BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019482
(340 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 232
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 233 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 288
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 289 ISTACHPTENIIASAALE 306
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 232
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 233 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 288
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 289 ISTACHPTENIIASAALE 306
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 111 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 170
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 171 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 225
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 226 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 281
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 282 ISTACHPTENIIASAALE 299
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 117 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 176
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 177 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 231
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 232 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 287
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 288 ISTACHPTENIIASAALE 305
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 232
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 233 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 288
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 289 ISTACHPTENIIASAALE 306
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 134 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 194 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 248
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 249 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 304
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 305 ISTACHPTENIIASAALE 322
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 226
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 227 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 282
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 283 ISTACHPTENIIASAALE 300
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 136 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 195
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 196 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 250
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 251 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 306
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 307 ISTACHPTENIIASAALE 324
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 113 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 172
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 173 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 227
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 228 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 283
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 284 ISTACHPTENIIASAALE 301
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 108 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 167
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 168 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 222
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 223 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 278
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 279 ISTACHPTENIIASAALE 296
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 226
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 227 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 282
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 283 ISTACHPTENIIASAALE 300
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 129 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 188
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 189 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 243
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 244 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 299
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 300 ISTACHPTENIIASAALE 317
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 229
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 285
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 286 ISTACHPTENIIASAALE 303
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 229
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 285
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 286 ISTACHPTENIIASAALE 303
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + + P V + F+ D + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 229
