2443322
Q ss_pred CC-C----CCCCCCCCccEEEecCccccc
Q 019479 168 DA-E----DLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 168 d~-~----~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.- . ...-..+.||+++|+--+|..
T Consensus 138 k~~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 138 KDSDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred cCccccccccccccceeeeEecCCCcchh
Confidence 21 1 112235789999999888854
No 345
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=90.37 E-value=1.6 Score=40.76 Aligned_cols=96 Identities=19% Similarity=0.242 Sum_probs=56.9
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEE-cCCCCCCCCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIE-GDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~-~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
.++.+||-.|+| .|..+..+++.. +.++++++.++.....+.+..... .++. .+...+....+.+|+|+-...
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~~Ga~--~vi~~~~~~~~~~~~~~~D~vid~~g-- 256 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINRLGAD--SFLVSTDPEKMKAAIGTMDYIIDTVS-- 256 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHhCCCc--EEEcCCCHHHHHhhcCCCCEEEECCC--
Confidence 467889889986 567777788875 678888887765443332222211 1111 111111101124888885322
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
....+.++.+.|++||+++....
T Consensus 257 ----~~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 257 ----AVHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred ----CHHHHHHHHHHhcCCcEEEEeCC
Confidence 12367888999999999987753
No 346
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=90.02 E-value=1.5 Score=40.09 Aligned_cols=100 Identities=20% Similarity=0.228 Sum_probs=67.0
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEc-CCCC--CCCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEG-DAED--LPFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~-d~~~--~~~~~~~fD~v~~~~~ 187 (340)
+++.+|.-+||| -|..++.-+......+++++|+++.-+++|++.-...-+.-... |+-+ ....+...|.++-
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e--- 260 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFE--- 260 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEE---
Confidence 588999999997 57778888888777899999999999999997632111111111 2211 1133445777753
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
..-+ ...++.....+.++|..+++...
T Consensus 261 --~~G~-~~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 261 --CVGN-VEVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred --ccCC-HHHHHHHHHHHhcCCeEEEEecC
Confidence 2222 23778888888889999887543
No 347
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=89.86 E-value=1.6 Score=39.82 Aligned_cols=95 Identities=19% Similarity=0.074 Sum_probs=62.3
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCC-cEEEEcCCCC-C-CCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE-CTIIEGDAED-L-PFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-i~~~~~d~~~-~-~~~~~~fD~v~~~~ 186 (340)
.++.+||-.|+ |.|..+..+++.. +.+|++++.+++..+.+++. .... +.....|+.+ + ....+.+|+|+-..
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~~-Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~ 219 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKEL-GFDAVFNYKTVSLEEALKEAAPDGIDCYFDNV 219 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc-CCCEEEeCCCccHHHHHHHHCCCCcEEEEECC
Confidence 47889998884 5778888888885 77899999999888888763 2111 1111111110 0 11234589888432
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
. ...+....+.|+++|+++...
T Consensus 220 g-------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 220 G-------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred C-------HHHHHHHHHhhccCCEEEEEc
Confidence 1 145788899999999998764
No 348
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=89.69 E-value=0.48 Score=44.54 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=40.8
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC----CCCcEEEE
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----LKECTIIE 166 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~----~~~i~~~~ 166 (340)
...|||||+|||.++...++. .+-.|++++.-..|.+.|++... .++|+++.
T Consensus 67 kv~vLdigtGTGLLSmMAvra-gaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vIn 122 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRA-GADSVTACEVFKPMVDLARKIMHKNGMSDKINVIN 122 (636)
T ss_pred eEEEEEccCCccHHHHHHHHh-cCCeEEeehhhchHHHHHHHHHhcCCCccceeeec
Confidence 356999999999999988887 35679999999999999987632 24455544
No 349
>PRK11524 putative methyltransferase; Provisional
Probab=89.41 E-value=0.36 Score=43.53 Aligned_cols=56 Identities=29% Similarity=0.337 Sum_probs=38.3
Q ss_pred CCcEEEEcCCCCC--CCCCCCccEEEecCccc------c----cC------CHHHHHHHHHHhcccCcEEEEEc
Q 019479 160 KECTIIEGDAEDL--PFPTDYADRYVSAGSIE------Y----WP------DPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 160 ~~i~~~~~d~~~~--~~~~~~fD~v~~~~~l~------~----~~------d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.+.+++++|..+. .+++++||+|++.--.. . +. -....+.++.++|||||.+++..
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 4456788888653 35678899999843221 0 00 01368899999999999998864
No 350
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=89.34 E-value=2.4 Score=37.37 Aligned_cols=104 Identities=13% Similarity=0.115 Sum_probs=58.2
Q ss_pred CCCEEEEEcCccchHHHHHHH---hC--CCceEEEEeCCH--------------------------HHHHHHHHhCC---
Q 019479 113 RNMRVVDVGGGTGFTTLGIVK---HV--DAKNVTILDQSP--------------------------HQLAKAKQKEP--- 158 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~---~~--~~~~v~g~D~s~--------------------------~~~~~a~~~~~--- 158 (340)
-+..|+|+||-.|..+..++. .+ ++.+++++|.=+ ...+..+++..
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 356899999999987765543 22 346788888521 12344444432
Q ss_pred --CCCcEEEEcCCCC-CC-CCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 159 --LKECTIIEGDAED-LP-FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 159 --~~~i~~~~~d~~~-~~-~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
.+++.++.|.+.+ +| .+..++-++.+-.=++ .....+|..++..|.|||.+++-+...
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY--esT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY--ESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH--HHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEeccch--HHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 3579999999854 44 2233333333221111 122478999999999999998887665
No 351
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=89.26 E-value=1.9 Score=39.44 Aligned_cols=95 Identities=17% Similarity=0.064 Sum_probs=62.1
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCc-EEEEc-CCCC-C-CCCCCCccEEEec
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC-TIIEG-DAED-L-PFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i-~~~~~-d~~~-~-~~~~~~fD~v~~~ 185 (340)
.++.+||-.|+ |.|..+..+++.. +.+|++++.+++..+.+++. ....+ ..... +..+ . ....+.+|+|+-.
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~l-Ga~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~ 214 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKKL-GFDVAFNYKTVKSLEETLKKASPDGYDCYFDN 214 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc-CCCEEEeccccccHHHHHHHhCCCCeEEEEEC
Confidence 57889998884 5788888888885 67899999999888888653 22111 11110 1111 0 1123458988843
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.. . ..+....++|+++|+++...
T Consensus 215 ~G-----~--~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 215 VG-----G--EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred CC-----H--HHHHHHHHHhCcCcEEEEec
Confidence 21 1 24578899999999998765
No 352
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=89.21 E-value=2 Score=39.46 Aligned_cols=98 Identities=19% Similarity=0.304 Sum_probs=60.2
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-C--CCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-L--PFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~--~~~~~~fD~v~~~~~ 187 (340)
+++.+||..|+| .|..+..+++..+...+++++.++...+.+++.....-+.....++.+ + ....+.+|+++-...
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~~g 245 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEAVG 245 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEccC
Confidence 467888888875 477778888876324788998888877777653211001111111100 0 012356898885322
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
- ...+.+..+.|+++|+++...
T Consensus 246 ~------~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 246 F------EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred C------HHHHHHHHHHhhcCCEEEEEc
Confidence 1 247788899999999988664
No 353
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=89.09 E-value=2 Score=39.76 Aligned_cols=99 Identities=20% Similarity=0.244 Sum_probs=61.7
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-C-C-CCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-L-P-FPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~-~-~~~~~fD~v~~~~~ 187 (340)
+++.+||-.|+| .|..+..+++..+...++++|.+++..+.+++.-...-+.....+..+ . . .....+|+|+-...
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g 244 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIAGG 244 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEECCC
Confidence 468899998876 466777778776334699999999888888753211001111111100 0 1 12345898885322
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
....+.++.+.|+++|+++....
T Consensus 245 ------~~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 245 ------GQDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred ------CHHHHHHHHHHhhcCCEEEEecc
Confidence 12467889999999999987653
No 354
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=89.02 E-value=2.2 Score=39.06 Aligned_cols=97 Identities=21% Similarity=0.308 Sum_probs=62.4
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-C--CCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-L--PFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~--~~~~~~fD~v~~~~~ 187 (340)
.++.+||..|+|. |..+..+++.. +.+|+++..+++..+.+++.....-+.....++.+ + ......+|+++....
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~g 236 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDATG 236 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECCC
Confidence 4678999998864 77788888875 78899998888888887654211101111111100 1 013345899986421
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
....+.++.+.|+++|+++...
T Consensus 237 ------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 237 ------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred ------CHHHHHHHHHHHhcCCEEEEEc
Confidence 1346788899999999988764
No 355
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=88.96 E-value=1.7 Score=40.66 Aligned_cols=99 Identities=15% Similarity=0.219 Sum_probs=61.6
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEE--cCCCC-C-CCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIE--GDAED-L-PFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~--~d~~~-~-~~~~~~fD~v~~~~ 186 (340)
+++.+||-.|+| .|..+..+++..+..+|+++|.+++..+.+++.-...-+.... .++.+ + ....+.+|+|+-..
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~ 263 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECI 263 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECC
Confidence 578899999986 4667777888763337999999999999987642211011110 01100 0 01123588887532
Q ss_pred cccccCCHHHHHHHHHHhcccC-cEEEEEcc
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIG-GKACVIGP 216 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~Lkpg-G~l~i~~~ 216 (340)
. . ...+.++.+.+++| |++++...
T Consensus 264 G-----~-~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 264 G-----N-VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred C-----C-HHHHHHHHHHhhcCCCeEEEEec
Confidence 2 1 34677888899886 99887754
No 356
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.87 E-value=14 Score=31.66 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=59.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhC-CCCCcEEEEcCCCCCC-----C-----CCCCc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKE-PLKECTIIEGDAEDLP-----F-----PTDYA 179 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~-~~~~i~~~~~d~~~~~-----~-----~~~~f 179 (340)
++++||-.|++. ..+..+++.+ .+.+|++++.+++..+...+.. ...++.++.+|+.+.. + .-+..
T Consensus 4 ~~~~vlItGa~g-~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 82 (238)
T PRK05786 4 KGKKVAIIGVSE-GLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAI 82 (238)
T ss_pred CCcEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 467899999853 3333333322 3789999999887665553321 2235788888886522 0 01346
Q ss_pred cEEEecCcccccC---CH--------------HHHHHHHHHhcccCcEEEEEcc
Q 019479 180 DRYVSAGSIEYWP---DP--------------QRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 180 D~v~~~~~l~~~~---d~--------------~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
|.++.+....... +. ...++.+.+.++++|.+++...
T Consensus 83 d~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 83 DGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 8777655432111 11 1235566667778888877653
No 357
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=88.87 E-value=5.4 Score=36.32 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=61.2
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC----CCCCCCccEEEec
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL----PFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~----~~~~~~fD~v~~~ 185 (340)
.++.+||.+|+| .|..+..+++.. +.+ +++++.+++..+.+++... . .++..+-... ....+.+|+++..
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~g~-~--~~~~~~~~~~~~~~~~~~~~vd~v~~~ 233 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKKLGA-T--ETVDPSREDPEAQKEDNPYGFDVVIEA 233 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCC-e--EEecCCCCCHHHHHHhcCCCCcEEEEC
Confidence 467899999876 366777777775 555 8999999988888865321 1 1221111110 1133568999864
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.. ....+.++.+.|+++|+++...
T Consensus 234 ~~------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 234 TG------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CC------ChHHHHHHHHHHhcCCEEEEEe
Confidence 21 1356788899999999998764
No 358
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=88.64 E-value=3.3 Score=38.49 Aligned_cols=97 Identities=20% Similarity=0.293 Sum_probs=58.7
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
.++.+||-.|+| .|..+..+++.. +.++++++.+++..+.+.+......+ +...+...+......+|+|+-...
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~~~~~Ga~~~-i~~~~~~~~~~~~~~~D~vid~~g--- 253 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSDKKREEALEHLGADDY-LVSSDAAEMQEAADSLDYIIDTVP--- 253 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHhcCCcEE-ecCCChHHHHHhcCCCcEEEECCC---
Confidence 467888888775 566777778875 67888888888766665544332111 111111111001124788874321
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
....+..+.+.|++||+++....
T Consensus 254 ---~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 254 ---VFHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred ---chHHHHHHHHHhccCCEEEEECC
Confidence 12467788899999999988754
No 359
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=88.38 E-value=6.8 Score=37.09 Aligned_cols=102 Identities=20% Similarity=0.227 Sum_probs=62.9
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEc---CCCC-CC--CCCCCccEEEe
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEG---DAED-LP--FPTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~---d~~~-~~--~~~~~fD~v~~ 184 (340)
.++.+||-.|+| .|..+..+++......++.+|.++.-.+.+++.-. . .+... ++.+ +. .....+|+|+-
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga-~--~v~~~~~~~~~~~v~~~~~~~g~Dvvid 260 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGC-E--TVDLSKDATLPEQIEQILGEPEVDCAVD 260 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCC-e--EEecCCcccHHHHHHHHcCCCCCcEEEE
Confidence 467888888886 46667777777643446677998888888887422 1 12111 1111 10 12235898885
Q ss_pred cCcccc--------cCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 185 AGSIEY--------WPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 185 ~~~l~~--------~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
...... -.+....++++.+.+++||++++...
T Consensus 261 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 261 CVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 433210 01223578999999999999998764
No 360
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=88.10 E-value=2.8 Score=31.96 Aligned_cols=85 Identities=20% Similarity=0.182 Sum_probs=52.9
Q ss_pred CCEEEEEcCccchH-HHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCC-CCCccEEEecCccccc
Q 019479 114 NMRVVDVGGGTGFT-TLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFP-TDYADRYVSAGSIEYW 191 (340)
Q Consensus 114 ~~~vLDiGcG~G~~-~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~-~~~fD~v~~~~~l~~~ 191 (340)
..+|+|+|-|.=.. +..++++ ++.++++|+.+. .+ . ..++++..|+.+.... -...|+|++ +
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~---~a----~-~g~~~v~DDitnP~~~iY~~A~lIYS------i 77 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK---TA----P-EGLRFVVDDITNPNISIYEGADLIYS------I 77 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc---cC----c-ccceEEEccCCCccHHHhhCccceee------c
Confidence 45999999986543 4555555 799999999775 22 2 6789999999873311 133688875 3
Q ss_pred CCHHHHHHHHHHhccc-CcEEEEE
Q 019479 192 PDPQRGIKEAYRVLKI-GGKACVI 214 (340)
Q Consensus 192 ~d~~~~l~~~~~~Lkp-gG~l~i~ 214 (340)
..+.++.+.+.++-+. |..+++.
T Consensus 78 RpppEl~~~ildva~aVga~l~I~ 101 (129)
T COG1255 78 RPPPELQSAILDVAKAVGAPLYIK 101 (129)
T ss_pred CCCHHHHHHHHHHHHhhCCCEEEE
Confidence 3344444444444433 3455554
No 361
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=87.95 E-value=2.3 Score=39.67 Aligned_cols=97 Identities=16% Similarity=0.226 Sum_probs=61.1
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCC-cEEEEc--CCCC-C-CCCCCCccEEEe
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKE-CTIIEG--DAED-L-PFPTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~-i~~~~~--d~~~-~-~~~~~~fD~v~~ 184 (340)
+++.+||-+|+| .|..+..+++.. +. .|+++|.+++..+.+++.-. .. +..... ++.+ . ....+.+|+|+-
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~-G~~~vi~~~~~~~~~~~~~~lGa-~~~i~~~~~~~~~~~~v~~~~~~g~d~vid 262 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAA-GASRIIGIDINPDKFELAKKFGA-TDCVNPKDHDKPIQQVLVEMTDGGVDYTFE 262 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHcCC-CEEEcccccchHHHHHHHHHhCCCCcEEEE
Confidence 578899999875 456677777775 55 79999999999988875321 11 111111 1100 0 012236898885
Q ss_pred cCcccccCCHHHHHHHHHHhcccC-cEEEEEcc
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIG-GKACVIGP 216 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~Lkpg-G~l~i~~~ 216 (340)
... ....+....+.|+++ |++++...
T Consensus 263 ~~g------~~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 263 CIG------NVKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred CCC------ChHHHHHHHHhhccCCCeEEEEcc
Confidence 321 124678888899997 99987754
No 362
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=87.92 E-value=6.2 Score=39.71 Aligned_cols=90 Identities=18% Similarity=0.138 Sum_probs=57.8
Q ss_pred CEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----CCCCCccEEEecCcc
Q 019479 115 MRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----FPTDYADRYVSAGSI 188 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~~~l 188 (340)
.+|+=+|+| .++..+++.. .+.+++.+|.+++.++.+++ .+..++.+|..+.. ..-+..|++++.
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g~~v~~GDat~~~~L~~agi~~A~~vv~~--- 471 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRK----YGYKVYYGDATQLELLRAAGAEKAEAIVIT--- 471 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CCCeEEEeeCCCHHHHHhcCCccCCEEEEE---
Confidence 467666665 4444444322 36799999999999998875 35678999997632 233467887763
Q ss_pred cccCCHHH--HHHHHHHhcccCcEEEEEc
Q 019479 189 EYWPDPQR--GIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 189 ~~~~d~~~--~l~~~~~~LkpgG~l~i~~ 215 (340)
.+|.+. .+-...|.+.|..+++...
T Consensus 472 --~~d~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 472 --CNEPEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred --eCCHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 334432 3334455677888877654
No 363
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.86 E-value=4.4 Score=36.80 Aligned_cols=97 Identities=22% Similarity=0.232 Sum_probs=63.4
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC------CCCCCCCccEEEe
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED------LPFPTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~------~~~~~~~fD~v~~ 184 (340)
.++.+|.-+|+|. |.....-++..+..+++|+|++++-.+.|++.-.-+-++.. |..+ ....++.+|+-+-
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~--d~~~~i~evi~EmTdgGvDysfE 268 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPK--DLKKPIQEVIIEMTDGGVDYSFE 268 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChh--hccccHHHHHHHHhcCCceEEEE
Confidence 5788999999985 55555556665668999999999999999975322111111 3332 0134566776552
Q ss_pred cCcccccCCHHHHHHHHHHhcccC-cEEEEEcc
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIG-GKACVIGP 216 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~Lkpg-G~l~i~~~ 216 (340)
++. ....++++....+.| |.-+++..
T Consensus 269 --c~G----~~~~m~~al~s~h~GwG~sv~iGv 295 (375)
T KOG0022|consen 269 --CIG----NVSTMRAALESCHKGWGKSVVIGV 295 (375)
T ss_pred --ecC----CHHHHHHHHHHhhcCCCeEEEEEe
Confidence 222 235778888888899 88877653
No 364
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=87.64 E-value=2.1 Score=39.96 Aligned_cols=104 Identities=20% Similarity=0.133 Sum_probs=72.8
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC-----CCcEEEEcCCCCCC--------------
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECTIIEGDAEDLP-------------- 173 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-----~~i~~~~~d~~~~~-------------- 173 (340)
.+.++||.+|+.+.....+++.++-.+-.|+++..+.+..+..+... .+..+..+|+...+
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~ 259 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFG 259 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhcc
Confidence 46789999999999999999998777888899989888888754221 22344444432211
Q ss_pred ---------------CCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCC
Q 019479 174 ---------------FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYP 219 (340)
Q Consensus 174 ---------------~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~ 219 (340)
++...+|. ..+.-|+++...++......++|+|.+.+.+....
T Consensus 260 ~~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~~ 317 (364)
T KOG1269|consen 260 FEHLKLEKDLALKSSFPWNTPLT---RDTITHWQDKSALFRGRVATLKPGGKVLILEYIRG 317 (364)
T ss_pred chhhhhcccccCCCccccccccc---hhheeecccccHHHHhHhhccCcCceEEehhhcCc
Confidence 11223333 45556677777788999999999999998865443
No 365
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=87.50 E-value=1.2 Score=39.45 Aligned_cols=103 Identities=16% Similarity=0.158 Sum_probs=59.4
Q ss_pred CCCCCCCEEEEEcCccchHHHHHHHhC-----CCceEEEEeCCHHHHHHHHHhCCC----CCcEEEEcCCCCCC-----C
Q 019479 109 DLFDRNMRVVDVGGGTGFTTLGIVKHV-----DAKNVTILDQSPHQLAKAKQKEPL----KECTIIEGDAEDLP-----F 174 (340)
Q Consensus 109 ~~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~~v~g~D~s~~~~~~a~~~~~~----~~i~~~~~d~~~~~-----~ 174 (340)
..+.++..++|+|||.|.++..++... +...++.||-...-. ++..+... ..+.=+..|+.++. .
T Consensus 14 ~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~l~~~~~ 92 (259)
T PF05206_consen 14 GLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLDLSKLPE 92 (259)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccchhhccc
Confidence 334577899999999999999999987 457899999844222 22222111 23444556665543 2
Q ss_pred -C-CCCccEEEecCcccccCCHHHHHHHHHHhcc-------cCcEEEEE
Q 019479 175 -P-TDYADRYVSAGSIEYWPDPQRGIKEAYRVLK-------IGGKACVI 214 (340)
Q Consensus 175 -~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-------pgG~l~i~ 214 (340)
. +..-=++++.+....-.| -+|+-+.+..+ ..|.++..
T Consensus 93 ~~~~~~~vv~isKHLCG~ATD--laLRcl~~~~~~~~~~~~~~gi~iA~ 139 (259)
T PF05206_consen 93 LQNDEKPVVAISKHLCGAATD--LALRCLLNSQKLSEGNGSVRGIVIAP 139 (259)
T ss_pred ccCCCCcEEEEEccccccchh--HHHHhhccCccccccCCccCeEEEEe
Confidence 1 111124555555544344 45666665554 45665544
No 366
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=87.49 E-value=3.7 Score=37.77 Aligned_cols=96 Identities=21% Similarity=0.303 Sum_probs=60.9
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhCCCCCc-EEEEcCC----CCC--CCCCCCccEE
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKEC-TIIEGDA----EDL--PFPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~i-~~~~~d~----~~~--~~~~~~fD~v 182 (340)
.++.+||-.|+|. |..+..+++.. +.+ |++++.+++..+.+++. ....+ .....+. ..+ ......+|+|
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~-G~~~v~~~~~~~~~~~~~~~~-g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~v 238 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAF-GATKVVVTDIDPSRLEFAKEL-GATHTVNVRTEDTPESAEKIAELLGGKGPDVV 238 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHc-CCcEEeccccccchhHHHHHHHHhCCCCCCEE
Confidence 5788888888765 77778888875 555 89999888888877653 21111 1111111 000 1233458999
Q ss_pred EecCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 183 VSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 183 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
+-...- ...+.+..+.|+++|+++...
T Consensus 239 ld~~g~------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 239 IECTGA------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred EECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 864321 236788899999999988764
No 367
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=87.48 E-value=5.2 Score=37.99 Aligned_cols=90 Identities=19% Similarity=0.214 Sum_probs=57.6
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
..+++|+-+|+|. |......++.+ +.+|+++|.++.....+.. ....+ .+.++. -...|+|+....
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~~----~G~~v--~~leea---l~~aDVVItaTG--- 259 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEAAM----DGFRV--MTMEEA---AKIGDIFITATG--- 259 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHHh----cCCEe--CCHHHH---HhcCCEEEECCC---
Confidence 4789999999995 55555566654 6899999998865544442 12222 222221 134699886432
Q ss_pred cCCHHHHHH-HHHHhcccCcEEEEEccC
Q 019479 191 WPDPQRGIK-EAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 191 ~~d~~~~l~-~~~~~LkpgG~l~i~~~~ 217 (340)
...++. +....+|+|++++.....
