Query 019482
Match_columns 340
No_of_seqs 674 out of 1946
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 09:49:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 3.8E-51 8.3E-56 316.9 25.5 306 4-339 115-457 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.4E-50 3.1E-55 317.2 23.7 282 3-316 174-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 1.4E-46 3E-51 291.6 24.3 281 4-316 157-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 3.4E-46 7.5E-51 292.7 20.3 261 61-339 173-436 (459)
5 KOG0279 G protein beta subunit 100.0 1.1E-43 2.3E-48 264.7 31.7 290 3-318 14-313 (315)
6 KOG0286 G-protein beta subunit 100.0 3E-43 6.4E-48 264.0 31.1 287 3-316 54-343 (343)
7 KOG0315 G-protein beta subunit 100.0 1.2E-43 2.7E-48 260.3 28.2 285 20-334 11-301 (311)
8 KOG0318 WD40 repeat stress pro 100.0 9.6E-43 2.1E-47 280.5 32.0 274 54-339 181-579 (603)
9 KOG0284 Polyadenylation factor 100.0 4.4E-45 9.5E-50 285.3 16.7 287 5-322 97-384 (464)
10 KOG0286 G-protein beta subunit 100.0 1.7E-42 3.8E-47 259.9 28.8 268 55-339 47-321 (343)
11 KOG0279 G protein beta subunit 100.0 2E-41 4.4E-46 252.6 26.8 259 53-321 5-265 (315)
12 KOG0273 Beta-transducin family 100.0 1E-41 2.2E-46 271.1 25.5 296 3-323 177-487 (524)
13 KOG0263 Transcription initiati 100.0 4.9E-42 1.1E-46 289.0 24.6 260 55-322 370-653 (707)
14 KOG0273 Beta-transducin family 100.0 5.4E-41 1.2E-45 267.0 28.8 285 4-318 235-523 (524)
15 KOG0263 Transcription initiati 100.0 1.2E-41 2.5E-46 286.7 26.2 250 5-276 379-651 (707)
16 KOG0295 WD40 repeat-containing 100.0 1.6E-40 3.4E-45 256.3 24.3 286 5-317 109-405 (406)
17 KOG0291 WD40-repeat-containing 100.0 4.5E-39 9.7E-44 269.7 32.4 295 4-327 307-621 (893)
18 KOG0291 WD40-repeat-containing 100.0 4.9E-39 1.1E-43 269.5 31.7 286 4-321 265-553 (893)
19 KOG0284 Polyadenylation factor 100.0 4.9E-41 1.1E-45 262.8 18.2 261 62-340 95-357 (464)
20 cd00200 WD40 WD40 domain, foun 100.0 3.9E-38 8.5E-43 258.2 35.0 283 2-316 7-289 (289)
21 KOG0266 WD40 repeat-containing 100.0 4.5E-39 9.7E-44 276.7 30.5 287 4-318 159-454 (456)
22 KOG0296 Angio-associated migra 100.0 1.4E-38 3E-43 245.7 29.8 286 3-318 63-398 (399)
23 KOG0265 U5 snRNP-specific prot 100.0 1.2E-39 2.7E-44 245.5 21.9 268 55-339 39-314 (338)
24 KOG0645 WD40 repeat protein [G 100.0 7.2E-38 1.6E-42 232.8 29.9 284 4-318 14-311 (312)
25 KOG0265 U5 snRNP-specific prot 100.0 6.3E-38 1.4E-42 236.3 28.0 282 4-317 47-337 (338)
26 KOG0295 WD40 repeat-containing 100.0 2.7E-39 5.8E-44 249.6 20.8 270 52-339 97-382 (406)
27 KOG0282 mRNA splicing factor [ 100.0 1.7E-39 3.6E-44 259.4 18.9 282 5-316 215-503 (503)
28 KOG0285 Pleiotropic regulator 100.0 1E-37 2.2E-42 240.6 27.3 286 4-321 151-442 (460)
29 KOG0315 G-protein beta subunit 100.0 2.3E-37 5.1E-42 227.4 27.5 261 4-296 40-308 (311)
30 KOG0318 WD40 repeat stress pro 100.0 6.6E-37 1.4E-41 247.0 32.2 316 2-340 57-537 (603)
31 KOG0285 Pleiotropic regulator 100.0 6.7E-38 1.5E-42 241.6 23.7 257 53-326 141-397 (460)
32 PLN00181 protein SPA1-RELATED; 100.0 1.5E-36 3.2E-41 279.6 37.0 290 3-317 482-792 (793)
33 KOG0278 Serine/threonine kinas 100.0 2.2E-38 4.8E-43 233.1 18.8 287 4-322 14-301 (334)
34 KOG0645 WD40 repeat protein [G 100.0 1.5E-36 3.4E-41 225.7 28.5 268 55-339 6-286 (312)
35 KOG0293 WD40 repeat-containing 100.0 1.4E-37 3.1E-42 243.9 23.3 289 2-320 222-515 (519)
36 KOG0276 Vesicle coat complex C 100.0 4.1E-37 8.8E-42 253.1 26.1 283 3-315 12-296 (794)
37 KOG0266 WD40 repeat-containing 100.0 1.6E-36 3.4E-41 261.0 30.6 260 56-332 151-420 (456)
38 KOG0319 WD40-repeat-containing 100.0 1.2E-36 2.6E-41 254.6 26.8 285 5-317 324-618 (775)
39 KOG0316 Conserved WD40 repeat- 100.0 1.1E-36 2.3E-41 222.3 21.8 248 56-321 10-260 (307)
40 KOG0319 WD40-repeat-containing 100.0 3.1E-36 6.8E-41 252.1 26.6 304 3-340 104-596 (775)
41 KOG0292 Vesicle coat complex C 100.0 1.9E-36 4.1E-41 258.2 25.5 284 4-319 9-322 (1202)
42 cd00200 WD40 WD40 domain, foun 100.0 2.5E-35 5.5E-40 241.5 29.9 263 58-338 4-266 (289)
43 KOG0281 Beta-TrCP (transducin 100.0 5.2E-37 1.1E-41 236.1 16.6 271 4-319 197-478 (499)
44 KOG0306 WD40-repeat-containing 100.0 5.4E-35 1.2E-39 245.3 28.8 311 3-340 319-641 (888)
45 KOG0310 Conserved WD40 repeat- 100.0 2.6E-35 5.7E-40 235.7 25.2 284 2-320 24-311 (487)
46 KOG0277 Peroxisomal targeting 100.0 3E-35 6.6E-40 216.9 22.9 295 4-317 8-308 (311)
47 KOG0973 Histone transcription 100.0 3.6E-35 7.8E-40 255.8 26.4 308 4-320 13-357 (942)
48 KOG0276 Vesicle coat complex C 100.0 2.3E-35 4.9E-40 242.9 22.5 249 59-320 9-259 (794)
49 KOG0275 Conserved WD40 repeat- 100.0 7.4E-36 1.6E-40 228.0 17.7 291 4-316 213-507 (508)
50 KOG0283 WD40 repeat-containing 100.0 6.7E-35 1.4E-39 248.0 25.2 258 55-321 258-579 (712)
51 KOG0640 mRNA cleavage stimulat 100.0 4.8E-35 1E-39 222.0 21.6 297 2-318 110-426 (430)
52 KOG0281 Beta-TrCP (transducin 100.0 1.4E-36 3.1E-41 233.7 13.3 250 63-338 197-454 (499)
53 KOG0282 mRNA splicing factor [ 100.0 1.7E-36 3.7E-41 242.2 13.9 267 53-336 204-477 (503)
54 KOG0316 Conserved WD40 repeat- 100.0 2.9E-34 6.2E-39 209.6 24.0 277 3-316 16-297 (307)
55 PLN00181 protein SPA1-RELATED; 100.0 6.1E-34 1.3E-38 262.3 31.3 252 59-320 479-740 (793)
56 KOG0293 WD40 repeat-containing 100.0 2E-34 4.3E-39 226.3 19.9 271 55-340 216-489 (519)
57 KOG0305 Anaphase promoting com 100.0 5.3E-33 1.2E-37 230.3 28.7 264 36-321 198-464 (484)
58 KOG1407 WD40 repeat protein [F 100.0 6.8E-34 1.5E-38 210.6 20.7 250 57-321 14-264 (313)
59 KOG0641 WD40 repeat protein [G 100.0 4.4E-32 9.6E-37 197.4 29.7 299 2-318 30-349 (350)
60 KOG0313 Microtubule binding pr 100.0 5.8E-33 1.2E-37 215.8 26.2 264 32-318 122-418 (423)
61 KOG0292 Vesicle coat complex C 100.0 6.2E-34 1.3E-38 243.0 22.7 249 60-322 6-284 (1202)
62 KOG0643 Translation initiation 100.0 3.1E-33 6.8E-38 207.8 23.5 282 4-318 10-317 (327)
63 KOG0288 WD40 repeat protein Ti 100.0 2.2E-34 4.7E-39 226.0 17.9 281 4-316 175-459 (459)
64 KOG0306 WD40-repeat-containing 100.0 7E-33 1.5E-37 232.7 27.5 280 5-319 374-665 (888)
65 PTZ00421 coronin; Provisional 100.0 1.1E-32 2.5E-37 236.2 29.1 240 58-299 70-314 (493)
66 KOG0296 Angio-associated migra 100.0 2.6E-33 5.7E-38 216.7 22.5 264 55-338 56-373 (399)
67 KOG1407 WD40 repeat protein [F 100.0 2.1E-32 4.7E-37 202.7 26.4 274 3-309 19-293 (313)
68 KOG0275 Conserved WD40 repeat- 100.0 9.3E-34 2E-38 216.6 17.9 254 61-321 211-470 (508)
69 PTZ00421 coronin; Provisional 100.0 6.1E-32 1.3E-36 231.8 31.1 254 62-321 19-293 (493)
70 KOG1446 Histone H3 (Lys4) meth 100.0 9.9E-31 2.1E-35 199.2 31.3 283 3-319 13-304 (311)
71 KOG0294 WD40 repeat-containing 100.0 9.2E-32 2E-36 204.5 25.1 269 33-322 9-285 (362)
72 PTZ00420 coronin; Provisional 100.0 3.9E-31 8.4E-36 227.9 31.6 255 31-300 50-318 (568)
73 KOG1446 Histone H3 (Lys4) meth 100.0 6.4E-31 1.4E-35 200.2 29.0 249 58-321 9-265 (311)
74 KOG0268 Sof1-like rRNA process 100.0 4.5E-33 9.9E-38 215.3 16.3 281 5-322 67-349 (433)
75 KOG0772 Uncharacterized conser 100.0 7.4E-32 1.6E-36 217.6 23.2 295 5-318 168-487 (641)
76 KOG0283 WD40 repeat-containing 100.0 7.9E-32 1.7E-36 229.4 24.1 251 2-275 265-577 (712)
77 KOG0274 Cdc4 and related F-box 100.0 3.6E-31 7.8E-36 227.3 27.7 260 32-322 225-486 (537)
78 KOG0289 mRNA splicing factor [ 100.0 2.6E-31 5.6E-36 210.1 24.4 279 7-317 222-505 (506)
79 KOG0643 Translation initiation 100.0 9.2E-31 2E-35 194.7 24.7 267 57-340 4-294 (327)
80 KOG0277 Peroxisomal targeting 100.0 4.4E-32 9.5E-37 200.3 16.7 242 5-273 61-308 (311)
81 PTZ00420 coronin; Provisional 100.0 3.7E-30 8.1E-35 221.8 30.9 226 81-320 50-295 (568)
82 KOG0289 mRNA splicing factor [ 100.0 1.2E-30 2.5E-35 206.4 24.3 257 64-335 220-478 (506)
83 KOG0772 Uncharacterized conser 100.0 2.7E-31 5.8E-36 214.4 20.8 260 52-318 156-445 (641)
84 KOG0288 WD40 repeat protein Ti 100.0 2.9E-32 6.4E-37 214.1 14.2 251 56-323 168-422 (459)
85 KOG0305 Anaphase promoting com 100.0 9.3E-31 2E-35 217.1 23.9 243 4-276 217-463 (484)
86 KOG0313 Microtubule binding pr 100.0 1.5E-30 3.1E-35 202.5 22.7 257 62-339 104-395 (423)
87 KOG0299 U3 snoRNP-associated p 100.0 1.3E-30 2.9E-35 207.5 22.3 256 57-320 136-412 (479)
88 KOG0639 Transducin-like enhanc 100.0 8.8E-31 1.9E-35 211.0 20.7 286 4-318 419-704 (705)
89 KOG0300 WD40 repeat-containing 100.0 1.5E-30 3.2E-35 198.6 20.1 276 31-322 166-480 (481)
90 KOG0299 U3 snoRNP-associated p 100.0 9.5E-30 2.1E-34 202.6 25.2 291 3-318 141-456 (479)
91 KOG0264 Nucleosome remodeling 100.0 4.2E-30 9.1E-35 204.4 21.8 261 2-275 122-405 (422)
92 KOG2055 WD40 repeat protein [G 100.0 1.6E-29 3.5E-34 201.4 25.0 291 3-318 212-512 (514)
93 KOG0264 Nucleosome remodeling 100.0 2.7E-29 5.9E-34 199.8 25.9 307 5-318 41-404 (422)
94 KOG0310 Conserved WD40 repeat- 100.0 8.7E-30 1.9E-34 204.3 23.2 241 63-318 26-268 (487)
95 KOG0640 mRNA cleavage stimulat 100.0 2.4E-30 5.3E-35 196.6 19.0 274 56-336 105-399 (430)
96 KOG0647 mRNA export protein (c 100.0 3.9E-29 8.4E-34 189.2 24.9 272 3-306 26-311 (347)
97 KOG1332 Vesicle coat complex C 100.0 3.7E-30 8E-35 189.2 18.5 264 59-327 7-295 (299)
98 KOG0647 mRNA export protein (c 100.0 2.1E-29 4.6E-34 190.6 22.0 245 62-322 26-285 (347)
99 KOG1036 Mitotic spindle checkp 100.0 1.4E-28 3.1E-33 186.7 25.6 269 3-308 12-294 (323)
100 KOG0771 Prolactin regulatory e 100.0 5.8E-29 1.3E-33 196.5 23.1 202 116-319 148-355 (398)
101 KOG0274 Cdc4 and related F-box 100.0 6.8E-29 1.5E-33 213.4 24.1 252 61-339 206-460 (537)
102 KOG1539 WD repeat protein [Gen 100.0 5.4E-28 1.2E-32 205.7 28.1 195 113-317 449-647 (910)
103 KOG2096 WD40 repeat protein [G 100.0 6.8E-29 1.5E-33 189.4 20.4 254 53-316 76-400 (420)
104 KOG0308 Conserved WD40 repeat- 100.0 2.5E-29 5.4E-34 208.3 19.5 278 20-320 38-329 (735)
105 KOG0973 Histone transcription 100.0 7.5E-29 1.6E-33 216.7 23.3 252 62-321 12-315 (942)
106 KOG0269 WD40 repeat-containing 100.0 1.9E-29 4.1E-34 212.8 17.6 267 64-339 40-315 (839)
107 KOG0269 WD40 repeat-containing 100.0 3.7E-29 8E-34 211.1 19.2 270 36-319 61-341 (839)
108 KOG1408 WD40 repeat protein [F 100.0 4.3E-28 9.4E-33 203.3 25.1 289 9-319 329-714 (1080)
109 KOG0308 Conserved WD40 repeat- 100.0 2.7E-29 5.9E-34 208.0 17.7 247 68-322 29-289 (735)
110 KOG0278 Serine/threonine kinas 100.0 1.1E-29 2.4E-34 187.4 13.4 263 57-339 8-273 (334)
111 KOG0268 Sof1-like rRNA process 100.0 2.2E-29 4.8E-34 195.0 13.5 245 57-321 60-305 (433)
112 KOG1036 Mitotic spindle checkp 100.0 1.2E-27 2.6E-32 181.7 21.9 242 63-323 13-267 (323)
113 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 5.5E-26 1.2E-30 187.9 34.1 262 33-321 9-282 (300)
114 KOG2048 WD40 repeat protein [G 100.0 1.2E-26 2.6E-31 193.3 29.7 284 4-319 25-320 (691)
115 KOG0641 WD40 repeat protein [G 100.0 2.5E-26 5.4E-31 167.5 27.6 247 62-319 31-304 (350)
116 KOG0646 WD40 repeat protein [G 100.0 3.3E-27 7.2E-32 188.5 25.1 239 63-317 81-349 (476)
117 KOG0294 WD40 repeat-containing 100.0 3.8E-27 8.2E-32 179.5 23.6 237 4-276 43-283 (362)
118 KOG0301 Phospholipase A2-activ 100.0 4.2E-27 9.1E-32 196.5 26.0 257 31-319 31-289 (745)
119 KOG2445 Nuclear pore complex c 100.0 2.9E-27 6.3E-32 179.6 22.8 264 59-329 9-329 (361)
120 KOG4328 WD40 protein [Function 100.0 3.8E-27 8.2E-32 187.8 23.7 291 4-317 186-494 (498)
121 KOG2106 Uncharacterized conser 100.0 4.1E-26 9E-31 184.1 29.6 274 6-315 202-518 (626)
122 KOG1063 RNA polymerase II elon 100.0 2.2E-27 4.7E-32 198.2 22.9 322 5-339 192-670 (764)
123 KOG1332 Vesicle coat complex C 100.0 2.3E-27 5E-32 174.5 18.9 239 24-274 22-286 (299)
124 KOG1274 WD40 repeat protein [G 100.0 8E-27 1.7E-31 200.6 25.0 244 61-319 11-263 (933)
125 KOG0267 Microtubule severing p 100.0 4.6E-29 1E-33 209.0 10.8 237 59-310 24-260 (825)
126 KOG0300 WD40 repeat-containing 100.0 1.6E-27 3.6E-32 182.0 18.2 269 54-339 139-450 (481)
127 KOG1273 WD40 repeat protein [G 100.0 1.7E-26 3.6E-31 176.1 23.1 285 7-324 26-328 (405)
128 KOG0646 WD40 repeat protein [G 100.0 3.8E-26 8.3E-31 182.5 25.2 232 76-320 51-309 (476)
129 KOG0639 Transducin-like enhanc 100.0 2.4E-27 5.3E-32 191.2 17.5 248 61-321 417-666 (705)
130 KOG1274 WD40 repeat protein [G 100.0 6.4E-26 1.4E-30 195.1 26.6 275 5-315 14-297 (933)
131 KOG2106 Uncharacterized conser 100.0 3E-25 6.6E-30 179.2 28.6 287 5-321 155-480 (626)
132 KOG0321 WD40 repeat-containing 100.0 1.6E-26 3.5E-31 191.4 21.7 293 8-319 53-392 (720)
133 KOG1539 WD repeat protein [Gen 100.0 5.8E-25 1.3E-29 187.4 31.6 286 7-321 162-609 (910)
134 KOG4283 Transcription-coupled 100.0 1.1E-25 2.4E-30 170.2 23.8 290 3-317 42-364 (397)
135 KOG4378 Nuclear protein COP1 [ 100.0 8.9E-27 1.9E-31 187.7 18.9 287 34-340 11-300 (673)
136 KOG2048 WD40 repeat protein [G 100.0 4.2E-25 9.2E-30 184.2 28.5 266 61-340 23-298 (691)
137 KOG0307 Vesicle coat complex C 100.0 2.8E-27 6E-32 208.0 15.9 303 5-321 7-330 (1049)
138 KOG0290 Conserved WD40 repeat- 100.0 2.7E-25 5.9E-30 167.7 24.2 296 2-309 42-357 (364)
139 KOG0270 WD40 repeat-containing 99.9 1.6E-25 3.4E-30 178.0 22.2 288 20-321 138-452 (463)
140 KOG0301 Phospholipase A2-activ 99.9 1.1E-25 2.3E-30 188.2 21.6 244 53-318 4-249 (745)
141 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.2E-24 1.1E-28 176.1 31.6 260 5-298 31-300 (300)
142 KOG2055 WD40 repeat protein [G 99.9 2.3E-25 5.1E-30 177.9 21.2 262 63-338 213-487 (514)
143 KOG4283 Transcription-coupled 99.9 1.7E-25 3.7E-30 169.2 19.0 206 111-321 42-279 (397)
144 KOG0267 Microtubule severing p 99.9 4.9E-27 1.1E-31 197.0 11.0 214 32-266 47-260 (825)
145 KOG4378 Nuclear protein COP1 [ 99.9 2.6E-25 5.6E-30 179.4 20.1 267 7-300 37-305 (673)
146 KOG0302 Ribosome Assembly prot 99.9 6.6E-25 1.4E-29 171.1 20.8 256 52-312 140-433 (440)
147 KOG1034 Transcriptional repres 99.9 9.5E-25 2.1E-29 167.4 21.3 292 2-317 36-382 (385)
148 KOG2919 Guanine nucleotide-bin 99.9 1.2E-24 2.5E-29 166.7 21.1 269 65-340 51-347 (406)
149 KOG1009 Chromatin assembly com 99.9 3E-24 6.4E-29 169.0 23.8 308 4-321 13-375 (434)
150 KOG1273 WD40 repeat protein [G 99.9 1.7E-24 3.6E-29 165.3 20.7 243 66-322 26-284 (405)
151 KOG0270 WD40 repeat-containing 99.9 7E-25 1.5E-29 174.4 18.8 256 8-281 177-456 (463)
152 KOG1007 WD repeat protein TSSC 99.9 4.1E-24 8.9E-29 161.3 21.6 274 33-318 38-361 (370)
153 KOG0302 Ribosome Assembly prot 99.9 2.3E-24 5E-29 168.1 20.8 230 33-272 173-436 (440)
154 KOG2919 Guanine nucleotide-bin 99.9 1.8E-23 3.9E-28 160.2 24.4 290 8-320 53-369 (406)
155 KOG1408 WD40 repeat protein [F 99.9 1.6E-24 3.5E-29 182.1 19.2 244 3-275 458-714 (1080)
156 KOG0650 WD40 repeat nucleolar 99.9 3.2E-24 6.9E-29 176.7 19.7 249 54-319 391-681 (733)
157 KOG1063 RNA polymerase II elon 99.9 2.2E-23 4.9E-28 174.4 24.8 289 7-318 319-699 (764)
158 KOG4328 WD40 protein [Function 99.9 7.5E-24 1.6E-28 169.2 20.0 256 57-319 180-451 (498)
159 KOG2445 Nuclear pore complex c 99.9 7.9E-23 1.7E-27 155.6 23.7 254 5-274 14-318 (361)
160 KOG0303 Actin-binding protein 99.9 2.9E-23 6.2E-28 163.0 21.4 237 59-299 77-320 (472)
161 KOG1538 Uncharacterized conser 99.9 2.1E-23 4.5E-28 174.4 21.2 279 6-319 14-294 (1081)
162 KOG0307 Vesicle coat complex C 99.9 3.8E-24 8.3E-29 188.5 17.0 256 4-277 64-330 (1049)
163 KOG0650 WD40 repeat nucleolar 99.9 4.3E-23 9.3E-28 170.2 21.3 287 3-316 399-733 (733)
164 KOG0321 WD40 repeat-containing 99.9 3.6E-23 7.8E-28 171.7 19.3 264 67-339 53-366 (720)
165 PRK11028 6-phosphogluconolacto 99.9 9.8E-21 2.1E-25 158.2 33.1 275 32-321 9-307 (330)
166 KOG0642 Cell-cycle nuclear pro 99.9 8.4E-24 1.8E-28 173.1 13.9 262 53-321 284-564 (577)
167 KOG2096 WD40 repeat protein [G 99.9 1.6E-22 3.5E-27 154.8 18.4 203 110-320 84-310 (420)
168 KOG2110 Uncharacterized conser 99.9 4.3E-21 9.3E-26 149.8 26.2 244 63-321 5-251 (391)
169 KOG1445 Tumor-specific antigen 99.9 4.4E-22 9.4E-27 165.7 20.1 159 156-319 629-799 (1012)
170 KOG0303 Actin-binding protein 99.9 2.4E-21 5.2E-26 152.4 21.7 205 110-321 79-297 (472)
171 KOG1034 Transcriptional repres 99.9 6.1E-22 1.3E-26 152.1 17.8 246 4-274 89-383 (385)
172 KOG1007 WD repeat protein TSSC 99.9 1.9E-21 4.1E-26 147.0 19.7 261 4-275 63-362 (370)
173 KOG0649 WD40 repeat protein [G 99.9 2.9E-20 6.3E-25 137.4 25.2 283 6-315 12-313 (325)
174 KOG1587 Cytoplasmic dynein int 99.9 8.5E-21 1.9E-25 162.5 26.0 267 36-318 223-516 (555)
175 KOG0322 G-protein beta subunit 99.9 1.7E-21 3.7E-26 145.4 18.0 250 53-317 4-322 (323)
176 KOG1188 WD40 repeat protein [G 99.9 2.1E-21 4.6E-26 149.9 18.7 270 31-318 46-346 (376)
177 COG2319 FOG: WD40 repeat [Gene 99.9 8.8E-19 1.9E-23 151.9 36.0 287 4-321 65-362 (466)
178 KOG4227 WD40 repeat protein [G 99.9 4.9E-21 1.1E-25 150.8 17.7 264 52-321 45-325 (609)
179 COG2319 FOG: WD40 repeat [Gene 99.9 2.3E-19 5.1E-24 155.5 29.7 250 58-321 60-317 (466)
180 KOG0644 Uncharacterized conser 99.9 1E-21 2.3E-26 167.9 11.0 251 57-321 184-471 (1113)
181 KOG0290 Conserved WD40 repeat- 99.9 8.1E-20 1.8E-24 138.4 19.3 247 2-270 94-361 (364)
182 KOG1524 WD40 repeat-containing 99.9 6.4E-20 1.4E-24 149.9 20.0 210 76-317 76-285 (737)
183 KOG0642 Cell-cycle nuclear pro 99.9 9.6E-21 2.1E-25 155.4 14.8 245 31-281 312-568 (577)
184 KOG1523 Actin-related protein 99.9 5.4E-19 1.2E-23 135.7 22.9 254 4-309 10-269 (361)
185 KOG0322 G-protein beta subunit 99.8 8.7E-20 1.9E-24 136.4 15.9 228 31-273 31-322 (323)
186 KOG4227 WD40 repeat protein [G 99.8 3.3E-19 7.2E-24 140.6 19.7 293 2-317 54-386 (609)
187 KOG1445 Tumor-specific antigen 99.8 2.4E-20 5.2E-25 155.4 14.0 242 31-277 599-847 (1012)
188 KOG0649 WD40 repeat protein [G 99.8 2.6E-18 5.6E-23 127.2 22.8 237 64-318 11-274 (325)
189 PRK01742 tolB translocation pr 99.8 4.6E-19 9.9E-24 152.6 22.0 220 58-299 198-426 (429)
190 PRK01742 tolB translocation pr 99.8 4E-19 8.7E-24 152.9 21.1 231 84-338 183-420 (429)
191 KOG1587 Cytoplasmic dynein int 99.8 8.9E-19 1.9E-23 150.2 22.9 258 2-275 240-517 (555)
192 KOG1963 WD40 repeat protein [G 99.8 4.7E-18 1E-22 146.7 26.8 270 33-319 179-488 (792)
193 KOG1517 Guanine nucleotide bin 99.8 2.5E-18 5.4E-23 151.1 24.8 292 7-321 1067-1384(1387)
194 KOG1538 Uncharacterized conser 99.8 2.4E-19 5.2E-24 150.4 17.7 231 65-318 14-252 (1081)
195 KOG2139 WD40 repeat protein [G 99.8 6.2E-18 1.3E-22 132.0 24.1 289 7-320 101-433 (445)
196 PRK11028 6-phosphogluconolacto 99.8 3.2E-17 7E-22 137.0 30.5 246 6-274 36-304 (330)
197 KOG2111 Uncharacterized conser 99.8 1.7E-17 3.8E-22 127.4 24.9 241 66-321 8-259 (346)
198 KOG0771 Prolactin regulatory e 99.8 3.4E-19 7.4E-24 141.5 15.3 195 67-275 148-355 (398)
199 PF02239 Cytochrom_D1: Cytochr 99.8 1E-16 2.2E-21 133.8 30.8 268 33-322 14-351 (369)
200 KOG1963 WD40 repeat protein [G 99.8 4.8E-17 1E-21 140.5 28.6 294 3-320 204-540 (792)
201 KOG1009 Chromatin assembly com 99.8 9.9E-19 2.1E-23 138.2 16.7 195 63-263 13-249 (434)
202 KOG2110 Uncharacterized conser 99.8 4.2E-16 9.1E-21 122.2 30.0 278 6-320 7-332 (391)
203 KOG1272 WD40-repeat-containing 99.8 1.5E-19 3.2E-24 145.2 10.8 235 63-319 129-363 (545)
204 KOG1310 WD40 repeat protein [G 99.8 4.5E-19 9.8E-24 145.5 13.6 218 55-282 42-311 (758)
205 KOG1188 WD40 repeat protein [G 99.8 1E-17 2.2E-22 129.7 19.5 232 76-318 41-297 (376)
206 KOG1524 WD40 repeat-containing 99.8 1.1E-18 2.3E-23 142.9 14.7 234 62-309 13-247 (737)
207 PRK03629 tolB translocation pr 99.8 2.2E-16 4.7E-21 135.8 27.5 222 59-298 194-427 (429)
208 KOG1240 Protein kinase contain 99.8 3.1E-17 6.6E-22 146.4 22.5 270 48-322 1033-1338(1431)
209 KOG1517 Guanine nucleotide bin 99.8 6.2E-17 1.3E-21 142.5 23.7 246 65-320 1066-1335(1387)
210 KOG2394 WD40 protein DMR-N9 [G 99.8 2E-17 4.4E-22 135.5 18.8 243 66-321 126-455 (636)
211 KOG1523 Actin-related protein 99.8 1.3E-17 2.9E-22 128.1 16.6 202 112-321 10-239 (361)
212 KOG3881 Uncharacterized conser 99.8 5.8E-17 1.3E-21 127.8 20.5 223 62-299 104-342 (412)
213 KOG1240 Protein kinase contain 99.8 3E-16 6.6E-21 140.2 27.1 305 1-316 1045-1431(1431)
214 PRK03629 tolB translocation pr 99.8 5.7E-16 1.2E-20 133.2 27.4 206 86-311 180-396 (429)
215 PF10282 Lactonase: Lactonase, 99.8 1.9E-14 4.2E-19 120.4 35.9 275 33-320 11-324 (345)
216 PRK05137 tolB translocation pr 99.8 4.3E-16 9.3E-21 134.7 26.7 222 58-298 196-432 (435)
217 PF08662 eIF2A: Eukaryotic tra 99.8 6.8E-17 1.5E-21 122.9 19.0 152 158-319 9-180 (194)
218 KOG2139 WD40 repeat protein [G 99.8 1.2E-16 2.7E-21 124.9 20.3 231 64-311 99-368 (445)
219 KOG2394 WD40 protein DMR-N9 [G 99.8 5.2E-17 1.1E-21 133.1 18.4 174 72-254 182-384 (636)
220 KOG1334 WD40 repeat protein [G 99.8 1.7E-17 3.7E-22 134.3 14.3 289 3-318 141-466 (559)
221 KOG3881 Uncharacterized conser 99.8 2.2E-16 4.8E-21 124.6 19.7 250 62-321 54-323 (412)
222 KOG1272 WD40-repeat-containing 99.8 2.8E-18 6E-23 138.0 9.2 197 114-322 131-327 (545)
223 PRK04922 tolB translocation pr 99.8 8.8E-16 1.9E-20 132.6 25.1 222 59-298 199-432 (433)
224 PRK02889 tolB translocation pr 99.8 5.7E-16 1.2E-20 133.3 23.7 199 111-321 194-404 (427)
225 PRK05137 tolB translocation pr 99.8 1.8E-15 4E-20 130.8 26.3 217 86-320 183-412 (435)
226 PRK04922 tolB translocation pr 99.7 2E-15 4.4E-20 130.4 26.1 216 86-321 185-412 (433)
227 PRK02889 tolB translocation pr 99.7 1.2E-15 2.6E-20 131.3 24.4 223 59-299 191-425 (427)
228 KOG1334 WD40 repeat protein [G 99.7 4.4E-17 9.5E-22 132.0 14.3 255 55-319 134-425 (559)
229 KOG4497 Uncharacterized conser 99.7 2.9E-15 6.4E-20 116.0 23.3 271 7-311 51-425 (447)
230 KOG4497 Uncharacterized conser 99.7 1.4E-17 3E-22 128.7 10.2 223 68-317 13-239 (447)
231 KOG0644 Uncharacterized conser 99.7 3E-17 6.5E-22 141.1 12.8 239 5-277 191-471 (1113)
232 PF08662 eIF2A: Eukaryotic tra 99.7 8.9E-16 1.9E-20 116.8 18.6 156 116-280 9-184 (194)
233 KOG2321 WD40 repeat protein [G 99.7 5.7E-15 1.2E-19 122.3 23.3 286 4-326 51-351 (703)
234 KOG2111 Uncharacterized conser 99.7 6.8E-14 1.5E-18 107.9 26.8 283 4-320 5-324 (346)
235 KOG1310 WD40 repeat protein [G 99.7 2.8E-16 6E-21 129.3 14.3 209 109-322 47-307 (758)
236 KOG1354 Serine/threonine prote 99.7 1.2E-14 2.7E-19 113.1 21.4 252 6-276 27-361 (433)
237 TIGR02800 propeller_TolB tol-p 99.7 2.6E-14 5.7E-19 123.7 26.0 207 86-312 171-388 (417)
238 KOG2041 WD40 repeat protein [G 99.7 1.4E-14 3E-19 123.3 22.0 294 1-319 11-338 (1189)
239 COG2706 3-carboxymuconate cycl 99.7 2.9E-12 6.3E-17 101.1 32.3 277 33-321 14-324 (346)
240 PRK00178 tolB translocation pr 99.7 2.1E-13 4.6E-18 118.2 27.6 222 59-298 194-427 (430)
241 PRK00178 tolB translocation pr 99.7 2.5E-13 5.4E-18 117.8 27.9 216 86-321 180-407 (430)
242 PRK01029 tolB translocation pr 99.7 1.8E-13 3.9E-18 117.4 26.3 225 61-300 182-426 (428)
243 PF10282 Lactonase: Lactonase, 99.7 7.3E-12 1.6E-16 105.0 34.7 255 33-296 60-345 (345)
244 TIGR02800 propeller_TolB tol-p 99.7 2.2E-13 4.7E-18 118.0 26.3 199 59-275 185-398 (417)
245 KOG0280 Uncharacterized conser 99.6 1.7E-13 3.7E-18 104.7 21.1 293 11-316 16-331 (339)
246 KOG2315 Predicted translation 99.6 6.4E-13 1.4E-17 110.1 26.1 231 67-320 129-392 (566)
247 PRK04792 tolB translocation pr 99.6 5E-13 1.1E-17 115.6 25.6 222 59-298 213-446 (448)
248 KOG1354 Serine/threonine prote 99.6 4.4E-14 9.6E-19 110.1 16.7 250 63-319 25-360 (433)
249 PRK04792 tolB translocation pr 99.6 6.5E-13 1.4E-17 114.9 25.5 218 86-321 199-426 (448)
250 PRK01029 tolB translocation pr 99.6 8.7E-13 1.9E-17 113.2 25.2 217 86-318 166-403 (428)
251 TIGR02658 TTQ_MADH_Hv methylam 99.6 1.1E-11 2.4E-16 101.5 30.2 266 35-322 27-334 (352)
252 KOG1409 Uncharacterized conser 99.6 1.6E-13 3.5E-18 107.0 17.4 255 52-321 13-273 (404)
253 KOG0974 WD-repeat protein WDR6 99.6 1E-13 2.2E-18 122.5 18.2 198 114-321 89-291 (967)
254 KOG4547 WD40 repeat-containing 99.6 2.1E-12 4.6E-17 107.7 21.5 192 122-322 3-224 (541)
255 KOG2321 WD40 repeat protein [G 99.6 2.9E-13 6.3E-18 112.4 15.9 197 67-275 137-344 (703)
256 COG2706 3-carboxymuconate cycl 99.5 1.5E-10 3.2E-15 91.7 29.6 279 4-297 39-345 (346)
257 KOG0974 WD-repeat protein WDR6 99.5 3E-13 6.6E-18 119.5 15.3 191 74-275 98-289 (967)
258 COG4946 Uncharacterized protei 99.5 1.2E-11 2.7E-16 100.8 23.1 144 61-214 357-505 (668)
259 PF02239 Cytochrom_D1: Cytochr 99.5 8.2E-12 1.8E-16 104.6 22.4 185 128-319 10-203 (369)
260 PF04762 IKI3: IKI3 family; I 99.5 1.7E-10 3.8E-15 107.0 32.9 298 3-322 74-460 (928)
261 KOG1064 RAVE (regulator of V-A 99.5 1.7E-13 3.8E-18 127.2 13.0 205 58-286 2203-2410(2439)
262 KOG0280 Uncharacterized conser 99.5 3.8E-12 8.3E-17 97.4 17.7 253 5-275 70-334 (339)
263 KOG2315 Predicted translation 99.5 2.1E-11 4.6E-16 101.2 22.8 241 33-299 144-411 (566)
264 PLN02919 haloacid dehalogenase 99.5 3.7E-10 8E-15 106.8 32.3 249 66-321 570-891 (1057)
265 COG4946 Uncharacterized protei 99.5 1E-10 2.2E-15 95.6 24.1 223 71-307 274-507 (668)
266 PRK04043 tolB translocation pr 99.5 2.2E-10 4.7E-15 97.9 27.2 197 113-321 188-401 (419)
267 KOG4547 WD40 repeat-containing 99.5 1.7E-11 3.7E-16 102.4 19.5 192 72-275 2-221 (541)
268 KOG2041 WD40 repeat protein [G 99.4 9.1E-12 2E-16 106.5 16.7 235 64-309 15-279 (1189)
269 COG5354 Uncharacterized protei 99.4 1E-10 2.2E-15 96.2 21.3 243 62-319 31-307 (561)
270 COG5354 Uncharacterized protei 99.4 4.1E-10 8.9E-15 92.8 24.6 282 3-318 31-348 (561)
271 KOG2314 Translation initiation 99.4 8.6E-11 1.9E-15 97.7 20.6 244 66-323 213-484 (698)
272 PF04762 IKI3: IKI3 family; I 99.4 2.3E-09 5E-14 99.7 32.2 289 5-318 22-379 (928)
273 KOG1064 RAVE (regulator of V-A 99.4 3.9E-12 8.5E-17 118.5 13.5 195 111-323 2207-2403(2439)
274 PRK04043 tolB translocation pr 99.4 6.8E-10 1.5E-14 94.9 26.2 198 65-279 189-405 (419)
275 KOG2314 Translation initiation 99.4 3.9E-10 8.4E-15 93.9 23.2 287 7-318 252-573 (698)
276 KOG1409 Uncharacterized conser 99.4 5.9E-11 1.3E-15 93.0 17.4 202 4-233 68-271 (404)
277 KOG4190 Uncharacterized conser 99.4 3.7E-12 8E-17 105.9 11.1 251 54-316 726-986 (1034)
278 KOG0309 Conserved WD40 repeat- 99.4 1.1E-11 2.5E-16 106.2 12.5 250 5-275 68-340 (1081)
279 KOG4532 WD40-like repeat conta 99.4 7.4E-10 1.6E-14 84.1 20.6 225 33-275 92-332 (344)
280 KOG3914 WD repeat protein WDR4 99.3 2E-11 4.3E-16 97.5 12.5 167 65-242 64-233 (390)
281 PLN02919 haloacid dehalogenase 99.3 4.1E-09 8.8E-14 99.9 30.1 209 64-278 624-892 (1057)
282 KOG1912 WD40 repeat protein [G 99.3 2.5E-10 5.5E-15 98.7 19.3 279 8-319 19-365 (1062)
283 COG5170 CDC55 Serine/threonine 99.3 1.8E-10 3.8E-15 89.3 16.1 253 3-274 25-367 (460)
284 KOG4714 Nucleoporin [Nuclear s 99.3 2.4E-10 5.1E-15 86.3 16.3 212 6-233 38-255 (319)
285 COG5170 CDC55 Serine/threonine 99.3 5.4E-11 1.2E-15 92.1 13.2 248 63-317 26-366 (460)
286 KOG4190 Uncharacterized conser 99.3 3.2E-11 7E-16 100.4 12.3 267 31-314 753-1032(1034)
287 PF08450 SGL: SMP-30/Gluconola 99.3 1.9E-08 4.1E-13 80.5 27.7 216 68-305 4-242 (246)
288 PF15492 Nbas_N: Neuroblastoma 99.3 4.5E-09 9.7E-14 81.0 22.4 240 18-282 8-267 (282)
289 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.9E-08 4E-13 82.8 27.6 230 33-282 75-338 (352)
290 KOG4532 WD40-like repeat conta 99.3 1.2E-09 2.5E-14 83.1 18.6 239 68-318 72-331 (344)
291 PF07433 DUF1513: Protein of u 99.3 9.7E-09 2.1E-13 81.5 24.7 228 65-309 6-277 (305)
292 KOG0309 Conserved WD40 repeat- 99.3 3.2E-11 6.8E-16 103.6 11.1 261 63-336 24-302 (1081)
293 KOG1912 WD40 repeat protein [G 99.3 2.8E-09 6.1E-14 92.4 21.4 101 217-318 440-551 (1062)
294 PF15492 Nbas_N: Neuroblastoma 99.3 2.3E-08 4.9E-13 77.2 24.1 231 69-321 3-262 (282)
295 TIGR03300 assembly_YfgL outer 99.2 3.6E-08 7.7E-13 84.3 26.7 222 74-320 104-340 (377)
296 TIGR03300 assembly_YfgL outer 99.2 2.6E-08 5.5E-13 85.2 25.5 221 75-315 145-376 (377)
297 KOG3914 WD repeat protein WDR4 99.2 1.6E-09 3.5E-14 86.8 14.2 160 156-322 64-227 (390)
298 PF07433 DUF1513: Protein of u 99.1 1.7E-07 3.6E-12 74.6 24.9 236 5-270 5-281 (305)
299 KOG1832 HIV-1 Vpr-binding prot 99.1 3.8E-11 8.3E-16 105.2 4.2 220 56-306 1094-1319(1516)
300 PF13360 PQQ_2: PQQ-like domai 99.1 1.1E-07 2.3E-12 75.8 22.6 219 84-321 2-233 (238)
301 KOG1920 IkappaB kinase complex 99.1 1.4E-07 3.1E-12 86.1 24.8 204 62-277 67-325 (1265)
302 PF08450 SGL: SMP-30/Gluconola 99.1 2.7E-06 5.8E-11 68.1 29.6 186 66-263 42-244 (246)
303 PF13360 PQQ_2: PQQ-like domai 99.0 6.7E-07 1.5E-11 71.3 25.1 187 74-280 35-236 (238)
304 KOG2695 WD40 repeat protein [G 99.0 9.4E-10 2E-14 86.5 7.7 142 62-206 251-401 (425)
305 KOG0882 Cyclophilin-related pe 99.0 1.4E-08 3E-13 82.8 14.1 247 62-320 8-307 (558)
306 KOG4714 Nucleoporin [Nuclear s 99.0 3.7E-09 8E-14 80.0 9.6 146 165-318 100-254 (319)
307 KOG2695 WD40 repeat protein [G 99.0 2.7E-09 5.8E-14 84.0 9.1 151 79-243 228-387 (425)
308 KOG1920 IkappaB kinase complex 98.9 7.5E-07 1.6E-11 81.6 23.4 204 111-318 67-322 (1265)
309 KOG1275 PAB-dependent poly(A) 98.9 2.7E-08 5.9E-13 88.0 14.0 181 75-272 147-340 (1118)
310 KOG1645 RING-finger-containing 98.9 1.1E-07 2.3E-12 76.7 16.1 244 58-319 188-462 (463)
311 KOG2066 Vacuolar assembly/sort 98.9 1.6E-07 3.6E-12 82.1 17.3 172 20-232 50-233 (846)
312 KOG2066 Vacuolar assembly/sort 98.9 2.9E-07 6.3E-12 80.6 18.6 183 112-318 39-233 (846)
313 PF00400 WD40: WD domain, G-be 98.9 7.8E-09 1.7E-13 56.4 6.0 37 55-91 3-39 (39)
314 KOG1832 HIV-1 Vpr-binding prot 98.9 3.3E-09 7.1E-14 93.5 6.0 255 4-307 1101-1378(1516)
315 PF11768 DUF3312: Protein of u 98.9 1.9E-05 4.1E-10 67.6 27.6 113 156-275 207-330 (545)
316 PRK11138 outer membrane biogen 98.9 6.4E-06 1.4E-10 70.8 25.7 221 75-317 160-393 (394)
317 PF00400 WD40: WD domain, G-be 98.9 1.1E-08 2.5E-13 55.8 5.8 39 234-272 1-39 (39)
318 PF00930 DPPIV_N: Dipeptidyl p 98.9 4.9E-06 1.1E-10 70.3 24.4 237 72-320 1-315 (353)
319 PF14583 Pectate_lyase22: Olig 98.9 3.1E-05 6.8E-10 63.9 29.0 273 33-322 56-385 (386)
320 PRK11138 outer membrane biogen 98.8 3.6E-06 7.9E-11 72.3 21.9 228 74-319 68-313 (394)
321 PF00930 DPPIV_N: Dipeptidyl p 98.8 1.6E-05 3.4E-10 67.2 25.0 236 63-307 42-346 (353)
322 KOG1275 PAB-dependent poly(A) 98.8 3.5E-07 7.6E-12 81.2 15.3 183 123-316 146-340 (1118)
323 KOG2114 Vacuolar assembly/sort 98.8 4.7E-06 1E-10 73.9 21.7 205 69-286 29-255 (933)
324 PF04053 Coatomer_WDAD: Coatom 98.8 1.9E-05 4.2E-10 67.8 25.1 228 56-319 25-263 (443)
325 PF11768 DUF3312: Protein of u 98.8 4.4E-07 9.6E-12 77.1 15.0 118 64-187 206-332 (545)
326 KOG3617 WD40 and TPR repeat-co 98.7 1.1E-06 2.5E-11 77.6 17.2 113 8-142 19-131 (1416)
327 KOG3617 WD40 and TPR repeat-co 98.7 3E-07 6.5E-12 81.1 13.7 111 66-185 18-132 (1416)
328 KOG0882 Cyclophilin-related pe 98.7 3.5E-07 7.7E-12 74.9 12.2 206 111-321 8-234 (558)
329 PRK02888 nitrous-oxide reducta 98.7 7.1E-06 1.5E-10 71.7 20.5 230 74-319 140-405 (635)
330 PRK02888 nitrous-oxide reducta 98.7 7.2E-06 1.6E-10 71.7 19.9 184 71-275 200-405 (635)
331 PF06433 Me-amine-dh_H: Methyl 98.7 9.9E-05 2.2E-09 59.9 24.5 243 67-321 39-323 (342)
332 KOG2114 Vacuolar assembly/sort 98.6 1.6E-05 3.4E-10 70.7 21.3 179 57-241 58-252 (933)
333 KOG4649 PQQ (pyrrolo-quinoline 98.6 7.7E-05 1.7E-09 57.4 21.7 110 75-193 23-132 (354)
334 COG3391 Uncharacterized conser 98.6 0.00027 5.8E-09 60.4 27.5 241 65-320 32-285 (381)
335 PF05694 SBP56: 56kDa selenium 98.6 0.00016 3.5E-09 60.4 24.7 241 33-276 35-344 (461)
336 COG3391 Uncharacterized conser 98.6 8.6E-05 1.9E-09 63.3 23.8 224 65-299 75-309 (381)
337 KOG1008 Uncharacterized conser 98.6 2.2E-08 4.8E-13 85.3 2.0 197 64-275 57-276 (783)
338 COG0823 TolB Periplasmic compo 98.6 7.4E-06 1.6E-10 70.1 16.5 185 113-308 193-389 (425)
339 PF06977 SdiA-regulated: SdiA- 98.5 0.00022 4.7E-09 56.3 24.0 201 58-271 16-247 (248)
340 PF08596 Lgl_C: Lethal giant l 98.5 0.0001 2.2E-09 62.5 22.4 251 65-317 3-334 (395)
341 KOG1897 Damage-specific DNA bi 98.5 0.00055 1.2E-08 62.4 27.5 154 156-319 776-943 (1096)
342 COG0823 TolB Periplasmic compo 98.5 6.7E-06 1.5E-10 70.3 15.1 166 135-309 174-346 (425)
343 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00019 4.1E-09 55.3 20.6 70 74-151 62-132 (354)
344 KOG1008 Uncharacterized conser 98.5 1.1E-07 2.3E-12 81.2 3.2 201 112-319 56-276 (783)
345 PF06977 SdiA-regulated: SdiA- 98.4 0.00025 5.3E-09 56.0 20.4 195 113-315 22-247 (248)
346 cd00216 PQQ_DH Dehydrogenases 98.4 0.0014 3.1E-08 58.0 27.3 194 84-283 174-433 (488)
347 PF03178 CPSF_A: CPSF A subuni 98.4 9.2E-05 2E-09 61.8 18.7 178 134-319 2-203 (321)
348 PRK13616 lipoprotein LpqB; Pro 98.4 8.6E-05 1.9E-09 66.4 19.3 158 155-322 350-529 (591)
349 PF08596 Lgl_C: Lethal giant l 98.4 0.00058 1.3E-08 58.1 23.1 205 57-264 80-326 (395)
350 KOG4640 Anaphase-promoting com 98.3 2.9E-06 6.3E-11 72.7 9.0 94 113-207 21-115 (665)
351 cd00216 PQQ_DH Dehydrogenases 98.3 0.00073 1.6E-08 59.8 24.4 235 76-321 111-427 (488)
352 PF02897 Peptidase_S9_N: Proly 98.3 0.0016 3.5E-08 56.6 26.6 224 66-301 126-383 (414)
353 PF04841 Vps16_N: Vps16, N-ter 98.3 0.0015 3.2E-08 56.3 25.2 211 69-301 34-272 (410)
354 COG3490 Uncharacterized protei 98.3 0.00048 1E-08 53.9 19.5 241 66-318 70-348 (366)
355 KOG1645 RING-finger-containing 98.3 1.1E-05 2.3E-10 65.6 10.3 157 136-301 175-343 (463)
356 COG3386 Gluconolactonase [Carb 98.3 0.0014 3.1E-08 53.6 23.9 221 68-308 29-275 (307)
357 PF04053 Coatomer_WDAD: Coatom 98.3 6.2E-05 1.3E-09 64.8 15.1 166 113-299 33-207 (443)
358 PF08553 VID27: VID27 cytoplas 98.2 3.7E-05 8.1E-10 69.8 14.1 147 166-318 493-647 (794)
359 PF03178 CPSF_A: CPSF A subuni 98.2 0.001 2.2E-08 55.6 21.9 182 124-315 42-262 (321)
360 KOG3621 WD40 repeat-containing 98.2 2.6E-05 5.7E-10 67.9 12.4 118 62-185 32-155 (726)
361 PRK13616 lipoprotein LpqB; Pro 98.1 0.00066 1.4E-08 60.9 19.8 187 64-269 350-563 (591)
362 KOG3621 WD40 repeat-containing 98.1 6.6E-05 1.4E-09 65.5 12.8 201 111-321 32-247 (726)
363 KOG4640 Anaphase-promoting com 98.1 1.9E-05 4.1E-10 67.9 9.0 93 199-298 22-115 (665)
364 PF06433 Me-amine-dh_H: Methyl 98.1 0.0034 7.3E-08 51.3 23.6 205 66-284 97-330 (342)
365 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0053 1.2E-07 52.9 24.1 139 119-283 185-323 (410)
366 PF02897 Peptidase_S9_N: Proly 98.0 0.0034 7.3E-08 54.6 21.8 200 115-320 126-357 (414)
367 COG3386 Gluconolactonase [Carb 98.0 0.006 1.3E-07 50.1 23.0 190 65-264 67-275 (307)
368 KOG2444 WD40 repeat protein [G 97.9 1.3E-05 2.8E-10 60.3 4.5 149 168-325 32-184 (238)
369 PF08553 VID27: VID27 cytoplas 97.9 0.00097 2.1E-08 61.0 16.7 141 124-273 493-646 (794)
370 PF00780 CNH: CNH domain; Int 97.9 0.0078 1.7E-07 49.1 24.1 221 73-321 5-258 (275)
371 PF14583 Pectate_lyase22: Olig 97.9 0.0067 1.4E-07 50.6 19.2 230 66-309 38-303 (386)
372 smart00320 WD40 WD40 repeats. 97.9 6.8E-05 1.5E-09 39.9 5.4 36 56-91 5-40 (40)
373 COG3490 Uncharacterized protei 97.8 0.0093 2E-07 47.0 19.2 189 69-272 119-346 (366)
374 smart00320 WD40 WD40 repeats. 97.8 0.00011 2.4E-09 39.0 5.6 38 235-272 3-40 (40)
375 KOG2395 Protein involved in va 97.8 0.00062 1.3E-08 57.9 12.0 149 164-318 343-500 (644)
376 PF07995 GSDH: Glucose / Sorbo 97.8 0.018 3.9E-07 48.3 21.9 238 65-313 3-330 (331)
377 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0028 6.1E-08 42.5 12.6 100 66-179 2-109 (111)
378 PF05096 Glu_cyclase_2: Glutam 97.7 0.015 3.3E-07 45.9 22.1 185 113-308 45-250 (264)
379 PRK10115 protease 2; Provision 97.7 0.044 9.6E-07 50.8 25.3 199 114-320 128-346 (686)
380 TIGR03074 PQQ_membr_DH membran 97.7 0.035 7.6E-07 51.6 22.7 206 75-281 194-484 (764)
381 PF14655 RAB3GAP2_N: Rab3 GTPa 97.7 0.03 6.4E-07 47.9 26.9 95 68-163 6-117 (415)
382 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.0076 1.6E-07 40.5 14.0 100 157-269 2-109 (111)
383 COG3204 Uncharacterized protei 97.6 0.013 2.9E-07 46.5 16.3 162 151-317 82-262 (316)
384 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.036 7.8E-07 49.6 21.4 200 75-279 69-338 (527)
385 KOG2079 Vacuolar assembly/sort 97.6 0.0028 6E-08 58.6 14.3 102 74-183 98-202 (1206)
386 PF15390 DUF4613: Domain of un 97.6 0.012 2.5E-07 51.3 17.1 154 64-233 20-187 (671)
387 KOG2395 Protein involved in va 97.5 0.0021 4.5E-08 54.8 11.8 144 123-274 344-500 (644)
388 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.5 0.077 1.7E-06 47.5 26.5 237 75-321 120-493 (527)
389 PF10647 Gmad1: Lipoprotein Lp 97.4 0.051 1.1E-06 43.6 18.5 148 114-266 25-187 (253)
390 PF10647 Gmad1: Lipoprotein Lp 97.3 0.05 1.1E-06 43.6 17.3 147 156-311 25-188 (253)
391 PF12894 Apc4_WD40: Anaphase-p 97.3 0.00097 2.1E-08 37.3 4.7 34 112-146 11-44 (47)
392 KOG2079 Vacuolar assembly/sort 97.2 0.0018 4E-08 59.7 8.5 101 165-272 98-201 (1206)
393 KOG4441 Proteins containing BT 97.1 0.18 4E-06 45.6 20.0 235 19-277 285-549 (571)
394 KOG4441 Proteins containing BT 97.1 0.17 3.6E-06 45.9 19.7 226 74-317 284-540 (571)
395 PRK10115 protease 2; Provision 97.1 0.24 5.2E-06 46.1 28.1 195 66-276 129-348 (686)
396 KOG2444 WD40 repeat protein [G 97.1 0.0021 4.6E-08 48.8 6.5 105 75-185 70-178 (238)
397 PHA02713 hypothetical protein; 97.1 0.17 3.7E-06 45.8 19.7 181 123-317 303-532 (557)
398 PF12894 Apc4_WD40: Anaphase-p 97.1 0.002 4.3E-08 36.1 4.8 32 288-319 11-42 (47)
399 KOG3630 Nuclear pore complex, 97.1 0.02 4.4E-07 53.6 13.6 147 156-307 102-262 (1405)
400 KOG4499 Ca2+-binding protein R 97.0 0.096 2.1E-06 40.3 19.3 145 156-309 110-276 (310)
401 PHA02713 hypothetical protein; 97.0 0.046 9.9E-07 49.4 15.5 189 74-279 303-538 (557)
402 KOG3630 Nuclear pore complex, 97.0 0.016 3.4E-07 54.3 12.2 148 64-212 101-258 (1405)
403 COG3204 Uncharacterized protei 97.0 0.13 2.8E-06 41.1 19.5 163 61-233 83-264 (316)
404 PF14870 PSII_BNR: Photosynthe 97.0 0.15 3.3E-06 41.7 29.3 230 66-315 64-301 (302)
405 TIGR03118 PEPCTERM_chp_1 conse 97.0 0.14 3.1E-06 41.2 24.5 226 65-298 24-307 (336)
406 KOG1916 Nuclear protein, conta 96.9 0.0018 3.8E-08 58.8 5.6 254 59-321 128-426 (1283)
407 PF10214 Rrn6: RNA polymerase 96.9 0.39 8.5E-06 45.4 23.6 173 1-185 76-277 (765)
408 COG4257 Vgb Streptogramin lyas 96.8 0.19 4E-06 39.8 17.2 190 113-318 62-262 (353)
409 PRK13684 Ycf48-like protein; P 96.8 0.26 5.7E-06 41.4 30.0 153 154-316 172-329 (334)
410 PF12234 Rav1p_C: RAVE protein 96.7 0.11 2.4E-06 46.8 15.2 114 200-320 32-158 (631)
411 PHA03098 kelch-like protein; P 96.7 0.31 6.8E-06 44.1 18.6 184 122-318 293-511 (534)
412 PRK13684 Ycf48-like protein; P 96.7 0.3 6.5E-06 41.1 20.2 150 112-272 172-329 (334)
413 PF15390 DUF4613: Domain of un 96.6 0.18 3.8E-06 44.4 15.0 121 62-184 55-186 (671)
414 PF12234 Rav1p_C: RAVE protein 96.6 0.11 2.4E-06 46.9 14.2 120 56-183 22-155 (631)
415 PF05096 Glu_cyclase_2: Glutam 96.6 0.29 6.2E-06 39.0 21.1 183 66-264 47-250 (264)
416 KOG4499 Ca2+-binding protein R 96.5 0.24 5.1E-06 38.3 13.4 144 112-262 108-272 (310)
417 KOG1897 Damage-specific DNA bi 96.5 0.72 1.6E-05 43.3 31.7 290 5-316 354-657 (1096)
418 PF14655 RAB3GAP2_N: Rab3 GTPa 96.5 0.076 1.6E-06 45.5 11.8 88 155-242 308-408 (415)
419 COG3823 Glutamine cyclotransfe 96.4 0.29 6.3E-06 37.1 12.9 174 123-306 55-247 (262)
420 PF14870 PSII_BNR: Photosynthe 96.3 0.47 1E-05 39.0 26.2 232 63-309 16-253 (302)
421 TIGR02604 Piru_Ver_Nterm putat 96.3 0.58 1.3E-05 40.0 23.5 138 64-211 14-197 (367)
422 KOG2280 Vacuolar assembly/sort 96.3 0.58 1.3E-05 42.5 16.5 199 85-299 64-270 (829)
423 PF00780 CNH: CNH domain; Int 96.3 0.48 1E-05 38.6 24.5 201 64-283 36-264 (275)
424 PF05694 SBP56: 56kDa selenium 96.2 0.65 1.4E-05 39.7 23.4 228 19-263 87-392 (461)
425 TIGR02604 Piru_Ver_Nterm putat 96.2 0.45 9.7E-06 40.7 15.4 145 113-264 14-203 (367)
426 PHA03098 kelch-like protein; P 96.1 1 2.2E-05 40.8 18.5 188 74-278 294-515 (534)
427 PF08728 CRT10: CRT10; InterP 96.0 0.21 4.6E-06 45.6 12.6 118 66-183 103-245 (717)
428 PLN00033 photosystem II stabil 96.0 0.92 2E-05 39.0 17.4 145 115-271 241-396 (398)
429 TIGR03074 PQQ_membr_DH membran 96.0 1.5 3.2E-05 41.3 21.9 190 124-321 194-480 (764)
430 PF07995 GSDH: Glucose / Sorbo 96.0 0.83 1.8E-05 38.4 21.7 71 199-269 254-330 (331)
431 PF10395 Utp8: Utp8 family; I 95.9 1.3 2.8E-05 40.3 20.7 164 111-283 128-314 (670)
432 KOG2377 Uncharacterized conser 95.5 1.4 2.9E-05 37.9 18.2 120 62-186 65-187 (657)
433 COG5167 VID27 Protein involved 95.5 0.49 1.1E-05 41.0 12.3 150 163-319 476-633 (776)
434 PF10214 Rrn6: RNA polymerase 95.4 2.5 5.3E-05 40.2 20.5 166 61-233 77-277 (765)
435 PF07569 Hira: TUP1-like enhan 95.4 0.14 3.1E-06 40.0 8.5 67 252-319 18-96 (219)
436 COG1520 FOG: WD40-like repeat 95.3 1.6 3.5E-05 37.4 21.4 194 77-283 70-277 (370)
437 PF07569 Hira: TUP1-like enhan 95.2 0.19 4.2E-06 39.2 8.6 65 120-185 18-96 (219)
438 PF10313 DUF2415: Uncharacteri 95.2 0.097 2.1E-06 28.4 4.8 31 245-275 1-34 (43)
439 TIGR03606 non_repeat_PQQ dehyd 95.1 1.8 4E-05 37.8 14.9 114 61-174 27-165 (454)
440 COG5167 VID27 Protein involved 95.1 1.7 3.6E-05 38.0 14.0 141 74-232 478-632 (776)
441 COG5276 Uncharacterized conser 95.0 1.5 3.3E-05 35.3 20.8 196 113-322 87-289 (370)
442 PF14727 PHTB1_N: PTHB1 N-term 95.0 2.2 4.7E-05 37.0 30.7 278 19-320 37-362 (418)
443 PF10313 DUF2415: Uncharacteri 94.9 0.17 3.7E-06 27.5 5.2 30 156-185 2-34 (43)
444 KOG2377 Uncharacterized conser 94.8 0.76 1.6E-05 39.3 11.3 141 158-307 26-172 (657)
445 PLN00033 photosystem II stabil 94.7 2.6 5.7E-05 36.4 31.4 147 157-315 241-396 (398)
446 PF10168 Nup88: Nuclear pore c 94.6 4 8.6E-05 38.2 21.7 81 64-145 85-182 (717)
447 PF12768 Rax2: Cortical protei 94.5 2 4.3E-05 35.0 12.9 118 134-252 16-144 (281)
448 KOG2247 WD40 repeat-containing 94.5 0.0063 1.4E-07 51.6 -1.2 144 157-310 37-180 (615)
449 KOG2247 WD40 repeat-containing 94.5 0.0054 1.2E-07 52.0 -1.6 137 64-210 35-172 (615)
450 PF13449 Phytase-like: Esteras 94.4 2.7 5.9E-05 35.3 15.5 66 65-131 86-165 (326)
451 PF08728 CRT10: CRT10; InterP 94.3 4 8.7E-05 37.8 15.4 156 75-231 49-245 (717)
452 PF14781 BBS2_N: Ciliary BBSom 94.2 1.3 2.9E-05 31.1 12.2 118 68-188 3-129 (136)
453 TIGR03118 PEPCTERM_chp_1 conse 94.2 2.6 5.7E-05 34.3 20.4 203 114-319 24-280 (336)
454 PF13449 Phytase-like: Esteras 94.1 3.1 6.8E-05 34.9 21.0 148 63-211 19-228 (326)
455 PHA02790 Kelch-like protein; P 93.9 4.6 9.9E-05 36.1 17.8 184 74-277 271-473 (480)
456 KOG2280 Vacuolar assembly/sort 93.8 3.7 8E-05 37.7 13.9 174 133-321 63-249 (829)
457 KOG1916 Nuclear protein, conta 93.5 0.07 1.5E-06 49.1 3.2 150 175-333 110-282 (1283)
458 KOG4460 Nuclear pore complex, 93.5 3.7 8.1E-05 36.0 13.0 26 200-230 106-131 (741)
459 PF12657 TFIIIC_delta: Transcr 93.4 1.5 3.2E-05 32.9 9.8 30 156-185 87-122 (173)
460 TIGR03606 non_repeat_PQQ dehyd 93.2 5.4 0.00012 35.0 18.3 111 155-265 30-166 (454)
461 PF12657 TFIIIC_delta: Transcr 93.1 1 2.3E-05 33.7 8.6 31 245-275 86-122 (173)
462 COG4590 ABC-type uncharacteriz 92.8 0.78 1.7E-05 39.2 8.0 166 61-236 218-390 (733)
463 KOG3616 Selective LIM binding 92.7 5.7 0.00012 36.7 13.4 68 63-140 14-81 (1636)
464 PHA02790 Kelch-like protein; P 92.6 7.2 0.00016 34.9 18.3 172 123-309 271-456 (480)
465 COG5290 IkappaB kinase complex 92.4 7.4 0.00016 36.2 13.8 91 158-255 250-347 (1243)
466 PF11715 Nup160: Nucleoporin N 92.1 1.2 2.7E-05 40.4 9.3 72 122-193 156-257 (547)
467 KOG1898 Splicing factor 3b, su 92.1 12 0.00026 36.1 26.4 92 224-318 912-1004(1205)
468 TIGR02276 beta_rpt_yvtn 40-res 92.0 0.84 1.8E-05 24.5 5.2 31 254-284 1-32 (42)
469 COG4590 ABC-type uncharacteriz 91.9 1.1 2.4E-05 38.4 7.8 161 152-322 218-390 (733)
470 PF14761 HPS3_N: Hermansky-Pud 91.9 4.7 0.0001 31.1 13.2 112 66-186 20-165 (215)
471 PF07676 PD40: WD40-like Beta 91.4 1.1 2.4E-05 23.7 5.1 29 243-271 7-38 (39)
472 PF10168 Nup88: Nuclear pore c 91.1 14 0.0003 34.9 22.6 74 113-187 85-182 (717)
473 COG4257 Vgb Streptogramin lyas 90.9 7.2 0.00016 31.4 19.3 198 64-277 62-265 (353)
474 PF10395 Utp8: Utp8 family; I 90.8 13 0.00029 34.2 23.3 163 154-321 129-308 (670)
475 PF11715 Nup160: Nucleoporin N 90.8 1.6 3.5E-05 39.7 8.7 76 73-148 156-254 (547)
476 KOG1900 Nuclear pore complex, 90.8 4 8.6E-05 40.0 11.0 136 132-275 97-273 (1311)
477 KOG1898 Splicing factor 3b, su 90.6 17 0.00037 35.1 18.6 174 135-321 854-1049(1205)
478 KOG2109 WD40 repeat protein [G 90.0 3.7 8E-05 37.1 9.5 82 237-318 485-576 (788)
479 TIGR03548 mutarot_permut cycli 90.0 10 0.00023 31.7 22.0 64 123-187 72-150 (323)
480 PF03022 MRJP: Major royal jel 89.8 10 0.00022 31.2 15.8 143 177-320 35-217 (287)
481 PF03088 Str_synth: Strictosid 89.8 4 8.6E-05 26.6 8.0 53 262-318 33-85 (89)
482 PLN02193 nitrile-specifier pro 89.8 14 0.00031 32.9 23.7 148 123-279 228-415 (470)
483 PF11635 Med16: Mediator compl 89.5 20 0.00043 34.2 20.4 69 245-313 260-345 (753)
484 PF14781 BBS2_N: Ciliary BBSom 89.5 5.8 0.00013 28.0 11.9 114 159-279 3-130 (136)
485 COG1520 FOG: WD40-like repeat 89.4 13 0.00028 31.9 14.9 107 168-281 70-178 (370)
486 TIGR02276 beta_rpt_yvtn 40-res 89.3 2.2 4.7E-05 22.8 6.1 40 164-205 1-41 (42)
487 KOG4460 Nuclear pore complex, 89.2 12 0.00025 33.2 11.6 76 114-189 105-203 (741)
488 KOG1900 Nuclear pore complex, 89.2 4.7 0.0001 39.6 10.1 143 32-185 96-273 (1311)
489 PF07676 PD40: WD40-like Beta 88.2 2.5 5.4E-05 22.2 5.3 29 62-90 7-38 (39)
490 TIGR03547 muta_rot_YjhT mutatr 87.9 16 0.00034 31.0 19.7 41 267-309 291-331 (346)
491 PF11725 AvrE: Pathogenicity f 87.8 36 0.00077 35.0 15.9 58 35-94 460-517 (1774)
492 PF10433 MMS1_N: Mono-function 87.3 22 0.00047 32.1 18.3 186 5-207 300-503 (504)
493 PF05935 Arylsulfotrans: Aryls 87.1 22 0.00048 31.8 16.2 145 133-282 127-309 (477)
494 PF07250 Glyoxal_oxid_N: Glyox 87.0 14 0.0003 29.5 12.3 141 136-283 48-206 (243)
495 COG3292 Predicted periplasmic 86.9 23 0.0005 31.9 14.3 235 63-314 164-401 (671)
496 PRK13613 lipoprotein LpqB; Pro 86.9 26 0.00055 32.4 19.3 191 114-312 364-576 (599)
497 PF14761 HPS3_N: Hermansky-Pud 86.8 13 0.00027 28.8 17.6 142 168-317 30-213 (215)
498 PF02333 Phytase: Phytase; In 86.4 20 0.00043 30.7 21.9 193 122-321 66-293 (381)
499 PLN02153 epithiospecifier prot 85.8 20 0.00044 30.3 22.4 65 123-187 85-170 (341)
500 KOG1983 Tomosyn and related SN 85.7 39 0.00085 33.4 15.7 33 64-96 36-68 (993)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-51 Score=316.90 Aligned_cols=306 Identities=17% Similarity=0.182 Sum_probs=260.5
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
.++|.|++|+| ++..+|+|++ |.++++|+.+ +..+.++.++|..-|.|++|+|||+.||+|+.
T Consensus 115 ~e~Vl~~~fsp---~g~~l~tGsG------D~TvR~WD~~--------TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~ 177 (480)
T KOG0271|consen 115 GEAVLSVQFSP---TGSRLVTGSG------DTTVRLWDLD--------TETPLFTCKGHKNWVLCVAWSPDGKKIASGSK 177 (480)
T ss_pred CCcEEEEEecC---CCceEEecCC------CceEEeeccC--------CCCcceeecCCccEEEEEEECCCcchhhcccc
Confidence 58999999999 5567888885 4459999998 55566789999999999999999999999999
Q ss_pred CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-----CCCeEEEccCCCcEEEEeCCCCceeeccccCcccee
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-----DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL 158 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~ 158 (340)
||.|++||..++++...... .|...|.+++|.| ..++|++++.||.|+|||+..+.++..+.+|..+|+
T Consensus 178 dg~I~lwdpktg~~~g~~l~------gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VT 251 (480)
T KOG0271|consen 178 DGSIRLWDPKTGQQIGRALR------GHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVT 251 (480)
T ss_pred CCeEEEecCCCCCccccccc------CcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceE
Confidence 99999999998876554433 4889999999977 567999999999999999999999999999999999
Q ss_pred EEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEc-----------cCCCcceE-------------
Q 019482 159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS-----------KDGTKPFL------------- 214 (340)
Q Consensus 159 ~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~~~~~~------------- 214 (340)
|+.|--+| +|++|+.|++|++|+...|.+...+.+| ...|+.++.+ |.+.+.--
T Consensus 252 CvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGH-ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~ 329 (480)
T KOG0271|consen 252 CVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGH-AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYE 329 (480)
T ss_pred EEEEcCCc-eEEecCCCceEEEEEccchhHHHhhccc-chheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHH
Confidence 99998655 8999999999999999999998888754 4578888776 22222000
Q ss_pred -------EEEEecCCcceEEEEECCCC-cEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccc
Q 019482 215 -------FCTVQRGDKALLAVYDISTW-NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH 286 (340)
Q Consensus 215 -------~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 286 (340)
-.++++++|.++.+|+.... +++..+.+|..-|+.+.||||++++|+++.|..|++||-++|+.+..+ .+|
T Consensus 330 ~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf-RGH 408 (480)
T KOG0271|consen 330 AVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF-RGH 408 (480)
T ss_pred HhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh-hhc
Confidence 01689999999999997654 478888999999999999999999999999999999999999999877 578
Q ss_pred cccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482 287 LGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV 339 (340)
Q Consensus 287 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v 339 (340)
-.+|..++|+.|.++|++||.|.++++|++...+ ...-..+|.+.|.+|
T Consensus 409 -v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK---l~~DLpGh~DEVf~v 457 (480)
T KOG0271|consen 409 -VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK---LKQDLPGHADEVFAV 457 (480)
T ss_pred -cceeEEEEeccCccEEEEcCCCceEEEEEeeeee---ecccCCCCCceEEEE
Confidence 4799999999999999999999999999997655 233345588777654
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.4e-50 Score=317.21 Aligned_cols=282 Identities=15% Similarity=0.205 Sum_probs=258.4
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCC--CCeEEE
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVC 80 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~ 80 (340)
+..||..+.|+. +...+|+|+ -++.+++|+.+ ......+|.+|.+.|.++.|+|. +..+|+
T Consensus 174 d~rPis~~~fS~---ds~~laT~s------wsG~~kvW~~~--------~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat 236 (459)
T KOG0272|consen 174 DTRPISGCSFSR---DSKHLATGS------WSGLVKVWSVP--------QCNLLQTLRGHTSRVGAAVFHPVDSDLNLAT 236 (459)
T ss_pred CCCcceeeEeec---CCCeEEEee------cCCceeEeecC--------CcceeEEEeccccceeeEEEccCCCccceee
Confidence 467999999999 445778776 56669999987 55566889999999999999996 569999
Q ss_pred EecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEE
Q 019482 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (340)
Q Consensus 81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~ 160 (340)
|+.||++++|++.+......+.. |...|..++|+|+|++|++++.|.+-++||++++..+....+|...|.++
T Consensus 237 ~s~Dgtvklw~~~~e~~l~~l~g-------H~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~i 309 (459)
T KOG0272|consen 237 ASADGTVKLWKLSQETPLQDLEG-------HLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSI 309 (459)
T ss_pred eccCCceeeeccCCCcchhhhhc-------chhhheeeeecCCCceeeecccccchhhcccccchhhHhhccccccccee
Confidence 99999999999998776655543 77899999999999999999999999999999999998888999999999
Q ss_pred EecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee
Q 019482 161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (340)
Q Consensus 161 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 240 (340)
+|+|||..+++|+.|..-+|||++++.++..+.+ |..+|.+++|+|+|-. +++++.|++++|||++..+.+..+
T Consensus 310 af~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g-H~k~I~~V~fsPNGy~-----lATgs~Dnt~kVWDLR~r~~ly~i 383 (459)
T KOG0272|consen 310 AFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG-HIKEILSVAFSPNGYH-----LATGSSDNTCKVWDLRMRSELYTI 383 (459)
T ss_pred EecCCCceeeccCccchhheeecccCcEEEEecc-cccceeeEeECCCceE-----EeecCCCCcEEEeeecccccceec
Confidence 9999999999999999999999999999999987 5568999999999987 899999999999999999999999
Q ss_pred eccCCCeeEEEECC-CCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482 241 RLLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK 316 (340)
Q Consensus 241 ~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~ 316 (340)
..|..-|+.+.|+| .|.+|++++.|++++||..++.++++.+ .+| .+.|.++..++|++++++++.|.++++|.
T Consensus 384 pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL-aGH-e~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 384 PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL-AGH-EGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh-cCC-ccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999999 7899999999999999999999999887 578 68999999999999999999999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-46 Score=291.62 Aligned_cols=281 Identities=16% Similarity=0.203 Sum_probs=244.0
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC-----CCCeE
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-----SGDDF 78 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~l 78 (340)
..-|.|++|+| ++..+|+|. .+|.|.+|+-.... ..-..|.+|...|++++|.| ..++|
T Consensus 157 ~~WVlcvawsP---Dgk~iASG~------~dg~I~lwdpktg~-------~~g~~l~gH~K~It~Lawep~hl~p~~r~l 220 (480)
T KOG0271|consen 157 KNWVLCVAWSP---DGKKIASGS------KDGSIRLWDPKTGQ-------QIGRALRGHKKWITALAWEPLHLVPPCRRL 220 (480)
T ss_pred ccEEEEEEECC---Ccchhhccc------cCCeEEEecCCCCC-------cccccccCcccceeEEeecccccCCCccce
Confidence 46689999999 556788777 55669999754222 12345889999999999976 56799
Q ss_pred EEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCcccee
Q 019482 79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL 158 (340)
Q Consensus 79 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~ 158 (340)
|+++.||.++|||+..+.+...+.. |..+|+|+.|--+| +|++|+.|++|++|+...|.....+.+|...|+
T Consensus 221 as~skDg~vrIWd~~~~~~~~~lsg-------HT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN 292 (480)
T KOG0271|consen 221 ASSSKDGSVRIWDTKLGTCVRTLSG-------HTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVN 292 (480)
T ss_pred ecccCCCCEEEEEccCceEEEEecc-------CccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchhee
Confidence 9999999999999998887766654 88999999998766 999999999999999999999999999988888
Q ss_pred EEEec-----------CCC-------------------------CeEEEeeCCCeEEEEEccCCe-eEEEeecCCCCcee
Q 019482 159 DMDFS-----------LDS-------------------------EFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIE 201 (340)
Q Consensus 159 ~~~~~-----------~~~-------------------------~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~~v~ 201 (340)
.++.+ |.+ ..|++|+.|.++.+|+....+ ++..+.+ |...|+
T Consensus 293 ~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg-Hq~lVn 371 (480)
T KOG0271|consen 293 HLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG-HQALVN 371 (480)
T ss_pred eeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc-hhhhee
Confidence 88776 323 349999999999999976544 6666654 456799
Q ss_pred eEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeec
Q 019482 202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW 281 (340)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 281 (340)
.+.||||+++ +++++.|..|++||.++|+.+..+++|-..|..++|+.|.++|++|+.|.++++||+++.+...-
T Consensus 372 ~V~fSPd~r~-----IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~D 446 (480)
T KOG0271|consen 372 HVSFSPDGRY-----IASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQD 446 (480)
T ss_pred eEEECCCccE-----EEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeeccc
Confidence 9999999998 89999999999999999999999999999999999999999999999999999999999988877
Q ss_pred ccccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482 282 SKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK 316 (340)
Q Consensus 282 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~ 316 (340)
+ .+| .+.|.++.|+|||..+++|+.|..+++|.
T Consensus 447 L-pGh-~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 447 L-PGH-ADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred C-CCC-CceEEEEEecCCCceeecCCCceEEEeec
Confidence 6 467 67999999999999999999999999995
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.4e-46 Score=292.68 Aligned_cols=261 Identities=19% Similarity=0.163 Sum_probs=238.5
Q ss_pred cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC--CCeEEEccCCCcEEE
Q 019482 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRI 138 (340)
Q Consensus 61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~ 138 (340)
+-+.+|..+.|+++++.|++|+.+|.+++|+..+......+.. |...|.++.|+|. +..+++|+.||++++
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~g-------H~~~v~~~~fhP~~~~~~lat~s~Dgtvkl 245 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRG-------HTSRVGAAVFHPVDSDLNLATASADGTVKL 245 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEec-------cccceeeEEEccCCCccceeeeccCCceee
Confidence 4567899999999999999999999999999998876666654 8899999999996 668999999999999
Q ss_pred EeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEE
Q 019482 139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218 (340)
Q Consensus 139 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 218 (340)
|++.+...+..+.+|...|..++|+|+|++|+|++.|.+-++||+++++.+....+ |...|.+++|.|||.. ++
T Consensus 246 w~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEG-Hs~~v~~iaf~~DGSL-----~~ 319 (459)
T KOG0272|consen 246 WKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEG-HSKGVFSIAFQPDGSL-----AA 319 (459)
T ss_pred eccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcc-cccccceeEecCCCce-----ee
Confidence 99999899999999999999999999999999999999999999999888776664 5567999999999997 79
Q ss_pred ecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEec
Q 019482 219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298 (340)
Q Consensus 219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~ 298 (340)
+++.|..-+|||+++++++..+.+|..+|.+++|+|+|..||+|+.|++++|||++..+.+..+ .+| .+-|+.+.|+|
T Consensus 320 tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i-pAH-~nlVS~Vk~~p 397 (459)
T KOG0272|consen 320 TGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI-PAH-SNLVSQVKYSP 397 (459)
T ss_pred ccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec-ccc-cchhhheEecc
Confidence 9999999999999999999999999999999999999999999999999999999998887776 467 67999999999
Q ss_pred -CCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482 299 -TQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV 339 (340)
Q Consensus 299 -~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v 339 (340)
.|.+|+|++.|++++||.- ..|.+.+...+|.+.|-++
T Consensus 398 ~~g~fL~TasyD~t~kiWs~---~~~~~~ksLaGHe~kV~s~ 436 (459)
T KOG0272|consen 398 QEGYFLVTASYDNTVKIWST---RTWSPLKSLAGHEGKVISL 436 (459)
T ss_pred cCCeEEEEcccCcceeeecC---CCcccchhhcCCccceEEE
Confidence 7899999999999999986 4666788899999988665
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-43 Score=264.69 Aligned_cols=290 Identities=10% Similarity=0.135 Sum_probs=240.7
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
+++.|+.++-.+... .+++.++ .|..+.+|++..+... .....+.++||...|..+..++||++.++++
T Consensus 14 h~d~Vt~la~~~~~~--~~l~sas------rDk~ii~W~L~~dd~~---~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s 82 (315)
T KOG0279|consen 14 HTDWVTALAIKIKNS--DILVSAS------RDKTIIVWKLTSDDIK---YGVPVRRLTGHSHFVSDVVLSSDGNFALSAS 82 (315)
T ss_pred CCceEEEEEeecCCC--ceEEEcc------cceEEEEEEeccCccc---cCceeeeeeccceEecceEEccCCceEEecc
Confidence 357889999888633 5566555 5566999999876332 4556778999999999999999999999999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccC-ccceeEEE
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA-HKSVLDMD 161 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~i~~~~ 161 (340)
.|+++++||+.+++...++.. |...|.+++|++|.+.|++|+.|.+|++|++............ .+.|.|+.
T Consensus 83 wD~~lrlWDl~~g~~t~~f~G-------H~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvr 155 (315)
T KOG0279|consen 83 WDGTLRLWDLATGESTRRFVG-------HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVR 155 (315)
T ss_pred ccceEEEEEecCCcEEEEEEe-------cCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEE
Confidence 999999999999987777654 8899999999999999999999999999998765444333332 56899999
Q ss_pred ecCC--CCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee
Q 019482 162 FSLD--SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (340)
Q Consensus 162 ~~~~--~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~ 239 (340)
|+|+ ..+|++++.|++|++||+++-+....+.+ +.+.++.+++||||.. .++++.|+.+.+||++.++.+..