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 285
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 286 ISTACHPTENIIASAALE 303
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + P V + F+ D + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 229
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNMVYIWNLQTKEI---VQKLQGHTDVV 285
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 286 ISTACHPTENIIASAALE 303
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 10/127 (7%)
Query: 62 SEGDPMT-IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF 120
+ DP++ + N G V S+ +G C++++ G L+ PP+ + F
Sbjct: 150 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS------FVKF 203
Query: 121 SVDGSRFAAGGVDGHLRIMHWPSLRII--LDEPKAHKSVLDMDFSLD-SEFLATTSTDGS 177
S +G A +D L++ + + + K K + +FS+ +++ + S D
Sbjct: 204 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNM 263
Query: 178 ARIWKTE 184
IW +
Sbjct: 264 VYIWNLQ 270
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C +F+ + +G D +RI + + P V + F+ D + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
RIW T G L + + + +FS +G K L T+ L ++D S
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDND----LKLWDYSKGKC 229
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
+ GHK + S++ GK++ GS+D + + +++ EI ++L T +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNMVYIWNLQTKEI---VQKLQGHTDVV 285
Query: 293 LVEFC-PTQRVVLTASKE 309
+ C PT+ ++ +A+ E
Sbjct: 286 ISTACHPTENIIASAALE 303
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 10/127 (7%)
Query: 62 SEGDPMT-IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF 120
+ DP++ + N G V S+ +G C++++ G L+ PP+ + F
Sbjct: 150 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS------FVKF 203
Query: 121 SVDGSRFAAGGVDGHLRIMHWPSLRII--LDEPKAHKSVLDMDFSLD-SEFLATTSTDGS 177
S +G A +D L++ + + + K K + +FS+ +++ + S D
Sbjct: 204 SPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNM 263
Query: 178 ARIWKTE 184
IW +
Sbjct: 264 VYIWNLQ 270
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 11/160 (6%)
Query: 120 FSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSAR 179
S DG +G DG LR+ + K VL + FS D+ + + S D + +
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW----N 235
+W T +T + E + RFS + + P + V G L+ V++++ N
Sbjct: 131 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII---VSCGWDKLVKVWNLANCKLKTN 187
Query: 236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275
IGH L + +++S DG A G KDG + D+ +
Sbjct: 188 HIGHTGYL----NTVTVSPDGSLCASGGKDGQAMLWDLNE 223
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 11/160 (6%)
Query: 120 FSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSAR 179
S DG +G DG LR+ + K VL + FS D+ + + S D + +
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW----N 235
+W T +T + E + RFS + + P + V G L+ V++++ N
Sbjct: 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII---VSCGWDKLVKVWNLANCKLKTN 210
Query: 236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275
IGH L + +++S DG A G KDG + D+ +
Sbjct: 211 HIGHTGYL----NTVTVSPDGSLCASGGKDGQAMLWDLNE 246
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 74/299 (24%), Positives = 112/299 (37%), Gaps = 43/299 (14%)
Query: 34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVY 93
P+++++ +P+T+ VY + + EGD G E
Sbjct: 561 PNIVQLGLCEPETSEVYRQAKLQA---KQEGDT-------------------GRLYLEWI 598
Query: 94 GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153
T NL + P DA C FS DG R A+ G D L++ + +LD
Sbjct: 599 NKKTIKNLSRLVVRPHTDAVYHAC--FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAH 656
Query: 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213
VL FS D ++AT S D +IW + G +S E++ C F+
Sbjct: 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS-EQVNCCHFTNKSNHLL 715
Query: 214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASV--LSISLDGKYLAMGSKDGDICVV 271
L + L ++D++ K + SV S D + LA S DG + +
Sbjct: 716 L---ATGSNDFFLKLWDLN--QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Query: 272 DVK----KMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGL 326
DV+ + IN KR L + E P V+ W A K+ V A K L
Sbjct: 771 DVRSANERKSIN--VKRFFLSS-----EDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL 822
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 14/166 (8%)
Query: 118 LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTDG 176
+ F+ DG + D +++ +W + + +AH+ +V D DS L + S DG
Sbjct: 1009 IQFTADGKTLISSSEDSVIQVWNWQTGDYVF--LQAHQETVKDFRLLQDSRLL-SWSFDG 1065
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI-STWN 235
+ ++W G T + + C S D TK F + A + +D+ S +
Sbjct: 1066 TVKVWNVITGRIERDFTCHQGTVLS-CAISSDATK---FSSTSADKTAKIWSFDLLSPLH 1121
Query: 236 KI-GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH 280
++ GH +R A SLDG LA G +G+I + +V ++ H