T Consensus 260 ---~~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 260 ---NKDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred ---CHHHHHHHHHhcCCCCcEEEEECCC
Confidence 234454 588899999998877543
No 368
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=87.42 E-value=3.2 Score=37.95 Aligned_cols=124 Identities=13% Similarity=0.065 Sum_probs=59.7
Q ss_pred CCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHH-HHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQL-AKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~-~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
++.+|+-+|+|. |......+......+|+.+|.+++-. +.+++ ... .... ..++...-..+|+|+....-.+
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~-~g~---~~~~--~~~~~~~l~~aDvVi~at~~~~ 250 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKE-LGG---NAVP--LDELLELLNEADVVISATGAPH 250 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH-cCC---eEEe--HHHHHHHHhcCCEEEECCCCCc
Confidence 688999999973 44433333333346899999998654 44443 221 2221 1111111234799998765443
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHH
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQK 246 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 246 (340)
. ...+..+.+..+.++.++ .+...|.........-.....++.+++.+..++
T Consensus 251 ~---~~~~~~~~~~~~~~~~~v-iDlavPrdi~~~v~~l~~v~l~~vDdl~~~~~~ 302 (311)
T cd05213 251 Y---AKIVERAMKKRSGKPRLI-VDLAVPRDIEPEVGELEGVRLYTIDDLEEVVEE 302 (311)
T ss_pred h---HHHHHHHHhhCCCCCeEE-EEeCCCCCCchhhccCCCcEEEEHHHhHHHHHH
Confidence 3 333444433332234544 444333211111111001123466676666553
No 369
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=87.42 E-value=3.4 Score=37.95 Aligned_cols=96 Identities=15% Similarity=0.130 Sum_probs=63.7
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCc-EEEEc-CCCC-C-CCCCCCccEEEec
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC-TIIEG-DAED-L-PFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i-~~~~~-d~~~-~-~~~~~~fD~v~~~ 185 (340)
.++.+||-.|+ |.|..+..+++.. +.+|++++.+++..+.+++......+ ..... ++.+ + ....+.+|+|+-.
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~ 228 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDN 228 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEEC
Confidence 57899999986 5778888888885 77899999999888888763332221 11111 2111 0 1112468988853
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.. ...+.++.+.|+++|+++...
T Consensus 229 ~g-------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 229 VG-------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CC-------HHHHHHHHHHhccCcEEEEec
Confidence 21 146788899999999998764
No 370
>PRK08267 short chain dehydrogenase; Provisional
Probab=87.40 E-value=6.1 Score=34.62 Aligned_cols=73 Identities=16% Similarity=0.080 Sum_probs=47.2
Q ss_pred CEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-----CC------CCCcc
Q 019479 115 MRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-----FP------TDYAD 180 (340)
Q Consensus 115 ~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-----~~------~~~fD 180 (340)
+++|-.|++.|. ++..++++ +.+|++++.++..++...+.....++.++.+|+.+.. +. .+++|
T Consensus 2 k~vlItGasg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id 79 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAE--GWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLD 79 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 467777765432 23334443 7899999998887776655443456888899996532 00 34689
Q ss_pred EEEecCccc
Q 019479 181 RYVSAGSIE 189 (340)
Q Consensus 181 ~v~~~~~l~ 189 (340)
+|+.+....
T Consensus 80 ~vi~~ag~~ 88 (260)
T PRK08267 80 VLFNNAGIL 88 (260)
T ss_pred EEEECCCCC
Confidence 998776543
No 371
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.13 E-value=6.3 Score=36.23 Aligned_cols=138 Identities=12% Similarity=0.069 Sum_probs=78.2
Q ss_pred CCEEEEEcCcc--chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--------C--------CCcEEEEcCCCCCCCC
Q 019479 114 NMRVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------L--------KECTIIEGDAEDLPFP 175 (340)
Q Consensus 114 ~~~vLDiGcG~--G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--------~--------~~i~~~~~d~~~~~~~ 175 (340)
-.+|--||+|+ ..++..++.. |.+|+..|.+++.++.++++.. . .++++. .|+++ .
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~---a 80 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA---C 80 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH---H
Confidence 36788999984 3455566655 8999999999988776654211 0 112211 12211 1
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHh------------hHhhhHhhc---------C
Q 019479 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLS------------RFFADVWML---------F 234 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~------------~~~~~~~~~---------~ 234 (340)
-...|+|+-+ +.+..+-...+++++.+.++|+..|.-+.......... .++++.+.. .
T Consensus 81 v~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~ 159 (321)
T PRK07066 81 VADADFIQES-APEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGER 159 (321)
T ss_pred hcCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCC
Confidence 1346888753 44444444588899999999987444333222211111 111111110 1
Q ss_pred C---CHHHHHHHHHHCCCcEEEEE-EeC
Q 019479 235 P---KEEEYIEWFQKAGFKDVKLK-RIG 258 (340)
Q Consensus 235 ~---~~~~~~~~l~~aGF~~v~~~-~~~ 258 (340)
. +.+...+++++.|.+.+.+. +..
T Consensus 160 T~~e~~~~~~~f~~~lGk~pV~v~kd~p 187 (321)
T PRK07066 160 TAPEAVDAAMGIYRALGMRPLHVRKEVP 187 (321)
T ss_pred CCHHHHHHHHHHHHHcCCEeEecCCCCc
Confidence 1 23566788999999988884 443
No 372
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=87.12 E-value=7.4 Score=36.64 Aligned_cols=71 Identities=21% Similarity=0.250 Sum_probs=48.3
Q ss_pred CEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCC---CCCCccEEEecC
Q 019479 115 MRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPF---PTDYADRYVSAG 186 (340)
Q Consensus 115 ~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~---~~~~fD~v~~~~ 186 (340)
++||-|||| -|......+.+....+|+..|.|.+.++.+..... .+++..+.|+.+.+- .-..+|+|+...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-GKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-ccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 579999996 34444333333234899999999999988876543 378899999977431 113459988643
No 373
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=86.98 E-value=6.3 Score=35.69 Aligned_cols=91 Identities=18% Similarity=0.233 Sum_probs=59.2
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
.++.+||-.|+| .|..+..+++.. +.++++++.+++..+.+++. ... .. .+.... .....+|+++-...
T Consensus 154 ~~g~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~~-g~~---~~-~~~~~~-~~~~~~d~vid~~g--- 223 (319)
T cd08242 154 TPGDKVAVLGDGKLGLLIAQVLALT-GPDVVLVGRHSEKLALARRL-GVE---TV-LPDEAE-SEGGGFDVVVEATG--- 223 (319)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHc-CCc---EE-eCcccc-ccCCCCCEEEECCC---
Confidence 467889888764 345555566664 67899999999999888863 211 11 111111 23456999886421
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
....+..+.+.|+++|++++..
T Consensus 224 ---~~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 224 ---SPSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred ---ChHHHHHHHHHhhcCCEEEEEc
Confidence 1346778888999999998743
No 374
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=86.91 E-value=3.4 Score=38.50 Aligned_cols=98 Identities=19% Similarity=0.261 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCc-EEEEcCC--CC-C-CCCCCCccEEEec
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC-TIIEGDA--ED-L-PFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i-~~~~~d~--~~-~-~~~~~~fD~v~~~ 185 (340)
.++.+||-+|+| .|..+..+++..+..+|+++|.++...+.+++... ..+ .....+. .+ + ......+|+|+-.
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga-~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~ 261 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGA-TDFINPKDSDKPVSEVIREMTGGGVDYSFEC 261 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC-CcEeccccccchHHHHHHHHhCCCCCEEEEC
Confidence 578899999885 45666777777633379999999998888865321 111 1111000 00 0 0122458988853
Q ss_pred CcccccCCHHHHHHHHHHhcccC-cEEEEEcc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIG-GKACVIGP 216 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~Lkpg-G~l~i~~~ 216 (340)
.. . ...+....+.|+++ |++++...
T Consensus 262 ~g-----~-~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 262 TG-----N-ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CC-----C-hHHHHHHHHhcccCCCEEEEEcC
Confidence 21 1 24678888899886 99987754
No 375
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=86.90 E-value=8.2 Score=38.42 Aligned_cols=89 Identities=12% Similarity=0.108 Sum_probs=55.7
Q ss_pred CEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----CCCCCccEEEecCcc
Q 019479 115 MRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----FPTDYADRYVSAGSI 188 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~~~l 188 (340)
.+|+=+|||. ++..+++.. .+.+++.+|.+++.++.+++ .+...+.+|..+.. ..-+.+|.+++.
T Consensus 418 ~hiiI~G~G~--~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~g~~~i~GD~~~~~~L~~a~i~~a~~viv~--- 488 (558)
T PRK10669 418 NHALLVGYGR--VGSLLGEKLLAAGIPLVVIETSRTRVDELRE----RGIRAVLGNAANEEIMQLAHLDCARWLLLT--- 488 (558)
T ss_pred CCEEEECCCh--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----CCCeEEEcCCCCHHHHHhcCccccCEEEEE---
Confidence 5677777764 444444432 26789999999999998875 35788999997632 233467876652
Q ss_pred cccCCHH--HHHHHHHHhcccCcEEEEE
Q 019479 189 EYWPDPQ--RGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 189 ~~~~d~~--~~l~~~~~~LkpgG~l~i~ 214 (340)
.+|.+ ..+-.+.+...|..+++..
T Consensus 489 --~~~~~~~~~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 489 --IPNGYEAGEIVASAREKRPDIEIIAR 514 (558)
T ss_pred --cCChHHHHHHHHHHHHHCCCCeEEEE
Confidence 22322 2233445556777766654
No 376
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=86.80 E-value=8.3 Score=35.35 Aligned_cols=93 Identities=12% Similarity=0.063 Sum_probs=60.2
Q ss_pred CEEEEEcC--ccchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCc-EEEEcCCCC-C-CCCCCCccEEEecCcc
Q 019479 115 MRVVDVGG--GTGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKEC-TIIEGDAED-L-PFPTDYADRYVSAGSI 188 (340)
Q Consensus 115 ~~vLDiGc--G~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i-~~~~~d~~~-~-~~~~~~fD~v~~~~~l 188 (340)
.+||-.|+ |.|..+..+++.. +. +|++++.+++..+.+++......+ .....++.+ + ......+|+|+-...
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g- 233 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVG- 233 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCC-
Confidence 78998885 5788888888886 65 899999999888887764332221 111111111 0 112246898885322
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
. ..+.++.+.|+++|+++...
T Consensus 234 ----~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 234 ----G--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred ----c--HHHHHHHHHhccCCEEEEEe
Confidence 1 23578889999999998764
No 377
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=86.45 E-value=3.3 Score=38.22 Aligned_cols=98 Identities=15% Similarity=0.115 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-C-C-CCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-L-P-FPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~-~-~~~~~fD~v~~~~ 186 (340)
.++.+||-.|+| .|..+..+++.. +. +|++++.+++..+.+++.....-+.....++.+ + . ...+.+|+|+-..
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~-G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~ 249 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAA-GASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCA 249 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECC
Confidence 467888888864 456666777775 55 899999999888888653211001111111100 0 0 1223489998542
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
. ....++.+.+.|+++|+++....
T Consensus 250 g------~~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 250 G------VQATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred C------CHHHHHHHHHhccCCCEEEEEcc
Confidence 2 12367888999999999988754
No 378
>PLN02494 adenosylhomocysteinase
Probab=86.43 E-value=4 Score=39.38 Aligned_cols=101 Identities=20% Similarity=0.244 Sum_probs=62.4
Q ss_pred HHHhccccCCCCCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCc
Q 019479 101 RDEALEPADLFDRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYA 179 (340)
Q Consensus 101 ~~~~l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~f 179 (340)
.+.++......-.+++|+-+|+|. |......++.+ +.+|+++|.++.....+... ...+. +.++. -...
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp~r~~eA~~~----G~~vv--~leEa---l~~A 310 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDPICALQALME----GYQVL--TLEDV---VSEA 310 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhhHHHHhc----CCeec--cHHHH---HhhC
Confidence 444444444434789999999994 55555555555 67999999988654444421 22221 22221 1347
Q ss_pred cEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 180 DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 180 D~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
|+|+....-. ..+..+..+.||+|+.|+....
T Consensus 311 DVVI~tTGt~-----~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 311 DIFVTTTGNK-----DIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred CEEEECCCCc-----cchHHHHHhcCCCCCEEEEcCC
Confidence 9998733222 2234778889999999988754
No 379
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=86.15 E-value=3.5 Score=34.43 Aligned_cols=132 Identities=19% Similarity=0.149 Sum_probs=73.9
Q ss_pred EEEEEcCccch--HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC--------------------CCcEEEEcCCCCCC
Q 019479 116 RVVDVGGGTGF--TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------------------KECTIIEGDAEDLP 173 (340)
Q Consensus 116 ~vLDiGcG~G~--~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--------------------~~i~~~~~d~~~~~ 173 (340)
+|.-||+|+=. ++..++.. |.+|+.+|.+++.++.++++... .+++ ...|+++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG-
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH-
Confidence 46678988532 44444444 89999999999998887754210 1233 34555443
Q ss_pred CCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhh------------HhhhHhhc--------
Q 019479 174 FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSR------------FFADVWML-------- 233 (340)
Q Consensus 174 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~------------~~~~~~~~-------- 233 (340)
. ..|+|+=. +.+.++-..++++++.+.+.|+-.|.-.....+...+.. ++.+.+..
T Consensus 77 --~-~adlViEa-i~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~ 152 (180)
T PF02737_consen 77 --V-DADLVIEA-IPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPG 152 (180)
T ss_dssp --C-TESEEEE--S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-
T ss_pred --h-hhheehhh-ccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCC
Confidence 2 47888743 344444446899999999999888877654443221111 11111100
Q ss_pred CC----CHHHHHHHHHHCCCcEEEEE
Q 019479 234 FP----KEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 234 ~~----~~~~~~~~l~~aGF~~v~~~ 255 (340)
.. +.+...+++++.|...+.+.
T Consensus 153 ~~T~~~~~~~~~~~~~~~gk~pv~v~ 178 (180)
T PF02737_consen 153 PKTSPETVDRVRALLRSLGKTPVVVK 178 (180)
T ss_dssp TTS-HHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 11 24667788899999887764
No 380
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=86.12 E-value=5.7 Score=33.32 Aligned_cols=89 Identities=20% Similarity=0.117 Sum_probs=61.8
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
..+.+||-+|.= +|.+...++.. ..+|+.+|+.|.+-...+ ++++|... +.+..+.+|+|+--..+.-
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~r~~lp-----~~v~Fr~~----~~~~~G~~DlivDlTGlGG 111 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFMRGFLP-----NNVKFRNL----LKFIRGEVDLIVDLTGLGG 111 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHHHhcCC-----CCccHhhh----cCCCCCceeEEEeccccCC
Confidence 367899999984 88888777766 689999999987765554 66776554 3345677999998777776
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEccCC
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIGPVY 218 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~~~~ 218 (340)
+. | +..+-+.| +.+++.++..
T Consensus 112 ~~-P-----e~L~~fnp-~vfiVEdP~g 132 (254)
T COG4017 112 IE-P-----EFLAKFNP-KVFIVEDPKG 132 (254)
T ss_pred CC-H-----HHHhccCC-ceEEEECCCC
Confidence 63 2 23334455 5566666543
No 381
>PRK08265 short chain dehydrogenase; Provisional
Probab=85.88 E-value=8.8 Score=33.75 Aligned_cols=74 Identities=16% Similarity=0.145 Sum_probs=45.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-----C-----CCCCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-----F-----PTDYAD 180 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-----~-----~~~~fD 180 (340)
.++++|-.|++.| .+..+++.+ .+.+|+.+|.++...+...+... .++.++.+|+.+.. + .-+..|
T Consensus 5 ~~k~vlItGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id 82 (261)
T PRK08265 5 AGKVAIVTGGATL-IGAAVARALVAAGARVAIVDIDADNGAAVAASLG-ERARFIATDITDDAAIERAVATVVARFGRVD 82 (261)
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-CeeEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 4578888886543 333333332 27899999998875555444332 45778888986532 0 014579
Q ss_pred EEEecCcc
Q 019479 181 RYVSAGSI 188 (340)
Q Consensus 181 ~v~~~~~l 188 (340)
+++.+...
T Consensus 83 ~lv~~ag~ 90 (261)
T PRK08265 83 ILVNLACT 90 (261)
T ss_pred EEEECCCC
Confidence 88876543
No 382
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=85.78 E-value=2.7 Score=34.36 Aligned_cols=113 Identities=17% Similarity=0.250 Sum_probs=64.6
Q ss_pred EEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCC
Q 019479 116 RVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPD 193 (340)
Q Consensus 116 ~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d 193 (340)
+|-=||+|. .+..+++.+ .+.+|++.|.+++..+...+. ++. ...+..+. ....|+|++. +++
T Consensus 3 ~Ig~IGlG~--mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~----g~~-~~~s~~e~---~~~~dvvi~~-----v~~ 67 (163)
T PF03446_consen 3 KIGFIGLGN--MGSAMARNLAKAGYEVTVYDRSPEKAEALAEA----GAE-VADSPAEA---AEQADVVILC-----VPD 67 (163)
T ss_dssp EEEEE--SH--HHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT----TEE-EESSHHHH---HHHBSEEEE------SSS
T ss_pred EEEEEchHH--HHHHHHHHHHhcCCeEEeeccchhhhhhhHHh----hhh-hhhhhhhH---hhcccceEee-----ccc
Confidence 455677763 333333332 378999999999888777653 222 33333332 1235888873 445
Q ss_pred HH---HHHHH--HHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 194 PQ---RGIKE--AYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 194 ~~---~~l~~--~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
.. .++.. +...|++|..++-.....+. +..++.+.+++.|...++.--.+
T Consensus 68 ~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~---------------~~~~~~~~~~~~g~~~vdapV~G 122 (163)
T PF03446_consen 68 DDAVEAVLFGENILAGLRPGKIIIDMSTISPE---------------TSRELAERLAAKGVRYVDAPVSG 122 (163)
T ss_dssp HHHHHHHHHCTTHGGGS-TTEEEEE-SS--HH---------------HHHHHHHHHHHTTEEEEEEEEES
T ss_pred chhhhhhhhhhHHhhccccceEEEecCCcchh---------------hhhhhhhhhhhccceeeeeeeec
Confidence 43 55666 77777776666544433322 35677788999998877776654
No 383
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.64 E-value=1.9 Score=39.18 Aligned_cols=95 Identities=17% Similarity=0.224 Sum_probs=60.5
Q ss_pred CCCCEEEEEcC-ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEc--CCCCC----CCCCCCccEEEe
Q 019479 112 DRNMRVVDVGG-GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEG--DAEDL----PFPTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGc-G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~--d~~~~----~~~~~~fD~v~~ 184 (340)
.++++|--+|. |-|.++..++++. +.+|+++|-+..--+.+-+.+..+. |+.. |-... ...+.-.|-|..
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~kkeea~~~LGAd~--fv~~~~d~d~~~~~~~~~dg~~~~v~~ 256 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKKKEEAIKSLGADV--FVDSTEDPDIMKAIMKTTDGGIDTVSN 256 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchhHHHHHHhcCcce--eEEecCCHHHHHHHHHhhcCcceeeee
Confidence 37777777775 4899999999997 8999999999866666666554332 2211 11111 112233344432
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
. ....+..+.+.||++|.++++...
T Consensus 257 ~--------a~~~~~~~~~~lk~~Gt~V~vg~p 281 (360)
T KOG0023|consen 257 L--------AEHALEPLLGLLKVNGTLVLVGLP 281 (360)
T ss_pred c--------cccchHHHHHHhhcCCEEEEEeCc
Confidence 1 123467788999999999988643
No 384
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=85.57 E-value=3.5 Score=38.46 Aligned_cols=99 Identities=14% Similarity=0.188 Sum_probs=60.7
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEc--CCCC-C-CCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEG--DAED-L-PFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~--d~~~-~-~~~~~~fD~v~~~~ 186 (340)
.++.+||-.|+| .|..+..+++..+..+|+++|.+++..+.+++.-...-+..... ++.+ + ....+.+|+|+-..
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~ 265 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFECT 265 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEECC
Confidence 478899999875 45667777777633389999999999998875321100111110 0100 0 01223588887432
Q ss_pred cccccCCHHHHHHHHHHhcccC-cEEEEEcc
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIG-GKACVIGP 216 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~Lkpg-G~l~i~~~ 216 (340)
. ....+....+.+++| |++++...
T Consensus 266 G------~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 266 G------NIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred C------ChHHHHHHHHHhhcCCCEEEEECc
Confidence 1 134677788899996 99988754
No 385
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=85.52 E-value=16 Score=36.94 Aligned_cols=92 Identities=20% Similarity=0.216 Sum_probs=59.0
Q ss_pred CCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----CCCCCccEEEecCcc
Q 019479 114 NMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----FPTDYADRYVSAGSI 188 (340)
Q Consensus 114 ~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~~~l 188 (340)
..+|+=+|||. |......++. .+.+++.+|.+++.++.+++ .+..++.+|..+.. ..-+..|++++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~-~g~~vvvID~d~~~v~~~~~----~g~~v~~GDat~~~~L~~agi~~A~~vvv~--- 471 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS-SGVKMTVLDHDPDHIETLRK----FGMKVFYGDATRMDLLESAGAAKAEVLINA--- 471 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHh----cCCeEEEEeCCCHHHHHhcCCCcCCEEEEE---
Confidence 46788888874 4433333333 26789999999999999875 35678999997642 233467888763
Q ss_pred cccCCHH--HHHHHHHHhcccCcEEEEEc
Q 019479 189 EYWPDPQ--RGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 189 ~~~~d~~--~~l~~~~~~LkpgG~l~i~~ 215 (340)
.+|.+ ..+-...+.+.|.-.++...
T Consensus 472 --~~d~~~n~~i~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 472 --IDDPQTSLQLVELVKEHFPHLQIIARA 498 (621)
T ss_pred --eCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 34443 23334455566776665543
No 386
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=85.44 E-value=2.9 Score=37.10 Aligned_cols=100 Identities=13% Similarity=0.139 Sum_probs=62.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---CCCCCcEEEEcCCCCCCCC---CCCccEEEecC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK---EPLKECTIIEGDAEDLPFP---TDYADRYVSAG 186 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~---~~~~~i~~~~~d~~~~~~~---~~~fD~v~~~~ 186 (340)
.++.|+-+| -.-..++.++-..-..++..+|+++..++...+. ....|++.+..|+.+ |++ ...||+++. .
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~-plpe~~~~kFDvfiT-D 228 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRN-PLPEDLKRKFDVFIT-D 228 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcc-cChHHHHhhCCeeec-C
Confidence 678899999 3334444444332246899999999888776644 556778889999965 333 357998774 2
Q ss_pred cccccCCHHHHHHHHHHhcccC---cEEEEEc
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIG---GKACVIG 215 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~Lkpg---G~l~i~~ 215 (340)
--+.++....++.+=...||.- |++.++-
T Consensus 229 PpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 229 PPETIKALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred chhhHHHHHHHHhccHHHhcCCCccceEeeee
Confidence 2222222234555555666655 6666653
No 387
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=85.28 E-value=4.7 Score=36.95 Aligned_cols=94 Identities=24% Similarity=0.341 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhCCCCCcEEEEcC---CCCC-C-CCCCCccEEEe
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECTIIEGD---AEDL-P-FPTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~i~~~~~d---~~~~-~-~~~~~fD~v~~ 184 (340)
.++.+||-.|+|. |..+..+++.. +.+ +++++.++...+.+++... . .++..+ ...+ . .....+|+++.