T Consensus 156 fsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~g-h~~~v~t~~vSpDGsl-----casGgkdg~~~LwdL~~~k~lys 229 (315)
T KOG0279|consen 156 FSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIG-HSGYVNTVTVSPDGSL-----CASGGKDGEAMLWDLNEGKNLYS 229 (315)
T ss_pred EcCCCCCcEEEEccCCceEEEEccCCcchhhcccc-ccccEEEEEECCCCCE-----EecCCCCceEEEEEccCCceeEe
Confidence 9997 67999999999999999998888777765 5578999999999997 78999999999999999998655
Q ss_pred eeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccc-------ccceeeEEEecCCeEEEEEecCCcE
Q 019482 240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL-------GTSIALVEFCPTQRVVLTASKEWGA 312 (340)
Q Consensus 240 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~dg~i 312 (340)
+ .+...|.+++|+|+.-.|+.+. +..|+|||+.++.++..+..... .-...+++|++||+.|++|-.|+.|
T Consensus 230 l-~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~i 307 (315)
T KOG0279|consen 230 L-EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVI 307 (315)
T ss_pred c-cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcE
Confidence 4 4566899999999977776665 45699999999887765532221 1246789999999999999999999
Q ss_pred EEEEec
Q 019482 313 MITKLT 318 (340)
Q Consensus 313 ~iw~~~ 318 (340)
++|.+.
T Consensus 308 rv~qv~ 313 (315)
T KOG0279|consen 308 RVWQVA 313 (315)
T ss_pred EEEEee
Confidence 999985
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3e-43 Score=264.04 Aligned_cols=287 Identities=17% Similarity=0.169 Sum_probs=243.1
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
+.++|+|+.|+++. +.++++ +.|+.+.+|+.- +......++-....|..++|+|.|+++|+|+
T Consensus 54 H~~Ki~~~~ws~Ds---r~ivSa------SqDGklIvWDs~--------TtnK~haipl~s~WVMtCA~sPSg~~VAcGG 116 (343)
T KOG0286|consen 54 HLNKIYAMDWSTDS---RRIVSA------SQDGKLIVWDSF--------TTNKVHAIPLPSSWVMTCAYSPSGNFVACGG 116 (343)
T ss_pred cccceeeeEecCCc---CeEEee------ccCCeEEEEEcc--------cccceeEEecCceeEEEEEECCCCCeEEecC
Confidence 35799999999953 455544 477889999875 2222333444567899999999999999999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 162 (340)
-|....||++.+.+..... ........|.+.+.|..|-+|+ .|++++.|.+..+||+++++.+..+.+|.+.|.++.+
T Consensus 117 LdN~Csiy~ls~~d~~g~~-~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl 194 (343)
T KOG0286|consen 117 LDNKCSIYPLSTRDAEGNV-RVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSL 194 (343)
T ss_pred cCceeEEEecccccccccc-eeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEec
Confidence 9999999999855211110 0011123588999999998855 7899999999999999999999999999999999999
Q ss_pred cC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee
Q 019482 163 SL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (340)
Q Consensus 163 ~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 241 (340)
+| +++.+++|+-|+..++||++.+.+++.+.++ +..|+++.|.|+|.. ++++++|++.++||+|..+.+..+.
T Consensus 195 ~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh-esDINsv~ffP~G~a-----fatGSDD~tcRlyDlRaD~~~a~ys 268 (343)
T KOG0286|consen 195 SPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH-ESDINSVRFFPSGDA-----FATGSDDATCRLYDLRADQELAVYS 268 (343)
T ss_pred CCCCCCeEEecccccceeeeeccCcceeEeeccc-ccccceEEEccCCCe-----eeecCCCceeEEEeecCCcEEeeec
Confidence 99 9999999999999999999999999999865 467999999999987 8999999999999999988876665
Q ss_pred cc--CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482 242 LL--RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK 316 (340)
Q Consensus 242 ~~--~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~ 316 (340)
.. ..+|++++||..|++|++|..|..+.+||.-.++....+ .+| ++.|.++..+|||..+++||.|..++||.
T Consensus 269 ~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L-~GH-eNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 269 HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL-AGH-ENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEe-ecc-CCeeEEEEECCCCcEEEecchhHheeecC
Confidence 33 368999999999999999999999999999988888776 477 68999999999999999999999999994
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-43 Score=260.34 Aligned_cols=285 Identities=14% Similarity=0.167 Sum_probs=240.9
Q ss_pred cEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeee
Q 019482 20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI 99 (340)
Q Consensus 20 ~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~ 99 (340)
.+||+.+ .|.+|++|... +..+..+++..++.|+.+...|+++.||+++... |++||+.+++...
T Consensus 11 viLvsA~------YDhTIRfWqa~--------tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~S~np~P 75 (311)
T KOG0315|consen 11 VILVSAG------YDHTIRFWQAL--------TGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLNSNNPNP 75 (311)
T ss_pred eEEEecc------Ccceeeeeehh--------cCeEEEEEecCccceeeEEEcCCcchhhhccCCe-eEEEEccCCCCCc
Confidence 4566444 67779999988 8888889998889999999999999999988766 9999999876521
Q ss_pred eeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEE
Q 019482 100 NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSAR 179 (340)
Q Consensus 100 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~ 179 (340)
... ...|...|..+.|..+|+++++|++||+++|||++...+. +...+..+|+++..+|+...|++|..+|.|+
T Consensus 76 v~t-----~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q-R~~~~~spVn~vvlhpnQteLis~dqsg~ir 149 (311)
T KOG0315|consen 76 VAT-----FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ-RNYQHNSPVNTVVLHPNQTELISGDQSGNIR 149 (311)
T ss_pred eeE-----EeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc-hhccCCCCcceEEecCCcceEEeecCCCcEE
Confidence 111 1137789999999999999999999999999999985544 4556778999999999999999999999999
Q ss_pred EEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc------EEeeeeccCCCeeEEEEC
Q 019482 180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN------KIGHKRLLRKPASVLSIS 253 (340)
Q Consensus 180 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~i~~~~~s 253 (340)
+||+.+..+...+.......+.++...|||+. ++.+...|..++|++-+.+ ++..++.|.+.+..+.+|
T Consensus 150 vWDl~~~~c~~~liPe~~~~i~sl~v~~dgsm-----l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lS 224 (311)
T KOG0315|consen 150 VWDLGENSCTHELIPEDDTSIQSLTVMPDGSM-----LAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLS 224 (311)
T ss_pred EEEccCCccccccCCCCCcceeeEEEcCCCcE-----EEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEEC
Confidence 99999988888887777789999999999998 7888889999999987643 566778889999999999
Q ss_pred CCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccc
Q 019482 254 LDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHS 333 (340)
Q Consensus 254 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~ 333 (340)
||+++|++++.|.+++||+.++.-.......+| +..++.++||.||+||++|+.|+.+++|++...+. .....+|.
T Consensus 225 Pd~k~lat~ssdktv~iwn~~~~~kle~~l~gh-~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~---v~qy~gh~ 300 (311)
T KOG0315|consen 225 PDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH-QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKE---VRQYQGHH 300 (311)
T ss_pred CCCcEEEeecCCceEEEEecCCceeeEEEeecC-CceEEeeeeccCccEEEecCCCCceeecccccCce---eeecCCcc
Confidence 999999999999999999999873333333566 57999999999999999999999999999976653 44555554
Q ss_pred c
Q 019482 334 H 334 (340)
Q Consensus 334 ~ 334 (340)
.
T Consensus 301 K 301 (311)
T KOG0315|consen 301 K 301 (311)
T ss_pred c
Confidence 3
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=9.6e-43 Score=280.53 Aligned_cols=274 Identities=21% Similarity=0.267 Sum_probs=226.6
Q ss_pred eeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC
Q 019482 54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD 133 (340)
Q Consensus 54 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 133 (340)
.....+..|..-|+++.|+|||.++|+++.||++.+||-.+++....+.. ...|.+.|.+++|+||++.+++++.|
T Consensus 181 KFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~----~~aHkGsIfalsWsPDs~~~~T~SaD 256 (603)
T KOG0318|consen 181 KFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED----SDAHKGSIFALSWSPDSTQFLTVSAD 256 (603)
T ss_pred eeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC----CCCccccEEEEEECCCCceEEEecCC
Confidence 34556778999999999999999999999999999999999988777654 23599999999999999999999999
Q ss_pred CcEEEEeCCCCceee-------------------------------------------ccccCccceeEEEecCCCCeEE
Q 019482 134 GHLRIMHWPSLRIIL-------------------------------------------DEPKAHKSVLDMDFSLDSEFLA 170 (340)
Q Consensus 134 g~i~~~d~~~~~~~~-------------------------------------------~~~~~~~~i~~~~~~~~~~~l~ 170 (340)
.+++|||+.+.+.+. .+.+|...|+++..+|++++|+
T Consensus 257 kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~ 336 (603)
T KOG0318|consen 257 KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY 336 (603)
T ss_pred ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEE
Confidence 999999997654332 2456778999999999999999
Q ss_pred EeeCCCeEEEEEccCCeeEE-----------EeecC--------------------------------------------
Q 019482 171 TTSTDGSARIWKTEDGVAWT-----------FLTRN-------------------------------------------- 195 (340)
Q Consensus 171 ~~~~d~~v~iwd~~~~~~~~-----------~~~~~-------------------------------------------- 195 (340)
+|+.||.|.-|+..++..-+ .+...
T Consensus 337 SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d 416 (603)
T KOG0318|consen 337 SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSD 416 (603)
T ss_pred eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCC
Confidence 99999999999986542210 00000
Q ss_pred -------------------------CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc--EEeeeeccCCCee
Q 019482 196 -------------------------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRKPAS 248 (340)
Q Consensus 196 -------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~ 248 (340)
..-...+++++|++.. ++.++.|+.+++|.+.... .......|.++++
T Consensus 417 ~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~-----vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT 491 (603)
T KOG0318|consen 417 GGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSE-----VAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAIT 491 (603)
T ss_pred CCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCE-----EEEecccceEEEEEecCCcccceeeeecccCCce
Confidence 0011335667777776 6889999999999998755 3345677889999
Q ss_pred EEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCcc
Q 019482 249 VLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSL 328 (340)
Q Consensus 249 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 328 (340)
++++|||+.|||++...+.+.+||..+.+........| ...|.+++|+|++.++|+||-|..|.||+++.|.+. ...
T Consensus 492 ~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FH-takI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~--i~i 568 (603)
T KOG0318|consen 492 DVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFH-TAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH--III 568 (603)
T ss_pred EEEECCCCcEEEEeccCCcEEEEEcccCceecceeeee-eeeEEEEEeCCCceEEEeccccceEEEEEccChhhh--eEe
Confidence 99999999999999999999999999988854444446 689999999999999999999999999999999864 788
Q ss_pred ccccccccccC
Q 019482 329 PLLHSHSQNSV 339 (340)
Q Consensus 329 ~~~h~~~v~~v 339 (340)
...|..+|++|
T Consensus 569 knAH~~gVn~v 579 (603)
T KOG0318|consen 569 KNAHLGGVNSV 579 (603)
T ss_pred ccccccCceeE
Confidence 89999999876
No 9
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.4e-45 Score=285.34 Aligned_cols=287 Identities=17% Similarity=0.210 Sum_probs=251.1
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 84 (340)
-+|..+.|.|+ ++-|++|+ ..+.+.+|+.. ....+..++.|+.+|+++.|+++|.++++|+.+
T Consensus 97 c~V~~v~WtPe---GRRLltgs------~SGEFtLWNg~--------~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~g 159 (464)
T KOG0284|consen 97 CPVNVVRWTPE---GRRLLTGS------QSGEFTLWNGT--------SFNFETILQAHDSPVRTMKWSHNGTWMISGDKG 159 (464)
T ss_pred cceeeEEEcCC---CceeEeec------ccccEEEecCc--------eeeHHHHhhhhcccceeEEEccCCCEEEEcCCC
Confidence 47899999994 33344444 55669999875 444556688999999999999999999999999
Q ss_pred CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecC
Q 019482 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL 164 (340)
Q Consensus 85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 164 (340)
|.|++|+..-..... +.. .|...|++++|+|+...|++++.||+|+|||....+....+.+|.-.|.+++|+|
T Consensus 160 G~iKyWqpnmnnVk~-~~a------hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP 232 (464)
T KOG0284|consen 160 GMIKYWQPNMNNVKI-IQA------HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP 232 (464)
T ss_pred ceEEecccchhhhHH-hhH------hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC
Confidence 999999987554322 111 1458999999999999999999999999999988877777788888999999999
Q ss_pred CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC
Q 019482 165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244 (340)
Q Consensus 165 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 244 (340)
...++++++.|..|++||.++++++.++.. |...|..+.|+|++++ +++++.|..++++|+++.+.+..+++|+
T Consensus 233 ~kgLiasgskDnlVKlWDprSg~cl~tlh~-HKntVl~~~f~~n~N~-----Llt~skD~~~kv~DiR~mkEl~~~r~Hk 306 (464)
T KOG0284|consen 233 TKGLIASGSKDNLVKLWDPRSGSCLATLHG-HKNTVLAVKFNPNGNW-----LLTGSKDQSCKVFDIRTMKELFTYRGHK 306 (464)
T ss_pred ccceeEEccCCceeEeecCCCcchhhhhhh-ccceEEEEEEcCCCCe-----eEEccCCceEEEEehhHhHHHHHhhcch
Confidence 999999999999999999999999999975 4568999999999987 8999999999999999999999999999
Q ss_pred CCeeEEEECC-CCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482 245 KPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD 322 (340)
Q Consensus 245 ~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (340)
..++++.|+| ...+|.+|+.||.|..|.+...+++..+..+| ...|++++|+|-|.+|++|+.|.++++|.-..|.+
T Consensus 307 kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AH-d~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~d 384 (464)
T KOG0284|consen 307 KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAH-DGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPGD 384 (464)
T ss_pred hhheeeccccccccceeeccCCCceEEEeccccccccCCCccc-ccceeeeeccccceeEeecCCCcceeeeccCCCCC
Confidence 9999999999 56788999999999999999888888888888 68999999999999999999999999999887765
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.7e-42 Score=259.90 Aligned_cols=268 Identities=13% Similarity=0.144 Sum_probs=236.3
Q ss_pred eeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC
Q 019482 55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (340)
Q Consensus 55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 134 (340)
.+.+|+||.+.|+++.|++|.++|++++.||.+.|||..+......+.. ....|...+|+|.|+++|+|+-|+
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-------~s~WVMtCA~sPSg~~VAcGGLdN 119 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-------PSSWVMTCAYSPSGNFVACGGLDN 119 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec-------CceeEEEEEECCCCCeEEecCcCc
Confidence 4578999999999999999999999999999999999988766554432 346899999999999999999999
Q ss_pred cEEEEeCCCC------ceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEcc-
Q 019482 135 HLRIMHWPSL------RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK- 207 (340)
Q Consensus 135 ~i~~~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~- 207 (340)
...||++.+. .....+.+|.+.+.++.|-+| ..|+|++.|.++.+||+++++.+..+.+ |.+.|.+++++|
T Consensus 120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~G-H~gDV~slsl~p~ 197 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHG-HTGDVMSLSLSPS 197 (343)
T ss_pred eeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecC-CcccEEEEecCCC
Confidence 9999999854 234557788889999999875 4689999999999999999999999985 456899999999
Q ss_pred CCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccc
Q 019482 208 DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL 287 (340)
Q Consensus 208 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 287 (340)
+++. +++++-|...++||+|.+..++.+.+|+..|+++.|.|+|.-+++|++|+..++||++..+.+..+.....
T Consensus 198 ~~nt-----FvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~ 272 (343)
T KOG0286|consen 198 DGNT-----FVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSI 272 (343)
T ss_pred CCCe-----EEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcc
Confidence 7765 79999999999999999999999999999999999999999999999999999999999888877765555
Q ss_pred ccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482 288 GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV 339 (340)
Q Consensus 288 ~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v 339 (340)
..+|++++||..|++|++|..|.++.+||.-... ......+|.+.|.+|
T Consensus 273 ~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e---~vg~L~GHeNRvScl 321 (343)
T KOG0286|consen 273 ICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE---RVGVLAGHENRVSCL 321 (343)
T ss_pred cCCceeEEEcccccEEEeeecCCceeEeeccccc---eEEEeeccCCeeEEE
Confidence 6789999999999999999999999999985444 456677899988765
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2e-41 Score=252.57 Aligned_cols=259 Identities=17% Similarity=0.175 Sum_probs=220.6
Q ss_pred CeeeEEEecCCCCeeEEEEcCCC-CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc
Q 019482 53 PLVTYVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131 (340)
Q Consensus 53 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 131 (340)
....-++++|++.|..++..+.+ +.++++++|..+.+|++.......-... .....|...|..+..++||++.++++
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~--r~~~GHsH~v~dv~~s~dg~~alS~s 82 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPV--RRLTGHSHFVSDVVLSSDGNFALSAS 82 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCcee--eeeeccceEecceEEccCCceEEecc
Confidence 34556789999999999999874 5788999999999999976532211111 11123778999999999999999999
Q ss_pred CCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCC-CCceeeEEEccCCC
Q 019482 132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGT 210 (340)
Q Consensus 132 ~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~ 210 (340)
.|+++++||+.+++..+.+.+|...|.+++|+||++.+++|+.|.+|++|+.. +.+..++.... .+.|.++.|+|+..
T Consensus 83 wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~ 161 (315)
T KOG0279|consen 83 WDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNES 161 (315)
T ss_pred ccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCC
Confidence 99999999999999999999999999999999999999999999999999986 45555555444 78999999999964
Q ss_pred cceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccc
Q 019482 211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS 290 (340)
Q Consensus 211 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 290 (340)
.++ +++++.|+++++||+++.+....+.+|.+.++.+++||||..+++|+.||.+.+||++.++.++.+. + ...
T Consensus 162 ~p~---Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~--a-~~~ 235 (315)
T KOG0279|consen 162 NPI---IVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE--A-FDI 235 (315)
T ss_pred CcE---EEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc--C-CCe
Confidence 433 7999999999999999999999999999999999999999999999999999999999999987654 3 579
Q ss_pred eeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 291 IALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 291 i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
|.+++|+|+...|+.+. +..|+||+++...
T Consensus 236 v~sl~fspnrywL~~at-~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 236 VNSLCFSPNRYWLCAAT-ATSIKIWDLESKA 265 (315)
T ss_pred EeeEEecCCceeEeecc-CCceEEEeccchh
Confidence 99999999876666654 4569999998654
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1e-41 Score=271.07 Aligned_cols=296 Identities=18% Similarity=0.204 Sum_probs=245.9
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeee--EEEec----CCCCeeEEEEcCCCC
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVT--YVFDE----SEGDPMTIAVNPSGD 76 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~--~~~~~----h~~~v~~~~~~~~~~ 76 (340)
+..+|++++|+|... .++++|++..+ .++|++..+.........++ ..+.+ ....|++++|+.+|.
T Consensus 177 ~~~~V~~~~WnP~~~--~llasg~~~s~------ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~ 248 (524)
T KOG0273|consen 177 HESEVFICAWNPLRD--GLLASGSGDST------ARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT 248 (524)
T ss_pred CCCceEEEecCchhh--hhhhccCCccc------eeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC
Confidence 467899999999543 47787776554 88888864222221111111 11111 235799999999999
Q ss_pred eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccc
Q 019482 77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS 156 (340)
Q Consensus 77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 156 (340)
.||+|+.||.+++|+..... ...+. .|.++|.++.|+.+|.||++++.|+++.+||..+++..+.+.-|..+
T Consensus 249 ~LatG~~~G~~riw~~~G~l-~~tl~-------~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~ 320 (524)
T KOG0273|consen 249 LLATGSEDGEARIWNKDGNL-ISTLG-------QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP 320 (524)
T ss_pred eEEEeecCcEEEEEecCchh-hhhhh-------ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC
Confidence 99999999999999986543 22222 38899999999999999999999999999999999988888777777
Q ss_pred eeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE
Q 019482 157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (340)
Q Consensus 157 i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 236 (340)
..++.|-.+ ..+++++.|+.|+++.+....++.++.+ |.+.|.++.|.|.+.. ++++++|++++||.......
T Consensus 321 ~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg~L-----LaS~SdD~TlkiWs~~~~~~ 393 (524)
T KOG0273|consen 321 ALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTGSL-----LASCSDDGTLKIWSMGQSNS 393 (524)
T ss_pred ccceEEecC-ceEeecCCCceEEEEEecCCCcceeeec-ccCceEEEEECCCCce-----EEEecCCCeeEeeecCCCcc
Confidence 678999754 4688999999999999999999999997 5578999999999997 89999999999999999888
Q ss_pred EeeeeccCCCeeEEEECCCC---------CEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEe
Q 019482 237 IGHKRLLRKPASVLSISLDG---------KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS 307 (340)
Q Consensus 237 ~~~~~~~~~~i~~~~~s~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 307 (340)
...+..|...|..+.|+|.| ..+++++.|+.|++||+..+.++..+. .| ..+|.+++|+|+|+++|+|+
T Consensus 394 ~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~-kH-~~pVysvafS~~g~ylAsGs 471 (524)
T KOG0273|consen 394 VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM-KH-QEPVYSVAFSPNGRYLASGS 471 (524)
T ss_pred hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec-cC-CCceEEEEecCCCcEEEecC
Confidence 88999999999999999964 468999999999999999999999874 45 68999999999999999999
Q ss_pred cCCcEEEEEecCCCCC
Q 019482 308 KEWGAMITKLTVPADW 323 (340)
Q Consensus 308 ~dg~i~iw~~~~~~~~ 323 (340)
.||.|.+|+.+..+.+
T Consensus 472 ~dg~V~iws~~~~~l~ 487 (524)
T KOG0273|consen 472 LDGCVHIWSTKTGKLV 487 (524)
T ss_pred CCCeeEeccccchhee
Confidence 9999999999876643
No 13
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.9e-42 Score=288.98 Aligned_cols=260 Identities=18% Similarity=0.264 Sum_probs=230.0
Q ss_pred eeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCcee--------eeee-----------c-----cccCCCCC
Q 019482 55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT--------DINL-----------L-----AKKMPPLQ 110 (340)
Q Consensus 55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~--------~~~~-----------~-----~~~~~~~~ 110 (340)
+.+++..-...++|..|++|+..||.|-.|..|++|.+...+. .... . ........
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 4445555566799999999999999999999999999984220 0000 0 00011245
Q ss_pred CCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEE
Q 019482 111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT 190 (340)
Q Consensus 111 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~ 190 (340)
|.++|....|+|+.++|+++++|+++++|.+.+..++..+.+|..+|.++.|+|.|-+|||++.|++-++|.....++++
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlR 529 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLR 529 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999988988
Q ss_pred EeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEE
Q 019482 191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV 270 (340)
Q Consensus 191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 270 (340)
.+.++. ..+.|+.|+|+..+ +++++.|.++++||+.+|..++.+.+|.++|.+++|||+|++|++|+.||.|++
T Consensus 530 ifaghl-sDV~cv~FHPNs~Y-----~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~i 603 (707)
T KOG0263|consen 530 IFAGHL-SDVDCVSFHPNSNY-----VATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKI 603 (707)
T ss_pred hhcccc-cccceEEECCcccc-----cccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEE
Confidence 887655 57999999999998 899999999999999999999999999999999999999999999999999999
Q ss_pred EeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482 271 VDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD 322 (340)
Q Consensus 271 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (340)
||+.+++.+..+ .+| .+.|.++.|+.||..||+||.|+.|++||+.....
T Consensus 604 WDl~~~~~v~~l-~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 604 WDLANGSLVKQL-KGH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred EEcCCCcchhhh-hcc-cCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence 999999998877 467 68999999999999999999999999999986653
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.4e-41 Score=267.01 Aligned_cols=285 Identities=17% Similarity=0.242 Sum_probs=247.3
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
...|+|++|+. ++.+||+|. .++.++||+.+ ..+..+|..|.++|.++.|+..|+||++++.
T Consensus 235 nkdVT~L~Wn~---~G~~LatG~------~~G~~riw~~~---------G~l~~tl~~HkgPI~slKWnk~G~yilS~~v 296 (524)
T KOG0273|consen 235 NKDVTSLDWNN---DGTLLATGS------EDGEARIWNKD---------GNLISTLGQHKGPIFSLKWNKKGTYILSGGV 296 (524)
T ss_pred cCCcceEEecC---CCCeEEEee------cCcEEEEEecC---------chhhhhhhccCCceEEEEEcCCCCEEEeccC
Confidence 35699999999 667899888 55569999876 2233557789999999999999999999999
Q ss_pred CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEec
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~ 163 (340)
|+++.+||..++.....+.. |..+-..+.|-.+ ..+++.+.|+.|+++.+....++.++.+|+++|.++.|+
T Consensus 297 D~ttilwd~~~g~~~q~f~~-------~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n 368 (524)
T KOG0273|consen 297 DGTTILWDAHTGTVKQQFEF-------HSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN 368 (524)
T ss_pred CccEEEEeccCceEEEeeee-------ccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEEC
Confidence 99999999988887665543 5556678889654 478899999999999999989999999999999999999
Q ss_pred CCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcc----eEEEEEecCCcceEEEEECCCCcEEee
Q 019482 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP----FLFCTVQRGDKALLAVYDISTWNKIGH 239 (340)
Q Consensus 164 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~~d~~i~i~d~~~~~~~~~ 239 (340)
|.+.+|+++|.|++++||+.........+..+. ..|+.+.|+|+|... --..+++++.|+++++||+..+.++..
T Consensus 369 ~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hs-kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~ 447 (524)
T KOG0273|consen 369 PTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHS-KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT 447 (524)
T ss_pred CCCceEEEecCCCeeEeeecCCCcchhhhhhhc-cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe
Confidence 999999999999999999999888888887554 569999999986421 001268889999999999999999999
Q ss_pred eeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 240 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
+..|..+|.+++|+|+|+++|+|+.||.|.+|++++++..+.... ...|..++|+.+|.+|..+-.|+.+++-++.
T Consensus 448 f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~---~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 448 LMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG---TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC---CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999999999999999999999999999999887643 4579999999999999999999999998875
No 15
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.2e-41 Score=286.73 Aligned_cols=250 Identities=18% Similarity=0.265 Sum_probs=222.3
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCC-------CCcc----------------cCCeeeEEEec
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKT-------TSVY----------------TSPLVTYVFDE 61 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~-------~~~~----------------~~~~~~~~~~~ 61 (340)
.-++|+.|++ +..++|.|- .+..|++|.+.+.. ..+. .+.....++-|
T Consensus 379 ~~v~ca~fSd---dssmlA~Gf------~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 379 QGVTCAEFSD---DSSMLACGF------VDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred CcceeEeecC---Ccchhhccc------cccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 3478999998 445777666 45569999998532 0000 12334556999
Q ss_pred CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC
Q 019482 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (340)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~ 141 (340)
|.++|..+.|+|+.++|++++.|+++++|.+.+........+ |..||.++.|+|.|-|||+++.|++.++|..
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~G-------H~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKG-------HLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeecccceeEEEecC-------CCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 999999999999999999999999999999999888776654 8899999999999999999999999999999
Q ss_pred CCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecC
Q 019482 142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG 221 (340)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 221 (340)
....+.+.+.+|-..|.|+.|+|+.+++++||.|.+|++||+.+|..++.+.+ |.++|.+++|||+|++ +++++
T Consensus 523 d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G-H~~~V~al~~Sp~Gr~-----LaSg~ 596 (707)
T KOG0263|consen 523 DHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG-HKGPVTALAFSPCGRY-----LASGD 596 (707)
T ss_pred ccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC-CCCceEEEEEcCCCce-----Eeecc
Confidence 98888888999999999999999999999999999999999999999999976 5679999999999998 89999
Q ss_pred CcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCc
Q 019482 222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM 276 (340)
Q Consensus 222 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 276 (340)
.|+.|.+||+.+++.+..+.+|.+.|.++.|+.+|..||+|+.|++|++||+...
T Consensus 597 ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 597 EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999999999999999999999999999999999999999999999998653
No 16
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-40 Score=256.34 Aligned_cols=286 Identities=15% Similarity=0.158 Sum_probs=248.2
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 84 (340)
.+|+.+-|.| ...++++.+ .+.+|++|++. +......++||.+.|..++|+..|+++++++.|
T Consensus 109 ~~vt~v~~hp---~~~~v~~as------~d~tikv~D~~--------tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsD 171 (406)
T KOG0295|consen 109 SSVTRVIFHP---SEALVVSAS------EDATIKVFDTE--------TGELERSLRGHTDSVFDISFDASGKYLATCSSD 171 (406)
T ss_pred cceeeeeecc---CceEEEEec------CCceEEEEEcc--------chhhhhhhhccccceeEEEEecCccEEEecCCc
Confidence 4677777777 334555443 56779999987 555577899999999999999999999999999
Q ss_pred CCEEEEEecCc-eeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEec
Q 019482 85 GGCKLFEVYGG-ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (340)
Q Consensus 85 ~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~ 163 (340)
=.+++||.++. ++.... ..|...|.++.|-|.|.+|++++.|.+|+.|++.++.++..+.+|.+.|..++.+
T Consensus 172 l~~~LWd~~~~~~c~ks~-------~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~ 244 (406)
T KOG0295|consen 172 LSAKLWDFDTFFRCIKSL-------IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVN 244 (406)
T ss_pred cchhheeHHHHHHHHHHh-------cCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEec
Confidence 88999999763 222222 2477899999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE----------EEEEecCCcceEEEEECCC
Q 019482 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL----------FCTVQRGDKALLAVYDIST 233 (340)
Q Consensus 164 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----------~~~~~~~~d~~i~i~d~~~ 233 (340)
.||.++++++.|.+|++|-+.++++...+.. |+.++.+++|.|...+.-+ -.+.+++.|++|++||+.+
T Consensus 245 ~DGti~As~s~dqtl~vW~~~t~~~k~~lR~-hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t 323 (406)
T KOG0295|consen 245 QDGTIIASCSNDQTLRVWVVATKQCKAELRE-HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST 323 (406)
T ss_pred CCeeEEEecCCCceEEEEEeccchhhhhhhc-cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC
Confidence 9999999999999999999999988877764 4568999999875432111 1268889999999999999
Q ss_pred CcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEE
Q 019482 234 WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAM 313 (340)
Q Consensus 234 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 313 (340)
+.++.++.+|...|..++|+|.|+||+++.+|+++++||+++++++..+. .| ..-++++.|+.+-.++++|+-|..++
T Consensus 324 g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~-ah-~hfvt~lDfh~~~p~VvTGsVdqt~K 401 (406)
T KOG0295|consen 324 GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE-AH-EHFVTSLDFHKTAPYVVTGSVDQTVK 401 (406)
T ss_pred CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC-CC-cceeEEEecCCCCceEEeccccceee
Confidence 99999999999999999999999999999999999999999999998886 66 56899999999999999999999999
Q ss_pred EEEe
Q 019482 314 ITKL 317 (340)
Q Consensus 314 iw~~ 317 (340)
+|..
T Consensus 402 vwEc 405 (406)
T KOG0295|consen 402 VWEC 405 (406)
T ss_pred eeec
Confidence 9974
No 17
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.5e-39 Score=269.72 Aligned_cols=295 Identities=15% Similarity=0.213 Sum_probs=248.4
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
..+|..++|+. .+..+|.|+.. -+.+-+|++. ........++|...+++++++|||+++|+|+.
T Consensus 307 ~~~I~t~~~N~---tGDWiA~g~~k-----lgQLlVweWq--------sEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e 370 (893)
T KOG0291|consen 307 DQKILTVSFNS---TGDWIAFGCSK-----LGQLLVWEWQ--------SESYVLKQQGHSDRITSLAYSPDGQLIATGAE 370 (893)
T ss_pred cceeeEEEecc---cCCEEEEcCCc-----cceEEEEEee--------ccceeeeccccccceeeEEECCCCcEEEeccC
Confidence 47888999998 56789988753 4579999998 44455667899999999999999999999999
Q ss_pred CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCcc-ceeEEEe
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDF 162 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~i~~~~~ 162 (340)
||+|+|||..++-+...+.. |...|+.+.|+..++.+++.+-||+|+.||+......+.+..... +..|++.
T Consensus 371 DgKVKvWn~~SgfC~vTFte-------Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscvav 443 (893)
T KOG0291|consen 371 DGKVKVWNTQSGFCFVTFTE-------HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAV 443 (893)
T ss_pred CCcEEEEeccCceEEEEecc-------CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEE
Confidence 99999999999988877753 889999999999999999999999999999998887777765443 6789999
Q ss_pred cCCCCeEEEeeCCC-eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee
Q 019482 163 SLDSEFLATTSTDG-SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (340)
Q Consensus 163 ~~~~~~l~~~~~d~-~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 241 (340)
.|.|..+..|+.|. .|.+|++++|+.+..+.+ |+++|.+++|+|++.. +++++.|.+|++||+-......+..
T Consensus 444 D~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG-HEgPVs~l~f~~~~~~-----LaS~SWDkTVRiW~if~s~~~vEtl 517 (893)
T KOG0291|consen 444 DPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG-HEGPVSGLSFSPDGSL-----LASGSWDKTVRIWDIFSSSGTVETL 517 (893)
T ss_pred cCCCCEEEeeccceEEEEEEEeecCeeeehhcC-CCCcceeeEEccccCe-----EEeccccceEEEEEeeccCceeeeE
Confidence 99999999998875 699999999999988874 6689999999999997 8999999999999987653333344
Q ss_pred ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc------------------ccccccceeeEEEecCCeEE
Q 019482 242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK------------------RLHLGTSIALVEFCPTQRVV 303 (340)
Q Consensus 242 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------------------~~~~~~~i~~~~~~~~~~~l 303 (340)
.....+..++|+|+|+.|++++-||.|.+||.+.+.....+. ....+...+.+++++||..|
T Consensus 518 ~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~I 597 (893)
T KOG0291|consen 518 EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCI 597 (893)
T ss_pred eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEE
Confidence 456689999999999999999999999999998765442221 11124578999999999999
Q ss_pred EEEecCCcEEEEEecCCCCCCCCc
Q 019482 304 LTASKEWGAMITKLTVPADWKGLS 327 (340)
Q Consensus 304 ~~~~~dg~i~iw~~~~~~~~~~~~ 327 (340)
++||....|.+|+++.....+.++
T Consensus 598 lAgG~sn~iCiY~v~~~vllkkfq 621 (893)
T KOG0291|consen 598 LAGGESNSICIYDVPEGVLLKKFQ 621 (893)
T ss_pred EecCCcccEEEEECchhheeeeEE
Confidence 999999999999998765544433
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.9e-39 Score=269.50 Aligned_cols=286 Identities=19% Similarity=0.233 Sum_probs=248.7
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
+.+|+|++|++ ..+++|.|-. .+.+.+|.+. ...+.+.+.-...+|..++|+..|+.||.|+.
T Consensus 265 ~~kvtaa~fH~---~t~~lvvgFs------sG~f~LyelP--------~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~ 327 (893)
T KOG0291|consen 265 SSKVTAAAFHK---GTNLLVVGFS------SGEFGLYELP--------DFNLIHSLSISDQKILTVSFNSTGDWIAFGCS 327 (893)
T ss_pred ccceeeeeccC---CceEEEEEec------CCeeEEEecC--------CceEEEEeecccceeeEEEecccCCEEEEcCC
Confidence 47899999999 5567887764 4448899887 66677778777889999999999999999876
Q ss_pred C-CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482 84 N-GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (340)
Q Consensus 84 d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 162 (340)
. |++.||+..+...+.+.. .|...+.+++++|||+++++|+.||.|++||...+-+..++..|...|+.+.|
T Consensus 328 klgQLlVweWqsEsYVlKQQ-------gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f 400 (893)
T KOG0291|consen 328 KLGQLLVWEWQSESYVLKQQ-------GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQF 400 (893)
T ss_pred ccceEEEEEeeccceeeecc-------ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEE
Confidence 6 899999998877665543 37889999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCc-ceEEEEECCCCcEEeeee
Q 019482 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-ALLAVYDISTWNKIGHKR 241 (340)
Q Consensus 163 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d-~~i~i~d~~~~~~~~~~~ 241 (340)
+..|+.+++.+-||+|+.||+......+++.........+++..|.|.. +.+++.| -.|.+|++.+|+.+..+.
T Consensus 401 ~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGel-----V~AG~~d~F~IfvWS~qTGqllDiLs 475 (893)
T KOG0291|consen 401 TARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGEL-----VCAGAQDSFEIFVWSVQTGQLLDILS 475 (893)
T ss_pred EecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCE-----EEeeccceEEEEEEEeecCeeeehhc
Confidence 9999999999999999999999999999998777777889999999985 3444444 579999999999999999
Q ss_pred ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce-EeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482 242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME-INHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 242 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
+|+++|.+++|+|++..|++++.|.+|++||+-... ....+.. ...+..++|+|||+.|+++..||.|.+|+.+..
T Consensus 476 GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i---~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~ 552 (893)
T KOG0291|consen 476 GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI---RSDVLAVSFRPDGKELAVATLDGQITFFDIKEA 552 (893)
T ss_pred CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee---ccceeEEEEcCCCCeEEEEEecceEEEEEhhhc
Confidence 999999999999999999999999999999986542 2222222 357999999999999999999999999998754
Q ss_pred C
Q 019482 321 A 321 (340)
Q Consensus 321 ~ 321 (340)
.
T Consensus 553 ~ 553 (893)
T KOG0291|consen 553 V 553 (893)
T ss_pred e
Confidence 3
No 19
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.9e-41 Score=262.76 Aligned_cols=261 Identities=15% Similarity=0.198 Sum_probs=226.2
Q ss_pred CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC
Q 019482 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (340)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~ 141 (340)
-+-.|..+.|.|+|+.|++|+..|.+.+|+.........+ ..|..+|+++.|++++.++++|+.+|.|++|+.
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtil-------QaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqp 167 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETIL-------QAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQP 167 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHh-------hhhcccceeEEEccCCCEEEEcCCCceEEeccc
Confidence 3457999999999999999999999999998544332222 138899999999999999999999999999996
Q ss_pred CCCceeeccccCc-cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEec
Q 019482 142 PSLRIILDEPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR 220 (340)
Q Consensus 142 ~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 220 (340)
.- ..+..+..|+ ..|++++|+|+...|++++.||+|+|||....+....+.+ |.-.|.+++|+|.-.. ++++
T Consensus 168 nm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~G-HgwdVksvdWHP~kgL-----iasg 240 (464)
T KOG0284|consen 168 NM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRG-HGWDVKSVDWHPTKGL-----IASG 240 (464)
T ss_pred ch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheecc-CCCCcceeccCCccce-----eEEc
Confidence 54 4455566666 6999999999888999999999999999999888888864 4567999999999876 8999
Q ss_pred CCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecC-
Q 019482 221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT- 299 (340)
Q Consensus 221 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~- 299 (340)
+.|..|++||.++++++..+..|+..|..+.|+|++++|++++.|..+++||+++.+.+..+ .+| ...++++.|+|-
T Consensus 241 skDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~-r~H-kkdv~~~~WhP~~ 318 (464)
T KOG0284|consen 241 SKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY-RGH-KKDVTSLTWHPLN 318 (464)
T ss_pred cCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh-hcc-hhhheeecccccc
Confidence 99999999999999999999999999999999999999999999999999999987777666 467 579999999994
Q ss_pred CeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccCC
Q 019482 300 QRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSVS 340 (340)
Q Consensus 300 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~vs 340 (340)
..+|.+|+.||.|..|.+.... +....+..|...|.+++
T Consensus 319 ~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AHd~~iwsl~ 357 (464)
T KOG0284|consen 319 ESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAHDGEIWSLA 357 (464)
T ss_pred ccceeeccCCCceEEEeccccc--cccCCCcccccceeeee
Confidence 4788999999999999997443 34567888999888874
No 20
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.9e-38 Score=258.17 Aligned_cols=283 Identities=20% Similarity=0.314 Sum_probs=242.0
Q ss_pred CCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEE
Q 019482 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81 (340)
Q Consensus 2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 81 (340)
.+..+|++++|+|+ ..++++|+ .++.+.+|+++.. .....+..|...+..+.|+|++++++++
T Consensus 7 ~h~~~i~~~~~~~~---~~~l~~~~------~~g~i~i~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 69 (289)
T cd00200 7 GHTGGVTCVAFSPD---GKLLATGS------GDGTIKVWDLETG--------ELLRTLKGHTGPVRDVAASADGTYLASG 69 (289)
T ss_pred ccCCCEEEEEEcCC---CCEEEEee------cCcEEEEEEeeCC--------CcEEEEecCCcceeEEEECCCCCEEEEE
Confidence 35689999999995 35666555 4667999998733 2345677899999999999999999999
Q ss_pred ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEE
Q 019482 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (340)
Q Consensus 82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~ 161 (340)
+.++.+++|++.+.+....+. .|...+.++.|+++++++++++.++.|.+||+.+++....+..+...+.++.
T Consensus 70 ~~~~~i~i~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~ 142 (289)
T cd00200 70 SSDKTIRLWDLETGECVRTLT-------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA 142 (289)
T ss_pred cCCCeEEEEEcCcccceEEEe-------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEE
Confidence 999999999998765444433 2567899999999988999888899999999998888877777778899999
Q ss_pred ecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee
Q 019482 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (340)
Q Consensus 162 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 241 (340)
|+|++.++++++.|+.+++||+++++.+..+.. +...+.++.|+|+++. +++++.++.+++||++.++.+..+.
T Consensus 143 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~-----l~~~~~~~~i~i~d~~~~~~~~~~~ 216 (289)
T cd00200 143 FSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG-HTGEVNSVAFSPDGEK-----LLSSSSDGTIKLWDLSTGKCLGTLR 216 (289)
T ss_pred EcCcCCEEEEEcCCCcEEEEEccccccceeEec-CccccceEEECCCcCE-----EEEecCCCcEEEEECCCCceecchh
Confidence 999998898888899999999998888877764 4457999999999976 6777779999999999988888887
Q ss_pred ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482 242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK 316 (340)
Q Consensus 242 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~ 316 (340)
.+...+.++.|+|++.++++++.||.|++||+.+++....+. .| ...+.+++|+|++++|++++.||.+++|+
T Consensus 217 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 217 GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS-GH-TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc-cc-CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 888899999999999899988889999999999888877764 55 56899999999999999999999999995
No 21
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.5e-39 Score=276.66 Aligned_cols=287 Identities=18% Similarity=0.276 Sum_probs=244.1
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
...|+|+.|+++ +..++.+. .++.+.+|....... .....+.+|...|.+++|+|+++++++++.
T Consensus 159 ~~sv~~~~fs~~---g~~l~~~~------~~~~i~~~~~~~~~~------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~ 223 (456)
T KOG0266|consen 159 CPSVTCVDFSPD---GRALAAAS------SDGLIRIWKLEGIKS------NLLRELSGHTRGVSDVAFSPDGSYLLSGSD 223 (456)
T ss_pred cCceEEEEEcCC---CCeEEEcc------CCCcEEEeecccccc------hhhccccccccceeeeEECCCCcEEEEecC
Confidence 467899999994 44566555 566699998842221 233455889999999999999999999999
Q ss_pred CCCEEEEEecC-ceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482 84 NGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (340)
Q Consensus 84 d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 162 (340)
|++|+|||+.. +.....+. .|...|++++|+|+++++++|+.|++|++||++++++...+..|.+.|++++|
T Consensus 224 D~tiriwd~~~~~~~~~~l~-------gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f 296 (456)
T KOG0266|consen 224 DKTLRIWDLKDDGRNLKTLK-------GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAF 296 (456)
T ss_pred CceEEEeeccCCCeEEEEec-------CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEE
Confidence 99999999944 35555554 38899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEeeCCCeEEEEEccCCe--eEEEeecCCCC-ceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee
Q 019482 163 SLDSEFLATTSTDGSARIWKTEDGV--AWTFLTRNSDE-KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (340)
Q Consensus 163 ~~~~~~l~~~~~d~~v~iwd~~~~~--~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~ 239 (340)
++++++|++++.|+.|++||+.+++ +...+...... ++++++|+|++.+ ++++..|+.+++||++.+..+..
T Consensus 297 ~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~-----ll~~~~d~~~~~w~l~~~~~~~~ 371 (456)
T KOG0266|consen 297 SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY-----LLSASLDRTLKLWDLRSGKSVGT 371 (456)
T ss_pred CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE-----EEEecCCCeEEEEEccCCcceee
Confidence 9999999999999999999999998 55666655544 6999999999998 88999999999999999999888
Q ss_pred eeccCCC---eeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEe--cCCcEEE
Q 019482 240 KRLLRKP---ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS--KEWGAMI 314 (340)
Q Consensus 240 ~~~~~~~---i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i 314 (340)
+..|... +.+...++.++++++|+.|+.|++||+.++..+..+. +|....+..++++|..+++++++ .|+.+++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~ 450 (456)
T KOG0266|consen 372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-GHSKAAVSDLSSHPTENLIASSSFEGDGLIRL 450 (456)
T ss_pred ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-CCCCCceeccccCCCcCeeeecCcCCCceEEE
Confidence 8888764 4445567899999999999999999999988777664 45246889999999999999998 7889999
Q ss_pred EEec
Q 019482 315 TKLT 318 (340)
Q Consensus 315 w~~~ 318 (340)
|..+
T Consensus 451 w~~~ 454 (456)
T KOG0266|consen 451 WKYD 454 (456)
T ss_pred ecCC
Confidence 9864
No 22
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.4e-38 Score=245.72 Aligned_cols=286 Identities=16% Similarity=0.181 Sum_probs=238.6
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
++.+|++++.+| ...++++|++ |..-.+|+.. +.....++.+|++.|+++.|+.+|.+||+|+
T Consensus 63 H~~svFavsl~P---~~~l~aTGGg------DD~AflW~~~--------~ge~~~eltgHKDSVt~~~FshdgtlLATGd 125 (399)
T KOG0296|consen 63 HTDSVFAVSLHP---NNNLVATGGG------DDLAFLWDIS--------TGEFAGELTGHKDSVTCCSFSHDGTLLATGD 125 (399)
T ss_pred cCCceEEEEeCC---CCceEEecCC------CceEEEEEcc--------CCcceeEecCCCCceEEEEEccCceEEEecC
Confidence 578999999999 4468898884 5558999887 4445578999999999999999999999999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 162 (340)
-+|.|+||...++.....+.. ....+.-+.|+|.+..|++|+.||.+.+|.+.++...+.+.+|..++++=.|
T Consensus 126 msG~v~v~~~stg~~~~~~~~-------e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f 198 (399)
T KOG0296|consen 126 MSGKVLVFKVSTGGEQWKLDQ-------EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEF 198 (399)
T ss_pred CCccEEEEEcccCceEEEeec-------ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccc
Confidence 999999999999887666642 3367888999999999999999999999999998778888898899999999
Q ss_pred cCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCc-------------------------------------------
Q 019482 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK------------------------------------------- 199 (340)
Q Consensus 163 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~------------------------------------------- 199 (340)
.|+|+.++++..||+|++||+.+++++..+.......
T Consensus 199 ~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l 278 (399)
T KOG0296|consen 199 IPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPEL 278 (399)
T ss_pred cCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccc
Confidence 9999999999999999999999998887765211111
Q ss_pred -------eeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEe
Q 019482 200 -------IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD 272 (340)
Q Consensus 200 -------v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 272 (340)
+.++.+.|....+ ...+.++-||+|.|||+...+. +..-.|...|..+.|-+ ..+|++++.+|.|+.||
T Consensus 279 ~~~~e~~~esve~~~~ss~l--pL~A~G~vdG~i~iyD~a~~~~-R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 279 KPSQEELDESVESIPSSSKL--PLAACGSVDGTIAIYDLAASTL-RHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD 354 (399)
T ss_pred cccchhhhhhhhhccccccc--chhhcccccceEEEEecccchh-heeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence 1122222222211 1257788999999999998765 44556777899999998 78999999999999999
Q ss_pred ccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 273 VKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
.++|+.+..+ .+| ..+|..++.+|+.++++|+|.|++.+|++++
T Consensus 355 aRtG~l~~~y-~GH-~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 355 ARTGQLKFTY-TGH-QMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ccccceEEEE-ecC-chheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999998876 578 6899999999999999999999999999874
No 23
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.2e-39 Score=245.46 Aligned_cols=268 Identities=19% Similarity=0.189 Sum_probs=226.4
Q ss_pred eeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCcee-eeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC
Q 019482 55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT-DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD 133 (340)
Q Consensus 55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 133 (340)
+...+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++..... ...+. .|.+.|..+.|.+|++.+++++.|
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk-------gHsgAVM~l~~~~d~s~i~S~gtD 111 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLK-------GHSGAVMELHGMRDGSHILSCGTD 111 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeec-------cccceeEeeeeccCCCEEEEecCC
Confidence 3456789999999999999999999999999999999765432 22221 489999999999999999999999
Q ss_pred CcEEEEeCCCCceeeccccCccceeEEEecCCCC-eEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcc
Q 019482 134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP 212 (340)
Q Consensus 134 g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (340)
.+++.||+++++.+.++..|..-++.+.-+.-|. ++.+++.|+++++||+++...++++.. ..+++++.|..++..
T Consensus 112 k~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~--kyqltAv~f~d~s~q- 188 (338)
T KOG0265|consen 112 KTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN--KYQLTAVGFKDTSDQ- 188 (338)
T ss_pred ceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc--ceeEEEEEecccccc-
Confidence 9999999999999999999998888888555444 577888999999999999999888863 346999999999988
Q ss_pred eEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce----Eeeccccccc-
Q 019482 213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME----INHWSKRLHL- 287 (340)
Q Consensus 213 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~- 287 (340)
+.+++-|+.|++||++.......+.+|..+|+.+..+|+|.++.+-+.|..+++||++... ++..+....+
T Consensus 189 ----v~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hn 264 (338)
T KOG0265|consen 189 ----VISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHN 264 (338)
T ss_pred ----eeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhh
Confidence 8999999999999999999999999999999999999999999999999999999997633 2333321111
Q ss_pred -ccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482 288 -GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV 339 (340)
Q Consensus 288 -~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v 339 (340)
+.....++|+|+++.+.+|+.|..+++|+..... .+....+|.+.|+.+
T Consensus 265 feknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~---~lyklpGh~gsvn~~ 314 (338)
T KOG0265|consen 265 FEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRR---ILYKLPGHYGSVNEV 314 (338)
T ss_pred hhhhcceeeccCCCCccccccccceEEEeeccccc---EEEEcCCcceeEEEe
Confidence 1245678999999999999999999999986544 456677788887765
No 24
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7.2e-38 Score=232.76 Aligned_cols=284 Identities=14% Similarity=0.159 Sum_probs=227.4
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEE-ecCCCCeeEEEEcCCCCeEEEEe
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF-DESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
++++..++|+|.. +.++|+++ .++.|++|+... .. +..+...+ .+|+..|++++|+|.|++||+++
T Consensus 14 ~~r~W~~awhp~~--g~ilAscg------~Dk~vriw~~~~-~~----s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS 80 (312)
T KOG0645|consen 14 KDRVWSVAWHPGK--GVILASCG------TDKAVRIWSTSS-GD----SWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS 80 (312)
T ss_pred CCcEEEEEeccCC--ceEEEeec------CCceEEEEecCC-CC----cEEEEEeccccchheeeeeeecCCCcEEEEee
Confidence 5689999999942 46788777 456699999874 21 23333333 47999999999999999999999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC---ceeeccccCccceeE
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL---RIILDEPKAHKSVLD 159 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~i~~ 159 (340)
.|.++.||.-..++....-.. ..|...|.|++|+++|++||++++|+.|-||.+..+ ++...+.+|...|..
T Consensus 81 FD~t~~Iw~k~~~efecv~~l-----EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~ 155 (312)
T KOG0645|consen 81 FDATVVIWKKEDGEFECVATL-----EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKH 155 (312)
T ss_pred ccceEEEeecCCCceeEEeee-----eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccE
Confidence 999999998776544322111 248899999999999999999999999999998744 456667888889999
Q ss_pred EEecCCCCeEEEeeCCCeEEEEEccC---CeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE
Q 019482 160 MDFSLDSEFLATTSTDGSARIWKTED---GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (340)
Q Consensus 160 ~~~~~~~~~l~~~~~d~~v~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 236 (340)
+.|+|...+|++++.|.+|++|+-.. -++..++..++ ..|.+++|++.|.. ++++++|++++||-..+.-
T Consensus 156 V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~-~TVW~~~F~~~G~r-----l~s~sdD~tv~Iw~~~~~~- 228 (312)
T KOG0645|consen 156 VIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHE-NTVWSLAFDNIGSR-----LVSCSDDGTVSIWRLYTDL- 228 (312)
T ss_pred EEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCcc-ceEEEEEecCCCce-----EEEecCCcceEeeeeccCc-
Confidence 99999999999999999999998762 35677777554 58999999999977 8999999999999876321
Q ss_pred EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCc------eEeecccccccccceeeEEEecC-CeEEEEEecC
Q 019482 237 IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM------EINHWSKRLHLGTSIALVEFCPT-QRVVLTASKE 309 (340)
Q Consensus 237 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d 309 (340)
-..|..++..+.|. ...|++++.|+.|++|.-... +.+......| +..|++++|+|. .+.|++|++|
T Consensus 229 ---~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aH-e~dVNsV~w~p~~~~~L~s~~DD 302 (312)
T KOG0645|consen 229 ---SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAH-EVDVNSVQWNPKVSNRLASGGDD 302 (312)
T ss_pred ---chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccc-ccccceEEEcCCCCCceeecCCC
Confidence 23456788889998 558999999999999976542 2222334556 569999999995 6789999999
Q ss_pred CcEEEEEec
Q 019482 310 WGAMITKLT 318 (340)
Q Consensus 310 g~i~iw~~~ 318 (340)
|.+++|.+.
T Consensus 303 G~v~~W~l~ 311 (312)
T KOG0645|consen 303 GIVNFWELE 311 (312)
T ss_pred ceEEEEEec
Confidence 999999975
No 25
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=6.3e-38 Score=236.26 Aligned_cols=282 Identities=16% Similarity=0.181 Sum_probs=237.5
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
++.|+.+.|.| ++.++|+|+ .|..|.+|+...+.+.. ..+++|.++|..+.|.+|++.+++++.
T Consensus 47 ~geI~~~~F~P---~gs~~aSgG------~Dr~I~LWnv~gdceN~-------~~lkgHsgAVM~l~~~~d~s~i~S~gt 110 (338)
T KOG0265|consen 47 KGEIYTIKFHP---DGSCFASGG------SDRAIVLWNVYGDCENF-------WVLKGHSGAVMELHGMRDGSHILSCGT 110 (338)
T ss_pred cceEEEEEECC---CCCeEeecC------CcceEEEEeccccccce-------eeeccccceeEeeeeccCCCEEEEecC
Confidence 68999999999 445777776 66669999976444333 457799999999999999999999999
Q ss_pred CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCC-CeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 162 (340)
|.+++.||.++++...+... |..-|..+.-+.-| .++.+++.|+++++||+++.+.+..+ ...-+++++.|
T Consensus 111 Dk~v~~wD~~tG~~~rk~k~-------h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~-~~kyqltAv~f 182 (338)
T KOG0265|consen 111 DKTVRGWDAETGKRIRKHKG-------HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF-ENKYQLTAVGF 182 (338)
T ss_pred CceEEEEecccceeeehhcc-------ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc-ccceeEEEEEe
Confidence 99999999999998776654 77778887744433 46788999999999999988777655 34558999999
Q ss_pred cCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc----EEe
Q 019482 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN----KIG 238 (340)
Q Consensus 163 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~----~~~ 238 (340)
..++..+.+|+-|+.|++||++.+.....+.++ ..+|+.+..+|+|.. +.+.+.|.++++||++... ++.
T Consensus 183 ~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh-~DtIt~lsls~~gs~-----llsnsMd~tvrvwd~rp~~p~~R~v~ 256 (338)
T KOG0265|consen 183 KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGH-ADTITGLSLSRYGSF-----LLSNSMDNTVRVWDVRPFAPSQRCVK 256 (338)
T ss_pred cccccceeeccccCceeeeccccCcceEEeecc-cCceeeEEeccCCCc-----cccccccceEEEEEecccCCCCceEE
Confidence 999999999999999999999999999999865 468999999999998 7899999999999998543 355
Q ss_pred eeeccC----CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEE
Q 019482 239 HKRLLR----KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI 314 (340)
Q Consensus 239 ~~~~~~----~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 314 (340)
.+.++. ......+|+|+++++.+|+.|..+++||......+..+ .+| ...|+.++|+|...+|.+++.|.+|++
T Consensus 257 if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl-pGh-~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 257 IFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL-PGH-YGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred EeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc-CCc-ceeEEEeeecCCCcEEEEeccCceeEe
Confidence 555543 34567899999999999999999999999988888776 477 579999999999999999999999887
Q ss_pred EEe
Q 019482 315 TKL 317 (340)
Q Consensus 315 w~~ 317 (340)
=.+
T Consensus 335 gei 337 (338)
T KOG0265|consen 335 GEI 337 (338)
T ss_pred ecc
Confidence 443
No 26
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-39 Score=249.57 Aligned_cols=270 Identities=18% Similarity=0.227 Sum_probs=237.9
Q ss_pred CCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc
Q 019482 52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131 (340)
Q Consensus 52 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 131 (340)
.|.....+.+|..+|+.+-|+|+-..++++++|++|++||..+++....+.+ |...+.+++|+..|++|++++
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrG-------Ht~sv~di~~~a~Gk~l~tcS 169 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRG-------HTDSVFDISFDASGKYLATCS 169 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhc-------cccceeEEEEecCccEEEecC
Confidence 3455567888999999999999999999999999999999999987555543 778899999999999999999
Q ss_pred CCCcEEEEeCCC-CceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCC
Q 019482 132 VDGHLRIMHWPS-LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210 (340)
Q Consensus 132 ~dg~i~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (340)
.|-.+++||..+ .+++....+|...|.++.|-|.|.++++++.|.+|+.|++.++.++.++.++. +.+..++.+.||.
T Consensus 170 sDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~-ewvr~v~v~~DGt 248 (406)
T KOG0295|consen 170 SDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHS-EWVRMVRVNQDGT 248 (406)
T ss_pred CccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCch-HhEEEEEecCCee
Confidence 999999999987 45666777788899999999999999999999999999999999999998655 5899999999998
Q ss_pred cceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCC---------------CCEEEEeeCCCcEEEEeccC
Q 019482 211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD---------------GKYLAMGSKDGDICVVDVKK 275 (340)
Q Consensus 211 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~---------------~~~l~~~~~dg~i~i~d~~~ 275 (340)
. +++++.|.++++|-+.++++...++.|+.++.+++|.|. +.++.+++.|+.|++||+.+
T Consensus 249 i-----~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t 323 (406)
T KOG0295|consen 249 I-----IASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST 323 (406)
T ss_pred E-----EEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC
Confidence 7 899999999999999999888899999999999999763 25899999999999999999
Q ss_pred ceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482 276 MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV 339 (340)
Q Consensus 276 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v 339 (340)
+.++..+ .+| .+.|.+++|+|.|+||+++.+|+++++|+++.... .+....|.+-|+++
T Consensus 324 g~cL~tL-~gh-dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~c---mk~~~ah~hfvt~l 382 (406)
T KOG0295|consen 324 GMCLFTL-VGH-DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQC---MKTLEAHEHFVTSL 382 (406)
T ss_pred CeEEEEE-ecc-cceeeeeEEcCCCeEEEEEecCCcEEEEEecccee---eeccCCCcceeEEE
Confidence 9999887 467 68999999999999999999999999999987664 33344666655543
No 27
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.7e-39 Score=259.36 Aligned_cols=282 Identities=17% Similarity=0.226 Sum_probs=241.4
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 84 (340)
--|.++.|.|.. ..|+++|+ .|+.|+||++-.. ..+..++.+|..+|.+++|+++|..+++++.|
T Consensus 215 kgvsai~~fp~~--~hLlLS~g------mD~~vklW~vy~~-------~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD 279 (503)
T KOG0282|consen 215 KGVSAIQWFPKK--GHLLLSGG------MDGLVKLWNVYDD-------RRCLRTFKGHRKPVRDASFNNCGTSFLSASFD 279 (503)
T ss_pred cccchhhhccce--eeEEEecC------CCceEEEEEEecC-------cceehhhhcchhhhhhhhccccCCeeeeeecc
Confidence 458899999953 36777665 6777999998643 34557899999999999999999999999999
Q ss_pred CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCC-CeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEec
Q 019482 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (340)
Q Consensus 85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~ 163 (340)
+.+++||++++++...+.. ...+.|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-
T Consensus 280 ~~lKlwDtETG~~~~~f~~--------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~ 351 (503)
T KOG0282|consen 280 RFLKLWDTETGQVLSRFHL--------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFV 351 (503)
T ss_pred eeeeeeccccceEEEEEec--------CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEc
Confidence 9999999999998877743 3577999999988 789999999999999999999999888888899999999
Q ss_pred CCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc---EEeee
Q 019482 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN---KIGHK 240 (340)
Q Consensus 164 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~---~~~~~ 240 (340)
++|+++++++.|++++||+.+.+-+++...........++..+|+++. ++.-+.|+.|.+|.+...- ....+
T Consensus 352 ~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~-----~~aQs~dN~i~ifs~~~~~r~nkkK~f 426 (503)
T KOG0282|consen 352 DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKW-----FAAQSMDNYIAIFSTVPPFRLNKKKRF 426 (503)
T ss_pred cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCe-----ehhhccCceEEEEecccccccCHhhhh
Confidence 999999999999999999999888877666555566889999999997 7888999999999976432 22345
Q ss_pred eccC--CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCC-eEEEEEecCCcEEEEE
Q 019482 241 RLLR--KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ-RVVLTASKEWGAMITK 316 (340)
Q Consensus 241 ~~~~--~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iw~ 316 (340)
.+|. +.-..+.|||||++|++|+.||.+.+||.++.+.+..+. .| ..++..+.|+|.. ..+|+++.||.|++|+
T Consensus 427 eGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk-ah-~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 427 EGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK-AH-DQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc-cC-CcceEEEEecCCCcceeEecccCceeEecC
Confidence 5554 445678999999999999999999999999999888774 56 6799999999965 6899999999999996
No 28
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1e-37 Score=240.57 Aligned_cols=286 Identities=13% Similarity=0.107 Sum_probs=249.1
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
-+-|.|+++.|. ..++++|+ .|+++.||++. +..+..++.||...|..+++|+--.|+++++.
T Consensus 151 lgWVr~vavdP~---n~wf~tgs------~DrtikIwDla--------tg~LkltltGhi~~vr~vavS~rHpYlFs~ge 213 (460)
T KOG0285|consen 151 LGWVRSVAVDPG---NEWFATGS------ADRTIKIWDLA--------TGQLKLTLTGHIETVRGVAVSKRHPYLFSAGE 213 (460)
T ss_pred cceEEEEeeCCC---ceeEEecC------CCceeEEEEcc--------cCeEEEeecchhheeeeeeecccCceEEEecC
Confidence 367899999994 35788777 45569999998 78888999999999999999999999999999
Q ss_pred CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEec
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~ 163 (340)
|+.|+.||++.++.+..+.. |-..|+|++.+|.-..|++|+.|.++++||+++...+..+.+|..+|..+.+.
T Consensus 214 dk~VKCwDLe~nkvIR~YhG-------HlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~ 286 (460)
T KOG0285|consen 214 DKQVKCWDLEYNKVIRHYHG-------HLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQ 286 (460)
T ss_pred CCeeEEEechhhhhHHHhcc-------ccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEee
Confidence 99999999999888776654 77999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeecc
Q 019482 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL 243 (340)
Q Consensus 164 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 243 (340)
|-...+++||.|++|++||++.++...++. ++...+.+++.+|.... ++++....|+-|++..+..+..+.+|
T Consensus 287 ~~dpqvit~S~D~tvrlWDl~agkt~~tlt-~hkksvral~lhP~e~~------fASas~dnik~w~~p~g~f~~nlsgh 359 (460)
T KOG0285|consen 287 PTDPQVITGSHDSTVRLWDLRAGKTMITLT-HHKKSVRALCLHPKENL------FASASPDNIKQWKLPEGEFLQNLSGH 359 (460)
T ss_pred cCCCceEEecCCceEEEeeeccCceeEeee-cccceeeEEecCCchhh------hhccCCccceeccCCccchhhccccc
Confidence 988889999999999999999999988887 55668999999999874 44445556999999999998889999
Q ss_pred CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccc----c--ccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482 244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR----L--HLGTSIALVEFCPTQRVVLTASKEWGAMITKL 317 (340)
Q Consensus 244 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~ 317 (340)
...+++++...|+ ++++|+++|.+.+||.+++...+.... + ..+..|.+.+|...|..|++|..|.+|++|.-
T Consensus 360 ~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 360 NAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred cceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence 9999999998776 888999999999999998765544311 1 11346899999999999999999999999987
Q ss_pred cCCC
Q 019482 318 TVPA 321 (340)
Q Consensus 318 ~~~~ 321 (340)
+...
T Consensus 439 De~a 442 (460)
T KOG0285|consen 439 DEHA 442 (460)
T ss_pred cccc
Confidence 6443
No 29
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.3e-37 Score=227.43 Aligned_cols=261 Identities=12% Similarity=0.172 Sum_probs=214.9
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
.+.|..++..| +...+| +.....|++|++... .+.+..++++|.+.|+++.|..+|+.+++|++
T Consensus 40 dsqVNrLeiTp---dk~~LA-------aa~~qhvRlyD~~S~------np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgse 103 (311)
T KOG0315|consen 40 DSQVNRLEITP---DKKDLA-------AAGNQHVRLYDLNSN------NPNPVATFEGHTKNVTAVGFQCDGRWMYTGSE 103 (311)
T ss_pred ccceeeEEEcC---Ccchhh-------hccCCeeEEEEccCC------CCCceeEEeccCCceEEEEEeecCeEEEecCC
Confidence 35677777777 444566 334556999999754 34466789999999999999999999999999
Q ss_pred CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCc-cceeEEEe
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDMDF 162 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~i~~~~~ 162 (340)
||+++|||++.......+ ++..+|+++..+|+...|++|..+|.|++||+.+..+...+.... ..|.++..
T Consensus 104 Dgt~kIWdlR~~~~qR~~--------~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v 175 (311)
T KOG0315|consen 104 DGTVKIWDLRSLSCQRNY--------QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTV 175 (311)
T ss_pred CceEEEEeccCcccchhc--------cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEE
Confidence 999999999985543332 477999999999999999999999999999999876655544433 48999999
Q ss_pred cCCCCeEEEeeCCCeEEEEEccCCee------EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC-c
Q 019482 163 SLDSEFLATTSTDGSARIWKTEDGVA------WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-N 235 (340)
Q Consensus 163 ~~~~~~l~~~~~d~~v~iwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~ 235 (340)
.|||.+++.+...|++++|++-..+. +..++ .+.+.+..+.+||++++ +++++.|.+++||+.++. +
T Consensus 176 ~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~-ah~~~il~C~lSPd~k~-----lat~ssdktv~iwn~~~~~k 249 (311)
T KOG0315|consen 176 MPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ-AHNGHILRCLLSPDVKY-----LATCSSDKTVKIWNTDDFFK 249 (311)
T ss_pred cCCCcEEEEecCCccEEEEEccCCCccccceEhhhee-cccceEEEEEECCCCcE-----EEeecCCceEEEEecCCcee
Confidence 99999999999999999999876543 33343 45567999999999998 899999999999999987 5
Q ss_pred EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEE
Q 019482 236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF 296 (340)
Q Consensus 236 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~ 296 (340)
....+.+|...+...+||.||+||++|+.|+.+++||+..++.++.. .+|+. ...+++.
T Consensus 250 le~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy-~gh~K-~~vc~~l 308 (311)
T KOG0315|consen 250 LELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY-QGHHK-AAVCVAL 308 (311)
T ss_pred eEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec-CCccc-ccEEEEe
Confidence 66678888899999999999999999999999999999999988776 45643 4444443
No 30
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.6e-37 Score=246.99 Aligned_cols=316 Identities=17% Similarity=0.211 Sum_probs=236.9
Q ss_pred CCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEE
Q 019482 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81 (340)
Q Consensus 2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 81 (340)
|+..+++-..++| .+.++|+|.. .+.++||....+. ..+..+++.-.++|..++|++++++|++.
T Consensus 57 EH~~~vtVAkySP---sG~yiASGD~------sG~vRIWdtt~~~------hiLKnef~v~aG~I~Di~Wd~ds~RI~av 121 (603)
T KOG0318|consen 57 EHAHQVTVAKYSP---SGFYIASGDV------SGKVRIWDTTQKE------HILKNEFQVLAGPIKDISWDFDSKRIAAV 121 (603)
T ss_pred cccceeEEEEeCC---CceEEeecCC------cCcEEEEeccCcc------eeeeeeeeecccccccceeCCCCcEEEEE
Confidence 5678899999999 4568998884 4559999887442 33445555566777788888877777765
Q ss_pred ecC----CCEEEEEecCcee------------------------------eeeecccc----CCCCCCCCCeEEEEEecC
Q 019482 82 TTN----GGCKLFEVYGGAT------------------------------DINLLAKK----MPPLQDAGPQKCLSFSVD 123 (340)
Q Consensus 82 ~~d----~~i~iw~~~~~~~------------------------------~~~~~~~~----~~~~~~~~~v~~~~~~~~ 123 (340)
++. |.+.+||.-+... ..-+...+ ...-.|..-|.|+.|+||
T Consensus 122 GEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPD 201 (603)
T KOG0318|consen 122 GEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPD 201 (603)
T ss_pred ecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCC
Confidence 543 3555666432110 00000000 111237789999999999
Q ss_pred CCeEEEccCCCcEEEEeCCCCceeeccc---cCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee-------
Q 019482 124 GSRFAAGGVDGHLRIMHWPSLRIILDEP---KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT------- 193 (340)
Q Consensus 124 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~------- 193 (340)
|+++++++.||++.+||-.+++.+..+. .|.+.|.++.|+||++.+++++.|.+++|||+.+.++++++.
T Consensus 202 G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~d 281 (603)
T KOG0318|consen 202 GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVED 281 (603)
T ss_pred CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhc
Confidence 9999999999999999999999888776 788899999999999999999999999999998766554421
Q ss_pred -----------------------------------cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE--
Q 019482 194 -----------------------------------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK-- 236 (340)
Q Consensus 194 -----------------------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-- 236 (340)
..|...|+++..+|++++ +++++.||.|.-||..++..
T Consensus 282 qqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~-----i~SgsyDG~I~~W~~~~g~~~~ 356 (603)
T KOG0318|consen 282 QQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT-----IYSGSYDGHINSWDSGSGTSDR 356 (603)
T ss_pred eEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE-----EEeeccCceEEEEecCCccccc
Confidence 134467999999999987 78999999999999754211
Q ss_pred -----------------------------Eee------------------------------------------eecc--
Q 019482 237 -----------------------------IGH------------------------------------------KRLL-- 243 (340)
Q Consensus 237 -----------------------------~~~------------------------------------------~~~~-- 243 (340)
++. +..+
T Consensus 357 ~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~ 436 (603)
T KOG0318|consen 357 LAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTK 436 (603)
T ss_pred cccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCc
Confidence 000 0000
Q ss_pred ------CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeec-ccccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482 244 ------RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW-SKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK 316 (340)
Q Consensus 244 ------~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~ 316 (340)
.....+++++|++.++++|++|+.|+||.+...+.... ....| ..+|+.+++|||+.+||++...+.+.+|+
T Consensus 437 ~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h-~a~iT~vaySpd~~yla~~Da~rkvv~yd 515 (603)
T KOG0318|consen 437 VSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEH-RAAITDVAYSPDGAYLAAGDASRKVVLYD 515 (603)
T ss_pred ceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecc-cCCceEEEECCCCcEEEEeccCCcEEEEE
Confidence 12345788999999999999999999999988664333 23345 67999999999999999999999999999
Q ss_pred ecCCCCCCCCccccccccccccCC
Q 019482 317 LTVPADWKGLSLPLLHSHSQNSVS 340 (340)
Q Consensus 317 ~~~~~~~~~~~~~~~h~~~v~~vs 340 (340)
+..... ....+..|...|++||
T Consensus 516 ~~s~~~--~~~~w~FHtakI~~~a 537 (603)
T KOG0318|consen 516 VASREV--KTNRWAFHTAKINCVA 537 (603)
T ss_pred cccCce--ecceeeeeeeeEEEEE
Confidence 976553 5567788999998875
No 31
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6.7e-38 Score=241.58 Aligned_cols=257 Identities=13% Similarity=0.160 Sum_probs=232.5
Q ss_pred CeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC
Q 019482 53 PLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV 132 (340)
Q Consensus 53 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 132 (340)
..+...+++|.+.|.|+++.|...+|++|+.|++++|||+.+++....+.. |...|..+++|+...|+++++.
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltG-------hi~~vr~vavS~rHpYlFs~ge 213 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTG-------HIETVRGVAVSKRHPYLFSAGE 213 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecc-------hhheeeeeeecccCceEEEecC
Confidence 345567899999999999999999999999999999999999988766653 7789999999999999999999
Q ss_pred CCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcc
Q 019482 133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP 212 (340)
Q Consensus 133 dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (340)
|+.|+.||++..+.++.+.+|-..|.+++.+|.-..|++|+.|.++++||+++...+..+.+ |..+|.++.+.|...+
T Consensus 214 dk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G-H~~~V~~V~~~~~dpq- 291 (460)
T KOG0285|consen 214 DKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG-HTNPVASVMCQPTDPQ- 291 (460)
T ss_pred CCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC-CCCcceeEEeecCCCc-
Confidence 99999999999999999999999999999999999999999999999999999999999985 4568999999987776
Q ss_pred eEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccccccee
Q 019482 213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292 (340)
Q Consensus 213 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~ 292 (340)
+++++.|++|++||++.++....+..|...+.+++.+|....+|+++.|. |+-|++..+..+..+ .+| ..-|+
T Consensus 292 ----vit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nl-sgh-~~iin 364 (460)
T KOG0285|consen 292 ----VITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNL-SGH-NAIIN 364 (460)
T ss_pred ----eEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcc-ccc-cceee
Confidence 89999999999999999999999999999999999999999999998875 999999999988874 566 57899
Q ss_pred eEEEecCCeEEEEEecCCcEEEEEecCCCCCCCC
Q 019482 293 LVEFCPTQRVVLTASKEWGAMITKLTVPADWKGL 326 (340)
Q Consensus 293 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 326 (340)
.++.+.|+ ++++|++.|.+..|+.+..-.++..
T Consensus 365 tl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 365 TLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRG 397 (460)
T ss_pred eeeeccCc-eEEEcCCceEEEEEecCcCcccccc
Confidence 99998776 6899999999999999876655433
No 32
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.5e-36 Score=279.63 Aligned_cols=290 Identities=13% Similarity=0.121 Sum_probs=227.3
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC-CCCeEEEE
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCS 81 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~ 81 (340)
+.+.|++++|+| ++.++|+|+ .++.|++|++................+. +...|.+++|+| ++.+|+++
T Consensus 482 ~~~~V~~i~fs~---dg~~latgg------~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~ 551 (793)
T PLN00181 482 SSNLVCAIGFDR---DGEFFATAG------VNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASS 551 (793)
T ss_pred CCCcEEEEEECC---CCCEEEEEe------CCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEE
Confidence 467899999999 445677666 5666999997532111100111222333 346799999987 47899999
Q ss_pred ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEE
Q 019482 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (340)
Q Consensus 82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~ 160 (340)
+.||.|++||+.+++....+. .|.+.|.+++|+| ++.+|++|+.|+.|++||++++..+..+. ++..+.++
T Consensus 552 ~~Dg~v~lWd~~~~~~~~~~~-------~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-~~~~v~~v 623 (793)
T PLN00181 552 NFEGVVQVWDVARSQLVTEMK-------EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-TKANICCV 623 (793)
T ss_pred eCCCeEEEEECCCCeEEEEec-------CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-cCCCeEEE
Confidence 999999999998876655443 3788999999997 78899999999999999999888776664 34678999
Q ss_pred EecC-CCCeEEEeeCCCeEEEEEccCCe-eEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC----
Q 019482 161 DFSL-DSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW---- 234 (340)
Q Consensus 161 ~~~~-~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~---- 234 (340)
.|++ ++.+|++|+.|+.|++||+++.+ .+..+. .|...|.++.|. ++.. +++++.|+.|++||++.+
T Consensus 624 ~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~-~h~~~V~~v~f~-~~~~-----lvs~s~D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 624 QFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI-GHSKTVSYVRFV-DSST-----LVSSSTDNTLKLWDLSMSISGI 696 (793)
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec-CCCCCEEEEEEe-CCCE-----EEEEECCCEEEEEeCCCCcccc
Confidence 9954 79999999999999999998765 344554 455689999997 4554 788899999999999743
Q ss_pred --cEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc-----------ccccccceeeEEEecCCe
Q 019482 235 --NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK-----------RLHLGTSIALVEFCPTQR 301 (340)
Q Consensus 235 --~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----------~~~~~~~i~~~~~~~~~~ 301 (340)
.++..+.+|...+..++|+|++.+|++|+.|+.|++|+.....+..... ..+....|.+++|+|++.
T Consensus 697 ~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~ 776 (793)
T PLN00181 697 NETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSS 776 (793)
T ss_pred CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCC
Confidence 5677788898899999999999999999999999999986554321110 111235799999999999
Q ss_pred EEEEEecCCcEEEEEe
Q 019482 302 VVLTASKEWGAMITKL 317 (340)
Q Consensus 302 ~l~~~~~dg~i~iw~~ 317 (340)
.|++|+.||.|+||++
T Consensus 777 ~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 777 TLVAANSTGNIKILEM 792 (793)
T ss_pred eEEEecCCCcEEEEec
Confidence 9999999999999986
No 33
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.2e-38 Score=233.06 Aligned_cols=287 Identities=13% Similarity=0.153 Sum_probs=244.3
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
.-||..++|+|-.+++.+|++.+..+. -.+-+=+ +....-++.||.+.|.....+.+-..-|+++.
T Consensus 14 trpvvdl~~s~itp~g~flisa~kd~~------pmlr~g~--------tgdwigtfeghkgavw~~~l~~na~~aasaaa 79 (334)
T KOG0278|consen 14 TRPVVDLAFSPITPDGYFLISASKDGK------PMLRNGD--------TGDWIGTFEGHKGAVWSATLNKNATRAASAAA 79 (334)
T ss_pred CcceeEEeccCCCCCceEEEEeccCCC------chhccCC--------CCCcEEeeeccCcceeeeecCchhhhhhhhcc
Confidence 578999999997778888886664332 2211111 44456789999999999999988888999999
Q ss_pred CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc-eeeccccCccceeEEEe
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMDF 162 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~i~~~~~ 162 (340)
|-+-++||.-++.....+ +|..-|..++|+.|.++|++|+.+..+++||++..+ +...+.+|.+.|..+.|
T Consensus 80 dftakvw~a~tgdelhsf--------~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~w 151 (334)
T KOG0278|consen 80 DFTAKVWDAVTGDELHSF--------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLW 151 (334)
T ss_pred cchhhhhhhhhhhhhhhh--------hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEE
Confidence 999999999887754443 577889999999999999999999999999998654 45667788889999999
Q ss_pred cCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec
Q 019482 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (340)
Q Consensus 163 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 242 (340)
....+.|++++.|++||+||.++++.++.+... .+|+++..+++|+ +++....+.|.+||..+...++.++.
T Consensus 152 c~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~--s~VtSlEvs~dG~------ilTia~gssV~Fwdaksf~~lKs~k~ 223 (334)
T KOG0278|consen 152 CHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN--SPVTSLEVSQDGR------ILTIAYGSSVKFWDAKSFGLLKSYKM 223 (334)
T ss_pred eccCceEEeeccCCceEEEEeccCcEEEEEecC--CCCcceeeccCCC------EEEEecCceeEEeccccccceeeccC
Confidence 998889999999999999999999999999754 4699999999999 46667788899999999988877664
Q ss_pred cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482 243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD 322 (340)
Q Consensus 243 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (340)
...|.+.+++|+...+++|++|..++.||..+++.+.....+| -++|.++.|+|||...++||.||+|++|.....+.
T Consensus 224 -P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh-~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 224 -PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH-FGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred -ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC-CCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 3478999999999999999999999999999999888766777 47999999999999999999999999999875553
No 34
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.5e-36 Score=225.68 Aligned_cols=268 Identities=15% Similarity=0.179 Sum_probs=219.7
Q ss_pred eeEEEecCCCCeeEEEEcCC-CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC
Q 019482 55 VTYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD 133 (340)
Q Consensus 55 ~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 133 (340)
....+++|.+.+..++|+|- |..||+++.|+.|++|+...+.. ........-.|...|+.++|+|.|++|++|+.|
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s---~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS---WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc---EEEEEeccccchheeeeeeecCCCcEEEEeecc
Confidence 45678899999999999997 88999999999999999985221 111111122488999999999999999999999
Q ss_pred CcEEEEeCCC--CceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCC---eeEEEeecCCCCceeeEEEccC
Q 019482 134 GHLRIMHWPS--LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG---VAWTFLTRNSDEKIELCRFSKD 208 (340)
Q Consensus 134 g~i~~~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~ 208 (340)
.++.||.-.. .+++..+.+|...|.+++|+++|++||++++|.+|-||.+..+ ++...+..| ...|..+.|+|.
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H-tqDVK~V~WHPt 161 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH-TQDVKHVIWHPT 161 (312)
T ss_pred ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc-cccccEEEEcCC
Confidence 9999997653 3678888899999999999999999999999999999999754 445566544 457999999998
Q ss_pred CCcceEEEEEecCCcceEEEEECC---CCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc
Q 019482 209 GTKPFLFCTVQRGDKALLAVYDIS---TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285 (340)
Q Consensus 209 ~~~~~~~~~~~~~~d~~i~i~d~~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 285 (340)
... +++++.|++|++|+-. ...+++.+.+|...+.+++|+|.|..|++++.|+.++||-+.+ .+...