Sbjct: 1122 ELKGHNGCVRCSA----FSLDGILLATGDDNGEIRIWNVSDGQLLH 1163
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 74/299 (24%), Positives = 112/299 (37%), Gaps = 43/299 (14%)
Query: 34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVY 93
P+++++ +P+T+ VY + + EGD G E
Sbjct: 568 PNIVQLGLCEPETSEVYRQAKLQA---KQEGDT-------------------GRLYLEWI 605
Query: 94 GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153
T NL + P DA C FS DG R A+ G D L++ + +LD
Sbjct: 606 NKKTIKNLSRLVVRPHTDAVYHAC--FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAH 663
Query: 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213
VL FS D ++AT S D +IW + G +S E++ C F+
Sbjct: 664 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS-EQVNCCHFTNKSNHLL 722
Query: 214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASV--LSISLDGKYLAMGSKDGDICVV 271
L + L ++D++ K + SV S D + LA S DG + +
Sbjct: 723 L---ATGSNDFFLKLWDLN--QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Query: 272 DVK----KMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGL 326
DV+ + IN KR L + E P V+ W A K+ V A K L
Sbjct: 778 DVRSANERKSIN--VKRFFLSS-----EDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL 829
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 14/166 (8%)
Query: 118 LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTDG 176
+ F+ DG + D +++ +W + + +AH+ +V D DS L + S DG
Sbjct: 1016 IQFTADGKTLISSSEDSVIQVWNWQTGDYVF--LQAHQETVKDFRLLQDSRLL-SWSFDG 1072
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI-STWN 235
+ ++W G T + + C S D TK F + A + +D+ S +
Sbjct: 1073 TVKVWNVITGRIERDFTCHQGTVLS-CAISSDATK---FSSTSADKTAKIWSFDLLSPLH 1128
Query: 236 KI-GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH 280
++ GH +R A SLDG LA G +G+I + +V ++ H
Sbjct: 1129 ELKGHNGCVRCSA----FSLDGILLATGDDNGEIRIWNVSDGQLLH 1170
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 100 NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVL 158
NL + P DA C FS DG R A+ G D L++ + +L E KAH+ VL
Sbjct: 611 NLSRLVVRPHTDAVYHAC--FSEDGQRIASCGADKTLQVFKAETGEKLL-EIKAHEDEVL 667
Query: 159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS 206
FS D F+AT S D +IW + G +S E++ C F+
Sbjct: 668 CCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHS-EQVNCCHFT 714
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 120 FSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD-FSLDSEFLATTSTDGSA 178
S D ++F++ D +I + L + L E + H + FS+DS LAT +G
Sbjct: 1099 ISHDATKFSSTSADKTAKIWSF-DLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEI 1157
Query: 179 RIWKTEDG 186
RIW +G
Sbjct: 1158 RIWNVSNG 1165
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 72/205 (35%), Gaps = 48/205 (23%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
C S A G +G + I+ + RI + K+V + F+ D + L ++S D
Sbjct: 972 CCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDA 1031
Query: 177 SARIWKTE------------------------------DGVA--WTFLTRNSDEK----- 199
++W + DG W +T N ++
Sbjct: 1032 EIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQ 1091
Query: 200 --IELCRFSKDGTKPFLFCTVQRGDKALLAVYDI--STWNKIGHKRLLRKPASVLSISLD 255
+ C S D TK F + A + +D+ GH +R A S+D
Sbjct: 1092 GTVLSCDISHDATK---FSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSA----FSVD 1144
Query: 256 GKYLAMGSKDGDICVVDVKKMEINH 280
LA G +G+I + +V E+ H
Sbjct: 1145 STLLATGDDNGEIRIWNVSNGELLH 1169
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG 124
D T+A +P T G +F V G + +L + L +++S DG
Sbjct: 124 DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL-------SIAYSPDG 176
Query: 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184
A+G +DG + I + +++ + + FS DS+ L T S DG +I+ +
Sbjct: 177 KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ 236
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 18/186 (9%)
Query: 130 GGVDGHLRIMHWPSLRIILD-EPKAHK-SVLDMDFSLDSEFLATTSTDGSARIWKTEDGV 187
G +D +++ W R+ L + H+ V+ +D S A++S D R+W E+G
Sbjct: 54 GSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK 113
Query: 188 AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR--LLRK 245
+ + L FS D +L G + V + G K L +
Sbjct: 114 QIKSIDAGPVDAWTLA-FSPD--SQYLATGTHVGKVNIFGV-------ESGKKEYSLDTR 163
Query: 246 PASVLSISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVV 303
+LSI+ DGKYLA G+ DG I + D+ ++ H + H I + F P +++
Sbjct: 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLH-TLEGH-AMPIRSLTFSPDSQLL 221
Query: 304 LTASKE 309
+TAS +
Sbjct: 222 VTASDD 227
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 12/173 (6%)
Query: 128 AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG- 186
A+ +D H+R+ + + I + FS DS++LAT + G I+ E G
Sbjct: 96 ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK 155
Query: 187 VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKP 246
++ TR + I +S DG +L G ++ ++DI+T + P