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~~~g~-~--~~~~~~~~~~~~~~~~~~~~~~d~vld 233 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVARELGA-D--DTINPKEEDVEKVRELTEGRGADLVIE 233 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcCC-C--EEecCccccHHHHHHHhCCCCCCEEEE
Confidence 4678899998765 77777778775 555 9999998888887754321 1 111111 1110 1 12234899985
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.. .....+..+.+.|+++|+++...
T Consensus 234 ~~------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 234 AA------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CC------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 41 12346788899999999988775
No 388
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=85.27 E-value=3.8 Score=38.49 Aligned_cols=95 Identities=18% Similarity=0.258 Sum_probs=57.1
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHH-HHHHHHhCCCCCcEEEE-cCCCCCCCCCCCccEEEecCcc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQ-LAKAKQKEPLKECTIIE-GDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~-~~~a~~~~~~~~i~~~~-~d~~~~~~~~~~fD~v~~~~~l 188 (340)
.++.+||-.|+| .|..+..+++.. +.+|+++|.+++. .+.+++. .... ++. .+...+....+.+|+|+-...
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~a~~l-Ga~~--~i~~~~~~~v~~~~~~~D~vid~~G- 251 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKEREAIDRL-GADS--FLVTTDSQKMKEAVGTMDFIIDTVS- 251 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHhHHHHHhC-CCcE--EEcCcCHHHHHHhhCCCcEEEECCC-
Confidence 367889988886 466777778876 6789999887654 4555432 2111 111 010011000124788875321
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
....+..+.+.+++||+++....
T Consensus 252 -----~~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 252 -----AEHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred -----cHHHHHHHHHhhcCCCEEEEEcc
Confidence 22367888899999999987753
No 389
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=84.95 E-value=15 Score=34.81 Aligned_cols=97 Identities=15% Similarity=0.131 Sum_probs=60.6
Q ss_pred CCCCEEEEEc-C-ccchHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhCCCC----CcEEEEcCCC---CC-----CC-
Q 019479 112 DRNMRVVDVG-G-GTGFTTLGIVKHVD--AKNVTILDQSPHQLAKAKQKEPLK----ECTIIEGDAE---DL-----PF- 174 (340)
Q Consensus 112 ~~~~~vLDiG-c-G~G~~~~~l~~~~~--~~~v~g~D~s~~~~~~a~~~~~~~----~i~~~~~d~~---~~-----~~- 174 (340)
+++.+||-+| + +.|..+..+++... ..+|+++|.+++.++.+++..... +......|.. ++ ..
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t 253 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELT 253 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHh
Confidence 4678899887 3 47888888888742 247999999999999998752110 2221111211 11 01
Q ss_pred CCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEE
Q 019479 175 PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 175 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
....+|+|+.... ....+....+.++++|.+++.
T Consensus 254 ~g~g~D~vid~~g------~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 254 GGQGFDDVFVFVP------VPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred CCCCCCEEEEcCC------CHHHHHHHHHHhccCCeEEEE
Confidence 2235898886321 135678889999988876554
No 390
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=84.52 E-value=0.63 Score=41.65 Aligned_cols=100 Identities=26% Similarity=0.356 Sum_probs=67.3
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCc----EEEEcCCCCCCCCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC----TIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i----~~~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
.+..|+|+=+|-|.++..+.=......|+++|.+|..++..++.+...++ ..+.+|-.. +-++...|-|.+.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~-~~~~~~AdrVnLG--- 269 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRN-PKPRLRADRVNLG--- 269 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccc-cCccccchheeec---
Confidence 56899999999999998443333567999999999999998877554443 344555443 3356667877754
Q ss_pred cccCCHHHHHHHHHHhcccC-c-EEEEEccC
Q 019479 189 EYWPDPQRGIKEAYRVLKIG-G-KACVIGPV 217 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~Lkpg-G-~l~i~~~~ 217 (340)
-++.-++-.-.+.++|||. | .+-|.+.+
T Consensus 270 -LlPSse~~W~~A~k~Lk~eggsilHIHenV 299 (351)
T KOG1227|consen 270 -LLPSSEQGWPTAIKALKPEGGSILHIHENV 299 (351)
T ss_pred -cccccccchHHHHHHhhhcCCcEEEEeccc
Confidence 3444455566677888875 4 44444443
No 391
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=84.39 E-value=1.6 Score=33.96 Aligned_cols=90 Identities=20% Similarity=0.146 Sum_probs=46.7
Q ss_pred CCCEEEEEcCccch-HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCC-CCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGTGF-TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFP-TDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~-~~~fD~v~~~~~l~~ 190 (340)
...+|+|||-|.=. .+..+.+. +..|+++|+.+. .++ .++.++..|+.+..+. -...|+|++.. .
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~---~a~-----~g~~~v~DDif~P~l~iY~~a~lIYSiR---P 79 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR---KAP-----EGVNFVVDDIFNPNLEIYEGADLIYSIR---P 79 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S------------STTEE---SSS--HHHHTTEEEEEEES----
T ss_pred CCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc---ccc-----cCcceeeecccCCCHHHhcCCcEEEEeC---C
Confidence 34599999999754 45555555 799999999886 222 5788999999873311 13478888743 2
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
-++.+..+.++++.+ |.-+++....
T Consensus 80 P~El~~~il~lA~~v--~adlii~pL~ 104 (127)
T PF03686_consen 80 PPELQPPILELAKKV--GADLIIRPLG 104 (127)
T ss_dssp -TTSHHHHHHHHHHH--T-EEEEE-BT
T ss_pred ChHHhHHHHHHHHHh--CCCEEEECCC
Confidence 334455555555543 4666666433
No 392
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=84.33 E-value=7.4 Score=36.06 Aligned_cols=97 Identities=23% Similarity=0.277 Sum_probs=59.6
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCc-EEEEcCCC----CC-C-CCCCCccEE
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKEC-TIIEGDAE----DL-P-FPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i-~~~~~d~~----~~-~-~~~~~fD~v 182 (340)
.++.+||-.|+| .|..+..+++.. +. +|++++.+++..+.+++. ....+ .....+.. .+ . .....+|+|
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~~-g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~v 253 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDGSPERLELAREF-GADATIDIDELPDPQRRAIVRDITGGRGADVV 253 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHc-CCCeEEcCcccccHHHHHHHHHHhCCCCCcEE
Confidence 467888888875 455666777775 56 899999988888777643 21111 11111110 00 0 122458988
Q ss_pred EecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 183 VSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 183 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+-... ....+....+.|+++|+++....
T Consensus 254 id~~g------~~~~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 254 IEASG------HPAAVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred EECCC------ChHHHHHHHHHhccCCEEEEEcC
Confidence 85321 12457788899999999987753
No 393
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=84.04 E-value=8.5 Score=39.53 Aligned_cols=138 Identities=16% Similarity=0.070 Sum_probs=84.4
Q ss_pred CCEEEEEcCcc--chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--------------------CCCcEEEEcCCCC
Q 019479 114 NMRVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------------------LKECTIIEGDAED 171 (340)
Q Consensus 114 ~~~vLDiGcG~--G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--------------------~~~i~~~~~d~~~ 171 (340)
-.+|.-||+|+ ..++..++.. .+..|+.+|.+++.++.+.++.. ..++++. .|...
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~-~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~ 386 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATK-AGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRG 386 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHH
Confidence 46799999997 3344555523 38999999999999888764321 0123322 23221
Q ss_pred CCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhh------------HhhhHhhc------
Q 019479 172 LPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSR------------FFADVWML------ 233 (340)
Q Consensus 172 ~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~------------~~~~~~~~------ 233 (340)
-...|+|+=. +.+.++-.+++++++-++++|+..|.-.+...+...+.. ++++.+..
T Consensus 387 ----~~~aDlViEa-v~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv 461 (708)
T PRK11154 387 ----FKHADVVIEA-VFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVI 461 (708)
T ss_pred ----hccCCEEeec-ccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEE
Confidence 1347888743 566565556899999999999988766554433222211 11111110
Q ss_pred ---CC---CHHHHHHHHHHCCCcEEEEEEeC
Q 019479 234 ---FP---KEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 234 ---~~---~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
.. +.+...+++++.|...+.+.+..
T Consensus 462 ~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~p 492 (708)
T PRK11154 462 PHAKTSAETIATTVALAKKQGKTPIVVRDGA 492 (708)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCceEEEeccC
Confidence 01 24566778899999998886643
No 394
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=83.97 E-value=12 Score=33.87 Aligned_cols=90 Identities=17% Similarity=0.121 Sum_probs=55.4
Q ss_pred CCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 113 RNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 113 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.+.+|+-+|.|. |..+...++.. +.+|+++|.++...+.++.. +..+. ++.++...-..+|+|+..-.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~~~~~~~~~~----G~~~~--~~~~l~~~l~~aDiVI~t~p---- 219 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKSAHLARITEM----GLSPF--HLSELAEEVGKIDIIFNTIP---- 219 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHc----CCeee--cHHHHHHHhCCCCEEEECCC----
Confidence 688999999984 44444455554 67999999998877666542 22222 12222111245899997421
Q ss_pred CCHHHHHHHHHHhcccCcEEEEEc
Q 019479 192 PDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
...+-++..+.++||+.++-..
T Consensus 220 --~~~i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 220 --ALVLTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred --hhhhhHHHHHcCCCCcEEEEEc
Confidence 1123356677889988776543
No 395
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=83.82 E-value=5.1 Score=36.69 Aligned_cols=96 Identities=14% Similarity=0.145 Sum_probs=59.8
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCC-cEEEEcCCCC-CCCCCCCccEEEecCcc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE-CTIIEGDAED-LPFPTDYADRYVSAGSI 188 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-i~~~~~d~~~-~~~~~~~fD~v~~~~~l 188 (340)
.++.+||-.|+| .|..+..+++.. +.+++.++.+++..+.+++... .. +.....+... +. ....+|+++....
T Consensus 162 ~~~~~vlV~g~g~iG~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~-~~~~~d~vi~~~g- 237 (333)
T cd08296 162 KPGDLVAVQGIGGLGHLAVQYAAKM-GFRTVAISRGSDKADLARKLGA-HHYIDTSKEDVAEALQ-ELGGAKLILATAP- 237 (333)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHcCC-cEEecCCCccHHHHHH-hcCCCCEEEECCC-
Confidence 467899999875 456667777775 6789999999888888865321 11 1111111110 00 0134788885211
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
....+..+.+.|+++|+++....
T Consensus 238 -----~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 238 -----NAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred -----chHHHHHHHHHcccCCEEEEEec
Confidence 13467888999999999987653
No 396
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=83.72 E-value=7.5 Score=34.24 Aligned_cols=125 Identities=17% Similarity=0.202 Sum_probs=79.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCC------------ceEEEEeCCHHHHHHHHHh-------------C----------
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDA------------KNVTILDQSPHQLAKAKQK-------------E---------- 157 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~------------~~v~g~D~s~~~~~~a~~~-------------~---------- 157 (340)
....|+|+|-|+|.....+.+.++. ..++.++..|.....+... .
T Consensus 58 ~~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~ 137 (252)
T COG4121 58 EILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGC 137 (252)
T ss_pred cceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchh
Confidence 5568999999999987776554422 3466777665332222111 0
Q ss_pred ------CCCCcEEEEcCCCC-CCCCCC---CccEEEecCcccccCCHH----HHHHHHHHhcccCcEEEEEccCCCchhH
Q 019479 158 ------PLKECTIIEGDAED-LPFPTD---YADRYVSAGSIEYWPDPQ----RGIKEAYRVLKIGGKACVIGPVYPTFWL 223 (340)
Q Consensus 158 ------~~~~i~~~~~d~~~-~~~~~~---~fD~v~~~~~l~~~~d~~----~~l~~~~~~LkpgG~l~i~~~~~~~~~~ 223 (340)
...+.....+|+.+ +|..+. .+|+.+.. ++.-..||+ .++..+++..+|||.+.--
T Consensus 138 ~r~~~~g~~~l~l~~gd~~~~~p~~~~~~~~~dAwflD-gFsP~kNP~mW~~e~l~~~a~~~~~~~~l~t~--------- 207 (252)
T COG4121 138 AAAVRHGLLLLGLVIGDAGDGIPPVPRRRPGTDAWFLD-GFRPVKNPEMWEDELLNLMARIPYRDPTLATF--------- 207 (252)
T ss_pred HHhhhcchheeeeeeeehhhcCCcccccccCccEEecC-CccccCChhhccHHHHHHHHhhcCCCCceech---------
Confidence 01234567788844 343333 68988864 344555663 7899999999999998321
Q ss_pred hhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 224 SRFFADVWMLFPKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
-..--.+.-|+++||++.+....+
T Consensus 208 -----------ssA~~vRr~L~~aGF~v~~r~g~g 231 (252)
T COG4121 208 -----------AAAIAVRRRLEQAGFTVEKRTGRG 231 (252)
T ss_pred -----------HHHHHHHHHHHHcCceeeecCCcc
Confidence 123345678999999988775443
No 397
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=83.66 E-value=2.2 Score=33.76 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=45.3
Q ss_pred CCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 113 RNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 113 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.+.+||-+|+| .|......+...+..+++.+.-+.+-.+...+.....++++. +++++...-..+|+|+......+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~--~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAI--PLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEE--EGGGHCHHHHTESEEEE-SSTTST
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCcccccee--eHHHHHHHHhhCCeEEEecCCCCc
Confidence 68899999996 343333333333345699999987655554444433344444 333333223469999987766544
No 398
>PRK10458 DNA cytosine methylase; Provisional
Probab=83.55 E-value=45 Score=32.39 Aligned_cols=129 Identities=12% Similarity=0.067 Sum_probs=75.8
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCCCCC-----------------
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLPFP----------------- 175 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~~~~----------------- 175 (340)
..+++|+=||.|.+..-+-.. +.-.|.++|+++.+.+.-+.+.. .+......+|+.++...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~ 166 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-GGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQH 166 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-CCEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhcc
Confidence 569999999999999998765 33456789999999888887652 23334455666554311
Q ss_pred CCCccEEEecCcccccC------------------CHH-HHHHHHHHhc---ccCcEEEEEccCCCchhHhhHhhhHhhc
Q 019479 176 TDYADRYVSAGSIEYWP------------------DPQ-RGIKEAYRVL---KIGGKACVIGPVYPTFWLSRFFADVWML 233 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~------------------d~~-~~l~~~~~~L---kpgG~l~i~~~~~~~~~~~~~~~~~~~~ 233 (340)
.+.+|+++...-...+. |.. .++.++.|++ +|. +++.+.+..-.. ...
T Consensus 167 ~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk--~fvlENV~gl~s--------~~~ 236 (467)
T PRK10458 167 IPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRPA--IFVLENVKNLKS--------HDK 236 (467)
T ss_pred CCCCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCCC--EEEEeCcHhhhc--------ccc
Confidence 12478888643333221 222 2334444443 443 445544322100 000
Q ss_pred CCCHHHHHHHHHHCCCcEEE
Q 019479 234 FPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 234 ~~~~~~~~~~l~~aGF~~v~ 253 (340)
-.+.+.+.+.|++.||.+..
T Consensus 237 g~~f~~i~~~L~~lGY~v~~ 256 (467)
T PRK10458 237 GKTFRIIMQTLDELGYDVAD 256 (467)
T ss_pred cHHHHHHHHHHHHcCCeEEe
Confidence 11356778889999999753
No 399
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=83.30 E-value=8 Score=35.47 Aligned_cols=96 Identities=20% Similarity=0.274 Sum_probs=58.4
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCcEEEEcCC---CCCCCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECTIIEGDA---EDLPFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~---~~~~~~~~~fD~v~~~~ 186 (340)
.++.+||-.|+|. |..+..+++.. +. +|++++-+++-.+.+++.....-+.....++ .++ ...+.+|+|+..-
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~vd~vld~~ 239 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAA-GASLVIASDPNPYRLELAKKMGADVVINPREEDVVEVKSV-TDGTGVDVVLEMS 239 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCcceeeCcccccHHHHHHH-cCCCCCCEEEECC
Confidence 4677888877753 66777788876 55 7888888887777766532110011111111 111 1234689998532
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
. ....+.++.+.|+++|+++...
T Consensus 240 g------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 240 G------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred C------CHHHHHHHHHHhccCCEEEEEc
Confidence 1 1245778889999999998764
No 400
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=83.17 E-value=16 Score=35.19 Aligned_cols=74 Identities=22% Similarity=0.226 Sum_probs=50.7
Q ss_pred CCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 114 NMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 114 ~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
+++|+-+|-| +|.-+..++.+. +.+|++.|.++.......+....+++.+..+.-.. +....+|+|+.+-.+-.
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~-G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~--~~~~~~d~vV~SPGi~~ 81 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKL-GAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDD--EDLAEFDLVVKSPGIPP 81 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHC-CCeEEEEcCCCCccchhhhhhhccCceeecCccch--hccccCCEEEECCCCCC
Confidence 7899999987 676666665553 79999999888773233333334677887776544 23456899998876653
No 401
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=83.06 E-value=3.2 Score=34.65 Aligned_cols=80 Identities=18% Similarity=0.277 Sum_probs=50.7
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC------CCcEEEEcCCCCCC---------CCCCC
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECTIIEGDAEDLP---------FPTDY 178 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~------~~i~~~~~d~~~~~---------~~~~~ 178 (340)
...|+.+|||--.....+....++.+++-+|. |++++.-++.... .+.+++..|+.+.. +..+.
T Consensus 79 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 79 ARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp ESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 44899999999888888877656789999999 7777666654321 23568999997521 22333
Q ss_pred ccEEEecCcccccCCH
Q 019479 179 ADRYVSAGSIEYWPDP 194 (340)
Q Consensus 179 fD~v~~~~~l~~~~d~ 194 (340)
--++++-.++.+++..
T Consensus 158 ptl~i~Egvl~Yl~~~ 173 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPE 173 (183)
T ss_dssp EEEEEEESSGGGS-HH
T ss_pred CeEEEEcchhhcCCHH
Confidence 4577778888888543
No 402
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=82.75 E-value=22 Score=28.24 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=40.2
Q ss_pred CCCEEEEEcCcc-c-hHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
.+.+|+-+|||. | ..+..+++. +..+++.+|.+++..+...+......+.....|..+. .+.+|+|++.-....
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~-g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~Dvvi~~~~~~~ 93 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAEL-GAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEEL---LAEADLIINTTPVGM 93 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhc---cccCCEEEeCcCCCC
Confidence 568999999963 2 222333332 2368999999887666544332211111222232221 355899998655443
No 403
>PRK10083 putative oxidoreductase; Provisional
Probab=82.70 E-value=8 Score=35.37 Aligned_cols=99 Identities=17% Similarity=0.157 Sum_probs=57.3
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHh-CCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-CCCCCCCccEEEecCcc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-LPFPTDYADRYVSAGSI 188 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~~~~~~~fD~v~~~~~l 188 (340)
.++.+||-.|+| .|..+..+++. .+...++++|.+++..+.+++.....-+.....++.+ +.-....+|+|+-...
T Consensus 159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~g- 237 (339)
T PRK10083 159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIIDAAC- 237 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEECCC-
Confidence 468899999965 34455566664 3334688899999888888764221101111111111 1101112456664221
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
. ...+.+..+.|+++|+++....
T Consensus 238 ----~-~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 238 ----H-PSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred ----C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 2467888999999999988754
No 404
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=82.57 E-value=15 Score=35.06 Aligned_cols=102 Identities=17% Similarity=0.069 Sum_probs=54.6
Q ss_pred CEEEEEcCccch--HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---CCCcE-----E-EEcCCCCCCCCCCCccEEE
Q 019479 115 MRVVDVGGGTGF--TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECT-----I-IEGDAEDLPFPTDYADRYV 183 (340)
Q Consensus 115 ~~vLDiGcG~G~--~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~i~-----~-~~~d~~~~~~~~~~fD~v~ 183 (340)
.+|.-||.|.-. .+..+++. +.+|+++|.+++.++..++... .+.+. . ..+.+.... .....|+|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~-~~~~aDvvi 80 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATT-TPEPADAFL 80 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeec-ccccCCEEE
Confidence 468888888543 34445554 7899999999998886542110 00000 0 000000000 112468887
Q ss_pred ecCccc-------ccCCHHHHHHHHHHhcccCcEEEEEccCCC
Q 019479 184 SAGSIE-------YWPDPQRGIKEAYRVLKIGGKACVIGPVYP 219 (340)
Q Consensus 184 ~~~~l~-------~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~ 219 (340)
.+-.-- ++.....+++.+.+.+++|-.+++.....+
T Consensus 81 i~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~p 123 (415)
T PRK11064 81 IAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPV 123 (415)
T ss_pred EEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCC
Confidence 643221 111223567888888988776666554443
No 405
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=82.36 E-value=8.6 Score=35.28 Aligned_cols=98 Identities=18% Similarity=0.213 Sum_probs=58.7
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-C--CCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-L--PFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~--~~~~~~fD~v~~~~~ 187 (340)
.++.+||-.|+| .|..+..+++..+..+++++|.++...+.+++.....-+.....+... + ......+|+|+-..
T Consensus 165 ~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~- 243 (345)
T cd08286 165 KPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELTDGRGVDVVIEAV- 243 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHhCCCCCCEEEECC-
Confidence 467787777764 345566677776437899999988887777653211101111111100 0 01234589888532
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.. ...+..+.+.|+++|+++...
T Consensus 244 ----g~-~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 244 ----GI-PATFELCQELVAPGGHIANVG 266 (345)
T ss_pred ----CC-HHHHHHHHHhccCCcEEEEec
Confidence 22 235788889999999998764
No 406
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=82.21 E-value=6.7 Score=36.51 Aligned_cols=96 Identities=18% Similarity=0.265 Sum_probs=61.1
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC----C-CCCCCCccEEEec
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED----L-PFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~----~-~~~~~~fD~v~~~ 185 (340)
.++.+||-.|+|. |..+..+++..+...++++|.++...+.+++... . .++..+-.+ + ......+|+|+-.
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~-~--~~i~~~~~~~~~~v~~~~~~~~d~vld~ 261 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGA-T--HVINPKEEDLVAAIREITGGGVDYALDT 261 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC-c--EEecCCCcCHHHHHHHHhCCCCcEEEEC
Confidence 4678898888753 6777778887643379999999988887765321 1 111111111 0 0113458988853
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
..- ...+..+.+.|+++|+++....
T Consensus 262 ~g~------~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 262 TGV------PAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred CCC------cHHHHHHHHHhccCCEEEEeCc
Confidence 211 2357888999999999987754
No 407
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=82.05 E-value=12 Score=35.72 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=56.9
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
-.+++|+-+|+|. |......++.+ +.+|+.+|.++.....+... ..++ .++++. -..+|+|+....
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp~ra~~A~~~----G~~v--~~l~ea---l~~aDVVI~aTG--- 276 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDPICALQAAMD----GFRV--MTMEEA---AELGDIFVTATG--- 276 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCchhhHHHHhc----CCEe--cCHHHH---HhCCCEEEECCC---
Confidence 3789999999985 44444445554 67999999988665544421 2222 222221 135899987431
Q ss_pred cCCHHHHHH-HHHHhcccCcEEEEEccC
Q 019479 191 WPDPQRGIK-EAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 191 ~~d~~~~l~-~~~~~LkpgG~l~i~~~~ 217 (340)
. ..++. +..+.+|+|+.++.....