T Consensus 162 ~dl-----L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~~ 231 (312)
T KOG0645|consen 162 EDL-----LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSGM 231 (312)
T ss_pred cce-----eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----Ccchh
Confidence 876 8999999999999876 4457888999999999999999999999999999999998763 23334
Q ss_pred ccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCC----ccccccccccccC
Q 019482 286 HLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGL----SLPLLHSHSQNSV 339 (340)
Q Consensus 286 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~----~~~~~h~~~v~~v 339 (340)
| ..++..++|. ...|++++.|+.|+++.-......+.+ +....|...||+|
T Consensus 232 ~-sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV 286 (312)
T KOG0645|consen 232 H-SRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSV 286 (312)
T ss_pred c-ccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceE
Confidence 4 5689999998 457999999999999987643222222 3566788888876
No 35
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-37 Score=243.89 Aligned_cols=289 Identities=13% Similarity=0.120 Sum_probs=237.1
Q ss_pred CCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEE
Q 019482 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81 (340)
Q Consensus 2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 81 (340)
++..+|.-+.|++ ++..+|+++ .|.+..+|.+..+.. .....++.+|..+|..+.||||.++|+++
T Consensus 222 ~htdEVWfl~FS~---nGkyLAsaS------kD~Taiiw~v~~d~~-----~kl~~tlvgh~~~V~yi~wSPDdryLlaC 287 (519)
T KOG0293|consen 222 DHTDEVWFLQFSH---NGKYLASAS------KDSTAIIWIVVYDVH-----FKLKKTLVGHSQPVSYIMWSPDDRYLLAC 287 (519)
T ss_pred hCCCcEEEEEEcC---CCeeEeecc------CCceEEEEEEecCcc-----eeeeeeeecccCceEEEEECCCCCeEEec
Confidence 3567899999999 556788766 555689999886653 34567899999999999999999999999
Q ss_pred ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCc-cceeEE
Q 019482 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDM 160 (340)
Q Consensus 82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~i~~~ 160 (340)
+.+..+.+||+.++.....+.. .+...+.+.+|.|||..+++|+.|+++..||+.... .....+.. ..|.++
T Consensus 288 g~~e~~~lwDv~tgd~~~~y~~------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dl 360 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGDLRHLYPS------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDL 360 (519)
T ss_pred CchHheeeccCCcchhhhhccc------CcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEE
Confidence 9999999999999987554432 145688999999999999999999999999987533 33333333 369999
Q ss_pred EecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee
Q 019482 161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (340)
Q Consensus 161 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 240 (340)
+..+||+++++...|..+++++.++........ ...+++++..|.++++ ++..-.+..+++||+.....+..+
T Consensus 361 ait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis--e~~~its~~iS~d~k~-----~LvnL~~qei~LWDl~e~~lv~kY 433 (519)
T KOG0293|consen 361 AITYDGKYVLLVTVDKKIRLYNREARVDRGLIS--EEQPITSFSISKDGKL-----ALVNLQDQEIHLWDLEENKLVRKY 433 (519)
T ss_pred EEcCCCcEEEEEecccceeeechhhhhhhcccc--ccCceeEEEEcCCCcE-----EEEEcccCeeEEeecchhhHHHHh
Confidence 999999999999999999999998766654444 2347999999999997 667778999999999988888888
Q ss_pred eccCCC--eeEEEECC-CCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCC-eEEEEEecCCcEEEEE
Q 019482 241 RLLRKP--ASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ-RVVLTASKEWGAMITK 316 (340)
Q Consensus 241 ~~~~~~--i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iw~ 316 (340)
.+|... +-.-+|-- +..++++|++|++|+||+..+++++..+ .+| ...|++++|+|.. .++|++|+||+|+||.
T Consensus 434 ~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L-sGH-s~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 434 FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL-SGH-SKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred hcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee-cCC-cceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 877643 33334543 5589999999999999999999999887 578 5799999999965 6899999999999998
Q ss_pred ecCC
Q 019482 317 LTVP 320 (340)
Q Consensus 317 ~~~~ 320 (340)
...+
T Consensus 512 ~~~~ 515 (519)
T KOG0293|consen 512 PSDN 515 (519)
T ss_pred CCcc
Confidence 7654
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-37 Score=253.09 Aligned_cols=283 Identities=12% Similarity=0.143 Sum_probs=251.0
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
...+|.|+.++|..+ -+++ +-.++.+.||+++ +......++..+-+|++..|-+..+.+++|+
T Consensus 12 rSdRVKsVd~HPteP--w~la-------~LynG~V~IWnye--------tqtmVksfeV~~~PvRa~kfiaRknWiv~Gs 74 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEP--WILA-------ALYNGDVQIWNYE--------TQTMVKSFEVSEVPVRAAKFIARKNWIVTGS 74 (794)
T ss_pred cCCceeeeecCCCCc--eEEE-------eeecCeeEEEecc--------cceeeeeeeecccchhhheeeeccceEEEec
Confidence 467899999999654 3444 4466779999999 6667777888889999999999999999999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC-ceeeccccCccceeEEE
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-RIILDEPKAHKSVLDMD 161 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~i~~~~ 161 (340)
.|..|+||+..+.+....+.. |...|++++.+|...++++++.|-+|++||.+.. .+.+.+.+|..-|.+++
T Consensus 75 DD~~IrVfnynt~ekV~~FeA-------H~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~ 147 (794)
T KOG0276|consen 75 DDMQIRVFNYNTGEKVKTFEA-------HSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVA 147 (794)
T ss_pred CCceEEEEecccceeeEEeec-------cccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEE
Confidence 999999999999998887764 8899999999999999999999999999999754 56778888888999999
Q ss_pred ecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee
Q 019482 162 FSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (340)
Q Consensus 162 ~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 240 (340)
|+| |.+.+++++-|++|++|.+.+..+..++.+|. ..|+++.+-+.|..++ ++++++|..+++||..+..+++++
T Consensus 148 fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHe-kGVN~Vdyy~~gdkpy---lIsgaDD~tiKvWDyQtk~CV~TL 223 (794)
T KOG0276|consen 148 FNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHE-KGVNCVDYYTGGDKPY---LISGADDLTIKVWDYQTKSCVQTL 223 (794)
T ss_pred ecCCCccceeeeeccccEEEEEcCCCCCceeeeccc-cCcceEEeccCCCcce---EEecCCCceEEEeecchHHHHHHh
Confidence 999 78899999999999999999999999998554 5699999999987766 699999999999999999999999
Q ss_pred eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEE
Q 019482 241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMIT 315 (340)
Q Consensus 241 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 315 (340)
.+|...|..+.|+|.-..+++|++||+++||+..+.+....+..+- ..+++++-.+.++.++.|.++|.+.+-
T Consensus 224 eGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~Deg~i~v~ 296 (794)
T KOG0276|consen 224 EGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL--ERVWCIAAHKGDGKIAVGFDEGSVTVK 296 (794)
T ss_pred hcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCC--ceEEEEeecCCCCeEEEeccCCcEEEE
Confidence 9999999999999999999999999999999999988887775443 589999999988889999888877553
No 37
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=260.96 Aligned_cols=260 Identities=20% Similarity=0.221 Sum_probs=220.7
Q ss_pred eEEEecC-CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCcee--eeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC
Q 019482 56 TYVFDES-EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT--DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV 132 (340)
Q Consensus 56 ~~~~~~h-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 132 (340)
...+.+| ...|.++.|+|+|+.+++++.++.+++|+....+. ...+ ..|...|.+++|+|+++++++++.
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-------~~h~~~v~~~~fs~d~~~l~s~s~ 223 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-------SGHTRGVSDVAFSPDGSYLLSGSD 223 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-------cccccceeeeEECCCCcEEEEecC
Confidence 4555554 77899999999999999999999999999965552 2111 358899999999999999999999
Q ss_pred CCcEEEEeC-CCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCc
Q 019482 133 DGHLRIMHW-PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (340)
Q Consensus 133 dg~i~~~d~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (340)
|++|++||+ ..+..+..+.+|...|++++|+|+++++++|+.|++|++||+++++++..+..+. ..|.+++|++++..
T Consensus 224 D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs-~~is~~~f~~d~~~ 302 (456)
T KOG0266|consen 224 DKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHS-DGISGLAFSPDGNL 302 (456)
T ss_pred CceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccC-CceEEEEECCCCCE
Confidence 999999999 4557888888999999999999999999999999999999999999999998655 58999999999998
Q ss_pred ceEEEEEecCCcceEEEEECCCCc--EEeeeeccCCC--eeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccc
Q 019482 212 PFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRKP--ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL 287 (340)
Q Consensus 212 ~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~--i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 287 (340)
+++++.|+.|++||+.++. +...+..+... ++++.|+|++++++++..|+.+++||+..+....... .|.
T Consensus 303 -----l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~-~~~ 376 (456)
T KOG0266|consen 303 -----LVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT-GHS 376 (456)
T ss_pred -----EEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec-ccC
Confidence 7888889999999999999 45566665544 9999999999999999999999999999988877664 443
Q ss_pred cc--ceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCcccccc
Q 019482 288 GT--SIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLH 332 (340)
Q Consensus 288 ~~--~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h 332 (340)
.. .+.+...++.+.++++|+.|+.|.+|++.... .......|
T Consensus 377 ~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~---~~~~l~~h 420 (456)
T KOG0266|consen 377 NLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG---ILQRLEGH 420 (456)
T ss_pred CcceeEecccccCCCCeEEEEeCCceEEEEeCCccc---hhhhhcCC
Confidence 33 45555667899999999999999999997533 34455555
No 38
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-36 Score=254.62 Aligned_cols=285 Identities=16% Similarity=0.190 Sum_probs=237.2
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 84 (340)
.+|+.++|-.+.+ ..+|. ++....+++|+.. ...+ ..+.||++.|.++....+|.+|++|+.|
T Consensus 324 dEI~Dm~~lG~e~--~~laV------ATNs~~lr~y~~~--------~~~c-~ii~GH~e~vlSL~~~~~g~llat~sKD 386 (775)
T KOG0319|consen 324 DEILDMKFLGPEE--SHLAV------ATNSPELRLYTLP--------TSYC-QIIPGHTEAVLSLDVWSSGDLLATGSKD 386 (775)
T ss_pred hhheeeeecCCcc--ceEEE------EeCCCceEEEecC--------CCce-EEEeCchhheeeeeecccCcEEEEecCC
Confidence 5677888876443 33333 3345569999554 2333 3689999999999966688999999999
Q ss_pred CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCC-CeEEEccCCCcEEEEeCCCCcee---------eccccCc
Q 019482 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRII---------LDEPKAH 154 (340)
Q Consensus 85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~---------~~~~~~~ 154 (340)
.++++|.++.+........ ....|.+.|.+++++..+ .+|++++.|.++++|++...+.. .....|.
T Consensus 387 ~svilWr~~~~~~~~~~~a---~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHd 463 (775)
T KOG0319|consen 387 KSVILWRLNNNCSKSLCVA---QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHD 463 (775)
T ss_pred ceEEEEEecCCcchhhhhh---hhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhc
Confidence 9999999955443222221 223588999999997744 58999999999999999762211 1233567
Q ss_pred cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC
Q 019482 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234 (340)
Q Consensus 155 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 234 (340)
..|++++++|+.++++|||.|.+.+||++++.+...++.+|. ..+.++.|+|..+. +++++.|.+|+||.+.+.
T Consensus 464 KdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~-RGvw~V~Fs~~dq~-----laT~SgD~TvKIW~is~f 537 (775)
T KOG0319|consen 464 KDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHT-RGVWCVSFSKNDQL-----LATCSGDKTVKIWSISTF 537 (775)
T ss_pred ccccceEecCCCceEEecccccceeeecccCceEEEEeeCCc-cceEEEEeccccce-----eEeccCCceEEEEEeccc
Confidence 799999999999999999999999999999988888888665 46999999999886 899999999999999999
Q ss_pred cEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEE
Q 019482 235 NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI 314 (340)
Q Consensus 235 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 314 (340)
.+++++.+|...|..+.|-.+|+.|++++.||.|++|++++++++..+. .| .+.|++++-+|.+.++++|+.||.|.+
T Consensus 538 SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD-~H-~DrvWaL~~~~~~~~~~tgg~Dg~i~~ 615 (775)
T KOG0319|consen 538 SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD-AH-NDRVWALSVSPLLDMFVTGGGDGRIIF 615 (775)
T ss_pred eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh-hc-cceeEEEeecCccceeEecCCCeEEEE
Confidence 9999999999999999999999999999999999999999999999884 67 689999999999999999999999999
Q ss_pred EEe
Q 019482 315 TKL 317 (340)
Q Consensus 315 w~~ 317 (340)
|.=
T Consensus 616 wkD 618 (775)
T KOG0319|consen 616 WKD 618 (775)
T ss_pred eec
Confidence 964
No 39
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-36 Score=222.30 Aligned_cols=248 Identities=17% Similarity=0.173 Sum_probs=216.7
Q ss_pred eEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCc
Q 019482 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH 135 (340)
Q Consensus 56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 135 (340)
...+..|+++|.++.|+-+|+|.++++.|.+|++|+...+..+..+.. |...|..++.+.|+..|++++.|..
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg-------hG~EVlD~~~s~Dnskf~s~GgDk~ 82 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG-------HGHEVLDAALSSDNSKFASCGGDKA 82 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecC-------CCceeeeccccccccccccCCCCce
Confidence 356789999999999999999999999999999999999988877754 7789999999999999999999999
Q ss_pred EEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCC--eeEEEeecCCCCceeeEEEccCCCcce
Q 019482 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG--VAWTFLTRNSDEKIELCRFSKDGTKPF 213 (340)
Q Consensus 136 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (340)
+.+||+++|+...++.+|..+|+.++|+.+...+++|+.|.++++||.++. ++++.+.... ..|.++......
T Consensus 83 v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~-D~V~Si~v~~he---- 157 (307)
T KOG0316|consen 83 VQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK-DGVSSIDVAEHE---- 157 (307)
T ss_pred EEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc-CceeEEEecccE----
Confidence 999999999999999999999999999999999999999999999999864 5666665443 468888876442
Q ss_pred EEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccc-ccee
Q 019482 214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLG-TSIA 292 (340)
Q Consensus 214 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~i~ 292 (340)
+++++.||+++.||++.|+... .....+|++++|++|++..++++.|+.+++.|-.+|+.+..+. +|.. ..-.
T Consensus 158 ---IvaGS~DGtvRtydiR~G~l~s--Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk-Ghkn~eykl 231 (307)
T KOG0316|consen 158 ---IVAGSVDGTVRTYDIRKGTLSS--DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK-GHKNMEYKL 231 (307)
T ss_pred ---EEeeccCCcEEEEEeecceeeh--hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc-ccccceeee
Confidence 7999999999999999998753 3445689999999999999999999999999999999998774 5532 2345
Q ss_pred eEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 293 LVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 293 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
..+++.....+++|++||.|++|++....
T Consensus 232 dc~l~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 232 DCCLNQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred eeeecccceeEEeccCCceEEEEEeccce
Confidence 66788888899999999999999997554
No 40
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.1e-36 Score=252.12 Aligned_cols=304 Identities=14% Similarity=0.180 Sum_probs=247.3
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCC--eEEE
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD--DFVC 80 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~ 80 (340)
+..||.-++|.|. ..+++.|+ .++.+++|++. ...+...|+||.+.|.++.|+|+-. .|++
T Consensus 104 He~Pvi~ma~~~~---g~LlAtgg------aD~~v~VWdi~--------~~~~th~fkG~gGvVssl~F~~~~~~~lL~s 166 (775)
T KOG0319|consen 104 HEAPVITMAFDPT---GTLLATGG------ADGRVKVWDIK--------NGYCTHSFKGHGGVVSSLLFHPHWNRWLLAS 166 (775)
T ss_pred cCCCeEEEEEcCC---CceEEecc------ccceEEEEEee--------CCEEEEEecCCCceEEEEEeCCccchhheee
Confidence 5789999999994 46788777 67779999998 7788899999999999999999765 5889
Q ss_pred EecCCCEEEEEecCcee-eeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceee-----------
Q 019482 81 STTNGGCKLFEVYGGAT-DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL----------- 148 (340)
Q Consensus 81 ~~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~----------- 148 (340)
|..|+.+++||+.+... ..... .|.+.|+++.|++|+..++++++|..+.+||+.+.+...
T Consensus 167 g~~D~~v~vwnl~~~~tcl~~~~-------~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~v 239 (775)
T KOG0319|consen 167 GATDGTVRVWNLNDKRTCLHTMI-------LHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESV 239 (775)
T ss_pred cCCCceEEEEEcccCchHHHHHH-------hhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeE
Confidence 99999999999986654 22211 377889999999998888888888888888873210000
Q ss_pred --------------------------------------------------------------------------------
Q 019482 149 -------------------------------------------------------------------------------- 148 (340)
Q Consensus 149 -------------------------------------------------------------------------------- 148 (340)
T Consensus 240 v~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i 319 (775)
T KOG0319|consen 240 VRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI 319 (775)
T ss_pred EEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhh
Confidence
Q ss_pred ----------------------------------------ccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee
Q 019482 149 ----------------------------------------DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA 188 (340)
Q Consensus 149 ----------------------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~ 188 (340)
.+.+|.+.|.++....+|-+|++|+.|.++++|.++++..
T Consensus 320 vG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~ 399 (775)
T KOG0319|consen 320 VGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS 399 (775)
T ss_pred cCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc
Confidence 0234555677777545667888999999999996632110
Q ss_pred ------------------------------------EEE-------------------eecCCCCceeeEEEccCCCcce
Q 019482 189 ------------------------------------WTF-------------------LTRNSDEKIELCRFSKDGTKPF 213 (340)
Q Consensus 189 ------------------------------------~~~-------------------~~~~~~~~v~~~~~~~~~~~~~ 213 (340)
++. ....|+..|++++.+|+.+.
T Consensus 400 ~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkL-- 477 (775)
T KOG0319|consen 400 KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKL-- 477 (775)
T ss_pred hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCce--
Confidence 000 01134557899999999987
Q ss_pred EEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceee
Q 019482 214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL 293 (340)
Q Consensus 214 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~ 293 (340)
+++++.|.+.++|++........+.+|...+.++.|+|..+.++++|.|++|+||.+.+..++..+ .+| ...|..
T Consensus 478 ---iAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~-eGH-~~aVlr 552 (775)
T KOG0319|consen 478 ---IATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF-EGH-TSAVLR 552 (775)
T ss_pred ---EEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeee-cCc-cceeEe
Confidence 899999999999999999999999999999999999999999999999999999999999999988 477 689999
Q ss_pred EEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccCC
Q 019482 294 VEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSVS 340 (340)
Q Consensus 294 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~vs 340 (340)
+.|-.+|..|++++.||-+++|+++... .......|.+.|.+++
T Consensus 553 a~F~~~~~qliS~~adGliKlWnikt~e---C~~tlD~H~DrvWaL~ 596 (775)
T KOG0319|consen 553 ASFIRNGKQLISAGADGLIKLWNIKTNE---CEMTLDAHNDRVWALS 596 (775)
T ss_pred eeeeeCCcEEEeccCCCcEEEEeccchh---hhhhhhhccceeEEEe
Confidence 9999999999999999999999997655 5677888999888764
No 41
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-36 Score=258.23 Aligned_cols=284 Identities=15% Similarity=0.218 Sum_probs=242.7
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
+.+|..++|+|..+ .+.++- ..+.|++|++. -..+...+.+|+++|..++|+|++.++++|+.
T Consensus 9 SsRvKglsFHP~rP---wILtsl------HsG~IQlWDYR--------M~tli~rFdeHdGpVRgv~FH~~qplFVSGGD 71 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRP---WILTSL------HSGVIQLWDYR--------MGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGD 71 (1202)
T ss_pred cccccceecCCCCC---EEEEee------cCceeeeehhh--------hhhHHhhhhccCCccceeeecCCCCeEEecCC
Confidence 57899999999654 444333 55669999998 34445668899999999999999999999999
Q ss_pred CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEec
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~ 163 (340)
|..|++|+....++...+.+ |-..|+.+.|++.-.+|++++.|.+|+||+..+++++..+.+|...|.|..|+
T Consensus 72 DykIkVWnYk~rrclftL~G-------HlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh 144 (1202)
T KOG0292|consen 72 DYKIKVWNYKTRRCLFTLLG-------HLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH 144 (1202)
T ss_pred ccEEEEEecccceehhhhcc-------ccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC
Confidence 99999999999988777654 88999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeeCCCeEEEEEccC--------C--------------------eeEEEeecCCCCceeeEEEccCCCcceEE
Q 019482 164 LDSEFLATTSTDGSARIWKTED--------G--------------------VAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (340)
Q Consensus 164 ~~~~~l~~~~~d~~v~iwd~~~--------~--------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (340)
|....++++|-|.+||+||+.. + ..++.+..+|+..|+-++|+|.-..
T Consensus 145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl---- 220 (1202)
T KOG0292|consen 145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL---- 220 (1202)
T ss_pred CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce----
Confidence 9999999999999999999852 1 1122233456667999999998876
Q ss_pred EEEecCCcceEEEEECCCCc--EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceee
Q 019482 216 CTVQRGDKALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL 293 (340)
Q Consensus 216 ~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~ 293 (340)
++++++|..|++|.....+ .+.+.++|.++|.++-|+|..+++++.++|++|++||+.....++.+...+ +.-+.
T Consensus 221 -iVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrren--dRFW~ 297 (1202)
T KOG0292|consen 221 -IVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREN--DRFWI 297 (1202)
T ss_pred -EEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccC--CeEEE
Confidence 8999999999999987654 456678999999999999999999999999999999999998888876554 58999
Q ss_pred EEEecCCeEEEEEecCCcEEEEEecC
Q 019482 294 VEFCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 294 ~~~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
++-+|..+++++| .|+.+.|+.++.
T Consensus 298 laahP~lNLfAAg-HDsGm~VFkleR 322 (1202)
T KOG0292|consen 298 LAAHPELNLFAAG-HDSGMIVFKLER 322 (1202)
T ss_pred EEecCCcceeeee-cCCceEEEEEcc
Confidence 9999999866655 677788898873
No 42
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.5e-35 Score=241.49 Aligned_cols=263 Identities=21% Similarity=0.283 Sum_probs=222.1
Q ss_pred EEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEE
Q 019482 58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR 137 (340)
Q Consensus 58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 137 (340)
.+++|.++|.+++|+|++++|++++.++.+++|++.+.+...... .|...+..+.|+|+++++++++.+|.|+
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 76 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK-------GHTGPVRDVAASADGTYLASGSSDKTIR 76 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe-------cCCcceeEEEECCCCCEEEEEcCCCeEE
Confidence 466899999999999999999999999999999998776443332 2567788999999999999999999999
Q ss_pred EEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEE
Q 019482 138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT 217 (340)
Q Consensus 138 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 217 (340)
+|++.+++....+..+...+.++.|+|+++++++++.|+.+++||+++++....+. .+...+.+++|+|++.. +
T Consensus 77 i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~-----l 150 (289)
T cd00200 77 LWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGTF-----V 150 (289)
T ss_pred EEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCCE-----E
Confidence 99999887777777777799999999998888888889999999999888887776 34567999999999774 5
Q ss_pred EecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEe
Q 019482 218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC 297 (340)
Q Consensus 218 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~ 297 (340)
++++.++.|++||+++++.+..+..+...+.++.|+|+++.+++++.|+.|++||+++++....+. .| ...+.+++|+
T Consensus 151 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~-~~~i~~~~~~ 228 (289)
T cd00200 151 ASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR-GH-ENGVNSVAFS 228 (289)
T ss_pred EEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh-hc-CCceEEEEEc
Confidence 566669999999999988888888888899999999999999999999999999999888776653 44 4689999999
Q ss_pred cCCeEEEEEecCCcEEEEEecCCCCCCCCcccccccccccc
Q 019482 298 PTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNS 338 (340)
Q Consensus 298 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~ 338 (340)
|++.++++++.||.+++|++..... ......|...+.+
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~~~---~~~~~~~~~~i~~ 266 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTGEC---VQTLSGHTNSVTS 266 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCcee---EEEccccCCcEEE
Confidence 9999999988899999999975432 2223355555543
No 43
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=5.2e-37 Score=236.09 Aligned_cols=271 Identities=15% Similarity=0.178 Sum_probs=224.9
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
...|+|+.+.. ..+++|. .|++|++|+.+ +..+...+.||++.|.|+.|. .+.+++|+.
T Consensus 197 skgVYClQYDD-----~kiVSGl------rDnTikiWD~n--------~~~c~~~L~GHtGSVLCLqyd--~rviisGSS 255 (499)
T KOG0281|consen 197 SKGVYCLQYDD-----EKIVSGL------RDNTIKIWDKN--------SLECLKILTGHTGSVLCLQYD--ERVIVSGSS 255 (499)
T ss_pred CCceEEEEecc-----hhhhccc------ccCceEEeccc--------cHHHHHhhhcCCCcEEeeecc--ceEEEecCC
Confidence 34578888765 2345444 68889999987 666677899999999999994 669999999
Q ss_pred CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCce---eeccccCccceeEE
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI---ILDEPKAHKSVLDM 160 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---~~~~~~~~~~i~~~ 160 (340)
|.+|++||+++++....+.. |...|..+.|+. .++++++.|.++.+||+..... ...+.+|...|+.+
T Consensus 256 DsTvrvWDv~tge~l~tlih-------HceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvV 326 (499)
T KOG0281|consen 256 DSTVRVWDVNTGEPLNTLIH-------HCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 326 (499)
T ss_pred CceEEEEeccCCchhhHHhh-------hcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeee
Confidence 99999999999998776654 788999999974 4999999999999999976542 33456788899999
Q ss_pred EecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee
Q 019482 161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (340)
Q Consensus 161 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 240 (340)
.|+ .+++++++.|.+|++|++.+++.+.++.++.. .|.|+++ .++. +++|+.|.+|++||+..|.++..+
T Consensus 327 dfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkR-GIAClQY--r~rl-----vVSGSSDntIRlwdi~~G~cLRvL 396 (499)
T KOG0281|consen 327 DFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKR-GIACLQY--RDRL-----VVSGSSDNTIRLWDIECGACLRVL 396 (499)
T ss_pred ccc--cceEEEecCCceEEEEeccceeeehhhhcccc-cceehhc--cCeE-----EEecCCCceEEEEeccccHHHHHH
Confidence 997 66999999999999999999999999986654 5777766 4554 789999999999999999999999
Q ss_pred eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecc--------cccccccceeeEEEecCCeEEEEEecCCcE
Q 019482 241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS--------KRLHLGTSIALVEFCPTQRVVLTASKEWGA 312 (340)
Q Consensus 241 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 312 (340)
.+|+.-|.++.| |.+.+++|+.||+|++||+..+...+.. ...| .+.|..+.|. ...+++++.|.+|
T Consensus 397 eGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~h-sgRVFrLQFD--~fqIvsssHddtI 471 (499)
T KOG0281|consen 397 EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH-SGRVFRLQFD--EFQIISSSHDDTI 471 (499)
T ss_pred hchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhc-cceeEEEeec--ceEEEeccCCCeE
Confidence 999999999999 5679999999999999999886544211 1234 5689999884 5789999999999
Q ss_pred EEEEecC
Q 019482 313 MITKLTV 319 (340)
Q Consensus 313 ~iw~~~~ 319 (340)
.||++..
T Consensus 472 LiWdFl~ 478 (499)
T KOG0281|consen 472 LIWDFLN 478 (499)
T ss_pred EEEEcCC
Confidence 9999964
No 44
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.4e-35 Score=245.25 Aligned_cols=311 Identities=14% Similarity=0.125 Sum_probs=260.6
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCC-cccCCeeeEEEecCCCCeeEEEEcCCCCeEEEE
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS-VYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 81 (340)
...++.+++|.|.+...+-++ .-.+|.+..|.++..... ..+......++.||...|.+++++.+...+++|
T Consensus 319 ~~~kiks~dv~~~~~~~~~lv-------~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg 391 (888)
T KOG0306|consen 319 TSAKIKSFDVTPSGGTENTLV-------LLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG 391 (888)
T ss_pred chhheeEEEEEecCCcceeEE-------EeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeec
Confidence 457889999999776555555 246888999999873322 222445567889999999999999888777776
Q ss_pred ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEE
Q 019482 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (340)
Q Consensus 82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~ 161 (340)
+. +.+++|+..+.+++..+.. +.+.+..|-|.++++++|...|.+.+||+.+...+.....|.+.|.+++
T Consensus 392 a~-~SikiWn~~t~kciRTi~~---------~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~ 461 (888)
T KOG0306|consen 392 AG-ESIKIWNRDTLKCIRTITC---------GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSIS 461 (888)
T ss_pred CC-CcEEEEEccCcceeEEecc---------ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeee
Confidence 65 4599999999998887743 5789999999999999999999999999999988888888999999999
Q ss_pred ecCCCCeEEEeeCCCeEEEEEccC-----CeeEEEee------cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEE
Q 019482 162 FSLDSEFLATTSTDGSARIWKTED-----GVAWTFLT------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD 230 (340)
Q Consensus 162 ~~~~~~~l~~~~~d~~v~iwd~~~-----~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d 230 (340)
.+||++.+++|+.|.+|++||+.- +...+.+. ......|.|+.+|||+++ ++.+--|+++++|-
T Consensus 462 ~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~-----LaVsLLdnTVkVyf 536 (888)
T KOG0306|consen 462 LSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL-----LAVSLLDNTVKVYF 536 (888)
T ss_pred ecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE-----EEEEeccCeEEEEE
Confidence 999999999999999999999752 11111111 112356999999999997 67777899999999
Q ss_pred CCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCC
Q 019482 231 ISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW 310 (340)
Q Consensus 231 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 310 (340)
+++.+....+.+|.-||.++..|||++.+++|+.|..|++|-+.-|.+.+.+. +| ++.|.++.|-|+...++++|.|+
T Consensus 537 lDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f-AH-dDSvm~V~F~P~~~~FFt~gKD~ 614 (888)
T KOG0306|consen 537 LDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF-AH-DDSVMSVQFLPKTHLFFTCGKDG 614 (888)
T ss_pred ecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh-cc-cCceeEEEEcccceeEEEecCcc
Confidence 99999888999999999999999999999999999999999999999988874 67 68999999999999999999999
Q ss_pred cEEEEEecCCCCCCCCccccccccccccCC
Q 019482 311 GAMITKLTVPADWKGLSLPLLHSHSQNSVS 340 (340)
Q Consensus 311 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~vs 340 (340)
.|+-||-+ .+..+.....|...|.++|
T Consensus 615 kvKqWDg~---kFe~iq~L~~H~~ev~cLa 641 (888)
T KOG0306|consen 615 KVKQWDGE---KFEEIQKLDGHHSEVWCLA 641 (888)
T ss_pred eEEeechh---hhhhheeeccchheeeeeE
Confidence 99999874 4446777778887777654
No 45
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-35 Score=235.71 Aligned_cols=284 Identities=17% Similarity=0.194 Sum_probs=228.0
Q ss_pred CCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEE
Q 019482 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81 (340)
Q Consensus 2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 81 (340)
+...+|.+++|+|..+. .++++++ -.+.||... .......+....+.|+++.|-.||++||+|
T Consensus 24 ke~~~vssl~fsp~~P~-d~aVt~S--------~rvqly~~~--------~~~~~k~~srFk~~v~s~~fR~DG~LlaaG 86 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPY-DFAVTSS--------VRVQLYSSV--------TRSVRKTFSRFKDVVYSVDFRSDGRLLAAG 86 (487)
T ss_pred cccCcceeEecCCCCCC-ceEEecc--------cEEEEEecc--------hhhhhhhHHhhccceeEEEeecCCeEEEcc
Confidence 34678999999996554 3444333 237777654 222223344456789999999999999999
Q ss_pred ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeCCCCceeeccccCccceeEE
Q 019482 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (340)
Q Consensus 82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~ 160 (340)
...|.|+|+|..+......+. .|..++..+.|+|+ +..|++|+.|+.+++||+.+......+.+|.+.|.+.
T Consensus 87 D~sG~V~vfD~k~r~iLR~~~-------ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 87 DESGHVKVFDMKSRVILRQLY-------AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG 159 (487)
T ss_pred CCcCcEEEeccccHHHHHHHh-------hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence 999999999965533333332 38899999999994 5678889999999999999988766888999999999
Q ss_pred EecC-CCCeEEEeeCCCeEEEEEccCC-eeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc-EE
Q 019482 161 DFSL-DSEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KI 237 (340)
Q Consensus 161 ~~~~-~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~ 237 (340)
+|+| ++.++++|+.||.|++||.+.. ..+.++ .|..+|..+.+-|.|.. ++......+++||+-+|. .+
T Consensus 160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el--nhg~pVe~vl~lpsgs~------iasAgGn~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 160 DISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL--NHGCPVESVLALPSGSL------IASAGGNSVKVWDLTTGGQLL 231 (487)
T ss_pred ccccCCCeEEEecCCCceEEEEEeccCCceeEEe--cCCCceeeEEEcCCCCE------EEEcCCCeEEEEEecCCceeh
Confidence 9999 5668999999999999999987 555555 47778999999999984 445557789999999655 45
Q ss_pred eeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482 238 GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL 317 (340)
Q Consensus 238 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~ 317 (340)
..+..|...|+|+.+..++..|++|+-|+.+++||+.+.+.+..... .++|.+++.+|+++.++.|..||.+.+-+.
T Consensus 232 ~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 232 TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---PGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred hhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec---ccceeeEEecCCCceEEEecccceeeeehh
Confidence 55555999999999999999999999999999999988888877643 469999999999999999999999988855
Q ss_pred cCC
Q 019482 318 TVP 320 (340)
Q Consensus 318 ~~~ 320 (340)
...
T Consensus 309 ~~k 311 (487)
T KOG0310|consen 309 EVK 311 (487)
T ss_pred hcc
Confidence 433
No 46
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-35 Score=216.95 Aligned_cols=295 Identities=13% Similarity=0.132 Sum_probs=231.2
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCC-CeEEEEe
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCST 82 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~ 82 (340)
+..=+++.|+|-.+....+|.+...+. ...+++.|.+.+ ... ...+..--.-.+.+..++|++.. +.+++++
T Consensus 8 gf~GysvqfSPf~~nrLavAt~q~yGl-~G~G~L~ile~~-~~~-----gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~ 80 (311)
T KOG0277|consen 8 GFHGYSVQFSPFVENRLAVATAQHYGL-AGNGRLFILEVT-DPK-----GIQECQSYDTEDGLFDVAWSENHENQVIAAS 80 (311)
T ss_pred CcccceeEecccccchhheeehhhccc-ccCceEEEEecC-CCC-----CeEEEEeeecccceeEeeecCCCcceEEEEe
Confidence 344578999996666666666666553 245667777765 111 12222222346779999999854 5788999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEE
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~ 161 (340)
.||++++||+........... +|..+|.++.|++ +++.+++++-|++|++|+....+.+.++.+|..-|....
T Consensus 81 GDGSLrl~d~~~~s~Pi~~~k------EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~ 154 (311)
T KOG0277|consen 81 GDGSLRLFDLTMPSKPIHKFK------EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAA 154 (311)
T ss_pred cCceEEEeccCCCCcchhHHH------hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEe
Confidence 999999999654433222211 3889999999999 566788889999999999999999999999999999999
Q ss_pred ecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc-EEee
Q 019482 162 FSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGH 239 (340)
Q Consensus 162 ~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~ 239 (340)
|+| ..+.++++|.|+++++||++.......+.. |...+.++.|+.-...+ +++++.|+.|+.||+++.+ ++.+
T Consensus 155 ~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a-h~~Eil~cdw~ky~~~v----l~Tg~vd~~vr~wDir~~r~pl~e 229 (311)
T KOG0277|consen 155 FSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA-HNSEILCCDWSKYNHNV----LATGGVDNLVRGWDIRNLRTPLFE 229 (311)
T ss_pred cCCCCCCeEEEccCCceEEEEEecCCCceeEEEe-ccceeEeecccccCCcE----EEecCCCceEEEEehhhcccccee
Confidence 999 788999999999999999987544444554 44679999999877764 7999999999999999765 6778
Q ss_pred eeccCCCeeEEEECCC-CCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEec-CCeEEEEEecCCcEEEEEe
Q 019482 240 KRLLRKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP-TQRVVLTASKEWGAMITKL 317 (340)
Q Consensus 240 ~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iw~~ 317 (340)
+.+|+-.|+.++|||. ...|++++.|-+++|||...+.-.......| ..-+..+.|++ +..++|+++.|+.++||+-
T Consensus 230 L~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H-tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 230 LNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH-TEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc-ceEEeccccccccCceeeecccccceeeecc
Confidence 8899999999999995 5789999999999999998665544443344 67899999998 5679999999999999973
No 47
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=3.6e-35 Score=255.85 Aligned_cols=308 Identities=15% Similarity=0.137 Sum_probs=245.0
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCccc----CCeeeEEEecCCCCeeEEEEcCCCCeEE
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT----SPLVTYVFDESEGDPMTIAVNPSGDDFV 79 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 79 (340)
+.+|++++-+| ++..+|+|| -+.|+.+.||+.++-...... -+....+...|.+.|+|+.|+|||++||
T Consensus 13 ~~~IfSIdv~p---dg~~~aTgG----q~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lA 85 (942)
T KOG0973|consen 13 EKSIFSIDVHP---DGVKFATGG----QVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLA 85 (942)
T ss_pred CeeEEEEEecC---CceeEecCC----ccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEe
Confidence 46699999999 556677777 335666789998754422211 2445567788999999999999999999
Q ss_pred EEecCCCEEEEEecCc----ee-------eeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceee
Q 019482 80 CSTTNGGCKLFEVYGG----AT-------DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL 148 (340)
Q Consensus 80 ~~~~d~~i~iw~~~~~----~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 148 (340)
+|++|+.|.||..... .. ..+-.........|.+.|..++|+|++.+|++++.|++|.+||..+.+.+.
T Consensus 86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK 165 (942)
T ss_pred eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee
Confidence 9999999999998731 00 000000001112388999999999999999999999999999999999999
Q ss_pred ccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCC-----CceeeEEEccCCCcceEEEEEecCCc
Q 019482 149 DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD-----EKIELCRFSKDGTKPFLFCTVQRGDK 223 (340)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~d 223 (340)
.+.+|+..|..+.|.|-|++|++-+.|++|++|++.+-...+.+..+.+ ..+..+.|||||+++... .+..+.-
T Consensus 166 vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~-nA~n~~~ 244 (942)
T KOG0973|consen 166 VLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP-NAVNGGK 244 (942)
T ss_pred eeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecch-hhccCCc
Confidence 9999999999999999999999999999999999877666665543332 357889999999973221 1233455
Q ss_pred ceEEEEECCCCcEEeeeeccCCCeeEEEECCC-----CC------------EEEEeeCCCcEEEEeccCceEeecccccc
Q 019482 224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLD-----GK------------YLAMGSKDGDICVVDVKKMEINHWSKRLH 286 (340)
Q Consensus 224 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~-----~~------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 286 (340)
..+.|.+-.+++.-..+.+|..++.++.|+|. .+ .+|+|+.|++|.||.....+++.......
T Consensus 245 ~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf 324 (942)
T KOG0973|consen 245 STIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLF 324 (942)
T ss_pred ceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhh
Confidence 68999999999988899999999999999982 12 67889999999999998888776665444
Q ss_pred cccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482 287 LGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 287 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
...|..++|+|||..|+.+|.||+|.+..++..
T Consensus 325 -~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 325 -NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred -cCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 579999999999999999999999999999754
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-35 Score=242.88 Aligned_cols=249 Identities=12% Similarity=0.147 Sum_probs=223.0
Q ss_pred EecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEE
Q 019482 59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI 138 (340)
Q Consensus 59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 138 (340)
+..|...|.++.|+|....++++-.+|.|.|||.++......+.. ..-||++..|-+..+++++|+.|..|++
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV-------~~~PvRa~kfiaRknWiv~GsDD~~IrV 81 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV-------SEVPVRAAKFIARKNWIVTGSDDMQIRV 81 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee-------cccchhhheeeeccceEEEecCCceEEE
Confidence 445889999999999999999999999999999999887766644 3468999999999999999999999999
Q ss_pred EeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEE
Q 019482 139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218 (340)
Q Consensus 139 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 218 (340)
|+..+++.+..+..|.+-|.+++.+|...+++++|.|-+|++||-+.+-...+...+|...|.+++|.|....- ++
T Consensus 82 fnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~nt----Fa 157 (794)
T KOG0276|consen 82 FNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNT----FA 157 (794)
T ss_pred EecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccc----ee
Confidence 99999999999999999999999999999999999999999999987644444444566789999999976653 68
Q ss_pred ecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCC--CCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEE
Q 019482 219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD--GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF 296 (340)
Q Consensus 219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~ 296 (340)
+++-|++|++|.+.+..+..++.+|...|+++.+-+. ..+|++|++|..++|||.++..+++.+ .+| ...|..+.|
T Consensus 158 S~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL-eGH-t~Nvs~v~f 235 (794)
T KOG0276|consen 158 SASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL-EGH-TNNVSFVFF 235 (794)
T ss_pred eeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh-hcc-cccceEEEe
Confidence 8999999999999999999999999999999999874 479999999999999999999999888 477 578999999
Q ss_pred ecCCeEEEEEecCCcEEEEEecCC
Q 019482 297 CPTQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 297 ~~~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
+|.-..+++||.||+++||+-..-
T Consensus 236 hp~lpiiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 236 HPELPIIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred cCCCcEEEEecCCccEEEecCcce
Confidence 999999999999999999987543
No 49
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.4e-36 Score=228.02 Aligned_cols=291 Identities=13% Similarity=0.175 Sum_probs=243.4
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
+..+-|..|+| +++++++|+ .|+-|++|++....-.-.......-.+--|..+|.|+.|+.|...+|+|+.
T Consensus 213 KSh~EcA~FSP---DgqyLvsgS------vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsq 283 (508)
T KOG0275|consen 213 KSHVECARFSP---DGQYLVSGS------VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQ 283 (508)
T ss_pred ccchhheeeCC---CCceEeecc------ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCc
Confidence 35577999999 677888777 677799999973321111112222334558899999999999999999999
Q ss_pred CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEec
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~ 163 (340)
||.|++|.+.++.+..++.. .|...|+|+.|+.|+..+++++.|.++++--+.+|+++..+.+|..-|+...|.
T Consensus 284 DGkIKvWri~tG~ClRrFdr------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft 357 (508)
T KOG0275|consen 284 DGKIKVWRIETGQCLRRFDR------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT 357 (508)
T ss_pred CCcEEEEEEecchHHHHhhh------hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEc
Confidence 99999999999998877753 378899999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeeCCCeEEEEEccCCeeEEEeecC-CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec
Q 019482 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (340)
Q Consensus 164 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 242 (340)
+||..+++++.||+|++|+.++.+++.+++.. .+.+|.++-.-|.+... ++.+...+++.+.++. |+.++.+..
T Consensus 358 ~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh----~iVCNrsntv~imn~q-GQvVrsfsS 432 (508)
T KOG0275|consen 358 DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEH----FIVCNRSNTVYIMNMQ-GQVVRSFSS 432 (508)
T ss_pred CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCce----EEEEcCCCeEEEEecc-ceEEeeecc
Confidence 99999999999999999999999999988743 34578888888876654 5667788889999886 555555543
Q ss_pred c---CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482 243 L---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK 316 (340)
Q Consensus 243 ~---~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~ 316 (340)
. .+...+..+||.|.++++.++|+.++.|...+|+..+.+. .| ...+..++-+|-.+.||+-+.||.+++|.
T Consensus 433 GkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~-Vh-EkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 433 GKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP-VH-EKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeee-cc-cccccccccCcccchhhhhcccchhhhcC
Confidence 2 3556677899999999999999999999999999888774 56 46788999999999999999999999995
No 50
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.7e-35 Score=248.01 Aligned_cols=258 Identities=17% Similarity=0.179 Sum_probs=208.4
Q ss_pred eeEEEe-cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCcee---------------------------e--------
Q 019482 55 VTYVFD-ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT---------------------------D-------- 98 (340)
Q Consensus 55 ~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~---------------------------~-------- 98 (340)
....+. .|.+.|.++.|++||+|||+|+.|+.|+||.+...+. .
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 344566 8999999999999999999999999999999876100 0
Q ss_pred ---------eeecc--------cc-CCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEE
Q 019482 99 ---------INLLA--------KK-MPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (340)
Q Consensus 99 ---------~~~~~--------~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~ 160 (340)
..... .+ .....|.+.|.++.||.++ +|++++.|.+|++|++...+++..+ .|.+-|+|+
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcV 415 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCV 415 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE-ecCCeeEEE
Confidence 00000 00 0112478899999999765 8999999999999999988887655 788999999
Q ss_pred EecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee
Q 019482 161 DFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (340)
Q Consensus 161 ~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~ 239 (340)
+|+| |.++|++|+-|+.|+||++...+.+.-... ...|++++|.|||+. .+.|+.+|.+++|++...+....
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl--~~lITAvcy~PdGk~-----avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL--RDLITAVCYSPDGKG-----AVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeEeehhh--hhhheeEEeccCCce-----EEEEEeccEEEEEEccCCeEEEe
Confidence 9999 899999999999999999987776554432 357999999999998 88999999999999998776544
Q ss_pred eecc--------CCCeeEEEECCC-CCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCC
Q 019482 240 KRLL--------RKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW 310 (340)
Q Consensus 240 ~~~~--------~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 310 (340)
...+ ...|+.+.|.|. ...+++.+.|..|+|||.++.+++..++..+....-....|+.||++|+++++|.
T Consensus 489 ~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs 568 (712)
T KOG0283|consen 489 FHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS 568 (712)
T ss_pred eeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCc
Confidence 3221 236999999984 4468888899999999999988888887555455667889999999999999999
Q ss_pred cEEEEEecCCC
Q 019482 311 GAMITKLTVPA 321 (340)
Q Consensus 311 ~i~iw~~~~~~ 321 (340)
.|+||+++.+.
T Consensus 569 ~VYiW~~~~~~ 579 (712)
T KOG0283|consen 569 WVYIWKNDSFN 579 (712)
T ss_pred eEEEEeCCCCc
Confidence 99999986544
No 51
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=4.8e-35 Score=222.02 Aligned_cols=297 Identities=13% Similarity=0.240 Sum_probs=243.9
Q ss_pred CCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCC-----CCCc-----ccCCeeeEEEecCCCCeeEEEE
Q 019482 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPK-----TTSV-----YTSPLVTYVFDESEGDPMTIAV 71 (340)
Q Consensus 2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~-----~~~~-----~~~~~~~~~~~~h~~~v~~~~~ 71 (340)
+++.|+.|.+|++ ++.|+|.|+ .|..|+|++.+.. .... ........+|-.|.++|+++.|
T Consensus 110 ~HK~~cR~aafs~---DG~lvATGs------aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F 180 (430)
T KOG0640|consen 110 SHKSPCRAAAFSP---DGSLVATGS------ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF 180 (430)
T ss_pred ecccceeeeeeCC---CCcEEEccC------CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee
Confidence 4678999999999 678999887 5556999988721 1111 1112345678889999999999
Q ss_pred cCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeecc-
Q 019482 72 NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE- 150 (340)
Q Consensus 72 ~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~- 150 (340)
+|....|++++.|++|+++|+........+ ..++...+|.++.|+|.|.+|++|....++++||+++-++...-
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~-----K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan 255 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAF-----KVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN 255 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHH-----HHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC
Confidence 999999999999999999999765432222 22346679999999999999999999999999999998765443
Q ss_pred --ccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCC-CCceeeEEEccCCCcceEEEEEecCCcceEE
Q 019482 151 --PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227 (340)
Q Consensus 151 --~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~ 227 (340)
.+|.+.|+++.+++.+++.++++.||.|++||--+++++.++...| ...|.+..|..++++ +++++.|..++
T Consensus 256 Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ky-----iLsSG~DS~vk 330 (430)
T KOG0640|consen 256 PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKY-----ILSSGKDSTVK 330 (430)
T ss_pred cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeE-----EeecCCcceee
Confidence 3456689999999999999999999999999999999998887555 457999999999998 89999999999
Q ss_pred EEECCCCcEEeeeeccC-----CCeeEEEECCCCCEEEEeeC-CCcEEEEeccCceEeecccccccccceeeEEEecCCe
Q 019482 228 VYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (340)
Q Consensus 228 i~d~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 301 (340)
+|.+.+++++..+.+.. .--+...|+....|++.-.+ .+.+.-||.++......+..+| .+.++.+.-||.+.
T Consensus 331 LWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgH-n~a~R~i~HSP~~p 409 (430)
T KOG0640|consen 331 LWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGH-NGAVRWIVHSPVEP 409 (430)
T ss_pred eeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCC-CCCceEEEeCCCCC
Confidence 99999999998887653 12244567777778777654 5789999999998888887788 68999999999999
Q ss_pred EEEEEecCCcEEEEEec
Q 019482 302 VVLTASKEWGAMITKLT 318 (340)
Q Consensus 302 ~l~~~~~dg~i~iw~~~ 318 (340)
-+++|+.|-.+++|.-.
T Consensus 410 ~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 410 AFMTCSDDFRARFWYRR 426 (430)
T ss_pred ceeeecccceeeeeeec
Confidence 99999999999999653
No 52
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.4e-36 Score=233.69 Aligned_cols=250 Identities=14% Similarity=0.181 Sum_probs=210.6
Q ss_pred CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 142 (340)
.+.|+|+.+ |...+++|..|.+|+|||..+..+...+.+ |.+.|.|+.|. .+.|++|+.|.+|++||++
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~G-------HtGSVLCLqyd--~rviisGSSDsTvrvWDv~ 265 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTG-------HTGSVLCLQYD--ERVIVSGSSDSTVRVWDVN 265 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhc-------CCCcEEeeecc--ceEEEecCCCceEEEEecc
Confidence 456999999 566899999999999999988877666554 88999999994 5699999999999999999
Q ss_pred CCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeE--EEeecCCCCceeeEEEccCCCcceEEEEEec
Q 019482 143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW--TFLTRNSDEKIELCRFSKDGTKPFLFCTVQR 220 (340)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 220 (340)
+++++..+..|.+.|..+.|+ +.++++++.|.++.+||+.....+ .....+|...|+.+.|+.. + ++++
T Consensus 266 tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k--y-----IVsA 336 (499)
T KOG0281|consen 266 TGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--Y-----IVSA 336 (499)
T ss_pred CCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc--e-----EEEe
Confidence 999999999999999999998 679999999999999999865432 1122355678999999654 5 7999
Q ss_pred CCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCC
Q 019482 221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300 (340)
Q Consensus 221 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 300 (340)
+.|.+|++|++.+++.+..+.+|...|.|+.+ .++++++|+.|.+|++||+..|.+++.+ .+| +.-|.++.|. .
T Consensus 337 SgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvL-eGH-EeLvRciRFd--~ 410 (499)
T KOG0281|consen 337 SGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL-EGH-EELVRCIRFD--N 410 (499)
T ss_pred cCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHH-hch-HHhhhheeec--C
Confidence 99999999999999999999999999988876 6899999999999999999999999887 477 5789999995 5
Q ss_pred eEEEEEecCCcEEEEEecCCCCCC------CCcccccccccccc
Q 019482 301 RVVLTASKEWGAMITKLTVPADWK------GLSLPLLHSHSQNS 338 (340)
Q Consensus 301 ~~l~~~~~dg~i~iw~~~~~~~~~------~~~~~~~h~~~v~~ 338 (340)
+.+++|+.||+|+||++...-++. .+.....|++.|..
T Consensus 411 krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFr 454 (499)
T KOG0281|consen 411 KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFR 454 (499)
T ss_pred ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEE
Confidence 789999999999999998654431 22334556666543
No 53
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.7e-36 Score=242.19 Aligned_cols=267 Identities=16% Similarity=0.157 Sum_probs=220.6
Q ss_pred CeeeEEEecCCCCeeEEEEcC-CCCeEEEEecCCCEEEEEecC-ceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEc
Q 019482 53 PLVTYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG 130 (340)
Q Consensus 53 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 130 (340)
....+.+.||+..|.++.|.| .+.+|++++.|+.|+||++.. +.+...+.. |..+|.+++|+++|..|+++
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g-------H~k~Vrd~~~s~~g~~fLS~ 276 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG-------HRKPVRDASFNNCGTSFLSA 276 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc-------chhhhhhhhccccCCeeeee
Confidence 345678999999999999999 889999999999999999987 555555543 88999999999999999999
Q ss_pred cCCCcEEEEeCCCCceeeccccCccceeEEEecCCC-CeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCC
Q 019482 131 GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209 (340)
Q Consensus 131 ~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (340)
+.|+.|++||+++|++...+.. ...++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+.. +-+.|..+.|-++|
T Consensus 277 sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~-hLg~i~~i~F~~~g 354 (503)
T KOG0282|consen 277 SFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR-HLGAILDITFVDEG 354 (503)
T ss_pred ecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh-hhhheeeeEEccCC
Confidence 9999999999999999887743 4578999999987 7899999999999999999998888764 45689999999999
Q ss_pred CcceEEEEEecCCcceEEEEECCCCcEEeeee-ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEee--cccccc
Q 019482 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH--WSKRLH 286 (340)
Q Consensus 210 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~ 286 (340)
++ ++++++|+.+++|+.+.+-+++... .......++..+|++++++.-+.|+.|.+|.+...-... ....+|
T Consensus 355 ~r-----FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh 429 (503)
T KOG0282|consen 355 RR-----FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGH 429 (503)
T ss_pred ce-----EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcce
Confidence 98 7999999999999999887664433 233567889999999999999999999999875432221 122333
Q ss_pred c-ccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCcccccccccc
Q 019482 287 L-GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQ 336 (340)
Q Consensus 287 ~-~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v 336 (340)
. .+.-..+.|||||++|++|+.||.+.+|+++.-+. +.....|...+
T Consensus 430 ~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl---~~~lkah~~~c 477 (503)
T KOG0282|consen 430 SVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKL---VSKLKAHDQPC 477 (503)
T ss_pred eccCceeeEEEcCCCCeEEeecCCccEEEeechhhhh---hhccccCCcce
Confidence 2 24567899999999999999999999999976553 44455554333
No 54
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-34 Score=209.63 Aligned_cols=277 Identities=16% Similarity=0.183 Sum_probs=232.9
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
++++|.++.|+-+ +++.+..+ ++.++++|+.- ...+..++.+|..+|..++.+.|...|++++
T Consensus 16 ~qgaV~avryN~d---GnY~ltcG------sdrtvrLWNp~--------rg~liktYsghG~EVlD~~~s~Dnskf~s~G 78 (307)
T KOG0316|consen 16 AQGAVRAVRYNVD---GNYCLTCG------SDRTVRLWNPL--------RGALIKTYSGHGHEVLDAALSSDNSKFASCG 78 (307)
T ss_pred cccceEEEEEccC---CCEEEEcC------CCceEEeeccc--------ccceeeeecCCCceeeeccccccccccccCC
Confidence 4689999999994 44555444 67779999865 5667788999999999999999999999999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC--ceeeccccCccceeEE
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL--RIILDEPKAHKSVLDM 160 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~--~~~~~~~~~~~~i~~~ 160 (340)
.|..+.+||+.+++...++.. |.+.|+.++|+.+...+++|+.|..+++||.++. ++++.+....+.|.++
T Consensus 79 gDk~v~vwDV~TGkv~Rr~rg-------H~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si 151 (307)
T KOG0316|consen 79 GDKAVQVWDVNTGKVDRRFRG-------HLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSI 151 (307)
T ss_pred CCceEEEEEcccCeeeeeccc-------ccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEE
Confidence 999999999999999888765 8899999999999999999999999999998754 5677777777899999
Q ss_pred EecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee
Q 019482 161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (340)
Q Consensus 161 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 240 (340)
..+ +..|++|+.||+++.||++.|+...... ..+|+++.|+++++. .+.++.|+++++.|-.+|+.+..+
T Consensus 152 ~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~---g~pit~vs~s~d~nc-----~La~~l~stlrLlDk~tGklL~sY 221 (307)
T KOG0316|consen 152 DVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF---GHPITSVSFSKDGNC-----SLASSLDSTLRLLDKETGKLLKSY 221 (307)
T ss_pred Eec--ccEEEeeccCCcEEEEEeecceeehhhc---CCcceeEEecCCCCE-----EEEeeccceeeecccchhHHHHHh
Confidence 887 6789999999999999999998766554 457999999999996 788899999999999999999999
Q ss_pred eccCCCee--EEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccc-eeeEEEecCCeEEEEEecCCcEEEEE
Q 019482 241 RLLRKPAS--VLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS-IALVEFCPTQRVVLTASKEWGAMITK 316 (340)
Q Consensus 241 ~~~~~~i~--~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg~i~iw~ 316 (340)
++|...-. ..+++.....+++|++||.+++||+.....+..+.. + ... +.+++++|....++++... .+..|.
T Consensus 222 kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~-~-~~v~v~dl~~hp~~~~f~~A~~~-~~~~~~ 297 (307)
T KOG0316|consen 222 KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV-V-STVIVTDLSCHPTMDDFITATGH-GDLFWY 297 (307)
T ss_pred cccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc-C-CceeEEeeecccCccceeEecCC-ceecee
Confidence 99875433 345666778999999999999999999888877643 3 344 8999999988777777544 445554
No 55
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=6.1e-34 Score=262.34 Aligned_cols=252 Identities=18% Similarity=0.217 Sum_probs=206.3
Q ss_pred EecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEE
Q 019482 59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLR 137 (340)
Q Consensus 59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 137 (340)
+..|.+.|.+++|+|+|++||+|+.|+.|+||+...................+...+.+++|++ ++.+|++++.||+|+
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 4458999999999999999999999999999997542110000000001112456789999988 578999999999999
Q ss_pred EEeCCCCceeeccccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEcc-CCCcceEE
Q 019482 138 IMHWPSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK-DGTKPFLF 215 (340)
Q Consensus 138 ~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~ 215 (340)
+||+.+++.+..+..|...|.+++|+| ++.+|++|+.|++|++||+++++.+..+..+ ..+.++.|++ ++..
T Consensus 559 lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~--~~v~~v~~~~~~g~~---- 632 (793)
T PLN00181 559 VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK--ANICCVQFPSESGRS---- 632 (793)
T ss_pred EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC--CCeEEEEEeCCCCCE----
Confidence 999999988888888889999999997 7889999999999999999999888887632 4689999964 5665
Q ss_pred EEEecCCcceEEEEECCCCc-EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCc------eEeecccccccc
Q 019482 216 CTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM------EINHWSKRLHLG 288 (340)
Q Consensus 216 ~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~ 288 (340)
+++++.|+.|++||+++.+ .+..+..|...|.++.|. ++.+|++++.|+.|++||+... .++..+ .+| .
T Consensus 633 -latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~-~gh-~ 708 (793)
T PLN00181 633 -LAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF-MGH-T 708 (793)
T ss_pred -EEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE-cCC-C
Confidence 7889999999999998865 456678899999999997 6889999999999999999753 334433 355 5
Q ss_pred cceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482 289 TSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 289 ~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
..+..++|+|++++|++|+.|+.+++|+...+
T Consensus 709 ~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 709 NVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 68899999999999999999999999997644
No 56
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-34 Score=226.35 Aligned_cols=271 Identities=17% Similarity=0.141 Sum_probs=221.2
Q ss_pred eeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC
Q 019482 55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (340)
Q Consensus 55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 134 (340)
....+..|.++|.-+.||++|++||+++.|.+..+|.+.......-. .....|..+|.-+.||||.++|++++.|.
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~----~tlvgh~~~V~yi~wSPDdryLlaCg~~e 291 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLK----KTLVGHSQPVSYIMWSPDDRYLLACGFDE 291 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeee----eeeecccCceEEEEECCCCCeEEecCchH
Confidence 34567889999999999999999999999999999998765442111 11235889999999999999999999999
Q ss_pred cEEEEeCCCCceeeccccCc-cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcce
Q 019482 135 HLRIMHWPSLRIILDEPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213 (340)
Q Consensus 135 ~i~~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (340)
.+.+||+.+|.....+.... ..+.+++|.|||..+++|+.|+++..||++ |..+..+.+.....|.+++.++||++
T Consensus 292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~-- 368 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKY-- 368 (519)
T ss_pred heeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcE--
Confidence 99999999999887665543 478999999999999999999999999986 55566666555567999999999998
Q ss_pred EEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccc-cccee
Q 019482 214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL-GTSIA 292 (340)
Q Consensus 214 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~i~ 292 (340)
++..+.|..|++|+..+..... +.....+|++++.|.|++++++--.+..+++||++....++.+. +|. +.-+.
T Consensus 369 ---vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~-Ghkq~~fiI 443 (519)
T KOG0293|consen 369 ---VLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF-GHKQGHFII 443 (519)
T ss_pred ---EEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh-cccccceEE
Confidence 5666689999999988755433 33445689999999999999999999999999999777776663 443 23445
Q ss_pred eEEEec-CCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccCC
Q 019482 293 LVEFCP-TQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSVS 340 (340)
Q Consensus 293 ~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~vs 340 (340)
.-+|-- +..++++||+|+.|+||+....+ ++....+|...||.||
T Consensus 444 rSCFgg~~~~fiaSGSED~kvyIWhr~sgk---ll~~LsGHs~~vNcVs 489 (519)
T KOG0293|consen 444 RSCFGGGNDKFIASGSEDSKVYIWHRISGK---LLAVLSGHSKTVNCVS 489 (519)
T ss_pred EeccCCCCcceEEecCCCceEEEEEccCCc---eeEeecCCcceeeEEe
Confidence 555654 55899999999999999986444 6888899999998875
No 57
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-33 Score=230.34 Aligned_cols=264 Identities=14% Similarity=0.140 Sum_probs=218.8
Q ss_pred ceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCe
Q 019482 36 VLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQ 115 (340)
Q Consensus 36 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v 115 (340)
.+.+|+... ........-+.+.|+++.|+++|.+|++|..+|.|.|||....+....+.. .|...|
T Consensus 198 ~vylW~~~s--------~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~------~h~~rv 263 (484)
T KOG0305|consen 198 SVYLWSASS--------GSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG------SHASRV 263 (484)
T ss_pred eEEEEecCC--------CceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC------CcCcee
Confidence 478887652 222222333478999999999999999999999999999988776555432 277899
Q ss_pred EEEEEecCCCeEEEccCCCcEEEEeCCCCceeec-cccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeec
Q 019482 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR 194 (340)
Q Consensus 116 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~ 194 (340)
-+++|+ +..+.+|+.|+.|..+|++..+.... +.+|...|..++|++|++++|+|+.|+.+.|||....+++..+..
T Consensus 264 g~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~ 341 (484)
T KOG0305|consen 264 GSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTE 341 (484)
T ss_pred EEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEec
Confidence 999998 66899999999999999998876655 666778999999999999999999999999999988888877764
Q ss_pred CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEe--eCCCcEEEEe
Q 019482 195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG--SKDGDICVVD 272 (340)
Q Consensus 195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~~dg~i~i~d 272 (340)
|.+.|..++|+|-...+ ++...|+.|+.|++||..+++.+..... ...|.++.|++..+.|+++ ..++.|.||+
T Consensus 342 -H~aAVKA~awcP~q~~l--LAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~ 417 (484)
T KOG0305|consen 342 -HTAAVKALAWCPWQSGL--LATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWK 417 (484)
T ss_pred -cceeeeEeeeCCCccCc--eEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEe
Confidence 55789999999987753 2234455799999999999998866554 4589999999999888775 4567899999
Q ss_pred ccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 273 VKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
..+.+.+..+ .+| ...|..++++|||..+++|+.|.++++|++-...
T Consensus 418 ~ps~~~~~~l-~gH-~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 418 YPSMKLVAEL-LGH-TSRVLYLALSPDGETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred ccccceeeee-cCC-cceeEEEEECCCCCEEEEecccCcEEeccccCCC
Confidence 9998887766 577 6789999999999999999999999999997643
No 58
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=6.8e-34 Score=210.62 Aligned_cols=250 Identities=12% Similarity=0.143 Sum_probs=212.2
Q ss_pred EEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCc
Q 019482 57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGH 135 (340)
Q Consensus 57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~ 135 (340)
..+++|...|.+++|+.+|..|++|+.|+++.+|+++..+....... ..|.+.|-.++|+| ...++++++.|.+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~-----~gh~~svdql~w~~~~~d~~atas~dk~ 88 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVY-----RGHTDSVDQLCWDPKHPDLFATASGDKT 88 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcc-----cCCCcchhhheeCCCCCcceEEecCCce
Confidence 56788999999999999999999999999999999987754333322 24778899999998 5679999999999
Q ss_pred EEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEE
Q 019482 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (340)
Q Consensus 136 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (340)
|++||++.+++........+.+ -+.|+|+|++++.++.|..|.+.|.++.+.....+.. ..+..+.|+.++..
T Consensus 89 ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~--~e~ne~~w~~~nd~---- 161 (313)
T KOG1407|consen 89 IRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK--FEVNEISWNNSNDL---- 161 (313)
T ss_pred EEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhccc--ceeeeeeecCCCCE----
Confidence 9999999999988776555555 4889999999999999999999999998887766533 34788999966664
Q ss_pred EEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEE
Q 019482 216 CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVE 295 (340)
Q Consensus 216 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~ 295 (340)
++.....|.|.|......+++..+..|.....++.|+|+|+++|+|+.|-.+.+||+...-+++.+.. + .-+|+.++
T Consensus 162 -Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR-l-dwpVRTlS 238 (313)
T KOG1407|consen 162 -FFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR-L-DWPVRTLS 238 (313)
T ss_pred -EEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc-c-cCceEEEE
Confidence 34445568999999999999999999999999999999999999999999999999998887777643 3 57999999
Q ss_pred EecCCeEEEEEecCCcEEEEEecCCC
Q 019482 296 FCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 296 ~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
|+.||++||++|+|..|-|=+++...
T Consensus 239 FS~dg~~lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 239 FSHDGRMLASASEDHFIDIAEVETGD 264 (313)
T ss_pred eccCcceeeccCccceEEeEecccCC
Confidence 99999999999999888766665544
No 59
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.4e-32 Score=197.41 Aligned_cols=299 Identities=15% Similarity=0.184 Sum_probs=232.8
Q ss_pred CCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCC-----Cccc-CCe-eeEEEecCCCCeeEEEEcCC
Q 019482 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTT-----SVYT-SPL-VTYVFDESEGDPMTIAVNPS 74 (340)
Q Consensus 2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~-----~~~~-~~~-~~~~~~~h~~~v~~~~~~~~ 74 (340)
|....|.+++|.| .+.+.+.|+... ++++..+..-.. .... .|. ....-+.|.+.|+|.+|+|+
T Consensus 30 ~dsqairav~fhp---~g~lyavgsnsk------t~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 30 EDSQAIRAVAFHP---AGGLYAVGSNSK------TFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred cchhheeeEEecC---CCceEEeccCCc------eEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence 4566789999999 456777777544 477776642111 1111 222 23345678999999999999
Q ss_pred CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC----CCeEEEcc-CCCcEEEEeCCCCceeec
Q 019482 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD----GSRFAAGG-VDGHLRIMHWPSLRIILD 149 (340)
Q Consensus 75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~dg~i~~~d~~~~~~~~~ 149 (340)
|++|++|+.|.+|++..++...+. .........-|.+.|..++|..+ +..|++++ .|..|++-|..+++....
T Consensus 101 geliatgsndk~ik~l~fn~dt~~--~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a 178 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCN--ATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA 178 (350)
T ss_pred cCeEEecCCCceEEEEeccccccc--ccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence 999999999999999887655432 22222223348899999999764 34666654 466788888889999999
Q ss_pred cccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecC------CCCceeeEEEccCCCcceEEEEEecCCc
Q 019482 150 EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN------SDEKIELCRFSKDGTKPFLFCTVQRGDK 223 (340)
Q Consensus 150 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~d 223 (340)
+.+|.+.|.++ ++-++-++++|+.|.+|++||++-..++.++... ....|.+++..|.|+. ++++..|
T Consensus 179 ~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl-----l~sg~~d 252 (350)
T KOG0641|consen 179 LSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL-----LASGHAD 252 (350)
T ss_pred ecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce-----eeeccCC
Confidence 99999888765 3445889999999999999999998888777521 1246899999999997 7889999
Q ss_pred ceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCc---eEeecccccccccceeeEEEecCC
Q 019482 224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM---EINHWSKRLHLGTSIALVEFCPTQ 300 (340)
Q Consensus 224 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~i~~~~~~~~~ 300 (340)
....+||++.+++++.+..|...|.++.|+|...|+++++.|..|++-|++.. +........| ...+..+.|+|..
T Consensus 253 ssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh-kdk~i~~rwh~~d 331 (350)
T KOG0641|consen 253 SSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH-KDKAIQCRWHPQD 331 (350)
T ss_pred CceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec-cCceEEEEecCcc
Confidence 99999999999999999999999999999999999999999999999999752 2222222345 5688899999999
Q ss_pred eEEEEEecCCcEEEEEec
Q 019482 301 RVVLTASKEWGAMITKLT 318 (340)
Q Consensus 301 ~~l~~~~~dg~i~iw~~~ 318 (340)
--+++.+.|.++.+|.++
T Consensus 332 ~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 332 FSFISSSADKTATLWALN 349 (350)
T ss_pred ceeeeccCcceEEEeccC
Confidence 899999999999999874
No 60
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=5.8e-33 Score=215.82 Aligned_cols=264 Identities=16% Similarity=0.131 Sum_probs=219.2
Q ss_pred cCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCC---CeEEEEecCCCEEEEEecCceeeeeeccccCCC
Q 019482 32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG---DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP 108 (340)
Q Consensus 32 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 108 (340)
..|+.+++|+.. .....++.||.++|.+++|.-.. ..|++++.|.++++|..+.++.........
T Consensus 122 sYDg~~riWd~~---------Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~--- 189 (423)
T KOG0313|consen 122 SYDGTSRIWDLK---------GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVC--- 189 (423)
T ss_pred ecCCeeEEEecC---------CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHh---
Confidence 367779999875 44557789999999999885433 369999999999999998876544333221
Q ss_pred CCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC-------------------------CceeeccccCccceeEEEec
Q 019482 109 LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-------------------------LRIILDEPKAHKSVLDMDFS 163 (340)
Q Consensus 109 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------------~~~~~~~~~~~~~i~~~~~~ 163 (340)
..|...|.++...++|..+++|+.|..|.+|+.++ +.++..+.+|.++|.++.|+
T Consensus 190 ~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~ 269 (423)
T KOG0313|consen 190 RGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWS 269 (423)
T ss_pred cccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEc
Confidence 15999999999999999999999999999999321 12344567888899999999
Q ss_pred CCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc---EEeee
Q 019482 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN---KIGHK 240 (340)
Q Consensus 164 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~---~~~~~ 240 (340)
+ ...+++++.|.+|+.||+.+++.+.++... ..+.++..+|.... +++++.|..|++||.+++. ....+
T Consensus 270 d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~--ksl~~i~~~~~~~L-----l~~gssdr~irl~DPR~~~gs~v~~s~ 341 (423)
T KOG0313|consen 270 D-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN--KSLNCISYSPLSKL-----LASGSSDRHIRLWDPRTGDGSVVSQSL 341 (423)
T ss_pred C-CCceEeecccceEEEEEeecccceeeeecC--cceeEeecccccce-----eeecCCCCceeecCCCCCCCceeEEee
Confidence 8 668999999999999999999999888744 46999999998876 8999999999999999875 45678
Q ss_pred eccCCCeeEEEECCCC-CEEEEeeCCCcEEEEeccCce-EeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 241 RLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKME-INHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 241 ~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
.+|...|.++.|+|.. ..|++|+.|+++++||+++.+ ++..+ ..| ...|.++.|+. +..|++||.|++++|+.-.
T Consensus 342 ~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI-~~h-~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 342 IGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI-AGH-NDKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee-ccC-CceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 8999999999999954 668889999999999999987 66555 466 68999999974 6689999999999998753
No 61
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.2e-34 Score=243.00 Aligned_cols=249 Identities=16% Similarity=0.200 Sum_probs=219.9
Q ss_pred ecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEE
Q 019482 60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (340)
Q Consensus 60 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 139 (340)
+.....|..++|+|....++++-.+|.|++||.+-+..+.++. +|.++|+.+.|+|++.++++|+.|-.|++|
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFd-------eHdGpVRgv~FH~~qplFVSGGDDykIkVW 78 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFD-------EHDGPVRGVDFHPTQPLFVSGGDDYKIKVW 78 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhh-------ccCCccceeeecCCCCeEEecCCccEEEEE
Confidence 3456779999999999999999999999999999888776664 389999999999999999999999999999
Q ss_pred eCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEe
Q 019482 140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (340)
Q Consensus 140 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 219 (340)
+..+.+++.++.+|-+-|..+.|++.-.+++++|.|.+|+||+..+++++..+.+ |...|.|.+|+|.... +++
T Consensus 79 nYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltG-HnHYVMcAqFhptEDl-----IVS 152 (1202)
T KOG0292|consen 79 NYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTG-HNHYVMCAQFHPTEDL-----IVS 152 (1202)
T ss_pred ecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEec-CceEEEeeccCCccce-----EEE
Confidence 9999999999999999999999999999999999999999999999999999985 4568999999998776 899
Q ss_pred cCCcceEEEEECCCCc-----------------------------EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEE
Q 019482 220 RGDKALLAVYDISTWN-----------------------------KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV 270 (340)
Q Consensus 220 ~~~d~~i~i~d~~~~~-----------------------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 270 (340)
++-|.+|++||+...+ ....+.+|+..|+-++|+|.-.+|++|++|..|++
T Consensus 153 aSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 153 ASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred ecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeE
Confidence 9999999999975211 12345778889999999999999999999999999
Q ss_pred EeccCceE-eecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482 271 VDVKKMEI-NHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD 322 (340)
Q Consensus 271 ~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (340)
|.+...+. ..-...+| .+.|.++-|+|...++++.|.|+.|+|||+.....
T Consensus 233 WrmnetKaWEvDtcrgH-~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~ 284 (1202)
T KOG0292|consen 233 WRMNETKAWEVDTCRGH-YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS 284 (1202)
T ss_pred EEeccccceeehhhhcc-cCCcceEEecCccceeEecCCCccEEEEecccccc
Confidence 99876442 22334577 67999999999999999999999999999987653
No 62
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-33 Score=207.80 Aligned_cols=282 Identities=15% Similarity=0.151 Sum_probs=227.1
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
--|++-+.++. ++.||.+.+ .|....+|.-. .....-++.||.+.|.+++.+-+.+++++|+.
T Consensus 10 ERplTqiKyN~---eGDLlFsca------KD~~~~vw~s~--------nGerlGty~GHtGavW~~Did~~s~~liTGSA 72 (327)
T KOG0643|consen 10 ERPLTQIKYNR---EGDLLFSCA------KDSTPTVWYSL--------NGERLGTYDGHTGAVWCCDIDWDSKHLITGSA 72 (327)
T ss_pred ccccceEEecC---CCcEEEEec------CCCCceEEEec--------CCceeeeecCCCceEEEEEecCCcceeeeccc
Confidence 46788899988 455666555 45568899764 33444678999999999999999999999999
Q ss_pred CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-----CCcEEEEeCC-------CCceeeccc
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----DGHLRIMHWP-------SLRIILDEP 151 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~~d~~-------~~~~~~~~~ 151 (340)
|.++++||+.++++..... ...+|..+.|+++|++++.... .+.|.++|++ ..++..++.
T Consensus 73 D~t~kLWDv~tGk~la~~k--------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~ 144 (327)
T KOG0643|consen 73 DQTAKLWDVETGKQLATWK--------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP 144 (327)
T ss_pred cceeEEEEcCCCcEEEEee--------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec
Confidence 9999999999999876664 4478999999999998877653 3679999997 345567777
Q ss_pred cCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEEC
Q 019482 152 KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231 (340)
Q Consensus 152 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~ 231 (340)
.+.+.++.+-|.|-+++|++|..||.|.+||+++++....-...|...|+.++++|+..+ +++++.|.+-++||.
T Consensus 145 t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~-----FiT~s~Dttakl~D~ 219 (327)
T KOG0643|consen 145 TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTY-----FITGSKDTTAKLVDV 219 (327)
T ss_pred CCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcce-----EEecccCccceeeec
Confidence 777899999999999999999999999999999997766665566678999999999998 899999999999999
Q ss_pred CCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEE--EeccCceE------------eecccccccccceeeEEEe
Q 019482 232 STWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV--VDVKKMEI------------NHWSKRLHLGTSIALVEFC 297 (340)
Q Consensus 232 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i--~d~~~~~~------------~~~~~~~~~~~~i~~~~~~ 297 (340)
++.+.++.+.. ..|+++.+++|...+++.|+.....-+ =+.+.++. +..+ .+| -+||++++|+
T Consensus 220 ~tl~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv-kGH-FGPINsvAfh 296 (327)
T KOG0643|consen 220 RTLEVLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV-KGH-FGPINSVAFH 296 (327)
T ss_pred cceeeEEEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc-ccc-ccCcceeEEC
Confidence 99988877765 458999999998777777654322211 11222221 2222 356 4799999999
Q ss_pred cCCeEEEEEecCCcEEEEEec
Q 019482 298 PTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 298 ~~~~~l~~~~~dg~i~iw~~~ 318 (340)
|+|+..++|+.||.|++..++
T Consensus 297 PdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 297 PDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred CCCcccccCCCCceEEEEEec
Confidence 999999999999999999875
No 63
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=2.2e-34 Score=225.96 Aligned_cols=281 Identities=15% Similarity=0.194 Sum_probs=235.9
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
-++|..+.|-++.+ .++.|+ .|..|.+|+....+..+ ..+|.|..+.|+++.|.++++++++++.
T Consensus 175 ~gev~~v~~l~~sd---tlatgg------~Dr~Ik~W~v~~~k~~~------~~tLaGs~g~it~~d~d~~~~~~iAas~ 239 (459)
T KOG0288|consen 175 EGEVHDVEFLRNSD---TLATGG------SDRIIKLWNVLGEKSEL------ISTLAGSLGNITSIDFDSDNKHVIAASN 239 (459)
T ss_pred ccccceeEEccCcc---hhhhcc------hhhhhhhhhcccchhhh------hhhhhccCCCcceeeecCCCceEEeecC
Confidence 46788889988543 456555 67779999988655222 3457778889999999999999999999
Q ss_pred CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEec
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~ 163 (340)
|+.+++|++...+....+.. |.+.|+++.|......+++|+.|.+|++||+....+...... ...+.++..+
T Consensus 240 d~~~r~Wnvd~~r~~~TLsG-------HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~ 311 (459)
T KOG0288|consen 240 DKNLRLWNVDSLRLRHTLSG-------HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS 311 (459)
T ss_pred CCceeeeeccchhhhhhhcc-------cccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec
Confidence 99999999998877666543 889999999998777799999999999999998777765543 3456666666
Q ss_pred CCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeecc
Q 019482 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL 243 (340)
Q Consensus 164 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 243 (340)
...+++|..|++|++||.+...+......+ +.|+++..++++.. +++++.|..+.+.|+++.+....+...
T Consensus 312 --~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g--g~vtSl~ls~~g~~-----lLsssRDdtl~viDlRt~eI~~~~sA~ 382 (459)
T KOG0288|consen 312 --ISDVISGHFDKKVRFWDIRSADKTRSVPLG--GRVTSLDLSMDGLE-----LLSSSRDDTLKVIDLRTKEIRQTFSAE 382 (459)
T ss_pred --ceeeeecccccceEEEeccCCceeeEeecC--cceeeEeeccCCeE-----EeeecCCCceeeeecccccEEEEeecc
Confidence 567899999999999999999998888744 47999999999998 788899999999999998877666544
Q ss_pred C----CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482 244 R----KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK 316 (340)
Q Consensus 244 ~----~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~ 316 (340)
. ...+.+.|||++.|+++|+.||.|+||++.++++...+...+....|++++|+|.|..|++++.++.+.+|.
T Consensus 383 g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 383 GFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 3 457889999999999999999999999999999998886666434799999999999999999999999994
No 64
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7e-33 Score=232.67 Aligned_cols=280 Identities=15% Similarity=0.130 Sum_probs=239.0
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 84 (340)
..|.+++++.+ ..+++ ++..+.+.+|+.+ +..+.+++.. +.+.+..|-|.++++++|..+
T Consensus 374 ~dVRsl~vS~d---~~~~~-------Sga~~SikiWn~~--------t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~ 433 (888)
T KOG0306|consen 374 SDVRSLCVSSD---SILLA-------SGAGESIKIWNRD--------TLKCIRTITC--GYILASKFVPGDRYIVLGTKN 433 (888)
T ss_pred hheeEEEeecC---ceeee-------ecCCCcEEEEEcc--------CcceeEEecc--ccEEEEEecCCCceEEEeccC
Confidence 45778888873 34666 3455669999987 4455555543 478999999999999999999
Q ss_pred CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC-----Cce--ee-----cccc
Q 019482 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-----LRI--IL-----DEPK 152 (340)
Q Consensus 85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-----~~~--~~-----~~~~ 152 (340)
|.+.+||+.+........ .|.+.+..++.+||++.+++|+.|.+|++||..- +.. .. +...
T Consensus 434 Gel~vfdlaS~~l~Eti~-------AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe 506 (888)
T KOG0306|consen 434 GELQVFDLASASLVETIR-------AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE 506 (888)
T ss_pred CceEEEEeehhhhhhhhh-------ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe
Confidence 999999999877655443 3889999999999999999999999999999741 111 11 1122
Q ss_pred CccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC
Q 019482 153 AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (340)
Q Consensus 153 ~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~ 232 (340)
..+.|.|+.+|||+++|+.+--|.+|++|-+++-+....+.+ |.-+|.|+..+||++. +++++.|..|++|-++
T Consensus 507 l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYG-HkLPV~smDIS~DSkl-----ivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 507 LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYG-HKLPVLSMDISPDSKL-----IVTGSADKNVKIWGLD 580 (888)
T ss_pred ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecc-cccceeEEeccCCcCe-----EEeccCCCceEEeccc
Confidence 345799999999999999999999999999999988888875 5579999999999997 8999999999999999
Q ss_pred CCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcE
Q 019482 233 TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGA 312 (340)
Q Consensus 233 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 312 (340)
-|.+-+.+..|+..|.++.|-|+...+++++.|+.|+-||-...+.++.+. +| ...|++++.+|+|.+++++|.|..|
T Consensus 581 FGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-~H-~~ev~cLav~~~G~~vvs~shD~sI 658 (888)
T KOG0306|consen 581 FGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-GH-HSEVWCLAVSPNGSFVVSSSHDKSI 658 (888)
T ss_pred cchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec-cc-hheeeeeEEcCCCCeEEeccCCcee
Confidence 999999999999999999999999999999999999999999999988875 56 3689999999999999999999999
Q ss_pred EEEEecC
Q 019482 313 MITKLTV 319 (340)
Q Consensus 313 ~iw~~~~ 319 (340)
++|....
T Consensus 659 RlwE~td 665 (888)
T KOG0306|consen 659 RLWERTD 665 (888)
T ss_pred EeeeccC
Confidence 9998764
No 65
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1.1e-32 Score=236.25 Aligned_cols=240 Identities=15% Similarity=0.182 Sum_probs=186.0
Q ss_pred EEecCCCCeeEEEEcC-CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCC-CeEEEccCCCc
Q 019482 58 VFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGH 135 (340)
Q Consensus 58 ~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~ 135 (340)
.+.+|.+.|++++|+| ++++|++++.|++|++||+.+................|...|.+++|+|++ ++|++++.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4779999999999999 888999999999999999976532111000000112478899999999975 68999999999
Q ss_pred EEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEE
Q 019482 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (340)
Q Consensus 136 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (340)
|++||+++++....+..|...|.+++|+|++++|++++.|++|++||+++++.+..+..+.......+.|.+++..+ +.
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i-vt 228 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI-IT 228 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE-EE
Confidence 99999999988888888888999999999999999999999999999999998888876554445678899887652 11
Q ss_pred EEEecCCcceEEEEECCCCc-EEeeeecc-CCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceEeeccccccccccee
Q 019482 216 CTVQRGDKALLAVYDISTWN-KIGHKRLL-RKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIA 292 (340)
Q Consensus 216 ~~~~~~~d~~i~i~d~~~~~-~~~~~~~~-~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~i~ 292 (340)
+....+.|+.|++||+++.. ++.....+ ...+....|++++++|++++ .|+.|++||+.+++........+ ..++.