Sbjct: 156 KEYSLDTRG--KFILSIAYSPDG--KYLASGAIDG---IINIFDIATGKLLHTLEGHAMP 208
Query: 247 ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL-VEFCP 298
L+ S D + L S DG I + DV+ + + L S L V FCP
Sbjct: 209 IRSLTFSPDSQLLVTASDDGYIKIYDVQHANL---AGTLSGHASWVLNVAFCP 258
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 7/163 (4%)
Query: 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214
K VL + FS D+ + + D + R+W + T + + RFS P +
Sbjct: 110 KDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVI 169
Query: 215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK 274
V G L+ V+D++T + + + +++S DG A KDG + D+
Sbjct: 170 ---VSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLT 226
Query: 275 KMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL 317
K E + G I + F P R + A+ E G I L
Sbjct: 227 KGEA---LSEMAAGAPINQICFSP-NRYWMCAATEKGIRIFDL 265
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 54/134 (40%), Gaps = 8/134 (5%)
Query: 57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK 116
Y F D +++A +P V + +++ V G ++ L++
Sbjct: 103 YKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGEC--MHTLSRGA----HTDWVS 156
Query: 117 CLSFS--VDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST 174
C+ FS +D +GG D +++ + R++ D V + S D A++
Sbjct: 157 CVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDK 216
Query: 175 DGSARIWKTEDGVA 188
DG AR+W G A
Sbjct: 217 DGVARLWDLTKGEA 230
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 84/204 (41%), Gaps = 17/204 (8%)
Query: 120 FSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSAR 179
S DG +G DG LR+ + K VL + FSLD+ + + S D + +
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK 497
Query: 180 IWKTEDGVAWTFLTRNSDEK--IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-- 235
+W T +T + + RFS + +P + DK + V+++S
Sbjct: 498 LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA--SWDKT-VKVWNLSNCKLR 554
Query: 236 --KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL 293
GH + S +++S DG A G KDG + + D+ + + + L + I
Sbjct: 555 STLAGHTGYV----STVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY---SLEANSVIHA 607
Query: 294 VEFCPTQRVVLTASKEWGAMITKL 317
+ F P R L A+ E G I L
Sbjct: 608 LCFSP-NRYWLCAATEHGIKIWDL 630
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 250 LSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE 309
LSIS +GKY+A G KD + + D+ + + + + G++I + F P + V + +
Sbjct: 219 LSISPNGKYIATGGKDKKLLIWDI--LNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQ 276
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%)
Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD 175
+ + FS DG A G D +RI + +I++ + + +D+ + L + S D
Sbjct: 127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 186
Query: 176 GSARIWKTEDG 186
+ RIW G
Sbjct: 187 RTVRIWDLRTG 197
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 69/180 (38%), Gaps = 37/180 (20%)
Query: 117 CLSFSVDGSRFAAG--GVDGHLRIMHWPSLRIILDEPKAHKSVLDMD------------- 161
C+ FS DG A G R+ + + D+ A+K +++
Sbjct: 69 CVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRS 128
Query: 162 --FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219
FS D +FLAT + D RIW E+ L + + L F
Sbjct: 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS------------ 176
Query: 220 RGDKALLAVYD--ISTWN-KIGHKRL-LRKPASVLSISL---DGKYLAMGSKDGDICVVD 272
GDK + D + W+ + G L L V ++++ DGKY+A GS D + V D
Sbjct: 177 -GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 235
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 13/162 (8%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
CL + D + +G D ++I +L SVL + + D + T S+D
Sbjct: 138 CLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDS 193
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
+ R+W G L + + + L RF+ + C+ R +AV+D+++
Sbjct: 194 TVRVWDVNTGEMLNTLIHHCEAVLHL-RFN---NGMMVTCSKDRS----IAVWDMASPTD 245
Query: 237 IGHKRLLR-KPASVLSISLDGKYLAMGSKDGDICVVDVKKME 277
I +R+L A+V + D KY+ S D I V + E
Sbjct: 246 ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE 287
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 247 ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA 306
A+V S GKY+ G KDG I DV S LH SI+ ++F P +T+
Sbjct: 178 ATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH-EKSISDMQFSPDLTYFITS 236
Query: 307 SKEWGAMITKLT 318
S++ + + ++
Sbjct: 237 SRDTNSFLVDVS 248
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141
GP ++ S G+ +A+GG DG +R+ H+
Sbjct: 316 GPLNTVAISPQGTSYASGGEDGFIRLHHF 344
>pdb|1T9O|A Chain A, Crystal Structure Of V44g Cp Rubredoxin
pdb|1T9O|B Chain B, Crystal Structure Of V44g Cp Rubredoxin
pdb|1T9O|C Chain C, Crystal Structure Of V44g Cp Rubredoxin
Length = 54
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 50 YTSPLVTYVFDESEGDPMTIAVNPSG------DDFVCSTTNGGCKLFE 91
YT + Y+++ +GDP VNP DD+VC GG FE