T Consensus 277 --~-~~vI~~~~~~~mK~GailiNvG~~ 301 (425)
T PRK05476 277 --N-KDVITAEHMEAMKDGAILANIGHF 301 (425)
T ss_pred --C-HHHHHHHHHhcCCCCCEEEEcCCC
Confidence 2 23454 688899999988777543
No 408
>PRK07326 short chain dehydrogenase; Provisional
Probab=81.83 E-value=12 Score=32.11 Aligned_cols=75 Identities=13% Similarity=0.160 Sum_probs=45.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCCC-----CC-----CCCc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLP-----FP-----TDYA 179 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~~-----~~-----~~~f 179 (340)
.+.+||-+|+ +|..+..+++.+ .+.+|++++.++...+...+... ..++.++.+|+.+.. +. -+.+
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 83 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGL 83 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 3578888885 555555544432 26789999988866554443321 145778888886521 00 1358
Q ss_pred cEEEecCcc
Q 019479 180 DRYVSAGSI 188 (340)
Q Consensus 180 D~v~~~~~l 188 (340)
|+|+.+...
T Consensus 84 d~vi~~ag~ 92 (237)
T PRK07326 84 DVLIANAGV 92 (237)
T ss_pred CEEEECCCC
Confidence 988876543
No 409
>PRK08324 short chain dehydrogenase; Validated
Probab=81.35 E-value=15 Score=37.55 Aligned_cols=102 Identities=19% Similarity=0.144 Sum_probs=61.4
Q ss_pred CCCEEEEEcCccc--hH-HHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC-CCcEEEEcCCCCCC-----C-----CCCC
Q 019479 113 RNMRVVDVGGGTG--FT-TLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-KECTIIEGDAEDLP-----F-----PTDY 178 (340)
Q Consensus 113 ~~~~vLDiGcG~G--~~-~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-~~i~~~~~d~~~~~-----~-----~~~~ 178 (340)
.+++||-.|++.| .. +..++++ +.+|+++|.++...+.+.+.... .++.++..|+.+.. + ..+.
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~--Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~ 498 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAE--GACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGG 498 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHC--cCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 4578888886433 32 2333333 67999999998777665544221 46778888886522 1 1236
Q ss_pred ccEEEecCcccccCC-------------------HHHHHHHHHHhccc---CcEEEEEcc
Q 019479 179 ADRYVSAGSIEYWPD-------------------PQRGIKEAYRVLKI---GGKACVIGP 216 (340)
Q Consensus 179 fD~v~~~~~l~~~~d-------------------~~~~l~~~~~~Lkp---gG~l~i~~~ 216 (340)
+|+|+.+........ ...+++.+.+.+++ ||.+++...
T Consensus 499 iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS 558 (681)
T PRK08324 499 VDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS 558 (681)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 899988765432211 12445666777766 688877654
No 410
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=81.22 E-value=24 Score=33.41 Aligned_cols=39 Identities=21% Similarity=0.386 Sum_probs=26.6
Q ss_pred EEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh
Q 019479 116 RVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK 156 (340)
Q Consensus 116 ~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~ 156 (340)
+|--||.| -|.-...+... +.+|+++|.+++.++...+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~--G~~VigvD~d~~kv~~l~~g 41 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ--NHEVVALDILPSRVAMLNDR 41 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCcEEEEECCHHHHHHHHcC
Confidence 46667877 34332233333 68999999999999888763
No 411
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=80.99 E-value=27 Score=34.80 Aligned_cols=76 Identities=16% Similarity=0.062 Sum_probs=45.6
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhC--------C---CCCcEEEEcCCCCCC-C--C
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKE--------P---LKECTIIEGDAEDLP-F--P 175 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~--------~---~~~i~~~~~d~~~~~-~--~ 175 (340)
+.+++||-.|+ +|..+..+++++ .+.+|++++.+....+...+.. . ..++.++.+|+.+.. + .
T Consensus 78 ~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 78 KDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred CCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 36777887776 344444444332 3789999998877654433211 0 135788999997632 1 1
Q ss_pred CCCccEEEecCcc
Q 019479 176 TDYADRYVSAGSI 188 (340)
Q Consensus 176 ~~~fD~v~~~~~l 188 (340)
-+..|+||++...
T Consensus 157 LggiDiVVn~AG~ 169 (576)
T PLN03209 157 LGNASVVICCIGA 169 (576)
T ss_pred hcCCCEEEEcccc
Confidence 2457998876443
No 412
>PLN00203 glutamyl-tRNA reductase
Probab=80.60 E-value=5.7 Score=39.08 Aligned_cols=105 Identities=17% Similarity=0.201 Sum_probs=51.5
Q ss_pred CCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 113 RNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 113 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.+.+|+-||+|. |......+...+..+|+.++.+++..+...+... ++.....++.+....-...|+|++...-.+.
T Consensus 265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~--g~~i~~~~~~dl~~al~~aDVVIsAT~s~~p 342 (519)
T PLN00203 265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP--DVEIIYKPLDEMLACAAEADVVFTSTSSETP 342 (519)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC--CCceEeecHhhHHHHHhcCCEEEEccCCCCC
Confidence 478999999963 3333222223223479999999877666554432 2222222222222122458999986543322
Q ss_pred CCHHHHHHHHHHhccc-CcEEEEEccCCC
Q 019479 192 PDPQRGIKEAYRVLKI-GGKACVIGPVYP 219 (340)
Q Consensus 192 ~d~~~~l~~~~~~Lkp-gG~l~i~~~~~~ 219 (340)
--....++++...-+. +..+++++...|
T Consensus 343 vI~~e~l~~~~~~~~~~~~~~~~IDLAvP 371 (519)
T PLN00203 343 LFLKEHVEALPPASDTVGGKRLFVDISVP 371 (519)
T ss_pred eeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence 1122344444322111 233556554433
No 413
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=80.41 E-value=17 Score=34.16 Aligned_cols=98 Identities=21% Similarity=0.214 Sum_probs=59.7
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCc-EEEEc---CCCC-C-C-CCCCCccEE
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKEC-TIIEG---DAED-L-P-FPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i-~~~~~---d~~~-~-~-~~~~~fD~v 182 (340)
+++.+||-.|+| .|..+..+++.. +. .|++++.+++..+.+++... ..+ ..... +..+ + . .....+|+|
T Consensus 202 ~~g~~VlV~g~g~vG~~ai~lA~~~-G~~~vi~~~~~~~~~~~~~~~g~-~~~v~~~~~~~~~~~~~v~~~~~g~gvDvv 279 (384)
T cd08265 202 RPGAYVVVYGAGPIGLAAIALAKAA-GASKVIAFEISEERRNLAKEMGA-DYVFNPTKMRDCLSGEKVMEVTKGWGADIQ 279 (384)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcCC-CEEEcccccccccHHHHHHHhcCCCCCCEE
Confidence 467888888875 355566677775 45 79999998887777665321 111 11110 1100 0 0 123458988
Q ss_pred EecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 183 VSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 183 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+... .+....+..+.+.|+++|+++....
T Consensus 280 ld~~-----g~~~~~~~~~~~~l~~~G~~v~~g~ 308 (384)
T cd08265 280 VEAA-----GAPPATIPQMEKSIAINGKIVYIGR 308 (384)
T ss_pred EECC-----CCcHHHHHHHHHHHHcCCEEEEECC
Confidence 8542 2334567888999999999987753
No 414
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=80.31 E-value=16 Score=33.19 Aligned_cols=90 Identities=21% Similarity=0.259 Sum_probs=57.6
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
.++.+||-.||| .|..+..+++.. +.+++.++.+++..+.+++. . ++... +.... ..+.+|+++....
T Consensus 166 ~~~~~vlV~g~g~vg~~~~~la~~~-g~~v~~~~~~~~~~~~~~~~-g---~~~~~-~~~~~--~~~~vD~vi~~~~--- 234 (329)
T cd08298 166 KPGQRLGLYGFGASAHLALQIARYQ-GAEVFAFTRSGEHQELAREL-G---ADWAG-DSDDL--PPEPLDAAIIFAP--- 234 (329)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEcCChHHHHHHHHh-C---CcEEe-ccCcc--CCCcccEEEEcCC---
Confidence 467788888775 344555566664 68999999988888887542 2 11111 11111 2345888875321
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
....+..+.+.|+++|+++...
T Consensus 235 ---~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 235 ---VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred ---cHHHHHHHHHHhhcCCEEEEEc
Confidence 1246888999999999998765
No 415
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=80.26 E-value=4.3 Score=36.57 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=41.4
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEE
Q 019479 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 253 (340)
.+.||+|+......|.-.+. +.++++|+|.|++...-.-...-..-... -.+.+.++++++||+.+.
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEtaKfmvdLrKEq~~~------F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETAKFMVDLRKEQLQE------FVKKVKELAKAAGFKPVT 286 (289)
T ss_pred cCCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcchhheeCCHHHHHH------HHHHHHHHHHHCCCcccc
Confidence 35699999876655543333 77789999999887531110000000000 146788999999998653
No 416
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=79.99 E-value=9.6 Score=35.47 Aligned_cols=99 Identities=18% Similarity=0.190 Sum_probs=59.6
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEc--CCCC-C-CCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEG--DAED-L-PFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~--d~~~-~-~~~~~~fD~v~~~~ 186 (340)
.++.+||-.|+| .|..+..+++..+...+++++.+++..+.+++.....-+..... ++.+ + ....+.+|+|+-..
T Consensus 182 ~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~~~~~d~vid~~ 261 (365)
T cd05279 182 TPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMTDGGVDYAFEVI 261 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHHhCCCCcEEEECC
Confidence 467888888875 35566667777533458899988988888865321111111111 1100 0 01134589888532
Q ss_pred cccccCCHHHHHHHHHHhcc-cCcEEEEEcc
Q 019479 187 SIEYWPDPQRGIKEAYRVLK-IGGKACVIGP 216 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~Lk-pgG~l~i~~~ 216 (340)
. . ...+..+.+.|+ ++|+++....
T Consensus 262 g-----~-~~~~~~~~~~l~~~~G~~v~~g~ 286 (365)
T cd05279 262 G-----S-ADTLKQALDATRLGGGTSVVVGV 286 (365)
T ss_pred C-----C-HHHHHHHHHHhccCCCEEEEEec
Confidence 1 1 246778889999 9999987643
No 417
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=79.93 E-value=1.8 Score=42.63 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=60.7
Q ss_pred cCCCCCCCEEEEEcCccchHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC----CC----CCCCC
Q 019479 108 ADLFDRNMRVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED----LP----FPTDY 178 (340)
Q Consensus 108 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~----~~----~~~~~ 178 (340)
+.++.+...|||+||-.|.|.....+..|. .-|+|+|+-|.- ..+++.-.+.|+.. .+ ....+
T Consensus 39 y~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik--------p~~~c~t~v~dIttd~cr~~l~k~l~t~~ 110 (780)
T KOG1098|consen 39 YKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK--------PIPNCDTLVEDITTDECRSKLRKILKTWK 110 (780)
T ss_pred hccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc--------cCCccchhhhhhhHHHHHHHHHHHHHhCC
Confidence 345568889999999999999998888764 679999995521 12444444555532 11 22334
Q ss_pred ccEEEecCccccc-----CCHH-------HHHHHHHHhcccCcEEE
Q 019479 179 ADRYVSAGSIEYW-----PDPQ-------RGIKEAYRVLKIGGKAC 212 (340)
Q Consensus 179 fD~v~~~~~l~~~-----~d~~-------~~l~~~~~~LkpgG~l~ 212 (340)
.|+|+.- ..+.+ .|.- ..|+-+...|..||.++
T Consensus 111 advVLhD-gapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098|consen 111 ADVVLHD-GAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred CcEEeec-CCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence 5777643 22222 1111 45677778899999943
No 418
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=79.87 E-value=2 Score=39.37 Aligned_cols=77 Identities=14% Similarity=0.053 Sum_probs=55.1
Q ss_pred cccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHH-------hC---C--CCCcEEEEcCCCCCC
Q 019479 106 EPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQ-------KE---P--LKECTIIEGDAEDLP 173 (340)
Q Consensus 106 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~-------~~---~--~~~i~~~~~d~~~~~ 173 (340)
.......+|+-|.|-=.|||.+....+.- |+.|+|.|++-.++...+. ++ + ..-+.+..+|+..-+
T Consensus 201 AN~Amv~pGdivyDPFVGTGslLvsaa~F--Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~ 278 (421)
T KOG2671|consen 201 ANQAMVKPGDIVYDPFVGTGSLLVSAAHF--GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPP 278 (421)
T ss_pred hhhhccCCCCEEecCccccCceeeehhhh--cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcc
Confidence 33344468999999999999999887776 8899999998877763321 11 1 112566788887654
Q ss_pred C-CCCCccEEEe
Q 019479 174 F-PTDYADRYVS 184 (340)
Q Consensus 174 ~-~~~~fD~v~~ 184 (340)
+ ....||.|+|
T Consensus 279 ~rsn~~fDaIvc 290 (421)
T KOG2671|consen 279 LRSNLKFDAIVC 290 (421)
T ss_pred hhhcceeeEEEe
Confidence 3 3457999998
No 419
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=79.68 E-value=19 Score=32.73 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=55.8
Q ss_pred CEEEEEcCcc-c-hHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-----CCCcEEEEcCCCCCCCCCCCccEEEecCc
Q 019479 115 MRVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-----LKECTIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
Q Consensus 115 ~~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-----~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 187 (340)
.+|+-+|+|. | .++..+++. +.+|+.++.+++.++..++..+ ............ .+...+.||+|+..-=
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~-~~~~~~~~D~viv~vK 79 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAE-TADAAEPIHRLLLACK 79 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCC-CcccccccCEEEEECC
Confidence 5789999984 4 456666654 6789999998766666654211 001011111011 1112346998887422
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEE
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
-+ +...+++.+...+.++..++..
T Consensus 80 ~~---~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 80 AY---DAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred HH---hHHHHHHHHHhhCCCCCEEEEE
Confidence 22 3457888999999999877655
No 420
>PRK06500 short chain dehydrogenase; Provisional
Probab=79.60 E-value=33 Score=29.51 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=43.5
Q ss_pred CCCEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----------CCCCCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----------FPTDYAD 180 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----------~~~~~fD 180 (340)
++++||-.|++. ..+..+++.+ .+.+|++++.++..++...+... .++.++..|+.+.. -..+..|
T Consensus 5 ~~k~vlItGasg-~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 82 (249)
T PRK06500 5 QGKTALITGGTS-GIGLETARQFLAEGARVAITGRDPASLEAARAELG-ESALVIRADAGDVAAQKALAQALAEAFGRLD 82 (249)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhC-CceEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 356787777654 3333333322 26799999988766655544332 35667778875421 0114589
Q ss_pred EEEecCcc
Q 019479 181 RYVSAGSI 188 (340)
Q Consensus 181 ~v~~~~~l 188 (340)
+++.+...
T Consensus 83 ~vi~~ag~ 90 (249)
T PRK06500 83 AVFINAGV 90 (249)
T ss_pred EEEECCCC
Confidence 88876544
No 421
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=79.47 E-value=2.6 Score=39.31 Aligned_cols=115 Identities=15% Similarity=0.039 Sum_probs=75.0
Q ss_pred HhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHh----------CC--CCCcEEEEcCCC
Q 019479 103 EALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQK----------EP--LKECTIIEGDAE 170 (340)
Q Consensus 103 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~----------~~--~~~i~~~~~d~~ 170 (340)
.+.+.... .++....|+|+|.|......+.......-+|+++....-+.+... ++ ...++.+++++.
T Consensus 183 si~dEl~~-g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 183 SIVDELKL-GPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL 261 (419)
T ss_pred HHHHHhcc-CCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence 33444443 477889999999999998888875445677877765443333221 22 123677888885
Q ss_pred CCC---CCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCC
Q 019479 171 DLP---FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYP 219 (340)
Q Consensus 171 ~~~---~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~ 219 (340)
+.. .-....++|+++++...- +...-+.++..-+++|-+++-..+..+
T Consensus 262 ~~~~v~eI~~eatvi~vNN~~Fdp-~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 262 DPKRVTEIQTEATVIFVNNVAFDP-ELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred CHHHHHHHhhcceEEEEecccCCH-HHHHhhHHHHhhCCCcceEeccccccc
Confidence 522 223457889988877632 223345589999999999987766554
No 422
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=79.41 E-value=4.1 Score=32.78 Aligned_cols=38 Identities=26% Similarity=0.407 Sum_probs=24.3
Q ss_pred EEcCccc--hHHHHHH--HhCCCceEEEEeCCHHHHHHHHHh
Q 019479 119 DVGGGTG--FTTLGIV--KHVDAKNVTILDQSPHQLAKAKQK 156 (340)
Q Consensus 119 DiGcG~G--~~~~~l~--~~~~~~~v~g~D~s~~~~~~a~~~ 156 (340)
|||+..| .....+. ...+..+|+++|+++...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5545443 344678999999999998887766
No 423
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=79.16 E-value=19 Score=32.59 Aligned_cols=115 Identities=10% Similarity=0.027 Sum_probs=61.8
Q ss_pred EEEEEcCccc--hHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCC
Q 019479 116 RVVDVGGGTG--FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPD 193 (340)
Q Consensus 116 ~vLDiGcG~G--~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d 193 (340)
+|-=||+|.- ..+..+++. +.+|++.|.+++.++...+.. .. ...+..++.......|+|++.-.-. .
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~--g~~V~~~dr~~~~~~~l~~~g----~~-~~~s~~~~~~~~~~~dvIi~~vp~~---~ 71 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR--GHDCVGYDHDQDAVKAMKEDR----TT-GVANLRELSQRLSAPRVVWVMVPHG---I 71 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcC----Cc-ccCCHHHHHhhcCCCCEEEEEcCch---H
Confidence 4666888752 244444444 689999999998887776531 11 1122222110112358888742111 2
Q ss_pred HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 194 PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 194 ~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
.+.+++++...|++|-. ++...... ..+..+..+.+++.|...++.-
T Consensus 72 ~~~v~~~l~~~l~~g~i-vid~st~~--------------~~~t~~~~~~~~~~g~~~vda~ 118 (298)
T TIGR00872 72 VDAVLEELAPTLEKGDI-VIDGGNSY--------------YKDSLRRYKLLKEKGIHLLDCG 118 (298)
T ss_pred HHHHHHHHHhhCCCCCE-EEECCCCC--------------cccHHHHHHHHHhcCCeEEecC
Confidence 34677888888887754 34322211 1133444556667776655443
No 424
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=79.04 E-value=12 Score=34.18 Aligned_cols=98 Identities=15% Similarity=0.265 Sum_probs=59.2
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-C--CCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECTIIEGDAED-L--PFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~--~~~~~~fD~v~~~~ 186 (340)
.++.+||-.|+| .|..+..+++.. +.+ |++++.++...+.+++.....-+.....++.+ + ......+|+|+-..
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~-G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~~ 238 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKAS-GAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEMS 238 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEECC
Confidence 467788777765 466667777775 565 88898888887777653211001111111100 0 11234589998642
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
. ....+.++.+.|+++|+++....
T Consensus 239 g------~~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 239 G------APKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred C------CHHHHHHHHHhhcCCCEEEEEcc
Confidence 1 12467888999999999987754
No 425
>PRK07576 short chain dehydrogenase; Provisional
Probab=78.93 E-value=29 Score=30.44 Aligned_cols=73 Identities=26% Similarity=0.272 Sum_probs=43.1
Q ss_pred CCCEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhC--CCCCcEEEEcCCCCCC-----C-----CCCC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKE--PLKECTIIEGDAEDLP-----F-----PTDY 178 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~--~~~~i~~~~~d~~~~~-----~-----~~~~ 178 (340)
+++++|-.|.+ |..+..+++.+ .+.+|+++|.++..++...+.. ...++.++..|+.+.. + ..+.
T Consensus 8 ~~k~ilItGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~ 86 (264)
T PRK07576 8 AGKNVVVVGGT-SGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGP 86 (264)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56788888863 33333333322 3789999999877655443221 1234667788886421 0 1235
Q ss_pred ccEEEecC
Q 019479 179 ADRYVSAG 186 (340)
Q Consensus 179 fD~v~~~~ 186 (340)
.|+++.+.
T Consensus 87 iD~vi~~a 94 (264)
T PRK07576 87 IDVLVSGA 94 (264)
T ss_pred CCEEEECC
Confidence 79998754
No 426
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.92 E-value=22 Score=31.13 Aligned_cols=102 Identities=12% Similarity=0.107 Sum_probs=59.1
Q ss_pred CCCEEEEEcCc-cchHHHHHHHhC--CCceEEEEeCCH--HHHHHHHHhCCCCCcEEEEcCCCCCC----------CCCC
Q 019479 113 RNMRVVDVGGG-TGFTTLGIVKHV--DAKNVTILDQSP--HQLAKAKQKEPLKECTIIEGDAEDLP----------FPTD 177 (340)
Q Consensus 113 ~~~~vLDiGcG-~G~~~~~l~~~~--~~~~v~g~D~s~--~~~~~a~~~~~~~~i~~~~~d~~~~~----------~~~~ 177 (340)
.++++|-.|+| ++..+..+++.+ .+.+|+.++.+. +..+...+... .++.++..|+.+.. ...+
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~i~~~~~~~~~~~g 84 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLP-EPAPVLELDVTNEEHLASLADRVREHVD 84 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcC-CCCcEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 46789999984 344444444432 278899888653 44444433332 25667888886532 0125
Q ss_pred CccEEEecCcccc-------cC--CHH--------------HHHHHHHHhcccCcEEEEEc
Q 019479 178 YADRYVSAGSIEY-------WP--DPQ--------------RGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 178 ~fD~v~~~~~l~~-------~~--d~~--------------~~l~~~~~~LkpgG~l~i~~ 215 (340)
..|+++.+..+.. +. +.+ .+.+.+.+.++++|.++...
T Consensus 85 ~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is 145 (256)
T PRK07889 85 GLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLD 145 (256)
T ss_pred CCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEe
Confidence 6899888665431 11 111 23456667778888876653
No 427
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.54 E-value=14 Score=33.07 Aligned_cols=136 Identities=15% Similarity=0.056 Sum_probs=75.4
Q ss_pred CEEEEEcCcc--chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--------CC------------CCcEEEEcCCCCC
Q 019479 115 MRVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--------PL------------KECTIIEGDAEDL 172 (340)
Q Consensus 115 ~~vLDiGcG~--G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~--------~~------------~~i~~~~~d~~~~ 172 (340)
.+|.-||+|. +.++..++.. +.+|+++|.+++.++.++++. .. .++++ ..|...
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~- 79 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD- 79 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH-
Confidence 3677889984 4455556555 679999999999887544211 00 12221 233321
Q ss_pred CCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhh--------Hhh---------c--
Q 019479 173 PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFAD--------VWM---------L-- 233 (340)
Q Consensus 173 ~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~--------~~~---------~-- 233 (340)
-...|+|+.. +-....-...+++++.+.++|+..+.................. ++. .
T Consensus 80 ---~~~aDlVi~a-v~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~ 155 (282)
T PRK05808 80 ---LKDADLVIEA-ATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIR 155 (282)
T ss_pred ---hccCCeeeec-ccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeC
Confidence 2347888864 2222222247889999999988766333222221111111100 000 0
Q ss_pred --C---CCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 234 --F---PKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 234 --~---~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
. .+.+...++++..|...+.+.+..
T Consensus 156 g~~t~~e~~~~~~~l~~~lGk~pv~~~d~~ 185 (282)
T PRK05808 156 GLATSDATHEAVEALAKKIGKTPVEVKNAP 185 (282)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeeEEecCcc
Confidence 0 124667789999999998885543
No 428
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=78.53 E-value=11 Score=34.60 Aligned_cols=97 Identities=20% Similarity=0.276 Sum_probs=59.9
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCC-cEEEEcCCCC-C--CCCCCCccEEEec
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKE-CTIIEGDAED-L--PFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~-i~~~~~d~~~-~--~~~~~~fD~v~~~ 185 (340)
.++.+||-.|+|. |..+..+++.. +. .+++++.+++..+.+++... .. +.....+..+ + ....+.+|+|+-.