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~ 307 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHK 307 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCc
Confidence 11223468999999998765 33322222 23455667899999999887 49999999999988776543333 45788
Q ss_pred eEEEecC
Q 019482 293 LVEFCPT 299 (340)
Q Consensus 293 ~~~~~~~ 299 (340)
.++|.|.
T Consensus 308 g~~~~pk 314 (493)
T PTZ00421 308 GLCMMPK 314 (493)
T ss_pred ceEeccc
Confidence 8888884
No 66
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.6e-33 Score=216.68 Aligned_cols=264 Identities=16% Similarity=0.190 Sum_probs=218.0
Q ss_pred eeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC
Q 019482 55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (340)
Q Consensus 55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 134 (340)
....|..|...|.+++.+|+.+++++|+.|..-.+|+..++.....+. .|...|.++.|+.+|.+||+|..+|
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~elt-------gHKDSVt~~~FshdgtlLATGdmsG 128 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELT-------GHKDSVTCCSFSHDGTLLATGDMSG 128 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEec-------CCCCceEEEEEccCceEEEecCCCc
Confidence 346788999999999999999999999999999999999988655544 3889999999999999999999999
Q ss_pred cEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE
Q 019482 135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (340)
Q Consensus 135 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (340)
.|+||...++.....+...-..+.-+.|+|.+..|+.|+.||.+.+|.+.++...+.+.+ +..++++=.|.|+|++
T Consensus 129 ~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~G-h~~~ct~G~f~pdGKr--- 204 (399)
T KOG0296|consen 129 KVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSG-HNSPCTCGEFIPDGKR--- 204 (399)
T ss_pred cEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecC-CCCCcccccccCCCce---
Confidence 999999999988877765666888999999999999999999999999998766666765 6678999999999998
Q ss_pred EEEEecCCcceEEEEECCCCcEEeeeeccC--------------------------------------------------
Q 019482 215 FCTVQRGDKALLAVYDISTWNKIGHKRLLR-------------------------------------------------- 244 (340)
Q Consensus 215 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-------------------------------------------------- 244 (340)
++++..|++|++||+.+++++..+....
T Consensus 205 --~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~ 282 (399)
T KOG0296|consen 205 --ILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQ 282 (399)
T ss_pred --EEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccc
Confidence 8899999999999999988776554110
Q ss_pred -CCeeE---EEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482 245 -KPASV---LSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 245 -~~i~~---~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
..+.+ +.++..=.+.|+|+.||+|.|||+....+.... .| ..+|..+.|-+ ..+|++++.+|.|+.||.+..
T Consensus 283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c--~h-e~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG 358 (399)
T KOG0296|consen 283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC--EH-EDGVTKLKWLN-TDYLLTACANGKVRQWDARTG 358 (399)
T ss_pred hhhhhhhhhcccccccchhhcccccceEEEEecccchhheec--cC-CCceEEEEEcC-cchheeeccCceEEeeecccc
Confidence 00111 222223346788999999999999887776654 34 56899999998 789999999999999999766
Q ss_pred CCCCCCcccccccccccc
Q 019482 321 ADWKGLSLPLLHSHSQNS 338 (340)
Q Consensus 321 ~~~~~~~~~~~h~~~v~~ 338 (340)
. ......+|...|..
T Consensus 359 ~---l~~~y~GH~~~Il~ 373 (399)
T KOG0296|consen 359 Q---LKFTYTGHQMGILD 373 (399)
T ss_pred c---eEEEEecCchheeE
Confidence 6 34556667666543
No 67
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.1e-32 Score=202.70 Aligned_cols=274 Identities=16% Similarity=0.216 Sum_probs=230.7
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC-CCCeEEEE
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCS 81 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~ 81 (340)
...+|.+++|+-+. .-++.|+ .+.++.+|+++.. .........+|.+.|-.++|+| ..+.++++
T Consensus 19 ~~~~v~Sv~wn~~g---~~lasgs------~dktv~v~n~e~~------r~~~~~~~~gh~~svdql~w~~~~~d~~ata 83 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDG---TKLASGS------FDKTVSVWNLERD------RFRKELVYRGHTDSVDQLCWDPKHPDLFATA 83 (313)
T ss_pred hhhcceEEEEcccC---ceeeecc------cCCceEEEEecch------hhhhhhcccCCCcchhhheeCCCCCcceEEe
Confidence 35789999999944 4567666 5666999999865 2223345678999999999998 45689999
Q ss_pred ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEE
Q 019482 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (340)
Q Consensus 82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~ 161 (340)
+.|.+|++||...+++....... +.-.-+.|+|+|+++++++.|..|...|.++.+..... .....+..+.
T Consensus 84 s~dk~ir~wd~r~~k~~~~i~~~--------~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~-~~~~e~ne~~ 154 (313)
T KOG1407|consen 84 SGDKTIRIWDIRSGKCTARIETK--------GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE-QFKFEVNEIS 154 (313)
T ss_pred cCCceEEEEEeccCcEEEEeecc--------CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh-cccceeeeee
Confidence 99999999999999887766432 33456899999999999999999999999887766544 3344678889
Q ss_pred ecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee
Q 019482 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (340)
Q Consensus 162 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 241 (340)
|+-++.+++.....|.|.|.....-+++..+..|. ....|+.|+|+|++ +++|+.|..+.+||+...-+++.+.
T Consensus 155 w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~-snCicI~f~p~Gry-----fA~GsADAlvSLWD~~ELiC~R~is 228 (313)
T KOG1407|consen 155 WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP-SNCICIEFDPDGRY-----FATGSADALVSLWDVDELICERCIS 228 (313)
T ss_pred ecCCCCEEEEecCCceEEEEeccccccccccccCC-cceEEEEECCCCce-----EeeccccceeeccChhHhhhheeec
Confidence 98777777666667999999999999999998655 56899999999999 8999999999999999988999999
Q ss_pred ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC
Q 019482 242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE 309 (340)
Q Consensus 242 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 309 (340)
.++-+|..++||.||++||+|++|..|-|=++++|..+..+. ..++...++|+|...+||.+..|
T Consensus 229 RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~---~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 229 RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP---CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee---ccCCceeEEecCCCceeeEEecC
Confidence 999999999999999999999999999999999999887654 26789999999999999988876
No 68
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.3e-34 Score=216.58 Aligned_cols=254 Identities=14% Similarity=0.184 Sum_probs=215.2
Q ss_pred cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccC-CCCCCCCCeEEEEEecCCCeEEEccCCCcEEEE
Q 019482 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKM-PPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (340)
Q Consensus 61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 139 (340)
+..+-+.|..|+|||++|++|+.||-|.+||..+++....+..... ...-+..+|.|+.|+.|...+++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 4456689999999999999999999999999999876555533222 223367899999999999999999999999999
Q ss_pred eCCCCceeeccc-cCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEE
Q 019482 140 HWPSLRIILDEP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218 (340)
Q Consensus 140 d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 218 (340)
.+++|.++.++. .|...|+++.|+.|+..+++++.|.++++.-+++|++++.+.++. ..|+...|+++|.+ ++
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHs-Syvn~a~ft~dG~~-----ii 364 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHS-SYVNEATFTDDGHH-----II 364 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcc-ccccceEEcCCCCe-----EE
Confidence 999999999887 566799999999999999999999999999999999999998654 67999999999998 89
Q ss_pred ecCCcceEEEEECCCCcEEeeeeccC--CCeeEEEECC-CCCEEEEeeCCCcEEEEeccCceEeeccccccc-ccceeeE
Q 019482 219 QRGDKALLAVYDISTWNKIGHKRLLR--KPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL-GTSIALV 294 (340)
Q Consensus 219 ~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~i~~~ 294 (340)
+++.|++|++|+.++.+++..++... .+|+++-.-| +...++++...++++|.++. |+.++.+..+.. ++...+.
T Consensus 365 saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~ 443 (508)
T KOG0275|consen 365 SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINA 443 (508)
T ss_pred EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEE
Confidence 99999999999999999988876553 5677877777 45788889999999999985 455555543332 3456677
Q ss_pred EEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 295 EFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 295 ~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
..+|.|.++.+.+.|+.++.+.+....
T Consensus 444 ~lSpkGewiYcigED~vlYCF~~~sG~ 470 (508)
T KOG0275|consen 444 ILSPKGEWIYCIGEDGVLYCFSVLSGK 470 (508)
T ss_pred EecCCCcEEEEEccCcEEEEEEeecCc
Confidence 899999999999999999999886544
No 69
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=6.1e-32 Score=231.77 Aligned_cols=254 Identities=14% Similarity=0.103 Sum_probs=195.9
Q ss_pred CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeecc--c----cCCCCCCCCCeEEEEEec-CCCeEEEccCCC
Q 019482 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLA--K----KMPPLQDAGPQKCLSFSV-DGSRFAAGGVDG 134 (340)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~--~----~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg 134 (340)
|-..|+....++++..+++++.+.....|+...+........ . ......|.+.|.+++|+| ++++|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 344566667777877778888887777887655432221110 0 011234889999999999 888999999999
Q ss_pred cEEEEeCCCCc-------eeeccccCccceeEEEecCCC-CeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEc
Q 019482 135 HLRIMHWPSLR-------IILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS 206 (340)
Q Consensus 135 ~i~~~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 206 (340)
+|++||+.++. .+..+.+|...|.+++|+|++ ++|++++.|++|+|||+++++.+..+.. +...|.+++|+
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~-h~~~V~sla~s 177 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC-HSDQITSLEWN 177 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC-CCCceEEEEEE
Confidence 99999997652 345667788899999999975 6899999999999999999988887764 44679999999
Q ss_pred cCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCC-eeEEEECCCCCEEEEee----CCCcEEEEeccCceEeec
Q 019482 207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKP-ASVLSISLDGKYLAMGS----KDGDICVVDVKKMEINHW 281 (340)
Q Consensus 207 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~----~dg~i~i~d~~~~~~~~~ 281 (340)
|++.. +++++.|+.|++||+++++.+..+..|.+. ...+.|.+++..+++++ .|+.|++||+++......
T Consensus 178 pdG~l-----Latgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~ 252 (493)
T PTZ00421 178 LDGSL-----LCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS 252 (493)
T ss_pred CCCCE-----EEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence 99987 789999999999999999988888888654 45678999887777654 478999999987543322
Q ss_pred ccccccccceeeEEEecCCeEEEEEe-cCCcEEEEEecCCC
Q 019482 282 SKRLHLGTSIALVEFCPTQRVVLTAS-KEWGAMITKLTVPA 321 (340)
Q Consensus 282 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~ 321 (340)
....+....+....|++++++|++++ .|+.|++|++....
T Consensus 253 ~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 253 TVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred EeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 22223234566678999999999887 49999999997654
No 70
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-31 Score=199.18 Aligned_cols=283 Identities=13% Similarity=0.117 Sum_probs=226.6
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
-.++|.++.|+++. .+++. +..+..+++|+.. +.....++..++-.|..++|......++.++
T Consensus 13 ~~~~i~sl~fs~~G---~~lit------ss~dDsl~LYd~~--------~g~~~~ti~skkyG~~~~~Fth~~~~~i~sS 75 (311)
T KOG1446|consen 13 TNGKINSLDFSDDG---LLLIT------SSEDDSLRLYDSL--------SGKQVKTINSKKYGVDLACFTHHSNTVIHSS 75 (311)
T ss_pred CCCceeEEEecCCC---CEEEE------ecCCCeEEEEEcC--------CCceeeEeecccccccEEEEecCCceEEEcc
Confidence 36889999999954 34442 4467789999987 5555566766777889999987777777666
Q ss_pred c--CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEE
Q 019482 83 T--NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (340)
Q Consensus 83 ~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~ 160 (340)
. |.+|+..++.+++.++.+.+ |...|..++.+|-+..+++++.|++|++||++..++...+.....+ .+
T Consensus 76 tk~d~tIryLsl~dNkylRYF~G-------H~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~ 146 (311)
T KOG1446|consen 76 TKEDDTIRYLSLHDNKYLRYFPG-------HKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IA 146 (311)
T ss_pred CCCCCceEEEEeecCceEEEcCC-------CCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ce
Confidence 5 78999999999998877754 8899999999998899999999999999999977766555433333 47
Q ss_pred EecCCCCeEEEeeCCCeEEEEEccCC--eeEEEee--cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE
Q 019482 161 DFSLDSEFLATTSTDGSARIWKTEDG--VAWTFLT--RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (340)
Q Consensus 161 ~~~~~~~~l~~~~~d~~v~iwd~~~~--~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 236 (340)
+|.|+|-++|++.....|++||++.- .+...+. .......+.+.|+|||+. ++.+...+.+++.|.-.|..
T Consensus 147 AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~-----iLlsT~~s~~~~lDAf~G~~ 221 (311)
T KOG1446|consen 147 AFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS-----ILLSTNASFIYLLDAFDGTV 221 (311)
T ss_pred eECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE-----EEEEeCCCcEEEEEccCCcE
Confidence 89999999999988779999999863 3333333 223456889999999998 77788899999999999998
Q ss_pred EeeeeccCCCe---eEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEE
Q 019482 237 IGHKRLLRKPA---SVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAM 313 (340)
Q Consensus 237 ~~~~~~~~~~i---~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 313 (340)
+..+..+...- -..+|+||++++++|+.||+|.+|+++++.....+...+ ..++.++.|+|.-.++++++ ..+.
T Consensus 222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~-~~~~~~~~fnP~~~mf~sa~--s~l~ 298 (311)
T KOG1446|consen 222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPN-GGPVSCVRFNPRYAMFVSAS--SNLV 298 (311)
T ss_pred eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCC-CCCccccccCCceeeeeecC--ceEE
Confidence 88877665432 567899999999999999999999999999988876555 67999999999877777764 4588
Q ss_pred EEEecC
Q 019482 314 ITKLTV 319 (340)
Q Consensus 314 iw~~~~ 319 (340)
+|-...
T Consensus 299 fw~p~~ 304 (311)
T KOG1446|consen 299 FWLPDE 304 (311)
T ss_pred EEeccc
Confidence 886543
No 71
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.2e-32 Score=204.46 Aligned_cols=269 Identities=17% Similarity=0.207 Sum_probs=214.1
Q ss_pred CCCceEEEEeCCCCCCc----ccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCC
Q 019482 33 SPSVLEIFSFDPKTTSV----YTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP 108 (340)
Q Consensus 33 ~~~~i~i~~~~~~~~~~----~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 108 (340)
....|.-+.+++..... ..+..+.+.+..|.+.|++++. ++.++|+|+.|-+|+|||+........+.
T Consensus 9 YE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll------ 80 (362)
T KOG0294|consen 9 YEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL------ 80 (362)
T ss_pred eeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee------
Confidence 44446666666555222 1233346678899999999999 59999999999999999998877655554
Q ss_pred CCCCCCeEEEEEecCCC--eEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCC
Q 019482 109 LQDAGPQKCLSFSVDGS--RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG 186 (340)
Q Consensus 109 ~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~ 186 (340)
.|.+.|+++.|.+... .|++|+.||.|.+|+....+.+..+..|...|+.++++|.+++-++.+.|+.+++||+-+|
T Consensus 81 -~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 81 -SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRG 159 (362)
T ss_pred -ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcC
Confidence 3889999999999765 8999999999999999999999999999999999999999999999999999999999988
Q ss_pred eeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCC
Q 019482 187 VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG 266 (340)
Q Consensus 187 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 266 (340)
+.-..+...+. .+.+.|+|.|.++ +. .....|-+|.+.+.......... ..+.++.|- ++.+|++|.+|+
T Consensus 160 r~a~v~~L~~~--at~v~w~~~Gd~F-----~v-~~~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~ 229 (362)
T KOG0294|consen 160 RVAFVLNLKNK--ATLVSWSPQGDHF-----VV-SGRNKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDNE 229 (362)
T ss_pred ccceeeccCCc--ceeeEEcCCCCEE-----EE-EeccEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCCc
Confidence 87666654443 4569999999972 22 33566889998876654433332 345566553 567999999999
Q ss_pred cEEEEeccCceEeecccccccccceeeEEE--ecCCeEEEEEecCCcEEEEEecCCCC
Q 019482 267 DICVVDVKKMEINHWSKRLHLGTSIALVEF--CPTQRVVLTASKEWGAMITKLTVPAD 322 (340)
Q Consensus 267 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (340)
.|++||..+..++..+ .+| ...|.++.+ .|++.+|+++|.||.|+||++++...
T Consensus 230 ~i~~~D~ds~~~~~~~-~AH-~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k 285 (362)
T KOG0294|consen 230 WISLKDTDSDTPLTEF-LAH-ENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETK 285 (362)
T ss_pred eEEEeccCCCccceee-ecc-hhheeeeEEEecCCceEEEEeccCceEEEEEcccccc
Confidence 9999999987777665 577 679999985 46789999999999999999987743
No 72
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=3.9e-31 Score=227.90 Aligned_cols=255 Identities=9% Similarity=0.093 Sum_probs=186.1
Q ss_pred ccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCC-CCeEEEEecCCCEEEEEecCceee-eeeccccCCC
Q 019482 31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATD-INLLAKKMPP 108 (340)
Q Consensus 31 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iw~~~~~~~~-~~~~~~~~~~ 108 (340)
++..+.+.+|+... ......+.+|.+.|.+++|+|+ +.+|++|+.|+.|+|||+.+.... ..........
T Consensus 50 GG~~gvI~L~~~~r--------~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L 121 (568)
T PTZ00420 50 GGLIGAIRLENQMR--------KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL 121 (568)
T ss_pred CCceeEEEeeecCC--------CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe
Confidence 44667788887652 2234668899999999999996 789999999999999999764321 1100000011
Q ss_pred CCCCCCeEEEEEecCCCe-EEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCe
Q 019482 109 LQDAGPQKCLSFSVDGSR-FAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV 187 (340)
Q Consensus 109 ~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~ 187 (340)
..|...|.+++|+|++.. |++++.|++|++||+++++....+. +...|.+++|+|+|.+|++++.|+.|+|||+++++
T Consensus 122 ~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 122 KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE 200 (568)
T ss_pred ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc
Confidence 247789999999998875 5788999999999999988766553 55689999999999999999999999999999999
Q ss_pred eEEEeecCCCCc----eeeEEEccCCCcceEEEEEecCCc----ceEEEEECCC-CcEEeeeeccC--CCeeEEEECCCC
Q 019482 188 AWTFLTRNSDEK----IELCRFSKDGTKPFLFCTVQRGDK----ALLAVYDIST-WNKIGHKRLLR--KPASVLSISLDG 256 (340)
Q Consensus 188 ~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~d----~~i~i~d~~~-~~~~~~~~~~~--~~i~~~~~s~~~ 256 (340)
.+..+..+.... +....|++++.+ +++++.+ ++|++||+++ .+++....... +.+......++|
T Consensus 201 ~i~tl~gH~g~~~s~~v~~~~fs~d~~~-----IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg 275 (568)
T PTZ00420 201 IASSFHIHDGGKNTKNIWIDGLGGDDNY-----ILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG 275 (568)
T ss_pred EEEEEecccCCceeEEEEeeeEcCCCCE-----EEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC
Confidence 988887554321 222345678776 5555544 4899999995 45554443322 333333335568
Q ss_pred CEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCC
Q 019482 257 KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300 (340)
Q Consensus 257 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 300 (340)
.++++|+.|+.|++|++..+.... +.......+..+++|.|+.
T Consensus 276 ~l~lsGkGD~tIr~~e~~~~~~~~-l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 276 LIYLIGKGDGNCRYYQHSLGSIRK-VNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CEEEEEECCCeEEEEEccCCcEEe-ecccccCCCccceEEcccc
Confidence 999999999999999998775433 3233335789999999964
No 73
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-31 Score=200.18 Aligned_cols=249 Identities=15% Similarity=0.213 Sum_probs=203.2
Q ss_pred EEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC--CCc
Q 019482 58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGH 135 (340)
Q Consensus 58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~ 135 (340)
.+..-...|+++.|+++|.++++++.|..++|||..++.+...+.. +.-.+..++|....+.++.++. |.+
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s-------kkyG~~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS-------KKYGVDLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeec-------ccccccEEEEecCCceEEEccCCCCCc
Confidence 3444567899999999999999999999999999999988777654 3346778888777666766665 889
Q ss_pred EEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEE
Q 019482 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (340)
Q Consensus 136 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (340)
|+..++.+.+.++.+.+|...|..++.+|-+..+++++.|++|++||++..++...+... .-..++|+|+|-.
T Consensus 82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~---~~pi~AfDp~GLi---- 154 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS---GRPIAAFDPEGLI---- 154 (311)
T ss_pred eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC---CCcceeECCCCcE----
Confidence 999999999999999999999999999998899999999999999999988887766532 2456899999985
Q ss_pred EEEecCCcceEEEEECCCCc--EEeeeec---cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccccc-
Q 019482 216 CTVQRGDKALLAVYDISTWN--KIGHKRL---LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGT- 289 (340)
Q Consensus 216 ~~~~~~~d~~i~i~d~~~~~--~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~- 289 (340)
++.+.....|++||+|.-. +...+.. .....+.+.|||||++|+.++..+.+++.|.-+|..+..+.......
T Consensus 155 -fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~ 233 (311)
T KOG1446|consen 155 -FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGN 233 (311)
T ss_pred -EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCC
Confidence 4555555599999999752 3333333 35678999999999999999999999999999998776653222111
Q ss_pred ceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 290 SIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 290 ~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
--.+..|+||++++++|+.||+|.+|+++...
T Consensus 234 ~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 234 LPLSATFTPDSKFVLSGSDDGTIHVWNLETGK 265 (311)
T ss_pred cceeEEECCCCcEEEEecCCCcEEEEEcCCCc
Confidence 22577899999999999999999999997655
No 74
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.5e-33 Score=215.27 Aligned_cols=281 Identities=14% Similarity=0.159 Sum_probs=227.1
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 84 (340)
.-|.|++=.|. ....+++|+ .||.++||++. ...+...++.|.+.|..+++.. ..+++++.|
T Consensus 67 dGV~~lakhp~--~ls~~aSGs------~DG~VkiWnls--------qR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdD 128 (433)
T KOG0268|consen 67 DGVSCLAKHPN--KLSTVASGS------CDGEVKIWNLS--------QRECIRTFKAHEGLVRGICVTQ--TSFFTVGDD 128 (433)
T ss_pred cccchhhcCcc--hhhhhhccc------cCceEEEEehh--------hhhhhheeecccCceeeEEecc--cceEEecCC
Confidence 44777777774 335677666 56669999998 5566678999999999999986 678999999
Q ss_pred CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecC
Q 019482 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL 164 (340)
Q Consensus 85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 164 (340)
.+|+.|.++.. ....+ .....+..+.-+..+..++++++ .|.|||.....++..+.-..+.|.++.|+|
T Consensus 129 KtvK~wk~~~~-p~~ti--------lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNp 197 (433)
T KOG0268|consen 129 KTVKQWKIDGP-PLHTI--------LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNP 197 (433)
T ss_pred cceeeeeccCC-cceee--------eccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCC
Confidence 99999998763 22222 23456667777767778888875 599999988888888887788999999999
Q ss_pred -CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc-EEeeeec
Q 019482 165 -DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRL 242 (340)
Q Consensus 165 -~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~ 242 (340)
.-..|++|..|++|.+||+++++++..+.... .-+.++|+|..-. +.++..|..++.||++..+ ++.....
T Consensus 198 vETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m--RTN~IswnPeafn-----F~~a~ED~nlY~~DmR~l~~p~~v~~d 270 (433)
T KOG0268|consen 198 VETSILASCASDRSIVLYDLRQASPLKKVILTM--RTNTICWNPEAFN-----FVAANEDHNLYTYDMRNLSRPLNVHKD 270 (433)
T ss_pred CcchheeeeccCCceEEEecccCCccceeeeec--cccceecCccccc-----eeeccccccceehhhhhhcccchhhcc
Confidence 45578888899999999999999988776433 4688999996554 7889999999999999764 6677888
Q ss_pred cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482 243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD 322 (340)
Q Consensus 243 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (340)
|...+.++.|||.|+.+++|+.|.+|+||..+.+.-...+..-- -..|.++.||.|.+++++||+|+.|++|.-.....
T Consensus 271 hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR-Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 271 HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR-MQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred cceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhh-hheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 99999999999999999999999999999998765443332111 35799999999999999999999999999876543
No 75
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=7.4e-32 Score=217.58 Aligned_cols=295 Identities=17% Similarity=0.182 Sum_probs=220.0
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 84 (340)
--|.++++.|. +.-+++|+ .|+.+++|+|......+.. ...........|++++|++.|..|++.+..
T Consensus 168 k~Vsal~~Dp~---GaR~~sGs------~Dy~v~~wDf~gMdas~~~---fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 168 KIVSALAVDPS---GARFVSGS------LDYTVKFWDFQGMDASMRS---FRQLQPCETHQINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred eEEEEeeecCC---Cceeeecc------ccceEEEEecccccccchh---hhccCcccccccceeeecCCCCeEEEEecC
Confidence 34677888884 33455554 7888999999865544322 111122344579999999999999988888
Q ss_pred CCEEEEEecCceeeeeecc-----ccCCCCCCCCCeEEEEEecCC-CeEEEccCCCcEEEEeCCCCceeeccccC-----
Q 019482 85 GGCKLFEVYGGATDINLLA-----KKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDEPKA----- 153 (340)
Q Consensus 85 ~~i~iw~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~----- 153 (340)
...+|+|-+..+....... .....-.|...++|.+|+|+. ..+++++.||++++||+...+.......+
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 8999999876654332221 112234588899999999954 57899999999999999865432222111
Q ss_pred -ccceeEEEecCCCCeEEEeeCCCeEEEEEccCCe--eEEEeecCCCC--ceeeEEEccCCCcceEEEEEecCCcceEEE
Q 019482 154 -HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV--AWTFLTRNSDE--KIELCRFSKDGTKPFLFCTVQRGDKALLAV 228 (340)
Q Consensus 154 -~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~--~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i 228 (340)
.-+++.++|+||++.||+|..||+|.+|+..... +...+...|.. .|+++.||++|++ +++-+.|+++++
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~-----LlSRg~D~tLKv 390 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNY-----LLSRGFDDTLKV 390 (641)
T ss_pred cccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccch-----hhhccCCCceee
Confidence 1268999999999999999999999999975432 23334444443 7999999999998 899999999999
Q ss_pred EECCCCc-EEeeeeccC--CCeeEEEECCCCCEEEEeeC------CCcEEEEeccCceEeecccccccccceeeEEEecC
Q 019482 229 YDISTWN-KIGHKRLLR--KPASVLSISLDGKYLAMGSK------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (340)
Q Consensus 229 ~d~~~~~-~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~ 299 (340)
||+++.+ ++....+.. .+-+.++|||+.++|++|.. .|.+.+||..+.+.++.+... ...|..+.|+|.
T Consensus 391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~--~aSvv~~~Whpk 468 (641)
T KOG0772|consen 391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS--TASVVRCLWHPK 468 (641)
T ss_pred eeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC--CceEEEEeecch
Confidence 9999865 333333322 35577899999999999853 578999999999888776533 468999999999
Q ss_pred CeEEEEEecCCcEEEEEec
Q 019482 300 QRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 300 ~~~l~~~~~dg~i~iw~~~ 318 (340)
-+.|+.|+.||.++|+--.
T Consensus 469 LNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 469 LNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred hhheeeecCCCceEEEECc
Confidence 9999999999999998543
No 76
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.9e-32 Score=229.41 Aligned_cols=251 Identities=14% Similarity=0.176 Sum_probs=202.0
Q ss_pred CCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCC--------------------------------C----
Q 019482 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDP--------------------------------K---- 45 (340)
Q Consensus 2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~--------------------------------~---- 45 (340)
++.+.|.|+.|++ +++++|+|| .|+.|+||.+-. .
T Consensus 265 ah~gaIw~mKFS~---DGKyLAsaG------eD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 265 AHKGAIWAMKFSH---DGKYLASAG------EDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR 335 (712)
T ss_pred ccCCcEEEEEeCC---CCceeeecC------CCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence 3578899999999 677899877 566799998864 0
Q ss_pred CCCc----------------ccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCC
Q 019482 46 TTSV----------------YTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL 109 (340)
Q Consensus 46 ~~~~----------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 109 (340)
.... .-...+...+.||.+.|..+.|+.+ .+|++++.|.+|++|++...+++..+
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F-------- 406 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF-------- 406 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE--------
Confidence 0000 0012344578999999999999965 58999999999999999988876655
Q ss_pred CCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee
Q 019482 110 QDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA 188 (340)
Q Consensus 110 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~ 188 (340)
.|...|+|++|+| |.+||++|+-||.|+||++...+.+. ...-++-|++++|.|||+..+.|+.+|.+++|+.+..+.
T Consensus 407 ~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~ 485 (712)
T KOG0283|consen 407 SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD-WNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKL 485 (712)
T ss_pred ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEe-ehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeE
Confidence 4899999999999 88899999999999999998876654 344557899999999999999999999999999987776
Q ss_pred EEEeecC-------CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCC--CeeEEEECCCCCEE
Q 019482 189 WTFLTRN-------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK--PASVLSISLDGKYL 259 (340)
Q Consensus 189 ~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l 259 (340)
....... ....|+.++|.|..... ++..+.|..|+|||.+..+.+..+++... .-....|+.||++|
T Consensus 486 ~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~----vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~I 561 (712)
T KOG0283|consen 486 VSDFHIRLHNKKKKQGKRITGLQFFPGDPDE----VLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHI 561 (712)
T ss_pred EEeeeEeeccCccccCceeeeeEecCCCCCe----EEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEE
Confidence 5544311 12369999999876542 67778899999999988888877776542 33456899999999
Q ss_pred EEeeCCCcEEEEeccC
Q 019482 260 AMGSKDGDICVVDVKK 275 (340)
Q Consensus 260 ~~~~~dg~i~i~d~~~ 275 (340)
+++++|..|++|++..
T Consensus 562 Vs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 562 VSASEDSWVYIWKNDS 577 (712)
T ss_pred EEeecCceEEEEeCCC
Confidence 9999999999999744
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=3.6e-31 Score=227.33 Aligned_cols=260 Identities=16% Similarity=0.215 Sum_probs=223.7
Q ss_pred cCCCceEEEEeCCCCCCcccCCeeeEE-EecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCC
Q 019482 32 SSPSVLEIFSFDPKTTSVYTSPLVTYV-FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ 110 (340)
Q Consensus 32 ~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 110 (340)
..+++|.+|+.. ....... +.||.+.|.++++..-++++++|+.|.++++||..++.+...+..
T Consensus 225 s~~~tl~~~~~~--------~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~g------- 289 (537)
T KOG0274|consen 225 SDDSTLHLWDLN--------NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQG------- 289 (537)
T ss_pred CCCceeEEeecc--------cceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecC-------
Confidence 356668899876 4444444 999999999999987788999999999999999999999887764
Q ss_pred CCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEE
Q 019482 111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT 190 (340)
Q Consensus 111 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~ 190 (340)
|.+.|.++... ..++++|+.|.+|++|+++++..+..+.+|..+|.++..+ +.++++|+.|++|++||+.+++++.
T Consensus 290 h~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~ 365 (537)
T KOG0274|consen 290 HTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLK 365 (537)
T ss_pred CCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeee
Confidence 77888888875 4478889999999999999999998888888999999998 8899999999999999999999999
Q ss_pred EeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC-cEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEE
Q 019482 191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDIC 269 (340)
Q Consensus 191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 269 (340)
.+.+ |...|+++.+.+. .. +++++.|+.|++||+++. +++..+..|..-+..+. ..+++|++++.|+.|+
T Consensus 366 sl~g-H~~~V~sl~~~~~-~~-----~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD~~Ik 436 (537)
T KOG0274|consen 366 SLSG-HTGRVYSLIVDSE-NR-----LLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSADGTIK 436 (537)
T ss_pred eecC-CcceEEEEEecCc-ce-----EEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEeccccccEE
Confidence 9997 5578999988776 43 789999999999999999 89989999988775554 4678999999999999
Q ss_pred EEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482 270 VVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD 322 (340)
Q Consensus 270 i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (340)
+||..++++++.+...| ...|..+++. ...+++++.||.+++|+++....
T Consensus 437 ~WD~~~~~~~~~~~~~~-~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 437 LWDAEEGECLRTLEGRH-VGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred EeecccCceeeeeccCC-cccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence 99999999998886434 3578888776 46799999999999999976553
No 78
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=2.6e-31 Score=210.10 Aligned_cols=279 Identities=14% Similarity=0.159 Sum_probs=226.1
Q ss_pred eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCC
Q 019482 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (340)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~ 86 (340)
++++.-+|. ...+.+|+ .|..+.+++.+ .......++||...|+.+.|+|+...+++++.|..
T Consensus 222 i~ald~~~s---~~~ilTGG------~d~~av~~d~~--------s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~ 284 (506)
T KOG0289|consen 222 ITALDIIPS---SSKILTGG------EDKTAVLFDKP--------SNQILATLKGHTKKITSVKFHKDLDTVITASADEI 284 (506)
T ss_pred eeEEeecCC---CCcceecC------CCCceEEEecc--------hhhhhhhccCcceEEEEEEeccchhheeecCCcce
Confidence 455555553 23345454 55557788776 44555679999999999999999999999999999
Q ss_pred EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCc--cceeEEEecC
Q 019482 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH--KSVLDMDFSL 164 (340)
Q Consensus 87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~i~~~~~~~ 164 (340)
|+||........... ..|..+|+.+..+|.|.||++++.|++..+.|++++..+....... -.+++.+|+|
T Consensus 285 i~vws~~~~s~~~~~-------~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp 357 (506)
T KOG0289|consen 285 IRVWSVPLSSEPTSS-------RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP 357 (506)
T ss_pred EEeeccccccCcccc-------ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC
Confidence 999998765533222 2488999999999999999999999999999999998876654422 2689999999
Q ss_pred CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC
Q 019482 165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244 (340)
Q Consensus 165 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 244 (340)
||.+|.+|..|+.|+|||+.++..+..+.+ |.++|..++|+.+|-+ ++++.+|+.|++||+|..+....+...+
T Consensus 358 DgLifgtgt~d~~vkiwdlks~~~~a~Fpg-ht~~vk~i~FsENGY~-----Lat~add~~V~lwDLRKl~n~kt~~l~~ 431 (506)
T KOG0289|consen 358 DGLIFGTGTPDGVVKIWDLKSQTNVAKFPG-HTGPVKAISFSENGYW-----LATAADDGSVKLWDLRKLKNFKTIQLDE 431 (506)
T ss_pred CceEEeccCCCceEEEEEcCCccccccCCC-CCCceeEEEeccCceE-----EEEEecCCeEEEEEehhhcccceeeccc
Confidence 999999999999999999999998888876 6689999999999987 8999999999999999887666665443
Q ss_pred -CCeeEEEECCCCCEEEEeeCCCcEEEEeccCc--eEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482 245 -KPASVLSISLDGKYLAMGSKDGDICVVDVKKM--EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL 317 (340)
Q Consensus 245 -~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~ 317 (340)
.++.++.|.+.|.+|+.++.|=+|++++-.+. ..+..+ ..| .+..+.+.|....++++++|.|..++++.+
T Consensus 432 ~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~-~~~-sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 432 KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL-ADH-SGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh-hhc-ccccceeeecccceEEeeccchhheEEeec
Confidence 47999999999999999988766777664443 333333 234 457899999999999999999998888764
No 79
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=9.2e-31 Score=194.73 Aligned_cols=267 Identities=16% Similarity=0.205 Sum_probs=220.3
Q ss_pred EEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcE
Q 019482 57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL 136 (340)
Q Consensus 57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 136 (340)
..++||+.+++.+.++.+|++|.+++.|....+|-..+++....+.. |.+.|+|+..+.+.+++++|+.|.++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~G-------HtGavW~~Did~~s~~liTGSAD~t~ 76 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDG-------HTGAVWCCDIDWDSKHLITGSADQTA 76 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecC-------CCceEEEEEecCCcceeeecccccee
Confidence 34789999999999999999999999999999999888887766654 89999999999999999999999999
Q ss_pred EEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeC-----CCeEEEEEcc-------CCeeEEEeecCCCCceeeEE
Q 019482 137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-----DGSARIWKTE-------DGVAWTFLTRNSDEKIELCR 204 (340)
Q Consensus 137 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~v~iwd~~-------~~~~~~~~~~~~~~~v~~~~ 204 (340)
++||+++|+++.... ...+|..+.|+++|++++.+.. .+.|.++|++ ..++...+..+ +..++.+-
T Consensus 77 kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~-~skit~a~ 154 (327)
T KOG0643|consen 77 KLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP-DSKITSAL 154 (327)
T ss_pred EEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC-ccceeeee
Confidence 999999999987664 4568999999999998877653 3679999998 34555666543 36799999
Q ss_pred EccCCCcceEEEEEecCCcceEEEEECCCCc-EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc
Q 019482 205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK 283 (340)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 283 (340)
|.|-++. ++++..+|.|..||.++++ .+.....|...|+.+.++||..++++++.|.+-++||..+.++++.+.
T Consensus 155 Wg~l~~~-----ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 155 WGPLGET-----IIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT 229 (327)
T ss_pred ecccCCE-----EEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence 9999997 8999999999999999985 455567888999999999999999999999999999999999988775
Q ss_pred ccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC-CC----------CCCccccccccccccCC
Q 019482 284 RLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA-DW----------KGLSLPLLHSHSQNSVS 340 (340)
Q Consensus 284 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~----------~~~~~~~~h~~~v~~vs 340 (340)
. ..|+++.+++|-...++.|+.....-|-...... ++ ..+...++|-+.+|+|+
T Consensus 230 t---e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvA 294 (327)
T KOG0643|consen 230 T---ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVA 294 (327)
T ss_pred e---cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeE
Confidence 3 5699999999988877777654333332222211 11 13455678888888875
No 80
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-32 Score=200.34 Aligned_cols=242 Identities=18% Similarity=0.169 Sum_probs=196.8
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC-CCCeEEEEec
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTT 83 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~ 83 (340)
.-++.++|++..++. +++ .. .|+.+++|+...... +...++.|..+|.++.|++ .++.+++++.
T Consensus 61 D~LfdV~Wse~~e~~-~~~-a~------GDGSLrl~d~~~~s~-------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSW 125 (311)
T KOG0277|consen 61 DGLFDVAWSENHENQ-VIA-AS------GDGSLRLFDLTMPSK-------PIHKFKEHKREVYSVDWNTVRRRIFLTSSW 125 (311)
T ss_pred cceeEeeecCCCcce-EEE-Ee------cCceEEEeccCCCCc-------chhHHHhhhhheEEeccccccceeEEeecc
Confidence 457899999976633 333 33 455699999653332 3356889999999999998 4567888899
Q ss_pred CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 162 (340)
|++|++|+....+....+.. |...|...+|+| .++++++++.|+++++||++.......++.|..+|.++.|
T Consensus 126 D~TiKLW~~~r~~Sv~Tf~g-------h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw 198 (311)
T KOG0277|consen 126 DGTIKLWDPNRPNSVQTFNG-------HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDW 198 (311)
T ss_pred CCceEeecCCCCcceEeecC-------CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecc
Confidence 99999999988777666543 789999999999 6789999999999999999866555557778789999999
Q ss_pred cC-CCCeEEEeeCCCeEEEEEccCCe-eEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc-EEee
Q 019482 163 SL-DSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGH 239 (340)
Q Consensus 163 ~~-~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~ 239 (340)
+. +.+.++||+.|+.|+.||+++-+ ++..+. .|.-.|+.++|||....+ +++++.|-++++||...+. .+..
T Consensus 199 ~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~-gh~~AVRkvk~Sph~~~l----LaSasYDmT~riw~~~~~ds~~e~ 273 (311)
T KOG0277|consen 199 SKYNHNVLATGGVDNLVRGWDIRNLRTPLFELN-GHGLAVRKVKFSPHHASL----LASASYDMTVRIWDPERQDSAIET 273 (311)
T ss_pred cccCCcEEEecCCCceEEEEehhhccccceeec-CCceEEEEEecCcchhhH----hhhccccceEEecccccchhhhhh
Confidence 98 77789999999999999999754 455554 566789999999987764 7899999999999998554 4455
Q ss_pred eeccCCCeeEEEECC-CCCEEEEeeCCCcEEEEec
Q 019482 240 KRLLRKPASVLSISL-DGKYLAMGSKDGDICVVDV 273 (340)
Q Consensus 240 ~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~ 273 (340)
...|..-+..+.||+ ++.++|+.+-|+.++||+.
T Consensus 274 ~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 274 VDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhccceEEeccccccccCceeeecccccceeeecc
Confidence 667777888999998 6789999999999999984
No 81
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=3.7e-30 Score=221.84 Aligned_cols=226 Identities=12% Similarity=0.051 Sum_probs=173.9
Q ss_pred EecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeCCCCc--------eeeccc
Q 019482 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLR--------IILDEP 151 (340)
Q Consensus 81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~--------~~~~~~ 151 (340)
|+.++.+++|+.........+. .|.+.|.+++|+|+ +++|++|+.|++|++||+.++. ....+.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~-------gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~ 122 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLK-------GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK 122 (568)
T ss_pred CCceeEEEeeecCCCceEEEEc-------CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee
Confidence 5567789999876654333332 38899999999996 7899999999999999997642 223456
Q ss_pred cCccceeEEEecCCCCe-EEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEE
Q 019482 152 KAHKSVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD 230 (340)
Q Consensus 152 ~~~~~i~~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d 230 (340)
+|...|.+++|+|++.. |++++.|++|++||+++++.+..+. +...|.+++|+|+|.. +++++.|+.|++||
T Consensus 123 gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~l-----Lat~s~D~~IrIwD 195 (568)
T PTZ00420 123 GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGNL-----LSGTCVGKHMHIID 195 (568)
T ss_pred cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCCCE-----EEEEecCCEEEEEE
Confidence 67789999999998875 5789999999999999998777665 3357999999999996 67788899999999
Q ss_pred CCCCcEEeeeeccCCCeeE-----EEECCCCCEEEEeeCCC----cEEEEeccC-ceEeecccccccccceeeEEEecCC
Q 019482 231 ISTWNKIGHKRLLRKPASV-----LSISLDGKYLAMGSKDG----DICVVDVKK-MEINHWSKRLHLGTSIALVEFCPTQ 300 (340)
Q Consensus 231 ~~~~~~~~~~~~~~~~i~~-----~~~s~~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~ 300 (340)
+++++.+..+..|.+.+.. ..|++++.+|++++.|+ .|+|||++. .+++...........+......++|
T Consensus 196 ~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg 275 (568)
T PTZ00420 196 PRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG 275 (568)
T ss_pred CCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC
Confidence 9999998888888765433 33568999999987764 799999985 4555443221111223333334568
Q ss_pred eEEEEEecCCcEEEEEecCC
Q 019482 301 RVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 301 ~~l~~~~~dg~i~iw~~~~~ 320 (340)
.++++|+.|+.|++|++...
T Consensus 276 ~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 276 LIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CEEEEEECCCeEEEEEccCC
Confidence 89999999999999999654
No 82
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=1.2e-30 Score=206.42 Aligned_cols=257 Identities=15% Similarity=0.191 Sum_probs=221.1
Q ss_pred CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC
Q 019482 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS 143 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 143 (340)
..+.++...|..+.+++|+.|..+.++|...++....+.+ |...|+.+.|+|+...+++++.|..|++|....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~G-------h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~ 292 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKG-------HTKKITSVKFHKDLDTVITASADEIIRVWSVPL 292 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccC-------cceEEEEEEeccchhheeecCCcceEEeecccc
Confidence 3588888888878999999999999999988876655543 778999999999999999999999999999988
Q ss_pred CceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecC-CCCceeeEEEccCCCcceEEEEEecCC
Q 019482 144 LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGD 222 (340)
Q Consensus 144 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~ 222 (340)
.........|..+|+.+..+|.|.||++++.|++..+.|++++.++...... .+-.+++.+|+|||.. +.++..
T Consensus 293 ~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLi-----fgtgt~ 367 (506)
T KOG0289|consen 293 SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLI-----FGTGTP 367 (506)
T ss_pred ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceE-----EeccCC
Confidence 8888888889999999999999999999999999999999999988777642 3345899999999986 788999
Q ss_pred cceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeE
Q 019482 223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRV 302 (340)
Q Consensus 223 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 302 (340)
|+.+++||+.++..+..+.+|.++|..++|+.+|-+|+++++|+.|++||++..+....+.... ..++.++.|.+.|.+
T Consensus 368 d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~-~~~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 368 DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE-KKEVNSLSFDQSGTY 446 (506)
T ss_pred CceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc-cccceeEEEcCCCCe
Confidence 9999999999999999999999999999999999999999999999999999988776665444 357999999999999
Q ss_pred EEEEecCCcEEEEEecC-CCCCCCCccccccccc
Q 019482 303 VLTASKEWGAMITKLTV-PADWKGLSLPLLHSHS 335 (340)
Q Consensus 303 l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~h~~~ 335 (340)
|+.++.| ++||.+.. .+.|........|.+.
T Consensus 447 L~~~g~~--l~Vy~~~k~~k~W~~~~~~~~~sg~ 478 (506)
T KOG0289|consen 447 LGIAGSD--LQVYICKKKTKSWTEIKELADHSGL 478 (506)
T ss_pred EEeecce--eEEEEEecccccceeeehhhhcccc
Confidence 9999877 66666553 3455555555555533
No 83
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=2.7e-31 Score=214.40 Aligned_cols=260 Identities=17% Similarity=0.238 Sum_probs=196.7
Q ss_pred CCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc
Q 019482 52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131 (340)
Q Consensus 52 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 131 (340)
...++..+++|+..|.++++.|.|.+|++|+.|..|++||+..............+ .....|.+++|++.|..|++.+
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P--~E~h~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP--CETHQINSLQYSVTGDQILVVS 233 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCc--ccccccceeeecCCCCeEEEEe
Confidence 34567889999999999999999999999999999999999865433222111111 1345789999999999999998
Q ss_pred CCCcEEEEeCCCCcee------------eccccCccceeEEEecCC-CCeEEEeeCCCeEEEEEccCCee-EEEee----
Q 019482 132 VDGHLRIMHWPSLRII------------LDEPKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVA-WTFLT---- 193 (340)
Q Consensus 132 ~dg~i~~~d~~~~~~~------------~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~-~~~~~---- 193 (340)
.....+++|-...+.. ....+|...+++.+|+|+ .+.+++++.||+++|||+.+.+. ...+.
T Consensus 234 g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence 8899999995533322 123456678999999995 45799999999999999976443 22332
Q ss_pred cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE---EeeeeccCC--CeeEEEECCCCCEEEEeeCCCcE
Q 019482 194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---IGHKRLLRK--PASVLSISLDGKYLAMGSKDGDI 268 (340)
Q Consensus 194 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~---~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i 268 (340)
....-+++.++|+|+++. ++++..||.|.+||..+... ......|.. .|++++||+||++|++-+.|+.+
T Consensus 314 ~g~Rv~~tsC~~nrdg~~-----iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tL 388 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKL-----IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTL 388 (641)
T ss_pred CCcccCceeeecCCCcch-----hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCce
Confidence 223346899999999998 78999999999999865431 233445554 89999999999999999999999
Q ss_pred EEEeccCceE-eecccccccccceeeEEEecCCeEEEEEec------CCcEEEEEec
Q 019482 269 CVVDVKKMEI-NHWSKRLHLGTSIALVEFCPTQRVVLTASK------EWGAMITKLT 318 (340)
Q Consensus 269 ~i~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~iw~~~ 318 (340)
++||++..+. +..........+-+.++|||+.++|++|.. .|.+.+++-.
T Consensus 389 KvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~ 445 (641)
T KOG0772|consen 389 KVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM 445 (641)
T ss_pred eeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecc
Confidence 9999987553 332222222346788999999999999875 3567777654
No 84
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=2.9e-32 Score=214.06 Aligned_cols=251 Identities=19% Similarity=0.226 Sum_probs=213.6
Q ss_pred eEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCcee--eeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC
Q 019482 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT--DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD 133 (340)
Q Consensus 56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 133 (340)
...+..|.+.+..+.|-++...|++|+.|..|++|++...+. ...+. +..++|+.+.|.++++++++++.|
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa-------Gs~g~it~~d~d~~~~~~iAas~d 240 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLA-------GSLGNITSIDFDSDNKHVIAASND 240 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhh-------ccCCCcceeeecCCCceEEeecCC
Confidence 355778999999999999989999999999999999987662 11221 245789999999999999999999
Q ss_pred CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcce
Q 019482 134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213 (340)
Q Consensus 134 g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (340)
+.+++|++...+....+.+|.+.|+++.|......+++|+.|.++++||+....+..++... ..+..+..++. .
T Consensus 241 ~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~--S~cnDI~~~~~--~-- 314 (459)
T KOG0288|consen 241 KNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG--SQCNDIVCSIS--D-- 314 (459)
T ss_pred Cceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc--ccccceEecce--e--
Confidence 99999999999999999999999999999887777999999999999999998888877643 34667776622 1
Q ss_pred EEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc--ccccce
Q 019482 214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL--HLGTSI 291 (340)
Q Consensus 214 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~i 291 (340)
++++..|+.|++||.++..+......++ .|+++..+++|..+.+.+.|..+.++|+++.+....+... ......
T Consensus 315 ---~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDw 390 (459)
T KOG0288|consen 315 ---VISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDW 390 (459)
T ss_pred ---eeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccc
Confidence 6888899999999999999988877766 8999999999999999999999999999998877655321 112358
Q ss_pred eeEEEecCCeEEEEEecCCcEEEEEecCCCCC
Q 019482 292 ALVEFCPTQRVVLTASKEWGAMITKLTVPADW 323 (340)
Q Consensus 292 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 323 (340)
+.+.|||++.|+++||.||.|+||++...+..
T Consensus 391 trvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE 422 (459)
T KOG0288|consen 391 TRVVFSPDGSYVAAGSADGSVYIWSVFTGKLE 422 (459)
T ss_pred ceeEECCCCceeeeccCCCcEEEEEccCceEE
Confidence 89999999999999999999999999877643
No 85
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-31 Score=217.09 Aligned_cols=243 Identities=16% Similarity=0.186 Sum_probs=209.2
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEec-CCCCeeEEEEcCCCCeEEEEe
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE-SEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~ 82 (340)
...|+++.|++ ++..||+|.. ++.+.||+.. +......+.+ |...|-+++|+ +..+.+|+
T Consensus 217 ~~~vtSv~ws~---~G~~LavG~~------~g~v~iwD~~--------~~k~~~~~~~~h~~rvg~laW~--~~~lssGs 277 (484)
T KOG0305|consen 217 EELVTSVKWSP---DGSHLAVGTS------DGTVQIWDVK--------EQKKTRTLRGSHASRVGSLAWN--SSVLSSGS 277 (484)
T ss_pred CCceEEEEECC---CCCEEEEeec------CCeEEEEehh--------hccccccccCCcCceeEEEecc--CceEEEec
Confidence 47899999999 5667887774 4559999987 3334445666 99999999997 77899999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 162 (340)
.++.|..+|++..+...... ..|...|..++|++|+.++|+|+.|+.+.|||....+....+..|...|..++|
T Consensus 278 r~~~I~~~dvR~~~~~~~~~------~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~aw 351 (484)
T KOG0305|consen 278 RDGKILNHDVRISQHVVSTL------QGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAW 351 (484)
T ss_pred CCCcEEEEEEecchhhhhhh------hcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeee
Confidence 99999999998776544421 138899999999999999999999999999999888888899999999999999
Q ss_pred cC-CCCeEEEee--CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee
Q 019482 163 SL-DSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (340)
Q Consensus 163 ~~-~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~ 239 (340)
+| ....||+|+ .|+.|++||..+++.+..+.. ...|..+.|++..+.+. ...+..++.|.||+..+.+.+..
T Consensus 352 cP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt--gsQVcsL~Wsk~~kEi~---sthG~s~n~i~lw~~ps~~~~~~ 426 (484)
T KOG0305|consen 352 CPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT--GSQVCSLIWSKKYKELL---STHGYSENQITLWKYPSMKLVAE 426 (484)
T ss_pred CCCccCceEEcCCCcccEEEEEEcCCCcEeccccc--CCceeeEEEcCCCCEEE---EecCCCCCcEEEEeccccceeee
Confidence 99 677888875 799999999999999988864 45799999999997632 34556678999999999999999
Q ss_pred eeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCc
Q 019482 240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM 276 (340)
Q Consensus 240 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 276 (340)
+.+|...|..++++|||..+++|+.|.++++|++-..
T Consensus 427 l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 427 LLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 9999999999999999999999999999999998664
No 86
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.5e-30 Score=202.53 Aligned_cols=257 Identities=17% Similarity=0.175 Sum_probs=206.5
Q ss_pred CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCC---CeEEEccCCCcEEE
Q 019482 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG---SRFAAGGVDGHLRI 138 (340)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~~ 138 (340)
|.+-|.++... ++.|++|+.||.+++||..... ...+. .|.+++.+++|.-.. ..|++++.|.++++
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~-~~~~~-------Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~L 173 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS-IKTIV-------GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRL 173 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecCCce-EEEEe-------cCCcceeeeEEEecCCccceEEEecCCceEEE
Confidence 77888888876 7899999999999999986543 33333 388999988885533 35999999999999
Q ss_pred EeCCCCcee----eccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccC-------------------------CeeE
Q 019482 139 MHWPSLRII----LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-------------------------GVAW 189 (340)
Q Consensus 139 ~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~-------------------------~~~~ 189 (340)
|.++.++.. ..-.+|...|.++...++|..+++|+.|.+|+||+..+ +.++
T Consensus 174 w~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 174 WKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred EEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence 998876532 23347888999999999999999999999999999321 1233
Q ss_pred EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEE
Q 019482 190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDIC 269 (340)
Q Consensus 190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 269 (340)
..+. +|.++|.++.|++.+. +++++.|.+|+.||+.++..+..+.. ...++++..+|..++|++|+.|..|+
T Consensus 254 vtl~-GHt~~Vs~V~w~d~~v------~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~ir 325 (423)
T KOG0313|consen 254 VTLE-GHTEPVSSVVWSDATV------IYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIR 325 (423)
T ss_pred EEec-ccccceeeEEEcCCCc------eEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCcee
Confidence 3444 5567899999999655 79999999999999999998766665 45799999999999999999999999
Q ss_pred EEeccCc--eEeecccccccccceeeEEEecCC-eEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482 270 VVDVKKM--EINHWSKRLHLGTSIALVEFCPTQ-RVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV 339 (340)
Q Consensus 270 i~d~~~~--~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v 339 (340)
+||.+++ ........+| .+.|.++.|+|.. .+|++++.|+++++||++.+.. ++.....|...|.++
T Consensus 326 l~DPR~~~gs~v~~s~~gH-~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~--plydI~~h~DKvl~v 395 (423)
T KOG0313|consen 326 LWDPRTGDGSVVSQSLIGH-KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA--PLYDIAGHNDKVLSV 395 (423)
T ss_pred ecCCCCCCCceeEEeeecc-hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC--cceeeccCCceEEEE
Confidence 9999874 4555555677 5799999999965 6789999999999999987663 555666676666543
No 87
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=1.3e-30 Score=207.46 Aligned_cols=256 Identities=16% Similarity=0.161 Sum_probs=216.1
Q ss_pred EEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccc---------cCCC--CCCCCCeEEEEEecCCC
Q 019482 57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAK---------KMPP--LQDAGPQKCLSFSVDGS 125 (340)
Q Consensus 57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~---------~~~~--~~~~~~v~~~~~~~~~~ 125 (340)
..+..|.-+|.+++++|++++.++++.+++|.=|++.++.....+... +... ..|...+.+++.++||+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 456779999999999999999999999999999999887744222111 1111 25778999999999999
Q ss_pred eEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEE
Q 019482 126 RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF 205 (340)
Q Consensus 126 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~ 205 (340)
||++|+.|..|.||+.++.+.+..+.+|.+.|.+++|-.....+++++.|++|++|+++....+.++.+|+. .|..+.-
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd-~v~~Ida 294 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD-GVLGIDA 294 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc-ceeeech
Confidence 999999999999999999999999999999999999998888899999999999999999888888887664 6888888
Q ss_pred ccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc
Q 019482 206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285 (340)
Q Consensus 206 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 285 (340)
..-++. +..++.|+++++|++..-.. ..+.++.+.+-|++|-.+ ..+++|+.+|.|.+|++.+.+++.....+
T Consensus 295 L~reR~-----vtVGgrDrT~rlwKi~eesq-lifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~A 367 (479)
T KOG0299|consen 295 LSRERC-----VTVGGRDRTVRLWKIPEESQ-LIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLA 367 (479)
T ss_pred hcccce-----EEeccccceeEEEeccccce-eeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeecc
Confidence 877774 56677999999999954433 357778888999999654 58899999999999999998888766555
Q ss_pred ccc----------cceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482 286 HLG----------TSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 286 ~~~----------~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
|.- ..|++++..|...++++|+.+|.|++|.+...
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 531 26889999999999999999999999999755
No 88
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.98 E-value=8.8e-31 Score=210.95 Aligned_cols=286 Identities=14% Similarity=0.139 Sum_probs=229.2
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
+.-|.+++.+. +. +.+.+|+ .+ .|++|++....... |..........+.|+++...|||+.|++|+.
T Consensus 419 GEvVcAvtIS~-~t--rhVyTgG-kg------cVKVWdis~pg~k~---PvsqLdcl~rdnyiRSckL~pdgrtLivGGe 485 (705)
T KOG0639|consen 419 GEVVCAVTISN-PT--RHVYTGG-KG------CVKVWDISQPGNKS---PVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE 485 (705)
T ss_pred CcEEEEEEecC-Cc--ceeEecC-CC------eEEEeeccCCCCCC---ccccccccCcccceeeeEecCCCceEEeccc
Confidence 34444455554 32 3455444 33 39999998654433 2222222224567999999999999999999
Q ss_pred CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEec
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~ 163 (340)
-.++.|||+.......+.... .....+++++.+||.+..+++..||.|.|||+.+...+..+.+|.+.+.|+.++
T Consensus 486 astlsiWDLAapTprikaelt-----ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis 560 (705)
T KOG0639|consen 486 ASTLSIWDLAAPTPRIKAELT-----SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 560 (705)
T ss_pred cceeeeeeccCCCcchhhhcC-----CcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec
Confidence 999999999876543222111 122467889999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeecc
Q 019482 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL 243 (340)
Q Consensus 164 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 243 (340)
+||..|.+|+-|.+||.||++++..+.... ....|.++..+|++.+ ++.+-.++.+.+......+. ..+..|
T Consensus 561 ~dGtklWTGGlDntvRcWDlregrqlqqhd--F~SQIfSLg~cP~~dW-----lavGMens~vevlh~skp~k-yqlhlh 632 (705)
T KOG0639|consen 561 KDGTKLWTGGLDNTVRCWDLREGRQLQQHD--FSSQIFSLGYCPTGDW-----LAVGMENSNVEVLHTSKPEK-YQLHLH 632 (705)
T ss_pred CCCceeecCCCccceeehhhhhhhhhhhhh--hhhhheecccCCCccc-----eeeecccCcEEEEecCCccc-eeeccc
Confidence 999999999999999999999998876654 4457999999999998 78888888888888765543 567788
Q ss_pred CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 244 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
+..|.++.|.+.|+++++.+.|+.+..|...-|..+...+. .++|.++.+|.|.++|+||+.|....||.+.
T Consensus 633 eScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 633 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKATVYEVI 704 (705)
T ss_pred ccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEecCCCcceEEEEEe
Confidence 89999999999999999999999999999988876655432 5689999999999999999999999999863
No 89
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.5e-30 Score=198.55 Aligned_cols=276 Identities=12% Similarity=0.169 Sum_probs=224.9
Q ss_pred ccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEec------Cce--------
Q 019482 31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVY------GGA-------- 96 (340)
Q Consensus 31 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~------~~~-------- 96 (340)
++.|.+..||.++ +..+...+.||.+.|+++.|++.+.++++++.|++-.||... ...
T Consensus 166 ASADhTA~iWs~E--------sg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsE 237 (481)
T KOG0300|consen 166 ASADHTARIWSLE--------SGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSE 237 (481)
T ss_pred cccccceeEEeec--------cccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCch
Confidence 6688889999998 677778899999999999999999999999999999999821 100
Q ss_pred eee-------------------eeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccce
Q 019482 97 TDI-------------------NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV 157 (340)
Q Consensus 97 ~~~-------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i 157 (340)
... .+...-.....|.+.|.+..|...|+.+++++.|.+..+||+++++.+..+.+|....
T Consensus 238 eE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~EL 317 (481)
T KOG0300|consen 238 EEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSEL 317 (481)
T ss_pred hhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhc
Confidence 000 0000001112367888899999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCeEEEeeCCCeEEEEEccCCee-EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE
Q 019482 158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (340)
Q Consensus 158 ~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 236 (340)
+.+.-+|..+++++.+.|.+.++||++..-. +..+. +|...|+++.|..+.+ ++++++|.+|++||+++...
T Consensus 318 tHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ-GHtdtVTS~vF~~dd~------vVSgSDDrTvKvWdLrNMRs 390 (481)
T KOG0300|consen 318 THCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ-GHTDTVTSVVFNTDDR------VVSGSDDRTVKVWDLRNMRS 390 (481)
T ss_pred cccccCCcceEEEEeccCceeEeccchhhcceeeeec-ccccceeEEEEecCCc------eeecCCCceEEEeeeccccC
Confidence 9999999999999999999999999985433 44455 4556899999999988 79999999999999998764
Q ss_pred EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEee---cccccccccceeeEEEecCC--eEEEEEecCCc
Q 019482 237 IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH---WSKRLHLGTSIALVEFCPTQ--RVVLTASKEWG 311 (340)
Q Consensus 237 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~ 311 (340)
.........+++.++.+..+..|+.-..+..|++||+......+ ....+| ...|.+++|..+- .-|++++.|..
T Consensus 391 plATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgH-rRMV~c~AW~eehp~cnLftcGFDR~ 469 (481)
T KOG0300|consen 391 PLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGH-RRMVTCCAWLEEHPACNLFTCGFDRM 469 (481)
T ss_pred cceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccccc-ceeeeeeeccccCcccccccccccce
Confidence 33333345689999999988899999999999999998765443 334566 5789999998654 45899999999
Q ss_pred EEEEEecCCCC
Q 019482 312 AMITKLTVPAD 322 (340)
Q Consensus 312 i~iw~~~~~~~ 322 (340)
+.-|++..|..
T Consensus 470 v~gW~in~p~~ 480 (481)
T KOG0300|consen 470 VAGWKINTPTS 480 (481)
T ss_pred eeeeEecccCC
Confidence 99999988763
No 90
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=9.5e-30 Score=202.63 Aligned_cols=291 Identities=14% Similarity=0.139 Sum_probs=222.2
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCC--cccC---------CeeeEEEecCCCCeeEEEE
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS--VYTS---------PLVTYVFDESEGDPMTIAV 71 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~--~~~~---------~~~~~~~~~h~~~v~~~~~ 71 (340)
+.-+|+|++++|+.. .+..++ .++.|.-|........ ..+. +..... ++|.+.+.+++.
T Consensus 141 H~~s~~~vals~d~~---~~fsas------k~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil~~av 210 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDK---RVFSAS------KDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEILTLAV 210 (479)
T ss_pred ccCcceEEEeecccc---ceeecC------CCcceeeeehhcCcccccccccchhhhhccCCCCccc-ccccceeEEEEE
Confidence 456889999999543 344333 4455777766432211 1111 111111 489999999999
Q ss_pred cCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccc
Q 019482 72 NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP 151 (340)
Q Consensus 72 ~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 151 (340)
++||+|||+|+.|..|.||+.++.+....+. .|.+.|.+++|-.....+++++.|..|++|+++....+..+.
T Consensus 211 S~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~-------ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 211 SSDGKYLATGGRDRHVQIWDCDTLEHVKVFK-------GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred cCCCcEEEecCCCceEEEecCcccchhhccc-------ccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh
Confidence 9999999999999999999999988766543 388999999999888899999999999999999999999999
Q ss_pred cCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEEC
Q 019482 152 KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231 (340)
Q Consensus 152 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~ 231 (340)
+|++.|..+....-.+.+-+|+.|+++++|++..... .+...+.+.+.|++|-.+.. +++++++|.|.+|++
T Consensus 284 GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq--lifrg~~~sidcv~~In~~H------fvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 284 GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ--LIFRGGEGSIDCVAFINDEH------FVSGSDNGSIALWSL 355 (479)
T ss_pred CCccceeeechhcccceEEeccccceeEEEeccccce--eeeeCCCCCeeeEEEecccc------eeeccCCceEEEeee
Confidence 9999999999888888788888999999999954333 23334556899999998877 799999999999999
Q ss_pred CCCcEEeeeecc------------CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce-EeecccccccccceeeEEEec
Q 019482 232 STWNKIGHKRLL------------RKPASVLSISLDGKYLAMGSKDGDICVVDVKKME-INHWSKRLHLGTSIALVEFCP 298 (340)
Q Consensus 232 ~~~~~~~~~~~~------------~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~i~~~~~~~ 298 (340)
.+.+++...... +..|++++..|...++++|+.+|.|++|-+..+- .+..+......+-|++++|++
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~ 435 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSN 435 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEcc
Confidence 998877654321 1278999999999999999999999999998762 222222222356899999999
Q ss_pred CCeEE-EEEecCCcEEEEEec
Q 019482 299 TQRVV-LTASKEWGAMITKLT 318 (340)
Q Consensus 299 ~~~~l-~~~~~dg~i~iw~~~ 318 (340)
+|+.+ +..+....+-=|-..
T Consensus 436 sgk~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 436 SGKRIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred CCCEEEEecccccccceeeEe
Confidence 99854 455555555445444
No 91
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=4.2e-30 Score=204.40 Aligned_cols=261 Identities=13% Similarity=0.146 Sum_probs=201.2
Q ss_pred CCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCccc--CCeeeEEEecCCCCeeEEEEcCCCC-eE
Q 019482 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT--SPLVTYVFDESEGDPMTIAVNPSGD-DF 78 (340)
Q Consensus 2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~-~l 78 (340)
.+.+.|.-+...|... .++|+++ ..+.+.||++......... +..+...|.+|++.-++++|++... +|
T Consensus 122 ~h~gEVnRaRymPQnp--~iVAt~t------~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~L 193 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNP--NIVATKT------SSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTL 193 (422)
T ss_pred cCCccchhhhhCCCCC--cEEEecC------CCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeE
Confidence 3456777778888644 6677555 4556999999755443332 3455678999999999999999554 88
Q ss_pred EEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCC--CCceeeccccCcc
Q 019482 79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWP--SLRIILDEPKAHK 155 (340)
Q Consensus 79 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~--~~~~~~~~~~~~~ 155 (340)
++++.|++|.+||+................-.|...|..++|++ +..+|++++.|+.+.|||++ +.+.......|..
T Consensus 194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~ 273 (422)
T KOG0264|consen 194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA 273 (422)
T ss_pred eeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence 99999999999999865543222222222235889999999999 56688999999999999999 4555566667788
Q ss_pred ceeEEEecC-CCCeEEEeeCCCeEEEEEccCCe-eEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC
Q 019482 156 SVLDMDFSL-DSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (340)
Q Consensus 156 ~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 233 (340)
.+.|++|+| ++..||+||.|++|++||+|+.. ++..+. .|+..|..+.|+|....+ +++++.|+.+.+||+..
T Consensus 274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e-~H~dev~~V~WSPh~etv----LASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE-GHEDEVFQVEWSPHNETV----LASSGTDRRLNVWDLSR 348 (422)
T ss_pred ceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc-CCCcceEEEEeCCCCCce----eEecccCCcEEEEeccc
Confidence 999999999 67789999999999999999854 455555 556789999999998764 78899999999999874
Q ss_pred Cc--------------EEeeeeccCCCeeEEEECCCCC-EEEEeeCCCcEEEEeccC
Q 019482 234 WN--------------KIGHKRLLRKPASVLSISLDGK-YLAMGSKDGDICVVDVKK 275 (340)
Q Consensus 234 ~~--------------~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~ 275 (340)
-. .+..-.+|...|..+.|+|+.. .|++.++|+.+.||....
T Consensus 349 ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 349 IGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 22 2344567788899999999765 577789999999998753
No 92
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.6e-29 Score=201.45 Aligned_cols=291 Identities=16% Similarity=0.177 Sum_probs=231.0
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCC-eEEEE
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCS 81 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~ 81 (340)
..++|+|+.|+|... .+++ +|.++.++||.++.+.+... ..+.-...+|.+.+|.|+|. .++++
T Consensus 212 s~~~I~sv~FHp~~p--lllv-------aG~d~~lrifqvDGk~N~~l------qS~~l~~fPi~~a~f~p~G~~~i~~s 276 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAP--LLLV-------AGLDGTLRIFQVDGKVNPKL------QSIHLEKFPIQKAEFAPNGHSVIFTS 276 (514)
T ss_pred CcCCceEEEecCCCc--eEEE-------ecCCCcEEEEEecCccChhh------eeeeeccCccceeeecCCCceEEEec
Confidence 457899999999544 4444 45777899999997765432 22222457899999999999 88999
Q ss_pred ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEE
Q 019482 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (340)
Q Consensus 82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~ 161 (340)
+....++.||+.+.+....-... -.....+.....+|++++|+..+..|.|.+....+++.+..+. -.+.|..++
T Consensus 277 ~rrky~ysyDle~ak~~k~~~~~----g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~ 351 (514)
T KOG2055|consen 277 GRRKYLYSYDLETAKVTKLKPPY----GVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFT 351 (514)
T ss_pred ccceEEEEeeccccccccccCCC----CcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEE
Confidence 99999999999877643221110 0113467778899999999999999999999999988776653 456899999
Q ss_pred ecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC------Cc
Q 019482 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST------WN 235 (340)
Q Consensus 162 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~------~~ 235 (340)
|+.+++.|++++.+|.|.+||++...++..+.....-.-++++.++++.+ +++|+..|.|.|||..+ .+
T Consensus 352 fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~y-----lA~GS~~GiVNIYd~~s~~~s~~Pk 426 (514)
T KOG2055|consen 352 FSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSY-----LATGSDSGIVNIYDGNSCFASTNPK 426 (514)
T ss_pred EecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCce-----EEeccCcceEEEeccchhhccCCCC
Confidence 99999999999999999999999999999887544434567888899997 89999999999999764 45
Q ss_pred EEeeeeccCCCeeEEEECCCCCEEEEeeC--CCcEEEEeccCceEeecccccc-cccceeeEEEecCCeEEEEEecCCcE
Q 019482 236 KIGHKRLLRKPASVLSISLDGKYLAMGSK--DGDICVVDVKKMEINHWSKRLH-LGTSIALVEFCPTQRVVLTASKEWGA 312 (340)
Q Consensus 236 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i 312 (340)
++..+......|+++.|+||++.||.++. +..+++-.+.+......+.... .-..+++++|+|.+.+||.|..+|.+
T Consensus 427 Pik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv 506 (514)
T KOG2055|consen 427 PIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRV 506 (514)
T ss_pred chhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCce
Confidence 66666666778999999999999998875 5789999988877655443221 12479999999999999999999999
Q ss_pred EEEEec
Q 019482 313 MITKLT 318 (340)
Q Consensus 313 ~iw~~~ 318 (340)
.+|.+.
T Consensus 507 ~l~kL~ 512 (514)
T KOG2055|consen 507 HLFKLH 512 (514)
T ss_pred eeEeec
Confidence 999984
No 93
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=2.7e-29 Score=199.81 Aligned_cols=307 Identities=12% Similarity=0.124 Sum_probs=221.3
Q ss_pred ceeEEeeeeecCCCc-------cEEEEcCCCCcccCCCceEEEEeCCCCCC-------ccc-----------C-CeeeEE
Q 019482 5 GTVTCGSWIKRPENV-------NLVVLGKSSRASSSPSVLEIFSFDPKTTS-------VYT-----------S-PLVTYV 58 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~-------~~~~~g~~~~~~~~~~~i~i~~~~~~~~~-------~~~-----------~-~~~~~~ 58 (340)
.|-..+.|.|+.... +.++.|.... ++.++.+.|-++...... +.. . ......
T Consensus 41 WPSLt~qWlPd~~~~~~~~~~~~rliLGthTs-~~~~n~L~iA~v~lp~~~~~~~~~~~~~e~~e~~g~~~~~~~v~i~~ 119 (422)
T KOG0264|consen 41 WPSLTVQWLPDVTKPEEKDFSKQRLILGTHTS-GSEQNYLVIASVQLPTDDAQFEDKHYDEERGEFGGFGAVSGKVEISQ 119 (422)
T ss_pred ccceEEEEcCCcccccCCCceeEEEEEEeecC-CCCccEEEEEeecCCCcccccccccccccccccCCccccccceEEEE
Confidence 466789999963221 3445555422 336777777754311100 000 0 111122
Q ss_pred EecCCCCeeEEEEcCCCC-eEEEEecCCCEEEEEecCceeeeeecc---ccCCCCCCCCCeEEEEEecCC-CeEEEccCC
Q 019482 59 FDESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLA---KKMPPLQDAGPQKCLSFSVDG-SRFAAGGVD 133 (340)
Q Consensus 59 ~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d 133 (340)
.--|.+.|+.+.+.|+.. .+|+.+..+.+.|||............ .......|...-++++|++.. -.|++++.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 235899999999999765 556677788999999976543222111 111122366667889999943 388999999
Q ss_pred CcEEEEeCCCCce-------eeccccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccC--CeeEEEeecCCCCceeeE
Q 019482 134 GHLRIMHWPSLRI-------ILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTED--GVAWTFLTRNSDEKIELC 203 (340)
Q Consensus 134 g~i~~~d~~~~~~-------~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~--~~~~~~~~~~~~~~v~~~ 203 (340)
++|.+||+..... ...+.+|...|..++|++ +...|++++.|+.+.|||+|+ .++..... .|.+.+.|+
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~-ah~~~vn~~ 278 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK-AHSAEVNCV 278 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc-ccCCceeEE
Confidence 9999999975332 344667778999999999 667899999999999999995 34434443 566789999
Q ss_pred EEccCCCcceEEEEEecCCcceEEEEECCCCc-EEeeeeccCCCeeEEEECCC-CCEEEEeeCCCcEEEEeccCceEee-
Q 019482 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEINH- 280 (340)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~- 280 (340)
+|+|-+..+ +++++.|++|.+||+|+.+ ++..+..|+..|..+.|+|+ ...|++++.|+.+.+||+..-...+
T Consensus 279 ~fnp~~~~i----lAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~ 354 (422)
T KOG0264|consen 279 AFNPFNEFI----LATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS 354 (422)
T ss_pred EeCCCCCce----EEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence 999998764 7899999999999999865 67788999999999999996 5788899999999999997522111
Q ss_pred ------------cccccccccceeeEEEecCCe-EEEEEecCCcEEEEEec
Q 019482 281 ------------WSKRLHLGTSIALVEFCPTQR-VVLTASKEWGAMITKLT 318 (340)
Q Consensus 281 ------------~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iw~~~ 318 (340)
..-.+| ...|..+.|+|+.. .|++.+.|+.+.||++.
T Consensus 355 ~eda~dgppEllF~HgGH-~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 355 PEDAEDGPPELLFIHGGH-TAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred hhhhccCCcceeEEecCc-ccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 222345 57899999999885 57789999999999986
No 94
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.7e-30 Score=204.27 Aligned_cols=241 Identities=15% Similarity=0.167 Sum_probs=199.1
Q ss_pred CCCeeEEEEcCCCC-eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC
Q 019482 63 EGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (340)
Q Consensus 63 ~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~ 141 (340)
.+.|.+++|+|... -+|+++.-+ +.||+..+......+.. ....|+++.|-.||++|++|...|.|++||+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~r-vqly~~~~~~~~k~~sr-------Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~ 97 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVR-VQLYSSVTRSVRKTFSR-------FKDVVYSVDFRSDGRLLAAGDESGHVKVFDM 97 (487)
T ss_pred cCcceeEecCCCCCCceEEecccE-EEEEecchhhhhhhHHh-------hccceeEEEeecCCeEEEccCCcCcEEEecc
Confidence 46799999999665 455555544 99999887665444432 4478999999999999999999999999997
Q ss_pred CCCceeeccccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEec
Q 019482 142 PSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR 220 (340)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 220 (340)
.+...+..+..|..++..+.|+| ++..+++|++|+.+++||+.+......+. .|...|.+.+|+|....+ +++|
T Consensus 98 k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~-~htDYVR~g~~~~~~~hi----vvtG 172 (487)
T KOG0310|consen 98 KSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS-GHTDYVRCGDISPANDHI----VVTG 172 (487)
T ss_pred ccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec-CCcceeEeeccccCCCeE----EEec
Confidence 77667777888989999999999 55678899999999999999888754565 455689999999988764 7999
Q ss_pred CCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCC
Q 019482 221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300 (340)
Q Consensus 221 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 300 (340)
+.|+.|++||++.......-..|+.+|..+.+-|.|..+++++. +.+++||+.+|..+......| ...|+++.+..++
T Consensus 173 sYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H-~KtVTcL~l~s~~ 250 (487)
T KOG0310|consen 173 SYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNH-NKTVTCLRLASDS 250 (487)
T ss_pred CCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcc-cceEEEEEeecCC
Confidence 99999999999987544445568889999999999999999875 579999999655544443446 5799999999999
Q ss_pred eEEEEEecCCcEEEEEec
Q 019482 301 RVVLTASKEWGAMITKLT 318 (340)
Q Consensus 301 ~~l~~~~~dg~i~iw~~~ 318 (340)
..|+++|-|+.+++|++.
T Consensus 251 ~rLlS~sLD~~VKVfd~t 268 (487)
T KOG0310|consen 251 TRLLSGSLDRHVKVFDTT 268 (487)
T ss_pred ceEeecccccceEEEEcc
Confidence 999999999999999953
No 95
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=2.4e-30 Score=196.59 Aligned_cols=274 Identities=12% Similarity=0.141 Sum_probs=210.0
Q ss_pred eEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCce---eeeeecccc--------CCCCCCCCCeEEEEEecCC
Q 019482 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA---TDINLLAKK--------MPPLQDAGPQKCLSFSVDG 124 (340)
Q Consensus 56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~---~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~ 124 (340)
...+..|+.++.+.+|+|||.++|+|+.|..|+|.|++..- ......... .....|..+|+++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 45578899999999999999999999999999999987210 111111000 1123478999999999999
Q ss_pred CeEEEccCCCcEEEEeCCCCce--eeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee--cCCCCce
Q 019482 125 SRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKI 200 (340)
Q Consensus 125 ~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~~~v 200 (340)
..|++++.|++|++||+..... ..+......+|.++.|+|.|.+|+.|..-.++++||+.+-++...-. ..+.+.|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 9999999999999999875432 22333445689999999999999999999999999999988765443 3456789
Q ss_pred eeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee-cc-CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE
Q 019482 201 ELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LL-RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI 278 (340)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~-~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 278 (340)
+++.+++.++. -++++.||.|++||--+++++..+. .| +..|.+..|..+|+|+++.+.|..+++|.+.++++
T Consensus 265 ~~V~Ys~t~~l-----YvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 265 TQVRYSSTGSL-----YVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred eEEEecCCccE-----EEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 99999999996 6899999999999999988877664 33 35799999999999999999999999999999999
Q ss_pred eeccccccc---ccceeeEEEecCCeEEEEEec-CCcEEEEEecCCCCCCCCcccccccccc
Q 019482 279 NHWSKRLHL---GTSIALVEFCPTQRVVLTASK-EWGAMITKLTVPADWKGLSLPLLHSHSQ 336 (340)
Q Consensus 279 ~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~h~~~v 336 (340)
+..+..... ...-+...|+....+++.-.+ .+.+.-||-..... .......|.+.+
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr--~~l~slgHn~a~ 399 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR--VALLSLGHNGAV 399 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhh--hhhcccCCCCCc
Confidence 877643311 123355667777777666543 46677777765442 333455565554
No 96
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.9e-29 Score=189.17 Aligned_cols=272 Identities=12% Similarity=0.114 Sum_probs=210.7
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
+...|.+++|+|... .+++. ++-|+++++|+++..+... + .....|.++|.+++|+.||..+++|+
T Consensus 26 P~DsIS~l~FSP~~~--~~~~A------~SWD~tVR~wevq~~g~~~---~---ka~~~~~~PvL~v~WsddgskVf~g~ 91 (347)
T KOG0647|consen 26 PEDSISALAFSPQAD--NLLAA------GSWDGTVRIWEVQNSGQLV---P---KAQQSHDGPVLDVCWSDDGSKVFSGG 91 (347)
T ss_pred cccchheeEeccccC--ceEEe------cccCCceEEEEEecCCccc---c---hhhhccCCCeEEEEEccCCceEEeec
Confidence 446789999999432 55543 4589999999998653222 1 33456899999999999999999999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCC--eEEEccCCCcEEEEeCCCCceeeccccCccceeEE
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS--RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~ 160 (340)
.|+.+++||+.+++.. .+. .|.++|.++.|-+... .|++|+.|++|+.||++...++..+ ...+.+.++
T Consensus 92 ~Dk~~k~wDL~S~Q~~-~v~-------~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~-~LPeRvYa~ 162 (347)
T KOG0647|consen 92 CDKQAKLWDLASGQVS-QVA-------AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL-QLPERVYAA 162 (347)
T ss_pred cCCceEEEEccCCCee-eee-------ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee-eccceeeeh
Confidence 9999999999998543 222 3889999999988655 8999999999999999988777655 345567766
Q ss_pred EecCCCCeEEEeeCCCeEEEEEccCCeeE-EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC--cEE
Q 019482 161 DFSLDSEFLATTSTDGSARIWKTEDGVAW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW--NKI 237 (340)
Q Consensus 161 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~--~~~ 237 (340)
..- ..+++.+..+..|.+|+++++... +......+-.+++++..++... .+.++-+|.+.+..++.+ +.-
T Consensus 163 Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~-----~alGsiEGrv~iq~id~~~~~~n 235 (347)
T KOG0647|consen 163 DVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG-----FALGSIEGRVAIQYIDDPNPKDN 235 (347)
T ss_pred hcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCc-----eEeeeecceEEEEecCCCCccCc
Confidence 654 567888888999999999765432 2233334456899999998876 577888999999888876 333
Q ss_pred eeeeccC---------CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEE
Q 019482 238 GHKRLLR---------KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA 306 (340)
Q Consensus 238 ~~~~~~~---------~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 306 (340)
..++.|. ..|++++|+|.-..|++++.||...+||-.....+.... .| ..+|++.+|+.+|.++|-+
T Consensus 236 FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~-~~-~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 236 FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE-TH-PQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred eeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccC-cC-CCccceeEecCCCCEEEEE
Confidence 3455554 257889999999999999999999999988777666543 34 5799999999999988754
No 97
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.7e-30 Score=189.16 Aligned_cols=264 Identities=13% Similarity=0.130 Sum_probs=204.3
Q ss_pred EecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec--CCCeEEEccCCCcE
Q 019482 59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHL 136 (340)
Q Consensus 59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i 136 (340)
-..|++.|..+...-.|++||+++.|++|+|+.++.+.....+. ....|.+||..++|.. -|..|++++.||.|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~----~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkV 82 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLA----ELTGHSGPVWKVAWAHPKFGTILASCSYDGKV 82 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeee----EecCCCCCeeEEeecccccCcEeeEeecCceE
Confidence 45699999999888889999999999999999998765422221 1124899999999976 79999999999999
Q ss_pred EEEeCCCCc--eeeccccCccceeEEEecCC--CCeEEEeeCCCeEEEEEccCC--eeEEEeecCCCCceeeEEEccC--
Q 019482 137 RIMHWPSLR--IILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDG--VAWTFLTRNSDEKIELCRFSKD-- 208 (340)
Q Consensus 137 ~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~-- 208 (340)
.||.-++++ .......|...|++++|.|. |-.|++++.||.|.|.+.+.. -....+...|.-.+++++|.|.