Sbjct: 4 YTCTVCGYIYNPEDGDPDN-GVNPGTDFKDIPDDWVCPLCGGGKDQFE 50
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 118 LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGS 177
L F+ G F + G D L P I + K SVL D S+D +++ T S D
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIF-QSKESSSVLSCDISVDDKYIVTGSGDKK 329
Query: 178 ARIWK 182
A +++
Sbjct: 330 ATVYE 334
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 24/137 (17%)
Query: 59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLF--------EVYGGATDINLLAKKMPPLQ 110
+ EGD ++ P G F + +G C+LF +VY D N ++P +
Sbjct: 245 YHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN--DNELPIVT 302
Query: 111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL--RIILD---EPKAHKSVLD-MDFSL 164
++FS+ G AG +G + W +L ++L+ +H+ + + S
Sbjct: 303 S------VAFSISGRLLFAGYSNGDCYV--WDTLLAEMVLNLGTLQNSHEGRISCLGLSS 354
Query: 165 DSEFLATTSTDGSARIW 181
D L T S D + +IW
Sbjct: 355 DGSALCTGSWDKNLKIW 371
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA--GPQKCLSFSVDGS 125
++A + SG +NG C +++ +NL LQ++ G CL S DGS
Sbjct: 303 SVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL-----GTLQNSHEGRISCLGLSSDGS 357
Query: 126 RFAAGGVDGHLRIMHWPSLRIIL 148
G D +L+I + R I+
Sbjct: 358 ALCTGSWDKNLKIWAFSGHRKIV 380
>pdb|3EK3|A Chain A, Crystal Structure Of Nitroreductase With Bound Fmn
(yp_211706.1) From Bacteroides Fragilis Nctc 9343 At
1.70 A Resolution
Length = 190
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 11/64 (17%)
Query: 133 DGHLR----------IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK 182
D HLR H P+L I+ +EPK + D ++++ FLA TS G A W
Sbjct: 76 DKHLRERGHSETYCCYYHAPTLVIVSNEPKQWWAGXDCACAIENXFLAATSL-GIASCWI 134
Query: 183 TEDG 186
+ G
Sbjct: 135 NQLG 138
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 63/167 (37%), Gaps = 19/167 (11%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS-VLDMDFSLDSEFLATTSTD 175
CL++S DG+ G +G LR+ W +L+ H++ ++ + ++ D + + +
Sbjct: 113 CLAWSHDGNSIVTGVENGELRL--WNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVE 170
Query: 176 GSARIWKTEDGVAWTF--LTRNSDEKIELCRFSKDGTKPFLFCTVQR------GDKALLA 227
+W G L I S DG+ V G K +
Sbjct: 171 NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIF 230
Query: 228 VYDIS----TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV 270
VY I+ T IGH P SVL + K L S DG + +
Sbjct: 231 VYQITEKTPTGKLIGH----HGPISVLEFNDTNKLLLSASDDGTLRI 273
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 27/134 (20%)
Query: 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS----------DEKIELC 203
H + ++F+ ++ L + S DG+ RIW +G + +S D+K+ C
Sbjct: 247 HGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISC 306
Query: 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS 263
S DG+ ++++ L++ D P IS DG+ A+
Sbjct: 307 --SMDGS--VRLWSLKQNTLLALSIVD-------------GVPIFAGRISQDGQKYAVAF 349
Query: 264 KDGDICVVDVKKME 277
DG + V D+KK+
Sbjct: 350 MDGQVNVYDLKKLN 363
>pdb|3R9C|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Cyp164a2 With
Econazole Bound
pdb|3R9B|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Cyp164a2 In
Ligand Free State
pdb|3R9B|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Cyp164a2 In
Ligand Free State
pdb|3R9B|C Chain C, Crystal Structure Of Mycobacterium Smegmatis Cyp164a2 In
Ligand Free State
Length = 418
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 69 IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA 128
+AV SGD C L + G T +NL+A + P + + + DGSR +
Sbjct: 232 VAVEESGDQLTEDEIIATCNLLLIAGHETTVNLIANAALAMLRT-PGQWAALAADGSRAS 290
Query: 129 A 129
A
Sbjct: 291 A 291
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 168 FLATTSTDGSARIW--KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225
FLAT S D + +IW + G A + + FS DG + L T Q+ +
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR--LLTTDQKSE--- 319
Query: 226 LAVYDISTWN 235
+ VY S W+
Sbjct: 320 IRVYSASQWD 329
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 168 FLATTSTDGSARIW--KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225
FLAT S D + +IW + G A + + FS DG + L T Q+ +
Sbjct: 266 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR--LLTTDQKSE--- 320
Query: 226 LAVYDISTWN 235
+ VY S W+
Sbjct: 321 IRVYSASQWD 330
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 168 FLATTSTDGSARIW--KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225
FLAT S D + +IW + G A + + FS DG + L T Q+ +
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR--LLTTDQKSE--- 319
Query: 226 LAVYDISTWN 235
+ VY S W+
Sbjct: 320 IRVYSASQWD 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,978,006
Number of Sequences: 62578
Number of extensions: 457582
Number of successful extensions: 1273
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1096
Number of HSP's gapped (non-prelim): 132
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)