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~lg~-~~~~~~~~~~~~~~~~~~~~~~~~d~v~d~ 239 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHV-GARHVVITDVNEYRLELARKMGA-TRAVNVAKEDLRDVMAELGMTEGFDVGLEM 239 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHhCC-cEEecCccccHHHHHHHhcCCCCCCEEEEC
Confidence 3677888888764 66777778775 55 68888888888777765421 11 0011111100 0 1123458988863
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.. ....+..+.+.|+++|.++....
T Consensus 240 ~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 240 SG------APSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred CC------CHHHHHHHHHHHhcCCEEEEEec
Confidence 22 13467888999999999988754
No 429
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=78.50 E-value=24 Score=30.77 Aligned_cols=74 Identities=14% Similarity=0.173 Sum_probs=42.2
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-----C-----CCCCc
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-----F-----PTDYA 179 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-----~-----~~~~f 179 (340)
.++++|-.|++.|. .+..+++. +.+|+.++.+...-..........++.++..|+.+.. + .-++.
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~--G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 84 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKA--GADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGHI 84 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence 56889988876653 23334443 7889988875421111111111245777888886532 0 12468
Q ss_pred cEEEecCcc
Q 019479 180 DRYVSAGSI 188 (340)
Q Consensus 180 D~v~~~~~l 188 (340)
|+++.+...
T Consensus 85 D~lv~~ag~ 93 (251)
T PRK12481 85 DILINNAGI 93 (251)
T ss_pred CEEEECCCc
Confidence 988876554
No 430
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=78.48 E-value=16 Score=37.63 Aligned_cols=136 Identities=13% Similarity=0.060 Sum_probs=84.4
Q ss_pred CEEEEEcCccc--hHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--------C------------CCcEEEEcCCCCC
Q 019479 115 MRVVDVGGGTG--FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------L------------KECTIIEGDAEDL 172 (340)
Q Consensus 115 ~~vLDiGcG~G--~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--------~------------~~i~~~~~d~~~~ 172 (340)
.+|.-||+|+= ..+..++.. |.+|+.+|.+++.++.+.++.. . .++++. .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK--GVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAGF 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh
Confidence 57999999973 344445554 8999999999999887764321 0 123322 233221
Q ss_pred CCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhh------------HhhhHhhc-------
Q 019479 173 PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSR------------FFADVWML------- 233 (340)
Q Consensus 173 ~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~------------~~~~~~~~------- 233 (340)
...|+|+=. +.+.++-.+++++++.++++|+..|.-.....+...+.. ++++.+..
T Consensus 391 ----~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~ 465 (715)
T PRK11730 391 ----ERVDVVVEA-VVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIR 465 (715)
T ss_pred ----cCCCEEEec-ccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeC
Confidence 347888743 566665556899999999999977766554443222211 11111110
Q ss_pred --CC---CHHHHHHHHHHCCCcEEEEEEeC
Q 019479 234 --FP---KEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 234 --~~---~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
.. +.+...++++..|...+.+.+..
T Consensus 466 g~~T~~~~~~~~~~~~~~lgk~pv~v~d~p 495 (715)
T PRK11730 466 GEKTSDETIATVVAYASKMGKTPIVVNDCP 495 (715)
T ss_pred CCCCCHHHHHHHHHHHHHhCCceEEecCcC
Confidence 01 24667788999999999886654
No 431
>PRK05867 short chain dehydrogenase; Provisional
Probab=77.84 E-value=31 Score=29.90 Aligned_cols=75 Identities=19% Similarity=0.154 Sum_probs=47.4
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCCcEEEEcCCCCCC-----C-----CCC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECTIIEGDAEDLP-----F-----PTD 177 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~i~~~~~d~~~~~-----~-----~~~ 177 (340)
.++++|-.|++.|. .+..++++ +.+|++++.+++..+...+... ..++.++..|+.+.. + .-+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEA--GAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 56889989876542 33444444 7899999998876665544321 235677888886521 0 114
Q ss_pred CccEEEecCccc
Q 019479 178 YADRYVSAGSIE 189 (340)
Q Consensus 178 ~fD~v~~~~~l~ 189 (340)
..|+++.+....
T Consensus 86 ~id~lv~~ag~~ 97 (253)
T PRK05867 86 GIDIAVCNAGII 97 (253)
T ss_pred CCCEEEECCCCC
Confidence 689998776543
No 432
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=77.79 E-value=13 Score=33.47 Aligned_cols=89 Identities=22% Similarity=0.067 Sum_probs=55.1
Q ss_pred CEEEEEcCc--cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEE-cCCCCCCCCCCCccEEEecCccccc
Q 019479 115 MRVVDVGGG--TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIE-GDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 115 ~~vLDiGcG--~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~-~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.+|+=+|.| -|.++..+.+......++|.|.+...++.+.+.. +.... .+... ......|+|+..--+.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg----v~d~~~~~~~~--~~~~~aD~VivavPi~-- 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG----VIDELTVAGLA--EAAAEADLVIVAVPIE-- 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC----cccccccchhh--hhcccCCEEEEeccHH--
Confidence 577888887 3556666666644467899999998888887532 11111 11101 1234479999754333
Q ss_pred CCHHHHHHHHHHhcccCcEEE
Q 019479 192 PDPQRGIKEAYRVLKIGGKAC 212 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~ 212 (340)
....+++++...|++|..+.
T Consensus 76 -~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 76 -ATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred -HHHHHHHHhcccCCCCCEEE
Confidence 33467888888888876654
No 433
>PRK08339 short chain dehydrogenase; Provisional
Probab=77.65 E-value=35 Score=30.01 Aligned_cols=74 Identities=14% Similarity=0.160 Sum_probs=47.2
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhC---CCCCcEEEEcCCCCCC-----C----CCC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---PLKECTIIEGDAEDLP-----F----PTD 177 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~i~~~~~d~~~~~-----~----~~~ 177 (340)
.++++|-.|++.|. .+..++++ +.+|+.+|.++..++.+.+.. ...++.++..|+.+.. + .-+
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARA--GADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 46788888876553 34444444 789999999887666554432 1245778888986532 0 114
Q ss_pred CccEEEecCcc
Q 019479 178 YADRYVSAGSI 188 (340)
Q Consensus 178 ~fD~v~~~~~l 188 (340)
..|+++.+...
T Consensus 85 ~iD~lv~nag~ 95 (263)
T PRK08339 85 EPDIFFFSTGG 95 (263)
T ss_pred CCcEEEECCCC
Confidence 58988876543
No 434
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=77.40 E-value=29 Score=31.41 Aligned_cols=115 Identities=16% Similarity=0.105 Sum_probs=61.9
Q ss_pred EEEEEcCcc-c-hHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCC
Q 019479 116 RVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPD 193 (340)
Q Consensus 116 ~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d 193 (340)
+|-=||+|. | ..+..+++. +.+|++.|.+++..+.+.+. ++.. ..+..+..-.....|+|++.-. .-..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~--g~~v~v~dr~~~~~~~~~~~----g~~~-~~~~~e~~~~~~~~dvvi~~v~--~~~~ 72 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG--GHEVVGYDRNPEAVEALAEE----GATG-ADSLEELVAKLPAPRVVWLMVP--AGEI 72 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHC----CCee-cCCHHHHHhhcCCCCEEEEEec--CCcH
Confidence 466677774 2 244555554 67899999999887776542 2221 2222221101112477776321 1112
Q ss_pred HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEE
Q 019479 194 PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKL 254 (340)
Q Consensus 194 ~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 254 (340)
...++..+...+++|..++-.....+. +..++.+.+++.|...++.
T Consensus 73 ~~~v~~~l~~~l~~g~ivid~st~~~~---------------~~~~~~~~~~~~g~~~~da 118 (301)
T PRK09599 73 TDATIDELAPLLSPGDIVIDGGNSYYK---------------DDIRRAELLAEKGIHFVDV 118 (301)
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCChh---------------HHHHHHHHHHHcCCEEEeC
Confidence 345667788888887544333222211 3445667777888766553
No 435
>PRK07063 short chain dehydrogenase; Provisional
Probab=77.23 E-value=35 Score=29.69 Aligned_cols=74 Identities=14% Similarity=0.143 Sum_probs=47.2
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhC----CCCCcEEEEcCCCCCC-----C-----C
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKE----PLKECTIIEGDAEDLP-----F-----P 175 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~----~~~~i~~~~~d~~~~~-----~-----~ 175 (340)
.++++|-.|++.|. .+..++++ +.+|+.++.+++..+...+.. ...++.++..|+.+.. + .
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~--G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFARE--GAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46789988876542 33334443 789999999887766555442 2245778888986532 0 1
Q ss_pred CCCccEEEecCcc
Q 019479 176 TDYADRYVSAGSI 188 (340)
Q Consensus 176 ~~~fD~v~~~~~l 188 (340)
-+..|+++.+...
T Consensus 84 ~g~id~li~~ag~ 96 (260)
T PRK07063 84 FGPLDVLVNNAGI 96 (260)
T ss_pred hCCCcEEEECCCc
Confidence 1468998876554
No 436
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=77.12 E-value=30 Score=31.08 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=52.6
Q ss_pred EEEEEcCcc-c-hHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-C--CCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 116 RVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-L--KECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 116 ~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-~--~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
+|+-||+|. | .++..+++. +.+|+.+|.+++.++..++... . ........-..+.. ....+|+|++.---.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~d~vila~k~~- 77 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA--GHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPA-ELGPQDLVILAVKAY- 77 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC--CCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChh-HcCCCCEEEEecccc-
Confidence 578899875 2 234444443 6789999997777766654311 0 00000000011111 125689988754322
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEE
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
+...+++.+...+.++..++..
T Consensus 78 --~~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 78 --QLPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred --cHHHHHHHHhhhcCCCCEEEEe
Confidence 4567888888888877666554
No 437
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=76.61 E-value=60 Score=31.11 Aligned_cols=69 Identities=22% Similarity=0.365 Sum_probs=47.1
Q ss_pred CCCEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC----CCCCCccEEEec
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP----FPTDYADRYVSA 185 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~----~~~~~fD~v~~~ 185 (340)
...+|+=+|+| ..+..+++.+ .+.+|+.+|.+++.++..++.. .++.++.+|..+.. ..-..+|.|++.
T Consensus 230 ~~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~--~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 230 PVKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL--PNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC--CCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 46789888885 4444444433 2679999999999888877643 35678889986521 233568888763
No 438
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.60 E-value=36 Score=29.63 Aligned_cols=102 Identities=15% Similarity=0.075 Sum_probs=58.2
Q ss_pred CCCEEEEEcCcc-chHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC--------C--CCCCc
Q 019479 113 RNMRVVDVGGGT-GFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP--------F--PTDYA 179 (340)
Q Consensus 113 ~~~~vLDiGcG~-G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~--------~--~~~~f 179 (340)
.++++|-.|.++ +..+..+++.+ .+.+|+.++.+....+.+++. ...++.++..|+.+.. . .-+..
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i 84 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKL-VDEEDLLVECDVASDESIERAFATIKERVGKI 84 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhh-ccCceeEEeCCCCCHHHHHHHHHHHHHHhCCC
Confidence 467888888763 33333333332 378999888765433333332 2245677888986521 0 12568
Q ss_pred cEEEecCcccc-------cC--CH---H-----------HHHHHHHHhcccCcEEEEEc
Q 019479 180 DRYVSAGSIEY-------WP--DP---Q-----------RGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 180 D~v~~~~~l~~-------~~--d~---~-----------~~l~~~~~~LkpgG~l~i~~ 215 (340)
|+++.+..... +. +. + .+.+.+.+.|+.+|+++.+.
T Consensus 85 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~is 143 (252)
T PRK06079 85 DGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLT 143 (252)
T ss_pred CEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEe
Confidence 99888765432 11 11 1 23455566777788876654
No 439
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=76.18 E-value=28 Score=31.49 Aligned_cols=114 Identities=16% Similarity=0.089 Sum_probs=59.0
Q ss_pred EEEEEcCcc--chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCC
Q 019479 116 RVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPD 193 (340)
Q Consensus 116 ~vLDiGcG~--G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d 193 (340)
+|-=||+|. ...+..+++. +.+|++.|.+++..+.+.+. ++. ...+.++..-.....|+|++.-.-. ..
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~--g~~v~v~dr~~~~~~~~~~~----g~~-~~~s~~~~~~~~~~advVi~~vp~~--~~ 72 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED--GHEVVGYDVNQEAVDVAGKL----GIT-ARHSLEELVSKLEAPRTIWVMVPAG--EV 72 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHC----CCe-ecCCHHHHHHhCCCCCEEEEEecCc--hH
Confidence 355577664 2244444443 67899999998877766532 222 1222222110111257887632111 12
Q ss_pred HHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEE
Q 019479 194 PQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVK 253 (340)
Q Consensus 194 ~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 253 (340)
...++..+...+++|..++-.....+. +..++.+.+++.|...++
T Consensus 73 ~~~v~~~i~~~l~~g~ivid~st~~~~---------------~~~~~~~~~~~~g~~~vd 117 (299)
T PRK12490 73 TESVIKDLYPLLSPGDIVVDGGNSRYK---------------DDLRRAEELAERGIHYVD 117 (299)
T ss_pred HHHHHHHHhccCCCCCEEEECCCCCch---------------hHHHHHHHHHHcCCeEEe
Confidence 245667777778776544433332221 345566677777765444
No 440
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.16 E-value=38 Score=29.64 Aligned_cols=104 Identities=10% Similarity=0.087 Sum_probs=58.6
Q ss_pred CCCEEEEEcCcc-chHHHHHHHhC--CCceEEEEeCC---HHHHHHHHHhCCCCCcEEEEcCCCCCC----------CCC
Q 019479 113 RNMRVVDVGGGT-GFTTLGIVKHV--DAKNVTILDQS---PHQLAKAKQKEPLKECTIIEGDAEDLP----------FPT 176 (340)
Q Consensus 113 ~~~~vLDiGcG~-G~~~~~l~~~~--~~~~v~g~D~s---~~~~~~a~~~~~~~~i~~~~~d~~~~~----------~~~ 176 (340)
.++++|-.|+++ +..+..+++.+ .+.+|+.++.+ ++.++...+.....++.++..|+.+.. -.-
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV 85 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence 468899999762 44444444432 37788888653 233444433332345777888886532 012
Q ss_pred CCccEEEecCcccc-------cC--CHH--------------HHHHHHHHhcccCcEEEEEcc
Q 019479 177 DYADRYVSAGSIEY-------WP--DPQ--------------RGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 177 ~~fD~v~~~~~l~~-------~~--d~~--------------~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+..|+++.+..+.. +. +.+ ...+.+.+.++++|.++.+..
T Consensus 86 g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS 148 (257)
T PRK08594 86 GVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTY 148 (257)
T ss_pred CCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcc
Confidence 56898887654321 11 111 123456667777888876643
No 441
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=76.12 E-value=25 Score=34.50 Aligned_cols=103 Identities=16% Similarity=0.088 Sum_probs=63.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhCC----CceEEEEeCCHHHHHHHHHhC--C---CCCcEEEEcCCCC-CCC-CCCCccE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVD----AKNVTILDQSPHQLAKAKQKE--P---LKECTIIEGDAED-LPF-PTDYADR 181 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~----~~~v~g~D~s~~~~~~a~~~~--~---~~~i~~~~~d~~~-~~~-~~~~fD~ 181 (340)
++..|.|..||+|.+.....+... ...++|.+..+.+...++.+. . .+......+|-.. ... ...+||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 557899999999999876554321 246999999999999888651 1 1122222333322 111 2345787
Q ss_pred EEecCccc------------------------ccCC-HHHHHHHHHHhcccCcEEEEEc
Q 019479 182 YVSAGSIE------------------------YWPD-PQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 182 v~~~~~l~------------------------~~~d-~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
|+++--+. +..+ -..++..+..+|++||+..++-
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC 355 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence 77543211 1111 1267888899999999876654
No 442
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=76.03 E-value=20 Score=37.06 Aligned_cols=137 Identities=16% Similarity=0.033 Sum_probs=84.5
Q ss_pred CCEEEEEcCccc--hHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--------C------------CCcEEEEcCCCC
Q 019479 114 NMRVVDVGGGTG--FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------L------------KECTIIEGDAED 171 (340)
Q Consensus 114 ~~~vLDiGcG~G--~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--------~------------~~i~~~~~d~~~ 171 (340)
-.+|--||+|+= .++..++.. +.+|+.+|.+++.++.+.++.. . .++++. .|...
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 411 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDK--GLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSG 411 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhC--CCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH
Confidence 357999999863 334444544 8999999999999888765421 0 123222 23322
Q ss_pred CCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhh------------HhhhHhhc------
Q 019479 172 LPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSR------------FFADVWML------ 233 (340)
Q Consensus 172 ~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~------------~~~~~~~~------ 233 (340)
-...|+|+= .+.+.++-..++++++-++++|+..|.-.+...+...... ++++.+..
T Consensus 412 ----~~~aDlViE-Av~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv 486 (737)
T TIGR02441 412 ----FKNADMVIE-AVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEII 486 (737)
T ss_pred ----hccCCeehh-hccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEe
Confidence 134688773 3566665556999999999999988876655443222211 11111110
Q ss_pred ---CC---CHHHHHHHHHHCCCcEEEEEEeC
Q 019479 234 ---FP---KEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 234 ---~~---~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
.. +.+...+++++.|...+.+.+..
T Consensus 487 ~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~p 517 (737)
T TIGR02441 487 THDGTSKDTLASAVAVGLKQGKVVIVVKDGP 517 (737)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCeEEEECCcC
Confidence 11 24556778899999988886553
No 443
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=75.99 E-value=4.3 Score=32.55 Aligned_cols=99 Identities=18% Similarity=0.095 Sum_probs=48.9
Q ss_pred CCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-CCC---CCCCccEEEecCccc
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-LPF---PTDYADRYVSAGSIE 189 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~~~---~~~~fD~v~~~~~l~ 189 (340)
..-|||+|-|.|..=-.+.+.+|+.+++++|-.-..---+ ..+.-.++.+|+.+ ++. ...+.-++......+
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~----~P~~~~~ilGdi~~tl~~~~~~g~~a~laHaD~G~g 104 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSS----TPPEEDLILGDIRETLPALARFGAGAALAHADIGTG 104 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG-------GGGEEES-HHHHHHHHHHH-S-EEEEEE----S
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCC----CCchHheeeccHHHHhHHHHhcCCceEEEEeecCCC
Confidence 4679999999999999999999999999999722111000 01223578888854 221 223344444443333
Q ss_pred ccCCHHHH----HHHHHHhcccCcEEEEEcc
Q 019479 190 YWPDPQRG----IKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 190 ~~~d~~~~----l~~~~~~LkpgG~l~i~~~ 216 (340)
+-+..... =.-+..+|.|||.++-..+
T Consensus 105 ~~~~d~a~a~~lspli~~~la~gGi~vS~~p 135 (160)
T PF12692_consen 105 DKEKDDATAAWLSPLIAPVLAPGGIMVSGQP 135 (160)
T ss_dssp -HHHHHHHHHHHHHHHGGGEEEEEEEEESS-
T ss_pred CcchhHHHHHhhhHHHHHHhcCCcEEEeCCc
Confidence 22111111 2345678899998865443
No 444
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=75.95 E-value=14 Score=34.06 Aligned_cols=95 Identities=22% Similarity=0.370 Sum_probs=59.1
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC----C-CCCCCCccEEEec
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED----L-PFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~----~-~~~~~~fD~v~~~ 185 (340)
.++.+||-.|+| .|..+..+++..+...|++++.++...+.+++. ... .++...-.. + ....+.+|+++..
T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~~--~~~~~~~~~~~~~~~~~~~~~~d~vid~ 250 (350)
T cd08240 174 VADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAA-GAD--VVVNGSDPDAAKRIIKAAGGGVDAVIDF 250 (350)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CCc--EEecCCCccHHHHHHHHhCCCCcEEEEC
Confidence 367888888875 466677777775333799999988888888653 211 111111101 0 0112258888853
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.. ....+.++.+.|+++|+++...
T Consensus 251 ~g------~~~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 251 VN------NSATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred CC------CHHHHHHHHHHhhcCCeEEEEC
Confidence 21 1246888999999999998764
No 445
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=75.56 E-value=24 Score=31.20 Aligned_cols=91 Identities=15% Similarity=0.179 Sum_probs=55.8
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEc---CCCCCCCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEG---DAEDLPFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~---d~~~~~~~~~~fD~v~~~~ 186 (340)
.++.+||-.|+ +.|..+..+++.. +.+++.++.++ ..+.+++. ... .++.. +... ......+|+++...
T Consensus 143 ~~~~~vlv~g~~g~~g~~~~~~a~~~-g~~v~~~~~~~-~~~~~~~~-g~~--~~~~~~~~~~~~-~~~~~~~d~v~~~~ 216 (309)
T cd05289 143 KAGQTVLIHGAAGGVGSFAVQLAKAR-GARVIATASAA-NADFLRSL-GAD--EVIDYTKGDFER-AAAPGGVDAVLDTV 216 (309)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHc-CCEEEEEecch-hHHHHHHc-CCC--EEEeCCCCchhh-ccCCCCceEEEECC
Confidence 46789998886 3566667777764 77888888766 66666432 211 11111 1111 12334588887532
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
. . ..+..+.+.++++|+++...
T Consensus 217 ~-----~--~~~~~~~~~l~~~g~~v~~g 238 (309)
T cd05289 217 G-----G--ETLARSLALVKPGGRLVSIA 238 (309)
T ss_pred c-----h--HHHHHHHHHHhcCcEEEEEc
Confidence 1 1 26678889999999988764
No 446
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=75.49 E-value=13 Score=34.41 Aligned_cols=94 Identities=20% Similarity=0.293 Sum_probs=59.4
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC----C-C-CCCCCccEEE
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAK-NVTILDQSPHQLAKAKQKEPLKECTIIEGDAED----L-P-FPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~----~-~-~~~~~fD~v~ 183 (340)
.++.+||-.|+| .|..+..+++.. +. .|++++.++...+.+++. ... .++..+-.. + . .....+|+++
T Consensus 181 ~~g~~vLI~g~g~vG~a~i~lak~~-G~~~Vi~~~~~~~~~~~~~~~-g~~--~vv~~~~~~~~~~l~~~~~~~~vd~vl 256 (363)
T cd08279 181 RPGDTVAVIGCGGVGLNAIQGARIA-GASRIIAVDPVPEKLELARRF-GAT--HTVNASEDDAVEAVRDLTDGRGADYAF 256 (363)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHHh-CCe--EEeCCCCccHHHHHHHHcCCCCCCEEE
Confidence 467888888875 466777778775 55 499999988888877543 211 111111111 0 0 1235589887
Q ss_pred ecCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.... ....+..+.+.|+++|+++...