T Consensus 83 IiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~ 162 (299)
T KOG1332|consen 83 IIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA 162 (299)
T ss_pred EEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence 999987764 23344566779999999984 567999999999999998754 2233334455567999999986
Q ss_pred -CCc------ceEEEEEecCCcceEEEEECCCCc--EEeeeeccCCCeeEEEECCCC----CEEEEeeCCCcEEEEeccC
Q 019482 209 -GTK------PFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRKPASVLSISLDG----KYLAMGSKDGDICVVDVKK 275 (340)
Q Consensus 209 -~~~------~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~----~~l~~~~~dg~i~i~d~~~ 275 (340)
|.. --..-+++++.|+.|+||+..+++ ....+..|...++.++|.|.- .+|+++++||++.||....
T Consensus 163 ~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred CccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 310 001127999999999999998753 445588999999999999953 5899999999999998763
Q ss_pred c--eEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCc
Q 019482 276 M--EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLS 327 (340)
Q Consensus 276 ~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 327 (340)
. +-...+.... ...+..+.||+.|+.|+.++.|+.+.+|.-+...+|++..
T Consensus 243 e~e~wk~tll~~f-~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v~ 295 (299)
T KOG1332|consen 243 EYEPWKKTLLEEF-PDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEEVG 295 (299)
T ss_pred ccCcccccccccC-CcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEEcc
Confidence 2 1111222222 4689999999999999999999999999988888776543
No 98
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.1e-29 Score=190.57 Aligned_cols=245 Identities=16% Similarity=0.214 Sum_probs=190.3
Q ss_pred CCCCeeEEEEcC-CCCeEEEEecCCCEEEEEecCc-eeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEE
Q 019482 62 SEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGG-ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (340)
Q Consensus 62 h~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 139 (340)
.++.|.+++||| ....+++++.|++||+|+++.. ....+ ....|.++|.+++|+.||..+++|+.|+.+++|
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k------a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK------AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW 99 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccch------hhhccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence 356799999999 4556669999999999999874 22211 122488999999999999999999999999999
Q ss_pred eCCCCceeeccccCccceeEEEecCCCC--eEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEE
Q 019482 140 HWPSLRIILDEPKAHKSVLDMDFSLDSE--FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT 217 (340)
Q Consensus 140 d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 217 (340)
|+.+++. ..+-.|..+|..+.|-+... .|+|||.|.+|+.||.+...++.++... +.++++..-.. . +
T Consensus 100 DL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP--eRvYa~Dv~~p--m-----~ 169 (347)
T KOG0647|consen 100 DLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP--ERVYAADVLYP--M-----A 169 (347)
T ss_pred EccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc--ceeeehhccCc--e-----e
Confidence 9999854 45667888999999987554 8999999999999999999998888643 45666654322 2 5
Q ss_pred EecCCcceEEEEECCCCcEEee--eeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEee-ccccccc-------
Q 019482 218 VQRGDKALLAVYDISTWNKIGH--KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH-WSKRLHL------- 287 (340)
Q Consensus 218 ~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~------- 287 (340)
+.+..++.|.+|+++++..+.. ....+..+++++..+|....+.|+-+|.+.|..+..+.+.. .....|.
T Consensus 170 vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~ 249 (347)
T KOG0647|consen 170 VVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND 249 (347)
T ss_pred EEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCC
Confidence 6677788999999987653211 12234568899999988888999999999999887752211 1112232
Q ss_pred -ccceeeEEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482 288 -GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD 322 (340)
Q Consensus 288 -~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (340)
--.|++++|+|.-..|+|+|.||++.+||-+....
T Consensus 250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~k 285 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTK 285 (347)
T ss_pred ceEEecceEeecccceEEEecCCceEEEecchhhhh
Confidence 13689999999999999999999999999876654
No 99
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=1.4e-28 Score=186.66 Aligned_cols=269 Identities=15% Similarity=0.144 Sum_probs=209.9
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
+..-|.++.|+|.. ..||| +..|+.+++|+++... +...+ .|..++.+++|.+ ...+++|+
T Consensus 12 P~d~IS~v~f~~~~--~~LLv-------ssWDgslrlYdv~~~~--------l~~~~-~~~~plL~c~F~d-~~~~~~G~ 72 (323)
T KOG1036|consen 12 PEDGISSVKFSPSS--SDLLV-------SSWDGSLRLYDVPANS--------LKLKF-KHGAPLLDCAFAD-ESTIVTGG 72 (323)
T ss_pred ChhceeeEEEcCcC--CcEEE-------EeccCcEEEEeccchh--------hhhhe-ecCCceeeeeccC-CceEEEec
Confidence 45668999999653 36777 7799999999998441 11222 3789999999986 55799999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 162 (340)
-||.|+.+|+.++..... ..|..+|.|+.+++....+++|+.|++|++||.+.......+ ...+.|.++..
T Consensus 73 ~dg~vr~~Dln~~~~~~i--------gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~-d~~kkVy~~~v 143 (323)
T KOG1036|consen 73 LDGQVRRYDLNTGNEDQI--------GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF-DQGKKVYCMDV 143 (323)
T ss_pred cCceEEEEEecCCcceee--------ccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccc-ccCceEEEEec
Confidence 999999999998764322 138899999999998889999999999999999874444333 33448888887
Q ss_pred cCCCCeEEEeeCCCeEEEEEccCCeeEEEe-ecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC----cEE
Q 019482 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFL-TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW----NKI 237 (340)
Q Consensus 163 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~----~~~ 237 (340)
. ++.|++|..|..+.+||+++.....+. ....+-.+.++++-|++.- .+.++-||.+.+=.++.. +..
T Consensus 144 ~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG-----y~~sSieGRVavE~~d~s~~~~skk 216 (323)
T KOG1036|consen 144 S--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG-----YVVSSIEGRVAVEYFDDSEEAQSKK 216 (323)
T ss_pred c--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCc-----eEEEeecceEEEEccCCchHHhhhc
Confidence 6 788999999999999999986554322 2233457899999997765 577788998887666544 233
Q ss_pred eeeeccC---------CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEec
Q 019482 238 GHKRLLR---------KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK 308 (340)
Q Consensus 238 ~~~~~~~---------~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 308 (340)
..++.|. .+|++++|+|-...|++|+.||.|.+||+.+.+.+..+... ...|.+++|+.||..||.++.
T Consensus 217 yaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 217 YAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEEec
Confidence 4455553 47999999999999999999999999999998888776433 357999999999999999874
No 100
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.8e-29 Score=196.47 Aligned_cols=202 Identities=37% Similarity=0.576 Sum_probs=173.2
Q ss_pred EEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee-c
Q 019482 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT-R 194 (340)
Q Consensus 116 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~ 194 (340)
.+++|+.+|..+++++.||++|+|+.++...+.....|+..|.++.|+|||++|++.+.| ..+||+.+++..+.... .
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999999888888888999999999999999999999999 99999999997777665 3
Q ss_pred CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE-----EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEE
Q 019482 195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK-----IGHKRLLRKPASVLSISLDGKYLAMGSKDGDIC 269 (340)
Q Consensus 195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 269 (340)
..+.....+.|+.++....+.+++.....+.|+.||+..+.- ..........|++++.+++|++++.|+.||.|-
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 344567889999888555565566667777788877764432 111222235799999999999999999999999
Q ss_pred EEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482 270 VVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 270 i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
|++..+.+.++..+..| ...|+.+.|+||.+++++.+.|....|..+..
T Consensus 307 i~~~~~lq~~~~vk~aH-~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAH-LGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEeceeeeeEeehhhh-eeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999999999999999 56999999999999999999999999999876
No 101
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=6.8e-29 Score=213.38 Aligned_cols=252 Identities=14% Similarity=0.164 Sum_probs=212.8
Q ss_pred cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeee-eccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEE
Q 019482 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN-LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (340)
Q Consensus 61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 139 (340)
.|...+.+..|+ +.++++++.+.+|++|+...+..... +. .|.+.|.++++..-+.++++|+.|.++++|
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~-------GH~g~V~~l~~~~~~~~lvsgS~D~t~rvW 276 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLV-------GHFGGVWGLAFPSGGDKLVSGSTDKTERVW 276 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeecc-------CCCCCceeEEEecCCCEEEEEecCCcEEeE
Confidence 356678889997 66899999999999999998876655 33 488999999998777899999999999999
Q ss_pred eCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEe
Q 019482 140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (340)
Q Consensus 140 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 219 (340)
|..++++...+.+|.+.+.++... ...+++|+.|.+|++|+++++..+..+.+ |.++|.++..+ +.. +++
T Consensus 277 d~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~-h~~~V~~v~~~--~~~-----lvs 346 (537)
T KOG0274|consen 277 DCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRG-HTGPVNCVQLD--EPL-----LVS 346 (537)
T ss_pred ecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecc-ccccEEEEEec--CCE-----EEE
Confidence 999999999999999999988876 45688899999999999999999998876 67899999998 444 799
Q ss_pred cCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCc-eEeecccccccccceeeEEEec
Q 019482 220 RGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM-EINHWSKRLHLGTSIALVEFCP 298 (340)
Q Consensus 220 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~i~~~~~~~ 298 (340)
++.|+.|++||+.++++++.+.+|...|.++.+.+. ..+++|+.|+.|++||+++. +++..+ ..| ..-+..+.+
T Consensus 347 gs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl-~~h-~~~v~~l~~-- 421 (537)
T KOG0274|consen 347 GSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL-QGH-TSLVSSLLL-- 421 (537)
T ss_pred EecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh-cCC-ccccccccc--
Confidence 999999999999999999999999999999988665 89999999999999999999 777766 345 456655544
Q ss_pred CCeEEEEEecCCcEEEEEecCCCCCCCCccccc-cccccccC
Q 019482 299 TQRVVLTASKEWGAMITKLTVPADWKGLSLPLL-HSHSQNSV 339 (340)
Q Consensus 299 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-h~~~v~~v 339 (340)
.+++|++++.|+.|++||....+. ...... |...|.++
T Consensus 422 ~~~~Lvs~~aD~~Ik~WD~~~~~~---~~~~~~~~~~~v~~l 460 (537)
T KOG0274|consen 422 RDNFLVSSSADGTIKLWDAEEGEC---LRTLEGRHVGGVSAL 460 (537)
T ss_pred ccceeEeccccccEEEeecccCce---eeeeccCCcccEEEe
Confidence 568999999999999999876653 333333 55555544
No 102
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=5.4e-28 Score=205.66 Aligned_cols=195 Identities=16% Similarity=0.119 Sum_probs=174.1
Q ss_pred CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeecc---ccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeE
Q 019482 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE---PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW 189 (340)
Q Consensus 113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~ 189 (340)
..+++++.++.|++.+.|+..|.|-+|++++|-....+ +.|..+|+.++...-++.+++++.+|-+++||+.+...+
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~ 528 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK 528 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence 67889999999999999999999999999998877666 467789999999988899999999999999999988888
Q ss_pred EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEE
Q 019482 190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDIC 269 (340)
Q Consensus 190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 269 (340)
..+.... .+..+..+..... ++.+.+|-.|+++|..+.+.++.+.+|...|++++|||||++|++++.|++|+
T Consensus 529 ~~l~l~~--~~~~iv~hr~s~l-----~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr 601 (910)
T KOG1539|consen 529 KSLRLGS--SITGIVYHRVSDL-----LAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIR 601 (910)
T ss_pred eeeccCC--Ccceeeeeehhhh-----hhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEE
Confidence 8776443 5778888877765 67788899999999999999999999999999999999999999999999999
Q ss_pred EEeccCceEeecccccccccceeeEEEecCCeEEEEEecC-CcEEEEEe
Q 019482 270 VVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-WGAMITKL 317 (340)
Q Consensus 270 i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~iw~~ 317 (340)
+||+.++.++-.+.. ..+++++.|+|+|.+||+...| ..|++|.=
T Consensus 602 ~wDlpt~~lID~~~v---d~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 602 TWDLPTGTLIDGLLV---DSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred EEeccCcceeeeEec---CCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 999999998876533 5789999999999999999998 78999963
No 103
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.8e-29 Score=189.37 Aligned_cols=254 Identities=14% Similarity=0.203 Sum_probs=192.0
Q ss_pred CeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeee---------------------------------
Q 019482 53 PLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI--------------------------------- 99 (340)
Q Consensus 53 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~--------------------------------- 99 (340)
|.....|++|.+.|++++|+.||++|++++.|+.|++|++++.....
T Consensus 76 pl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 76 PLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred chhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCC
Confidence 34455789999999999999999999999999999999987643100
Q ss_pred -----eecccc-------C-------CCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEE
Q 019482 100 -----NLLAKK-------M-------PPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (340)
Q Consensus 100 -----~~~~~~-------~-------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~ 160 (340)
....+. . ..-.|...+..+-...++.+|++++.|..|.+|+++ |+.+..+......-+..
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a 234 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA 234 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence 000000 0 001133445555555677899999999999999998 77777666555567788
Q ss_pred EecCCCCeEEEeeCCCeEEEEEcc---CC-----eeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC
Q 019482 161 DFSLDSEFLATTSTDGSARIWKTE---DG-----VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (340)
Q Consensus 161 ~~~~~~~~l~~~~~d~~v~iwd~~---~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~ 232 (340)
+.+|+|+++++++..--|++|.+- .| ..+..+.+ |...|..++|+++..+ +++.+.||.+++||++
T Consensus 235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG-H~saV~~~aFsn~S~r-----~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG-HQSAVLAAAFSNSSTR-----AVTVSKDGKWRIWDTD 308 (420)
T ss_pred eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc-chhheeeeeeCCCcce-----eEEEecCCcEEEeecc
Confidence 999999999999988899999863 22 22344554 4567999999999998 8999999999999986
Q ss_pred CC----c---EEeee----eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCe
Q 019482 233 TW----N---KIGHK----RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (340)
Q Consensus 233 ~~----~---~~~~~----~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 301 (340)
-. + .++.. ....+.-..+.++|+|+.|+... ...+++|..++++....++..| +..|.+++|+++|+
T Consensus 309 VrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h-~~~Is~is~~~~g~ 386 (420)
T KOG2096|consen 309 VRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIH-STTISSISYSSDGK 386 (420)
T ss_pred ceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhh-cCceeeEEecCCCc
Confidence 31 1 11111 11223445899999999998875 4569999999999998888888 68999999999999
Q ss_pred EEEEEecCCcEEEEE
Q 019482 302 VVLTASKEWGAMITK 316 (340)
Q Consensus 302 ~l~~~~~dg~i~iw~ 316 (340)
++++++ |..+++..
T Consensus 387 ~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 387 YIATCG-DRYVRVIR 400 (420)
T ss_pred EEeeec-ceeeeeec
Confidence 999996 56677665
No 104
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.5e-29 Score=208.26 Aligned_cols=278 Identities=11% Similarity=0.189 Sum_probs=226.3
Q ss_pred cEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCce--e
Q 019482 20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA--T 97 (340)
Q Consensus 20 ~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~--~ 97 (340)
+.+.+|| .|+.|++|++........ ......++.|.+.|+.+....+|+.|++++.|-+|++|+..... +
T Consensus 38 ryLfTgG------RDg~i~~W~~~~d~~~~s--~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c 109 (735)
T KOG0308|consen 38 RYLFTGG------RDGIIRLWSVTQDSNEPS--TPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFC 109 (735)
T ss_pred ceEEecC------CCceEEEeccccccCCcc--cchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchh
Confidence 4455555 566699999986554332 12345678899999999999999999999999999999998764 2
Q ss_pred eeeeccccCCCCCCCCCeEEEEE-ecCCCeEEEccCCCcEEEEeCCCCce--e--------eccc-cCccceeEEEecCC
Q 019482 98 DINLLAKKMPPLQDAGPQKCLSF-SVDGSRFAAGGVDGHLRIMHWPSLRI--I--------LDEP-KAHKSVLDMDFSLD 165 (340)
Q Consensus 98 ~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~--~--------~~~~-~~~~~i~~~~~~~~ 165 (340)
...+. .|...|.|+++ .++..++|+|+-|+.|.+||++++.. + ..+. ++..+|++++.++.
T Consensus 110 ~stir-------~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t 182 (735)
T KOG0308|consen 110 MSTIR-------THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT 182 (735)
T ss_pred Hhhhh-------cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc
Confidence 22221 38899999999 78888999999999999999997732 1 1222 55668999999999
Q ss_pred CCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCC
Q 019482 166 SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK 245 (340)
Q Consensus 166 ~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 245 (340)
|..|++|+..+.+++||.++++.+..+.+|. ..|..+..++||.. +++++.|++|++||+...+++.++..|..
T Consensus 183 ~t~ivsGgtek~lr~wDprt~~kimkLrGHT-dNVr~ll~~dDGt~-----~ls~sSDgtIrlWdLgqQrCl~T~~vH~e 256 (735)
T KOG0308|consen 183 GTIIVSGGTEKDLRLWDPRTCKKIMKLRGHT-DNVRVLLVNDDGTR-----LLSASSDGTIRLWDLGQQRCLATYIVHKE 256 (735)
T ss_pred ceEEEecCcccceEEeccccccceeeeeccc-cceEEEEEcCCCCe-----EeecCCCceEEeeeccccceeeeEEeccC
Confidence 9999999999999999999999999998554 57999999999998 89999999999999999999999999999
Q ss_pred CeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482 246 PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 246 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
.++++..+|+-..+++|+.||.|..=|+++......+... ..+|..+..+...+-+=+++.|+.|+=|.....
T Consensus 257 ~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~--daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 257 GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE--DAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC--CCchhhhhhccccCCceeeeccccceecCCccc
Confidence 9999999999999999999999999999885333222221 347888887755555566777888999987643
No 105
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=7.5e-29 Score=216.70 Aligned_cols=252 Identities=21% Similarity=0.286 Sum_probs=202.9
Q ss_pred CCCCeeEEEEcCCCCeEEEEe--cCCCEEEEEecCceeeeee----ccc-cCCCCCCCCCeEEEEEecCCCeEEEccCCC
Q 019482 62 SEGDPMTIAVNPSGDDFVCST--TNGGCKLFEVYGGATDINL----LAK-KMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (340)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~--~d~~i~iw~~~~~~~~~~~----~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 134 (340)
++..|.+++.+|+|..+|+|+ .|+.++||+.+.--..... ... -.....|.+.|.|+.|+|||++||+|++|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 456699999999999999999 8999999997642211110 111 112235889999999999999999999999
Q ss_pred cEEEEeCCC------------------CceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCC
Q 019482 135 HLRIMHWPS------------------LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS 196 (340)
Q Consensus 135 ~i~~~d~~~------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~ 196 (340)
.|.+|.... .+.+..+.+|...|..++|+|++.+|++++.|++|.+||.++.+.+..+..|+
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~ 171 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ 171 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccc
Confidence 999998762 12455677888899999999999999999999999999999998888888655
Q ss_pred CCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC------CCeeEEEECCCCCEEEEeeC----CC
Q 019482 197 DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR------KPASVLSISLDGKYLAMGSK----DG 266 (340)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~------~~i~~~~~s~~~~~l~~~~~----dg 266 (340)
..|..+.|.|-|++ +++-++|++|++|++.++...+.+..+- .....+.|||||++|++... -.
T Consensus 172 -s~VKGvs~DP~Gky-----~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~ 245 (942)
T KOG0973|consen 172 -SLVKGVSWDPIGKY-----FASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKS 245 (942)
T ss_pred -ccccceEECCccCe-----eeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcc
Confidence 68999999999998 8999999999999988877666555442 34678999999999998743 34
Q ss_pred cEEEEeccCceEeecccccccccceeeEEEecC-----Ce------------EEEEEecCCcEEEEEecCCC
Q 019482 267 DICVVDVKKMEINHWSKRLHLGTSIALVEFCPT-----QR------------VVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 267 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~------------~l~~~~~dg~i~iw~~~~~~ 321 (340)
.+.|.+-.+.+.-..+ .+| ..++..++|+|. .. .+|+||.|+++.||....+.
T Consensus 246 ~~~IieR~tWk~~~~L-vGH-~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 246 TIAIIERGTWKVDKDL-VGH-SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred eeEEEecCCceeeeee-ecC-CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 6888888777765555 477 569999999992 11 68899999999999986554
No 106
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.9e-29 Score=212.82 Aligned_cols=267 Identities=15% Similarity=0.172 Sum_probs=208.0
Q ss_pred CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCC
Q 019482 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWP 142 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~ 142 (340)
...+++..+++-..++.+++.- +.||.+..................-.-.+..++|+. +.++||+++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs~-lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRSL-LKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecccc-eeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 3467788888888888888764 788887654432222111011111223456788876 56799999999999999998
Q ss_pred C---CceeeccccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEE
Q 019482 143 S---LRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218 (340)
Q Consensus 143 ~---~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 218 (340)
. .+.+..+..|...+.++.|++ ..++|++|++||+|++||++..+...++... .+.|+.++|+|..... ++
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~n-SESiRDV~fsp~~~~~----F~ 193 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSN-SESIRDVKFSPGYGNK----FA 193 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccccc-chhhhceeeccCCCce----EE
Confidence 6 455667888888999999999 6678999999999999999999888888764 4679999999976542 67
Q ss_pred ecCCcceEEEEECCCCc-EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEe
Q 019482 219 QRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC 297 (340)
Q Consensus 219 ~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~ 297 (340)
++.+.|.+++||+|... +...+..|.+++.++.|+|++.+||+|+.|+.|+|||..+.+..... ..+...++..++|-
T Consensus 194 s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~-tInTiapv~rVkWR 272 (839)
T KOG0269|consen 194 SIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKH-TINTIAPVGRVKWR 272 (839)
T ss_pred EecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcccee-EEeecceeeeeeec
Confidence 88889999999999765 56678899999999999999999999999999999999875543332 23336799999999
Q ss_pred cCCe-EEEEEec--CCcEEEEEecCCCCCCCCccccccccccccC
Q 019482 298 PTQR-VVLTASK--EWGAMITKLTVPADWKGLSLPLLHSHSQNSV 339 (340)
Q Consensus 298 ~~~~-~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v 339 (340)
|+.+ .|++++. |-.|+|||+.-|- -++..+..|...++.+
T Consensus 273 P~~~~hLAtcsmv~dtsV~VWDvrRPY--IP~~t~~eH~~~vt~i 315 (839)
T KOG0269|consen 273 PARSYHLATCSMVVDTSVHVWDVRRPY--IPYATFLEHTDSVTGI 315 (839)
T ss_pred cCccchhhhhhccccceEEEEeecccc--ccceeeeccCccccce
Confidence 9875 4666654 7889999998665 4777888898887655
No 107
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.7e-29 Score=211.08 Aligned_cols=270 Identities=14% Similarity=0.159 Sum_probs=206.5
Q ss_pred ceEEEEeCCCCCCcccCCeeeEEEecCC---CCeeEEEEcC-CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCC
Q 019482 36 VLEIFSFDPKTTSVYTSPLVTYVFDESE---GDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD 111 (340)
Q Consensus 36 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 111 (340)
.+.+|.+++..... .+...++.-. -.+..+.|+. +.++||+++.+|.|.+||+........+. ..-+|
T Consensus 61 ~lklyai~~~~~~~----~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~----~f~EH 132 (839)
T KOG0269|consen 61 LLKLYAINPNDFSE----KCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLT----VFNEH 132 (839)
T ss_pred ceeeEeeCcccCCc----ceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccccchhhh----Hhhhh
Confidence 47888887655432 2222222211 2355678875 56799999999999999997631111110 11248
Q ss_pred CCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeE
Q 019482 112 AGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAW 189 (340)
Q Consensus 112 ~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~ 189 (340)
...+.++.|++ ...+|++|++||+|++||++..+....+.+..+.|.+++|+| .+..|+++...|.+++||++.....
T Consensus 133 ~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~ 212 (839)
T KOG0269|consen 133 ERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC 212 (839)
T ss_pred ccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH
Confidence 89999999998 667999999999999999999888888888778999999999 7888999999999999999976554
Q ss_pred EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec-cCCCeeEEEECCCCCE-EEEee--CC
Q 019482 190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-LRKPASVLSISLDGKY-LAMGS--KD 265 (340)
Q Consensus 190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~s~~~~~-l~~~~--~d 265 (340)
......|.++|.++.|+|++.+ +++|+.|+.|+|||..+.+....... ...++.++.|-|...+ |++++ .|
T Consensus 213 ~~k~~AH~GpV~c~nwhPnr~~-----lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~d 287 (839)
T KOG0269|consen 213 EKKLTAHNGPVLCLNWHPNREW-----LATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVD 287 (839)
T ss_pred HHHhhcccCceEEEeecCCCce-----eeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhcccc
Confidence 4444567789999999998887 89999999999999987654322222 2468999999997654 55554 37
Q ss_pred CcEEEEeccCceEeecccccccccceeeEEEec-CCeEEEEEecCCcEEEEEecC
Q 019482 266 GDICVVDVKKMEINHWSKRLHLGTSIALVEFCP-TQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 266 g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iw~~~~ 319 (340)
-.|+|||++...........| ...++.++|.. |-..+.+++.||.+....++.
T Consensus 288 tsV~VWDvrRPYIP~~t~~eH-~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 288 TSVHVWDVRRPYIPYATFLEH-TDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred ceEEEEeeccccccceeeecc-CccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 789999999887776666677 67899999965 557899999999988776654
No 108
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=4.3e-28 Score=203.31 Aligned_cols=289 Identities=15% Similarity=0.192 Sum_probs=217.1
Q ss_pred EeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCC-----------CCe
Q 019482 9 CGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-----------GDD 77 (340)
Q Consensus 9 ~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----------~~~ 77 (340)
++.|.+.+.. +.. -..|..+.+|+++...+ ......+-.|...|+.+.--|- ...
T Consensus 329 A~~Fdet~~k--lsc-------VYndhSlYvWDvrD~~k-----vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~c 394 (1080)
T KOG1408|consen 329 ACQFDETTDK--LSC-------VYNDHSLYVWDVRDVNK-----VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGC 394 (1080)
T ss_pred EEEecCCCce--EEE-------EEcCceEEEEecccccc-----ccceeeeeeccceeeeeccccccccCcccccCCccc
Confidence 5566665442 222 23566799999873321 1222344568888888776551 125
Q ss_pred EEEEecCCCEEEEEecCceee----eeecccc--------------------------CCCCCCCCCeEEEEEecCCCeE
Q 019482 78 FVCSTTNGGCKLFEVYGGATD----INLLAKK--------------------------MPPLQDAGPQKCLSFSVDGSRF 127 (340)
Q Consensus 78 l~~~~~d~~i~iw~~~~~~~~----~~~~~~~--------------------------~~~~~~~~~v~~~~~~~~~~~l 127 (340)
+++++.|++|++|+++....- ..+...+ .........+++++.+|+|++|
T Consensus 395 F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhL 474 (1080)
T KOG1408|consen 395 FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHL 474 (1080)
T ss_pred eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCccee
Confidence 889999999999999862210 0000000 0011224578999999999999
Q ss_pred EEccCCCcEEEEeCCCCceeeccccCccceeEEEecC---CCCeEEEeeCCCeEEEEEccCCee-EEEeecCCCCceee-
Q 019482 128 AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL---DSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIEL- 202 (340)
Q Consensus 128 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~- 202 (340)
++|..-|++++|++...+....+..|...|.|+.++. ..++|++++.|.-|.+||+...-. +.++. .|...|++
T Consensus 475 AsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld-~HSssITsv 553 (1080)
T KOG1408|consen 475 ASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD-GHSSSITSV 553 (1080)
T ss_pred cccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc-ccccceeEE
Confidence 9999999999999999888888888889999999975 356899999999999999864322 22222 22233444
Q ss_pred ------------------------------------------------EEEccCCCcceEEEEEecCCcceEEEEECCCC
Q 019482 203 ------------------------------------------------CRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234 (340)
Q Consensus 203 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 234 (340)
++..|..++ +++++.|..|+|||+.++
T Consensus 554 KFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~-----v~t~cQDrnirif~i~sg 628 (1080)
T KOG1408|consen 554 KFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKL-----VVTVCQDRNIRIFDIESG 628 (1080)
T ss_pred EEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcce-----EEEEecccceEEEecccc
Confidence 444444444 688899999999999999
Q ss_pred cEEeeeecc---CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCc
Q 019482 235 NKIGHKRLL---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWG 311 (340)
Q Consensus 235 ~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 311 (340)
+..+.+++. ++..-.+...|.|.|+++.+.|.++.++|+.+++++... .+| ...|+.+.|.+|-+.|++.+.||.
T Consensus 629 Kq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m-~GH-sE~VTG~kF~nDCkHlISvsgDgC 706 (1080)
T KOG1408|consen 629 KQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM-TGH-SEAVTGVKFLNDCKHLISVSGDGC 706 (1080)
T ss_pred ceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh-cCc-chheeeeeecccchhheeecCCce
Confidence 998888754 466788899999999999999999999999999999877 477 679999999999999999999999
Q ss_pred EEEEEecC
Q 019482 312 AMITKLTV 319 (340)
Q Consensus 312 i~iw~~~~ 319 (340)
|.||.+..
T Consensus 707 IFvW~lp~ 714 (1080)
T KOG1408|consen 707 IFVWKLPL 714 (1080)
T ss_pred EEEEECch
Confidence 99999975
No 109
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.7e-29 Score=208.03 Aligned_cols=247 Identities=17% Similarity=0.203 Sum_probs=205.2
Q ss_pred EEEEc-CCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC--
Q 019482 68 TIAVN-PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-- 144 (340)
Q Consensus 68 ~~~~~-~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-- 144 (340)
.+..+ |.+++|++|++||.|++|++.......... -......|...|..+....+++.|++++.|.+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~ 107 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT 107 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccc-hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc
Confidence 44454 366789999999999999986543311100 00111237788999999999999999999999999999876
Q ss_pred ceeeccccCccceeEEEe-cCCCCeEEEeeCCCeEEEEEccCCee--EE--------EeecCCCCceeeEEEccCCCcce
Q 019482 145 RIILDEPKAHKSVLDMDF-SLDSEFLATTSTDGSARIWKTEDGVA--WT--------FLTRNSDEKIELCRFSKDGTKPF 213 (340)
Q Consensus 145 ~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~d~~v~iwd~~~~~~--~~--------~~~~~~~~~v~~~~~~~~~~~~~ 213 (340)
-+...+..|.+.|.|++. -++...+|+|+-|+.|.+||+.++.. +. .+..++...+++++..+.|..
T Consensus 108 ~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~-- 185 (735)
T KOG0308|consen 108 FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI-- 185 (735)
T ss_pred hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE--
Confidence 456667788889999999 77888999999999999999997622 22 222245567999999999965
Q ss_pred EEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceee
Q 019482 214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL 293 (340)
Q Consensus 214 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~ 293 (340)
+++|+..+.|++||.++++.+..+++|...|..+..++||..+++++.||+|++||+...+++..+ ..| ...|++
T Consensus 186 ---ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~-~vH-~e~VWa 260 (735)
T KOG0308|consen 186 ---IVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY-IVH-KEGVWA 260 (735)
T ss_pred ---EEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE-Eec-cCceEE
Confidence 789999999999999999999999999999999999999999999999999999999999999886 467 457999
Q ss_pred EEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482 294 VEFCPTQRVVLTASKEWGAMITKLTVPAD 322 (340)
Q Consensus 294 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (340)
+.-+|+-..+.+|+.||.|..-++..+..
T Consensus 261 L~~~~sf~~vYsG~rd~~i~~Tdl~n~~~ 289 (735)
T KOG0308|consen 261 LQSSPSFTHVYSGGRDGNIYRTDLRNPAK 289 (735)
T ss_pred EeeCCCcceEEecCCCCcEEecccCCchh
Confidence 99999999999999999999999987653
No 110
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.1e-29 Score=187.35 Aligned_cols=263 Identities=13% Similarity=0.145 Sum_probs=222.3
Q ss_pred EEEecCCCCeeEEEEcC---CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC
Q 019482 57 YVFDESEGDPMTIAVNP---SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD 133 (340)
Q Consensus 57 ~~~~~h~~~v~~~~~~~---~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 133 (340)
.+-.||..+|..++|+| +|-+|++++.|+.-.+-+-+++..+..+.. |.+.|....++.+....++++.|
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeg-------hkgavw~~~l~~na~~aasaaad 80 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEG-------HKGAVWSATLNKNATRAASAAAD 80 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeec-------cCcceeeeecCchhhhhhhhccc
Confidence 34578999999999986 888999999999888888888888777764 88999999999998899999999
Q ss_pred CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcce
Q 019482 134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213 (340)
Q Consensus 134 g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (340)
-+-++||.-++..+..+ .|..-|..++|+.|.++|++|+.+.-++|||++..+....-...+.+.|..+.|....+.
T Consensus 81 ftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~-- 157 (334)
T KOG0278|consen 81 FTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKC-- 157 (334)
T ss_pred chhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCce--
Confidence 99999999999988766 566789999999999999999999999999998765443333456678999999988876
Q ss_pred EEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceee
Q 019482 214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL 293 (340)
Q Consensus 214 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~ 293 (340)
++++..|+.|++||.+++..++.+.. ..+++++.++++|++|.++ ..+.|.+||..+..+++.... ...|.+
T Consensus 158 ---iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~---P~nV~S 229 (334)
T KOG0278|consen 158 ---ILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKM---PCNVES 229 (334)
T ss_pred ---EEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccC---cccccc
Confidence 77889999999999999999877765 4589999999999988776 456799999999998877653 347999
Q ss_pred EEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482 294 VEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV 339 (340)
Q Consensus 294 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v 339 (340)
.+.+|+...+++|+.|+.++.||+....+... ...+|.+.|.+|
T Consensus 230 ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~--~nkgh~gpVhcV 273 (334)
T KOG0278|consen 230 ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS--YNKGHFGPVHCV 273 (334)
T ss_pred ccccCCCceEEecCcceEEEEEeccCCceeee--cccCCCCceEEE
Confidence 99999999999999999999999987765222 247787777665
No 111
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.2e-29 Score=194.98 Aligned_cols=245 Identities=13% Similarity=0.180 Sum_probs=206.0
Q ss_pred EEEecCCCCeeEEEEcCCC-CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCc
Q 019482 57 YVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH 135 (340)
Q Consensus 57 ~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 135 (340)
..|.||.+.|.+++=+|.. ..+++|+.||.|+|||+....+...+.. |.+.|..+++.. ..+++++.|.+
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~A-------H~G~V~Gi~v~~--~~~~tvgdDKt 130 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKA-------HEGLVRGICVTQ--TSFFTVGDDKT 130 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeec-------ccCceeeEEecc--cceEEecCCcc
Confidence 3579999999999999977 7899999999999999998877666654 889999999987 57889999999
Q ss_pred EEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEE
Q 019482 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (340)
Q Consensus 136 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (340)
|+.|.++. .....+ .....+..+.-+..+..++|++. .|.|||.+...++..+..+.+ .+.++.|+|....+
T Consensus 131 vK~wk~~~-~p~~ti-lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsI--- 202 (433)
T KOG0268|consen 131 VKQWKIDG-PPLHTI-LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSI--- 202 (433)
T ss_pred eeeeeccC-Ccceee-eccccccccccccccccccccCc--eeeecccccCCccceeecCCC-ceeEEecCCCcchh---
Confidence 99999775 333333 33456778887777888999975 599999999999999987664 69999999998764
Q ss_pred EEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEE
Q 019482 216 CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVE 295 (340)
Q Consensus 216 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~ 295 (340)
+++++.|+.|.+||+++..+++..... -.-+.++|+|.+-.+++|++|..++.||++..+.......+| .+.|.++.
T Consensus 203 -Las~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh-vsAV~dVd 279 (433)
T KOG0268|consen 203 -LASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH-VSAVMDVD 279 (433)
T ss_pred -eeeeccCCceEEEecccCCccceeeee-ccccceecCccccceeeccccccceehhhhhhcccchhhccc-ceeEEEec
Confidence 678889999999999999987665432 345789999988889999999999999999877666666677 67999999
Q ss_pred EecCCeEEEEEecCCcEEEEEecCCC
Q 019482 296 FCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 296 ~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
|||.|+-+++||.|.+|+||..+...
T Consensus 280 fsptG~EfvsgsyDksIRIf~~~~~~ 305 (433)
T KOG0268|consen 280 FSPTGQEFVSGSYDKSIRIFPVNHGH 305 (433)
T ss_pred cCCCcchhccccccceEEEeecCCCc
Confidence 99999999999999999999987544
No 112
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.2e-27 Score=181.72 Aligned_cols=242 Identities=16% Similarity=0.249 Sum_probs=191.8
Q ss_pred CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 142 (340)
++.|.++.|+|.+..|++++.||.+++|++........ +.|..++.+++|.++ ..+++|+-||.|+.+|+.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~--------~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK--------FKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLN 83 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh--------eecCCceeeeeccCC-ceEEEeccCceEEEEEec
Confidence 56799999999999999999999999999987743332 347899999999874 478999999999999999
Q ss_pred CCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCC
Q 019482 143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD 222 (340)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 222 (340)
+++... +..|..+|.++..++....+++|+.|++|++||.+.......+. ....|.++..+.+ . ++.++.
T Consensus 84 ~~~~~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy~~~v~g~--~-----LvVg~~ 153 (323)
T KOG1036|consen 84 TGNEDQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVYCMDVSGN--R-----LVVGTS 153 (323)
T ss_pred CCccee-eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--cCceEEEEeccCC--E-----EEEeec
Confidence 887653 55677899999999988899999999999999999865555554 3346888876543 3 788899
Q ss_pred cceEEEEECCCCcEEeee--eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEe---eccccccc--------cc
Q 019482 223 KALLAVYDISTWNKIGHK--RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN---HWSKRLHL--------GT 289 (340)
Q Consensus 223 d~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~--------~~ 289 (340)
+..+.+||+++.....+. ...+..+.++++-|++.=.++++-||.|.+=.+...+.. ......|. .-
T Consensus 154 ~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 154 DRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred CceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 999999999987654322 233467899999998888899999999988666554111 11112221 13
Q ss_pred ceeeEEEecCCeEEEEEecCCcEEEEEecCCCCC
Q 019482 290 SIALVEFCPTQRVVLTASKEWGAMITKLTVPADW 323 (340)
Q Consensus 290 ~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 323 (340)
||++++|+|--..|+||+.||.|.+|++...+..
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl 267 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL 267 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccCcchhhh
Confidence 8999999999999999999999999999876643
No 113
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=5.5e-26 Score=187.91 Aligned_cols=262 Identities=16% Similarity=0.218 Sum_probs=192.1
Q ss_pred CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeE-EEEecCCCEEEEEecCceeeeeeccccCCCCCC
Q 019482 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF-VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD 111 (340)
Q Consensus 33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 111 (340)
.++.+.+|+.+ +......+..|. .+.+++|+|+++.+ ++++.++.|++||..+++....+.. +
T Consensus 9 ~d~~v~~~d~~--------t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-------~ 72 (300)
T TIGR03866 9 KDNTISVIDTA--------TLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS-------G 72 (300)
T ss_pred CCCEEEEEECC--------CCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC-------C
Confidence 56679999875 222334455553 47789999999976 5667789999999988765443321 1
Q ss_pred CCCeEEEEEecCCCeEEE-ccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCC-eEEEEEccCCeeE
Q 019482 112 AGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG-SARIWKTEDGVAW 189 (340)
Q Consensus 112 ~~~v~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~v~iwd~~~~~~~ 189 (340)
..+..+.|+|+++.+++ +..++.|++||+++.+.+..+. ....+.+++|+|+++++++++.++ .+.+||.++++..
T Consensus 73 -~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~ 150 (300)
T TIGR03866 73 -PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIV 150 (300)
T ss_pred -CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEE
Confidence 23467899999987755 4568999999999877665553 233467899999999999888765 5677899888776
Q ss_pred EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC-------CCeeEEEECCCCCEEEEe
Q 019482 190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-------KPASVLSISLDGKYLAMG 262 (340)
Q Consensus 190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-------~~i~~~~~s~~~~~l~~~ 262 (340)
...... ..+..++|+|+++.+ ++++..++.|++||+++++.+..+..+. .....++|+|++++++++
T Consensus 151 ~~~~~~--~~~~~~~~s~dg~~l----~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~ 224 (300)
T TIGR03866 151 DNVLVD--QRPRFAEFTADGKEL----WVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA 224 (300)
T ss_pred EEEEcC--CCccEEEECCCCCEE----EEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence 655422 346789999999862 2445568999999999988766554221 123468899999986554
Q ss_pred -eCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEE-ecCCcEEEEEecCCC
Q 019482 263 -SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA-SKEWGAMITKLTVPA 321 (340)
Q Consensus 263 -~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~ 321 (340)
+.++.+.+||.++++....... ...+.+++|+|+|++|+++ +.+|.|.+|++....
T Consensus 225 ~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 225 LGPANRVAVVDAKTYEVLDYLLV---GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred cCCCCeEEEEECCCCcEEEEEEe---CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 4567899999998887654422 3478999999999998876 468999999997654
No 114
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.2e-26 Score=193.32 Aligned_cols=284 Identities=14% Similarity=0.176 Sum_probs=227.3
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCC-CCeeEEEEcCCCCeEEEEe
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~ 82 (340)
+.+|+|+|++.... . +|. +..++.|+||++.. ...+..++.+++ ..|.+++|+ ++..|.+.+
T Consensus 25 Ps~I~slA~s~kS~--~-lAv------sRt~g~IEiwN~~~-------~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g 87 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSN--Q-LAV------SRTDGNIEIWNLSN-------NWFLEPVIHGPEDRSIESLAWA-EGGRLFSSG 87 (691)
T ss_pred ccceEEEEEeccCC--c-eee------eccCCcEEEEccCC-------CceeeEEEecCCCCceeeEEEc-cCCeEEeec
Confidence 46799999998644 3 444 44677799999874 344556677765 469999999 455788889
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceee--ccccCccceeEE
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL--DEPKAHKSVLDM 160 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~~~i~~~ 160 (340)
.+|.|.-||+.+.+....... ..+.|++++.+|.+..++.|+.||.+..++...++... .+....+.+.++
T Consensus 88 ~sg~i~EwDl~~lk~~~~~d~-------~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsl 160 (691)
T KOG2048|consen 88 LSGSITEWDLHTLKQKYNIDS-------NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSL 160 (691)
T ss_pred CCceEEEEecccCceeEEecC-------CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEE
Confidence 999999999999887665543 45899999999999999999999988888877665432 233445689999
Q ss_pred EecCCCCeEEEeeCCCeEEEEEccCCeeEEEee-------cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC
Q 019482 161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT-------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (340)
Q Consensus 161 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 233 (340)
+|+|++..+++|+.||.|++||...++.+.... .....-|+++.|-.++. ++++...|.|.+||...
T Consensus 161 sw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t------I~sgDS~G~V~FWd~~~ 234 (691)
T KOG2048|consen 161 SWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST------IASGDSAGTVTFWDSIF 234 (691)
T ss_pred EecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc------EEEecCCceEEEEcccC
Confidence 999999999999999999999999988776221 11234578888888887 79999999999999999
Q ss_pred CcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE--eecccccccccceeeEEEecCCeEEEEEecCCc
Q 019482 234 WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI--NHWSKRLHLGTSIALVEFCPTQRVVLTASKEWG 311 (340)
Q Consensus 234 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 311 (340)
+..++....|...|.+++..+++.++++++.|+.|..|...+... +......++...+.+++..++ .+++|+.|..
T Consensus 235 gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~ 312 (691)
T KOG2048|consen 235 GTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFT 312 (691)
T ss_pred cchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeE
Confidence 999999999999999999999999999999999999998877643 222222233678999999876 8999999998
Q ss_pred EEEEEecC
Q 019482 312 AMITKLTV 319 (340)
Q Consensus 312 i~iw~~~~ 319 (340)
+.+-....
T Consensus 313 l~i~~s~~ 320 (691)
T KOG2048|consen 313 LAICSSRE 320 (691)
T ss_pred EEEccccc
Confidence 88776643
No 115
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.5e-26 Score=167.53 Aligned_cols=247 Identities=17% Similarity=0.231 Sum_probs=192.4
Q ss_pred CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCcee----------eeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc
Q 019482 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT----------DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131 (340)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 131 (340)
....|.+++|+|.|.+.++|+...+++|-....-.. ...... .....|.+.|+|.+|+|+|++|++|+
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~--kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLC--KRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEe--eeccccCccEEEEEecCccCeEEecC
Confidence 456799999999999999999999998865432110 000111 11123789999999999999999999
Q ss_pred CCCcEEEEeCCCCce-----eeccccCccceeEEEecCC----CCeEEEee-CCCeEEEEEccCCeeEEEeecCCCCcee
Q 019482 132 VDGHLRIMHWPSLRI-----ILDEPKAHKSVLDMDFSLD----SEFLATTS-TDGSARIWKTEDGVAWTFLTRNSDEKIE 201 (340)
Q Consensus 132 ~dg~i~~~d~~~~~~-----~~~~~~~~~~i~~~~~~~~----~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~v~ 201 (340)
.|.+|++...+...+ -..+.-|.+.|..++|-.+ +.+|++++ .|..|++-|...|+....+.++. +.|.
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sght-ghil 187 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHT-GHIL 187 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCc-ccEE
Confidence 999999987654322 2235557778999999543 45677765 46788888999999988887655 4455
Q ss_pred eEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeecc-------CCCeeEEEECCCCCEEEEeeCCCcEEEEecc
Q 019482 202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-------RKPASVLSISLDGKYLAMGSKDGDICVVDVK 274 (340)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 274 (340)
++ ++-++-. +++++.|.+|++||++-..++..+... ...|.+++..|.|++|++|-.|....+||++
T Consensus 188 al-yswn~~m-----~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir 261 (350)
T KOG0641|consen 188 AL-YSWNGAM-----FASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR 261 (350)
T ss_pred EE-EEecCcE-----EEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee
Confidence 44 2333443 789999999999999988777665322 2578999999999999999999999999999
Q ss_pred CceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482 275 KMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 275 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
.+++++.+ ..| ...|+++.|+|...++++++.|..|++-++.-
T Consensus 262 g~r~iq~f-~ph-sadir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 262 GGRMIQRF-HPH-SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred CCceeeee-CCC-ccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 99999877 456 67999999999999999999999999999864
No 116
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.3e-27 Score=188.55 Aligned_cols=239 Identities=21% Similarity=0.235 Sum_probs=195.4
Q ss_pred CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 142 (340)
.++|.+++-+|+|.+|+.|+..|.+++|.+.++.....+.. |...|+|+.|+.||.+|++|+.||.|.+|.+.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~a-------HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSA-------HYQSITCLKFSDDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHh-------hccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence 56799999999999999998999999999999987665533 88999999999999999999999999999873
Q ss_pred ---------CCceeeccccCccceeEEEecCC--CCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCc
Q 019482 143 ---------SLRIILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (340)
Q Consensus 143 ---------~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (340)
+-++...+..|.-+|+++...+. ..+++|+|.|.++++||+..+..+.++.. ...+.+++.+|.+..
T Consensus 154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f--p~si~av~lDpae~~ 231 (476)
T KOG0646|consen 154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF--PSSIKAVALDPAERV 231 (476)
T ss_pred eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec--CCcceeEEEcccccE
Confidence 22445566667779999998774 45799999999999999999999888864 457999999999987
Q ss_pred ceEEEEEecCCcceEEEEECCCCc----------------EEeeeeccCC--CeeEEEECCCCCEEEEeeCCCcEEEEec
Q 019482 212 PFLFCTVQRGDKALLAVYDISTWN----------------KIGHKRLLRK--PASVLSISLDGKYLAMGSKDGDICVVDV 273 (340)
Q Consensus 212 ~~~~~~~~~~~d~~i~i~d~~~~~----------------~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 273 (340)
++.|+.+|.|.+.++.+.. .+..+.+|.+ +|+|++++-||..|++|+.||.++|||+
T Consensus 232 -----~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 232 -----VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred -----EEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 7889999999988875432 3445666766 9999999999999999999999999999
Q ss_pred cCceEeecccccccccceeeEEEecCCeEEEEE-ecCCcEEEEEe
Q 019482 274 KKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA-SKEWGAMITKL 317 (340)
Q Consensus 274 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iw~~ 317 (340)
.+.++++.+.. ..++|+.+.+.|-.+-.+.+ ...-.+..|++
T Consensus 307 ~S~Q~iRtl~~--~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 307 YSKQCIRTLQT--SKGPVTNLQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred chHHHHHHHhh--hccccceeEeeccccceecccccCccCCchHh
Confidence 99999988753 25799999997754433332 22333444444
No 117
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.8e-27 Score=179.48 Aligned_cols=237 Identities=15% Similarity=0.181 Sum_probs=192.6
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCC--eEEEE
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD--DFVCS 81 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~ 81 (340)
.++|+|++-+. .++|+|+ .|.+|.||++... ...-.+-.|.+.|+++.|.+.-. .|++|
T Consensus 43 ~~sitavAVs~-----~~~aSGs------sDetI~IYDm~k~--------~qlg~ll~HagsitaL~F~~~~S~shLlS~ 103 (362)
T KOG0294|consen 43 AGSITALAVSG-----PYVASGS------SDETIHIYDMRKR--------KQLGILLSHAGSITALKFYPPLSKSHLLSG 103 (362)
T ss_pred ccceeEEEecc-----eeEeccC------CCCcEEEEeccch--------hhhcceeccccceEEEEecCCcchhheeee
Confidence 46677777765 4677666 5667999998732 22234567999999999998654 89999
Q ss_pred ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEE
Q 019482 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (340)
Q Consensus 82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~ 161 (340)
+.||.|.+|+...-.....+.. |.+.|+.++.+|.+++.++.+.|+.+++||+-+|+......- ....+.+.
T Consensus 104 sdDG~i~iw~~~~W~~~~slK~-------H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~ 175 (362)
T KOG0294|consen 104 SDDGHIIIWRVGSWELLKSLKA-------HKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVS 175 (362)
T ss_pred cCCCcEEEEEcCCeEEeeeecc-------cccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeE
Confidence 9999999999988876666543 778899999999999999999999999999988876544432 22345599
Q ss_pred ecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee
Q 019482 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (340)
Q Consensus 162 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 241 (340)
|+|.|.+++.+..+ .|-+|.+++......+... ..+.++.|...+. +++++++..|.+||.+...+...+.
T Consensus 176 w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~--~r~l~~~~l~~~~------L~vG~d~~~i~~~D~ds~~~~~~~~ 246 (362)
T KOG0294|consen 176 WSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP--KRILCATFLDGSE------LLVGGDNEWISLKDTDSDTPLTEFL 246 (362)
T ss_pred EcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc--ccceeeeecCCce------EEEecCCceEEEeccCCCccceeee
Confidence 99999988888764 6999999887766665422 4577888877766 7999999999999999999999999
Q ss_pred ccCCCeeEEEE--CCCCCEEEEeeCCCcEEEEeccCc
Q 019482 242 LLRKPASVLSI--SLDGKYLAMGSKDGDICVVDVKKM 276 (340)
Q Consensus 242 ~~~~~i~~~~~--s~~~~~l~~~~~dg~i~i~d~~~~ 276 (340)
.|...|-.+.+ .|++.+|++++.||.|++||++..
T Consensus 247 AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 247 AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 99999998874 567899999999999999999875
No 118
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=4.2e-27 Score=196.50 Aligned_cols=257 Identities=12% Similarity=0.132 Sum_probs=213.5
Q ss_pred ccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeE-EEEcC-CCCeEEEEecCCCEEEEEecCceeeeeeccccCCC
Q 019482 31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMT-IAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP 108 (340)
Q Consensus 31 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 108 (340)
++.++++++|.-. .+ .......+.+|.+-|.. +++-+ ++-++++|+.|..+.+|.+........+..
T Consensus 31 ~sRd~t~~vw~~~--~~----~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~Lkg----- 99 (745)
T KOG0301|consen 31 GSRDGTVKVWAKK--GK----QYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKG----- 99 (745)
T ss_pred cCCCCceeeeecc--Cc----ccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhc-----
Confidence 3456779999753 22 12223456778887777 88876 455799999999999999988877665543
Q ss_pred CCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee
Q 019482 109 LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA 188 (340)
Q Consensus 109 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~ 188 (340)
|...|.|+....++. +++|+.|.++++|... ++.....+|...|++++.-|++ .++||+.|.+|++|.- ++.
T Consensus 100 --H~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~ 171 (745)
T KOG0301|consen 100 --HKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTL 171 (745)
T ss_pred --cccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cch
Confidence 889999999888886 9999999999999754 5556688999999999999987 8999999999999985 778
Q ss_pred EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcE
Q 019482 189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDI 268 (340)
Q Consensus 189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 268 (340)
++++.+ |...|+.+++-+++. +++++.||.|++|++ +++.+..+.+|..-+.+++..+++..++++++|+++
T Consensus 172 l~tf~g-HtD~VRgL~vl~~~~------flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtl 243 (745)
T KOG0301|consen 172 LKTFSG-HTDCVRGLAVLDDSH------FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTL 243 (745)
T ss_pred hhhhcc-chhheeeeEEecCCC------eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceE
Confidence 888886 556799999999988 799999999999999 788889999999999999988888999999999999
Q ss_pred EEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482 269 CVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 269 ~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
+||+.. ++.+.+. +....|+++.+-++|. |++|+.||.|+||....
T Consensus 244 riW~~~--e~~q~I~--lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 244 RIWKKD--ECVQVIT--LPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EEeecC--ceEEEEe--cCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 999987 5554443 2245899999999887 88889999999999874
No 119
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.9e-27 Score=179.57 Aligned_cols=264 Identities=15% Similarity=0.131 Sum_probs=194.5
Q ss_pred EecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec--CCCeEEEccCCCcE
Q 019482 59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHL 136 (340)
Q Consensus 59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i 136 (340)
-.+|.+-|+++.|.+.|+++|+|+.|++++|||.++..........- -.|.+.|..+.|.+ -|+.+|+++.|+++
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W---rah~~Si~rV~WAhPEfGqvvA~cS~Drtv 85 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW---RAHDGSIWRVVWAHPEFGQVVATCSYDRTV 85 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeE---EecCCcEEEEEecCccccceEEEEecCCce
Confidence 34788999999999999999999999999999976554333332211 12889999999966 58899999999999
Q ss_pred EEEeCCC---------CceeeccccCccceeEEEecC--CCCeEEEeeCCCeEEEEEccCCeeEEEee------------
Q 019482 137 RIMHWPS---------LRIILDEPKAHKSVLDMDFSL--DSEFLATTSTDGSARIWKTEDGVAWTFLT------------ 193 (340)
Q Consensus 137 ~~~d~~~---------~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~v~iwd~~~~~~~~~~~------------ 193 (340)
.||.-.. ......+......|+++.|.| -|-.|++++.||.+|||+....-.+....
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 9997521 112233445566899999999 46789999999999999876543322221
Q ss_pred cCCCCceeeEEEccCCCcceEEEEEecCCc-----ceEEEEECCCC----cEEeeeeccCCCeeEEEECCC----CCEEE
Q 019482 194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDK-----ALLAVYDISTW----NKIGHKRLLRKPASVLSISLD----GKYLA 260 (340)
Q Consensus 194 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~s~~----~~~l~ 260 (340)
..+..+..|+.|+|..-..-+ ++.++.+ +.++||..... ..+.++..+..+|+.++|.|+ -..||
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~--iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPL--IAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred ccccCcceEEeeccccccCce--EEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence 123446788999976433222 3444433 47888876543 356667789999999999995 35799
Q ss_pred EeeCCCcEEEEeccCce------------------Eeec-ccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 261 MGSKDGDICVVDVKKME------------------INHW-SKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 261 ~~~~dg~i~i~d~~~~~------------------~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
+++.|| |+||.++... .... ....| ...|+.+.|+-.|..|++.|.||.|++|.....+
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H-~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH-NGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNN 321 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC-CCceEEEEEeeeeeEEeecCCCceeeehhhhhhh
Confidence 999999 9999987411 1111 12345 6799999999999999999999999999998888
Q ss_pred CCCCCccc
Q 019482 322 DWKGLSLP 329 (340)
Q Consensus 322 ~~~~~~~~ 329 (340)
.|+.....
T Consensus 322 ~~kC~sv~ 329 (361)
T KOG2445|consen 322 LWKCTSVL 329 (361)
T ss_pred hheeeeEE
Confidence 77654433
No 120
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.96 E-value=3.8e-27 Score=187.82 Aligned_cols=291 Identities=16% Similarity=0.186 Sum_probs=214.4
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCC-CCeEEEEe
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCST 82 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~ 82 (340)
.++|+|++|.|..+ ..++|.|+..|. |-+|+++.+... ..-.+.+..|..+|.++.|+|. ...+++.+
T Consensus 186 ~~Rit~l~fHPt~~-~~lva~GdK~G~------VG~Wn~~~~~~d----~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS 254 (498)
T KOG4328|consen 186 DRRITSLAFHPTEN-RKLVAVGDKGGQ------VGLWNFGTQEKD----KDGVYLFTPHSGPVSGLKFSPANTSQIYSSS 254 (498)
T ss_pred ccceEEEEecccCc-ceEEEEccCCCc------EEEEecCCCCCc----cCceEEeccCCccccceEecCCChhheeeec
Confidence 57999999999653 478888886555 999999633322 2233567889999999999994 46899999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCce-eeccccCccceeEEE
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-ILDEPKAHKSVLDMD 161 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~i~~~~ 161 (340)
.||+|++-|++.......+... ........+.|+.+...++.+..=|...+||+++... ...+.-|...|.+++
T Consensus 255 yDGtiR~~D~~~~i~e~v~s~~-----~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~ 329 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISEEVLSLD-----TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVA 329 (498)
T ss_pred cCceeeeeeecchhhHHHhhcC-----ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceee
Confidence 9999999999876543322221 1334567788888877788887778999999998765 555666777999999
Q ss_pred ecC-CCCeEEEeeCCCeEEEEEccCCeeEEE---eecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC----C
Q 019482 162 FSL-DSEFLATTSTDGSARIWKTEDGVAWTF---LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS----T 233 (340)
Q Consensus 162 ~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~----~ 233 (340)
++| ...+|+|++.|++++|||++.-..... ....|...|.++.|||.+.. +++.+.|..|+|||.. .
T Consensus 330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-----l~TT~~D~~IRv~dss~~sa~ 404 (498)
T KOG4328|consen 330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-----LLTTCQDNEIRVFDSSCISAK 404 (498)
T ss_pred cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-----eEeeccCCceEEeeccccccc
Confidence 999 556799999999999999986433221 11245668999999999887 7899999999999984 2
Q ss_pred CcEEeeeeccC----C--CeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccccccee-eEEEecCCeEEEEE
Q 019482 234 WNKIGHKRLLR----K--PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA-LVEFCPTQRVVLTA 306 (340)
Q Consensus 234 ~~~~~~~~~~~----~--~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~ 306 (340)
..+...+ .|. . ......|.|+..++++|..-..|-|+|-..++.+..+.... ...|. -..|+|-+..+++|
T Consensus 405 ~~p~~~I-~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~-~~tI~~vn~~HP~~~~~~aG 482 (498)
T KOG4328|consen 405 DEPLGTI-PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE-SSTIPSVNEFHPMRDTLAAG 482 (498)
T ss_pred CCcccee-eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc-ccccccceeecccccceecc
Confidence 2232222 222 1 13346899999999999999999999999998776653333 22344 34799988745554
Q ss_pred -ecCCcEEEEEe
Q 019482 307 -SKEWGAMITKL 317 (340)
Q Consensus 307 -~~dg~i~iw~~ 317 (340)
+..|.|+||.-
T Consensus 483 ~~s~Gki~vft~ 494 (498)
T KOG4328|consen 483 GNSSGKIYVFTN 494 (498)
T ss_pred CCccceEEEEec
Confidence 45688888864
No 121
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=4.1e-26 Score=184.15 Aligned_cols=274 Identities=16% Similarity=0.218 Sum_probs=208.8
Q ss_pred eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecC-CCCeeEEEEcCCCCeEEEEecC
Q 019482 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-EGDPMTIAVNPSGDDFVCSTTN 84 (340)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~d 84 (340)
-|+.++|.|... +++++-+ .+.+.+|.. .+..+.+ ..-.++.+ .+-|.|++|.++|+ +++|..+
T Consensus 202 ~v~~a~FHPtd~--nliit~G-------k~H~~Fw~~--~~~~l~k---~~~~fek~ekk~Vl~v~F~engd-viTgDS~ 266 (626)
T KOG2106|consen 202 VVFLATFHPTDP--NLIITCG-------KGHLYFWTL--RGGSLVK---RQGIFEKREKKFVLCVTFLENGD-VITGDSG 266 (626)
T ss_pred eEEEEEeccCCC--cEEEEeC-------CceEEEEEc--cCCceEE---EeeccccccceEEEEEEEcCCCC-EEeecCC
Confidence 467889999644 5665333 233777754 3433322 11223333 35699999999986 7899999
Q ss_pred CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCcee-----------------
Q 019482 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII----------------- 147 (340)
Q Consensus 85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~----------------- 147 (340)
|.|.||+..+.+...... .|.+.|.++....+|.+ ++|+.|..|..||-. -+..
T Consensus 267 G~i~Iw~~~~~~~~k~~~-------aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e 337 (626)
T KOG2106|consen 267 GNILIWSKGTNRISKQVH-------AHDGGVFSLCMLRDGTL-LSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAE 337 (626)
T ss_pred ceEEEEeCCCceEEeEee-------ecCCceEEEEEecCccE-eecCccceEEecccc-ccccccccCchhcCCeeEEec
Confidence 999999997776554443 38899999999999965 559999999999831 1000
Q ss_pred ------------------------eccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeE
Q 019482 148 ------------------------LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELC 203 (340)
Q Consensus 148 ------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~ 203 (340)
....+|.+....++.+|+.+.+++++.|+.+++|+ ..+++.+.. ...+..++
T Consensus 338 ~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~--~~d~~~~~ 413 (626)
T KOG2106|consen 338 GKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI--IEDPAECA 413 (626)
T ss_pred CCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE--ecCceeEe
Confidence 01234555778899999999999999999999999 445544443 34578999
Q ss_pred EEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce-Eeecc
Q 019482 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME-INHWS 282 (340)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~ 282 (340)
.|+|.|. ++.+...|...+.|..+...+..... ..+++++.|+|+|.+||+|+.|+.|+||-+.... .....
T Consensus 414 ~fhpsg~------va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~ 486 (626)
T KOG2106|consen 414 DFHPSGV------VAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRV 486 (626)
T ss_pred eccCcce------EEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEe
Confidence 9999994 78899999999999999666654444 8899999999999999999999999999987543 33333
Q ss_pred cccccccceeeEEEecCCeEEEEEecCCcEEEE
Q 019482 283 KRLHLGTSIALVEFCPTQRVVLTASKEWGAMIT 315 (340)
Q Consensus 283 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 315 (340)
.. +.+.+|+.+.|++|+++|.+-+.|-.+..|
T Consensus 487 ~k-~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 487 GK-CSGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred ee-ecCceeEEeeecCCCceEEeccCceEEEEE
Confidence 33 336899999999999999999999999999
No 122
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=2.2e-27 Score=198.15 Aligned_cols=322 Identities=14% Similarity=0.122 Sum_probs=229.2
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCc-----------ccCC--ee----------eEEEec
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSV-----------YTSP--LV----------TYVFDE 61 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~-----------~~~~--~~----------~~~~~~ 61 (340)
.-|.+++|.....+..++|+++ .|..|+||.+...+..- ...+ .. ...+.|
T Consensus 192 DWIrsl~f~~~~~~~~~laS~S------QD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~G 265 (764)
T KOG1063|consen 192 DWIRSLAFARLGGDDLLLASSS------QDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMG 265 (764)
T ss_pred hhhhhhhhhccCCCcEEEEecC------CceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcC
Confidence 4467788887555456777666 56679999986444110 0001 01 123459
Q ss_pred CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC
Q 019482 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (340)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~ 141 (340)
|++-|+++.|+|.+..|++++.|.++.+|...+...+......-...-...+......|+|+++.+++-+..|..++|..
T Consensus 266 HeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt 345 (764)
T KOG1063|consen 266 HEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKT 345 (764)
T ss_pred cccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEec
Confidence 99999999999999999999999999999988764332221111000123456788999999999999999999999983
Q ss_pred CCC---ceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccC---------------------------------
Q 019482 142 PSL---RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED--------------------------------- 185 (340)
Q Consensus 142 ~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~--------------------------------- 185 (340)
++. .....+.+|.+.|.+++|+|.|.+|++.+.|.+-|+|-.-.
T Consensus 346 ~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSg 425 (764)
T KOG1063|consen 346 KDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSG 425 (764)
T ss_pred cCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeec
Confidence 321 23344567888999999999999999999999888862110
Q ss_pred --CeeEEE------------------------------------------------------------------------
Q 019482 186 --GVAWTF------------------------------------------------------------------------ 191 (340)
Q Consensus 186 --~~~~~~------------------------------------------------------------------------ 191 (340)
.+.++.
T Consensus 426 AdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~ 505 (764)
T KOG1063|consen 426 ADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPT 505 (764)
T ss_pred ccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCCh
Confidence 000000
Q ss_pred ---------------eecCCCCceeeEEEccCCCcceEEEEEecC-----CcceEEEEECCCCcEEeeeeccCCCeeEEE
Q 019482 192 ---------------LTRNSDEKIELCRFSKDGTKPFLFCTVQRG-----DKALLAVYDISTWNKIGHKRLLRKPASVLS 251 (340)
Q Consensus 192 ---------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 251 (340)
+. +|...|++++.+|+++. ++++. ....|++|+..++..++.+..|.-.|+.++
T Consensus 506 EdqLq~~tLwPEv~KLY-GHGyEv~~l~~s~~gnl-----iASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~ 579 (764)
T KOG1063|consen 506 EDQLQQNTLWPEVHKLY-GHGYEVYALAISPTGNL-----IASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLA 579 (764)
T ss_pred HHHHHHhccchhhHHhc-cCceeEEEEEecCCCCE-----EeehhhhCCccceEEEEEeccchhhhheecccceEEEEEE
Confidence 00 12245788999999885 34443 345699999999999989999999999999
Q ss_pred ECCCCCEEEEeeCCCcEEEEeccCceEeec---ccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCc-
Q 019482 252 ISLDGKYLAMGSKDGDICVVDVKKMEINHW---SKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLS- 327 (340)
Q Consensus 252 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~- 327 (340)
|||||++|++.+.|+++.+|.......... ....| ..-|+++.|+|++.+++|+|.|.+|+||.......-....
T Consensus 580 FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~H-tRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~ 658 (764)
T KOG1063|consen 580 FSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAH-TRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF 658 (764)
T ss_pred ECCCCcEEEEeecCceEEeeeeecccchhhhhcccccc-ceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh
Confidence 999999999999999999998855332211 13456 5689999999999999999999999999997652211111
Q ss_pred cccccccccccC
Q 019482 328 LPLLHSHSQNSV 339 (340)
Q Consensus 328 ~~~~h~~~v~~v 339 (340)
.-..+...|+++
T Consensus 659 a~~~~~~aVTAv 670 (764)
T KOG1063|consen 659 ACLKFSLAVTAV 670 (764)
T ss_pred chhccCCceeeE
Confidence 334455555554
No 123
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.3e-27 Score=174.54 Aligned_cols=239 Identities=13% Similarity=0.123 Sum_probs=184.8
Q ss_pred EcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC--CCCeEEEEecCCCEEEEEecCceeeeee
Q 019482 24 LGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCSTTNGGCKLFEVYGGATDINL 101 (340)
Q Consensus 24 ~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 101 (340)
+|.+..+.++|++|+|+...+... ..+..+|.||.++|..++|.. .|.+||+++.||+|.||.-..++..+..
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~-----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~ 96 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQ-----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAY 96 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCC-----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhh
Confidence 333334466888899999986653 245678999999999999965 7999999999999999998877543222
Q ss_pred ccccCCCCCCCCCeEEEEEecC--CCeEEEccCCCcEEEEeCCCC-c--eeeccccCccceeEEEecCC---C-------
Q 019482 102 LAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSL-R--IILDEPKAHKSVLDMDFSLD---S------- 166 (340)
Q Consensus 102 ~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~-~--~~~~~~~~~~~i~~~~~~~~---~------- 166 (340)
. ...|...|++++|.|. |-.|++++.||.|.+.+.++. . .......|.-.++++.|.|. |
T Consensus 97 e-----~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~ 171 (299)
T KOG1332|consen 97 E-----HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGP 171 (299)
T ss_pred h-----hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCc
Confidence 2 2238899999999995 568899999999999988754 1 22334456668999999985 4
Q ss_pred ----CeEEEeeCCCeEEEEEccCCeeE--EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc---EE
Q 019482 167 ----EFLATTSTDGSARIWKTEDGVAW--TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN---KI 237 (340)
Q Consensus 167 ----~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~---~~ 237 (340)
+.|++|+.|..|+||+..+++-+ .++ ..|...|+.++|.|.-.. -..++++++.|+.+.||-.+... ..
T Consensus 172 ~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l-~~H~dwVRDVAwaP~~gl-~~s~iAS~SqDg~viIwt~~~e~e~wk~ 249 (299)
T KOG1332|consen 172 AAKVKRLVSGGCDNLVKIWKFDSDSWKLERTL-EGHKDWVRDVAWAPSVGL-PKSTIASCSQDGTVIIWTKDEEYEPWKK 249 (299)
T ss_pred ccccceeeccCCccceeeeecCCcchhhhhhh-hhcchhhhhhhhccccCC-CceeeEEecCCCcEEEEEecCccCcccc
Confidence 56999999999999999876322 223 356678999999998643 23458999999999999877321 12
Q ss_pred eeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEecc
Q 019482 238 GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK 274 (340)
Q Consensus 238 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 274 (340)
..+......+..+.||+.|+.|++++.|+.+.+|.-.
T Consensus 250 tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 250 TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 2344456789999999999999999999999999754
No 124
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=8e-27 Score=200.61 Aligned_cols=244 Identities=11% Similarity=0.139 Sum_probs=204.2
Q ss_pred cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCce-eeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEE
Q 019482 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA-TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (340)
Q Consensus 61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 139 (340)
.|...-+.++|.|+|++|++++.||.|++|+..... ....+. .+...|.+++. ++.+|++++.+++|.+|
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~-------~~g~~v~~ia~--~s~~f~~~s~~~tv~~y 81 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID-------ISGELVSSIAC--YSNHFLTGSEQNTVLRY 81 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh-------ccCceeEEEee--cccceEEeeccceEEEe
Confidence 588889999999999999999999999999987663 221111 04456666654 56699999999999999
Q ss_pred eCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEe
Q 019482 140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (340)
Q Consensus 140 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 219 (340)
.+..++.-..+....-++.+++++.+|+++|.|+.|-.|++-++.+......+.+ +.++|.++.|+|.+.. +++
T Consensus 82 ~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg-h~apVl~l~~~p~~~f-----LAv 155 (933)
T KOG1274|consen 82 KFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG-HDAPVLQLSYDPKGNF-----LAV 155 (933)
T ss_pred eCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc-cCCceeeeeEcCCCCE-----EEE
Confidence 9998876555555566899999999999999999999999999998888888874 5679999999999997 788
Q ss_pred cCCcceEEEEECCCCcEEeeeecc--------CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccce
Q 019482 220 RGDKALLAVYDISTWNKIGHKRLL--------RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI 291 (340)
Q Consensus 220 ~~~d~~i~i~d~~~~~~~~~~~~~--------~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i 291 (340)
.+.||.+++||+.++.....+..- ...+..++|+|+|..+++.+.|+.|++|+..+.+....+...+....+
T Consensus 156 ss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~ 235 (933)
T KOG1274|consen 156 SSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKF 235 (933)
T ss_pred EecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccce
Confidence 889999999999988765444322 245678999999888888889999999999999888777655545569
Q ss_pred eeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482 292 ALVEFCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 292 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
..++|+|+|+|||+++.||.|.||+++.
T Consensus 236 ~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 236 SDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 9999999999999999999999999984
No 125
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=4.6e-29 Score=209.05 Aligned_cols=237 Identities=18% Similarity=0.257 Sum_probs=212.5
Q ss_pred EecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEE
Q 019482 59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI 138 (340)
Q Consensus 59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 138 (340)
+-.|...|.++..-..++.+++|+.|..+-+|.+........+. .|..+|.++.|+++..+|++|+.+|+|++
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~-------~hespIeSl~f~~~E~LlaagsasgtiK~ 96 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLT-------GHESPIESLTFDTSERLLAAGSASGTIKV 96 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheee-------ccCCcceeeecCcchhhhcccccCCceee
Confidence 33588888888887788899999999989999987665554433 38899999999999999999999999999
Q ss_pred EeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEE
Q 019482 139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218 (340)
Q Consensus 139 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 218 (340)
||++..+.+..+.+|...+..+.|+|-+.+++.|+.|+.+++||.+...+...+.. +...+..+.|+|+|++ ++
T Consensus 97 wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s-~~~vv~~l~lsP~Gr~-----v~ 170 (825)
T KOG0267|consen 97 WDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS-HTRVVDVLRLSPDGRW-----VA 170 (825)
T ss_pred eehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC-CcceeEEEeecCCCce-----ee
Confidence 99999999999999999999999999999999999999999999998889888886 5567999999999998 78
Q ss_pred ecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEec
Q 019482 219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298 (340)
Q Consensus 219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~ 298 (340)
.+++|..+++||...|+....+..|.+.+..+.|+|..-+++.|+.|+.+++||+++.+.+...... ...|.+.+|+|
T Consensus 171 ~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~ 248 (825)
T KOG0267|consen 171 SGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNP 248 (825)
T ss_pred ccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecC
Confidence 8999999999999999999999999999999999999999999999999999999999888766433 46899999999
Q ss_pred CCeEEEEEecCC
Q 019482 299 TQRVVLTASKEW 310 (340)
Q Consensus 299 ~~~~l~~~~~dg 310 (340)
++..+++|..+.
T Consensus 249 ~~~~~~~G~q~s 260 (825)
T KOG0267|consen 249 DGKIVLSGEQIS 260 (825)
T ss_pred CceeeecCchhh
Confidence 999988887663
No 126
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.6e-27 Score=181.99 Aligned_cols=269 Identities=13% Similarity=0.149 Sum_probs=220.6
Q ss_pred eeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC
Q 019482 54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD 133 (340)
Q Consensus 54 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 133 (340)
.+...+.||.+.|..++.......+.+++.|.+.+||.++++.+...+.+ |.+.|++++|++.+.++++++.|
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~G-------H~GSVNsikfh~s~~L~lTaSGD 211 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTG-------HTGSVNSIKFHNSGLLLLTASGD 211 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecc-------cccceeeEEeccccceEEEccCC
Confidence 34567899999999999988888999999999999999999999877764 88999999999999999999999
Q ss_pred CcEEEEeC------CC----------------------------------CceeeccccCccceeEEEecCCCCeEEEee
Q 019482 134 GHLRIMHW------PS----------------------------------LRIILDEPKAHKSVLDMDFSLDSEFLATTS 173 (340)
Q Consensus 134 g~i~~~d~------~~----------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 173 (340)
++..||.. .. .-++..+.+|...|.+..|-..|+.+++++
T Consensus 212 ~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS 291 (481)
T KOG0300|consen 212 ETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS 291 (481)
T ss_pred cchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeee
Confidence 99999962 11 001234556777888899999999999999
Q ss_pred CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC-cEEeeeeccCCCeeEEEE
Q 019482 174 TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-NKIGHKRLLRKPASVLSI 252 (340)
Q Consensus 174 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~ 252 (340)
.|.+..+||+++++++..+.++ +...+.++-+|..+. +++++.|.+.++||++.. ..+..+.+|...|+++.|
T Consensus 292 WDRTAnlwDVEtge~v~~LtGH-d~ELtHcstHptQrL-----VvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF 365 (481)
T KOG0300|consen 292 WDRTANLWDVETGEVVNILTGH-DSELTHCSTHPTQRL-----VVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVF 365 (481)
T ss_pred ccccceeeeeccCceeccccCc-chhccccccCCcceE-----EEEeccCceeEeccchhhcceeeeecccccceeEEEE
Confidence 9999999999999999988865 456888888998886 789999999999999853 356778999999999999
Q ss_pred CCCCCEEEEeeCCCcEEEEeccCce-EeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCC-CCcccc
Q 019482 253 SLDGKYLAMGSKDGDICVVDVKKME-INHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWK-GLSLPL 330 (340)
Q Consensus 253 s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~ 330 (340)
..+. .+++|+.|.+|++||++... ++..+.. .++++.++.+..+..|+.--++..|++||++...... +-...+
T Consensus 366 ~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRt---dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRq 441 (481)
T KOG0300|consen 366 NTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRT---DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQ 441 (481)
T ss_pred ecCC-ceeecCCCceEEEeeeccccCcceeeec---CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccc
Confidence 8764 68899999999999998865 3443332 5689999999988889998888999999997544221 223456
Q ss_pred ccccccccC
Q 019482 331 LHSHSQNSV 339 (340)
Q Consensus 331 ~h~~~v~~v 339 (340)
.|...|.+.
T Consensus 442 gHrRMV~c~ 450 (481)
T KOG0300|consen 442 GHRRMVTCC 450 (481)
T ss_pred ccceeeeee
Confidence 777766554
No 127
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.7e-26 Score=176.14 Aligned_cols=285 Identities=13% Similarity=0.175 Sum_probs=215.6
Q ss_pred eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCC
Q 019482 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (340)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~ 86 (340)
..|+.|++ -+.++|.|.. +|.+-||+++ +......+.+|..+|.+++||++|+.|++++.|..
T Consensus 26 a~~~~Fs~---~G~~lAvGc~------nG~vvI~D~~--------T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~s 88 (405)
T KOG1273|consen 26 AECCQFSR---WGDYLAVGCA------NGRVVIYDFD--------TFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWS 88 (405)
T ss_pred cceEEecc---Ccceeeeecc------CCcEEEEEcc--------ccchhhhhhccccceeEEEecCCCCEeeeecCCce
Confidence 57999999 5568888885 4559999998 55556778899999999999999999999999999
Q ss_pred EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCC-eEEEccCCCcEEEEeCCCCceeeccccC-c----cceeEE
Q 019482 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPSLRIILDEPKA-H----KSVLDM 160 (340)
Q Consensus 87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~----~~i~~~ 160 (340)
|.+||+..+....++. ..++|....|+|... ..++.-.+..-.+.++....... +... . ....+.
T Consensus 89 i~lwDl~~gs~l~rir--------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~-Lp~d~d~dln~sas~~ 159 (405)
T KOG1273|consen 89 IKLWDLLKGSPLKRIR--------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV-LPKDDDGDLNSSASHG 159 (405)
T ss_pred eEEEeccCCCceeEEE--------ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee-ccCCCccccccccccc
Confidence 9999999988665553 558999999999443 33333333334455554322111 1111 1 123344
Q ss_pred EecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC------
Q 019482 161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW------ 234 (340)
Q Consensus 161 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~------ 234 (340)
.|.+.|+++++|...|.+.++|..+-+++..++......|..+.++..|+. ++..+.|..|+.|+++.-
T Consensus 160 ~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~-----liiNtsDRvIR~ye~~di~~~~r~ 234 (405)
T KOG1273|consen 160 VFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRF-----LIINTSDRVIRTYEISDIDDEGRD 234 (405)
T ss_pred cccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcE-----EEEecCCceEEEEehhhhcccCcc
Confidence 688999999999999999999999999998887655567999999999997 788899999999998631
Q ss_pred -cEE--eeeec--cCCCeeEEEECCCCCEEEEeeC-CCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEec
Q 019482 235 -NKI--GHKRL--LRKPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK 308 (340)
Q Consensus 235 -~~~--~~~~~--~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 308 (340)
++. +.+.. .+.+-.+++||.+|.|++.++. -..++||....|..++.+. +..+.....+.|+|-...+++- .
T Consensus 235 ~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh-G~kgE~l~DV~whp~rp~i~si-~ 312 (405)
T KOG1273|consen 235 GEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH-GTKGEELLDVNWHPVRPIIASI-A 312 (405)
T ss_pred CCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeec-CCchhheeecccccceeeeeec-c
Confidence 111 11110 1234467889999999998874 4579999999999998774 4435678899999998888877 7
Q ss_pred CCcEEEEEecCCCCCC
Q 019482 309 EWGAMITKLTVPADWK 324 (340)
Q Consensus 309 dg~i~iw~~~~~~~~~ 324 (340)
.|.++||....+..|.
T Consensus 313 sg~v~iw~~~~~enws 328 (405)
T KOG1273|consen 313 SGVVYIWAVVQVENWS 328 (405)
T ss_pred CCceEEEEeecccchh
Confidence 7899999998776654
No 128
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.8e-26 Score=182.53 Aligned_cols=232 Identities=14% Similarity=0.170 Sum_probs=186.9
Q ss_pred CeEEEEecC-CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCc
Q 019482 76 DDFVCSTTN-GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH 154 (340)
Q Consensus 76 ~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 154 (340)
.+++++... ..+.+|.+......... .--.++|.+++-+|+|.+++.|+..|.|++|.+.+|..+..+..|-
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~-------~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHY 123 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQY-------IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHY 123 (476)
T ss_pred hheeeecccCccccccccCchhhhhhh-------cccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhc
Confidence 566666543 47899998765443311 1144789999999999999999899999999999999999898888
Q ss_pred cceeEEEecCCCCeEEEeeCCCeEEEEEcc---------CCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcce
Q 019482 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTE---------DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225 (340)
Q Consensus 155 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~ 225 (340)
..|+++.|+-||.+|++|+.||.|.+|++. +-+++..+. +|.-+|+++...+.|.... +++++.|.+
T Consensus 124 Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~-~HtlsITDl~ig~Gg~~~r---l~TaS~D~t 199 (476)
T KOG0646|consen 124 QSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS-DHTLSITDLQIGSGGTNAR---LYTASEDRT 199 (476)
T ss_pred cceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec-cCcceeEEEEecCCCccce---EEEecCCce
Confidence 999999999999999999999999999874 234555555 4556899999888764322 789999999
Q ss_pred EEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE----------------eecccccccc-
Q 019482 226 LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI----------------NHWSKRLHLG- 288 (340)
Q Consensus 226 i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~----------------~~~~~~~~~~- 288 (340)
+++||+..+..+..+.. ...+.+++.+|-++.+++|+++|.|.+.++..... ... ..+|.+
T Consensus 200 ~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~-~~Gh~~~ 277 (476)
T KOG0646|consen 200 IKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINV-LVGHENE 277 (476)
T ss_pred EEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeee-eccccCC
Confidence 99999999988766543 56899999999999999999999999988754321 111 234532
Q ss_pred cceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482 289 TSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 289 ~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
..|++++.+-||.+|++|+.||.++||++...
T Consensus 278 ~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 278 SAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred cceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 48999999999999999999999999998643
No 129
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=2.4e-27 Score=191.25 Aligned_cols=248 Identities=14% Similarity=0.193 Sum_probs=202.4
Q ss_pred cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEe
Q 019482 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH 140 (340)
Q Consensus 61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d 140 (340)
.|..-|.++.++...+++++|+..+ |+|||+...... ........+.....++++.+.|||+.|++|++-.++.|||
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGkgc-VKVWdis~pg~k--~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGKGC-VKVWDISQPGNK--SPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCCCe-EEEeeccCCCCC--CccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence 4777788999999999999998755 999999754221 1111222333567899999999999999999999999999
Q ss_pred CCCCceeec--cccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEE
Q 019482 141 WPSLRIILD--EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218 (340)
Q Consensus 141 ~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 218 (340)
+.......+ +....-....++.+||.+..+++..||.|.|||+.+...+..+.++.+ .+.|+..+++|.. +-
T Consensus 494 LAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD-GascIdis~dGtk-----lW 567 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-GASCIDISKDGTK-----LW 567 (705)
T ss_pred ccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC-CceeEEecCCCce-----ee
Confidence 976544322 222223578899999999999999999999999999999999987665 5999999999998 89
Q ss_pred ecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEec
Q 019482 219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298 (340)
Q Consensus 219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~ 298 (340)
+++-|++++.||+++++.+... .....|.++..+|++.++++|-+++.+-+......+..+. ..| .+-|.++.|.+
T Consensus 568 TGGlDntvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyql--hlh-eScVLSlKFa~ 643 (705)
T KOG0639|consen 568 TGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQL--HLH-ESCVLSLKFAY 643 (705)
T ss_pred cCCCccceeehhhhhhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCCccceee--ccc-ccEEEEEEecc
Confidence 9999999999999998876443 3456899999999999999999999998887766554443 345 67899999999
Q ss_pred CCeEEEEEecCCcEEEEEecCCC
Q 019482 299 TQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 299 ~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
.|+++++.+.|+.+..|......
T Consensus 644 cGkwfvStGkDnlLnawrtPyGa 666 (705)
T KOG0639|consen 644 CGKWFVSTGKDNLLNAWRTPYGA 666 (705)
T ss_pred cCceeeecCchhhhhhccCcccc
Confidence 99999999999999999987654
No 130
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=6.4e-26 Score=195.09 Aligned_cols=275 Identities=20% Similarity=0.228 Sum_probs=215.2
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 84 (340)
.-.+.++|.|+.+ ++.+ .++++.|++|+-..... .|.. +.-+...|.+++.. +.+|++++.+
T Consensus 14 ~G~t~i~~d~~ge---fi~t------cgsdg~ir~~~~~sd~e----~P~t---i~~~g~~v~~ia~~--s~~f~~~s~~ 75 (933)
T KOG1274|consen 14 GGLTLICYDPDGE---FICT------CGSDGDIRKWKTNSDEE----EPET---IDISGELVSSIACY--SNHFLTGSEQ 75 (933)
T ss_pred CceEEEEEcCCCC---EEEE------ecCCCceEEeecCCccc----CCch---hhccCceeEEEeec--ccceEEeecc
Confidence 3467899999654 4443 34677799998764421 1211 11266778888774 5599999999
Q ss_pred CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecC
Q 019482 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL 164 (340)
Q Consensus 85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 164 (340)
++|.+|.+..++....+.. ..-++++++|+-+|++++.|+.|-.|++.++.+......+.+|..+|.++.|+|
T Consensus 76 ~tv~~y~fps~~~~~iL~R-------ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p 148 (933)
T KOG1274|consen 76 NTVLRYKFPSGEEDTILAR-------FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP 148 (933)
T ss_pred ceEEEeeCCCCCccceeee-------eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC
Confidence 9999999987764332221 346889999999999999999999999999999888889999999999999999
Q ss_pred CCCeEEEeeCCCeEEEEEccCCeeEEEeecC-------CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEE
Q 019482 165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRN-------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI 237 (340)
Q Consensus 165 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~ 237 (340)
++++||+.+-||.|++||++++.+...+..- ....+..++|+|++.. ++....|+.|++|+...+...
T Consensus 149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~-----la~~~~d~~Vkvy~r~~we~~ 223 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT-----LAVPPVDNTVKVYSRKGWELQ 223 (933)
T ss_pred CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe-----EEeeccCCeEEEEccCCceeh
Confidence 9999999999999999999998877665421 1345678999999776 677788999999999999877
Q ss_pred eeeecc--CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEE
Q 019482 238 GHKRLL--RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMIT 315 (340)
Q Consensus 238 ~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 315 (340)
..+... ...+..+.|+|+|+|||+++.||.|.|||.++-+. + .. ...|.+++|.|+.+.+-.....|...+|
T Consensus 224 f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~----~~-~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 224 FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-H----EF-KRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-c----cc-cceeEEEecCCCCCeeEEEeeccccccC
Confidence 666543 34489999999999999999999999999998322 1 11 4589999999998766555555555444
No 131
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=3e-25 Score=179.21 Aligned_cols=287 Identities=14% Similarity=0.235 Sum_probs=213.6
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 84 (340)
.-|+|++|++.+....+++. + .+.+..+.+|++...... ...+...+.|....|+|.+..++.....
T Consensus 155 ~GV~~vaFsk~~~G~~l~~v-D----~s~~h~lSVWdWqk~~~~--------~~vk~sne~v~~a~FHPtd~nliit~Gk 221 (626)
T KOG2106|consen 155 RGVTCVAFSKINGGSLLCAV-D----DSNPHMLSVWDWQKKAKL--------GPVKTSNEVVFLATFHPTDPNLIITCGK 221 (626)
T ss_pred ccceeeeecccCCCceEEEe-c----CCCccccchhhchhhhcc--------CcceeccceEEEEEeccCCCcEEEEeCC
Confidence 45899999996654344442 2 346778999999743321 1233345678899999977766665666
Q ss_pred CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecC
Q 019482 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL 164 (340)
Q Consensus 85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 164 (340)
+.+.+|+++.+....+.-.-+. .....|.|++|.++|+ +++|..+|.|.||+..+.+.......|.+.|.+++.-.
T Consensus 222 ~H~~Fw~~~~~~l~k~~~~fek---~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr 297 (626)
T KOG2106|consen 222 GHLYFWTLRGGSLVKRQGIFEK---REKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLR 297 (626)
T ss_pred ceEEEEEccCCceEEEeecccc---ccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEec
Confidence 7799999988776544322111 1337899999999995 67999999999999987777666668888999999999
Q ss_pred CCCeEEEeeCCCeEEEEEccCCe-----------eEEEe----------------------------ecCCCCceeeEEE
Q 019482 165 DSEFLATTSTDGSARIWKTEDGV-----------AWTFL----------------------------TRNSDEKIELCRF 205 (340)
Q Consensus 165 ~~~~l~~~~~d~~v~iwd~~~~~-----------~~~~~----------------------------~~~~~~~v~~~~~ 205 (340)
+|.+ ++|+.|..|..||-.-.+ .++++ ...|......++.
T Consensus 298 ~Gtl-lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~ 376 (626)
T KOG2106|consen 298 DGTL-LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLAT 376 (626)
T ss_pred CccE-eecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEc
Confidence 9874 559999999999832110 00110 0112235667788
Q ss_pred ccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc
Q 019482 206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285 (340)
Q Consensus 206 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 285 (340)
+|+..+ +++++.|+.+++|+ ..+++ --+....+..++.|+|.| .++.|+..|...+.|.++...+..-..
T Consensus 377 hps~~q-----~~T~gqdk~v~lW~--~~k~~-wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d- 446 (626)
T KOG2106|consen 377 HPSKNQ-----LLTCGQDKHVRLWN--DHKLE-WTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD- 446 (626)
T ss_pred CCChhh-----eeeccCcceEEEcc--CCcee-EEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-
Confidence 888777 79999999999999 33333 233445688999999999 999999999999999999766654322
Q ss_pred ccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 286 HLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 286 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
+.+++.++|+|+|.+||.|+.|+.|+||.+...+
T Consensus 447 --~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g 480 (626)
T KOG2106|consen 447 --NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG 480 (626)
T ss_pred --CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC
Confidence 5799999999999999999999999999998655
No 132
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.95 E-value=1.6e-26 Score=191.38 Aligned_cols=293 Identities=14% Similarity=0.128 Sum_probs=212.2
Q ss_pred EEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCE
Q 019482 8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGC 87 (340)
Q Consensus 8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i 87 (340)
++..|++.+....+|+.+. .++.|.+++.......+ +.........|.+.|..+.|-|....|++++.|.++
T Consensus 53 f~~sFs~~~n~eHiLavad------E~G~i~l~dt~~~~fr~--ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~ 124 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVAD------EDGGIILFDTKSIVFRL--EERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTI 124 (720)
T ss_pred ccccccCCCCccceEEEec------CCCceeeecchhhhcch--hhhhhcccccccceeEeeccCCCceeEEEccCCcee
Confidence 6689999887778888777 55568888765333221 222224466799999999999966789999999999
Q ss_pred EEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCCce--------------------
Q 019482 88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRI-------------------- 146 (340)
Q Consensus 88 ~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~-------------------- 146 (340)
++||++..+....- ..+.|.+.|.+++|.| |...|++|+.||.|.|||++-...
T Consensus 125 r~Wdvk~s~l~G~~-----~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp 199 (720)
T KOG0321|consen 125 RPWDVKTSRLVGGR-----LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP 199 (720)
T ss_pred eeeeeccceeecce-----eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence 99999988765442 1235899999999999 556899999999999999853220
Q ss_pred -------eeccccCccceeE---EEecCCCCeEEEeeC-CCeEEEEEccCCeeEEEeec--------C--CCCceeeEEE
Q 019482 147 -------ILDEPKAHKSVLD---MDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLTR--------N--SDEKIELCRF 205 (340)
Q Consensus 147 -------~~~~~~~~~~i~~---~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~--------~--~~~~v~~~~~ 205 (340)
+..-..+...|.+ +.+..|...||+++. |+.|++||++.......... + ....+.++..
T Consensus 200 skp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l 279 (720)
T KOG0321|consen 200 SKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL 279 (720)
T ss_pred CchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe
Confidence 0011112223444 555667888998887 99999999997655433211 1 0123566777
Q ss_pred ccCCCcceEEEEEecCCcceEEEEECCCCc--EEeeeeccCC--CeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeec
Q 019482 206 SKDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRK--PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW 281 (340)
Q Consensus 206 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 281 (340)
...|.+ +++.+.|+.|++|++.+-. ++..+.++.. -...-..+||+.++++|+.|...++|.+.+.+....
T Consensus 280 DssGt~-----L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~ 354 (720)
T KOG0321|consen 280 DSSGTY-----LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA 354 (720)
T ss_pred cCCCCe-----EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh
Confidence 777787 5666669999999998643 3333333221 112234689999999999999999999999887777
Q ss_pred ccccccccceeeEEEecCC-eEEEEEecCCcEEEEEecC
Q 019482 282 SKRLHLGTSIALVEFCPTQ-RVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 282 ~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iw~~~~ 319 (340)
+..+| ...|+.++|.|.. .-++++++|..++||++..
T Consensus 355 ~l~Gh-t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 355 LLLGH-TREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred hhhCc-ceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 77788 6799999998843 4578889999999999953
No 133
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=5.8e-25 Score=187.39 Aligned_cols=286 Identities=20% Similarity=0.215 Sum_probs=217.6
Q ss_pred eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCC
Q 019482 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (340)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~ 86 (340)
|+++.--+. ..+=++.|. ..+.+.+|++. +....++++++...|+++.-+|-=+.+|.|..+|+
T Consensus 162 Ital~HP~T--YLNKIvvGs------~~G~lql~Nvr--------t~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ 225 (910)
T KOG1539|consen 162 ITALLHPST--YLNKIVVGS------SQGRLQLWNVR--------TGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGT 225 (910)
T ss_pred eeeEecchh--heeeEEEee------cCCcEEEEEec--------cCcEEEEecccccceeEeccCCcceEEEEeccCce
Confidence 555543332 234455555 55569999998 77788999999999999999999999999999999
Q ss_pred EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCe-EEEccCCCcEEEEeCCCCceeecccc-CccceeEEEecC
Q 019482 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSR-FAAGGVDGHLRIMHWPSLRIILDEPK-AHKSVLDMDFSL 164 (340)
Q Consensus 87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~ 164 (340)
|.+++++.++....+.. ..+.|+.++|..||+. +++|+..|.+.+||++..+.+..... |.+.+....|.|
T Consensus 226 ViifNlK~dkil~sFk~-------d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~ 298 (910)
T KOG1539|consen 226 VIIFNLKFDKILMSFKQ-------DWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP 298 (910)
T ss_pred EEEEEcccCcEEEEEEc-------cccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC
Confidence 99999999988776642 2489999999999984 56666779999999998776666653 336777777877
Q ss_pred CCCeEEEeeCCCeEEEEEccCCee-----------------EE-------------------------------------
Q 019482 165 DSEFLATTSTDGSARIWKTEDGVA-----------------WT------------------------------------- 190 (340)
Q Consensus 165 ~~~~l~~~~~d~~v~iwd~~~~~~-----------------~~------------------------------------- 190 (340)
....+++++.|+++++|=.+++.- +.
T Consensus 299 ~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~ 378 (910)
T KOG1539|consen 299 GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHN 378 (910)
T ss_pred CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccc
Confidence 777778877777777763331000 00
Q ss_pred ---------------------E--------------------------------------eecC----CCCceeeEEEcc
Q 019482 191 ---------------------F--------------------------------------LTRN----SDEKIELCRFSK 207 (340)
Q Consensus 191 ---------------------~--------------------------------------~~~~----~~~~v~~~~~~~ 207 (340)
. +... ....+++++.++
T Consensus 379 ~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~ 458 (910)
T KOG1539|consen 379 KKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF 458 (910)
T ss_pred ccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec
Confidence 0 0000 112355666666
Q ss_pred CCCcceEEEEEecCCcceEEEEECCCCcEEeee---eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecc--
Q 019482 208 DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS-- 282 (340)
Q Consensus 208 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-- 282 (340)
-|+. .+.|...|.|.+|++.+|-....+ ..|+.+|+.++...-++.+++++.+|.+++||.++...+..+
T Consensus 459 CGNF-----~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l 533 (910)
T KOG1539|consen 459 CGNF-----VFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL 533 (910)
T ss_pred cCce-----EEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc
Confidence 6665 677788999999999999877777 588999999999999999999999999999998875532211
Q ss_pred --------------------------------------cccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 283 --------------------------------------KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 283 --------------------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
..+| ++.|++++|||||++|++++.|++|++||+....
T Consensus 534 ~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh-~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 534 GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH-GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc-ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc
Confidence 1245 6799999999999999999999999999997644
No 134
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=1.1e-25 Score=170.16 Aligned_cols=290 Identities=15% Similarity=0.174 Sum_probs=217.0
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcc----cCCee---eEEEecCCCCeeEEEEcC-C
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY----TSPLV---TYVFDESEGDPMTIAVNP-S 74 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~----~~~~~---~~~~~~h~~~v~~~~~~~-~ 74 (340)
+++.|.++.-.+. .++++++|+ .++.|.+|++......-. ....+ ..--.+|.-.|..+.|-| |
T Consensus 42 HgGsvNsL~id~t--egrymlSGg------adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D 113 (397)
T KOG4283|consen 42 HGGSVNSLQIDLT--EGRYMLSGG------ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID 113 (397)
T ss_pred CCCccceeeeccc--cceEEeecC------CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec
Confidence 4566777777664 346777666 566699999975442111 11111 111246777899999999 5
Q ss_pred CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC---CCeEEEccCCCcEEEEeCCCCceeeccc
Q 019482 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGVDGHLRIMHWPSLRIILDEP 151 (340)
Q Consensus 75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 151 (340)
.-.+.+++-|.++++||..+.+....+. .++.|+.-+++|- ..++|+|..+-.|++-|+.+|.....+.
T Consensus 114 tGmFtssSFDhtlKVWDtnTlQ~a~~F~--------me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls 185 (397)
T KOG4283|consen 114 TGMFTSSSFDHTLKVWDTNTLQEAVDFK--------MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS 185 (397)
T ss_pred CceeecccccceEEEeecccceeeEEee--------cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec
Confidence 5588899999999999999877655543 4477888889882 4478889999999999999999999999
Q ss_pred cCccceeEEEecCCCCe-EEEeeCCCeEEEEEccCC-eeEEEee-------------cCCCCceeeEEEccCCCcceEEE
Q 019482 152 KAHKSVLDMDFSLDSEF-LATTSTDGSARIWKTEDG-VAWTFLT-------------RNSDEKIELCRFSKDGTKPFLFC 216 (340)
Q Consensus 152 ~~~~~i~~~~~~~~~~~-l~~~~~d~~v~iwd~~~~-~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~~~~ 216 (340)
+|.+.|.++.|+|...+ |++|+.||.|++||++.. .+...+. ..+.+.+..++|+.++.+
T Consensus 186 GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~----- 260 (397)
T KOG4283|consen 186 GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY----- 260 (397)
T ss_pred cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh-----
Confidence 99999999999997765 789999999999999864 3333322 234567999999999998
Q ss_pred EEecCCcceEEEEECCCCcEEeeee---ccCC----CeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccccc
Q 019482 217 TVQRGDKALLAVYDISTWNKIGHKR---LLRK----PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGT 289 (340)
Q Consensus 217 ~~~~~~d~~i~i~d~~~~~~~~~~~---~~~~----~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 289 (340)
+++.+.|..+++|+..+|+....-. .+.. .+. +. +-+...++.--.++.+.++++-.++.++.+ ..| ..
T Consensus 261 l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l-~~h-~k 336 (397)
T KOG4283|consen 261 LASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRL-STH-LK 336 (397)
T ss_pred hhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEee-ecc-cc
Confidence 7889999999999998876321111 1111 111 22 334445555556688999999999988877 456 67
Q ss_pred ceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482 290 SIALVEFCPTQRVVLTASKEWGAMITKL 317 (340)
Q Consensus 290 ~i~~~~~~~~~~~l~~~~~dg~i~iw~~ 317 (340)
.+.+.++-|+-+...++..|+.+..|..
T Consensus 337 ~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 337 RINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eeeEEeecCchhhhhccccCCccccccc
Confidence 8999999999999999999999999987
No 135
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.95 E-value=8.9e-27 Score=187.73 Aligned_cols=287 Identities=15% Similarity=0.165 Sum_probs=218.2
Q ss_pred CCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCC-eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCC
Q 019482 34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA 112 (340)
Q Consensus 34 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 112 (340)
...+++|++........ +.-....-.+.++.|+.... .+++.+.|..+++|.-............. ..
T Consensus 11 gd~~kl~D~s~~~~~~~------~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~-----~g 79 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSE------YVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKL-----TG 79 (673)
T ss_pred CCceEEeecccccCccc------cccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeecc-----cc
Confidence 34589999874433221 10011122388999986654 23344567788899765442211111111 11
Q ss_pred CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEe
Q 019482 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL 192 (340)
Q Consensus 113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~ 192 (340)
..-.|++......|+++|+..+.|+|||++...+...+..|...|+++.++-...+||+++..|.|.|..+.++.....+
T Consensus 80 d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f 159 (673)
T KOG4378|consen 80 DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF 159 (673)
T ss_pred chHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccce
Confidence 23455555555689999999999999999976677777788889999999999999999999999999999999888888
Q ss_pred ecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee-eeccCCCeeEEEECCC-CCEEEEeeCCCcEEE
Q 019482 193 TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRLLRKPASVLSISLD-GKYLAMGSKDGDICV 270 (340)
Q Consensus 193 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i 270 (340)
.......+.-+.|+|..+.+ +.+++++|.|.+||+....++.. ...|..+...++|+|. ..+|++.+.|.+|.+
T Consensus 160 ~~~sgqsvRll~ys~skr~l----L~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~ 235 (673)
T KOG4378|consen 160 TIDSGQSVRLLRYSPSKRFL----LSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINI 235 (673)
T ss_pred ecCCCCeEEEeeccccccee----eEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEE
Confidence 76656677899999998764 68889999999999998776644 4578889999999994 577888999999999
Q ss_pred EeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccCC
Q 019482 271 VDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSVS 340 (340)
Q Consensus 271 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~vs 340 (340)
||....+....+.. ..|...++|+++|.+|+.|+..|.+..||+..... ++...-.|...|.+||
T Consensus 236 yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~--Pv~v~sah~~sVt~va 300 (673)
T KOG4378|consen 236 YDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA--PVAVRSAHDASVTRVA 300 (673)
T ss_pred eecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCC--CceEeeecccceeEEE
Confidence 99998776655544 34899999999999999999999999999986553 6777888888887764
No 136
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.2e-25 Score=184.16 Aligned_cols=266 Identities=13% Similarity=0.157 Sum_probs=216.2
Q ss_pred cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEe
Q 019482 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH 140 (340)
Q Consensus 61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d 140 (340)
--..+|.++||+.+.+.||.+-.+|.|.+|++..+-........ +....|.+++|++. ..|++.+.+|.|.-||
T Consensus 23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g-----~~drsIE~L~W~e~-~RLFS~g~sg~i~EwD 96 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG-----PEDRSIESLAWAEG-GRLFSSGLSGSITEWD 96 (691)
T ss_pred eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec-----CCCCceeeEEEccC-CeEEeecCCceEEEEe
Confidence 34678999999999999999999999999999886555444432 25578999999954 4677888899999999
Q ss_pred CCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee-cCCCCceeeEEEccCCCcceEEEEEe
Q 019482 141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT-RNSDEKIELCRFSKDGTKPFLFCTVQ 219 (340)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~ 219 (340)
+.+++.........+.|.+++.+|.+..++.|+.||.+..++...++...... ....+.+.+++|+|++.. ++.
T Consensus 97 l~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~-----i~~ 171 (691)
T KOG2048|consen 97 LHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK-----IAG 171 (691)
T ss_pred cccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE-----EEe
Confidence 99999988887777899999999999999999999988888887776654433 233478999999999998 899
Q ss_pred cCCcceEEEEECCCCcEEeeee-----cc---CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccce
Q 019482 220 RGDKALLAVYDISTWNKIGHKR-----LL---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI 291 (340)
Q Consensus 220 ~~~d~~i~i~d~~~~~~~~~~~-----~~---~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i 291 (340)
|+.||.|++||..+++.+.... .. ..-|+++.+-.+ ..|++|..-|.|.+||...+..++... .| ...|
T Consensus 172 Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~-~h-~adV 248 (691)
T KOG2048|consen 172 GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHS-CH-DADV 248 (691)
T ss_pred cccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhh-hh-hcce
Confidence 9999999999999998765211 11 123566666544 478999999999999999999887763 55 5789
Q ss_pred eeEEEecCCeEEEEEecCCcEEEEEecCCCC-CCCCccccccccccccCC
Q 019482 292 ALVEFCPTQRVVLTASKEWGAMITKLTVPAD-WKGLSLPLLHSHSQNSVS 340 (340)
Q Consensus 292 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~h~~~v~~vs 340 (340)
.+++..+++.+++++|.|+.+..+....... |........|.+.|.+++
T Consensus 249 l~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~a 298 (691)
T KOG2048|consen 249 LALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMA 298 (691)
T ss_pred eEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeee
Confidence 9999999999999999999999998876543 555667778888887764
No 137
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.8e-27 Score=208.02 Aligned_cols=303 Identities=18% Similarity=0.209 Sum_probs=228.3
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCC----cccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCe---
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSR----ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDD--- 77 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~----~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--- 77 (340)
.+--.++|+|+.. .+++.|...+ +-+.+..++||.++.........+. -.+. -....+.++|.+.|..
T Consensus 7 ~Rta~~awSp~~~--~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~--~s~~-s~~rF~kL~W~~~g~~~~G 81 (1049)
T KOG0307|consen 7 SRTATFAWSPASP--PLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPV--GSLQ-SSNRFNKLAWGSYGSHSHG 81 (1049)
T ss_pred cccceEEecCCCc--hhhHHHhhhhccccccccccccceeeecccCcccccccc--cccc-ccccceeeeecccCCCccc
Confidence 3445689999753 4666666544 2356788999998855544311111 1111 2456889999997775
Q ss_pred -EEEEecCCCEEEEEecCc--eeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeCCCCceeeccc--
Q 019482 78 -FVCSTTNGGCKLFEVYGG--ATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEP-- 151 (340)
Q Consensus 78 -l~~~~~d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~-- 151 (340)
||.|..||.|.+||...- ......+. ..-.|.+.|..+.|++. +++|++|+.||.|.|||+...+......
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la---~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~ 158 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLA---TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQ 158 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHh---hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCC
Confidence 888999999999998763 11111111 11248999999999995 4599999999999999998766554432
Q ss_pred cCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCC-CceeeEEEccCCCcceEEEEEecCC---cceE
Q 019482 152 KAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD-EKIELCRFSKDGTKPFLFCTVQRGD---KALL 226 (340)
Q Consensus 152 ~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~---d~~i 226 (340)
...+.|.+++|+. ....|++++.+|.+.|||++..+++..+..... ..+..++|+|++... ++++++ .-.|
T Consensus 159 ~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq----l~~As~dd~~Pvi 234 (1049)
T KOG0307|consen 159 APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ----LLVASGDDSAPVI 234 (1049)
T ss_pred CCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee----eeeecCCCCCcee
Confidence 2345899999998 566799999999999999999888877764433 347899999998654 333333 3579
Q ss_pred EEEECCCCc-EEeeeeccCCCeeEEEECCCC-CEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCe-EE
Q 019482 227 AVYDISTWN-KIGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VV 303 (340)
Q Consensus 227 ~i~d~~~~~-~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l 303 (340)
.+||+|... +++.+..|...|.++.|++.+ +++++++.|+.|.+|+.++++.+..+.. . ++.+..+.|.|... .+
T Consensus 235 qlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~-~-~nW~fdv~w~pr~P~~~ 312 (1049)
T KOG0307|consen 235 QLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA-Q-GNWCFDVQWCPRNPSVM 312 (1049)
T ss_pred EeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC-C-CcceeeeeecCCCcchh
Confidence 999998654 667788999999999999955 8999999999999999999999988754 2 57899999999775 88
Q ss_pred EEEecCCcEEEEEecCCC
Q 019482 304 LTASKEWGAMITKLTVPA 321 (340)
Q Consensus 304 ~~~~~dg~i~iw~~~~~~ 321 (340)
+.++-||.|.|+.+....
T Consensus 313 A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 313 AAASFDGKISIYSLQGTD 330 (1049)
T ss_pred hhheeccceeeeeeecCC
Confidence 999999999999997554
No 138
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.95 E-value=2.7e-25 Score=167.69 Aligned_cols=296 Identities=11% Similarity=0.134 Sum_probs=215.6
Q ss_pred CCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCC-----
Q 019482 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD----- 76 (340)
Q Consensus 2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----- 76 (340)
+...+++++.|+..+.....+|.|+-..- ..|+|.|..++....++..... ..|.-+++.+.|.|+..
T Consensus 42 ~ap~~lya~~Ws~~~~~~~rla~gS~~Ee--~~Nkvqiv~ld~~s~e~~~~a~-----fd~~YP~tK~~wiPd~~g~~pd 114 (364)
T KOG0290|consen 42 NAPWPLYAMNWSVRPDKKFRLAVGSFIEE--YNNKVQIVQLDEDSGELVEDAN-----FDHPYPVTKLMWIPDSKGVYPD 114 (364)
T ss_pred cCCCceeeeccccCCCcceeEEEeeeccc--cCCeeEEEEEccCCCceeccCC-----CCCCCCccceEecCCccccCcc
Confidence 34678999999987766778888886554 6799999999866655543322 35888999999999763
Q ss_pred eEEEEecCCCEEEEEecCceee--eeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCCc---eeecc
Q 019482 77 DFVCSTTNGGCKLFEVYGGATD--INLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLR---IILDE 150 (340)
Q Consensus 77 ~l~~~~~d~~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~---~~~~~ 150 (340)
+||+ +.|. +++|.+...+.. ...........++..++++..|+. +.++|.+.+-|.+..|||++++. ....+
T Consensus 115 lLAT-s~D~-LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL 192 (364)
T KOG0290|consen 115 LLAT-SSDF-LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL 192 (364)
T ss_pred hhhc-ccCe-EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE
Confidence 4554 4444 999999743221 111111112334678999999988 78899999999999999999863 35567
Q ss_pred ccCccceeEEEecCCC-CeEEEeeCCCeEEEEEccCCeeEEEee-cCC-CCceeeEEEccCCCcceEEEEEecCCcceEE
Q 019482 151 PKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLT-RNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227 (340)
Q Consensus 151 ~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~ 227 (340)
..|.++|..++|...+ +.|++.+.||+||+||++..+--..+. ... ..+...++|++..... + .....+...|.
T Consensus 193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpny-m--ATf~~dS~~V~ 269 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNY-M--ATFAMDSNKVV 269 (364)
T ss_pred EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchH-H--hhhhcCCceEE
Confidence 7888999999999855 479999999999999998754433332 122 4577888998876652 2 23334567799
Q ss_pred EEECCCC-cEEeeeeccCCCeeEEEECCC-CCEEEEeeCCCcEEEEeccCceE---eecccccccccceeeEEEec-CCe
Q 019482 228 VYDISTW-NKIGHKRLLRKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEI---NHWSKRLHLGTSIALVEFCP-TQR 301 (340)
Q Consensus 228 i~d~~~~-~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~i~~~~~~~-~~~ 301 (340)
+.|+|.. .++..++.|.+.|+.++|.|. ...|++++.|..+.+||+...-. ...+.....+..|+.+.|++ ...
T Consensus 270 iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~D 349 (364)
T KOG0290|consen 270 ILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPD 349 (364)
T ss_pred EEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCC
Confidence 9999975 477889999999999999995 57899999999999999976322 00111111256899999996 457
Q ss_pred EEEEEecC
Q 019482 302 VVLTASKE 309 (340)
Q Consensus 302 ~l~~~~~d 309 (340)
+++.+...
T Consensus 350 wiai~~~k 357 (364)
T KOG0290|consen 350 WIAICFGK 357 (364)
T ss_pred EEEEEecC
Confidence 78777654
No 139
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.6e-25 Score=177.99 Aligned_cols=288 Identities=12% Similarity=0.139 Sum_probs=206.3
Q ss_pred cEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC-------CCCeEEEEecCCCEEEEEe
Q 019482 20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-------SGDDFVCSTTNGGCKLFEV 92 (340)
Q Consensus 20 ~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------~~~~l~~~~~d~~i~iw~~ 92 (340)
++++++.. -.....+.+|-++.....+.- ...+.+ .....|++|.. .|+++|.|+.|..|.|||+
T Consensus 138 nlIl~ar~---eddvs~LEvYVyn~~e~nlYv--HHD~il---pafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDL 209 (463)
T KOG0270|consen 138 NLILCARN---EDDVSYLEVYVYNEEEENLYV--HHDFIL---PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDL 209 (463)
T ss_pred cEEEEeec---cCCceEEEEEEEcCCCcceeE--ecceec---cCcchhhhhhhcCCCCCCCcceEEEeccCceeEEecc
Confidence 45554443 224456888888755422210 000011 13356777743 3579999999999999998
Q ss_pred cCceeeeee--cc------------ccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeCCCCceeeccccCccce
Q 019482 93 YGGATDINL--LA------------KKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV 157 (340)
Q Consensus 93 ~~~~~~~~~--~~------------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i 157 (340)
+-....... +. +......|...|..++|+.. .+.||+|+.|.+|++||+.++++...+..|.+.|
T Consensus 210 DI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~V 289 (463)
T KOG0270|consen 210 DIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKV 289 (463)
T ss_pred ccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCce
Confidence 643211110 00 11112247788889999885 4589999999999999999999998888778899
Q ss_pred eEEEecC-CCCeEEEeeCCCeEEEEEccCCeeE-EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC-
Q 019482 158 LDMDFSL-DSEFLATTSTDGSARIWKTEDGVAW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW- 234 (340)
Q Consensus 158 ~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~- 234 (340)
.+++|+| ....|++|+.|++|.+.|.|..... ..++ ..+.|..++|.|..... ++.+..||.++-+|+|+.
T Consensus 290 q~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk--~~g~VEkv~w~~~se~~----f~~~tddG~v~~~D~R~~~ 363 (463)
T KOG0270|consen 290 QTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK--FDGEVEKVAWDPHSENS----FFVSTDDGTVYYFDIRNPG 363 (463)
T ss_pred eEEEecCCCceEEEeccccceEEeeeccCccccCceEE--eccceEEEEecCCCcee----EEEecCCceEEeeecCCCC
Confidence 9999999 6778999999999999999953222 2222 34679999999988764 577789999999999986
Q ss_pred cEEeeeeccCCCeeEEEECCC-CCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCC-eEEEEEecCCcE
Q 019482 235 NKIGHKRLLRKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ-RVVLTASKEWGA 312 (340)
Q Consensus 235 ~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i 312 (340)
+++..+..|..+|.++++++. ..++++++.|+.|++|++..............-+...+.++.|+- -+++.|+..+.+
T Consensus 364 ~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~ 443 (463)
T KOG0270|consen 364 KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVL 443 (463)
T ss_pred CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceE
Confidence 789999999999999999885 467889999999999999765443222111112346677777865 457778778889
Q ss_pred EEEEecCCC
Q 019482 313 MITKLTVPA 321 (340)
Q Consensus 313 ~iw~~~~~~ 321 (340)
+||++....
T Consensus 444 ~vwd~~~~~ 452 (463)
T KOG0270|consen 444 RVWDIFTNS 452 (463)
T ss_pred EEeecccCh
Confidence 999997544
No 140
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.1e-25 Score=188.22 Aligned_cols=244 Identities=14% Similarity=0.143 Sum_probs=202.1
Q ss_pred CeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEE-EEEec-CCCeEEEc
Q 019482 53 PLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC-LSFSV-DGSRFAAG 130 (340)
Q Consensus 53 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~l~~~ 130 (340)
..+.+++.+|...|..++..+ +..++++++||++++|+-...+...... ...+.+-|.+ ++|-+ ++-.+++|
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~-----~~~~~g~i~~~i~y~e~~~~~l~~g 77 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHA-----FEGPKGFIANSICYAESDKGRLVVG 77 (745)
T ss_pred ceeEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCccccccee-----cccCcceeeccceeccccCcceEee
Confidence 345678999999999999874 4479999999999999986655433111 1124555555 77765 45569999
Q ss_pred cCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCC
Q 019482 131 GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210 (340)
Q Consensus 131 ~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (340)
+.|++|.+|.+.+..+...+.+|...|.++....++. +++||.|.++++|-. +++...+. .|...|+++..-|++.
T Consensus 78 ~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~-gH~asVWAv~~l~e~~ 153 (745)
T KOG0301|consen 78 GMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQ-GHTASVWAVASLPENT 153 (745)
T ss_pred cccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccC-CcchheeeeeecCCCc
Confidence 9999999999999999999999999999999887776 999999999999976 45555666 4557899999999996
Q ss_pred cceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccc
Q 019482 211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS 290 (340)
Q Consensus 211 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 290 (340)
+++++.|..|++|.- ++.++.+.+|...|+.+++-|++ .+++++.||.|++|++ +++.+... .+| ...
T Consensus 154 ------~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~-~gh-tn~ 221 (745)
T KOG0301|consen 154 ------YVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEM-HGH-TNF 221 (745)
T ss_pred ------EEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeee-ecc-ceE
Confidence 699999999999987 66778899999999999998875 5678889999999999 66666655 467 679
Q ss_pred eeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 291 IALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 291 i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
+.+++..+++..++++++|++++||+..
T Consensus 222 vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 222 VYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEEEEecCCCCeEEEecCCceEEEeecC
Confidence 9999988888999999999999999976
No 141
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=5.2e-24 Score=176.10 Aligned_cols=260 Identities=15% Similarity=0.138 Sum_probs=183.8
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEE-ec
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TT 83 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~~ 83 (340)
..+.+++|+|+.. .+++.++ .++.+.+|+... ......+..+. .+..++|+|+++.++++ ..
T Consensus 31 ~~~~~l~~~~dg~--~l~~~~~------~~~~v~~~d~~~--------~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~ 93 (300)
T TIGR03866 31 QRPRGITLSKDGK--LLYVCAS------DSDTIQVIDLAT--------GEVIGTLPSGP-DPELFALHPNGKILYIANED 93 (300)
T ss_pred CCCCceEECCCCC--EEEEEEC------CCCeEEEEECCC--------CcEEEeccCCC-CccEEEECCCCCEEEEEcCC
Confidence 3466788988533 3434433 456699998762 22222333333 35678999999977655 56
Q ss_pred CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC-cEEEEeCCCCceeeccccCccceeEEEe
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-HLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 162 (340)
++.+++||+.+.+....+. ....+.+++|+|++++++++..++ .+.+||.++++....... ......+.|
T Consensus 94 ~~~l~~~d~~~~~~~~~~~--------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~ 164 (300)
T TIGR03866 94 DNLVTVIDIETRKVLAEIP--------VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEF 164 (300)
T ss_pred CCeEEEEECCCCeEEeEee--------CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEE
Confidence 7899999998766544332 223467899999999999888765 467789887766543322 234578999
Q ss_pred cCCCCeEEEe-eCCCeEEEEEccCCeeEEEeecCC------CCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc
Q 019482 163 SLDSEFLATT-STDGSARIWKTEDGVAWTFLTRNS------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (340)
Q Consensus 163 ~~~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~ 235 (340)
+|++++++++ ..++.|++||+++++.+..+.... ......++|+|+++.. +++.+.++.+.+||.++++
T Consensus 165 s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~----~~~~~~~~~i~v~d~~~~~ 240 (300)
T TIGR03866 165 TADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTA----FVALGPANRVAVVDAKTYE 240 (300)
T ss_pred CCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEE----EEEcCCCCeEEEEECCCCc
Confidence 9999987544 468999999999988776654221 1123568899999963 2334556789999999888
Q ss_pred EEeeeeccCCCeeEEEECCCCCEEEEe-eCCCcEEEEeccCceEeecccccccccceeeEEEec
Q 019482 236 KIGHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298 (340)
Q Consensus 236 ~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~ 298 (340)
.+.... +...+.+++|+|+|++|+++ ..+|.|++||+.+++.+..+.. +...++++++|
T Consensus 241 ~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~ 300 (300)
T TIGR03866 241 VLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV---GRLPWGVVVRP 300 (300)
T ss_pred EEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc---ccccceeEeCC
Confidence 765443 34578899999999999886 4589999999999998877753 34568888875
No 142
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.3e-25 Score=177.88 Aligned_cols=262 Identities=17% Similarity=0.223 Sum_probs=200.7
Q ss_pred CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCC-eEEEccCCCcEEEEeC
Q 019482 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHW 141 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~ 141 (340)
.+.|+++.|+|.-..+++++.|+.++||.++..... .+..-.. ...+|.+..|.|+|+ .+++++....++.||+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-~lqS~~l----~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-KLQSIHL----EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-hheeeee----ccCccceeeecCCCceEEEecccceEEEEeec
Confidence 367999999999999999999999999999765432 1111111 346899999999999 8999999999999999
Q ss_pred CCCceeec--cccCc-cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEE
Q 019482 142 PSLRIILD--EPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218 (340)
Q Consensus 142 ~~~~~~~~--~~~~~-~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 218 (340)
.+.+.... ..++. ..+.....+|++++|+..+..|.|.+....+++.+..++ ..+.+..+.|+.+++. ++
T Consensus 288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSdsk~-----l~ 360 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDSKE-----LL 360 (514)
T ss_pred cccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecCCcE-----EE
Confidence 88764322 22222 257888999999999999999999999999999999887 3467999999999987 77
Q ss_pred ecCCcceEEEEECCCCcEEeeeeccCC-CeeEEEECCCCCEEEEeeCCCcEEEEeccC------ceEeecccccccccce
Q 019482 219 QRGDKALLAVYDISTWNKIGHKRLLRK-PASVLSISLDGKYLAMGSKDGDICVVDVKK------MEINHWSKRLHLGTSI 291 (340)
Q Consensus 219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~~i 291 (340)
.++.+|.|.+||++...++..+...++ .-++++.++++.|||+|+..|.|.|||.++ .+++..+. .....|
T Consensus 361 ~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d--NLtt~I 438 (514)
T KOG2055|consen 361 ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD--NLTTAI 438 (514)
T ss_pred EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh--hhheee
Confidence 788899999999999988777665432 346778889999999999999999999764 23333332 224689
Q ss_pred eeEEEecCCeEEEEEec--CCcEEEEEecCCCCCCCCcccccccccccc
Q 019482 292 ALVEFCPTQRVVLTASK--EWGAMITKLTVPADWKGLSLPLLHSHSQNS 338 (340)
Q Consensus 292 ~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~ 338 (340)
++++|+||.+.||.+|. ...+++-.++.-.-++.++.....-+.|++
T Consensus 439 tsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc 487 (514)
T KOG2055|consen 439 TSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTC 487 (514)
T ss_pred eeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEE
Confidence 99999999999988886 456777666544434444433333333443
No 143
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=1.7e-25 Score=169.20 Aligned_cols=206 Identities=15% Similarity=0.197 Sum_probs=169.3
Q ss_pred CCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCCc------------ee---eccccCccceeEEEecC-CCCeEEEee
Q 019482 111 DAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLR------------II---LDEPKAHKSVLDMDFSL-DSEFLATTS 173 (340)
Q Consensus 111 ~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~------------~~---~~~~~~~~~i~~~~~~~-~~~~l~~~~ 173 (340)
|.+.|..+...+ .|+|+++|+.||.|.+||++... ++ .....|.-.|..+.|-| |..++.+++
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS 121 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS 121 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence 778899999988 79999999999999999997533 11 01122334799999999 777899999
Q ss_pred CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEEC
Q 019482 174 TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS 253 (340)
Q Consensus 174 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s 253 (340)
.|.++++||..+-+....+. .++.|++-+++|-.....| ++++..+-+|++-|+.+|..-..+.+|...|.++.|+
T Consensus 122 FDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcL--iA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 122 FDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCL--IAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred ccceEEEeecccceeeEEee--cCceeehhhcChhhhcceE--EEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 99999999999988888876 4567999999997653333 6888899999999999999999999999999999999
Q ss_pred CCCCE-EEEeeCCCcEEEEeccCc-eEee-----------c--ccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 254 LDGKY-LAMGSKDGDICVVDVKKM-EINH-----------W--SKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 254 ~~~~~-l~~~~~dg~i~i~d~~~~-~~~~-----------~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
|...+ |++|+.||.|++||++.. .+.. . ....| .+.+++++|+.|+.++++++.|..+++|+..
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah-~gkvngla~tSd~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAH-YGKVNGLAWTSDARYLASCGTDDRIRVWNME 276 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccc-cceeeeeeecccchhhhhccCccceEEeecc
Confidence 97765 678999999999999753 1111 1 12334 5789999999999999999999999999997
Q ss_pred CCC
Q 019482 319 VPA 321 (340)
Q Consensus 319 ~~~ 321 (340)
...
T Consensus 277 ~G~ 279 (397)
T KOG4283|consen 277 SGR 279 (397)
T ss_pred cCc
Confidence 654
No 144
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=4.9e-27 Score=197.03 Aligned_cols=214 Identities=15% Similarity=0.210 Sum_probs=188.8
Q ss_pred cCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCC
Q 019482 32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD 111 (340)
Q Consensus 32 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 111 (340)
|.+..+.+|... .+.....|.+|+.+|.++.|+++..+|++|+.+|+|++||++.......+.+ |
T Consensus 47 g~~~k~~L~~i~--------kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtg-------h 111 (825)
T KOG0267|consen 47 GEDEKVNLWAIG--------KPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTG-------H 111 (825)
T ss_pred CCceeecccccc--------CCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhc-------c
Confidence 356668888776 4444456899999999999999999999999999999999998776665543 7
Q ss_pred CCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEE
Q 019482 112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF 191 (340)
Q Consensus 112 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~ 191 (340)
...+..+.|+|-+.+.+.|+.|+.+++||++...+...+.+|...+..+.|+|+|++++.++.|.+++|||...|+....
T Consensus 112 ~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~e 191 (825)
T KOG0267|consen 112 LLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKE 191 (825)
T ss_pred ccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccc
Confidence 78999999999999999999999999999998888888888888899999999999999999999999999999999988
Q ss_pred eecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCC
Q 019482 192 LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG 266 (340)
Q Consensus 192 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 266 (340)
+.. +.+.+.++.|+|..-. +..++.|+++++||+++.+.+.........|.+..|+|+++.+++|....
T Consensus 192 f~~-~e~~v~sle~hp~e~L-----la~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 192 FKS-HEGKVQSLEFHPLEVL-----LAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ccc-ccccccccccCchhhh-----hccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 874 4578999999998765 78999999999999999888888777788999999999999999886653
No 145
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.94 E-value=2.6e-25 Score=179.39 Aligned_cols=267 Identities=18% Similarity=0.232 Sum_probs=206.2
Q ss_pred eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCC
Q 019482 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (340)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~ 86 (340)
++++.|+..+. ++..+ .+.+..+.+|.-+...... |... .+.+ +.-.|++......|+++|+..+.
T Consensus 37 ~~s~~w~~~n~----lvvas----~~gdk~~~~~~K~g~~~~V---p~~~-k~~g--d~~~Cv~~~s~S~y~~sgG~~~~ 102 (673)
T KOG4378|consen 37 DFSFNWQRRNF----LVVAS----MAGDKVMRIKEKDGKTPEV---PRVR-KLTG--DNAFCVACASQSLYEISGGQSGC 102 (673)
T ss_pred ceeeeccccce----EEEee----cCCceeEEEecccCCCCcc---ceee-cccc--chHHHHhhhhcceeeeccCcCce
Confidence 88999998432 33333 3356678888765442222 2211 1222 23445555555689999999999
Q ss_pred EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCcc-ceeEEEecCC
Q 019482 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLD 165 (340)
Q Consensus 87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~ 165 (340)
|+|||++...+...+. .|...|+++.++....|||+++..|.|.+..+.++.....+....+ .+.-+.++|.
T Consensus 103 Vkiwdl~~kl~hr~lk-------dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~s 175 (673)
T KOG4378|consen 103 VKIWDLRAKLIHRFLK-------DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPS 175 (673)
T ss_pred eeehhhHHHHHhhhcc-------CCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccc
Confidence 9999998544333322 3789999999999999999999999999999998887766654433 5778999997
Q ss_pred CCe-EEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC
Q 019482 166 SEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244 (340)
Q Consensus 166 ~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 244 (340)
.+. |.+++.+|.|.+||+....++..+...|..+...++|+|....+ +++.+.|..|.+||.+..+....+. ..
T Consensus 176 kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l----~vsVG~Dkki~~yD~~s~~s~~~l~-y~ 250 (673)
T KOG4378|consen 176 KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL----LVSVGYDKKINIYDIRSQASTDRLT-YS 250 (673)
T ss_pred cceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce----EEEecccceEEEeecccccccceee-ec
Confidence 664 66788999999999999889888888888999999999998864 6888999999999999766544433 35
Q ss_pred CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCC
Q 019482 245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300 (340)
Q Consensus 245 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 300 (340)
.+...++|+++|.+|+.|+..|.|..||++..+........| ...|++++|-|.-
T Consensus 251 ~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah-~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 251 HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH-DASVTRVAFQPSP 305 (673)
T ss_pred CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec-ccceeEEEeeecc
Confidence 689999999999999999999999999999877665666777 5789999998864
No 146
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=6.6e-25 Score=171.15 Aligned_cols=256 Identities=14% Similarity=0.174 Sum_probs=187.3
Q ss_pred CCeeeEEEecCCCCeeEEEEcCCCC--eEEEEecCCCEEEEEecCcee-------eeee-cccc-CCCCCCCCCeEEEEE
Q 019482 52 SPLVTYVFDESEGDPMTIAVNPSGD--DFVCSTTNGGCKLFEVYGGAT-------DINL-LAKK-MPPLQDAGPQKCLSF 120 (340)
Q Consensus 52 ~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~d~~i~iw~~~~~~~-------~~~~-~~~~-~~~~~~~~~v~~~~~ 120 (340)
.|......-.|.+.++.+.-++-++ +.++=+..|.|+||++...-. .... ...+ .....|...=+.+.|
T Consensus 140 ~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdW 219 (440)
T KOG0302|consen 140 KPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDW 219 (440)
T ss_pred cccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeec
Confidence 3556666677889999998888654 555667789999999854211 0000 0000 111236677789999
Q ss_pred ecC-CCeEEEccCCCcEEEEeCCCCcee---eccccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeE-EEeec
Q 019482 121 SVD-GSRFAAGGVDGHLRIMHWPSLRII---LDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAW-TFLTR 194 (340)
Q Consensus 121 ~~~-~~~l~~~~~dg~i~~~d~~~~~~~---~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~ 194 (340)
||- --.|++|..-+.|++|...++.-. .-+.+|...|..++|+| ....|++||.||+|+|||+|.+... ..+..
T Consensus 220 Sp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~k 299 (440)
T KOG0302|consen 220 SPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTK 299 (440)
T ss_pred ccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEee
Confidence 992 225888888899999998876533 23556888999999999 5568999999999999999987322 22224
Q ss_pred CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC---CcEEeeeeccCCCeeEEEECCC-CCEEEEeeCCCcEEE
Q 019482 195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST---WNKIGHKRLLRKPASVLSISLD-GKYLAMGSKDGDICV 270 (340)
Q Consensus 195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i 270 (340)
.|...|+-+.|+..-.. ++++++||+++|||+|+ ++++..++.|..+|+++.|+|. ...|++++.|.+|.|
T Consensus 300 Ah~sDVNVISWnr~~~l-----LasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qiti 374 (440)
T KOG0302|consen 300 AHNSDVNVISWNRREPL-----LASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITI 374 (440)
T ss_pred ccCCceeeEEccCCcce-----eeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEE
Confidence 56678999999988774 89999999999999986 4578899999999999999994 567888899999999
Q ss_pred EeccCceE---------------eecccccc-cccceeeEEEecCC-eEEEEEecCCcE
Q 019482 271 VDVKKMEI---------------NHWSKRLH-LGTSIALVEFCPTQ-RVVLTASKEWGA 312 (340)
Q Consensus 271 ~d~~~~~~---------------~~~~~~~~-~~~~i~~~~~~~~~-~~l~~~~~dg~i 312 (340)
||+....- ...+...| .+..+..+.|++.- .+|++.+.||--
T Consensus 375 WDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfn 433 (440)
T KOG0302|consen 375 WDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFN 433 (440)
T ss_pred EEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccccee
Confidence 99853111 11122233 23578899999865 477888888743
No 147
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.94 E-value=9.5e-25 Score=167.42 Aligned_cols=292 Identities=13% Similarity=0.140 Sum_probs=208.1
Q ss_pred CCCceeEEeeeee--cCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCC----C
Q 019482 2 EGGGTVTCGSWIK--RPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS----G 75 (340)
Q Consensus 2 ~~~~~v~~~~w~~--~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~ 75 (340)
.++-+|+.++|++ .-++.+++|+.| .+.+.+|+...+.... ......-..|+.....++|+-+ .
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG-------~~rvtiy~c~~d~~ir---~lq~y~D~d~~Esfytcsw~yd~~~~~ 105 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVG-------GNRVTIYECPGDGGIR---LLQSYADEDHDESFYTCSWSYDSNTGN 105 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeC-------CcEEEEEEECCcccee---eeeeccCCCCCcceEEEEEEecCCCCC
Confidence 4567899999996 222335555444 3458888887655211 1111222247778888998753 3
Q ss_pred CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeCCCCceeecc---c
Q 019482 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDE---P 151 (340)
Q Consensus 76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~---~ 151 (340)
.++|+++.-|.|+|.|+.+++....+.. |...|..+.+.|+ .+++++++.|..|++|++++..++..+ .
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~~g-------hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~e 178 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNYRG-------HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVE 178 (385)
T ss_pred eeEEeecceeEEEEEecchhhhccceec-------cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccc
Confidence 4889999999999999998887766654 8899999999995 578999999999999999999887654 4
Q ss_pred cCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEe---------------------------ecCCCCceeeEE
Q 019482 152 KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL---------------------------TRNSDEKIELCR 204 (340)
Q Consensus 152 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~---------------------------~~~~~~~v~~~~ 204 (340)
+|.+.|.++.|+++|.+|++++.|.++++|++...+....+ ...|...|.|+.
T Consensus 179 gHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvr 258 (385)
T KOG1034|consen 179 GHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVR 258 (385)
T ss_pred cccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHH
Confidence 57779999999999999999999999999999743211111 011223344444
Q ss_pred EccCCCcceEEEEEecCCcceEEEEECCC-Cc-------------EEeeeeccCCCeeEEE--ECCCCCEEEEeeCCCcE
Q 019482 205 FSKDGTKPFLFCTVQRGDKALLAVYDIST-WN-------------KIGHKRLLRKPASVLS--ISLDGKYLAMGSKDGDI 268 (340)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~-------------~~~~~~~~~~~i~~~~--~s~~~~~l~~~~~dg~i 268 (340)
|-- .+ +++-+-++.|..|.... .+ .+..+......|.-+. |.|-++.||.|.+.|.|
T Consensus 259 w~g--d~-----ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v 331 (385)
T KOG1034|consen 259 WFG--DF-----ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKV 331 (385)
T ss_pred HHh--hh-----eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcE
Confidence 432 22 57777788999998721 11 1233333445565554 45668999999999999
Q ss_pred EEEeccCceEeecccccc--cccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482 269 CVVDVKKMEINHWSKRLH--LGTSIALVEFCPTQRVVLTASKEWGAMITKL 317 (340)
Q Consensus 269 ~i~d~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~ 317 (340)
++||++..++.......| .+..|...+|+.|+..|+...+|+.|--|+.
T Consensus 332 ~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 332 YVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred EEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 999999876642221111 2468999999999999999999998877764
No 148
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.94 E-value=1.2e-24 Score=166.67 Aligned_cols=269 Identities=14% Similarity=0.096 Sum_probs=198.4
Q ss_pred CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeee----e--ccccCCCCCCCCCeEEEEEe-------cCCCeEEEcc
Q 019482 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN----L--LAKKMPPLQDAGPQKCLSFS-------VDGSRFAAGG 131 (340)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~----~--~~~~~~~~~~~~~v~~~~~~-------~~~~~l~~~~ 131 (340)
-...+.|+|||..|++-+.|..+.+|++........ . .............|..-+|- |+..++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 356789999999999999999999999854321111 0 00001111234567777775 5667999999
Q ss_pred CCCcEEEEeCCCCceeecccc--Ccc---ceeEEEecCCCCeEEEeeCCCeEEEEEc-cCCeeEEE---e---ecCCCCc
Q 019482 132 VDGHLRIMHWPSLRIILDEPK--AHK---SVLDMDFSLDSEFLATTSTDGSARIWKT-EDGVAWTF---L---TRNSDEK 199 (340)
Q Consensus 132 ~dg~i~~~d~~~~~~~~~~~~--~~~---~i~~~~~~~~~~~l~~~~~d~~v~iwd~-~~~~~~~~---~---~~~~~~~ 199 (340)
++.-|.+||.-+|+....+.. |.+ ...+++|+|||.+|++|- ...|++||+ +.|.-... + +....+.
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 999999999999887655543 322 457899999999998875 689999999 44432211 1 1123467
Q ss_pred eeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeC-CCcEEEEeccCceE
Q 019482 200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEI 278 (340)
Q Consensus 200 v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~ 278 (340)
+.+++|+|..... ++.++....+-||.-....++..+.+|.+.|+.+.|.++|+.|++|.. |..|-.||++....
T Consensus 210 isc~a~sP~~~~~----~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~ 285 (406)
T KOG2919|consen 210 ISCFAFSPMDSKT----LAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD 285 (406)
T ss_pred eeeeeccCCCCcc----eeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc
Confidence 8899999987642 688888889999999999999999999999999999999999999975 67899999987544
Q ss_pred eecccccccccceeeEE--EecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccCC
Q 019482 279 NHWSKRLHLGTSIALVE--FCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSVS 340 (340)
Q Consensus 279 ~~~~~~~~~~~~i~~~~--~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~vs 340 (340)
+......|.+..-..|- ..|++++|++|+.||.|++|+++.+.+ .......|+..+|.||
T Consensus 286 pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn--~~sv~~~~sd~vNgvs 347 (406)
T KOG2919|consen 286 PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN--EVSVTGNYSDTVNGVS 347 (406)
T ss_pred hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC--ccccccccccccccee
Confidence 33322345333333444 468899999999999999999998775 3455666777777764
No 149
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.94 E-value=3e-24 Score=169.03 Aligned_cols=308 Identities=12% Similarity=0.083 Sum_probs=212.8
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcc-cCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY-TSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
+.||+++.|.++.. +.+++|+ .|..|++|.+......-. ..-.....|..|...|+++.|+|+|+.||+|+
T Consensus 13 ~~pv~s~dfq~n~~--~~laT~G------~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~ 84 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSL--NKLATAG------GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGG 84 (434)
T ss_pred CCceEEEEeccCcc--cceeccc------CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecC
Confidence 46888999988644 3666665 677799999874332221 12234456889999999999999999999999
Q ss_pred cCCCEEEEEecCceee---------eeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccC
Q 019482 83 TNGGCKLFEVYGGATD---------INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 153 (340)
.+|.+.+|....-... ............|...|..++|+|++.++++++.|..+++||+..|........|
T Consensus 85 D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh 164 (434)
T KOG1009|consen 85 DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH 164 (434)
T ss_pred CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc
Confidence 9999999987621110 0000000111237789999999999999999999999999999999999888888
Q ss_pred ccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee--------c-C---------C----CCceeeEEEccCCCc
Q 019482 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT--------R-N---------S----DEKIELCRFSKDGTK 211 (340)
Q Consensus 154 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--------~-~---------~----~~~v~~~~~~~~~~~ 211 (340)
...+..++|.|-++++++-+.|...+.+.+...+.+.... . + + ..-...++|+|+|..
T Consensus 165 ~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l 244 (434)
T KOG1009|consen 165 EHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL 244 (434)
T ss_pred ccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcE
Confidence 8899999999999999999999877777765433322211 0 0 0 012445789999985
Q ss_pred ceEEEE-EecCC---cceEEEEECCCC-cEEeeeeccCCCeeEEEECC------------------CCCEEEEeeCCCcE
Q 019482 212 PFLFCT-VQRGD---KALLAVYDISTW-NKIGHKRLLRKPASVLSISL------------------DGKYLAMGSKDGDI 268 (340)
Q Consensus 212 ~~~~~~-~~~~~---d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~------------------~~~~l~~~~~dg~i 268 (340)
+..-.- +..+. -+..++|+-... ++...+.....+...+.++| -+-.+++++ .+.|
T Consensus 245 lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~sv 323 (434)
T KOG1009|consen 245 LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSV 323 (434)
T ss_pred EEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceE
Confidence 211100 00011 123345543322 23334444444444444443 223455555 4579
Q ss_pred EEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 269 CVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 269 ~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
++||.++..++......| -..|+.++|++||..++..|.||...+-.++...
T Consensus 324 yvydtq~~~P~~~v~nih-y~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 324 YVYDTQTLEPLAVVDNIH-YSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EEeccccccceEEEeeee-eeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 999999999988887778 5799999999999999999999988887776544
No 150
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.7e-24 Score=165.31 Aligned_cols=243 Identities=15% Similarity=0.173 Sum_probs=184.6
Q ss_pred eeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc
Q 019482 66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR 145 (340)
Q Consensus 66 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 145 (340)
-.|+.|++-|.+||+|+.||.|.|||+.+......+. .|..+|.+++||+||++|++++.|..|.+||+..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~ls-------aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLS-------AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhh-------ccccceeEEEecCCCCEeeeecCCceeEEEeccCCC
Confidence 7899999999999999999999999999877544433 388899999999999999999999999999999999
Q ss_pred eeeccccCccceeEEEecCC-CCeEEEeeCCCeEEEEEccCCeeEEEeecCC----CCceeeEEEccCCCcceEEEEEec
Q 019482 146 IILDEPKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNS----DEKIELCRFSKDGTKPFLFCTVQR 220 (340)
Q Consensus 146 ~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~ 220 (340)
+..++ ....+|..+.|+|. .+..+++-.+..-.+-++..++. ..+.... +....+..|.+.|++ +++|
T Consensus 99 ~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~y-----IitG 171 (405)
T KOG1273|consen 99 PLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKY-----IITG 171 (405)
T ss_pred ceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCE-----EEEe
Confidence 77665 45679999999993 44444444455556666654222 1111111 112334468899998 8999
Q ss_pred CCcceEEEEECCCCcEEeeeeccC-CCeeEEEECCCCCEEEEeeCCCcEEEEeccCc-------eEe--ecccccccccc
Q 019482 221 GDKALLAVYDISTWNKIGHKRLLR-KPASVLSISLDGKYLAMGSKDGDICVVDVKKM-------EIN--HWSKRLHLGTS 290 (340)
Q Consensus 221 ~~d~~i~i~d~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-------~~~--~~~~~~~~~~~ 290 (340)
...|.+.++|..+.+++..++... ..|..+.++..|++|+.-+.|..|+.|+++.- ++. +.+...-....
T Consensus 172 tsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~ 251 (405)
T KOG1273|consen 172 TSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQ 251 (405)
T ss_pred cCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhh
Confidence 999999999999999988888776 78999999999999999999999999998631 111 22111111224
Q ss_pred eeeEEEecCCeEEEEEec-CCcEEEEEecCCCC
Q 019482 291 IALVEFCPTQRVVLTASK-EWGAMITKLTVPAD 322 (340)
Q Consensus 291 i~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~ 322 (340)
-.++.|+.+|.+++.++. -..++||.-...+.
T Consensus 252 Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsL 284 (405)
T KOG1273|consen 252 WKKCCFSGDGEYVCAGSARAHALYIWEKSIGSL 284 (405)
T ss_pred hhheeecCCccEEEeccccceeEEEEecCCcce
Confidence 567889999999887774 46799998776553
No 151
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7e-25 Score=174.36 Aligned_cols=256 Identities=13% Similarity=0.140 Sum_probs=192.0
Q ss_pred EEeeeeec----CCCccEEEEcCCCCcccCCCceEEEEeCCCCCCccc-------------CCeeeEEEecCCCCeeEEE
Q 019482 8 TCGSWIKR----PENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT-------------SPLVTYVFDESEGDPMTIA 70 (340)
Q Consensus 8 ~~~~w~~~----~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~-------------~~~~~~~~~~h~~~v~~~~ 70 (340)
.|++|... .+.++++|.|. .+..|.||+++-....++. .........+|++.|.+++
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGt------mdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls 250 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGT------MDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALS 250 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEec------cCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHH
Confidence 48888764 34478999888 4556999999854432210 0111122457999999999
Q ss_pred EcCCC-CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCCceee
Q 019482 71 VNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIIL 148 (340)
Q Consensus 71 ~~~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~ 148 (340)
|+..- +.||+|+.|.+|.+||+.++++...+.. |...|.++.|+| ...+|++|+.|++|.+.|.+......
T Consensus 251 ~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~-------~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~ 323 (463)
T KOG0270|consen 251 WNRNFRNVLASGSADKTVKLWDVDTGKPKSSITH-------HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG 323 (463)
T ss_pred hccccceeEEecCCCceEEEEEcCCCCcceehhh-------cCCceeEEEecCCCceEEEeccccceEEeeeccCccccC
Confidence 98754 5889999999999999999987665542 778999999999 67799999999999999998543333
Q ss_pred ccccCccceeEEEecCCC-CeEEEeeCCCeEEEEEccCC-eeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceE
Q 019482 149 DEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALL 226 (340)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i 226 (340)
..-...+.|..++|.|.. ..++++..||+|+-+|+|+. +++.++.. |++.|.++++++.-..+ +.+++.|+.+
T Consensus 324 ~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~A-Hd~~ISgl~~n~~~p~~----l~t~s~d~~V 398 (463)
T KOG0270|consen 324 KEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKA-HDDEISGLSVNIQTPGL----LSTASTDKVV 398 (463)
T ss_pred ceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEe-ccCCcceEEecCCCCcc----eeeccccceE
Confidence 333445689999999955 45778889999999999976 77888774 55689999999887763 7889999999
Q ss_pred EEEECCCCcE--EeeeeccCCCeeEEEECCCC-CEEEEeeCCCcEEEEeccCceEeec
Q 019482 227 AVYDISTWNK--IGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHW 281 (340)
Q Consensus 227 ~i~d~~~~~~--~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~ 281 (340)
++|++...++ +......-+...|+++.|+- -.++.|+..+.+++||+.+....+.
T Consensus 399 klw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 399 KLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred EEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHH
Confidence 9999875443 22211112346777888864 4677788888899999988776554
No 152
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.94 E-value=4.1e-24 Score=161.27 Aligned_cols=274 Identities=12% Similarity=0.179 Sum_probs=205.6
Q ss_pred CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCC-eEEEEecC-------CCEEEEEecCceeeeee---
Q 019482 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCSTTN-------GGCKLFEVYGGATDINL--- 101 (340)
Q Consensus 33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d-------~~i~iw~~~~~~~~~~~--- 101 (340)
.+|.|.+..+++....+. ...|..|.+.|..++-+|-.. .|+++-.+ ..+.||.+.........
T Consensus 38 ~dNqVhll~~d~e~s~l~-----skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tl 112 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELL-----SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTL 112 (370)
T ss_pred CcceeEEEEecCccchhh-----hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchh
Confidence 679999999997775543 345667899999999999555 55555432 24679998654322111
Q ss_pred ccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCcee-eccc-----cCccceeEEEecC--CCCeEEEee
Q 019482 102 LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-LDEP-----KAHKSVLDMDFSL--DSEFLATTS 173 (340)
Q Consensus 102 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~~-----~~~~~i~~~~~~~--~~~~l~~~~ 173 (340)
..-......+.+.|.|+.|.|++..+++.. |..|.+|++..+..+ ..+. ++....++-+|+| +++.+++.+
T Consensus 113 E~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~ 191 (370)
T KOG1007|consen 113 ECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS 191 (370)
T ss_pred hHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC
Confidence 110111112457899999999999998876 788999999877652 2221 2234678889999 788888875
Q ss_pred CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc-EEeeeeccCCCeeEEEE
Q 019482 174 TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSI 252 (340)
Q Consensus 174 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~ 252 (340)
|+++..||+++.++...+...|...+..+.|+|+-++. ++++++|+.|++||.+..+ ++..+..|...+.++.|
T Consensus 192 -d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~----lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRf 266 (370)
T KOG1007|consen 192 -DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHI----LVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRF 266 (370)
T ss_pred -CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEE----EEEcCCCccEEEEeccCCCccccccCCCceEEEEEEe
Confidence 89999999999999888888888889999999998764 7999999999999999765 78889999999999999
Q ss_pred CCC-CCEEEEeeCCCcEEEEeccCce------------------------Eeec----ccccccccceeeEEEecCCe-E
Q 019482 253 SLD-GKYLAMGSKDGDICVVDVKKME------------------------INHW----SKRLHLGTSIALVEFCPTQR-V 302 (340)
Q Consensus 253 s~~-~~~l~~~~~dg~i~i~d~~~~~------------------------~~~~----~~~~~~~~~i~~~~~~~~~~-~ 302 (340)
+|. .++|++|+.|..|.+|...+-. ++.- ....| ...|.+++||.-.. .
T Consensus 267 n~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh-EDSVY~~aWSsadPWi 345 (370)
T KOG1007|consen 267 NPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH-EDSVYALAWSSADPWI 345 (370)
T ss_pred cCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc-ccceEEEeeccCCCee
Confidence 994 5788899999999999654311 0000 11234 57899999998665 5
Q ss_pred EEEEecCCcEEEEEec
Q 019482 303 VLTASKEWGAMITKLT 318 (340)
Q Consensus 303 l~~~~~dg~i~iw~~~ 318 (340)
+|+-+.||.+.|-+++
T Consensus 346 FASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 346 FASLSYDGRVIISSVP 361 (370)
T ss_pred EEEeccCceEEeecCC
Confidence 6889999999988774
No 153
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=2.3e-24 Score=168.13 Aligned_cols=230 Identities=15% Similarity=0.230 Sum_probs=171.3
Q ss_pred CCCceEEEEeCCCCCCcc--------cCCeeeEEEecCCCCeeEEEEcCCC-CeEEEEecCCCEEEEEecCceeeeeecc
Q 019482 33 SPSVLEIFSFDPKTTSVY--------TSPLVTYVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLA 103 (340)
Q Consensus 33 ~~~~i~i~~~~~~~~~~~--------~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 103 (340)
..+.+++|++.+.-..+. ......+++.+|...=++++|||-. -.|++|..-+.|++|...++......
T Consensus 173 e~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~-- 250 (440)
T KOG0302|consen 173 ENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQ-- 250 (440)
T ss_pred ccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecC--
Confidence 345588888764332221 2344667899999999999999933 25888888889999999886543222
Q ss_pred ccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeCCCCc--eeeccccCccceeEEEecCCCCeEEEeeCCCeEEE
Q 019482 104 KKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLR--IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI 180 (340)
Q Consensus 104 ~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i 180 (340)
.+...|...|..++|||. ...|++|+.||+|+|||++.+. .......|...|+.+.|+.+-.+||+|+.||+++|
T Consensus 251 --~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~i 328 (440)
T KOG0302|consen 251 --RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSI 328 (440)
T ss_pred --ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEE
Confidence 333458999999999994 5589999999999999999873 22234667779999999998889999999999999
Q ss_pred EEccC---CeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE----------------Eeeee
Q 019482 181 WKTED---GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK----------------IGHKR 241 (340)
Q Consensus 181 wd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~----------------~~~~~ 241 (340)
||+++ ++++..++. |..+|+++.|+|..... +++++.|.+|.+||+..-.. .+.+.
T Consensus 329 wDLR~~~~~~pVA~fk~-Hk~pItsieW~p~e~s~----iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLF 403 (440)
T KOG0302|consen 329 WDLRQFKSGQPVATFKY-HKAPITSIEWHPHEDSV----IAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLF 403 (440)
T ss_pred EEhhhccCCCcceeEEe-ccCCeeEEEeccccCce----EEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEE
Confidence 99985 567777774 56799999999987653 78889999999999863211 11122
Q ss_pred cc--CCCeeEEEECCC-CCEEEEeeCCCcEEEEe
Q 019482 242 LL--RKPASVLSISLD-GKYLAMGSKDGDICVVD 272 (340)
Q Consensus 242 ~~--~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d 272 (340)
.| ...+..+.|+++ ..++++.+.|| +.||.
T Consensus 404 VHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 404 VHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred EecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 23 345777889885 45777777887 55553
No 154
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.93 E-value=1.8e-23 Score=160.22 Aligned_cols=290 Identities=17% Similarity=0.171 Sum_probs=204.9
Q ss_pred EEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcc----cCCeeeEEEec-CCCCeeEEEEc-------CCC
Q 019482 8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY----TSPLVTYVFDE-SEGDPMTIAVN-------PSG 75 (340)
Q Consensus 8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~----~~~~~~~~~~~-h~~~v~~~~~~-------~~~ 75 (340)
..+.|+|+.. .+|+ ...++.+.+|++..+.-.-. .......+++. ....|+..+|- |+.
T Consensus 53 kgckWSPDGS--ciL~-------~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t 123 (406)
T KOG2919|consen 53 KGCKWSPDGS--CILS-------LSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST 123 (406)
T ss_pred ccceeCCCCc--eEEe-------ecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcc
Confidence 4678999654 4565 56889999999875332211 01111112222 23457788875 677
Q ss_pred CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC-CCCcee--ecc--
Q 019482 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW-PSLRII--LDE-- 150 (340)
Q Consensus 76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~-~~~~~~--~~~-- 150 (340)
.++|+.+++.-|++||..+++....+..-. ....-....+++|+|||.+|++|. ...|+++|+ +.|... ...
T Consensus 124 ~l~a~ssr~~PIh~wdaftG~lraSy~~yd--h~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 124 NLFAVSSRDQPIHLWDAFTGKLRASYRAYD--HQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred ceeeeccccCceeeeeccccccccchhhhh--hHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhh
Confidence 899999999999999999988655543211 111223557899999999999875 578999998 444321 111
Q ss_pred ---ccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecC-Ccce
Q 019482 151 ---PKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG-DKAL 225 (340)
Q Consensus 151 ---~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~d~~ 225 (340)
.+..+-|.+++|+| +.+.++.++...++-||.-..+.++..+- .+.+.|+.++|.++|+. ++++. .+..
T Consensus 201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-gh~gGvThL~~~edGn~-----lfsGaRk~dk 274 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-GHGGGVTHLQWCEDGNK-----LFSGARKDDK 274 (406)
T ss_pred cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec-ccCCCeeeEEeccCcCe-----ecccccCCCe
Confidence 12234688999999 66799999999999999988888877775 56678999999999997 45544 5788
Q ss_pred EEEEECCCCc-EEeeeeccCC---CeeEEEECCCCCEEEEeeCCCcEEEEeccC-ceEeecccccccccceeeEEEecCC
Q 019482 226 LAVYDISTWN-KIGHKRLLRK---PASVLSISLDGKYLAMGSKDGDICVVDVKK-MEINHWSKRLHLGTSIALVEFCPTQ 300 (340)
Q Consensus 226 i~i~d~~~~~-~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~ 300 (340)
|..||+|.-. ++..+..|.. .---....|++++|++|+.||.|++||+++ +.....+ ..+ ...++.++++|--
T Consensus 275 Il~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~-~~~-sd~vNgvslnP~m 352 (406)
T KOG2919|consen 275 ILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT-GNY-SDTVNGVSLNPIM 352 (406)
T ss_pred EEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc-ccc-cccccceecCccc
Confidence 9999999644 4444544433 122345578999999999999999999998 5544443 334 5789999999998
Q ss_pred eEEEEEecCCcEEEEEecCC
Q 019482 301 RVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 301 ~~l~~~~~dg~i~iw~~~~~ 320 (340)
.++++++.. +++..+..
T Consensus 353 pilatssGq---r~f~~~~d 369 (406)
T KOG2919|consen 353 PILATSSGQ---RIFKYPKD 369 (406)
T ss_pred ceeeeccCc---eeecCCCc
Confidence 888888766 55555443
No 155
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=1.6e-24 Score=182.13 Aligned_cols=244 Identities=13% Similarity=0.134 Sum_probs=200.1
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC---CCCeEE
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP---SGDDFV 79 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~ 79 (340)
+..-+.|++-+| +++.||+|.+.+. +++|++. +......++.|+.+|.|+.|+. ..++||
T Consensus 458 ~r~G~R~~~vSp---~gqhLAsGDr~Gn------lrVy~Lq--------~l~~~~~~eAHesEilcLeyS~p~~~~kLLA 520 (1080)
T KOG1408|consen 458 SRFGFRALAVSP---DGQHLASGDRGGN------LRVYDLQ--------ELEYTCFMEAHESEILCLEYSFPVLTNKLLA 520 (1080)
T ss_pred cccceEEEEECC---CcceecccCccCc------eEEEEeh--------hhhhhhheecccceeEEEeecCchhhhHhhh
Confidence 456688999999 6788999997776 9999997 4444456788999999999985 346899
Q ss_pred EEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCC--CeEEEccCCCcEEEEeCCC-CceeeccccCc--
Q 019482 80 CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG--SRFAAGGVDGHLRIMHWPS-LRIILDEPKAH-- 154 (340)
Q Consensus 80 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~-- 154 (340)
++++|..|.|||+...-....... .|...|+++.|..+| ..+++++.|..|.+ +... ......+..++
T Consensus 521 SasrdRlIHV~Dv~rny~l~qtld------~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t 593 (1080)
T KOG1408|consen 521 SASRDRLIHVYDVKRNYDLVQTLD------GHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQT 593 (1080)
T ss_pred hccCCceEEEEecccccchhhhhc------ccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccc
Confidence 999999999999976543322222 378999999999877 67889998987654 4332 11112222222
Q ss_pred ---cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCC--CCceeeEEEccCCCcceEEEEEecCCcceEEEE
Q 019482 155 ---KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS--DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY 229 (340)
Q Consensus 155 ---~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~ 229 (340)
..+.+|+..|..+++++++.|..|+|||+++++..+.+++.+ ++..-.+...|.|.+ +++...|.++.++
T Consensus 594 ~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY-----~atScsdktl~~~ 668 (1080)
T KOG1408|consen 594 LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIY-----LATSCSDKTLCFV 668 (1080)
T ss_pred cccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccE-----EEEeecCCceEEE
Confidence 368999999999999999999999999999999999998544 356777888999988 8999999999999
Q ss_pred ECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC
Q 019482 230 DISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (340)
Q Consensus 230 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 275 (340)
|..+++++..+.+|...|+.+.|.+|-+.|++.+.||.|.+|.+..
T Consensus 669 Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 669 DFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 9999999999999999999999999999999999999999998864
No 156
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=3.2e-24 Score=176.74 Aligned_cols=249 Identities=18% Similarity=0.186 Sum_probs=195.3
Q ss_pred eeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCC--eEEEcc
Q 019482 54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS--RFAAGG 131 (340)
Q Consensus 54 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~ 131 (340)
.+...+.||++.|.++...|.|.+|++|+.||+|+||.+.++.++.... ..+.|.|++|+|.+. .||++-
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~--------~d~~I~~vaw~P~~~~~vLAvA~ 462 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--------FDSEIRSVAWNPLSDLCVLAVAV 462 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe--------ecceeEEEEecCCCCceeEEEEe
Confidence 3567789999999999999999999999999999999999999987764 346899999999765 344433
Q ss_pred CCCcEEEEeCCCC---------------------------------c----eeeccccCccceeEEEecCCCCeEEEeeC
Q 019482 132 VDGHLRIMHWPSL---------------------------------R----IILDEPKAHKSVLDMDFSLDSEFLATTST 174 (340)
Q Consensus 132 ~dg~i~~~d~~~~---------------------------------~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 174 (340)
. ..+.+.+..-| + -+.....|...|..+.|+..|.||++...
T Consensus 463 ~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~ 541 (733)
T KOG0650|consen 463 G-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP 541 (733)
T ss_pred c-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc
Confidence 2 22444332111 0 01123345668999999999999998765
Q ss_pred C---CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEE
Q 019482 175 D---GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLS 251 (340)
Q Consensus 175 d---~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 251 (340)
+ ..|.|+++........+. ...+.+.++.|+|...++ +. .....|++||+.....++.+......|..++
T Consensus 542 ~~~~~~VliHQLSK~~sQ~PF~-kskG~vq~v~FHPs~p~l-----fV-aTq~~vRiYdL~kqelvKkL~tg~kwiS~ms 614 (733)
T KOG0650|consen 542 DSGNKSVLIHQLSKRKSQSPFR-KSKGLVQRVKFHPSKPYL-----FV-ATQRSVRIYDLSKQELVKKLLTGSKWISSMS 614 (733)
T ss_pred CCCcceEEEEecccccccCchh-hcCCceeEEEecCCCceE-----EE-EeccceEEEehhHHHHHHHHhcCCeeeeeee
Confidence 4 579999998766655554 344679999999998863 22 2366799999999887777777778899999
Q ss_pred ECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482 252 ISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 252 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
.+|.|.-|+.|+.|+.+..||+.-..........| ...+++++|++.-.++++|+.||.+.|+.-..
T Consensus 615 ihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H-~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~V 681 (733)
T KOG0650|consen 615 IHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLH-EKAVRSVAFHKRYPLFASGSDDGTVIVFHGMV 681 (733)
T ss_pred ecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhh-hhhhhhhhhccccceeeeecCCCcEEEEeeee
Confidence 99999999999999999999998765544444455 67999999999999999999999999986544
No 157
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=2.2e-23 Score=174.42 Aligned_cols=289 Identities=17% Similarity=0.219 Sum_probs=214.7
Q ss_pred eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCC
Q 019482 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (340)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~ 86 (340)
-+.+-|+|+. ++++.-+ ..+..++|.-. +.. .-.......||.+.|..++|+|.|++|++.+.|.+
T Consensus 319 F~g~lw~~n~---~~ii~~g------~~Gg~hlWkt~-d~~----~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQT 384 (764)
T KOG1063|consen 319 FWGGLWSPNS---NVIIAHG------RTGGFHLWKTK-DKT----FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQT 384 (764)
T ss_pred eeeEEEcCCC---CEEEEec------ccCcEEEEecc-Ccc----ceeeccccccccccceeeeecCCCCEEEEeccccc
Confidence 4566777743 3343333 34448888821 211 22344557899999999999999999999999999
Q ss_pred EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC-----------------------
Q 019482 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS----------------------- 143 (340)
Q Consensus 87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------------------- 143 (340)
-|++-....+...... ..+.-|.-...|++|-+....+++|.....+|+|+...