T Consensus 257 d~~~------~~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 257 EAVG------RAATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred EcCC------ChHHHHHHHHHhhcCCeEEEEe
Confidence 5321 1246788899999999998764
No 447
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=75.49 E-value=13 Score=35.28 Aligned_cols=108 Identities=16% Similarity=0.117 Sum_probs=70.6
Q ss_pred CCCCEEEEEcC-ccc------hHHHHHHHhCCCceEEEEeC-CHHHHHHHHHhCCCCCcEEEEcCCCCCC----------
Q 019479 112 DRNMRVVDVGG-GTG------FTTLGIVKHVDAKNVTILDQ-SPHQLAKAKQKEPLKECTIIEGDAEDLP---------- 173 (340)
Q Consensus 112 ~~~~~vLDiGc-G~G------~~~~~l~~~~~~~~v~g~D~-s~~~~~~a~~~~~~~~i~~~~~d~~~~~---------- 173 (340)
+++..|+=+|- |+| -++.++.++.-..-+++.|. -|.++++.+.....-++.|...+-+.-|
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 35677888875 554 44555555312245778885 5677888877655556676655443333
Q ss_pred CCCCCccEEEecCcccccCCHH--HHHHHHHHhcccCcEEEEEccCCC
Q 019479 174 FPTDYADRYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACVIGPVYP 219 (340)
Q Consensus 174 ~~~~~fD~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~l~i~~~~~~ 219 (340)
+....||+|++...--|--|.. .-++++.++++|.-.|++.+....
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G 225 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG 225 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc
Confidence 2346699999866554443443 678899999999999999876544
No 448
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.40 E-value=40 Score=29.48 Aligned_cols=103 Identities=11% Similarity=-0.002 Sum_probs=56.9
Q ss_pred CCCEEEEEcCccc-hHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhC-CCCCcEEEEcCCCCCC----------CCCCC
Q 019479 113 RNMRVVDVGGGTG-FTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKE-PLKECTIIEGDAEDLP----------FPTDY 178 (340)
Q Consensus 113 ~~~~vLDiGcG~G-~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~-~~~~i~~~~~d~~~~~----------~~~~~ 178 (340)
.++++|-.|+++| ..+..+++++ .+.+|+.+|.++...+.+.+.. ....+.++..|+.+.. -.-+.
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 88 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWGR 88 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcCC
Confidence 5688999998752 4444443332 2788998888754322222111 1123456778876521 01256
Q ss_pred ccEEEecCcccc-------cC--C---HH-----------HHHHHHHHhcccCcEEEEEc
Q 019479 179 ADRYVSAGSIEY-------WP--D---PQ-----------RGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 179 fD~v~~~~~l~~-------~~--d---~~-----------~~l~~~~~~LkpgG~l~i~~ 215 (340)
.|+++.+..... +. + ++ ...+.+...++.+|.++.+.
T Consensus 89 ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~is 148 (258)
T PRK07533 89 LDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMS 148 (258)
T ss_pred CCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 899988765432 11 1 11 23455667777788876654
No 449
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=75.35 E-value=1.5 Score=37.37 Aligned_cols=97 Identities=20% Similarity=0.133 Sum_probs=66.7
Q ss_pred HHHHHhccccCCCCCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---CCCcEEEEcCCCCC---
Q 019479 99 DMRDEALEPADLFDRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECTIIEGDAEDL--- 172 (340)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~i~~~~~d~~~~--- 172 (340)
.+.+..++.+.. .++...+|.--|.|..+..+.+..+...++++|.+|.+-+.|.-... .+.+..+.+.+..+
T Consensus 30 Vm~devl~~lsp-v~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~~~l 108 (303)
T KOG2782|consen 30 VMLDEVLDILSP-VRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYIKSL 108 (303)
T ss_pred eehhhHHHHcCC-CCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhHHHHHH
Confidence 345556666554 37899999999999999999999888999999999988888874321 12233333444332
Q ss_pred ----CCCCCCccEEEecCccccc--CCHHH
Q 019479 173 ----PFPTDYADRYVSAGSIEYW--PDPQR 196 (340)
Q Consensus 173 ----~~~~~~fD~v~~~~~l~~~--~d~~~ 196 (340)
.+.+.++|-|++......+ +++.+
T Consensus 109 ~~~~gl~~~~vDGiLmDlGcSSMQ~d~peR 138 (303)
T KOG2782|consen 109 IADTGLLDVGVDGILMDLGCSSMQVDNPER 138 (303)
T ss_pred HHHhCCCcCCcceEEeecCccccccCCccc
Confidence 2567789999886555433 44443
No 450
>PRK05854 short chain dehydrogenase; Provisional
Probab=75.23 E-value=38 Score=30.76 Aligned_cols=75 Identities=12% Similarity=0.090 Sum_probs=46.8
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHh----CCCCCcEEEEcCCCCCC----------CC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQK----EPLKECTIIEGDAEDLP----------FP 175 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~----~~~~~i~~~~~d~~~~~----------~~ 175 (340)
.++++|-.|++.|. .+..+++. +.+|+.++.+++..+.+.+. ....++.++..|+.+.. ..
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~--G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAA--GAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 46788888876553 23334443 78999999887655544432 22235788889986632 11
Q ss_pred CCCccEEEecCccc
Q 019479 176 TDYADRYVSAGSIE 189 (340)
Q Consensus 176 ~~~fD~v~~~~~l~ 189 (340)
.+..|+++.+....
T Consensus 91 ~~~iD~li~nAG~~ 104 (313)
T PRK05854 91 GRPIHLLINNAGVM 104 (313)
T ss_pred CCCccEEEECCccc
Confidence 24689998875543
No 451
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=75.12 E-value=21 Score=34.56 Aligned_cols=89 Identities=22% Similarity=0.203 Sum_probs=55.7
Q ss_pred CCCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 112 DRNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 112 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
-.+++|+-+|+|. |......++.+ +.+|+++|.++.....+.. .++.+ .++++. -...|+|++...-
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~-Ga~ViV~e~dp~~a~~A~~----~G~~~--~~leel---l~~ADIVI~atGt-- 319 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGF-GARVVVTEIDPICALQAAM----EGYQV--VTLEDV---VETADIFVTATGN-- 319 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhHHHHHh----cCcee--ccHHHH---HhcCCEEEECCCc--
Confidence 3789999999996 44444444444 6799999888765544432 12222 233221 2357999975322
Q ss_pred cCCHHHHH-HHHHHhcccCcEEEEEcc
Q 019479 191 WPDPQRGI-KEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 191 ~~d~~~~l-~~~~~~LkpgG~l~i~~~ 216 (340)
..++ .+....||||++|+-+..
T Consensus 320 ----~~iI~~e~~~~MKpGAiLINvGr 342 (476)
T PTZ00075 320 ----KDIITLEHMRRMKNNAIVGNIGH 342 (476)
T ss_pred ----ccccCHHHHhccCCCcEEEEcCC
Confidence 2233 478889999999876643
No 452
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.93 E-value=13 Score=33.61 Aligned_cols=97 Identities=13% Similarity=0.067 Sum_probs=59.4
Q ss_pred CEEEEEcCcc--chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--------C------------CCcEEEEcCCCCC
Q 019479 115 MRVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------L------------KECTIIEGDAEDL 172 (340)
Q Consensus 115 ~~vLDiGcG~--G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--------~------------~~i~~~~~d~~~~ 172 (340)
.+|--||+|+ +.++..++.. +.+|+..|.+++.++.++++.. . .+++ ...|.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~- 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA--GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGD- 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHH-
Confidence 4788899985 3445555554 8999999999999988654311 0 1122 2233322
Q ss_pred CCCCCCccEEEecCcccccCCHHHHHHHHHHhc-ccCcEEEEEccCCC
Q 019479 173 PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVL-KIGGKACVIGPVYP 219 (340)
Q Consensus 173 ~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~L-kpgG~l~i~~~~~~ 219 (340)
-...|+|+-. +.+..+-.+.++.++.+.+ +|+..+.-.....+
T Consensus 82 ---~~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~ 125 (286)
T PRK07819 82 ---FADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIP 125 (286)
T ss_pred ---hCCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 1346888854 4444434457888888888 67766655444333
No 453
>PRK05872 short chain dehydrogenase; Provisional
Probab=74.58 E-value=43 Score=30.07 Aligned_cols=75 Identities=17% Similarity=0.155 Sum_probs=46.0
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC-CCCcEEEEcCCCCCC----------CCCCC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECTIIEGDAEDLP----------FPTDY 178 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~i~~~~~d~~~~~----------~~~~~ 178 (340)
.+++||-.|++.|. .+..+++. +.+|+.++.+++.++...+... ...+..+..|+.+.. ..-+.
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 85 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHAR--GAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGG 85 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 56788888865542 23333333 7899999998887766554433 223445557876521 01146
Q ss_pred ccEEEecCccc
Q 019479 179 ADRYVSAGSIE 189 (340)
Q Consensus 179 fD~v~~~~~l~ 189 (340)
.|+++.+-...
T Consensus 86 id~vI~nAG~~ 96 (296)
T PRK05872 86 IDVVVANAGIA 96 (296)
T ss_pred CCEEEECCCcC
Confidence 89999876653
No 454
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=74.55 E-value=13 Score=33.83 Aligned_cols=91 Identities=13% Similarity=0.106 Sum_probs=54.4
Q ss_pred CCEEEEE--cC-ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC-----C-CCCCCccEEEe
Q 019479 114 NMRVVDV--GG-GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL-----P-FPTDYADRYVS 184 (340)
Q Consensus 114 ~~~vLDi--Gc-G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~-----~-~~~~~fD~v~~ 184 (340)
+.++|=+ |+ +.|..+..+++.. +.++++++.+++..+.+++. ... .++..+-.++ . .....+|+|+-
T Consensus 143 ~~~vlv~~~g~g~vG~~a~q~a~~~-G~~vi~~~~~~~~~~~~~~~-g~~--~~i~~~~~~~~~~v~~~~~~~~~d~vid 218 (324)
T cd08291 143 GAKAVVHTAAASALGRMLVRLCKAD-GIKVINIVRRKEQVDLLKKI-GAE--YVLNSSDPDFLEDLKELIAKLNATIFFD 218 (324)
T ss_pred CCcEEEEccCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc-CCc--EEEECCCccHHHHHHHHhCCCCCcEEEE
Confidence 4444444 43 4567777778775 77899999999888888763 211 1221111111 0 12235898885
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
... . .......+.|+++|+++...
T Consensus 219 ~~g-----~--~~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 219 AVG-----G--GLTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred CCC-----c--HHHHHHHHhhCCCCEEEEEE
Confidence 322 1 23455678889999998765
No 455
>PLN02702 L-idonate 5-dehydrogenase
Probab=74.34 E-value=23 Score=32.80 Aligned_cols=99 Identities=21% Similarity=0.282 Sum_probs=60.2
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEE--EEcCCCC----C-CCCCCCccEEE
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTI--IEGDAED----L-PFPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~--~~~d~~~----~-~~~~~~fD~v~ 183 (340)
.++.+||-+|+| .|..+..+++..+...++++|.++...+.+++......+.+ ...+..+ + ....+.+|+|+
T Consensus 180 ~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 259 (364)
T PLN02702 180 GPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGIDVSF 259 (364)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCCCEEE
Confidence 467888888875 46667777777533458899998888887775321111111 0011110 0 01234589888
Q ss_pred ecCcccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
-... . ...+..+.+.|+++|+++....
T Consensus 260 d~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 286 (364)
T PLN02702 260 DCVG-----F-NKTMSTALEATRAGGKVCLVGM 286 (364)
T ss_pred ECCC-----C-HHHHHHHHHHHhcCCEEEEEcc
Confidence 5321 1 2467889999999999887653
No 456
>PRK09072 short chain dehydrogenase; Provisional
Probab=74.30 E-value=37 Score=29.64 Aligned_cols=75 Identities=8% Similarity=0.116 Sum_probs=47.1
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-CCCCcEEEEcCCCCCCC---------CCCCc
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-PLKECTIIEGDAEDLPF---------PTDYA 179 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-~~~~i~~~~~d~~~~~~---------~~~~f 179 (340)
++.+||-.|++.|. .+..++++ +.+|++++.++..++...+.. ...++.++..|+.+... ..+..
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i 81 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAA--GARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGI 81 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCC
Confidence 45678888876542 33444444 789999999887666554432 12467788888865320 02457
Q ss_pred cEEEecCccc
Q 019479 180 DRYVSAGSIE 189 (340)
Q Consensus 180 D~v~~~~~l~ 189 (340)
|+++.+....
T Consensus 82 d~lv~~ag~~ 91 (263)
T PRK09072 82 NVLINNAGVN 91 (263)
T ss_pred CEEEECCCCC
Confidence 9998876543
No 457
>PRK06182 short chain dehydrogenase; Validated
Probab=74.23 E-value=46 Score=29.25 Aligned_cols=72 Identities=8% Similarity=0.007 Sum_probs=45.3
Q ss_pred CCEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-----C-----CCCCccE
Q 019479 114 NMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-----F-----PTDYADR 181 (340)
Q Consensus 114 ~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-----~-----~~~~fD~ 181 (340)
+++||-.|++. ..+..+++.+ .+.+|++++.+++.++.... .++.++.+|+.+.. + ..+..|+
T Consensus 3 ~k~vlItGasg-giG~~la~~l~~~G~~V~~~~r~~~~l~~~~~----~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~ 77 (273)
T PRK06182 3 KKVALVTGASS-GIGKATARRLAAQGYTVYGAARRVDKMEDLAS----LGVHPLSLDVTDEASIKAAVDTIIAEEGRIDV 77 (273)
T ss_pred CCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----CCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence 56788777644 4444444432 36899999988776554432 35778888886532 0 1236899
Q ss_pred EEecCcccc
Q 019479 182 YVSAGSIEY 190 (340)
Q Consensus 182 v~~~~~l~~ 190 (340)
++.+.....
T Consensus 78 li~~ag~~~ 86 (273)
T PRK06182 78 LVNNAGYGS 86 (273)
T ss_pred EEECCCcCC
Confidence 998766543
No 458
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=74.22 E-value=14 Score=32.59 Aligned_cols=98 Identities=15% Similarity=0.128 Sum_probs=67.1
Q ss_pred CCCCCCEEEEEc--CccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC--CCCC-CCCccEEEe
Q 019479 110 LFDRNMRVVDVG--GGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED--LPFP-TDYADRYVS 184 (340)
Q Consensus 110 ~~~~~~~vLDiG--cG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~--~~~~-~~~fD~v~~ 184 (340)
..++|.+||--. .|.|..+..+++.. +.++++.-.+.+-.+.|+++-...-|.+...|+.+ ..+. ....|+++-
T Consensus 143 ~vkpGhtVlvhaAAGGVGlll~Ql~ra~-~a~tI~~asTaeK~~~akenG~~h~I~y~~eD~v~~V~kiTngKGVd~vyD 221 (336)
T KOG1197|consen 143 NVKPGHTVLVHAAAGGVGLLLCQLLRAV-GAHTIATASTAEKHEIAKENGAEHPIDYSTEDYVDEVKKITNGKGVDAVYD 221 (336)
T ss_pred CCCCCCEEEEEeccccHHHHHHHHHHhc-CcEEEEEeccHHHHHHHHhcCCcceeeccchhHHHHHHhccCCCCceeeec
Confidence 346788887654 47788888888874 78888888888888999876443345555556532 1233 345888874
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
+-.. ..++.-...|||+|+++-..
T Consensus 222 svG~-------dt~~~sl~~Lk~~G~mVSfG 245 (336)
T KOG1197|consen 222 SVGK-------DTFAKSLAALKPMGKMVSFG 245 (336)
T ss_pred cccc-------hhhHHHHHHhccCceEEEec
Confidence 3222 35677788999999987653
No 459
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=74.05 E-value=24 Score=31.57 Aligned_cols=84 Identities=14% Similarity=0.029 Sum_probs=50.5
Q ss_pred EEEEEcCcc--chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCC
Q 019479 116 RVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPD 193 (340)
Q Consensus 116 ~vLDiGcG~--G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d 193 (340)
+|.=||+|. |.++..+.+. +.+|+++|.+++.++.+.+... +.....+.+ .-...|+|+..--...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~---~~~~~~~~~----~~~~aDlVilavp~~~--- 69 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGL---VDEASTDLS----LLKDCDLVILALPIGL--- 69 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCC---cccccCCHh----HhcCCCEEEEcCCHHH---
Confidence 466788874 4455665554 6799999999988888775421 111111111 1234799987543221
Q ss_pred HHHHHHHHHHhcccCcEE
Q 019479 194 PQRGIKEAYRVLKIGGKA 211 (340)
Q Consensus 194 ~~~~l~~~~~~LkpgG~l 211 (340)
...+++++...++++..+
T Consensus 70 ~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 70 LLPPSEQLIPALPPEAIV 87 (279)
T ss_pred HHHHHHHHHHhCCCCcEE
Confidence 235677787778776444
No 460
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=73.97 E-value=25 Score=30.12 Aligned_cols=98 Identities=14% Similarity=0.051 Sum_probs=57.2
Q ss_pred CCCCEEEEEcCccc----hHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---C-CCcEEEEcCC-CCCCCCCCCccEE
Q 019479 112 DRNMRVVDVGGGTG----FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---L-KECTIIEGDA-EDLPFPTDYADRY 182 (340)
Q Consensus 112 ~~~~~vLDiGcG~G----~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~-~~i~~~~~d~-~~~~~~~~~fD~v 182 (340)
...+.|+++.|+-| ..++..|.+.-+.+++.|-..++.....++... . +-++|+.++. +++-..-...|++
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~ 119 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFV 119 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEE
Confidence 35678899966543 344555555567899998888777666665532 1 3368888885 3321122458988
Q ss_pred EecCcccccCCHHHHHHHHHHhc--ccCcEEEEEc
Q 019479 183 VSAGSIEYWPDPQRGIKEAYRVL--KIGGKACVIG 215 (340)
Q Consensus 183 ~~~~~l~~~~d~~~~l~~~~~~L--kpgG~l~i~~ 215 (340)
+...-. +...+++.+.+ .|.|-+++..
T Consensus 120 vVDc~~------~d~~~~vl~~~~~~~~GaVVV~~ 148 (218)
T PF07279_consen 120 VVDCKR------EDFAARVLRAAKLSPRGAVVVCY 148 (218)
T ss_pred EEeCCc------hhHHHHHHHHhccCCCceEEEEe
Confidence 864322 22333444444 4557666654
No 461
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=73.91 E-value=54 Score=29.91 Aligned_cols=76 Identities=21% Similarity=0.252 Sum_probs=44.9
Q ss_pred CCCEEEEEcCccchHHHHHHHhC----CCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCC---CCCCccEEEec
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV----DAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPF---PTDYADRYVSA 185 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~----~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~---~~~~fD~v~~~ 185 (340)
.+++||-.|+ +|..+..+++.+ .+.+|+++|.++.......+.....++.++.+|+.+... .-..+|+|+..
T Consensus 3 ~~k~vLVTGa-tG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~ 81 (324)
T TIGR03589 3 NNKSILITGG-TGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHA 81 (324)
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEEC
Confidence 3577886665 566555555543 236899998765443333333333568889999976321 11247999876
Q ss_pred Cccc
Q 019479 186 GSIE 189 (340)
Q Consensus 186 ~~l~ 189 (340)
....
T Consensus 82 Ag~~ 85 (324)
T TIGR03589 82 AALK 85 (324)
T ss_pred cccC
Confidence 5543
No 462
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=73.56 E-value=25 Score=36.16 Aligned_cols=138 Identities=12% Similarity=0.058 Sum_probs=85.6
Q ss_pred CCCEEEEEcCccch--HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--------C------------CCcEEEEcCCC
Q 019479 113 RNMRVVDVGGGTGF--TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------L------------KECTIIEGDAE 170 (340)
Q Consensus 113 ~~~~vLDiGcG~G~--~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--------~------------~~i~~~~~d~~ 170 (340)
+-.+|--||+|+=. .+..++.. +.+|+.+|.+++.++.++++.. . .++++. .|..
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 388 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASK--GTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYA 388 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHH
Confidence 34578999999633 44445554 8999999999999888765421 0 122221 2221
Q ss_pred CCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhh------------HhhhHhhc-----
Q 019479 171 DLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSR------------FFADVWML----- 233 (340)
Q Consensus 171 ~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~------------~~~~~~~~----- 233 (340)
. -...|+|+= .+.+.++-.+++++++-++++|+..|.-++...+...... ++++.+..
T Consensus 389 ~----~~~aDlViE-av~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEv 463 (714)
T TIGR02437 389 G----FDNVDIVVE-AVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEV 463 (714)
T ss_pred H----hcCCCEEEE-cCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEee
Confidence 1 134788884 3666666667999999999999988766554443222211 11111110
Q ss_pred ----C---CCHHHHHHHHHHCCCcEEEEEEeC
Q 019479 234 ----F---PKEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 234 ----~---~~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
. .+.+...+++++.|...+.+.+..
T Consensus 464 v~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~p 495 (714)
T TIGR02437 464 IRGEKSSDETIATVVAYASKMGKTPIVVNDCP 495 (714)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEeCCcc
Confidence 1 124566788899999999886553
No 463
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=73.34 E-value=7.6 Score=36.13 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCcc--chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC--CCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP--FPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGcG~--G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~--~~~~~fD~v~~~~~ 187 (340)
.++..||-+|.+. |.++..+++... ...+....|.+.++.+++.-...-+.+...|..+.. .....||+|+-+-.
T Consensus 156 ~~g~~vLv~ggsggVG~~aiQlAk~~~-~~~v~t~~s~e~~~l~k~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVlD~vg 234 (347)
T KOG1198|consen 156 SKGKSVLVLGGSGGVGTAAIQLAKHAG-AIKVVTACSKEKLELVKKLGADEVVDYKDENVVELIKKYTGKGVDVVLDCVG 234 (347)
T ss_pred CCCCeEEEEeCCcHHHHHHHHHHHhcC-CcEEEEEcccchHHHHHHcCCcEeecCCCHHHHHHHHhhcCCCccEEEECCC
Confidence 5788899888865 578888999875 678888888999999987643322333333332221 11557999985433
No 464
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=73.19 E-value=15 Score=33.73 Aligned_cols=94 Identities=17% Similarity=0.201 Sum_probs=59.5
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEc----CCCC-C-CCCCCCccEEEe
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEG----DAED-L-PFPTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~----d~~~-~-~~~~~~fD~v~~ 184 (340)
.++.+||-.|+| .|..+..+++.. +.++++++.+++..+.+++. ... .++.. +... + .+..+.+|+++.
T Consensus 164 ~~~~~vlV~g~g~vg~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~~-g~~--~~i~~~~~~~~~~~~~~~~~~~~d~vi~ 239 (345)
T cd08260 164 KPGEWVAVHGCGGVGLSAVMIASAL-GARVIAVDIDDDKLELAREL-GAV--ATVNASEVEDVAAAVRDLTGGGAHVSVD 239 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHHh-CCC--EEEccccchhHHHHHHHHhCCCCCEEEE
Confidence 467888888874 455666677765 78999999999888888643 211 11111 1110 0 011226898885
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.-. . ...+..+.+.|+++|+++...
T Consensus 240 ~~g-----~-~~~~~~~~~~l~~~g~~i~~g 264 (345)
T cd08260 240 ALG-----I-PETCRNSVASLRKRGRHVQVG 264 (345)
T ss_pred cCC-----C-HHHHHHHHHHhhcCCEEEEeC
Confidence 421 1 346778899999999988764
No 465
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=73.16 E-value=22 Score=31.72 Aligned_cols=93 Identities=23% Similarity=0.282 Sum_probs=58.6
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC-----C-CCCCCccEEE
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL-----P-FPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~-----~-~~~~~fD~v~ 183 (340)
.++.+||-.|| +.|..+..+++.. +.++++++.++...+.+++.. .. .+...+-.+. . .....+|+++
T Consensus 138 ~~~~~vli~g~~~~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g-~~--~~~~~~~~~~~~~i~~~~~~~~~d~v~ 213 (323)
T cd08241 138 QPGETVLVLGAAGGVGLAAVQLAKAL-GARVIAAASSEEKLALARALG-AD--HVIDYRDPDLRERVKALTGGRGVDVVY 213 (323)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHcC-Cc--eeeecCCccHHHHHHHHcCCCCcEEEE
Confidence 46889999998 3566666677764 678999999988888876432 11 1111111110 0 1234589887
Q ss_pred ecCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.+.. ...+..+.+.++++|+++...