T Consensus 385 TRlFa~wg~q~~wHEi---aRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~g 461 (764)
T KOG1063|consen 385 TRLFARWGRQQEWHEI---ARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDG 461 (764)
T ss_pred eeeecccccccceeee---cccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccc
Confidence 9998776333222222 22233777889999998767889999889999997621
Q ss_pred --------------------Cce---------------------------------eeccccCccceeEEEecCCCCeEE
Q 019482 144 --------------------LRI---------------------------------ILDEPKAHKSVLDMDFSLDSEFLA 170 (340)
Q Consensus 144 --------------------~~~---------------------------------~~~~~~~~~~i~~~~~~~~~~~l~ 170 (340)
|.. +.++.+|.-.|++++.+|+++++|
T Consensus 462 A~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliA 541 (764)
T KOG1063|consen 462 ANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIA 541 (764)
T ss_pred cccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEe
Confidence 000 012445666899999999999999
Q ss_pred EeeCCC-----eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE----Eeeee
Q 019482 171 TTSTDG-----SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK----IGHKR 241 (340)
Q Consensus 171 ~~~~d~-----~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~----~~~~~ 241 (340)
+++... .|++|+..+-..++.+.. |.-.|+.++||||+++ +++.+.|.++.+|....... ....+
T Consensus 542 SaCKS~~~ehAvI~lw~t~~W~~~~~L~~-HsLTVT~l~FSpdg~~-----LLsvsRDRt~sl~~~~~~~~~e~~fa~~k 615 (764)
T KOG1063|consen 542 SACKSSLKEHAVIRLWNTANWLQVQELEG-HSLTVTRLAFSPDGRY-----LLSVSRDRTVSLYEVQEDIKDEFRFACLK 615 (764)
T ss_pred ehhhhCCccceEEEEEeccchhhhheecc-cceEEEEEEECCCCcE-----EEEeecCceEEeeeeecccchhhhhcccc
Confidence 998543 599999988888777765 4567999999999998 89999999999999854331 22356
Q ss_pred ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCc--eEeecccccccccceeeEEEecC-----CeEEEEEecCCcEEE
Q 019482 242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM--EINHWSKRLHLGTSIALVEFCPT-----QRVVLTASKEWGAMI 314 (340)
Q Consensus 242 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~i 314 (340)
.|..-|.+..|+|+++++++++.|.+|++|..... +.+..+.....+..|+.++|.|- +..++.|-..|.|.+
T Consensus 616 ~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l 695 (764)
T KOG1063|consen 616 AHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVL 695 (764)
T ss_pred ccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEE
Confidence 78888999999999999999999999999998876 44333222223678999999872 237788888999999
Q ss_pred EEec
Q 019482 315 TKLT 318 (340)
Q Consensus 315 w~~~ 318 (340)
|+.+
T Consensus 696 ~~~~ 699 (764)
T KOG1063|consen 696 WRRK 699 (764)
T ss_pred Eecc
Confidence 9976
No 158
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=7.5e-24 Score=169.18 Aligned_cols=256 Identities=14% Similarity=0.054 Sum_probs=191.0
Q ss_pred EEEecCCCCeeEEEEcCCC--CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCC
Q 019482 57 YVFDESEGDPMTIAVNPSG--DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVD 133 (340)
Q Consensus 57 ~~~~~h~~~v~~~~~~~~~--~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d 133 (340)
...+.+.++|.+++|+|.. +.+|+|..-|+|-+||+.+.+....- ......|.++|.++.|+| +-..+++.+.|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~---v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDG---VYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCc---eEEeccCCccccceEecCCChhheeeeccC
Confidence 4566789999999999965 47888888999999999633221110 111224889999999999 55689999999
Q ss_pred CcEEEEeCCCCceeecccc--CccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCc
Q 019482 134 GHLRIMHWPSLRIILDEPK--AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (340)
Q Consensus 134 g~i~~~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (340)
|+|++-|++....-..+.. ....+..+.|+.+...++.+..=|...+||++++........-|...|.+++++|...+
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPW 336 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCch
Confidence 9999999987643322222 33467889999888878888777799999999876643333344558999999999887
Q ss_pred ceEEEEEecCCcceEEEEECCCCcE----EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEecc----CceEeeccc
Q 019482 212 PFLFCTVQRGDKALLAVYDISTWNK----IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK----KMEINHWSK 283 (340)
Q Consensus 212 ~~~~~~~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~ 283 (340)
. +++++.|++.+|||++.... +.....|...|.++.|||.+..|++.+.|..|+|||.. ...+...+.
T Consensus 337 ~----laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~ 412 (498)
T KOG4328|consen 337 F----LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP 412 (498)
T ss_pred h----eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee
Confidence 5 79999999999999986543 33445678899999999988779999999999999984 233333332
Q ss_pred ccccc---cceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482 284 RLHLG---TSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 284 ~~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
..+.. -......|.|+..++++|-.-..|-|++-..
T Consensus 413 Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~ 451 (498)
T KOG4328|consen 413 HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNG 451 (498)
T ss_pred ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCC
Confidence 22211 1345678999999999998888888877543
No 159
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=7.9e-23 Score=155.64 Aligned_cols=254 Identities=11% Similarity=0.145 Sum_probs=183.0
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC--CCCeEEEEe
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCST 82 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~ 82 (340)
.-|.|+.|.+. ++-+|+++ +|.+++||+++.... +..+....+.|.+.|..+.|.+ -|+.+|+++
T Consensus 14 DlihdVs~D~~---GRRmAtCS------sDq~vkI~d~~~~s~----~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS 80 (361)
T KOG2445|consen 14 DLIHDVSFDFY---GRRMATCS------SDQTVKIWDSTSDSG----TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS 80 (361)
T ss_pred ceeeeeeeccc---Cceeeecc------CCCcEEEEeccCCCC----ceEEeeeEEecCCcEEEEEecCccccceEEEEe
Confidence 45899999983 34455554 777899999865443 4456667889999999999965 589999999
Q ss_pred cCCCEEEEEecCceeee--eeccccCCCCCCCCCeEEEEEec--CCCeEEEccCCCcEEEEeCCCC------ceeeccc-
Q 019482 83 TNGGCKLFEVYGGATDI--NLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSL------RIILDEP- 151 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~------~~~~~~~- 151 (340)
.|+++.||.-....... ..-............|+++.|.| -|-.|++++.||.+|||+...- .....+.
T Consensus 81 ~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~ 160 (361)
T KOG2445|consen 81 YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN 160 (361)
T ss_pred cCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence 99999999863221110 00000111123457899999999 4668999999999999986532 1111221
Q ss_pred ------cCccceeEEEecCC---CCeEEEeeCC-----CeEEEEEccCCe----eEEEeecCCCCceeeEEEccCCCcce
Q 019482 152 ------KAHKSVLDMDFSLD---SEFLATTSTD-----GSARIWKTEDGV----AWTFLTRNSDEKIELCRFSKDGTKPF 213 (340)
Q Consensus 152 ------~~~~~i~~~~~~~~---~~~l~~~~~d-----~~v~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (340)
.++.+..|+.|+|. ..+|+.|+.+ +.++||....+. .+.++. .+..+|++++|.|+-...|
T Consensus 161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y 239 (361)
T KOG2445|consen 161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSY 239 (361)
T ss_pred ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCce
Confidence 23447889999973 4578888755 479999876543 234444 4567999999999854433
Q ss_pred EEEEEecCCcceEEEEECCCC--------------------cEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEec
Q 019482 214 LFCTVQRGDKALLAVYDISTW--------------------NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDV 273 (340)
Q Consensus 214 ~~~~~~~~~d~~i~i~d~~~~--------------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 273 (340)
- .+++++.|| |+||.++.. +.+..+..|++.+..+.|+-.|..|++.+.||.|++|..
T Consensus 240 ~-~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 240 H-LLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred e-eEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 2 368888899 999998731 234556788899999999999999999999999999976
Q ss_pred c
Q 019482 274 K 274 (340)
Q Consensus 274 ~ 274 (340)
.
T Consensus 318 n 318 (361)
T KOG2445|consen 318 N 318 (361)
T ss_pred h
Confidence 4
No 160
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.92 E-value=2.9e-23 Score=163.04 Aligned_cols=237 Identities=12% Similarity=0.116 Sum_probs=179.8
Q ss_pred EecCCCCeeEEEEcC-CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcE
Q 019482 59 FDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHL 136 (340)
Q Consensus 59 ~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i 136 (340)
+.||+++|..++|+| +...||+|+.|.+|.||.+-.+.....+.........|...|--++|+|. .+.|++++.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 679999999999999 55688999999999999997765544443222223458889999999994 5688999999999
Q ss_pred EEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEE
Q 019482 137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC 216 (340)
Q Consensus 137 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 216 (340)
.+||+.+++....+. |.+.|.++.|+.||.+|++++.|..|+|||.++++.+..-..+.......+.|-.++. ++..
T Consensus 157 ~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~--i~tT 233 (472)
T KOG0303|consen 157 SIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK--IFTT 233 (472)
T ss_pred EEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc--eeee
Confidence 999999999887775 8899999999999999999999999999999999999888666666677788888888 2333
Q ss_pred EEecCCcceEEEEECCCCcEE---eeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceEe-ecccccccccce
Q 019482 217 TVQRGDKALLAVYDISTWNKI---GHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEIN-HWSKRLHLGTSI 291 (340)
Q Consensus 217 ~~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~-~~~~~~~~~~~i 291 (340)
.++...+.++-+||..+.+.. ..+.. ...|.---|.||.+.++.++ .|+.|+.|.+....+. +.+.......+-
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQ 312 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQ 312 (472)
T ss_pred ccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcc
Confidence 444557889999998775532 22222 23455566788888776654 6899999999776532 222111113455
Q ss_pred eeEEEecC
Q 019482 292 ALVEFCPT 299 (340)
Q Consensus 292 ~~~~~~~~ 299 (340)
..+.|-|.
T Consensus 313 RG~g~mPK 320 (472)
T KOG0303|consen 313 RGMGFMPK 320 (472)
T ss_pred cccccccc
Confidence 66666664
No 161
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.92 E-value=2.1e-23 Score=174.36 Aligned_cols=279 Identities=13% Similarity=0.145 Sum_probs=203.8
Q ss_pred eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCC
Q 019482 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG 85 (340)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~ 85 (340)
-|+.++|-|+..+ .++|. ++.+.+|+.+ +.....++++|.+.|++++|+.||+.+|+|+.|.
T Consensus 14 ci~d~afkPDGsq-L~lAA---------g~rlliyD~n--------dG~llqtLKgHKDtVycVAys~dGkrFASG~aDK 75 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQ-LILAA---------GSRLLVYDTS--------DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADK 75 (1081)
T ss_pred chheeEECCCCce-EEEec---------CCEEEEEeCC--------CcccccccccccceEEEEEEccCCceeccCCCce
Confidence 5788999997653 33342 2346777665 4445567999999999999999999999999999
Q ss_pred CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCC
Q 019482 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD 165 (340)
Q Consensus 86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~ 165 (340)
.|.+|+..-... .+ ..|...|.|+.|+|-.+.|++++-. ..-+|..+..... +. .....+.+.+|..|
T Consensus 76 ~VI~W~~klEG~-Lk--------YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~-K~-kss~R~~~CsWtnD 143 (1081)
T KOG1538|consen 76 SVIIWTSKLEGI-LK--------YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS-KH-KSSSRIICCSWTND 143 (1081)
T ss_pred eEEEecccccce-ee--------eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH-hh-hhheeEEEeeecCC
Confidence 999998654322 11 2488999999999998899988753 4678886543322 22 22347889999999
Q ss_pred CCeEEEeeCCCeEEEEEccCCeeEEEee--cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeecc
Q 019482 166 SEFLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL 243 (340)
Q Consensus 166 ~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 243 (340)
|++++.|-.+|+|.+-+- ++++...+. ++.+.+|.+++|+|....-..-.++......++.+|.+. |+.+..-+..
T Consensus 144 GqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L 221 (1081)
T KOG1538|consen 144 GQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRAL 221 (1081)
T ss_pred CcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccC
Confidence 999999999999999864 444433333 456678999999997542111113444555666666554 3444433444
Q ss_pred CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482 244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 244 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
+-...|+.+.|+|.+++.|+.|+.+++|.-+ |-.+.++.. ....|+.++..|++++++.|..||++--|++-.
T Consensus 222 ~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTvg~--~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 222 NFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTVGE--QDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred CCCchhheeccCCcEEEEccCCCceEEEeec-CeEEeeccc--cceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 4566789999999999999999999999754 434433322 256899999999999999999999999998753
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.8e-24 Score=188.50 Aligned_cols=256 Identities=13% Similarity=0.162 Sum_probs=197.6
Q ss_pred CceeEEeeeeecCCC-ccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCC-eEEEE
Q 019482 4 GGTVTCGSWIKRPEN-VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCS 81 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~-~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~ 81 (340)
..+-+.++|.+.... ..++|.|. .||.|.+|+.+...... ..........|++.|..+.|++.+. .||+|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~------edG~I~ly~p~~~~~~~--~~~~la~~~~h~G~V~gLDfN~~q~nlLASG 135 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGL------EDGNIVLYDPASIIANA--SEEVLATKSKHTGPVLGLDFNPFQGNLLASG 135 (1049)
T ss_pred cccceeeeecccCCCccceeeccc------cCCceEEecchhhccCc--chHHHhhhcccCCceeeeeccccCCceeecc
Confidence 456788999985433 23455333 67789999887531111 2233455778999999999999655 99999
Q ss_pred ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeCCCCceeeccccCcc--cee
Q 019482 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK--SVL 158 (340)
Q Consensus 82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~i~ 158 (340)
+.||.|.|||+...+...... .....+.|.+++|+.. .+.|++++.+|.+.|||++..+.+..+..+.. .+.
T Consensus 136 a~~geI~iWDlnn~~tP~~~~-----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S 210 (1049)
T KOG0307|consen 136 ADDGEILIWDLNKPETPFTPG-----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCS 210 (1049)
T ss_pred CCCCcEEEeccCCcCCCCCCC-----CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcccee
Confidence 999999999998755433332 1224578999999984 45788999999999999998887777765544 578
Q ss_pred EEEecCCC-CeEEEeeCCC---eEEEEEccCCe-eEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC
Q 019482 159 DMDFSLDS-EFLATTSTDG---SARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (340)
Q Consensus 159 ~~~~~~~~-~~l~~~~~d~---~v~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 233 (340)
.++|+|+. ..+++++.|. .|.+||+|.-. +++.+. +|...|.++.|++.+..+ +++++.|+.|.+|+.++
T Consensus 211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~-~H~~GilslsWc~~D~~l----llSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 211 VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILE-GHQRGILSLSWCPQDPRL----LLSSGKDNRIICWNPNT 285 (1049)
T ss_pred eeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhc-ccccceeeeccCCCCchh----hhcccCCCCeeEecCCC
Confidence 99999965 4577776553 69999998644 445554 555679999999988553 78999999999999999
Q ss_pred CcEEeeeeccCCCeeEEEECCCC-CEEEEeeCCCcEEEEeccCce
Q 019482 234 WNKIGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKME 277 (340)
Q Consensus 234 ~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~ 277 (340)
++.+..+......+..+.|+|.. ..+++++-||.|.||.+.+..
T Consensus 286 gEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 286 GEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999999888899999999965 588889999999999987654
No 163
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=4.3e-23 Score=170.17 Aligned_cols=287 Identities=14% Similarity=0.098 Sum_probs=213.5
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCC--eEEE
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD--DFVC 80 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~ 80 (340)
+++.|.|++-.| .+..+++|+. ++++++|.+. +..+..... -.+.|.|++|+|.++ .||+
T Consensus 399 Htg~Vr~iSvdp---~G~wlasGsd------DGtvriWEi~--------TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAv 460 (733)
T KOG0650|consen 399 HTGLVRSISVDP---SGEWLASGSD------DGTVRIWEIA--------TGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAV 460 (733)
T ss_pred cCCeEEEEEecC---CcceeeecCC------CCcEEEEEee--------cceEEEEEe-ecceeEEEEecCCCCceeEEE
Confidence 367889999888 5678998885 5559999997 555444333 245799999999776 4444
Q ss_pred EecCCCEEEEEecCceeeee-----e-----------------ccc--------cCCCCCCCCCeEEEEEecCCCeEEEc
Q 019482 81 STTNGGCKLFEVYGGATDIN-----L-----------------LAK--------KMPPLQDAGPQKCLSFSVDGSRFAAG 130 (340)
Q Consensus 81 ~~~d~~i~iw~~~~~~~~~~-----~-----------------~~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~ 130 (340)
+-... +.|.+..-+..+.. . ... -...+.|...|..+.|+..|.||++.
T Consensus 461 A~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV 539 (733)
T KOG0650|consen 461 AVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATV 539 (733)
T ss_pred EecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEe
Confidence 44333 55655433311000 0 000 00123467789999999999999988
Q ss_pred cCC---CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEcc
Q 019482 131 GVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK 207 (340)
Q Consensus 131 ~~d---g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (340)
..+ ..|.|.++.......-+...++.+.++.|+|...+|++++. ..|+|||+..+..++.+.... ..|..++.+|
T Consensus 540 ~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~-kwiS~msihp 617 (733)
T KOG0650|consen 540 MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGS-KWISSMSIHP 617 (733)
T ss_pred ccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCC-eeeeeeeecC
Confidence 654 46889999877666556666778999999999988888875 689999999887777776544 4799999999
Q ss_pred CCCcceEEEEEecCCcceEEEEECCCC-cEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEec------cCce---
Q 019482 208 DGTKPFLFCTVQRGDKALLAVYDISTW-NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDV------KKME--- 277 (340)
Q Consensus 208 ~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~------~~~~--- 277 (340)
.|.. ++.++.|+.+..||+.-. ++.+.+..|...+++++|++.-.++++|+.||.+.||-- -...
T Consensus 618 ~GDn-----li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliV 692 (733)
T KOG0650|consen 618 NGDN-----LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIV 692 (733)
T ss_pred CCCe-----EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceE
Confidence 9998 889999999999999854 566778889999999999999999999999999999842 2211
Q ss_pred Eeeccccccc---ccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482 278 INHWSKRLHL---GTSIALVEFCPTQRVVLTASKEWGAMITK 316 (340)
Q Consensus 278 ~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~iw~ 316 (340)
++..+ .+|. ...|..+.|+|...+|++++.||+|++|.
T Consensus 693 PlK~L-~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 693 PLKRL-RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred eeeec-cCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 12222 3442 12488889999999999999999999983
No 164
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=3.6e-23 Score=171.72 Aligned_cols=264 Identities=17% Similarity=0.198 Sum_probs=185.0
Q ss_pred eEEEEcC---CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC
Q 019482 67 MTIAVNP---SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS 143 (340)
Q Consensus 67 ~~~~~~~---~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 143 (340)
.+..|++ ....|+.+.+||.|.++|........ ....-.....|.+.|..+.|-|....|++++.|.++++||+++
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~-ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRL-EERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcch-hhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecc
Confidence 3466665 34588999999999999987654330 0111123456999999999999667899999999999999999
Q ss_pred Cceeec--cccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCe--------------------eEEEee------c
Q 019482 144 LRIILD--EPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGV--------------------AWTFLT------R 194 (340)
Q Consensus 144 ~~~~~~--~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~--------------------~~~~~~------~ 194 (340)
.+.... +.+|...+.+++|.| |...|++|+.||.+.|||++-.. +...+. .
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 887766 788999999999999 55679999999999999987432 000000 0
Q ss_pred CCCCc----eeeEEEccCCCcceEEEEEecCC-cceEEEEECCCCcEEeee--------ecc---CCCeeEEEECCCCCE
Q 019482 195 NSDEK----IELCRFSKDGTKPFLFCTVQRGD-KALLAVYDISTWNKIGHK--------RLL---RKPASVLSISLDGKY 258 (340)
Q Consensus 195 ~~~~~----v~~~~~~~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~--------~~~---~~~i~~~~~s~~~~~ 258 (340)
.+... |+.+.|- |... +++++. |+.|++||+++....... ..+ ...+.++.....|.+
T Consensus 212 A~s~ti~ssvTvv~fk-De~t-----laSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~ 285 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFK-DEST-----LASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY 285 (720)
T ss_pred cccCceeeeeEEEEEe-ccce-----eeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe
Confidence 11122 3444444 4443 566665 999999999976543221 112 235677888888899
Q ss_pred EEEeeCCCcEEEEeccCceEeecc-cccccccc-eeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCcccccccccc
Q 019482 259 LAMGSKDGDICVVDVKKMEINHWS-KRLHLGTS-IALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQ 336 (340)
Q Consensus 259 l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~-i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v 336 (340)
|++.+.|+.|++||+.+...-... ..++.... -..-..+||+.++++|+.|...++|.+..+.. +.....+|...|
T Consensus 286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~--~~~~l~Ght~eV 363 (720)
T KOG0321|consen 286 LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA--PPALLLGHTREV 363 (720)
T ss_pred EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC--ChhhhhCcceEE
Confidence 999999999999999874432111 11111111 11224689999999999999999999987764 556677787777
Q ss_pred ccC
Q 019482 337 NSV 339 (340)
Q Consensus 337 ~~v 339 (340)
..|
T Consensus 364 t~V 366 (720)
T KOG0321|consen 364 TTV 366 (720)
T ss_pred EEE
Confidence 655
No 165
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.91 E-value=9.8e-21 Score=158.16 Aligned_cols=275 Identities=9% Similarity=0.087 Sum_probs=176.6
Q ss_pred cCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe-cCCCEEEEEecCceeeeeeccccCCCCC
Q 019482 32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQ 110 (340)
Q Consensus 32 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 110 (340)
..++.|.+|+++..+ .+ .....+. +.+.+..++++|++++|++++ .++.|.+|+++.......... ..
T Consensus 9 ~~~~~I~~~~~~~~g-~l----~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~-----~~ 77 (330)
T PRK11028 9 PESQQIHVWNLNHEG-AL----TLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE-----SP 77 (330)
T ss_pred CCCCCEEEEEECCCC-ce----eeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeee-----ec
Confidence 356779999996322 11 1222232 345678899999999887664 467899999973211111111 01
Q ss_pred CCCCeEEEEEecCCCeEEEccC-CCcEEEEeCCCCcee---eccccCccceeEEEecCCCCeEEEee-CCCeEEEEEccC
Q 019482 111 DAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRII---LDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTED 185 (340)
Q Consensus 111 ~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~ 185 (340)
..+....++|+|++++|++++. ++.|.+|++++.... .....+......++++|+++++++++ .++.|.+||+++
T Consensus 78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 2235678999999998887764 789999999643211 11112223467788999999886555 569999999976
Q ss_pred CeeEEE-----eecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC--Cc--EEeeeeccC------CCeeEE
Q 019482 186 GVAWTF-----LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST--WN--KIGHKRLLR------KPASVL 250 (340)
Q Consensus 186 ~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--~~--~~~~~~~~~------~~i~~~ 250 (340)
...+.. ...........+.|+|+++++ .++...++.|.+||++. ++ .+..+.... .....+
T Consensus 158 ~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~l----yv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i 233 (330)
T PRK11028 158 DGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYA----YCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADI 233 (330)
T ss_pred CCcccccCCCceecCCCCCCceEEECCCCCEE----EEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeE
Confidence 332211 111122346789999999973 23344589999999973 22 222222211 122358
Q ss_pred EECCCCCEEEEeeC-CCcEEEEeccCce-EeecccccccccceeeEEEecCCeEEEEEec-CCcEEEEEecCCC
Q 019482 251 SISLDGKYLAMGSK-DGDICVVDVKKME-INHWSKRLHLGTSIALVEFCPTQRVVLTASK-EWGAMITKLTVPA 321 (340)
Q Consensus 251 ~~s~~~~~l~~~~~-dg~i~i~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~ 321 (340)
.++|++++++++.. ++.|.+|++.... ..........+.....++|+|||++|+++.. ++.|.+|+++.+.
T Consensus 234 ~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~ 307 (330)
T PRK11028 234 HITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGET 307 (330)
T ss_pred EECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCC
Confidence 89999999999865 6899999986432 2211111111235678999999999887775 8999999997543
No 166
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=8.4e-24 Score=173.11 Aligned_cols=262 Identities=15% Similarity=0.179 Sum_probs=192.1
Q ss_pred CeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeecccc-CCCCCCCCCeEEEEEecCCCeEEEcc
Q 019482 53 PLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKK-MPPLQDAGPQKCLSFSVDGSRFAAGG 131 (340)
Q Consensus 53 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~ 131 (340)
....+++..|.+.|+.++|+|....|++++.|+.+.+|++...........+. ...-.|.++|.|+++.++++.+++|+
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence 44556888899999999999999999999999999999994321111000000 11124899999999999999999999
Q ss_pred CCCcEEEEeCCCCc----------eeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeec-CCCCce
Q 019482 132 VDGHLRIMHWPSLR----------IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKI 200 (340)
Q Consensus 132 ~dg~i~~~d~~~~~----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~~v 200 (340)
-||+|+.|++.... ....+.+|.+.++.+++++....|++++.||++++|+.....+ .++.. ...+..
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P 442 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP 442 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCc
Confidence 99999999765221 2234667888999999999888999999999999999876665 22321 122345
Q ss_pred eeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeecc-------CCCeeEEEECCCCCEEEEeeCCCcEEEEec
Q 019482 201 ELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-------RKPASVLSISLDGKYLAMGSKDGDICVVDV 273 (340)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 273 (340)
.++++-...... .++...-+.-.+++......+..+... ...+..+.++|.+.+.+++..|+.|+++|.
T Consensus 443 lsvd~~ss~~a~----~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn 518 (577)
T KOG0642|consen 443 LSVDRTSSRPAH----SLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDN 518 (577)
T ss_pred ceEeeccchhHh----hhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccc
Confidence 566665443211 222233333334444443333322211 135678889999999999999999999999
Q ss_pred cCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 274 KKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 274 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
.+++++... ..| ...++++++.|+|.+|++++.||.+++|+++.+.
T Consensus 519 ~~~~~l~s~-~a~-~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 519 KTGKILHSM-VAH-KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred cccccchhe-eec-cceecceeecCCCceEEeecCCceeehhhccchh
Confidence 999998876 356 4689999999999999999999999999997554
No 167
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.6e-22 Score=154.81 Aligned_cols=203 Identities=13% Similarity=0.115 Sum_probs=152.6
Q ss_pred CCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCcee-----eccccCccceeEEEecCCCCeEE-EeeCCCeEEEEEc
Q 019482 110 QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-----LDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKT 183 (340)
Q Consensus 110 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~v~iwd~ 183 (340)
.|...|++++|+.||++|++++.|+.|++|+++..+.. +.... -+..+.+.|.||.+-++ ++-...++++|.+
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve-~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~ 162 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE-YDHPTRVVFAPDCKSVVVSVKRGNKLCVYKL 162 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc-CCCceEEEECCCcceEEEEEccCCEEEEEEe
Confidence 48899999999999999999999999999999864321 11111 12567899999887544 4455678999987
Q ss_pred cCCe---eEE--------EeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEE
Q 019482 184 EDGV---AWT--------FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI 252 (340)
Q Consensus 184 ~~~~---~~~--------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 252 (340)
...+ ... .+...+...+..+-...++.+ +++++.|..|.+||++ |+.+..+......-+..+.
T Consensus 163 ~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~-----imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 163 VKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKY-----IMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred eecccCCCCcccccccccccchhcccceEEEeecCCceE-----EEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 5321 111 122223334555555556665 7899999999999999 8888888877777788899
Q ss_pred CCCCCEEEEeeCCCcEEEEecc---Cce---Eeecc-cccccccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482 253 SLDGKYLAMGSKDGDICVVDVK---KME---INHWS-KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 253 s~~~~~l~~~~~dg~i~i~d~~---~~~---~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
||+|+++++++-.-.|++|.+- .|. ..+.+ ..+| ...|..++|+|+...+++.|.||+++|||.+..
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH-~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH-QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc-hhheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence 9999999999999999999863 222 22222 2466 689999999999999999999999999998753
No 168
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.91 E-value=4.3e-21 Score=149.76 Aligned_cols=244 Identities=18% Similarity=0.180 Sum_probs=185.3
Q ss_pred CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC--CcEEEEe
Q 019482 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--GHLRIMH 140 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~~~d 140 (340)
...++.+.|+.+...|..|+.|| .++|+........... .....|--+-|+.. ++|..+.+ ..+++++
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~-------~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~ 74 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKD-------TEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVH 74 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhccc-------CCCeEEEEeecccc--eeEEEecCCCceEEEEE
Confidence 34567777999999999999999 8999887654311111 12234555666544 55555443 4599999
Q ss_pred CCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEec
Q 019482 141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR 220 (340)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 220 (340)
.+.+..+..+. ...+|.++.++ -+.|+++-.+ .|+|||+++.+.+.++......+-.-++++|+....+++ .-..
T Consensus 75 ~Kk~~~ICe~~-fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylA-yp~s 149 (391)
T KOG2110|consen 75 FKKKTTICEIF-FPTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLA-YPGS 149 (391)
T ss_pred cccCceEEEEe-cCCceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEE-ecCC
Confidence 88777665543 34578999988 4456666544 599999999999998875433333455566555432221 2234
Q ss_pred CCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCc-EEEEeccCceEeecccccccccceeeEEEecC
Q 019482 221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGD-ICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (340)
Q Consensus 221 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~ 299 (340)
...|.|.+||+.+.+++..+..|++++.+++|+++|.+||++++.|+ ||+|.+.+++.+..+..+.....|.+++|+||
T Consensus 150 ~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 150 TTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred CCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence 45799999999999999999999999999999999999999999986 88999999999998887766668999999999
Q ss_pred CeEEEEEecCCcEEEEEecCCC
Q 019482 300 QRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 300 ~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
+++|++.|..++|+|+.++...
T Consensus 230 s~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CCeEEEecCCCeEEEEEecccc
Confidence 9999999999999999998654
No 169
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.90 E-value=4.4e-22 Score=165.65 Aligned_cols=159 Identities=19% Similarity=0.227 Sum_probs=128.4
Q ss_pred ceeEEEecC-CCCeEEEeeCCCeEEEEEccCC-------eeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEE
Q 019482 156 SVLDMDFSL-DSEFLATTSTDGSARIWKTEDG-------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227 (340)
Q Consensus 156 ~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~ 227 (340)
.|+++.|.| |...|++++.||.|++|.+..+ .+...+. .|.+.|+++.|+|--..+ +++++.|.+|+
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt-~h~eKI~slRfHPLAadv----La~asyd~Ti~ 703 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILT-IHGEKITSLRFHPLAADV----LAVASYDSTIE 703 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeee-cccceEEEEEecchhhhH----hhhhhccceee
Confidence 578899999 8889999999999999998753 2333344 455689999999975543 68889999999
Q ss_pred EEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEe
Q 019482 228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS 307 (340)
Q Consensus 228 i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 307 (340)
+||+++++....+.+|...|..++|||+|+.+++.+.||+|++|+.++++....-..+..+..--.+.|.-||+++++.+
T Consensus 704 lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~G 783 (1012)
T KOG1445|consen 704 LWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVG 783 (1012)
T ss_pred eeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEec
Confidence 99999999989999999999999999999999999999999999998876543322233344556788999999999888
Q ss_pred cCC----cEEEEEecC
Q 019482 308 KEW----GAMITKLTV 319 (340)
Q Consensus 308 ~dg----~i~iw~~~~ 319 (340)
.|. .|.+|+-..
T Consensus 784 fdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 784 FDKSSERQVQMYDAQT 799 (1012)
T ss_pred ccccchhhhhhhhhhh
Confidence 773 466666543
No 170
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.90 E-value=2.4e-21 Score=152.36 Aligned_cols=205 Identities=14% Similarity=0.185 Sum_probs=165.0
Q ss_pred CCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCC-------ceeeccccCccceeEEEecC-CCCeEEEeeCCCeEEE
Q 019482 110 QDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSL-------RIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARI 180 (340)
Q Consensus 110 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~-------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~i 180 (340)
.|.++|..++|+| +.+.||+|++|.+|.||++..+ +.+..+.+|...|.-++|+| -.+.|++++.|.+|.+
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~i 158 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSI 158 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEE
Confidence 4899999999999 6678999999999999998754 34556778888999999999 5567999999999999
Q ss_pred EEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCC-CeeEEEECCCCCEE
Q 019482 181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK-PASVLSISLDGKYL 259 (340)
Q Consensus 181 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l 259 (340)
||+.+++.+.++. |...|+++.|+.+|.+ +.+.+.|..|+|||.++++.+..-..|.+ .-..+.|-.+|..+
T Consensus 159 Wnv~tgeali~l~--hpd~i~S~sfn~dGs~-----l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 159 WNVGTGEALITLD--HPDMVYSMSFNRDGSL-----LCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF 231 (472)
T ss_pred EeccCCceeeecC--CCCeEEEEEeccCCce-----eeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence 9999999988886 6678999999999998 89999999999999999999888777764 34456677888865
Q ss_pred EEee---CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEe-cCCcEEEEEecCCC
Q 019482 260 AMGS---KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS-KEWGAMITKLTVPA 321 (340)
Q Consensus 260 ~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~ 321 (340)
.+|. .+.++-+||....+....+.....++.|.---|.+|..++..+| .|+.|+-|.+....
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 5553 47789999987755433332233245666666788887765554 59999999997655
No 171
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.90 E-value=6.1e-22 Score=152.13 Aligned_cols=246 Identities=15% Similarity=0.163 Sum_probs=181.2
Q ss_pred CceeEEeeeeecCCC-ccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCC-CeEEEE
Q 019482 4 GGTVTCGSWIKRPEN-VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCS 81 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~-~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~ 81 (340)
....+-++|+-+..+ .-++|.||..| .|++.++. .......+.+|...|+.+.|+|+. ++++++
T Consensus 89 ~Esfytcsw~yd~~~~~p~la~~G~~G------vIrVid~~--------~~~~~~~~~ghG~sINeik~~p~~~qlvls~ 154 (385)
T KOG1034|consen 89 DESFYTCSWSYDSNTGNPFLAAGGYLG------VIRVIDVV--------SGQCSKNYRGHGGSINEIKFHPDRPQLVLSA 154 (385)
T ss_pred CcceEEEEEEecCCCCCeeEEeeccee------EEEEEecc--------hhhhccceeccCccchhhhcCCCCCcEEEEe
Confidence 455688999986654 45677666544 49999887 455556688999999999999975 588899
Q ss_pred ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeec------------
Q 019482 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD------------ 149 (340)
Q Consensus 82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~------------ 149 (340)
+.|..|++|++++..++..+-+-+ .|.+.|.++.|+++|.+|++++.|.+|++|++...+....
T Consensus 155 SkD~svRlwnI~~~~Cv~VfGG~e----gHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t 230 (385)
T KOG1034|consen 155 SKDHSVRLWNIQTDVCVAVFGGVE----GHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKT 230 (385)
T ss_pred cCCceEEEEeccCCeEEEEecccc----cccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCc
Confidence 999999999999999887775433 5899999999999999999999999999999973221100
Q ss_pred ----------------cccCccceeEEEecCCCCeEEEeeCCCeEEEEEc-cCCeeEEEee------------cCCCCce
Q 019482 150 ----------------EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKT-EDGVAWTFLT------------RNSDEKI 200 (340)
Q Consensus 150 ----------------~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~-~~~~~~~~~~------------~~~~~~v 200 (340)
..-|...|.|+.|- |+++++=+-++.|..|.. +-++.+...+ .-....+
T Consensus 231 ~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~i 308 (385)
T KOG1034|consen 231 TRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDI 308 (385)
T ss_pred cCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccce
Confidence 11133355666665 688999888999999987 2222211111 0112234
Q ss_pred eeEEE--ccCCCcceEEEEEecCCcceEEEEECCCCcEEee----eeccCCCeeEEEECCCCCEEEEeeCCCcEEEEecc
Q 019482 201 ELCRF--SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH----KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK 274 (340)
Q Consensus 201 ~~~~~--~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~----~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 274 (340)
+-+.| .|-++. ++.+...|.+.+||++..++... .......|...+|+.||..|+..++|+.|.-||..
T Consensus 309 Wfirf~~d~~~~~-----la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 309 WFIRFAFDPWQKM-----LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEEeecHHHHH-----HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 44444 455665 68888999999999998776311 11224578899999999999999999999999864
No 172
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.90 E-value=1.9e-21 Score=147.02 Aligned_cols=261 Identities=16% Similarity=0.178 Sum_probs=183.7
Q ss_pred CceeEEeeeeecCCCccEEEEcCC-CCcccCCCceEEEEeCCCCCCccc-CCeeeEEEe-cCCCCeeEEEEcCCCCeEEE
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKS-SRASSSPSVLEIFSFDPKTTSVYT-SPLVTYVFD-ESEGDPMTIAVNPSGDDFVC 80 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~-~~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~ 80 (340)
.++|..++=+|... .++++--. .+.++.--.+.||.+......... +..+...|. .+-+.|.|+.|.|++..+++
T Consensus 63 agEvw~las~P~d~--~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klas 140 (370)
T KOG1007|consen 63 AGEVWDLASSPFDQ--RILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLAS 140 (370)
T ss_pred CcceehhhcCCCCC--ceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEE
Confidence 46677777777533 44443222 111233345789988644433111 122223333 45568999999999999998
Q ss_pred EecCCCEEEEEecCcee-eeeeccccCCCCCCCCCeEEEEEec--CCCeEEEccCCCcEEEEeCCCCceeeccccCcc-c
Q 019482 81 STTNGGCKLFEVYGGAT-DINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-S 156 (340)
Q Consensus 81 ~~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~ 156 (340)
-. |..|.+|+++.... ...+.... ...+....++-+|+| +++.+++. .|+++..||+++..+...+...++ .
T Consensus 141 m~-dn~i~l~~l~ess~~vaev~ss~--s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~ 216 (370)
T KOG1007|consen 141 MD-DNNIVLWSLDESSKIVAEVLSSE--SAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQR 216 (370)
T ss_pred ec-cCceEEEEcccCcchheeecccc--cccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcce
Confidence 77 55699999987765 22222211 222556778889999 78888775 488999999999888877776664 7
Q ss_pred eeEEEecCCCC-eEEEeeCCCeEEEEEccCCee-EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC
Q 019482 157 VLDMDFSLDSE-FLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234 (340)
Q Consensus 157 i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 234 (340)
+..+.|+|+.+ +|++|+.||.|++||.+..+. +..+. .|...+.++.|+|....+ +++++.|..+.+|....-
T Consensus 217 vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-~HsHWvW~VRfn~~hdqL----iLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 217 VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-GHSHWVWAVRFNPEHDQL----ILSGGSDSAVNLSCASSV 291 (370)
T ss_pred eeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-CCceEEEEEEecCccceE----EEecCCCceeEEEecccc
Confidence 99999999765 588999999999999987554 45554 566799999999988774 788999999999875321
Q ss_pred -----------------------------cEEeeeeccCCCeeEEEECCCC-CEEEEeeCCCcEEEEeccC
Q 019482 235 -----------------------------NKIGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKK 275 (340)
Q Consensus 235 -----------------------------~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~ 275 (340)
..+..+..|...|.+++||.-. =.+|+-+.||.+.|=.+..
T Consensus 292 SSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 292 SSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 1234566778899999998744 4567779999998866543
No 173
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.9e-20 Score=137.39 Aligned_cols=283 Identities=11% Similarity=0.077 Sum_probs=195.0
Q ss_pred eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCc--ccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSV--YTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
.|++-+|+| ..++++.|. ..+.|.++++....... .+........++|+++|+.++|+ .++|++++
T Consensus 12 tvf~qa~sp---~~~~l~agn------~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g- 79 (325)
T KOG0649|consen 12 TVFAQAISP---SKQYLFAGN------LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG- 79 (325)
T ss_pred HHHHHhhCC---cceEEEEec------CCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-
Confidence 467778888 345566555 56669999887433222 22333445568999999999998 45666666
Q ss_pred CCCEEEEEecCceee---eeeccccCCCC----CCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccc
Q 019482 84 NGGCKLFEVYGGATD---INLLAKKMPPL----QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS 156 (340)
Q Consensus 84 d~~i~iw~~~~~~~~---~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 156 (340)
||.|+-|..+..... +.+.. ...+. -.-..|+++...|..+-++.++.|+.++-||+++|+....+.+|.+.
T Consensus 80 dG~V~gw~W~E~~es~~~K~lwe-~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY 158 (325)
T KOG0649|consen 80 DGLVYGWEWNEEEESLATKRLWE-VKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY 158 (325)
T ss_pred CceEEEeeehhhhhhccchhhhh-hcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcce
Confidence 499999987654321 11110 01111 12356889999997777777778999999999999999999999999
Q ss_pred eeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCC---------CCceeeEEEccCCCcceEEEEEecCCcceEE
Q 019482 157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS---------DEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227 (340)
Q Consensus 157 i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~ 227 (340)
+.++.--.....+++|+.||++|+||.++++.+..+.... ...|.+++-+. . -+.++....+.
T Consensus 159 vH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e--d------WlvCGgGp~ls 230 (325)
T KOG0649|consen 159 VHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE--D------WLVCGGGPKLS 230 (325)
T ss_pred eeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC--c------eEEecCCCcee
Confidence 9999885556679999999999999999999988775322 22344444433 3 35566778899
Q ss_pred EEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCC-eEEEEE
Q 019482 228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ-RVVLTA 306 (340)
Q Consensus 228 i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~ 306 (340)
+|.++..++...+.. ..++..+.|.. +.++++++.+.+.-|.+.. .........+ ....+..|+..- ++|-.+
T Consensus 231 lwhLrsse~t~vfpi-pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~G-vl~a~ip~~s--~~c~s~s~~~~p~k~~s~a 304 (325)
T KOG0649|consen 231 LWHLRSSESTCVFPI-PARVHLVDFVD--DCVLIGGEGNHVQSYTLNG-VLQANIPVES--TACYSASWQTSPIKFISIA 304 (325)
T ss_pred EEeccCCCceEEEec-ccceeEeeeec--ceEEEeccccceeeeeecc-EEEEeccCCc--cceeeecccCCceEEEEec
Confidence 999999988766654 45677788854 4788888888899998754 3333332233 245666665433 556667
Q ss_pred ecCCcEEEE
Q 019482 307 SKEWGAMIT 315 (340)
Q Consensus 307 ~~dg~i~iw 315 (340)
+..+.+.|+
T Consensus 305 g~s~~~~i~ 313 (325)
T KOG0649|consen 305 GFSNKLHIL 313 (325)
T ss_pred ccceeeeee
Confidence 777777665
No 174
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.89 E-value=8.5e-21 Score=162.49 Aligned_cols=267 Identities=12% Similarity=0.097 Sum_probs=191.5
Q ss_pred ceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC-CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCC
Q 019482 36 VLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGP 114 (340)
Q Consensus 36 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 114 (340)
.+.+|++.... .|. ..+. -...|.++.|+| +..+++.|..+|+|.+||+........ .........|..+
T Consensus 223 ~~~vW~~~~p~-----~Pe--~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-s~ls~~~~sh~~~ 293 (555)
T KOG1587|consen 223 VLLVWSLKNPN-----TPE--LVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-SGLSALEVSHSEP 293 (555)
T ss_pred eEEEEecCCCC-----Cce--EEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-cccccccccCCcC
Confidence 67888887432 222 2222 367899999999 556788889999999999987764211 1111223358899
Q ss_pred eEEEEEecCCC--eEEEccCCCcEEEEeCCCCceee-----ccc-------cCccceeEEEecC-CCCeEEEeeCCCeEE
Q 019482 115 QKCLSFSVDGS--RFAAGGVDGHLRIMHWPSLRIIL-----DEP-------KAHKSVLDMDFSL-DSEFLATTSTDGSAR 179 (340)
Q Consensus 115 v~~~~~~~~~~--~l~~~~~dg~i~~~d~~~~~~~~-----~~~-------~~~~~i~~~~~~~-~~~~l~~~~~d~~v~ 179 (340)
+..+.|..+.. -|++++.||.|..|+++.-.... ... .....+++++|.+ +-..++.|+.+|.|.
T Consensus 294 v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~ 373 (555)
T KOG1587|consen 294 VTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVY 373 (555)
T ss_pred eEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEE
Confidence 99999987554 49999999999999886433211 111 1122689999998 667799999999988
Q ss_pred EEEccCCeeE-------EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC-CCcEEeeeeccCCCeeEEE
Q 019482 180 IWKTEDGVAW-------TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRKPASVLS 251 (340)
Q Consensus 180 iwd~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~i~~~~ 251 (340)
--+....+.- ......+.++|+.+.++|-+..+ +..+.|..+++|... ...++..+..+...+++++
T Consensus 374 ~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~-----fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~va 448 (555)
T KOG1587|consen 374 KGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKN-----FLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVA 448 (555)
T ss_pred EEeccCCcccccccccccccccccCcceEeeecCCCccce-----eeeeccceeEeccccCCCCcchhhhhccceeeeeE
Confidence 7443322211 11123456789999999998874 333339999999998 6777777777777899999
Q ss_pred ECCCC-CEEEEeeCCCcEEEEeccCce--EeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 252 ISLDG-KYLAMGSKDGDICVVDVKKME--INHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 252 ~s~~~-~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
|||-. ..++++..||.|.+||+.... +..... .+ ....+.+.|+++|+.|+.|...|.++++++.
T Consensus 449 WSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~-~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 449 WSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK-VC-SPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred EcCcCceEEEEEcCCCceehhhhhccccCCccccc-cc-ccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 99954 678888889999999997543 332222 12 4567888899999999999999999999995
No 175
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.89 E-value=1.7e-21 Score=145.40 Aligned_cols=250 Identities=17% Similarity=0.144 Sum_probs=184.7
Q ss_pred CeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC
Q 019482 53 PLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV 132 (340)
Q Consensus 53 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 132 (340)
|.+.+.+.+|.+.|+++.|..+++ |.+|...|.|.+|++.+.+....+.. -+...|+.+.--|+ ..+.+-++
T Consensus 4 PdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~------~g~~~it~lq~~p~-d~l~tqgR 75 (323)
T KOG0322|consen 4 PDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRL------FGRLFITNLQSIPN-DSLDTQGR 75 (323)
T ss_pred CCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhh------hccceeeceeecCC-cchhhcCC
Confidence 444567889999999999987664 89999999999999988765443321 14567788888777 46777888
Q ss_pred CCcEEEEeCCCCceee------------------------c---c--------------------------ccCccceeE
Q 019482 133 DGHLRIMHWPSLRIIL------------------------D---E--------------------------PKAHKSVLD 159 (340)
Q Consensus 133 dg~i~~~d~~~~~~~~------------------------~---~--------------------------~~~~~~i~~ 159 (340)
|+.+.+|++.-+..+. . . ....+.+.+
T Consensus 76 d~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc 155 (323)
T KOG0322|consen 76 DPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMC 155 (323)
T ss_pred CceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceee
Confidence 9999999874311100 0 0 001123445
Q ss_pred EEecC-CCC--eEEEeeCCCeEEEEEccCCeeEEEee---------cCCCCceeeEEEccCCCcceEEEEEecCCcceEE
Q 019482 160 MDFSL-DSE--FLATTSTDGSARIWKTEDGVAWTFLT---------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227 (340)
Q Consensus 160 ~~~~~-~~~--~l~~~~~d~~v~iwd~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~ 227 (340)
..+.. ++. ++++|-.+|.+.+||+.++..+..+. ..+..++.++.+.+.-.. .+.++.+..+.
T Consensus 156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r-----Gisgga~dkl~ 230 (323)
T KOG0322|consen 156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR-----GISGGADDKLV 230 (323)
T ss_pred eeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC-----CcCCCccccce
Confidence 55433 333 36677789999999999875443332 234568999999876554 67788888899
Q ss_pred EEECCCC--c--EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEE
Q 019482 228 VYDISTW--N--KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVV 303 (340)
Q Consensus 228 i~d~~~~--~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 303 (340)
.|.+... . .-.+.......+..+.+-||++.+|+++.|+.||+|..++.+++..+. .| ...|++++|+|+...+
T Consensus 231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk-yH-sagvn~vAfspd~~lm 308 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK-YH-SAGVNAVAFSPDCELM 308 (323)
T ss_pred eeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh-hh-hcceeEEEeCCCCchh
Confidence 9988643 2 112233334568889999999999999999999999999999998874 56 5799999999999999
Q ss_pred EEEecCCcEEEEEe
Q 019482 304 LTASKEWGAMITKL 317 (340)
Q Consensus 304 ~~~~~dg~i~iw~~ 317 (340)
|++|.|+.|.+|++
T Consensus 309 AaaskD~rISLWkL 322 (323)
T KOG0322|consen 309 AAASKDARISLWKL 322 (323)
T ss_pred hhccCCceEEeeec
Confidence 99999999999986
No 176
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.1e-21 Score=149.90 Aligned_cols=270 Identities=14% Similarity=0.124 Sum_probs=189.0
Q ss_pred ccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC--CCCeEEEEecCCCEEEEEecCceeeeeeccccCCC
Q 019482 31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP 108 (340)
Q Consensus 31 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 108 (340)
+-+.+.+++|+.. +......+++|...++.++|.. ....+.+++.||+|++||++.......+.....
T Consensus 46 ~lSngsv~lyd~~--------tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~-- 115 (376)
T KOG1188|consen 46 SLSNGSVRLYDKG--------TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ-- 115 (376)
T ss_pred EecCCeEEEEecc--------chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC--
Confidence 3466779999987 3333456889999999999976 456889999999999999998776555443221
Q ss_pred CCCCCCeEEEEEecCCCeEEEccC----CCcEEEEeCCCCce-eecc-ccCccceeEEEecC-CCCeEEEeeCCCeEEEE
Q 019482 109 LQDAGPQKCLSFSVDGSRFAAGGV----DGHLRIMHWPSLRI-ILDE-PKAHKSVLDMDFSL-DSEFLATTSTDGSARIW 181 (340)
Q Consensus 109 ~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~-~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iw 181 (340)
...+..|++.+..++.+++|.. +-.|.+||++..+. +..+ ..|++.|+++.|+| +.++|++||.||-|.+|
T Consensus 116 --~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlf 193 (376)
T KOG1188|consen 116 --SGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLF 193 (376)
T ss_pred --CCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEee
Confidence 1246678888778888888863 56799999998766 4333 45677999999999 67899999999999999
Q ss_pred EccCCeeEEEee--cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCC------------Ce
Q 019482 182 KTEDGVAWTFLT--RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK------------PA 247 (340)
Q Consensus 182 d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~------------~i 247 (340)
|++....--.+. ..+...|.++.|..++-.. +..-+......+|+++.+.++..+....- .+
T Consensus 194 D~~~d~EeDaL~~viN~~sSI~~igw~~~~ykr----I~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~ 269 (376)
T KOG1188|consen 194 DTKKDNEEDALLHVINHGSSIHLIGWLSKKYKR----IMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYV 269 (376)
T ss_pred ecCCCcchhhHHHhhcccceeeeeeeecCCcce----EEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhe
Confidence 997543211111 1344569999999887211 45557788899999998876544433210 11
Q ss_pred eEEEECC-CCCEEEEeeC-CCcEEEEecc---Cc---eEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 248 SVLSISL-DGKYLAMGSK-DGDICVVDVK---KM---EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 248 ~~~~~s~-~~~~l~~~~~-dg~i~i~d~~---~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
-. ..+| +...++.++. -|...++-+. ++ +.+..+..+| ..-|+++.|...+.++.|||.||.+.+|..+
T Consensus 270 I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~-~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 270 IN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGH-EEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred ee-cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCc-HHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 11 1234 4455555544 5566665443 22 2333333334 5789999999889999999999999999963
No 177
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=8.8e-19 Score=151.92 Aligned_cols=287 Identities=20% Similarity=0.343 Sum_probs=211.7
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCC-CCeeEEEE-cCCCC-eEEE
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAV-NPSGD-DFVC 80 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~-~~~~~-~l~~ 80 (340)
...+.++.+.+.. ..++.++ .++.+.+|+..... .....+.++. ..+..+.+ ++++. .++.
T Consensus 65 ~~~i~~~~~~~~~---~~~~~~~------~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (466)
T COG2319 65 EDSITSIAFSPDG---ELLLSGS------SDGTIKLWDLDNGE-------KLIKSLEGLHDSSVSKLALSSPDGNSILLA 128 (466)
T ss_pred cceEEEEEECCCC---cEEEEec------CCCcEEEEEcCCCc-------eeEEEEeccCCCceeeEEEECCCcceEEec
Confidence 4567777887743 3444333 57779999987433 1233444433 36777777 88887 5555
Q ss_pred Eec-CCCEEEEEecC-ceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-CCcEEEEeCCCCceeeccccCccce
Q 019482 81 STT-NGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIILDEPKAHKSV 157 (340)
Q Consensus 81 ~~~-d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~i 157 (340)
.+. |+.+.+|+... ......+. .|...|..++|+|+++.+++++. |+.+++|++..+..+..+..|...+
T Consensus 129 ~~~~d~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 201 (466)
T COG2319 129 SSSLDGTVKLWDLSTPGKLIRTLE-------GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPV 201 (466)
T ss_pred cCCCCccEEEEEecCCCeEEEEEe-------cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCce
Confidence 444 89999999987 44333333 27788999999999998888886 9999999999877777777788899
Q ss_pred eEEEecCCCC-eEEEeeCCCeEEEEEccCCeeEE-EeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc
Q 019482 158 LDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWT-FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (340)
Q Consensus 158 ~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~ 235 (340)
.+++|+|++. .+++++.|+.+++||...+..+. .+..+.. .. ...|+|++.. +++++.|+.+++||.+...
T Consensus 202 ~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~-----~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSL-----LASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred EEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCE-----EEEecCCCcEEEeeecCCC
Confidence 9999999998 55555899999999988777777 4544333 33 3389999954 5688999999999999776
Q ss_pred E-EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc-ccccccceeeEEEecCCeEEEEE-ecCCcE
Q 019482 236 K-IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK-RLHLGTSIALVEFCPTQRVVLTA-SKEWGA 312 (340)
Q Consensus 236 ~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i 312 (340)
. +.....|...+.++.|.|++..+++++.|+.+.+||..+........ ..| ...+..+.|.+++..++.+ ..|+.+
T Consensus 275 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~ 353 (466)
T COG2319 275 SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGH-EGPVSSLSFSPDGSLLVSGGSDDGTI 353 (466)
T ss_pred cEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeeccc-CCceEEEEECCCCCEEEEeecCCCcE
Confidence 5 44445667899999999988888889889889999998877655543 345 3468999994332455555 678899
Q ss_pred EEEEecCCC
Q 019482 313 MITKLTVPA 321 (340)
Q Consensus 313 ~iw~~~~~~ 321 (340)
.+|++....
T Consensus 354 ~~~~~~~~~ 362 (466)
T COG2319 354 RLWDLRTGK 362 (466)
T ss_pred EeeecCCCc
Confidence 999887654
No 178
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.9e-21 Score=150.79 Aligned_cols=264 Identities=13% Similarity=0.060 Sum_probs=194.3
Q ss_pred CCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc
Q 019482 52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131 (340)
Q Consensus 52 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 131 (340)
.+.+...+.+|.+.|+++.|+.++++|++|+.|..+++|+++..-..............|...|.|++|.....++++|.
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~ 124 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE 124 (609)
T ss_pred cchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC
Confidence 34455667899999999999999999999999999999998643221111111112223678999999999999999999
Q ss_pred CCCcEEEEeCCCCceeeccccCc--cceeEEEecCCCCeEEEeeCCCeEEEEEccCCe-eEEE-eecCCCCceeeEEEcc
Q 019482 132 VDGHLRIMHWPSLRIILDEPKAH--KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV-AWTF-LTRNSDEKIELCRFSK 207 (340)
Q Consensus 132 ~dg~i~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~-~~~~~~~~v~~~~~~~ 207 (340)
.+++|..-|+++.+.+..+.... +.|..+..+|..+.|++.+.++.|.+||.+..+ .+.. +..........+.|+|
T Consensus 125 ~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP 204 (609)
T ss_pred CcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence 99999999999988776543222 379999999998999999999999999998765 2222 2234445688999999
Q ss_pred CCCcceEEEEEecCCcceEEEEECCCCcEE-eee---ecc---CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEee
Q 019482 208 DGTKPFLFCTVQRGDKALLAVYDISTWNKI-GHK---RLL---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH 280 (340)
Q Consensus 208 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~-~~~---~~~---~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 280 (340)
....+ +++....+-+.+||.+..... ... ... ......+.|+|+|..+++.-....-.+||+-+..+..
T Consensus 205 ~~P~L----i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V 280 (609)
T KOG4227|consen 205 ETPAL----ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFV 280 (609)
T ss_pred CCcee----EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccccee
Confidence 98764 677777888999999875421 111 111 1223567899999999888766667788887765543
Q ss_pred ccccccc------ccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 281 WSKRLHL------GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 281 ~~~~~~~------~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
.. ..|. ...+.+++|..|- .+++|+.+-.+++|.++...
T Consensus 281 ~k-~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ 325 (609)
T KOG4227|consen 281 LK-SDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRAN 325 (609)
T ss_pred Ee-ccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCc
Confidence 22 2221 1357788887654 49999999999999997543
No 179
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=2.3e-19 Score=155.53 Aligned_cols=250 Identities=23% Similarity=0.338 Sum_probs=199.6
Q ss_pred EEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCce-eeeeeccccCCCCCCCCCeEEEEE-ecCCC-eEEEccC-C
Q 019482 58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA-TDINLLAKKMPPLQDAGPQKCLSF-SVDGS-RFAAGGV-D 133 (340)
Q Consensus 58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~-~l~~~~~-d 133 (340)
.+..|...+..+.+.+.+..++.++.|+.+.+|+..... ....+.... ...+..+.+ ++++. .++..+. |
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~d 133 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLH------DSSVSKLALSSPDGNSILLASSSLD 133 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccC------CCceeeEEEECCCcceEEeccCCCC
Confidence 466789999999999999999999999999999998876 333332211 135666666 78777 5555444 8
Q ss_pred CcEEEEeCCC-CceeeccccCccceeEEEecCCCCeEEEeeC-CCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCc
Q 019482 134 GHLRIMHWPS-LRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (340)
Q Consensus 134 g~i~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (340)
+.+.+|+... ......+..|...|..++|+|+++.+++++. |+.+++|++..+..+..+.. +...+.+++|+|++..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 212 (466)
T COG2319 134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG-HTDPVSSLAFSPDGGL 212 (466)
T ss_pred ccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc-CCCceEEEEEcCCcce
Confidence 9999999987 6777778888889999999999998888885 99999999998777777765 5567999999999872
Q ss_pred ceEEEEEecCCcceEEEEECCCCcEEe-eeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE-eeccccccccc
Q 019482 212 PFLFCTVQRGDKALLAVYDISTWNKIG-HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI-NHWSKRLHLGT 289 (340)
Q Consensus 212 ~~~~~~~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~ 289 (340)
. +++++.|+.+++||...+..+. .+..|.... ...|+|++.++++++.|+.+++|++..... .... ..| ..
T Consensus 213 ~----~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~-~~ 285 (466)
T COG2319 213 L----IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGH-SS 285 (466)
T ss_pred E----EEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecC-Cc
Confidence 1 4445899999999999777776 566666654 338999999999999999999999987664 3333 445 67
Q ss_pred ceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 290 SIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 290 ~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
.+.++.|+|++..+++++.|+.+.+|+.....
T Consensus 286 ~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc
Confidence 99999999988888889999889999776554
No 180
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.87 E-value=1e-21 Score=167.92 Aligned_cols=251 Identities=13% Similarity=0.099 Sum_probs=195.1
Q ss_pred EEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcE
Q 019482 57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL 136 (340)
Q Consensus 57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 136 (340)
..+.+|.+.|+|+.|...|.++++|+.|..++||..++..+.....+ |.+.++.++.+.+..++++++.|..|
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rG-------hs~ditdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRG-------HSGDITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCC-------CccccchhccchhhhhhhhcccCceE
Confidence 45779999999999999999999999999999999988887666543 88999999999999999999999999
Q ss_pred EEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEE---eecCCCCcee------------
Q 019482 137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF---LTRNSDEKIE------------ 201 (340)
Q Consensus 137 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~---~~~~~~~~v~------------ 201 (340)
++|.+.++..+..+.+|.+.|++++|+|-. +.+.||++++||.+-.-.+.. +.......+.
T Consensus 257 rvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~ 332 (1113)
T KOG0644|consen 257 RVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFL 332 (1113)
T ss_pred EEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccc
Confidence 999999999999999999999999999954 677899999999871100000 0000000111
Q ss_pred --------------eEEEccCCCcceE-------EEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECC-CCCEE
Q 019482 202 --------------LCRFSKDGTKPFL-------FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL-DGKYL 259 (340)
Q Consensus 202 --------------~~~~~~~~~~~~~-------~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l 259 (340)
.++|....-. |. ....++-.+..+++|++.++..++.+.+|...+..+.++| +.+..
T Consensus 333 Tgs~d~ea~n~e~~~l~~~~~~li-f~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ 411 (1113)
T KOG0644|consen 333 TGSRDGEARNHEFEQLAWRSNLLI-FVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIA 411 (1113)
T ss_pred cccCCcccccchhhHhhhhccceE-EEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhh
Confidence 1111111110 00 0023344566788999999998888999999999999999 45666
Q ss_pred EEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 260 AMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 260 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
.+++.||+..|||+-.+.+++....+| ..+...+||+||..++....-|.++|....-.+
T Consensus 412 msag~dgst~iwdi~eg~pik~y~~gh--~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 412 MSAGYDGSTIIWDIWEGIPIKHYFIGH--GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred hhccCCCceEeeecccCCcceeeeccc--ceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 788999999999999998888776665 467788999999999998888999988775444
No 181
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.86 E-value=8.1e-20 Score=138.37 Aligned_cols=247 Identities=15% Similarity=0.197 Sum_probs=177.3
Q ss_pred CCCceeEEeeeeecCCC--ccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCe-eeEEEecCCCCeeEEEEcC-CCCe
Q 019482 2 EGGGTVTCGSWIKRPEN--VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPL-VTYVFDESEGDPMTIAVNP-SGDD 77 (340)
Q Consensus 2 ~~~~~v~~~~w~~~~~~--~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~-~~~~ 77 (340)
+..+|++.+.|+|+... -.++| ++...+++|....+.......-. ....-..+..++++..|+. +-++
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLA--------Ts~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~ 165 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLA--------TSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNL 165 (364)
T ss_pred CCCCCccceEecCCccccCcchhh--------cccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcce
Confidence 56789999999997632 24554 34456999999865443322111 1111234567899999987 5678
Q ss_pred EEEEecCCCEEEEEecCcee---eeeeccccCCCCCCCCCeEEEEEecCC-CeEEEccCCCcEEEEeCCCCceeeccc--
Q 019482 78 FVCSTTNGGCKLFEVYGGAT---DINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDEP-- 151 (340)
Q Consensus 78 l~~~~~d~~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~-- 151 (340)
|.+++-|-+..|||++++.. ..++ +.|..+|..++|...+ +.|++++.||.+++||++..+.-..+.
T Consensus 166 igtSSiDTTCTiWdie~~~~~~vkTQL-------IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~ 238 (364)
T KOG0290|consen 166 IGTSSIDTTCTIWDIETGVSGTVKTQL-------IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYED 238 (364)
T ss_pred eEeecccCeEEEEEEeeccccceeeEE-------EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecC
Confidence 88999999999999998632 2222 3488999999999855 478999999999999998765433222
Q ss_pred -cCccceeEEEecC-CCCeEEEeeCC-CeEEEEEccCCe-eEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEE
Q 019482 152 -KAHKSVLDMDFSL-DSEFLATTSTD-GSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227 (340)
Q Consensus 152 -~~~~~i~~~~~~~-~~~~l~~~~~d-~~v~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~ 227 (340)
..+.+...++|++ |-+++|+-..| ..|.|.|++... ++..+. .|.+.|+.++|.|..... +.++++|.+..
T Consensus 239 p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~-~H~a~VNgIaWaPhS~~h----ictaGDD~qal 313 (364)
T KOG0290|consen 239 PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR-NHQASVNGIAWAPHSSSH----ICTAGDDCQAL 313 (364)
T ss_pred CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhh-cCcccccceEecCCCCce----eeecCCcceEE
Confidence 2245788999998 56778776654 579999999754 455555 566789999999987754 78999999999
Q ss_pred EEECCCCc------EEeeeeccCCCeeEEEECC-CCCEEEEeeCCCcEEE
Q 019482 228 VYDISTWN------KIGHKRLLRKPASVLSISL-DGKYLAMGSKDGDICV 270 (340)
Q Consensus 228 i~d~~~~~------~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i 270 (340)
+||+.+.- ++..+. .++.|+.+.|++ .+.+++.+.. +++.+
T Consensus 314 iWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 314 IWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred EEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 99997532 222222 457899999997 5678887754 34443
No 182
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.86 E-value=6.4e-20 Score=149.94 Aligned_cols=210 Identities=11% Similarity=0.083 Sum_probs=162.5
Q ss_pred CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCcc
Q 019482 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK 155 (340)
Q Consensus 76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 155 (340)
+.|+.++.||.+.+.+-. ++...... .|.+.+.+-.|+|||.-|+++++||.|++|. ++|-....+.....
T Consensus 76 d~~~i~s~DGkf~il~k~-~rVE~sv~-------AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~ 146 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS-ARVERSIS-------AHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEE 146 (737)
T ss_pred ceEEEEcCCceEEEeccc-chhhhhhh-------hhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCc
Confidence 578889999988888743 33322222 3889999999999999999999999999998 44543334445556
Q ss_pred ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc
Q 019482 156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (340)
Q Consensus 156 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~ 235 (340)
+|.|++|.|+.+.++.+. .+.+.|=-+.....+..++ .|++-|.++.|++.... +++++.|-..++||-. |.
T Consensus 147 ~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~Wk-AHDGiiL~~~W~~~s~l-----I~sgGED~kfKvWD~~-G~ 218 (737)
T KOG1524|consen 147 SIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWR-AHDGLVLSLSWSTQSNI-----IASGGEDFRFKIWDAQ-GA 218 (737)
T ss_pred eeEEEEECCCCCceEEec-CCeEEEeecccccceeEEe-ccCcEEEEeecCccccc-----eeecCCceeEEeeccc-Cc
Confidence 899999999888777765 3577777776665556665 56788999999999987 8999999999999976 55
Q ss_pred EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEE
Q 019482 236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMIT 315 (340)
Q Consensus 236 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 315 (340)
.+..-..|+.+|++++|.|+ +.++.++.+ .++ +.... .+.|..++||+||..++.|...|.+.+-
T Consensus 219 ~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R------------~~~p~-~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 219 NLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TAR------------FSSPR-VGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ccccCChhccceeeeeeccc-cceeeeeee-eee------------ecCCC-ccceEEEEEcCCCceeeccccCceEEEe
Confidence 56666788899999999999 667766643 344 22223 4689999999999999999999887654
Q ss_pred Ee
Q 019482 316 KL 317 (340)
Q Consensus 316 ~~ 317 (340)
..
T Consensus 284 ~~ 285 (737)
T KOG1524|consen 284 YA 285 (737)
T ss_pred ee
Confidence 43
No 183
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=9.6e-21 Score=155.38 Aligned_cols=245 Identities=14% Similarity=0.122 Sum_probs=175.3
Q ss_pred ccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeee---ccccCC
Q 019482 31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINL---LAKKMP 107 (340)
Q Consensus 31 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~~~ 107 (340)
++.++.+.+|++......-........++.+|.++|.|++..+++..+++|+-||+|+.|++....-.... ..-...
T Consensus 312 ~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~ 391 (577)
T KOG0642|consen 312 ASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGT 391 (577)
T ss_pred eccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccc
Confidence 45788899999954333333356677899999999999999999999999999999999976522111100 011112
Q ss_pred CCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeecccc--CccceeEEEecCCC-CeEEEeeCCCeEEEEEcc
Q 019482 108 PLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK--AHKSVLDMDFSLDS-EFLATTSTDGSARIWKTE 184 (340)
Q Consensus 108 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~ 184 (340)
...|.+.|+.+++|+....|++++.||+++.|+...... ..+.. .++....+++-... ...++...-+.--+++++
T Consensus 392 l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~e 470 (577)
T KOG0642|consen 392 LLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDME 470 (577)
T ss_pred eeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhh
Confidence 235889999999999999999999999999999766554 22222 22334556654322 122222222333334444
Q ss_pred CCeeEEEeecC------CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCE
Q 019482 185 DGVAWTFLTRN------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKY 258 (340)
Q Consensus 185 ~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 258 (340)
..+.+..+... ....+..+.++|.+.. .+++..|+.|+++|..+++.+.....|...++++++.|+|-+
T Consensus 471 v~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~-----~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~ 545 (577)
T KOG0642|consen 471 VVSDLLIFESSASPGPRRYPQINKVVSHPTADI-----TFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPY 545 (577)
T ss_pred hhhheeeccccCCCcccccCccceEEecCCCCe-----eEecccCCceecccccccccchheeeccceecceeecCCCce
Confidence 44443333211 1134667888888875 788899999999999999999999999999999999999999
Q ss_pred EEEeeCCCcEEEEeccCceEeec
Q 019482 259 LAMGSKDGDICVVDVKKMEINHW 281 (340)
Q Consensus 259 l~~~~~dg~i~i~d~~~~~~~~~ 281 (340)
|++++.||.+++|.+....+...
T Consensus 546 l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 546 LMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred EEeecCCceeehhhccchheeec
Confidence 99999999999999876655543
No 184
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.86 E-value=5.4e-19 Score=135.66 Aligned_cols=254 Identities=15% Similarity=0.177 Sum_probs=180.6
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
..||+|.+|+++. ..+|.+. ..+.+.||+..... ......+++.|...|++++|+|..+.|++++.
T Consensus 10 ~~pitchAwn~dr---t~iAv~~------~~~evhiy~~~~~~-----~w~~~htls~Hd~~vtgvdWap~snrIvtcs~ 75 (361)
T KOG1523|consen 10 LEPITCHAWNSDR---TQIAVSP------NNHEVHIYSMLGAD-----LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSH 75 (361)
T ss_pred cCceeeeeecCCC---ceEEecc------CCceEEEEEecCCC-----CceeceehhhhCcceeEEeecCCCCceeEccC
Confidence 4689999999954 3455444 45569999886443 24566789999999999999999999999999
Q ss_pred CCCEEEEEe-cCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCcee----eccccCcccee
Q 019482 84 NGGCKLFEV-YGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII----LDEPKAHKSVL 158 (340)
Q Consensus 84 d~~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~----~~~~~~~~~i~ 158 (340)
|..-++|.. ..++....+.. ++++..++++.|+|..+.|++|+....|.||=++..+-= ..-..+...|.
T Consensus 76 drnayVw~~~~~~~WkptlvL-----lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~ 150 (361)
T KOG1523|consen 76 DRNAYVWTQPSGGTWKPTLVL-----LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVT 150 (361)
T ss_pred CCCccccccCCCCeeccceeE-----EEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCcccccee
Confidence 999999998 44433222221 237789999999999999999999999999987654321 12234456899
Q ss_pred EEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEe
Q 019482 159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG 238 (340)
Q Consensus 159 ~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~ 238 (340)
+++|+|++-+|++|+.|+.++++..- ++.+.... +=.|-|.. +.-|+.+.
T Consensus 151 sldWhpnnVLlaaGs~D~k~rVfSay----IK~Vdekp-------ap~pWgsk-------------------~PFG~lm~ 200 (361)
T KOG1523|consen 151 SLDWHPNNVLLAAGSTDGKCRVFSAY----IKGVDEKP-------APTPWGSK-------------------MPFGQLMS 200 (361)
T ss_pred eeeccCCcceecccccCcceeEEEEe----eeccccCC-------CCCCCccC-------------------CcHHHHHH
Confidence 99999999999999999999999742 22222111 11233332 11133334
Q ss_pred eeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce-EeecccccccccceeeEEEecCCeEEEEEecC
Q 019482 239 HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME-INHWSKRLHLGTSIALVEFCPTQRVVLTASKE 309 (340)
Q Consensus 239 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 309 (340)
++....+.+..+.|+|+|..|+-.+.|..+.+-|..... .+......+ -|..++.|-.+.. ++.++.|
T Consensus 201 E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~--lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 201 EASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQ--LPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred hhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhcc--CCceeeEeecCCc-eeecCCC
Confidence 444556789999999999999999999999999987664 333332222 4777888865433 4444444
No 185
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.85 E-value=8.7e-20 Score=136.37 Aligned_cols=228 Identities=16% Similarity=0.170 Sum_probs=165.9
Q ss_pred ccCCCceEEEEeCCCCCCcccCCeeeEEEe-cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeee----------
Q 019482 31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFD-ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI---------- 99 (340)
Q Consensus 31 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~---------- 99 (340)
+...+.+.+|.+..... ...++ .|...|+.+.--|+ +.+.+-++|..+.+|++.......
T Consensus 31 g~~~G~V~~w~lqt~r~--------~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslg 101 (323)
T KOG0322|consen 31 GLSVGIVKMWVLQTERD--------LPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLG 101 (323)
T ss_pred ccccceEEEEEeecCcc--------chhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccc
Confidence 34566799999984332 22234 46677888888887 568888999999999987632100
Q ss_pred ----eecc-------------c-------------------cCCCCCCCCCeEEEEEec-CCC--eEEEccCCCcEEEEe
Q 019482 100 ----NLLA-------------K-------------------KMPPLQDAGPQKCLSFSV-DGS--RFAAGGVDGHLRIMH 140 (340)
Q Consensus 100 ----~~~~-------------~-------------------~~~~~~~~~~v~~~~~~~-~~~--~l~~~~~dg~i~~~d 140 (340)
.+.. + ........+.+.|..+.. ++. ++++|.++|.+.+||
T Consensus 102 FCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd 181 (323)
T KOG0322|consen 102 FCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWD 181 (323)
T ss_pred cccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEE
Confidence 0000 0 000011234566666433 233 567888999999999
Q ss_pred CCCCceee----------ccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCC--ee--EEEeecCCCCceeeEEEc
Q 019482 141 WPSLRIIL----------DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG--VA--WTFLTRNSDEKIELCRFS 206 (340)
Q Consensus 141 ~~~~~~~~----------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~--~~--~~~~~~~~~~~v~~~~~~ 206 (340)
+.++..+. ....|..++.++.+.+.-..=++|+.+..+..|++... .. ..++...+ -.+..+...
T Consensus 182 ~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn-pGv~gvrIR 260 (323)
T KOG0322|consen 182 LSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN-PGVSGVRIR 260 (323)
T ss_pred ccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecC-CCccceEEc
Confidence 99874333 34456678999999886666788888889999988643 21 12222223 348889999
Q ss_pred cCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEec
Q 019482 207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDV 273 (340)
Q Consensus 207 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 273 (340)
||++. +++++.|+.|++|..++.+++..++.|...+++++|+|+...+|.++.|++|.+|++
T Consensus 261 pD~KI-----lATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 261 PDGKI-----LATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cCCcE-----EeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99997 899999999999999999999999999999999999999999999999999999986
No 186
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.3e-19 Score=140.59 Aligned_cols=293 Identities=10% Similarity=0.028 Sum_probs=205.0
Q ss_pred CCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEE-EecCCCCeeEEEEcCCCCeEEE
Q 019482 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYV-FDESEGDPMTIAVNPSGDDFVC 80 (340)
Q Consensus 2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~ 80 (340)
++.+-|.++.|+.+ .++||+|+. +-.+.+|.++..-... .|.+... -..|...|.|++|......+++
T Consensus 54 ~H~GCiNAlqFS~N---~~~L~SGGD------D~~~~~W~~de~~~~k--~~KPI~~~~~~H~SNIF~L~F~~~N~~~~S 122 (609)
T KOG4227|consen 54 EHTGCINALQFSHN---DRFLASGGD------DMHGRVWNVDELMVRK--TPKPIGVMEHPHRSNIFSLEFDLENRFLYS 122 (609)
T ss_pred hhccccceeeeccC---CeEEeecCC------cceeeeechHHHHhhc--CCCCceeccCccccceEEEEEccCCeeEec
Confidence 46788999999984 578998874 4559999987322211 2222221 2345688999999988899999
Q ss_pred EecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCce-ee--ccccCccce
Q 019482 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-IL--DEPKAHKSV 157 (340)
Q Consensus 81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~--~~~~~~~~i 157 (340)
|..+++|.+.|+++.+.+...... ...+.|+.+..+|-.+.|++.+.++.|.+||.+.... .. .........
T Consensus 123 G~~~~~VI~HDiEt~qsi~V~~~~-----~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F 197 (609)
T KOG4227|consen 123 GERWGTVIKHDIETKQSIYVANEN-----NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNF 197 (609)
T ss_pred CCCcceeEeeecccceeeeeeccc-----CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccc
Confidence 999999999999988765444322 1346899999999888999999999999999986552 11 122233467
Q ss_pred eEEEecC-CCCeEEEeeCCCeEEEEEccCCeeE-EEee---cCC--CCceeeEEEccCCCcceEEEEEecCCcceEEEEE
Q 019482 158 LDMDFSL-DSEFLATTSTDGSARIWKTEDGVAW-TFLT---RNS--DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD 230 (340)
Q Consensus 158 ~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~---~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d 230 (340)
..+.|+| .-.+|++.+..+-+-+||.+..+.. .... ... ...-.++.|+|+|.+ +++--....-.+||
T Consensus 198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q-----~msiRR~~~P~~~D 272 (609)
T KOG4227|consen 198 YTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQ-----FMSIRRGKCPLYFD 272 (609)
T ss_pred eeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCe-----ehhhhccCCCEEee
Confidence 8899999 4567888888899999999865431 1111 000 112357889999998 45545555566788
Q ss_pred CCCCcEEeeeeccC-------CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE----------------------eec
Q 019482 231 ISTWNKIGHKRLLR-------KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI----------------------NHW 281 (340)
Q Consensus 231 ~~~~~~~~~~~~~~-------~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~----------------------~~~ 281 (340)
+-+..+......|. ..+.+++|.-|. .+++|+.+=.|++|.+..... ...
T Consensus 273 ~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~ 351 (609)
T KOG4227|consen 273 FISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELT 351 (609)
T ss_pred eecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeE
Confidence 87755432222222 245667776554 499999999999998753110 011
Q ss_pred ccccccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482 282 SKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL 317 (340)
Q Consensus 282 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~ 317 (340)
...+| .+-++.+.|+|-..+|++.+-.+.++||.-
T Consensus 352 VLrGH-RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 352 VLRGH-RSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred EEecc-cccccceeecCCcceEeccchhhheecccc
Confidence 23466 468899999999999999999999999953
No 187
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.85 E-value=2.4e-20 Score=155.42 Aligned_cols=242 Identities=13% Similarity=0.159 Sum_probs=170.0
Q ss_pred ccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC-CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCC
Q 019482 31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL 109 (340)
Q Consensus 31 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 109 (340)
++..+.|.||++...+... +....-.+ ....|+.+.|.| |...||+++.||.|++|.+..+.........+....
T Consensus 599 ~g~gG~iai~el~~PGrLP--Dgv~p~l~--Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt 674 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLP--DGVMPGLF--NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILT 674 (1012)
T ss_pred cCCCceEEEEEcCCCCCCC--cccccccc--cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeee
Confidence 4566779999997544322 22222222 235699999999 677999999999999999987765554444333334
Q ss_pred CCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee
Q 019482 110 QDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA 188 (340)
Q Consensus 110 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~ 188 (340)
.|...|+.+.|+| -.+.|++++.|.+|++||+.+++...++.+|.+.|..++|+|+|+.+++.+.||+|++|+.++++.
T Consensus 675 ~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 675 IHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ 754 (1012)
T ss_pred cccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence 5888999999999 567899999999999999999999999999999999999999999999999999999999987654
Q ss_pred -EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc--EEeeeeccCC-CeeEEEECCCC-CEEEEee
Q 019482 189 -WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRK-PASVLSISLDG-KYLAMGS 263 (340)
Q Consensus 189 -~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~-~i~~~~~s~~~-~~l~~~~ 263 (340)
++.-.+.....-..+.|.-+|+++. ...+......+|.+||..+-. ++........ .+.--.+.+|. -++++|-
T Consensus 755 pv~Eg~gpvgtRgARi~wacdgr~vi-v~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGK 833 (1012)
T KOG1445|consen 755 PVYEGKGPVGTRGARILWACDGRIVI-VVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGK 833 (1012)
T ss_pred ccccCCCCccCcceeEEEEecCcEEE-EecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecC
Confidence 3333322233445677888998621 112223345678899876533 2222211111 11112344554 4566777
Q ss_pred CCCcEEEEeccCce
Q 019482 264 KDGDICVVDVKKME 277 (340)
Q Consensus 264 ~dg~i~i~d~~~~~ 277 (340)
.|..|.+|.+-...
T Consensus 834 GD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 834 GDRFVNMYEVIYES 847 (1012)
T ss_pred CCceEEEEEecCCC
Confidence 89999999875543
No 188
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.6e-18 Score=127.18 Aligned_cols=237 Identities=15% Similarity=0.191 Sum_probs=171.7
Q ss_pred CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccc---cCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEe
Q 019482 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAK---KMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH 140 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d 140 (340)
..|.+-+++|.+++|++|..+|.|.++.+.+.......... ......|.++++.++|. ..+|++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 34667789999999999999999999998753221111111 01123489999999998 33677765 59999997
Q ss_pred CCCCce------eec--cccCc-----cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEE-c
Q 019482 141 WPSLRI------ILD--EPKAH-----KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF-S 206 (340)
Q Consensus 141 ~~~~~~------~~~--~~~~~-----~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~-~ 206 (340)
.+.... ... .+.+. ..|+++-..|..+-++.++.|+.++-||+++|+...++.+|. ..+.++.- +
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHt-DYvH~vv~R~ 166 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHT-DYVHSVVGRN 166 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCc-ceeeeeeecc
Confidence 654322 111 11122 268899999977767777789999999999999999998655 57999888 4
Q ss_pred cCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC----------CCeeEEEECCCCCEEEEeeCCCcEEEEeccCc
Q 019482 207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR----------KPASVLSISLDGKYLAMGSKDGDICVVDVKKM 276 (340)
Q Consensus 207 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 276 (340)
.+++ +++++.||++++||+++++.+..+...+ ..|-+++ -+..++++|+ ...+.+|.+++.
T Consensus 167 ~~~q------ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGg-Gp~lslwhLrss 237 (325)
T KOG0649|consen 167 ANGQ------ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGG-GPKLSLWHLRSS 237 (325)
T ss_pred cCcc------eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecC-CCceeEEeccCC
Confidence 4454 8999999999999999999877665432 2344444 4556888775 457999999999
Q ss_pred eEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 277 EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 277 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
++...+.- ..++..+.|.. ..+++++..+.+.-|.+.
T Consensus 238 e~t~vfpi---pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 238 ESTCVFPI---PARVHLVDFVD--DCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred CceEEEec---ccceeEeeeec--ceEEEeccccceeeeeec
Confidence 88776643 35788888865 467777777788888775
No 189
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.84 E-value=4.6e-19 Score=152.58 Aligned_cols=220 Identities=18% Similarity=0.166 Sum_probs=149.2
Q ss_pred EEecCCCCeeEEEEcCCCCeEEEEecC---CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc-CC
Q 019482 58 VFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VD 133 (340)
Q Consensus 58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d 133 (340)
.+..|...+..++|+|||+.|+.++.+ ..|++||+.+++... +.. ..+....++|+|||+.|+.+. .+
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~-------~~g~~~~~~wSPDG~~La~~~~~~ 269 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VAS-------FRGHNGAPAFSPDGSRLAFASSKD 269 (429)
T ss_pred EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-Eec-------CCCccCceeECCCCCEEEEEEecC
Confidence 456678889999999999999987654 369999998765322 111 112334689999999888764 67
Q ss_pred CcEEEE--eCCCCceeeccccCccceeEEEecCCCCeEEEee-CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCC
Q 019482 134 GHLRIM--HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210 (340)
Q Consensus 134 g~i~~~--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (340)
|.+.+| |+.+++. ..+..+...+....|+|||+.|+.++ .++...||+++.......... +.. ....|+|+|+
T Consensus 270 g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~-~~~--~~~~~SpDG~ 345 (429)
T PRK01742 270 GVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG-GRG--YSAQISADGK 345 (429)
T ss_pred CcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec-CCC--CCccCCCCCC
Confidence 765555 6665553 34445555678899999999877655 578888888754222112222 222 4678999999
Q ss_pred cceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEecc--CceEeecccccccc
Q 019482 211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK--KMEINHWSKRLHLG 288 (340)
Q Consensus 211 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~ 288 (340)
. ++..+.++ +.+||+.+++....... .....+.|+|||++|+.++.++...+|++. +++..+.+. .| .