T Consensus 214 ~~~g-------~~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 214 DPVG-------GDVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred ECcc-------HHHHHHHHHhhccCCEEEEEc
Confidence 5432 134567788999999987764
No 466
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=73.10 E-value=28 Score=32.29 Aligned_cols=94 Identities=27% Similarity=0.345 Sum_probs=58.7
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC------CCCCCCccEEE
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL------PFPTDYADRYV 183 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~------~~~~~~fD~v~ 183 (340)
.++.+||-.|+| .|..+..+++.. +.+ +++++.+++..+.+++... . .++..+-..+ ......+|+|+
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~-G~~~vi~~~~s~~~~~~~~~~g~-~--~v~~~~~~~~~~~l~~~~~~~~~d~vl 261 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAF-GASPIIAVDVRDEKLAKAKELGA-T--HTVNAAKEDAVAAIREITGGRGVDVVV 261 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHhCC-c--eEecCCcccHHHHHHHHhCCCCCCEEE
Confidence 467788877765 566677777775 455 9999998888887764311 1 1111111110 11235589888
Q ss_pred ecCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 184 ~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.. +... ..+.++.+.|+++|+++...
T Consensus 262 d~-----vg~~-~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 262 EA-----LGKP-ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred Ee-----CCCH-HHHHHHHHHHhcCCEEEEEc
Confidence 53 2121 36788899999999998764
No 467
>PRK12939 short chain dehydrogenase; Provisional
Probab=73.10 E-value=29 Score=29.87 Aligned_cols=75 Identities=15% Similarity=0.096 Sum_probs=45.4
Q ss_pred CCCEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhC--CCCCcEEEEcCCCCCC-----CC-----CCC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKE--PLKECTIIEGDAEDLP-----FP-----TDY 178 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~--~~~~i~~~~~d~~~~~-----~~-----~~~ 178 (340)
++++||-.|+ +|..+..+++.+ .+.++++++.+++.++...+.. ...++.++.+|+.+.. +. -+.
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGG 84 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4678887775 444444444432 2678999998877655444332 1245788889986522 00 146
Q ss_pred ccEEEecCcc
Q 019479 179 ADRYVSAGSI 188 (340)
Q Consensus 179 fD~v~~~~~l 188 (340)
.|+|+.+...
T Consensus 85 id~vi~~ag~ 94 (250)
T PRK12939 85 LDGLVNNAGI 94 (250)
T ss_pred CCEEEECCCC
Confidence 8998876544
No 468
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=73.07 E-value=17 Score=34.74 Aligned_cols=70 Identities=13% Similarity=0.172 Sum_probs=39.4
Q ss_pred CCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEE-cCCCCCCCCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIE-GDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~-~d~~~~~~~~~~fD~v~~~~~l 188 (340)
++.+|+-+|+|. |......+...+..+++.++.++...+...+.... .... .|..+ .-..+|+|+....-
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~---~~~~~~~~~~---~l~~aDvVI~aT~s 252 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG---EAIPLDELPE---ALAEADIVISSTGA 252 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC---cEeeHHHHHH---HhccCCEEEECCCC
Confidence 678999999974 44444444443334899999988665433322221 1211 22211 12358999986543
No 469
>PRK07109 short chain dehydrogenase; Provisional
Probab=72.90 E-value=53 Score=30.16 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=45.2
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--CCCCcEEEEcCCCCCC----C------CCC
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKE--PLKECTIIEGDAEDLP----F------PTD 177 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~--~~~~i~~~~~d~~~~~----~------~~~ 177 (340)
.+++||-.|++.|. .+..++++ +.+|+.++.+++.++...+.. ...++.++.+|+.+.. . .-+
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~--G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARR--GAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 45678888865442 22333443 789999999887666554332 1245777888886522 0 124
Q ss_pred CccEEEecCcc
Q 019479 178 YADRYVSAGSI 188 (340)
Q Consensus 178 ~fD~v~~~~~l 188 (340)
..|+++.+...
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 68998876554
No 470
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.85 E-value=52 Score=29.01 Aligned_cols=75 Identities=9% Similarity=0.069 Sum_probs=43.6
Q ss_pred CCCEEEEEcCccc-h----HHHHHHHhCCCceEEEEeCCHHHHHHHHHhC-CCCCcEEEEcCCCCCC----------CCC
Q 019479 113 RNMRVVDVGGGTG-F----TTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-PLKECTIIEGDAEDLP----------FPT 176 (340)
Q Consensus 113 ~~~~vLDiGcG~G-~----~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-~~~~i~~~~~d~~~~~----------~~~ 176 (340)
.++++|-.|++.| . .+..+++. +.+|+.++.+....+.+.+.. ....+.++..|+.+.. -.-
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~--G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 82 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHRE--GAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVW 82 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHC--CCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhc
Confidence 4678889998652 3 34555554 788988887643223332221 1134556778886521 012
Q ss_pred CCccEEEecCccc
Q 019479 177 DYADRYVSAGSIE 189 (340)
Q Consensus 177 ~~fD~v~~~~~l~ 189 (340)
+.+|+++.+..+.
T Consensus 83 g~iD~linnAg~~ 95 (262)
T PRK07984 83 PKFDGFVHSIGFA 95 (262)
T ss_pred CCCCEEEECCccC
Confidence 4689999876543
No 471
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=72.68 E-value=34 Score=26.62 Aligned_cols=74 Identities=19% Similarity=0.101 Sum_probs=55.4
Q ss_pred CCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHCCCcEEEEE
Q 019479 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKAGFKDVKLK 255 (340)
Q Consensus 176 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 255 (340)
++-.|+|++.+--..- |....|-.+.+.|..+|.+.+..|-.... ...++.++.+....+|+......
T Consensus 43 ddvvD~vllWwR~~Dg-DL~D~LvDa~~~L~d~G~IWvltPK~gr~-----------g~V~~~~I~eaA~taGL~~t~~~ 110 (127)
T PF11253_consen 43 DDVVDVVLLWWRDDDG-DLVDALVDARTNLADDGVIWVLTPKAGRP-----------GHVEPSDIREAAPTAGLVQTKSC 110 (127)
T ss_pred cccccEEEEEEECCcc-hHHHHHHHHHhhhcCCCEEEEEccCCCCC-----------CCCCHHHHHHHHhhcCCeeeeee
Confidence 4558998874433222 45577888889999999999998754321 24478899999999999999998
Q ss_pred EeCCcc
Q 019479 256 RIGPKW 261 (340)
Q Consensus 256 ~~~~~~ 261 (340)
.+...|
T Consensus 111 ~v~~dW 116 (127)
T PF11253_consen 111 AVGDDW 116 (127)
T ss_pred ccCCCc
Confidence 887766
No 472
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.62 E-value=30 Score=29.80 Aligned_cols=73 Identities=14% Similarity=0.021 Sum_probs=47.4
Q ss_pred CCCCEEEEEcCccchHHHHHHHhC--CCceEEEEeCCH-HHHHHHHHhCCCCCcEEEEcCCCCC-----------CCCCC
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSP-HQLAKAKQKEPLKECTIIEGDAEDL-----------PFPTD 177 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~-~~~~~a~~~~~~~~i~~~~~d~~~~-----------~~~~~ 177 (340)
...+.||-.||..|..+..+++.+ .|+.|++.--+- .|-+.+.+ .++.....|+.+. .++++
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~----~gl~~~kLDV~~~~~V~~v~~evr~~~~G 80 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ----FGLKPYKLDVSKPEEVVTVSGEVRANPDG 80 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh----hCCeeEEeccCChHHHHHHHHHHhhCCCC
Confidence 357899999999999888887765 368888876544 34444432 2344455555331 24678
Q ss_pred CccEEEecCcc
Q 019479 178 YADRYVSAGSI 188 (340)
Q Consensus 178 ~fD~v~~~~~l 188 (340)
+.|+.+-+...
T Consensus 81 kld~L~NNAG~ 91 (289)
T KOG1209|consen 81 KLDLLYNNAGQ 91 (289)
T ss_pred ceEEEEcCCCC
Confidence 88888765433
No 473
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=72.61 E-value=23 Score=32.14 Aligned_cols=92 Identities=20% Similarity=0.084 Sum_probs=51.9
Q ss_pred CCEEEEEcCcc-c-hHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 114 NMRVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 114 ~~~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
..+|.=||+|. | .++..+.+.-...+|+++|.+++..+.+++... ......+..+ .-...|+|+..-....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~---~~~~~~~~~~---~~~~aDvViiavp~~~- 78 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGL---GDRVTTSAAE---AVKGADLVILCVPVGA- 78 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCC---CceecCCHHH---HhcCCCEEEECCCHHH-
Confidence 35788899885 3 344444443111489999999988887764311 0111122211 1134788887543321
Q ss_pred CCHHHHHHHHHHhcccCcEEEEE
Q 019479 192 PDPQRGIKEAYRVLKIGGKACVI 214 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i~ 214 (340)
...+++++...+++|..++..
T Consensus 79 --~~~v~~~l~~~l~~~~iv~dv 99 (307)
T PRK07502 79 --SGAVAAEIAPHLKPGAIVTDV 99 (307)
T ss_pred --HHHHHHHHHhhCCCCCEEEeC
Confidence 235566777777887765443
No 474
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=72.23 E-value=1.3 Score=36.52 Aligned_cols=95 Identities=26% Similarity=0.291 Sum_probs=54.2
Q ss_pred CCCEEEEEcCcc-chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC--------------CC----
Q 019479 113 RNMRVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED--------------LP---- 173 (340)
Q Consensus 113 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~--------------~~---- 173 (340)
++.+|+-+|.|. |.-+..++..+ +.+++.+|..+...+..+.... .++..+..+ .+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERPERLRQLESLGA----YFIEVDYEDHLERKDFDKADYYEHPESYE 93 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSHHHHHHHHHTTT----EESEETTTTTTTSB-CCHHHCHHHCCHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCHHHHHhhhcccC----ceEEEcccccccccccchhhhhHHHHHhH
Confidence 568999999994 67778888876 7899999999988877765422 222222110 01
Q ss_pred --C--CCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEE
Q 019479 174 --F--PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKAC 212 (340)
Q Consensus 174 --~--~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~ 212 (340)
+ .-..+|+|+.+...-.-..|.-+-++..+.||||..++
T Consensus 94 ~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIv 136 (168)
T PF01262_consen 94 SNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIV 136 (168)
T ss_dssp HHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEE
T ss_pred HHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEE
Confidence 0 01347888765444333344444566677788765554
No 475
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=72.22 E-value=58 Score=29.69 Aligned_cols=92 Identities=17% Similarity=0.189 Sum_probs=57.1
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC---C-CCCCCCccEEEec
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED---L-PFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~---~-~~~~~~fD~v~~~ 185 (340)
.++.+||-.|+ +.|..+..+++.. +.++++++.+. ..+.+++. ... .+...+-.. . ......+|+|+..
T Consensus 176 ~~g~~vlI~g~~g~ig~~~~~~a~~~-g~~vi~~~~~~-~~~~~~~~-g~~--~~~~~~~~~~~~~~~~~~~~~d~vi~~ 250 (350)
T cd08274 176 GAGETVLVTGASGGVGSALVQLAKRR-GAIVIAVAGAA-KEEAVRAL-GAD--TVILRDAPLLADAKALGGEPVDVVADV 250 (350)
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhc-CCEEEEEeCch-hhHHHHhc-CCe--EEEeCCCccHHHHHhhCCCCCcEEEec
Confidence 47889999997 4567777777775 67888888654 66666542 211 111111000 0 1123458998854
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.. ...+..+.+.|+++|+++...
T Consensus 251 ~g-------~~~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 251 VG-------GPLFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred CC-------HHHHHHHHHHhccCCEEEEec
Confidence 22 135788899999999988664
No 476
>PRK12742 oxidoreductase; Provisional
Probab=72.14 E-value=58 Score=27.70 Aligned_cols=100 Identities=25% Similarity=0.357 Sum_probs=53.1
Q ss_pred CCCEEEEEcCccchHHHHHHHhC--CCceEEEEeC-CHHHHHHHHHhCCCCCcEEEEcCCCCCC-----C-CCCCccEEE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQ-SPHQLAKAKQKEPLKECTIIEGDAEDLP-----F-PTDYADRYV 183 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~-s~~~~~~a~~~~~~~~i~~~~~d~~~~~-----~-~~~~fD~v~ 183 (340)
.+++||-.|++.| .+..+++.+ .+.+|+.++. +++..+...+.. ++.++..|+.+.. . ..+.+|+++
T Consensus 5 ~~k~vlItGasgg-IG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~---~~~~~~~D~~~~~~~~~~~~~~~~id~li 80 (237)
T PRK12742 5 TGKKVLVLGGSRG-IGAAIVRRFVTDGANVRFTYAGSKDAAERLAQET---GATAVQTDSADRDAVIDVVRKSGALDILV 80 (237)
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHh---CCeEEecCCCCHHHHHHHHHHhCCCcEEE
Confidence 4678888887443 333333322 2678877654 344444332221 3456677775421 0 124589988
Q ss_pred ecCcccccCC-----H---H-----------HHHHHHHHhcccCcEEEEEcc
Q 019479 184 SAGSIEYWPD-----P---Q-----------RGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 184 ~~~~l~~~~d-----~---~-----------~~l~~~~~~LkpgG~l~i~~~ 216 (340)
.+.......+ . + ..++++.+.++.+|.++++..
T Consensus 81 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 132 (237)
T PRK12742 81 VNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGS 132 (237)
T ss_pred ECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 7754432211 1 1 223566667777888877643
No 477
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=72.04 E-value=25 Score=32.77 Aligned_cols=103 Identities=22% Similarity=0.297 Sum_probs=61.2
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCC-CCC-CCCCCCccEEEecCcc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDA-EDL-PFPTDYADRYVSAGSI 188 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~-~~~-~~~~~~fD~v~~~~~l 188 (340)
.++.+||-.|+| .|..+..+++..+..+++++|.++...+.+++... .-+.....+. ..+ .+..+.+|+|+-...-
T Consensus 175 ~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~i~~~~~~~~d~v~d~~g~ 253 (375)
T cd08282 175 QPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGA-IPIDFSDGDPVEQILGLEPGGVDRAVDCVGY 253 (375)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC-eEeccCcccHHHHHHHhhCCCCCEEEECCCC
Confidence 467888888886 46677777777533478899999888888775321 1010000111 000 1122458988864332
Q ss_pred ccc-----CCHHHHHHHHHHhcccCcEEEEEc
Q 019479 189 EYW-----PDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 189 ~~~-----~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
... .+....+.++.++|+++|++.+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g 285 (375)
T cd08282 254 EARDRGGEAQPNLVLNQLIRVTRPGGGIGIVG 285 (375)
T ss_pred cccccccccchHHHHHHHHHHhhcCcEEEEEe
Confidence 110 123356888999999999997654
No 478
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=71.76 E-value=21 Score=31.71 Aligned_cols=86 Identities=21% Similarity=0.137 Sum_probs=59.8
Q ss_pred CCCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 112 DRNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 112 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.++..-+|+|.-.|.|+-.+.++ +..|+++|..+-+-.. .....++-...|-..+.......|-.+|.. +
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~sL----~dtg~v~h~r~DGfk~~P~r~~idWmVCDm----V 279 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQSL----MDTGQVTHLREDGFKFRPTRSNIDWMVCDM----V 279 (358)
T ss_pred cCCceeeecccCCCccchhhhhc--ceEEEEeccchhhhhh----hcccceeeeeccCcccccCCCCCceEEeeh----h
Confidence 47899999999999999999998 8999999985533222 233456777777766543345688888743 3
Q ss_pred CCHHHHHHHHHHhccc
Q 019479 192 PDPQRGIKEAYRVLKI 207 (340)
Q Consensus 192 ~d~~~~l~~~~~~Lkp 207 (340)
..+.++-..+...|..
T Consensus 280 EkP~rv~~li~~Wl~n 295 (358)
T COG2933 280 EKPARVAALIAKWLVN 295 (358)
T ss_pred cCcHHHHHHHHHHHHc
Confidence 4555665666666654
No 479
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.76 E-value=74 Score=30.49 Aligned_cols=73 Identities=18% Similarity=0.157 Sum_probs=42.8
Q ss_pred CCCEEEEEcCccchH--HHHHHHhCCCceEEEEeCCH-HHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccc
Q 019479 113 RNMRVVDVGGGTGFT--TLGIVKHVDAKNVTILDQSP-HQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~--~~~l~~~~~~~~v~g~D~s~-~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~ 189 (340)
.+++|+-+|+|.... +..+++. |.+|+++|.+. ..++...+.....++++...|..+. ..+.+|+|+.+....
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~--G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~d~vv~~~g~~ 79 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKL--GAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEE--FLEGVDLVVVSPGVP 79 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchh--HhhcCCEEEECCCCC
Confidence 467899999876333 2223333 78999999975 3232221222223566777776442 124589988866553
No 480
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=71.34 E-value=21 Score=32.16 Aligned_cols=94 Identities=19% Similarity=0.174 Sum_probs=58.0
Q ss_pred CCCCEEEEEcCc--cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcC--CCC-C--CCCCCCccEEEe
Q 019479 112 DRNMRVVDVGGG--TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGD--AED-L--PFPTDYADRYVS 184 (340)
Q Consensus 112 ~~~~~vLDiGcG--~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d--~~~-~--~~~~~~fD~v~~ 184 (340)
.++.+||-.|++ .|..+..++... +.+++.++.++...+.++.... ...+...+ ... + ......+|+++.
T Consensus 165 ~~~~~vlI~g~~~~iG~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 241 (342)
T cd08266 165 RPGETVLVHGAGSGVGSAAIQIAKLF-GATVIATAGSEDKLERAKELGA--DYVIDYRKEDFVREVRELTGKRGVDVVVE 241 (342)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCC--CeEEecCChHHHHHHHHHhCCCCCcEEEE
Confidence 467889988875 566666666664 6789999998887777754311 11111111 000 0 012345898886
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
+..- ..+.++.+.++++|+++...
T Consensus 242 ~~g~-------~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 242 HVGA-------ATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred CCcH-------HHHHHHHHHhhcCCEEEEEe
Confidence 5331 34677788999999988764
No 481
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=71.32 E-value=24 Score=31.70 Aligned_cols=136 Identities=15% Similarity=0.059 Sum_probs=73.9
Q ss_pred CEEEEEcCcc--chHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--------C------------CCcEEEEcCCCCC
Q 019479 115 MRVVDVGGGT--GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------L------------KECTIIEGDAEDL 172 (340)
Q Consensus 115 ~~vLDiGcG~--G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~--------~------------~~i~~~~~d~~~~ 172 (340)
.+|.-||+|. +.++..+++. +.+|+.+|.+++.++.+.++.. . .+++ ...|..+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~- 77 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLS-YSLDLKA- 77 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCcHHH-
Confidence 3677889874 2344455554 7899999999999888764310 0 0122 1223221
Q ss_pred CCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhh------------hHhhc-----C-
Q 019479 173 PFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFA------------DVWML-----F- 234 (340)
Q Consensus 173 ~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~------------~~~~~-----~- 234 (340)
.-...|+|+..-. ....-...++.++.+.++|+..+.+.....+......... +.... .
T Consensus 78 --~~~~aD~Vi~avp-e~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~ 154 (288)
T PRK09260 78 --AVADADLVIEAVP-EKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIR 154 (288)
T ss_pred --hhcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeC
Confidence 1234688886422 2111123667888888888776655443332211111111 00000 0
Q ss_pred ------CCHHHHHHHHHHCCCcEEEEEEe
Q 019479 235 ------PKEEEYIEWFQKAGFKDVKLKRI 257 (340)
Q Consensus 235 ------~~~~~~~~~l~~aGF~~v~~~~~ 257 (340)
.+.+....+++..|-..+.+.+.
T Consensus 155 g~~t~~~~~~~~~~~l~~lg~~~v~v~d~ 183 (288)
T PRK09260 155 GLETSDETVQVAKEVAEQMGKETVVVNEF 183 (288)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 02456778889999988877654
No 482
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=71.03 E-value=31 Score=30.83 Aligned_cols=95 Identities=24% Similarity=0.360 Sum_probs=61.5
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC-C-CCCCCCccEEEecCc
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED-L-PFPTDYADRYVSAGS 187 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~-~-~~~~~~fD~v~~~~~ 187 (340)
.++.+||-.|+ +.|..+..+++.. +.+|++++.+++..+.+++. ....+-....++.+ + .. ...+|+++-...
T Consensus 141 ~~g~~vlV~ga~g~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~i~~~-~~~~d~vl~~~~ 217 (320)
T cd08243 141 QPGDTLLIRGGTSSVGLAALKLAKAL-GATVTATTRSPERAALLKEL-GADEVVIDDGAIAEQLRAA-PGGFDKVLELVG 217 (320)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc-CCcEEEecCccHHHHHHHh-CCCceEEEECCC
Confidence 46789998886 5777888888875 68899999988888877543 21111100111100 0 12 356898885322
Q ss_pred ccccCCHHHHHHHHHHhcccCcEEEEEcc
Q 019479 188 IEYWPDPQRGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 188 l~~~~d~~~~l~~~~~~LkpgG~l~i~~~ 216 (340)
. ..+.++.+.|+++|+++....
T Consensus 218 -----~--~~~~~~~~~l~~~g~~v~~g~ 239 (320)
T cd08243 218 -----T--ATLKDSLRHLRPGGIVCMTGL 239 (320)
T ss_pred -----h--HHHHHHHHHhccCCEEEEEcc
Confidence 1 357888999999999987653
No 483
>PRK06181 short chain dehydrogenase; Provisional
Probab=70.99 E-value=37 Score=29.56 Aligned_cols=73 Identities=15% Similarity=0.125 Sum_probs=42.6
Q ss_pred CEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhC--CCCCcEEEEcCCCCCC-----C-----CCCCcc
Q 019479 115 MRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKE--PLKECTIIEGDAEDLP-----F-----PTDYAD 180 (340)
Q Consensus 115 ~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~--~~~~i~~~~~d~~~~~-----~-----~~~~fD 180 (340)
.+||-.|+. |..+..+++.+ .+.+|++++.++...+...+.. ...++.++..|+.+.. + .-+..|
T Consensus 2 ~~vlVtGas-g~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 80 (263)
T PRK06181 2 KVVIITGAS-EGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGID 80 (263)
T ss_pred CEEEEecCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 467766653 44444443322 3679999999876655443321 1245777888886532 0 013579
Q ss_pred EEEecCcc
Q 019479 181 RYVSAGSI 188 (340)
Q Consensus 181 ~v~~~~~l 188 (340)
+|+.+...
T Consensus 81 ~vi~~ag~ 88 (263)
T PRK06181 81 ILVNNAGI 88 (263)
T ss_pred EEEECCCc
Confidence 99877544
No 484
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=70.98 E-value=50 Score=29.35 Aligned_cols=89 Identities=18% Similarity=0.250 Sum_probs=59.9
Q ss_pred CCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccc
Q 019479 113 RNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
Q Consensus 113 ~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 190 (340)
++.+|+=.|+ +.|..+..+++.. +.++++++.+++..+.+++ .... ..+ .+..++ .++.+|+++-...
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~-~g~~--~~~-~~~~~~--~~~~~d~vl~~~g--- 201 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALA-GAHVVAVVGSPARAEGLRE-LGAA--EVV-VGGSEL--SGAPVDLVVDSVG--- 201 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH-cCCc--EEE-eccccc--cCCCceEEEECCC---
Confidence 4788988887 4677777777775 6789999998888888876 3222 111 111111 2246898885321
Q ss_pred cCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 191 WPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 191 ~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
. ..+....+.|+++|+++...
T Consensus 202 --~--~~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 202 --G--PQLARALELLAPGGTVVSVG 222 (305)
T ss_pred --c--HHHHHHHHHhcCCCEEEEEe
Confidence 1 25788899999999998764
No 485
>PRK06484 short chain dehydrogenase; Validated
Probab=70.98 E-value=51 Score=32.26 Aligned_cols=101 Identities=19% Similarity=0.226 Sum_probs=61.1
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC-----C-----CCCCc
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP-----F-----PTDYA 179 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~-----~-----~~~~f 179 (340)
.++++|-.|++.|. .+..++++ +.+|+.++.++..++...+... .++..+..|+.+.. + .-+..
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 344 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAA--GDRLLIIDRDAEGAKKLAEALG-DEHLSVQADITDEAAVESAFAQIQARWGRL 344 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhC-CceeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 56788888876652 33444444 6899999998877766655433 34556778886532 0 11468
Q ss_pred cEEEecCcccc-cC-----C---HH-----------HHHHHHHHhcccCcEEEEEcc
Q 019479 180 DRYVSAGSIEY-WP-----D---PQ-----------RGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 180 D~v~~~~~l~~-~~-----d---~~-----------~~l~~~~~~LkpgG~l~i~~~ 216 (340)
|+++.+..... .. + ++ .+.+.+...++.+|.++++..
T Consensus 345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS 401 (520)
T PRK06484 345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGS 401 (520)
T ss_pred CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECc
Confidence 99987655421 11 1 11 234555666677788877643
No 486
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=70.77 E-value=57 Score=26.69 Aligned_cols=95 Identities=14% Similarity=0.046 Sum_probs=56.7
Q ss_pred CCCEEEEEcCccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCC---CC-CCCCCccEEEecCcc
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAED---LP-FPTDYADRYVSAGSI 188 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~---~~-~~~~~fD~v~~~~~l 188 (340)
...+|+-|||=+-.....- ...+..+++.+|++...-... .+ .|+.-|... ++ .-.++||+|++---+
T Consensus 25 ~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~~~------~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DPPF 96 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQFG------GD-EFVFYDYNEPEELPEELKGKFDVVVIDPPF 96 (162)
T ss_pred CCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHhcC------Cc-ceEECCCCChhhhhhhcCCCceEEEECCCC
Confidence 5689999999875554432 233578999999976443321 12 466666643 22 114689999985444
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
-.-+-.......+.-++|+++++++..
T Consensus 97 l~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 97 LSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred CCHHHHHHHHHHHHHHhCccceEEEec
Confidence 111111234455555668888988774
No 487
>PRK07806 short chain dehydrogenase; Provisional
Probab=70.37 E-value=66 Score=27.63 Aligned_cols=102 Identities=12% Similarity=0.056 Sum_probs=55.0
Q ss_pred CCCEEEEEcCccchHHHHHHHhC--CCceEEEEeCCH-HHHHHHHHhC--CCCCcEEEEcCCCCCC-----CC-----CC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSP-HQLAKAKQKE--PLKECTIIEGDAEDLP-----FP-----TD 177 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~-~~~~~a~~~~--~~~~i~~~~~d~~~~~-----~~-----~~ 177 (340)
.++++|-.|+.. ..+..+++.+ .+.+|++++.+. ...+...... ...++.++.+|+.+.. +. -+
T Consensus 5 ~~k~vlItGasg-giG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (248)
T PRK07806 5 PGKTALVTGSSR-GIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFG 83 (248)
T ss_pred CCcEEEEECCCC-cHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 457888888643 3333333322 367888887653 2222222111 1235677888886522 00 13
Q ss_pred CccEEEecCcccccC--C-----------HHHHHHHHHHhcccCcEEEEEc
Q 019479 178 YADRYVSAGSIEYWP--D-----------PQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 178 ~fD~v~~~~~l~~~~--d-----------~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
..|+++.+....... + ...+++.+.+.++.+|++++..
T Consensus 84 ~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 84 GLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 578888655332110 1 1256677777776677777654
No 488
>PRK06701 short chain dehydrogenase; Provisional
Probab=70.37 E-value=32 Score=30.80 Aligned_cols=102 Identities=23% Similarity=0.334 Sum_probs=56.1
Q ss_pred CCCEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHH-HHHHHHHhC--CCCCcEEEEcCCCCCC-----CC-----C
Q 019479 113 RNMRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPH-QLAKAKQKE--PLKECTIIEGDAEDLP-----FP-----T 176 (340)
Q Consensus 113 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~-~~~~a~~~~--~~~~i~~~~~d~~~~~-----~~-----~ 176 (340)
++++||-.|++.|. .+..++++ +.+|+.++.++. ..+...... ...++.++.+|+.+.. +. -
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~--G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKE--GADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46788888875543 33334443 788988887642 222222221 1235778888886522 10 1
Q ss_pred CCccEEEecCcccc----cCC--HH--------------HHHHHHHHhcccCcEEEEEcc
Q 019479 177 DYADRYVSAGSIEY----WPD--PQ--------------RGIKEAYRVLKIGGKACVIGP 216 (340)
Q Consensus 177 ~~fD~v~~~~~l~~----~~d--~~--------------~~l~~~~~~LkpgG~l~i~~~ 216 (340)
+..|+++.+..... +.+ .+ .+++.+.+.++++|.++++..
T Consensus 123 ~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 123 GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 35798886654321 111 11 345566666777788776643
No 489
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=70.28 E-value=20 Score=32.45 Aligned_cols=96 Identities=18% Similarity=0.151 Sum_probs=60.7
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCC-cEEEEcCCCC-C-CCCCCCccEEEecC
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE-CTIIEGDAED-L-PFPTDYADRYVSAG 186 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-i~~~~~d~~~-~-~~~~~~fD~v~~~~ 186 (340)
.++.+||=.|+ +.|..+..+++.. +.++++++.++...+.+++...... +.....++.. + ....+.+|+++-..
T Consensus 144 ~~~~~vlI~g~~g~ig~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~d~vi~~~ 222 (329)
T cd05288 144 KPGETVVVSAAAGAVGSVVGQIAKLL-GARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAAPDGIDVYFDNV 222 (329)
T ss_pred CCCCEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhccCCceEEEEcc
Confidence 46788988884 4677778888875 6799999998888888876332211 1111111100 0 01124589888532
Q ss_pred cccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 187 SIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 187 ~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
. ...++...+.|+++|+++...
T Consensus 223 g-------~~~~~~~~~~l~~~G~~v~~g 244 (329)
T cd05288 223 G-------GEILDAALTLLNKGGRIALCG 244 (329)
T ss_pred h-------HHHHHHHHHhcCCCceEEEEe
Confidence 1 136788899999999988664
No 490
>PRK08177 short chain dehydrogenase; Provisional
Probab=70.20 E-value=48 Score=28.15 Aligned_cols=69 Identities=16% Similarity=0.143 Sum_probs=40.8
Q ss_pred CEEEEEcCccch---HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCC--------CCCCCccEEE
Q 019479 115 MRVVDVGGGTGF---TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLP--------FPTDYADRYV 183 (340)
Q Consensus 115 ~~vLDiGcG~G~---~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~--------~~~~~fD~v~ 183 (340)
++||-.|+..|. .+..+++. +.+|++++.++...+.+++. .++.+...|+.+.. +..+.+|+|+
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi 76 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLER--GWQVTATVRGPQQDTALQAL---PGVHIEKLDMNDPASLDQLLQRLQGQRFDLLF 76 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhC--CCEEEEEeCCCcchHHHHhc---cccceEEcCCCCHHHHHHHHHHhhcCCCCEEE
Confidence 357766664332 34444443 67999999887655444321 35667777875521 2234689988
Q ss_pred ecCcc
Q 019479 184 SAGSI 188 (340)
Q Consensus 184 ~~~~l 188 (340)
.+...
T Consensus 77 ~~ag~ 81 (225)
T PRK08177 77 VNAGI 81 (225)
T ss_pred EcCcc
Confidence 76543
No 491
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=70.08 E-value=57 Score=29.27 Aligned_cols=136 Identities=16% Similarity=0.028 Sum_probs=73.1
Q ss_pred CEEEEEcCcc-c-hHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCC-----------------------CCcEEEEcCC
Q 019479 115 MRVVDVGGGT-G-FTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----------------------KECTIIEGDA 169 (340)
Q Consensus 115 ~~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-----------------------~~i~~~~~d~ 169 (340)
.+|.-||+|. | ..+..++.. +.+|+.+|.+++.++.++++... .++.+ ..|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART--GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCH
Confidence 4688899984 2 344445544 77999999999998866542110 01111 1122
Q ss_pred CCCCCCCCCccEEEecCcccccCCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhh------------Hhh-c---
Q 019479 170 EDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFAD------------VWM-L--- 233 (340)
Q Consensus 170 ~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~------------~~~-~--- 233 (340)
. .-...|+|+..- .........+++++.+.++|+..++-................ .+. .
T Consensus 81 ~----~~~~aDlVieav-~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vE 155 (291)
T PRK06035 81 E----SLSDADFIVEAV-PEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIE 155 (291)
T ss_pred H----HhCCCCEEEEcC-cCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEE
Confidence 1 113468888642 222222357788888888887655432222111111111100 000 0
Q ss_pred -----CC---CHHHHHHHHHHCCCcEEEEEEeC
Q 019479 234 -----FP---KEEEYIEWFQKAGFKDVKLKRIG 258 (340)
Q Consensus 234 -----~~---~~~~~~~~l~~aGF~~v~~~~~~ 258 (340)
.. +.+...++++..|...+.+.+..
T Consensus 156 v~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~p 188 (291)
T PRK06035 156 VVRAALTSEETFNTTVELSKKIGKIPIEVADVP 188 (291)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCC
Confidence 11 24566778899999999886553
No 492
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=69.85 E-value=34 Score=31.26 Aligned_cols=94 Identities=22% Similarity=0.277 Sum_probs=57.3
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCC-CCCCCCccEEEecCccc
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDL-PFPTDYADRYVSAGSIE 189 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~-~~~~~~fD~v~~~~~l~ 189 (340)
.++.+||-.||| .|..+..+++.. +.++++++.+++..+.+++. .... ++...-... ....+.+|+|+....-
T Consensus 168 ~~g~~vlV~g~g~vG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~-g~~~--vi~~~~~~~~~~~~~~~d~v~~~~g~- 242 (337)
T cd05283 168 GPGKRVGVVGIGGLGHLAVKFAKAL-GAEVTAFSRSPSKKEDALKL-GADE--FIATKDPEAMKKAAGSLDLIIDTVSA- 242 (337)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHc-CCcE--EecCcchhhhhhccCCceEEEECCCC-
Confidence 467777778774 455666667765 67899999998888888643 2111 111100000 0113558988853221
Q ss_pred ccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 190 YWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 190 ~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
...+..+.+.|+++|+++...
T Consensus 243 -----~~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 243 -----SHDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred -----cchHHHHHHHhcCCCEEEEEe
Confidence 124677889999999998764
No 493
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=69.72 E-value=11 Score=31.28 Aligned_cols=109 Identities=17% Similarity=0.071 Sum_probs=61.4
Q ss_pred CCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCccccc
Q 019479 113 RNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
Q Consensus 113 ~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 191 (340)
.+++|.=+|+| .|.-....++.+ +.+|+++|.+......... .. +...+++++ -...|+|++..-+..-
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~f-G~~V~~~d~~~~~~~~~~~----~~--~~~~~l~el---l~~aDiv~~~~plt~~ 104 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAF-GMRVIGYDRSPKPEEGADE----FG--VEYVSLDEL---LAQADIVSLHLPLTPE 104 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHT-T-EEEEEESSCHHHHHHHH----TT--EEESSHHHH---HHH-SEEEE-SSSSTT
T ss_pred CCCEEEEEEEcCCcCeEeeeeecC-CceeEEecccCChhhhccc----cc--ceeeehhhh---cchhhhhhhhhccccc
Confidence 68999999998 465555556665 7899999998877663322 11 233344432 1336888875544210
Q ss_pred CCHHHHHHHHHHhcccCcEEEEEccCCCchhHhhHhhhHhhcCCCHHHHHHHHHHC
Q 019479 192 PDPQRGIKEAYRVLKIGGKACVIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFQKA 247 (340)
Q Consensus 192 ~d~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 247 (340)
...-+=++....||+|..++=+. ... ..+.+.+.+.|++-
T Consensus 105 -T~~li~~~~l~~mk~ga~lvN~a--RG~-------------~vde~aL~~aL~~g 144 (178)
T PF02826_consen 105 -TRGLINAEFLAKMKPGAVLVNVA--RGE-------------LVDEDALLDALESG 144 (178)
T ss_dssp -TTTSBSHHHHHTSTTTEEEEESS--SGG-------------GB-HHHHHHHHHTT
T ss_pred -cceeeeeeeeeccccceEEEecc--chh-------------hhhhhHHHHHHhhc
Confidence 00112256678889877654322 111 23567777777763
No 494
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=69.71 E-value=56 Score=28.10 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=42.2
Q ss_pred CCCEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHH--HHHHHHhCCCCCcEEEEcCCCCCCC----------CCCC
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQ--LAKAKQKEPLKECTIIEGDAEDLPF----------PTDY 178 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~--~~~a~~~~~~~~i~~~~~d~~~~~~----------~~~~ 178 (340)
.+++||-.|++.| .+..+++.+ .+.+|++++.++.. .+..++ . ..++.++..|+.+... ..+.
T Consensus 4 ~~k~vlItGas~g-IG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~~-~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (248)
T TIGR01832 4 EGKVALVTGANTG-LGQGIAVGLAEAGADIVGAGRSEPSETQQQVEA-L-GRRFLSLTADLSDIEAIKALVDSAVEEFGH 80 (248)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHh-c-CCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 5688998888654 333333332 26799999876521 111111 1 2457788888865320 1145
Q ss_pred ccEEEecCcc
Q 019479 179 ADRYVSAGSI 188 (340)
Q Consensus 179 fD~v~~~~~l 188 (340)
.|+++.+...
T Consensus 81 ~d~li~~ag~ 90 (248)
T TIGR01832 81 IDILVNNAGI 90 (248)
T ss_pred CCEEEECCCC
Confidence 8999876554
No 495
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=69.68 E-value=48 Score=29.55 Aligned_cols=96 Identities=22% Similarity=0.188 Sum_probs=53.7
Q ss_pred CCCCEEEEEcC--ccchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCC-cEEEEcCCCCCCCCCCCccEEEecCcc
Q 019479 112 DRNMRVVDVGG--GTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE-CTIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
Q Consensus 112 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-i~~~~~d~~~~~~~~~~fD~v~~~~~l 188 (340)
.++.+|+-.|+ +.|..+..+++.. +.++++++.+ ...+.+++. .... +.....+........+.+|+|+....-
T Consensus 142 ~~g~~vli~g~~g~~g~~~~~la~~~-g~~v~~~~~~-~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~ 218 (319)
T cd08267 142 KPGQRVLINGASGGVGTFAVQIAKAL-GAHVTGVCST-RNAELVRSL-GADEVIDYTTEDFVALTAGGEKYDVIFDAVGN 218 (319)
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEeCH-HHHHHHHHc-CCCEeecCCCCCcchhccCCCCCcEEEECCCc
Confidence 47889999997 4677777788775 6789988854 666666432 2111 000111110001233458999864321
Q ss_pred cccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 189 EYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 189 ~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
....... ....++++|+++...
T Consensus 219 ----~~~~~~~-~~~~l~~~g~~i~~g 240 (319)
T cd08267 219 ----SPFSLYR-ASLALKPGGRYVSVG 240 (319)
T ss_pred ----hHHHHHH-hhhccCCCCEEEEec
Confidence 1112222 233499999998764
No 496
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=69.67 E-value=23 Score=32.29 Aligned_cols=95 Identities=23% Similarity=0.274 Sum_probs=58.6
Q ss_pred CCCCEEEEEcCc-cchHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCC-CC----CCCCCCCccEEEec
Q 019479 112 DRNMRVVDVGGG-TGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDA-ED----LPFPTDYADRYVSA 185 (340)
Q Consensus 112 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~-~~----~~~~~~~fD~v~~~ 185 (340)
.++.+||-.|+| .|..+..+++...+.++++++.+++..+.+++. .... ++.... .+ +.-..+.+|.++..
T Consensus 161 ~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~-g~~~--v~~~~~~~~~~~~v~~~~~~~d~vi~~ 237 (338)
T PRK09422 161 KPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEV-GADL--TINSKRVEDVAKIIQEKTGGAHAAVVT 237 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHc-CCcE--EecccccccHHHHHHHhcCCCcEEEEe
Confidence 478899988864 456666677753377999999999999998653 2111 111110 11 00011247754432
Q ss_pred CcccccCCHHHHHHHHHHhcccCcEEEEEc
Q 019479 186 GSIEYWPDPQRGIKEAYRVLKIGGKACVIG 215 (340)
Q Consensus 186 ~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~ 215 (340)
.. . ...+..+.+.|+++|+++...
T Consensus 238 ~~-----~-~~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 238 AV-----A-KAAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred CC-----C-HHHHHHHHHhccCCCEEEEEe
Confidence 21 1 346888999999999998764
No 497
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=69.65 E-value=8.9 Score=33.96 Aligned_cols=78 Identities=23% Similarity=0.166 Sum_probs=45.9
Q ss_pred HHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcCCCCCCCCCCCccEEEecCcccccCCHHHHHHHHHHhccc
Q 019479 128 TLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKI 207 (340)
Q Consensus 128 ~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkp 207 (340)
+..+.+..+..+|+|+|.++..++.|.+... +.-...+.+. -..+|+|+..--+. ....+++++...+++
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~---~~~~~~~~~~----~~~~DlvvlavP~~---~~~~~l~~~~~~~~~ 71 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALELGI---IDEASTDIEA----VEDADLVVLAVPVS---AIEDVLEEIAPYLKP 71 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHTTS---SSEEESHHHH----GGCCSEEEE-S-HH---HHHHHHHHHHCGS-T
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHCCC---eeeccCCHhH----hcCCCEEEEcCCHH---HHHHHHHHhhhhcCC
Confidence 5566777556899999999999999975421 1111121111 13369999865443 234678888888888
Q ss_pred CcEEEEEc
Q 019479 208 GGKACVIG 215 (340)
Q Consensus 208 gG~l~i~~ 215 (340)
|+.+.=+.
T Consensus 72 ~~iv~Dv~ 79 (258)
T PF02153_consen 72 GAIVTDVG 79 (258)
T ss_dssp TSEEEE--
T ss_pred CcEEEEeC
Confidence 77765443
No 498
>PRK06125 short chain dehydrogenase; Provisional
Probab=69.56 E-value=50 Score=28.72 Aligned_cols=75 Identities=11% Similarity=0.093 Sum_probs=45.6
Q ss_pred CCCEEEEEcCccchHHHHHHHhC--CCceEEEEeCCHHHHHHHHHhCC---CCCcEEEEcCCCCCC------CCCCCccE
Q 019479 113 RNMRVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLAKAKQKEP---LKECTIIEGDAEDLP------FPTDYADR 181 (340)
Q Consensus 113 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~---~~~i~~~~~d~~~~~------~~~~~fD~ 181 (340)
.++++|-.|++.| .+..+++.+ .+.+|++++.+++..+.+.+... ..++.++..|+.+.. -..+..|+
T Consensus 6 ~~k~vlItG~~~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 6 AGKRVLITGASKG-IGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 4678888887544 333333222 26799999998876665443321 235677888886521 01256899
Q ss_pred EEecCcc
Q 019479 182 YVSAGSI 188 (340)
Q Consensus 182 v~~~~~l 188 (340)
++.+...
T Consensus 85 lv~~ag~ 91 (259)
T PRK06125 85 LVNNAGA 91 (259)
T ss_pred EEECCCC
Confidence 8876544
No 499
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=69.10 E-value=48 Score=31.35 Aligned_cols=102 Identities=18% Similarity=0.229 Sum_probs=58.0
Q ss_pred CCCEEEEEcCcc-ch-HHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC---CCCcE-----------E-EEcCCCCCCCC
Q 019479 113 RNMRVVDVGGGT-GF-TTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECT-----------I-IEGDAEDLPFP 175 (340)
Q Consensus 113 ~~~~vLDiGcG~-G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~i~-----------~-~~~d~~~~~~~ 175 (340)
...+|--+|-|- |. .+..++++ +.+|+|+|+++..++...+-.. .+... + ...|.+.+
T Consensus 8 ~~~~I~ViGLGYVGLPlA~~fA~~--G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l--- 82 (436)
T COG0677 8 MSATIGVIGLGYVGLPLAAAFASA--GFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL--- 82 (436)
T ss_pred CceEEEEEccccccHHHHHHHHHc--CCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc---
Confidence 346777888774 33 23444444 8999999999999888764311 11000 0 11122211
Q ss_pred CCCccEEEec--Cccc--ccCCH---HHHHHHHHHhcccCcEEEEEccCCCc
Q 019479 176 TDYADRYVSA--GSIE--YWPDP---QRGIKEAYRVLKIGGKACVIGPVYPT 220 (340)
Q Consensus 176 ~~~fD~v~~~--~~l~--~~~d~---~~~l~~~~~~LkpgG~l~i~~~~~~~ 220 (340)
...|+++.. .-+. +-+|. ..+.+.+.+.||+|-.+++.....+.
T Consensus 83 -~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PG 133 (436)
T COG0677 83 -KECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPG 133 (436)
T ss_pred -ccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCC
Confidence 135655542 1111 22333 37788899999998877777665553
No 500
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=68.82 E-value=16 Score=29.03 Aligned_cols=91 Identities=16% Similarity=0.196 Sum_probs=53.6
Q ss_pred EEEEcCcc-chH-HHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCCcEEEEcC----------CCCCCCCCCCccEEEe
Q 019479 117 VVDVGGGT-GFT-TLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECTIIEGD----------AEDLPFPTDYADRYVS 184 (340)
Q Consensus 117 vLDiGcG~-G~~-~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~i~~~~~d----------~~~~~~~~~~fD~v~~ 184 (340)
|+-+|+|. |.+ +..|.+ .+.+|+.++-++ ..+..++. .+++...+ ..........+|+|+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~--~g~~V~l~~r~~-~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv 73 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ--AGHDVTLVSRSP-RLEAIKEQ----GLTITGPDGDETVQPPIVISAPSADAGPYDLVIV 73 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH--TTCEEEEEESHH-HHHHHHHH----CEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE
T ss_pred CEEECcCHHHHHHHHHHHH--CCCceEEEEccc-cHHhhhhe----eEEEEecccceecccccccCcchhccCCCcEEEE
Confidence 45577773 433 333334 488999999977 55555443 11211111 0000123567999998
Q ss_pred cCcccccCCHHHHHHHHHHhcccCcEEEEEccC
Q 019479 185 AGSIEYWPDPQRGIKEAYRVLKIGGKACVIGPV 217 (340)
Q Consensus 185 ~~~l~~~~d~~~~l~~~~~~LkpgG~l~i~~~~ 217 (340)
.-=-. +...+++.+.+.+.++..+++....
T Consensus 74 ~vKa~---~~~~~l~~l~~~~~~~t~iv~~qNG 103 (151)
T PF02558_consen 74 AVKAY---QLEQALQSLKPYLDPNTTIVSLQNG 103 (151)
T ss_dssp -SSGG---GHHHHHHHHCTGEETTEEEEEESSS
T ss_pred Eeccc---chHHHHHHHhhccCCCcEEEEEeCC
Confidence 53222 4467899999999999888777544
Done!