T Consensus 346 ~-----ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~-~~-~ 415 (429)
T PRK01742 346 T-----LVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP-GS-D 415 (429)
T ss_pred E-----EEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc-CC-C
Confidence 7 33444444 66699998875422222 233567899999999999999988888763 465555553 34 4
Q ss_pred cceeeEEEecC
Q 019482 289 TSIALVEFCPT 299 (340)
Q Consensus 289 ~~i~~~~~~~~ 299 (340)
..+...+|+|-
T Consensus 416 g~~~~p~wsp~ 426 (429)
T PRK01742 416 GQVKFPAWSPY 426 (429)
T ss_pred CCCCCcccCCC
Confidence 57888999984
No 190
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.84 E-value=4e-19 Score=152.92 Aligned_cols=231 Identities=18% Similarity=0.094 Sum_probs=151.2
Q ss_pred CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC---CcEEEEeCCCCceeeccccCccceeEE
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDM 160 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~i~~~ 160 (340)
+..|.+||.+.... ..+. .+...+..++|+|||+.|+.++.+ ..|++||+.+++... +.........+
T Consensus 183 ~~~i~i~d~dg~~~-~~lt-------~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~ 253 (429)
T PRK01742 183 PYEVRVADYDGFNQ-FIVN-------RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAP 253 (429)
T ss_pred eEEEEEECCCCCCc-eEec-------cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCce
Confidence 35799999876542 2221 255678999999999999887643 469999998875422 11122234568
Q ss_pred EecCCCCeEEEee-CCCeEEEE--EccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc-E
Q 019482 161 DFSLDSEFLATTS-TDGSARIW--KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-K 236 (340)
Q Consensus 161 ~~~~~~~~l~~~~-~d~~v~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~ 236 (340)
+|+|||+.|+.++ .+|.+.|| |+.+++. ..+.. +...+....|+|||+.+ ++++..++...+|+++... .
T Consensus 254 ~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~-~~~~~~~~~wSpDG~~i----~f~s~~~g~~~I~~~~~~~~~ 327 (429)
T PRK01742 254 AFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTS-GAGNNTEPSWSPDGQSI----LFTSDRSGSPQVYRMSASGGG 327 (429)
T ss_pred eECCCCCEEEEEEecCCcEEEEEEECCCCCe-Eeecc-CCCCcCCEEECCCCCEE----EEEECCCCCceEEEEECCCCC
Confidence 9999999888764 67765555 6555543 44443 34457889999999973 3344456777777764322 1
Q ss_pred EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482 237 IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK 316 (340)
Q Consensus 237 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~ 316 (340)
...+ .+.. ....|+|||++|+.++.++ +.+||+.+++...... .. ...++.|+|||++|+.++.++...+|.
T Consensus 328 ~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~-~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~ 399 (429)
T PRK01742 328 ASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS-TF---LDESPSISPNGIMIIYSSTQGLGKVLQ 399 (429)
T ss_pred eEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-CC---CCCCceECCCCCEEEEEEcCCCceEEE
Confidence 2222 2322 4578999999999887765 6679998887654322 11 245788999999999999999999888
Q ss_pred ecCCCCCCCCcccccccccccc
Q 019482 317 LTVPADWKGLSLPLLHSHSQNS 338 (340)
Q Consensus 317 ~~~~~~~~~~~~~~~h~~~v~~ 338 (340)
+..... +.......|.+.+..
T Consensus 400 ~~~~~G-~~~~~l~~~~g~~~~ 420 (429)
T PRK01742 400 LVSADG-RFKARLPGSDGQVKF 420 (429)
T ss_pred EEECCC-CceEEccCCCCCCCC
Confidence 753222 122223345554443
No 191
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.84 E-value=8.9e-19 Score=150.23 Aligned_cols=258 Identities=14% Similarity=0.117 Sum_probs=183.8
Q ss_pred CCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCC--CeEE
Q 019482 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG--DDFV 79 (340)
Q Consensus 2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~ 79 (340)
+...+|+|+.|+|..+ .+++.|. .+|.|.+|+......... .+. ......|..++..+.|..+. .-++
T Consensus 240 ~~~s~v~~~~f~p~~p--~ll~gG~------y~GqV~lWD~~~~~~~~~-s~l-s~~~~sh~~~v~~vvW~~~~~~~~f~ 309 (555)
T KOG1587|consen 240 ESPSEVTCLKFCPFDP--NLLAGGC------YNGQVVLWDLRKGSDTPP-SGL-SALEVSHSEPVTAVVWLQNEHNTEFF 309 (555)
T ss_pred ecCCceeEEEeccCCc--ceEEeec------cCceEEEEEccCCCCCCC-ccc-ccccccCCcCeEEEEEeccCCCCceE
Confidence 3467899999999654 6777666 455699999875544221 122 22345689999999997644 4599
Q ss_pred EEecCCCEEEEEecCceeeeeecccc-----CCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCC---Cc-----
Q 019482 80 CSTTNGGCKLFEVYGGATDINLLAKK-----MPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPS---LR----- 145 (340)
Q Consensus 80 ~~~~d~~i~iw~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~---~~----- 145 (340)
+++.||.|..|+++.-.......... .........+++++|.+ +...++.|+.+|.|.--+... ..
T Consensus 310 s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~ 389 (555)
T KOG1587|consen 310 SLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYK 389 (555)
T ss_pred EEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccc
Confidence 99999999999887544322221111 11122346789999988 667899999999887733222 11
Q ss_pred eeeccccCccceeEEEecCCCCe-EEEeeCCCeEEEEEcc-CCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCc
Q 019482 146 IILDEPKAHKSVLDMDFSLDSEF-LATTSTDGSARIWKTE-DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK 223 (340)
Q Consensus 146 ~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~v~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d 223 (340)
....+..|.++|.++.++|-+.. +++++ |.+++||... ...++..+... ...+++++|||....+ +++...+
T Consensus 390 ~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~-~~~v~~vaWSptrpav----F~~~d~~ 463 (555)
T KOG1587|consen 390 GHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSS-PDYVTDVAWSPTRPAV----FATVDGD 463 (555)
T ss_pred ccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhc-cceeeeeEEcCcCceE----EEEEcCC
Confidence 12234456679999999996654 45554 9999999987 55666666543 3469999999998753 5777889
Q ss_pred ceEEEEECCCC--cEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC
Q 019482 224 ALLAVYDISTW--NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (340)
Q Consensus 224 ~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 275 (340)
|.|.+||+... .++..........+.+.|+++|+.|++|...|.+++|++..
T Consensus 464 G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 464 GNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 99999999754 34445555566678889999999999999999999999964
No 192
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=4.7e-18 Score=146.67 Aligned_cols=270 Identities=17% Similarity=0.167 Sum_probs=190.9
Q ss_pred CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCc-e--eeeeeccccCCCC
Q 019482 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGG-A--TDINLLAKKMPPL 109 (340)
Q Consensus 33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~-~--~~~~~~~~~~~~~ 109 (340)
.+..+.+|.....+... .....-..|...+++.++||.++++|++..||.|.+|.-... . .......
T Consensus 179 ~~~~~~~~~v~~~~~~~----~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH------ 248 (792)
T KOG1963|consen 179 HMCKIHIYFVPKHTKHT----SSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLH------ 248 (792)
T ss_pred EeeeEEEEEecccceee----ccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEE------
Confidence 34456777766433111 111112346777999999999999999999999999975441 1 1111111
Q ss_pred CCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeE
Q 019482 110 QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW 189 (340)
Q Consensus 110 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~ 189 (340)
=|..+|.+++|+++|.+|++|+..+.+.+|.+.+++ .+-++.-..+|..+.++||+.+.+....|+.|.+-...+....
T Consensus 249 WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k 327 (792)
T KOG1963|consen 249 WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIK 327 (792)
T ss_pred ecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhh
Confidence 167899999999999999999999999999999988 4446666679999999999999999999999999887654443
Q ss_pred EEeec----------CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeecc-----------CCCee
Q 019482 190 TFLTR----------NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-----------RKPAS 248 (340)
Q Consensus 190 ~~~~~----------~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-----------~~~i~ 248 (340)
.++.+ ...+-.+.++++|..+. ++..+..+.|.+||+-+.+.+..+... .-.++
T Consensus 328 ~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~-----~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~it 402 (792)
T KOG1963|consen 328 STISGIKPPTPSTKTRPQSLTTGVSIDPRTNS-----LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGIT 402 (792)
T ss_pred hhccCccCCCccccccccccceeEEEcCCCCc-----eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeee
Confidence 33321 12334667888885444 678889999999999887766554321 12467
Q ss_pred EEEECCCCCEEEEee--------CC--CcEEEEeccC----ceEeecccccccccceeeEEE-ecCCe-EEEEEecCCcE
Q 019482 249 VLSISLDGKYLAMGS--------KD--GDICVVDVKK----MEINHWSKRLHLGTSIALVEF-CPTQR-VVLTASKEWGA 312 (340)
Q Consensus 249 ~~~~s~~~~~l~~~~--------~d--g~i~i~d~~~----~~~~~~~~~~~~~~~i~~~~~-~~~~~-~l~~~~~dg~i 312 (340)
+++.+..|.+++++- .| -.+++|-... ......+...|. ..+...++ ++... ..++++.||.+
T Consensus 403 av~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~-~~~vat~~~~~~rs~~~vta~~dg~~ 481 (792)
T KOG1963|consen 403 AVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHG-NAFVATIFLNPTRSVRCVTASVDGDF 481 (792)
T ss_pred eehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCC-ceeEEEEEecCcccceeEEeccCCeE
Confidence 778888899999873 23 3578896644 334444556674 44444444 44433 79999999999
Q ss_pred EEEEecC
Q 019482 313 MITKLTV 319 (340)
Q Consensus 313 ~iw~~~~ 319 (340)
+||-+..
T Consensus 482 KiW~~~~ 488 (792)
T KOG1963|consen 482 KIWVFTD 488 (792)
T ss_pred EEEEEec
Confidence 9999943
No 193
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=2.5e-18 Score=151.08 Aligned_cols=292 Identities=12% Similarity=0.158 Sum_probs=193.5
Q ss_pred eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEec---CCCCeeEEEEcC--CCCeEEEE
Q 019482 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE---SEGDPMTIAVNP--SGDDFVCS 81 (340)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~--~~~~l~~~ 81 (340)
-..+.|+|-.+ .+++ +.....|.+|+++.... + ..+.. -...|+.+.+-. |...+++|
T Consensus 1067 pk~~~~hpf~p--~i~~-------ad~r~~i~vwd~e~~~~-l-------~~F~n~~~~~t~Vs~l~liNe~D~aLlLta 1129 (1387)
T KOG1517|consen 1067 PKTLKFHPFEP--QIAA-------ADDRERIRVWDWEKGRL-L-------NGFDNGAFPDTRVSDLELINEQDDALLLTA 1129 (1387)
T ss_pred CceeeecCCCc--eeEE-------cCCcceEEEEecccCce-e-------ccccCCCCCCCccceeeeecccchhheeee
Confidence 34566666432 4455 33455699999974322 1 11111 234588888865 44588999
Q ss_pred ecCCCEEEEEecCce-eeeeeccc----cCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCcc-
Q 019482 82 TTNGGCKLFEVYGGA-TDINLLAK----KMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK- 155 (340)
Q Consensus 82 ~~d~~i~iw~~~~~~-~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~- 155 (340)
+.||.|+||+-.... ...++... ........+.-.-+.|.....+|++++.-..|+|||......+..++...+
T Consensus 1130 s~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t 1209 (1387)
T KOG1517|consen 1130 SSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSST 1209 (1387)
T ss_pred ccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCc
Confidence 999999999864332 11111110 000000111114567877655666666678999999988777766655443
Q ss_pred ceeEEEecC-CCCeEEEeeCCCeEEEEEccCCee---EEEeecCCCCc--eeeEEEccCCCcceEEEEEecCCcceEEEE
Q 019482 156 SVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVA---WTFLTRNSDEK--IELCRFSKDGTKPFLFCTVQRGDKALLAVY 229 (340)
Q Consensus 156 ~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~ 229 (340)
.++++.-+. .|+.+++|-.||.|++||.+...+ +.... .|... |..+.+.+.|-.- +++++.+|.|++|
T Consensus 1210 ~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R-~h~~~~~Iv~~slq~~G~~e----lvSgs~~G~I~~~ 1284 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR-EHNDVEPIVHLSLQRQGLGE----LVSGSQDGDIQLL 1284 (1387)
T ss_pred cceeecccccCCceEEEeecCCceEEeecccCCccccceeec-ccCCcccceeEEeecCCCcc----eeeeccCCeEEEE
Confidence 577776654 578999999999999999986433 33333 33334 8888888866432 7999999999999
Q ss_pred ECCCCcEEeeee--cc---CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecc----cccccccceeeEEEecCC
Q 019482 230 DISTWNKIGHKR--LL---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS----KRLHLGTSIALVEFCPTQ 300 (340)
Q Consensus 230 d~~~~~~~~~~~--~~---~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~i~~~~~~~~~ 300 (340)
|++.......+. .+ ++..+++..+++...+|+|+. +.|+||++...+..... ..+.....+.+++|+|--
T Consensus 1285 DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1285 DLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHR 1363 (1387)
T ss_pred ecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchh
Confidence 999843222222 11 235899999999999999998 99999998654332111 111123578999999999
Q ss_pred eEEEEEecCCcEEEEEecCCC
Q 019482 301 RVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 301 ~~l~~~~~dg~i~iw~~~~~~ 321 (340)
-++|+|+.|..|.||....+.
T Consensus 1364 ~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1364 LLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred HhhhhccCCceEEEeecCCcC
Confidence 999999999999999987654
No 194
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=2.4e-19 Score=150.40 Aligned_cols=231 Identities=15% Similarity=0.183 Sum_probs=179.2
Q ss_pred CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC
Q 019482 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL 144 (340)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 144 (340)
.|+.++|-|||..|+.+..+. +.+||...+.....+.. |...|+|++|+.||+.+++|+.|..|.+|+-.-
T Consensus 14 ci~d~afkPDGsqL~lAAg~r-lliyD~ndG~llqtLKg-------HKDtVycVAys~dGkrFASG~aDK~VI~W~~kl- 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSR-LLVYDTSDGTLLQPLKG-------HKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL- 84 (1081)
T ss_pred chheeEECCCCceEEEecCCE-EEEEeCCCccccccccc-------ccceEEEEEEccCCceeccCCCceeEEEecccc-
Confidence 799999999999998887776 99999999887666654 889999999999999999999999999998542
Q ss_pred ceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc
Q 019482 145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA 224 (340)
Q Consensus 145 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~ 224 (340)
+-+.++ .|.+.|.|+.|+|-...|++++- ...-+|........+ . .....+.+++|..||++ ++.+-.+|
T Consensus 85 EG~LkY-SH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K-~--kss~R~~~CsWtnDGqy-----lalG~~nG 154 (1081)
T KOG1538|consen 85 EGILKY-SHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSK-H--KSSSRIICCSWTNDGQY-----LALGMFNG 154 (1081)
T ss_pred cceeee-ccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHHh-h--hhheeEEEeeecCCCcE-----EEEeccCc
Confidence 333333 57789999999999999999985 357788876543322 2 23456899999999998 78888899
Q ss_pred eEEEEECCCCcEEeeee---ccCCCeeEEEECCCC-----CEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEE
Q 019482 225 LLAVYDISTWNKIGHKR---LLRKPASVLSISLDG-----KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF 296 (340)
Q Consensus 225 ~i~i~d~~~~~~~~~~~---~~~~~i~~~~~s~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~ 296 (340)
+|.+-+-. +++...+. +.+.+|.+++|+|.. ..+++.....++.+|.+.....-..-.. +....++++
T Consensus 155 TIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L---~FdP~CisY 230 (1081)
T KOG1538|consen 155 TISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRAL---NFDPCCISY 230 (1081)
T ss_pred eEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccC---CCCchhhee
Confidence 99988644 33322333 356799999999953 5788888888899998865433322111 335678899
Q ss_pred ecCCeEEEEEecCCcEEEEEec
Q 019482 297 CPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 297 ~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
.++|.+++.|+.|+.++++.-+
T Consensus 231 f~NGEy~LiGGsdk~L~~fTR~ 252 (1081)
T KOG1538|consen 231 FTNGEYILLGGSDKQLSLFTRD 252 (1081)
T ss_pred ccCCcEEEEccCCCceEEEeec
Confidence 9999999999999999888654
No 195
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=6.2e-18 Score=132.04 Aligned_cols=289 Identities=16% Similarity=0.181 Sum_probs=183.6
Q ss_pred eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCC-CCeEEEEecCC
Q 019482 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCSTTNG 85 (340)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~ 85 (340)
+.-++|++.-. .+++ +..|..|++|+-..+.. ..+. ......|++++|-|. +..|+.|+..|
T Consensus 101 lr~~aWhqH~~--~fav-------a~nddvVriy~ksst~p-----t~Lk---s~sQrnvtclawRPlsaselavgCr~g 163 (445)
T KOG2139|consen 101 LRGVAWHQHII--AFAV-------ATNDDVVRIYDKSSTCP-----TKLK---SVSQRNVTCLAWRPLSASELAVGCRAG 163 (445)
T ss_pred eeeEeechhhh--hhhh-------hccCcEEEEeccCCCCC-----ceec---chhhcceeEEEeccCCcceeeeeecce
Confidence 45678998322 2333 44677799997653211 1111 123567999999994 46788888888
Q ss_pred CEEEEEecCceeeeee----ccccCCCC--CCCCCeEEEEEecCCCeEEEccC-CCcEEEEeCCCCceeeccccCcccee
Q 019482 86 GCKLFEVYGGATDINL----LAKKMPPL--QDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIILDEPKAHKSVL 158 (340)
Q Consensus 86 ~i~iw~~~~~~~~~~~----~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~i~ 158 (340)
|.+|........... .....+.+ +...+|++++|.+||..+++++. |..|.|||..++..+.-.....+.+.
T Consensus 164 -IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~s 242 (445)
T KOG2139|consen 164 -ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFS 242 (445)
T ss_pred -eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCcee
Confidence 999987643221111 11111111 23478999999999999998875 57899999999887765545556889
Q ss_pred EEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC----
Q 019482 159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW---- 234 (340)
Q Consensus 159 ~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~---- 234 (340)
-+.|+||+.+|+.+.-|+..++|+..+.......... .+.|....|+|+|+.++ ++.+... ++|.+...
T Consensus 243 lLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLL----f~~sgsp--~lysl~f~~~~~ 315 (445)
T KOG2139|consen 243 LLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLL----FACSGSP--RLYSLTFDGEDS 315 (445)
T ss_pred eEEEcCCCCEEEEecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEE----EEEcCCc--eEEEEeecCCCc
Confidence 9999999999999999999999965543332233222 34799999999999743 2222222 22222110
Q ss_pred --------cE---Eee---------eeccCCCeeEEEECCCCCEEEEeeCC--------CcEEEEeccCceEeeccccc-
Q 019482 235 --------NK---IGH---------KRLLRKPASVLSISLDGKYLAMGSKD--------GDICVVDVKKMEINHWSKRL- 285 (340)
Q Consensus 235 --------~~---~~~---------~~~~~~~i~~~~~s~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~- 285 (340)
+. +.. .+...+++.+++|.|.|.+|++.-.. ..|.+||.+..-+.....-+
T Consensus 316 ~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~ 395 (445)
T KOG2139|consen 316 VFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGM 395 (445)
T ss_pred cccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEeccc
Confidence 00 000 01124678899999999999997553 34777887665443332111
Q ss_pred ccccceeeEEEec---CCeEEEEEecCCcEEEEEecCC
Q 019482 286 HLGTSIALVEFCP---TQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 286 ~~~~~i~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
..+.+..-+.|+| ++.+|..+=..|.+.-|.+...
T Consensus 396 i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f~ 433 (445)
T KOG2139|consen 396 IGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTFQ 433 (445)
T ss_pred ccCCCCceEEeeecccCCcEEEEEeccCceEeeeeEEE
Confidence 1122355666766 5677777767788887777543
No 196
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.84 E-value=3.2e-17 Score=137.02 Aligned_cols=246 Identities=12% Similarity=0.139 Sum_probs=155.3
Q ss_pred eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec-C
Q 019482 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-N 84 (340)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-d 84 (340)
....++++|+ .+++..+.. .++.|.+|+++.+. .+. ..... .....+..++|+|+++++++++. +
T Consensus 36 ~~~~l~~spd---~~~lyv~~~-----~~~~i~~~~~~~~g-~l~----~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~ 101 (330)
T PRK11028 36 QVQPMVISPD---KRHLYVGVR-----PEFRVLSYRIADDG-ALT----FAAES-PLPGSPTHISTDHQGRFLFSASYNA 101 (330)
T ss_pred CCccEEECCC---CCEEEEEEC-----CCCcEEEEEECCCC-ceE----Eeeee-cCCCCceEEEECCCCCEEEEEEcCC
Confidence 3556777774 344443332 35668889987322 111 11111 12335778999999998888764 6
Q ss_pred CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEc-cCCCcEEEEeCCCCceeec-----c-ccCccce
Q 019482 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIILD-----E-PKAHKSV 157 (340)
Q Consensus 85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~-----~-~~~~~~i 157 (340)
+.|.+|+++.......... ...+...+.+++++|++++++++ ..++.|.+||+.+...+.. . .......
T Consensus 102 ~~v~v~~~~~~g~~~~~~~----~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p 177 (330)
T PRK11028 102 NCVSVSPLDKDGIPVAPIQ----IIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGP 177 (330)
T ss_pred CeEEEEEECCCCCCCCcee----eccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCC
Confidence 8899999974322111111 11223456788999999988654 4568999999976332211 0 0112346
Q ss_pred eEEEecCCCCeEEEeeC-CCeEEEEEccC--Ce--eEEEeecC-----CCCceeeEEEccCCCcceEEEEEecCCcceEE
Q 019482 158 LDMDFSLDSEFLATTST-DGSARIWKTED--GV--AWTFLTRN-----SDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227 (340)
Q Consensus 158 ~~~~~~~~~~~l~~~~~-d~~v~iwd~~~--~~--~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~ 227 (340)
..+.|+|++++++++.. +++|.+|+++. ++ .+..+... .......+.++|+++++ .++...++.|.
T Consensus 178 ~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l----yv~~~~~~~I~ 253 (330)
T PRK11028 178 RHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL----YACDRTASLIS 253 (330)
T ss_pred ceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE----EEecCCCCeEE
Confidence 78999999999888775 89999999973 22 23333211 11123358899999973 23335578999
Q ss_pred EEECCCCc----EEeeeeccCCCeeEEEECCCCCEEEEeeC-CCcEEEEecc
Q 019482 228 VYDISTWN----KIGHKRLLRKPASVLSISLDGKYLAMGSK-DGDICVVDVK 274 (340)
Q Consensus 228 i~d~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~ 274 (340)
+|++.... .+..... ......+.++|+|++|++++. ++.|.+|++.
T Consensus 254 v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 254 VFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 99986543 1222222 234567899999999998876 8899999874
No 197
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.83 E-value=1.7e-17 Score=127.40 Aligned_cols=241 Identities=14% Similarity=0.166 Sum_probs=171.1
Q ss_pred eeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEE-ccCC------CcEEE
Q 019482 66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVD------GHLRI 138 (340)
Q Consensus 66 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d------g~i~~ 138 (340)
...++|+.|..-+++|..+| .+||+.+.-+....... +.+.+.-+...-..++|+. |+.+ ..|.|
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~-------~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviI 79 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQF-------IDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVII 79 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhcc-------ccCchhhhhHhhhhceEEEecCCCCCCCCCceEEE
Confidence 45599999999999999999 99999876322111100 1111111111112334443 3322 46999
Q ss_pred EeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEcc-CCeeEEEeecCCCCceeeEEEccCCCcceEEEE
Q 019482 139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT 217 (340)
Q Consensus 139 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 217 (340)
||=....++..+ ....+|.++.+.++ .|++.- ++.|++|... +.+.+..+.... .+---++..|.....++ .
T Consensus 80 WDD~k~~~i~el-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~-NPkGlC~~~~~~~k~~L--a 152 (346)
T KOG2111|consen 80 WDDLKERCIIEL-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRS-NPKGLCSLCPTSNKSLL--A 152 (346)
T ss_pred EecccCcEEEEE-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeeccc-CCCceEeecCCCCceEE--E
Confidence 994444444433 55678999999865 455554 6899999987 555555554322 12224455555443332 3
Q ss_pred EecCCcceEEEEECCCCcE--EeeeeccCCCeeEEEECCCCCEEEEeeCCCc-EEEEeccCceEeecccccccccceeeE
Q 019482 218 VQRGDKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDGD-ICVVDVKKMEINHWSKRLHLGTSIALV 294 (340)
Q Consensus 218 ~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~i~~~ 294 (340)
.-+-.-|+|.+-|+...+. ...+..|...|.+++++.+|..+|+++..|+ |||||..++..++.+..+.....|.++
T Consensus 153 fPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i 232 (346)
T KOG2111|consen 153 FPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI 232 (346)
T ss_pred cCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence 4555679999999987665 4678899999999999999999999999996 899999999999998877766789999
Q ss_pred EEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 295 EFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 295 ~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
+|||+..+|+++|+-|+++|+.+....
T Consensus 233 aFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 233 AFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 999999999999999999999998654
No 198
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3.4e-19 Score=141.54 Aligned_cols=195 Identities=20% Similarity=0.201 Sum_probs=150.8
Q ss_pred eEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCce
Q 019482 67 MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI 146 (340)
Q Consensus 67 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 146 (340)
.+++|+++|..+++++.||.+|+|+..+........ .|...|.++.|+|||++|++.+.| ..+||+.+++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~-------~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI-------AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH-------hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch
Confidence 468999999999999999999999976655443332 378999999999999999999999 899999999976
Q ss_pred eeccccC--ccceeEEEecCCC---Ce--EEEeeCCCeEEEEEccCCee-----EEEeecCCCCceeeEEEccCCCcceE
Q 019482 147 ILDEPKA--HKSVLDMDFSLDS---EF--LATTSTDGSARIWKTEDGVA-----WTFLTRNSDEKIELCRFSKDGTKPFL 214 (340)
Q Consensus 147 ~~~~~~~--~~~i~~~~~~~~~---~~--l~~~~~d~~v~iwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (340)
+...... ......+.|+.|+ .+ ++....-+.|+.|++..... ..+.. ...+.|.+++.+++|+.
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~dGkf--- 295 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDDGKF--- 295 (398)
T ss_pred hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCCCcE---
Confidence 6555422 2357778888776 33 33333456677776643211 11111 12346999999999997
Q ss_pred EEEEecCCcceEEEEECCCCcEEeee-eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC
Q 019482 215 FCTVQRGDKALLAVYDISTWNKIGHK-RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (340)
Q Consensus 215 ~~~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 275 (340)
++.++.||.|.+++..+.+.++.. +.|..-|+.+.|+||.+++++.+.|....+..+.-
T Consensus 296 --~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 296 --LALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred --EEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 788999999999999998876554 56788999999999999999999999999887754
No 199
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.82 E-value=1e-16 Score=133.85 Aligned_cols=268 Identities=13% Similarity=0.141 Sum_probs=169.8
Q ss_pred CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCC
Q 019482 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA 112 (340)
Q Consensus 33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 112 (340)
.++.+.+.+.+ +......+......-..+.|+|||+++++++.||.|.++|+.+.+...++.. .
T Consensus 14 ~~~~v~viD~~--------t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~--------G 77 (369)
T PF02239_consen 14 GSGSVAVIDGA--------TNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV--------G 77 (369)
T ss_dssp GGTEEEEEETT--------T-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE---------S
T ss_pred CCCEEEEEECC--------CCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec--------C
Confidence 45668887765 4444455655444344578999999999999999999999999987766643 2
Q ss_pred CCeEEEEEecCCCeEEEcc-CCCcEEEEeCCCCceeeccccC-------ccceeEEEecCCCCeEEEeeC-CCeEEEEEc
Q 019482 113 GPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDEPKA-------HKSVLDMDFSLDSEFLATTST-DGSARIWKT 183 (340)
Q Consensus 113 ~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~ 183 (340)
....++++++||++++++. ..+.+.++|.++.+.+..+... ...+..+..+|....++..-. .+.|.+.|.
T Consensus 78 ~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy 157 (369)
T PF02239_consen 78 GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY 157 (369)
T ss_dssp SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence 4568899999999998775 5799999999999887765432 235677888888876655554 488888887
Q ss_pred cCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEE--------------------------
Q 019482 184 EDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI-------------------------- 237 (340)
Q Consensus 184 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~-------------------------- 237 (340)
...+.+..-............|+|+++++ +++....+.|.++|..+++.+
T Consensus 158 ~d~~~~~~~~i~~g~~~~D~~~dpdgry~----~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw 233 (369)
T PF02239_consen 158 SDPKNLKVTTIKVGRFPHDGGFDPDGRYF----LVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVW 233 (369)
T ss_dssp TTSSCEEEEEEE--TTEEEEEE-TTSSEE----EEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEE
T ss_pred ccccccceeeecccccccccccCccccee----eecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEE
Confidence 76654433222334567889999999873 233344556777776654332
Q ss_pred -----------------------------eeeeccCCCeeEEEECCCCCEEEEe----eCCCcEEEEeccCceEeecccc
Q 019482 238 -----------------------------GHKRLLRKPASVLSISLDGKYLAMG----SKDGDICVVDVKKMEINHWSKR 284 (340)
Q Consensus 238 -----------------------------~~~~~~~~~i~~~~~s~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~ 284 (340)
+.+.....+ ..+..+|+++++.+. ...+.|.++|.++.+....+..
T Consensus 234 ~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~ 312 (369)
T PF02239_consen 234 ATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP 312 (369)
T ss_dssp EEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH
T ss_pred eeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec
Confidence 222222223 456779999999988 4458999999999988777653
Q ss_pred cccccceeeEEEecCCeEEEEEecC--CcEEEEEecCCCC
Q 019482 285 LHLGTSIALVEFCPTQRVVLTASKE--WGAMITKLTVPAD 322 (340)
Q Consensus 285 ~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~ 322 (340)
.. +..+..+.|++||+.+..+..+ +.|.|+|-..-+.
T Consensus 313 ~~-~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 313 GP-GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKE 351 (369)
T ss_dssp HH-T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred cC-CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence 33 3459999999999866555544 3699999765443
No 200
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=4.8e-17 Score=140.53 Aligned_cols=294 Identities=13% Similarity=0.058 Sum_probs=200.3
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCC-CCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEE
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDP-KTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 81 (340)
+..+++|.+++| ..+++|.|. .+|+|.+|.--. .. .......+.-|.+.|++++|+++|.+|++|
T Consensus 204 Htf~~t~~~~sp---n~~~~Aa~d------~dGrI~vw~d~~~~~-----~~~t~t~lHWH~~~V~~L~fS~~G~~LlSG 269 (792)
T KOG1963|consen 204 HTFNITCVALSP---NERYLAAGD------SDGRILVWRDFGSSD-----DSETCTLLHWHHDEVNSLSFSSDGAYLLSG 269 (792)
T ss_pred hcccceeEEecc---ccceEEEec------cCCcEEEEecccccc-----ccccceEEEecccccceeEEecCCceEeec
Confidence 455689999999 445677666 567799996432 11 222335577899999999999999999999
Q ss_pred ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeecccc---------
Q 019482 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK--------- 152 (340)
Q Consensus 82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--------- 152 (340)
+..+.+.+|.+.+++ .+++. +-.++|..+.++||+.+.+....|..|.+....+.+....+.+
T Consensus 270 G~E~VLv~Wq~~T~~--kqfLP------RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k 341 (792)
T KOG1963|consen 270 GREGVLVLWQLETGK--KQFLP------RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTK 341 (792)
T ss_pred ccceEEEEEeecCCC--ccccc------ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccc
Confidence 999999999999887 34433 2458999999999999999999999999998765443322211
Q ss_pred --CccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeec----CCC------CceeeEEEccCCCcceEEEE---
Q 019482 153 --AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR----NSD------EKIELCRFSKDGTKPFLFCT--- 217 (340)
Q Consensus 153 --~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~----~~~------~~v~~~~~~~~~~~~~~~~~--- 217 (340)
..+-.+.++++|.-+.++-.+..+.|.+||+-+.+.+..+.. ..+ -.++.++.+..|.++...-.
T Consensus 342 ~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d 421 (792)
T KOG1963|consen 342 TRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARID 421 (792)
T ss_pred ccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeeh
Confidence 122367788999777788888999999999988777665541 111 13556666666664211100
Q ss_pred --EecCCcceEEEEECCCCcE----Ee-eeeccCCCeeEEEECC-C-CCEEEEeeCCCcEEEEeccCceEee--------
Q 019482 218 --VQRGDKALLAVYDISTWNK----IG-HKRLLRKPASVLSISL-D-GKYLAMGSKDGDICVVDVKKMEINH-------- 280 (340)
Q Consensus 218 --~~~~~d~~i~i~d~~~~~~----~~-~~~~~~~~i~~~~~s~-~-~~~l~~~~~dg~i~i~d~~~~~~~~-------- 280 (340)
......-.+++|-...... .. ....|+..+...++.+ . ...+++++.||.+++|-+...+.+.
T Consensus 422 ~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c 501 (792)
T KOG1963|consen 422 KFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTC 501 (792)
T ss_pred hhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEE
Confidence 0011234678887654332 11 1234554444444433 2 3378999999999999884432211
Q ss_pred -cccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482 281 -WSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 281 -~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
.+...| ..++++++|+.||. +++.+.|+.|.+|+...+
T Consensus 502 ~~i~sy~-k~~i~a~~fs~dGs-lla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 502 KAIGSYH-KTPITALCFSQDGS-LLAVSFDDTITIWDYDTK 540 (792)
T ss_pred eeeeccc-cCcccchhhcCCCc-EEEEecCCEEEEecCCCh
Confidence 111223 57899999999996 555667889999999874
No 201
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=9.9e-19 Score=138.21 Aligned_cols=195 Identities=14% Similarity=0.195 Sum_probs=146.0
Q ss_pred CCCeeEEEEcCCCC-eEEEEecCCCEEEEEecCceeeee--eccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEE
Q 019482 63 EGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDIN--LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (340)
Q Consensus 63 ~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 139 (340)
..+|..+.|.++.. .+++|+.|..|++|.+........ ...-......|...|+++.|+|+|+.|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 35799999998766 999999999999999976543321 111111223588999999999999999999999999999
Q ss_pred eCC--------C--------CceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeE
Q 019482 140 HWP--------S--------LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELC 203 (340)
Q Consensus 140 d~~--------~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~ 203 (340)
-.. + ........+|.+.|..++|+|+++++++++.|.++++||+..|+....+. .|...+..+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~-dh~~yvqgv 171 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD-DHEHYVQGV 171 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc-cccccccee
Confidence 765 2 11223345677789999999999999999999999999999999988776 455689999
Q ss_pred EEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee-------------------ccC----CCeeEEEECCCCCEEE
Q 019482 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-------------------LLR----KPASVLSISLDGKYLA 260 (340)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-------------------~~~----~~i~~~~~s~~~~~l~ 260 (340)
+|.|-+++ +++-+.|...+.+.+...+.+.... .|+ .-...++|+|+|.+++
T Consensus 172 awDpl~qy-----v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llv 246 (434)
T KOG1009|consen 172 AWDPLNQY-----VASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLV 246 (434)
T ss_pred ecchhhhh-----hhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEE
Confidence 99999987 6666777766666655433221111 011 1234678999999998
Q ss_pred Eee
Q 019482 261 MGS 263 (340)
Q Consensus 261 ~~~ 263 (340)
+..
T Consensus 247 tPa 249 (434)
T KOG1009|consen 247 TPA 249 (434)
T ss_pred ccc
Confidence 864
No 202
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.81 E-value=4.2e-16 Score=122.19 Aligned_cols=278 Identities=15% Similarity=0.150 Sum_probs=194.2
Q ss_pred eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC-
Q 019482 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN- 84 (340)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d- 84 (340)
.+....|+. +..++..|...+ .++|+.++....... ....-.|.-+-|+ ..++|..+.+
T Consensus 7 ti~~~~~Nq---d~~~lsvGs~~G-------yk~~~~~~~~k~~~~--------~~~~~~IvEmLFS--SSLvaiV~~~q 66 (391)
T KOG2110|consen 7 TINFIGFNQ---DSTLLSVGSKDG-------YKIFSCSPFEKCFSK--------DTEGVSIVEMLFS--SSLVAIVSIKQ 66 (391)
T ss_pred ceeeeeecc---ceeEEEccCCCc-------eeEEecCchHHhhcc--------cCCCeEEEEeecc--cceeEEEecCC
Confidence 455666776 556777666544 788888755431110 0011224455565 4456655544
Q ss_pred -CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccC---ccceeEE
Q 019482 85 -GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA---HKSVLDM 160 (340)
Q Consensus 85 -~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---~~~i~~~ 160 (340)
+.+++.+++....+..+. -..+|.++.++.+ .|+++-++ .|+|||+++.+.+..+..- ...+.++
T Consensus 67 pr~Lkv~~~Kk~~~ICe~~--------fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~Al 135 (391)
T KOG2110|consen 67 PRKLKVVHFKKKTTICEIF--------FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCAL 135 (391)
T ss_pred CceEEEEEcccCceEEEEe--------cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEee
Confidence 458899988776555443 3368899999754 56666554 4999999999887766543 3357777
Q ss_pred EecCCCCeEEEee--CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcce-EEEEECCCCcEE
Q 019482 161 DFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL-LAVYDISTWNKI 237 (340)
Q Consensus 161 ~~~~~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~-i~i~d~~~~~~~ 237 (340)
.+++.+.+++.-+ ..|.|.+||..+-+++..+. .|++.+.+++|+++|.. ++++++.|+ ||++.+.+++.+
T Consensus 136 S~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~l-----lATASeKGTVIRVf~v~~G~kl 209 (391)
T KOG2110|consen 136 SPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN-AHKGPLAALAFSPDGTL-----LATASEKGTVIRVFSVPEGQKL 209 (391)
T ss_pred ccCCCCceEEecCCCCCceEEEEEcccceeeeEEE-ecCCceeEEEECCCCCE-----EEEeccCceEEEEEEcCCccEe
Confidence 7777777888643 46899999999999988887 56789999999999997 788887775 799999999999
Q ss_pred eeeeccC--CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecc------------------------c--------
Q 019482 238 GHKRLLR--KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS------------------------K-------- 283 (340)
Q Consensus 238 ~~~~~~~--~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------------------~-------- 283 (340)
.+++... ..|.+++|+|++++|++.+..++|++|.+........- .
T Consensus 210 ~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~ 289 (391)
T KOG2110|consen 210 YEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRK 289 (391)
T ss_pred eeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccc
Confidence 8887654 46789999999999999999999999988653210000 0
Q ss_pred --c--cccccceeeEEEe--cCCeEEEEEecCCcEEEEEecCC
Q 019482 284 --R--LHLGTSIALVEFC--PTQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 284 --~--~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
. ......-..+.+. +....+..++.||.++.|.++..
T Consensus 290 FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 290 FATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred eeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 0 0001111334444 46788999999999999999875
No 203
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.81 E-value=1.5e-19 Score=145.23 Aligned_cols=235 Identities=12% Similarity=0.117 Sum_probs=194.1
Q ss_pred CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 142 (340)
+...+.+.++.+|++|+.|+..|.+-.+|..+......+. -...|.++.|..+.+++|++ ....++||| .
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~--------v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~ 198 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN--------VMETVRDVTFLHNEQFFAVA-QKKYVYVYD-N 198 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee--------hhhhhhhhhhhcchHHHHhh-hhceEEEec-C
Confidence 4457789999999999999999999999999888765553 23578899999888777776 567899999 5
Q ss_pred CCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCC
Q 019482 143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD 222 (340)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 222 (340)
.|..+..+.. +..|..+.|-|..-+|++++..|.++.-|+.+|+.+..+.... +.+..++-+|-+.. +-.|..
T Consensus 199 ~GtElHClk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~-G~~~vm~qNP~NaV-----ih~Ghs 271 (545)
T KOG1272|consen 199 NGTELHCLKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA-GRTDVMKQNPYNAV-----IHLGHS 271 (545)
T ss_pred CCcEEeehhh-cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC-CccchhhcCCccce-----EEEcCC
Confidence 5676666644 4578999999999899999999999999999999998887543 56778888887764 678889
Q ss_pred cceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeE
Q 019482 223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRV 302 (340)
Q Consensus 223 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 302 (340)
.|+|.+|.....+++..+-.|.++|.++++.++|+|+++.+.|..++|||++....+..+... .+...+++|..|
T Consensus 272 nGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp---~~a~~ls~Sqkg-- 346 (545)
T KOG1272|consen 272 NGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP---HPASNLSLSQKG-- 346 (545)
T ss_pred CceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecC---CCcccccccccc--
Confidence 999999999999999999999999999999999999999999999999999998877665542 368888998766
Q ss_pred EEEEecCCcEEEEEecC
Q 019482 303 VLTASKEWGAMITKLTV 319 (340)
Q Consensus 303 l~~~~~dg~i~iw~~~~ 319 (340)
++++|....+.||.=..
T Consensus 347 lLA~~~G~~v~iw~d~~ 363 (545)
T KOG1272|consen 347 LLALSYGDHVQIWKDAL 363 (545)
T ss_pred ceeeecCCeeeeehhhh
Confidence 33444445789996443
No 204
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=4.5e-19 Score=145.46 Aligned_cols=218 Identities=10% Similarity=0.065 Sum_probs=163.0
Q ss_pred eeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec--CCCeEEEccC
Q 019482 55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGV 132 (340)
Q Consensus 55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~ 132 (340)
.+.+|.||++.|++++|+.+|.+|++|+.|-.+.|||....+....+.+ .|...|.+++|-| +.+.+++|..
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T------gHtaNIFsvKFvP~tnnriv~sgAg 115 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIST------GHTANIFSVKFVPYTNNRIVLSGAG 115 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeec------ccccceeEEeeeccCCCeEEEeccC
Confidence 4567899999999999999999999999999999999987666555543 4889999999999 5568999999
Q ss_pred CCcEEEEeCCCC----------ceeeccccCccceeEEEecCCC-CeEEEeeCCCeEEEEEccCCeeEE-------Eeec
Q 019482 133 DGHLRIMHWPSL----------RIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWT-------FLTR 194 (340)
Q Consensus 133 dg~i~~~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~-------~~~~ 194 (340)
|..|+++|+... +.......|...|..++-.|++ +.+.+++.||+++-+|++....-. .+..
T Consensus 116 Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~n 195 (758)
T KOG1310|consen 116 DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVN 195 (758)
T ss_pred cceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHH
Confidence 999999999742 2233445667788889999988 789999999999999998632211 1100
Q ss_pred --CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC--------c----------EEeeee-cc----C-----
Q 019482 195 --NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW--------N----------KIGHKR-LL----R----- 244 (340)
Q Consensus 195 --~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~--------~----------~~~~~~-~~----~----- 244 (340)
..--...++..+|...+. ++.|+.|-..++||.+.. . ++..+. .| .
T Consensus 196 y~~~lielk~ltisp~rp~~----laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~ 271 (758)
T KOG1310|consen 196 YNPQLIELKCLTISPSRPYY----LAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDR 271 (758)
T ss_pred hchhhheeeeeeecCCCCce----EEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccccc
Confidence 011246789999988863 788999999999995421 1 111111 11 0
Q ss_pred --CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecc
Q 019482 245 --KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS 282 (340)
Q Consensus 245 --~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 282 (340)
..++-++|+|+|..|++.-....|+++|+..++....+
T Consensus 272 ~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 272 YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 12566889999988887766668999999887655443
No 205
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1e-17 Score=129.75 Aligned_cols=232 Identities=12% Similarity=0.145 Sum_probs=169.0
Q ss_pred CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec--CCCeEEEccCCCcEEEEeCCCCceeecc--c
Q 019482 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDE--P 151 (340)
Q Consensus 76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~--~ 151 (340)
..+|++..+|.|++||..+++....+.. +...+..++|.. .+..+.+++.||+|++||++.......+ .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~-------~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~ 113 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKG-------PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT 113 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecC-------CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc
Confidence 5788899999999999999877666654 445667788876 4678999999999999999976654333 2
Q ss_pred cCc-cceeEEEecCCCCeEEEee----CCCeEEEEEccCCee-EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcce
Q 019482 152 KAH-KSVLDMDFSLDSEFLATTS----TDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225 (340)
Q Consensus 152 ~~~-~~i~~~~~~~~~~~l~~~~----~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~ 225 (340)
++. .+..+++.+..++.+++|. .|-.|.+||+|..+. +..+...|...|++++|+|....+ +++++.||.
T Consensus 114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnl----LlSGSvDGL 189 (376)
T KOG1188|consen 114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNL----LLSGSVDGL 189 (376)
T ss_pred CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCe----EEeecccce
Confidence 333 3667777776778888876 467899999998777 777777777889999999998764 799999999
Q ss_pred EEEEECCCCcE---EeeeeccCCCeeEEEECCCC-CEEEEeeCCCcEEEEeccCceEeecccccccc----------cce
Q 019482 226 LAVYDISTWNK---IGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKRLHLG----------TSI 291 (340)
Q Consensus 226 i~i~d~~~~~~---~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------~~i 291 (340)
+.+||+..... +.....+...|..+.|..++ +.|.+-+..+...+|+++.+.....+...... ..+
T Consensus 190 vnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~ 269 (376)
T KOG1188|consen 190 VNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYV 269 (376)
T ss_pred EEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhe
Confidence 99999986542 22334456679999998876 56888888999999999988765544322110 122
Q ss_pred eeEEEecCCeEEEEEec-CCcEEEEEec
Q 019482 292 ALVEFCPTQRVVLTASK-EWGAMITKLT 318 (340)
Q Consensus 292 ~~~~~~~~~~~l~~~~~-dg~i~iw~~~ 318 (340)
.......++...+.++. -+...++-+.
T Consensus 270 I~~~~~~~~~~~~l~g~~~n~~~~~~~~ 297 (376)
T KOG1188|consen 270 INEHSPGDKDTCALAGTDSNKGTIFPLV 297 (376)
T ss_pred eecccCCCcceEEEeccccCceeEEEee
Confidence 22222224455555555 5677777665
No 206
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=1.1e-18 Score=142.93 Aligned_cols=234 Identities=17% Similarity=0.180 Sum_probs=160.9
Q ss_pred CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccc-cCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEe
Q 019482 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAK-KMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH 140 (340)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d 140 (340)
|...+.++.|+.....+.+++.+..+.-||+............ ..++..|..+ .+..=-.....|+.++.||.+.+.+
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~-rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGG-RSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred cceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccc-cccCCCCCcceEEEEcCCceEEEec
Confidence 5666779999877666665555554444454433322111111 1111112100 0000011234788888999999987
Q ss_pred CCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEec
Q 019482 141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR 220 (340)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 220 (340)
+.++.......|.+.+.+-.|+|||.-|++++.||.|++|. ++|....++. ....+|+|++|.|+...+ +++
T Consensus 92 -k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~-Q~~~~v~c~~W~p~S~~v----l~c- 163 (737)
T KOG1524|consen 92 -KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVV-QNEESIRCARWAPNSNSI----VFC- 163 (737)
T ss_pred -ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHh-hcCceeEEEEECCCCCce----EEe-
Confidence 55666666777888999999999999999999999999998 4565544443 345689999999999863 232
Q ss_pred CCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCC
Q 019482 221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300 (340)
Q Consensus 221 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 300 (340)
..+.+.+=.+.....+-..+.|++-|.++.|+|..+.+++|++|-..++||......... ..| ..+|++++|+|+
T Consensus 164 -~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S--~~~-ey~ITSva~npd- 238 (737)
T KOG1524|consen 164 -QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTS--AAE-EYAITSVAFNPE- 238 (737)
T ss_pred -cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccC--Chh-ccceeeeeeccc-
Confidence 244566666666666667899999999999999999999999999999999765444332 344 579999999999
Q ss_pred eEEEEEecC
Q 019482 301 RVVLTASKE 309 (340)
Q Consensus 301 ~~l~~~~~d 309 (340)
..++.+|..
T Consensus 239 ~~~~v~S~n 247 (737)
T KOG1524|consen 239 KDYLLWSYN 247 (737)
T ss_pred cceeeeeee
Confidence 667777654
No 207
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=2.2e-16 Score=135.77 Aligned_cols=222 Identities=19% Similarity=0.164 Sum_probs=146.0
Q ss_pred EecCCCCeeEEEEcCCCCeEEEEec---CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEc-cCCC
Q 019482 59 FDESEGDPMTIAVNPSGDDFVCSTT---NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDG 134 (340)
Q Consensus 59 ~~~h~~~v~~~~~~~~~~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg 134 (340)
+..+...+...+|+|||+.|+..+. +..+.+|++.+++... +.. ..+.+..+.|+|||+.|+.. +.+|
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~-------~~~~~~~~~~SPDG~~La~~~~~~g 265 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VAS-------FPRHNGAPAFSPDGSKLAFALSKTG 265 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccC-------CCCCcCCeEECCCCCEEEEEEcCCC
Confidence 3446678999999999999986543 3468999988765322 111 12334568999999988764 4444
Q ss_pred --cEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCC-C--eEEEEEccCCeeEEEeecCCCCceeeEEEccCC
Q 019482 135 --HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-G--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209 (340)
Q Consensus 135 --~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (340)
.|++||+++++... +..+...+....|+|||+.|+..+.+ + .|+++|+.+++.. .+.. .........|+|||
T Consensus 266 ~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~-~~~~~~~~~~SpDG 342 (429)
T PRK03629 266 SLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW-EGSQNQDADVSSDG 342 (429)
T ss_pred CcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec-CCCCccCEEECCCC
Confidence 58899998876543 33444567889999999988877654 4 4555566665443 3332 22345678999999
Q ss_pred CcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCc---EEEEeccCceEeecccccc
Q 019482 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGD---ICVVDVKKMEINHWSKRLH 286 (340)
Q Consensus 210 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~---i~i~d~~~~~~~~~~~~~~ 286 (340)
+.+++ .........|.+||+.+++.. .+.. ........|+|||++|+.++.++. +.++++..... ..+. .+
T Consensus 343 ~~Ia~--~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~-~~l~-~~ 416 (429)
T PRK03629 343 KFMVM--VSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLP-AT 416 (429)
T ss_pred CEEEE--EEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCe-EECc-cC
Confidence 97422 111223456899999887643 2322 223446789999999999887764 67777754433 3332 34
Q ss_pred cccceeeEEEec
Q 019482 287 LGTSIALVEFCP 298 (340)
Q Consensus 287 ~~~~i~~~~~~~ 298 (340)
...+...+|+|
T Consensus 417 -~~~~~~p~Wsp 427 (429)
T PRK03629 417 -DGQVKFPAWSP 427 (429)
T ss_pred -CCCcCCcccCC
Confidence 45788889987
No 208
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.79 E-value=3.1e-17 Score=146.38 Aligned_cols=270 Identities=11% Similarity=0.056 Sum_probs=185.4
Q ss_pred CcccCCeeeEEEecCCCCeeEEEEcCCC-CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCe
Q 019482 48 SVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSR 126 (340)
Q Consensus 48 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 126 (340)
.....+.....+..|...|..++.++.. .++++|+.||+|++|+...-...................+.++...+.++.
T Consensus 1033 gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1033 GWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 3334566777888999999999988754 899999999999999997543221111000101114578899999999999
Q ss_pred EEEccCCCcEEEEeCCCCc-------eeeccccCc-cc-eeEEEecC-CCC-eEEEeeCCCeEEEEEccCCeeEEEeec-
Q 019482 127 FAAGGVDGHLRIMHWPSLR-------IILDEPKAH-KS-VLDMDFSL-DSE-FLATTSTDGSARIWKTEDGVAWTFLTR- 194 (340)
Q Consensus 127 l~~~~~dg~i~~~d~~~~~-------~~~~~~~~~-~~-i~~~~~~~-~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~- 194 (340)
+|+++.||.|++.+++..+ +......+. +. +..-+|.. .+. .++.+..-+.|..||++.......++.
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 9999999999999987521 111111111 22 33334433 333 678888889999999998766555442
Q ss_pred CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee-ccCCCeeEEEECCC---CCEEEEee--CCCcE
Q 019482 195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLD---GKYLAMGS--KDGDI 268 (340)
Q Consensus 195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~---~~~l~~~~--~dg~i 268 (340)
...+.|++++.+|.+.+ ++.|+..|.+.+||+|-+.++.... .+..++..+..+|- ....++++ ..+.|
T Consensus 1193 ~~hG~vTSi~idp~~~W-----lviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nev 1267 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNW-----LVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEV 1267 (1431)
T ss_pred ccccceeEEEecCCceE-----EEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCce
Confidence 22367999999999997 7899999999999999888776543 33467888877763 34555544 46789
Q ss_pred EEEeccCceEeecccccc-----------------cccceeeEEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482 269 CVVDVKKMEINHWSKRLH-----------------LGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD 322 (340)
Q Consensus 269 ~i~d~~~~~~~~~~~~~~-----------------~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (340)
.+|++.++.....+.... ..-......+..-+..+.+|+.|..|+.||...|..
T Consensus 1268 s~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1268 STWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred eeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 999999876554432220 001222334444457899999999999999987753
No 209
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=6.2e-17 Score=142.51 Aligned_cols=246 Identities=17% Similarity=0.154 Sum_probs=180.0
Q ss_pred CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec--CCCeEEEccCCCcEEEEeCC
Q 019482 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWP 142 (340)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~ 142 (340)
....+.|+|-...++++...-.|++||.+.++....+.... .....|+.+.+-. |..++++|+.||.|+||+--
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~----~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA----FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCC----CCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 46678899988999998877789999999888766554432 2346788888866 45689999999999999632
Q ss_pred -CC----ceeecccc-------CccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccC-C
Q 019482 143 -SL----RIILDEPK-------AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD-G 209 (340)
Q Consensus 143 -~~----~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~ 209 (340)
+. +.+....+ ..+.-.-++|.....+|++++.-..|+|||....+....+....+..++++.-+-. |
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence 21 22211111 11112446787766666666667899999999888888887666666777655543 3
Q ss_pred CcceEEEEEecCCcceEEEEECCCCc---EEeeeeccCCC--eeEEEECCCCC-EEEEeeCCCcEEEEeccCceEeeccc
Q 019482 210 TKPFLFCTVQRGDKALLAVYDISTWN---KIGHKRLLRKP--ASVLSISLDGK-YLAMGSKDGDICVVDVKKMEINHWSK 283 (340)
Q Consensus 210 ~~~~~~~~~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~--i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~ 283 (340)
.. +++|..||.+++||.+... .+...+.|... |..+.+.+.|- .|++|+.||.|++||++.......+.
T Consensus 1222 n~-----i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~ 1296 (1387)
T KOG1517|consen 1222 NI-----IAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT 1296 (1387)
T ss_pred ce-----EEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce
Confidence 44 7888999999999998654 35566777765 99999998764 59999999999999999842222111
Q ss_pred -cccc--ccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482 284 -RLHL--GTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 284 -~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
..|. ++..+++..++....+|+|+. +.|+||++.-.
T Consensus 1297 iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1297 IVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred eeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh
Confidence 1121 335899999999999999998 99999999744
No 210
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.79 E-value=2e-17 Score=135.47 Aligned_cols=243 Identities=16% Similarity=0.207 Sum_probs=171.1
Q ss_pred eeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEE-----ecCCCeEEEccCCCcEEEEe
Q 019482 66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF-----SVDGSRFAAGGVDGHLRIMH 140 (340)
Q Consensus 66 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~dg~i~~~d 140 (340)
+....++-.|++|+..-.+ .+++|+...+......+.+... ......|-.| .|++--++.|-.-|.|.+.|
T Consensus 126 ~~~~~~~~~gd~lcFnvg~-~lyv~~~~g~~~~~~pi~k~~y---~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGR-ELYVYSYRGAADLSKPIDKREY---KGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLID 201 (636)
T ss_pred eeeccccCCCCEEEEecCC-eEEEEEccCcchhccchhhhcc---cCCCCceecccccccCCCCcceEEeeccCceEEec
Confidence 3344444566777655443 3899998864332222221111 1122334444 34566788888889999998
Q ss_pred CCCCceeecccc-----CccceeEEEecC-CCCeEEEeeCCCeEEEEEccC--------------Ce-------------
Q 019482 141 WPSLRIILDEPK-----AHKSVLDMDFSL-DSEFLATTSTDGSARIWKTED--------------GV------------- 187 (340)
Q Consensus 141 ~~~~~~~~~~~~-----~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~--------------~~------------- 187 (340)
....+ +.++.. ....++++.|-| +...++.+-.+|.+++||... +.
T Consensus 202 p~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~r 280 (636)
T KOG2394|consen 202 PINFE-VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTR 280 (636)
T ss_pred chhhH-HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccC
Confidence 76532 222111 124799999999 445677777899999997632 11
Q ss_pred -eEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCC
Q 019482 188 -AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG 266 (340)
Q Consensus 188 -~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 266 (340)
++..+.. ..+.|...+|+|||++ +++.+.|+.++|||..+.+.+..++..-+...|++|||||+||++|++|.
T Consensus 281 NPv~~w~~-~~g~in~f~FS~DG~~-----LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD 354 (636)
T KOG2394|consen 281 NPVARWHI-GEGSINEFAFSPDGKY-----LATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD 354 (636)
T ss_pred CccceeEe-ccccccceeEcCCCce-----EEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc
Confidence 1111111 1246889999999998 89999999999999999887777777778899999999999999999999
Q ss_pred cEEEEeccCceEeecccccccccceeeEEEecC-----------------------------------------------
Q 019482 267 DICVVDVKKMEINHWSKRLHLGTSIALVEFCPT----------------------------------------------- 299 (340)
Q Consensus 267 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~----------------------------------------------- 299 (340)
.|.||.+...+++..- ++| .+.|..++|.|-
T Consensus 355 LVtVwSf~erRVVARG-qGH-kSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~ 432 (636)
T KOG2394|consen 355 LVTVWSFEERRVVARG-QGH-KSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINS 432 (636)
T ss_pred eEEEEEeccceEEEec-ccc-ccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccc
Confidence 9999999999988765 577 579999999830
Q ss_pred -CeEEEEEecCCcEEEEEecCCC
Q 019482 300 -QRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 300 -~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
.-.|.+.+.|-.+.+||+....
T Consensus 433 v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 433 VTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred eEEEeecccccceEEEEecchhh
Confidence 1247788899999999998654
No 211
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.79 E-value=1.3e-17 Score=128.10 Aligned_cols=202 Identities=18% Similarity=0.205 Sum_probs=161.1
Q ss_pred CCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc---eeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCC-e
Q 019482 112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR---IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-V 187 (340)
Q Consensus 112 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-~ 187 (340)
..+|+|.+|++|+..++.+.....|.||.....+ ....+..|...|+.++|+|..+.|++|+.|..-++|....+ +
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 3689999999999999999999999999887554 56677788889999999999999999999999999998433 2
Q ss_pred --eEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE----EeeeeccCCCeeEEEECCCCCEEEE
Q 019482 188 --AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK----IGHKRLLRKPASVLSISLDGKYLAM 261 (340)
Q Consensus 188 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~ 261 (340)
+...+.. .+...+++.|+|.++. +++++....|.+|-+...+. ....+.+...|++++|+|++-++++
T Consensus 90 WkptlvLlR-iNrAAt~V~WsP~enk-----FAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 90 WKPTLVLLR-INRAATCVKWSPKENK-----FAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred eccceeEEE-eccceeeEeecCcCce-----EEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence 3333332 4467999999999987 78888889999888765432 2233445678999999999999999
Q ss_pred eeCCCcEEEEeccC------------------ceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 262 GSKDGDICVVDVKK------------------MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 262 ~~~dg~i~i~d~~~------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
|+.|+..++|..-- |+.+.... ..++.+..+.|+|+|..|+-.+.|..+.+=|-..|.
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 99999999996421 11111111 225689999999999999999999999998887775
No 212
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=5.8e-17 Score=127.80 Aligned_cols=223 Identities=13% Similarity=0.132 Sum_probs=168.1
Q ss_pred CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCe-EEEccCC--CcEEE
Q 019482 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSR-FAAGGVD--GHLRI 138 (340)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d--g~i~~ 138 (340)
....|..+... +| .|++|-.+|.+++|..+.+....... ........+..+.-++...+ +++|+.. ..+.+
T Consensus 104 ~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l----~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lki 177 (412)
T KOG3881|consen 104 GTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKL----IKLATGPGLYDVRQTDTDPYIVATGGKENINELKI 177 (412)
T ss_pred ccccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccc----eeeecCCceeeeccCCCCCceEecCchhcccceee
Confidence 45566666654 33 67788889999999998544211110 01112356677777775554 5558888 78999
Q ss_pred EeCCCCceeeccccCcc---------ceeEEEecCC--CCeEEEeeCCCeEEEEEccCC-eeEEEeecCCCCceeeEEEc
Q 019482 139 MHWPSLRIILDEPKAHK---------SVLDMDFSLD--SEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFS 206 (340)
Q Consensus 139 ~d~~~~~~~~~~~~~~~---------~i~~~~~~~~--~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~v~~~~~~ 206 (340)
||+++.+.+..-..... .++++.|-+. ...|++++.-+.+++||.+.+ +++..+.. ...+++++...
T Consensus 178 wdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~-~E~~is~~~l~ 256 (412)
T KOG3881|consen 178 WDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF-LENPISSTGLT 256 (412)
T ss_pred eecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc-ccCcceeeeec
Confidence 99998876655433221 4678889886 788999999999999999865 45555553 35689999999
Q ss_pred cCCCcceEEEEEecCCcceEEEEECCCCcEEee-eeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc
Q 019482 207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285 (340)
Q Consensus 207 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 285 (340)
|.++. ++++..-+.+..||++.++.... +.+..+.++++..+|.++++++++-|..|||+|+++.+++.....
T Consensus 257 p~gn~-----Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv- 330 (412)
T KOG3881|consen 257 PSGNF-----IYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV- 330 (412)
T ss_pred CCCcE-----EEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-
Confidence 99997 78888899999999999998766 788889999999999999999999999999999999777765432
Q ss_pred ccccceeeEEEecC
Q 019482 286 HLGTSIALVEFCPT 299 (340)
Q Consensus 286 ~~~~~i~~~~~~~~ 299 (340)
...++.+-+.++
T Consensus 331 --Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 331 --KSRLTFILLRDD 342 (412)
T ss_pred --hccccEEEecCC
Confidence 456777777654
No 213
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.78 E-value=3e-16 Score=140.16 Aligned_cols=305 Identities=12% Similarity=0.094 Sum_probs=205.7
Q ss_pred CCCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEE
Q 019482 1 MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC 80 (340)
Q Consensus 1 ~~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 80 (340)
+|+...|..++-++.. ..++++|+ .|++|++|+........ .....+.++..-...+.++.+.+.++.+|+
T Consensus 1045 ~Ehs~~v~k~a~s~~~--~s~FvsgS------~DGtVKvW~~~k~~~~~-~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEH--TSLFVSGS------DDGTVKVWNLRKLEGEG-GSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred hhccccccceeecCCC--CceEEEec------CCceEEEeeehhhhcCc-ceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence 4566666666666643 36777776 56669999987543332 133344445545678999999999999999
Q ss_pred EecCCCEEEEEecCceeeeee-ccccCCCCCCCCCe-EEEEEec-CCC-eEEEccCCCcEEEEeCCCCceeecc--ccCc
Q 019482 81 STTNGGCKLFEVYGGATDINL-LAKKMPPLQDAGPQ-KCLSFSV-DGS-RFAAGGVDGHLRIMHWPSLRIILDE--PKAH 154 (340)
Q Consensus 81 ~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~v-~~~~~~~-~~~-~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~ 154 (340)
++.||.|++.+++..+..... ...........+.+ ..-+|.. .+. .++.+..-+.|..||++........ ...+
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence 999999999999863221111 11111111222333 3444443 233 7788888899999999877655443 3445
Q ss_pred cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecC-CcceEEEEECCC
Q 019482 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG-DKALLAVYDIST 233 (340)
Q Consensus 155 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~ 233 (340)
+.|++++.+|.+++++.|+..|.+.+||++=+.++..+......++..+..+|-..+--.. +.++. ..+.|.+|++.+
T Consensus 1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~-vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVS-VSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceE-EEecccCCCceeeeeccc
Confidence 6899999999999999999999999999999999988887677788888888765421111 33333 688999999998
Q ss_pred CcEEeeeecc-CC------------------CeeEEEECCCCCEEEEeeCCCcEEEEeccCceEe---------------
Q 019482 234 WNKIGHKRLL-RK------------------PASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN--------------- 279 (340)
Q Consensus 234 ~~~~~~~~~~-~~------------------~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~--------------- 279 (340)
+.....+... +. ......+...+.++.+|+.|..|+.||....+..
T Consensus 1275 g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~ 1354 (1431)
T KOG1240|consen 1275 GLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNS 1354 (1431)
T ss_pred CcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccc
Confidence 8655444433 10 1112233334568899999999999997542211
Q ss_pred --------------ec-------------------c-------cccccccceeeEEEecCC-eEEEEEecCCcEEEEE
Q 019482 280 --------------HW-------------------S-------KRLHLGTSIALVEFCPTQ-RVVLTASKEWGAMITK 316 (340)
Q Consensus 280 --------------~~-------------------~-------~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iw~ 316 (340)
.. . ...| ..+|+++++.... .+|++++.||.|+||.
T Consensus 1355 ~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H-~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1355 ESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYH-HDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccc-cchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 00 0 0123 3578888886544 6899999999999994
No 214
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=5.7e-16 Score=133.18 Aligned_cols=206 Identities=15% Similarity=0.075 Sum_probs=138.7
Q ss_pred CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc---CCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG---VDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (340)
Q Consensus 86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 162 (340)
.|.++|.+..... .+. .+...+...+|+|||+.|+..+ .+..|.+|++.+++... +...........|
T Consensus 180 ~l~~~d~dg~~~~-~lt-------~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~ 250 (429)
T PRK03629 180 ELRVSDYDGYNQF-VVH-------RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAF 250 (429)
T ss_pred eEEEEcCCCCCCE-Eee-------cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEE
Confidence 6888888765432 221 1446789999999999888654 24579999998876432 2222334557899
Q ss_pred cCCCCeEEEe-eCCC--eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc--eEEEEECCCCcEE
Q 019482 163 SLDSEFLATT-STDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDISTWNKI 237 (340)
Q Consensus 163 ~~~~~~l~~~-~~d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~ 237 (340)
+|||+.|+.. +.++ .|++||+++++... +... ...+....|+|||+.+ +++...++ .|.++|+.+++..
T Consensus 251 SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~-~~~~~~~~wSPDG~~I----~f~s~~~g~~~Iy~~d~~~g~~~ 324 (429)
T PRK03629 251 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDG-RSNNTEPTWFPDSQNL----AYTSDQAGRPQVYKVNINGGAPQ 324 (429)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCC-CCCcCceEECCCCCEE----EEEeCCCCCceEEEEECCCCCeE
Confidence 9999988765 3344 58999998876543 3322 2357889999999973 22223333 5666677766543
Q ss_pred eeeeccCCCeeEEEECCCCCEEEEeeCC---CcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCc
Q 019482 238 GHKRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWG 311 (340)
Q Consensus 238 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 311 (340)
.+...........|+|||++|+..+.+ ..|.+||+.+++..... .. .......|+|||++|+.++.++.
T Consensus 325 -~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt-~~---~~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 325 -RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLT-DT---FLDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred -EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeC-CC---CCCCCceECCCCCEEEEEEcCCC
Confidence 333344455678999999999886543 35888999888754432 21 23456789999999999998865
No 215
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.78 E-value=1.9e-14 Score=120.41 Aligned_cols=275 Identities=16% Similarity=0.199 Sum_probs=178.1
Q ss_pred CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec----CCCEEEEEecCc-eeeeeeccccCC
Q 019482 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT----NGGCKLFEVYGG-ATDINLLAKKMP 107 (340)
Q Consensus 33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~----d~~i~iw~~~~~-~~~~~~~~~~~~ 107 (340)
..+.|..|.++.....+.. . ... .-......++++|++++|.+... ++.|..|++... .....+....
T Consensus 11 ~~~gI~~~~~d~~~g~l~~--~--~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~-- 83 (345)
T PF10282_consen 11 KGGGIYVFRFDEETGTLTL--V--QTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP-- 83 (345)
T ss_dssp SSTEEEEEEEETTTTEEEE--E--EEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE--
T ss_pred CCCcEEEEEEcCCCCCceE--e--eee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec--
Confidence 4567999999766655422 1 111 13456778999999999998876 468999998875 1111111111
Q ss_pred CCCCCCCeEEEEEecCCCeEEEcc-CCCcEEEEeCCCC-ceeec--cc-----------cCccceeEEEecCCCCeEEEe
Q 019482 108 PLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSL-RIILD--EP-----------KAHKSVLDMDFSLDSEFLATT 172 (340)
Q Consensus 108 ~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~-~~~~~--~~-----------~~~~~i~~~~~~~~~~~l~~~ 172 (340)
........++++|++++|+++. .+|.|.++++... ..... .. .......++.++|+++++++.
T Consensus 84 --~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 84 --SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp --ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred --cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 0234556799999999988876 4899999999863 22211 11 112357889999999988876
Q ss_pred eC-CCeEEEEEccCCe--e--EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC--CCcE--Eeeeecc
Q 019482 173 ST-DGSARIWKTEDGV--A--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TWNK--IGHKRLL 243 (340)
Q Consensus 173 ~~-d~~v~iwd~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~--~~~~--~~~~~~~ 243 (340)
.. ...|.+|++.... . ...+........+.+.|+|+++++| +....++.|.++++. ++.. +......
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Y----v~~e~s~~v~v~~~~~~~g~~~~~~~~~~~ 237 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAY----VVNELSNTVSVFDYDPSDGSLTEIQTISTL 237 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEE----EEETTTTEEEEEEEETTTTEEEEEEEEESC
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEE----EecCCCCcEEEEeecccCCceeEEEEeeec
Confidence 53 3589999997654 2 2233334445689999999999743 455678889999988 4432 2222211
Q ss_pred ------CCCeeEEEECCCCCEEEEeeC-CCcEEEEecc--CceEeecccccccccceeeEEEecCCeEEEEEe-cCCcEE
Q 019482 244 ------RKPASVLSISLDGKYLAMGSK-DGDICVVDVK--KMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS-KEWGAM 313 (340)
Q Consensus 244 ------~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~ 313 (340)
......+.++|||++|+++.. .+.|.+|++. +++....-.....+...+.++++|+|++|+++. .++.|.
T Consensus 238 ~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~ 317 (345)
T PF10282_consen 238 PEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVS 317 (345)
T ss_dssp ETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred cccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEE
Confidence 125678999999999988764 5689999993 233222111111134589999999999988776 567999
Q ss_pred EEEecCC
Q 019482 314 ITKLTVP 320 (340)
Q Consensus 314 iw~~~~~ 320 (340)
+|+++..
T Consensus 318 vf~~d~~ 324 (345)
T PF10282_consen 318 VFDIDPD 324 (345)
T ss_dssp EEEEETT
T ss_pred EEEEeCC
Confidence 9999743
No 216
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=4.3e-16 Score=134.72 Aligned_cols=222 Identities=12% Similarity=0.080 Sum_probs=147.9
Q ss_pred EEecCCCCeeEEEEcCCCCeEEEEec---CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEE-EccCC
Q 019482 58 VFDESEGDPMTIAVNPSGDDFVCSTT---NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVD 133 (340)
Q Consensus 58 ~~~~h~~~v~~~~~~~~~~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d 133 (340)
.+..|...+...+|+|||+.|+..+. +..|.+||+.+++.. .+. ...+.+...+|+|||+.|+ +.+.+
T Consensus 196 ~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~-------~~~g~~~~~~~SPDG~~la~~~~~~ 267 (435)
T PRK05137 196 YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVG-------NFPGMTFAPRFSPDGRKVVMSLSQG 267 (435)
T ss_pred EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Eee-------cCCCcccCcEECCCCCEEEEEEecC
Confidence 35567888999999999999887764 358999999877542 221 1335667889999999775 44555
Q ss_pred Cc--EEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeC-CC--eEEEEEccCCeeEEEeecCCCCceeeEEEccC
Q 019482 134 GH--LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKD 208 (340)
Q Consensus 134 g~--i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 208 (340)
+. |++||+.+++.. .+..+........|+|||+.|+..+. ++ .|+++|+..++.. .+... ...+....|+|+
T Consensus 268 g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~-~~~~~~~~~Spd 344 (435)
T PRK05137 268 GNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFG-GGRYSTPVWSPR 344 (435)
T ss_pred CCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecC-CCcccCeEECCC
Confidence 54 777898877653 34444445677899999998887763 33 6888888765543 33322 334677899999
Q ss_pred CCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCC------CcEEEEeccCceEeecc
Q 019482 209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD------GDICVVDVKKMEINHWS 282 (340)
Q Consensus 209 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~ 282 (340)
|+.+++ ......+..|.+||+..+.. ..+. ....+..+.|+|||+.|+..+.+ ..+.++|+..+.... +
T Consensus 345 G~~ia~--~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~-l 419 (435)
T PRK05137 345 GDLIAF--TKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNERE-V 419 (435)
T ss_pred CCEEEE--EEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEE-c
Confidence 997432 11122335788999865543 2232 22346778999999998876543 258888887665533 2
Q ss_pred cccccccceeeEEEec
Q 019482 283 KRLHLGTSIALVEFCP 298 (340)
Q Consensus 283 ~~~~~~~~i~~~~~~~ 298 (340)
.. ...+...+|+|
T Consensus 420 ~~---~~~~~~p~Wsp 432 (435)
T PRK05137 420 PT---PGDASDPAWSP 432 (435)
T ss_pred cC---CCCccCcccCC
Confidence 21 23466777876
No 217
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.78 E-value=6.8e-17 Score=122.88 Aligned_cols=152 Identities=20% Similarity=0.277 Sum_probs=113.1
Q ss_pred eEEEecCCCCeEEEeeC----------CCeEEEEEccC-CeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceE
Q 019482 158 LDMDFSLDSEFLATTST----------DGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALL 226 (340)
Q Consensus 158 ~~~~~~~~~~~l~~~~~----------d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i 226 (340)
..+.|+|+|++|+.-.. -+...+|.++. +.....+.....++|.+++|+|+|+.+. ++.+..+..|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~fa---vi~g~~~~~v 85 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFA---VIYGSMPAKV 85 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEE---EEEccCCccc
Confidence 45889999987665432 13455666533 3344555444456799999999999732 3455667899
Q ss_pred EEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeC---CCcEEEEeccCceEeecccccccccceeeEEEecCCeEE
Q 019482 227 AVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK---DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVV 303 (340)
Q Consensus 227 ~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 303 (340)
.+||++ ++.+..+ ....++.+.|+|+|++|++++. .|.|.+||.++.+.+.... | ..++.++|+|||++|
T Consensus 86 ~lyd~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~--~~~t~~~WsPdGr~~ 158 (194)
T PF08662_consen 86 TLYDVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--H--SDATDVEWSPDGRYL 158 (194)
T ss_pred EEEcCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--c--CcEEEEEEcCCCCEE
Confidence 999997 5555444 3567889999999999999874 4679999999888877653 3 357899999999999
Q ss_pred EEEec------CCcEEEEEecC
Q 019482 304 LTASK------EWGAMITKLTV 319 (340)
Q Consensus 304 ~~~~~------dg~i~iw~~~~ 319 (340)
+++.. |+.++||++.-
T Consensus 159 ~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 159 ATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEEEeccceeccccEEEEEecC
Confidence 98875 78899999863
No 218
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.2e-16 Score=124.89 Aligned_cols=231 Identities=16% Similarity=0.183 Sum_probs=160.0
Q ss_pred CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeCC
Q 019482 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWP 142 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~ 142 (340)
-.+..++|++.-..+|++..|-.|++|+-.. .....+.. .....|.|++|-|. ++.|+.|+..| |.+|...
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks------~sQrnvtclawRPlsaselavgCr~g-IciW~~s 170 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKS------VSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDS 170 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecc------hhhcceeEEEeccCCcceeeeeecce-eEEEEcC
Confidence 4578899999777788999999999999766 32222221 13468999999994 45777777654 8999764
Q ss_pred CCce--------------eeccccCccceeEEEecCCCCeEEEeeC-CCeEEEEEccCCeeEEEeecCCCCceeeEEEcc
Q 019482 143 SLRI--------------ILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK 207 (340)
Q Consensus 143 ~~~~--------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (340)
.... +.+. ..+..|+++.|++||..+++++. |..|.|||..+++.+.-... ..+.+.-+.|||
T Consensus 171 ~tln~~r~~~~~s~~~~qvl~~-pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~-glgg~slLkwSP 248 (445)
T KOG2139|consen 171 RTLNANRNIRMMSTHHLQVLQD-PGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK-GLGGFSLLKWSP 248 (445)
T ss_pred cccccccccccccccchhheeC-CCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc-CCCceeeEEEcC
Confidence 2111 1111 12358999999999999999884 67899999998877655432 335688999999
Q ss_pred CCCcceEEEEEecCCcceEEEEEC-CCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce---------
Q 019482 208 DGTKPFLFCTVQRGDKALLAVYDI-STWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME--------- 277 (340)
Q Consensus 208 ~~~~~~~~~~~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--------- 277 (340)
|+.+ ++++.-|+..++|.. +++..... ....+.|....|+|+|++|+.+.. |.-++|.+.-.+
T Consensus 249 dgd~-----lfaAt~davfrlw~e~q~wt~erw-~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~ 321 (445)
T KOG2139|consen 249 DGDV-----LFAATCDAVFRLWQENQSWTKERW-ILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQ 321 (445)
T ss_pred CCCE-----EEEecccceeeeehhcccceecce-eccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcc
Confidence 9998 788888999999954 44444433 334458999999999998776653 334455442110
Q ss_pred ------Eeecc-----ccc--ccccceeeEEEecCCeEEEEEecCCc
Q 019482 278 ------INHWS-----KRL--HLGTSIALVEFCPTQRVVLTASKEWG 311 (340)
Q Consensus 278 ------~~~~~-----~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~ 311 (340)
++..+ ..+ -..+++.+++|.|.|.+||+.-+.+.
T Consensus 322 ~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 322 SIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred cceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 00000 000 01357899999999999998876543
No 219
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.77 E-value=5.2e-17 Score=133.11 Aligned_cols=174 Identities=20% Similarity=0.262 Sum_probs=133.4
Q ss_pred cCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeCCC-------
Q 019482 72 NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPS------- 143 (340)
Q Consensus 72 ~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~------- 143 (340)
.|.+--++.|-..|.+++.|....+. .++..+.. ......|+|+.|-|. ...++++..+|.+++||.+-
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~-sklfne~r--~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p 258 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEV-SKLFNEER--LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAP 258 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHH-HHhhhhcc--cccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCC
Confidence 34666788888889999999876332 22222111 124478999999994 44667777899999997531
Q ss_pred -------Cc--------------eeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceee
Q 019482 144 -------LR--------------IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIEL 202 (340)
Q Consensus 144 -------~~--------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~ 202 (340)
+. ++....-....|..++|+|||++||+.+.||.+||||..+.+.+..++.-. +...|
T Consensus 259 ~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF-GGLLC 337 (636)
T KOG2394|consen 259 SYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF-GGLLC 337 (636)
T ss_pred cccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhc-cceEE
Confidence 00 011111123468899999999999999999999999999888776666444 46899
Q ss_pred EEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECC
Q 019482 203 CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL 254 (340)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~ 254 (340)
++|||||++ +++++.|..|.||.+...+.+..-.+|+.+|..++|.|
T Consensus 338 vcWSPDGKy-----IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 338 VCWSPDGKY-----IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEcCCccE-----EEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999998 89999999999999999999999999999999999983
No 220
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.7e-17 Score=134.29 Aligned_cols=289 Identities=14% Similarity=0.124 Sum_probs=211.2
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCC--CCeEEE
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVC 80 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~ 80 (340)
+.+-|..+.|+. .+.++++|+ .+..+.+|++......+ ....+|...|....|-|. ...+++
T Consensus 141 H~GcVntV~FN~---~Gd~l~SgS------DD~~vv~WdW~~~~~~l-------~f~SGH~~NvfQaKFiP~s~d~ti~~ 204 (559)
T KOG1334|consen 141 HKGCVNTVHFNQ---RGDVLASGS------DDLQVVVWDWVSGSPKL-------SFESGHCNNVFQAKFIPFSGDRTIVT 204 (559)
T ss_pred CCCccceeeecc---cCceeeccC------ccceEEeehhhccCccc-------ccccccccchhhhhccCCCCCcCcee
Confidence 457788888888 445777666 55669999997443322 224579889998889883 458999
Q ss_pred EecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeCCCCceeeccc--c-Ccc-
Q 019482 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEP--K-AHK- 155 (340)
Q Consensus 81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~-~~~- 155 (340)
++.||.+++=.+.......... ...+|.++|.-++.-|+ ...|.+++.|+.+.-+|++++.....+. . ...
T Consensus 205 ~s~dgqvr~s~i~~t~~~e~t~----rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~ 280 (559)
T KOG1334|consen 205 SSRDGQVRVSEILETGYVENTK----RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKE 280 (559)
T ss_pred ccccCceeeeeeccccceecce----ecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcc
Confidence 9999999998776544332221 12248899999999995 4578999999999999998765432222 1 222
Q ss_pred --ceeEEEecCC-CCeEEEeeCCCeEEEEEccCCee------EEEeec-----CCCCceeeEEEccCCCcceEEEEEecC
Q 019482 156 --SVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVA------WTFLTR-----NSDEKIELCRFSKDGTKPFLFCTVQRG 221 (340)
Q Consensus 156 --~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~------~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~ 221 (340)
....++.+|. ...+++++.|..+++||.+.-.. +..+.. .....|++++|+.++.. ++++.
T Consensus 281 ~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE-----lLaSY 355 (559)
T KOG1334|consen 281 RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE-----LLASY 355 (559)
T ss_pred ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc-----eeeee
Confidence 5678999994 45899999999999999875221 222222 22346899999988776 67778
Q ss_pred CcceEEEEECCC--C----------cEEe-eeeccCC--CeeEEE-ECCCCCEEEEeeCCCcEEEEeccCceEeeccccc
Q 019482 222 DKALLAVYDIST--W----------NKIG-HKRLLRK--PASVLS-ISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285 (340)
Q Consensus 222 ~d~~i~i~d~~~--~----------~~~~-~~~~~~~--~i~~~~-~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 285 (340)
.|-.|+++.-.- + ..+. .+++|.. .|..+- |-|...|+++|+.-|.|.||+-.+++.++.+...
T Consensus 356 nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD 435 (559)
T KOG1334|consen 356 NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD 435 (559)
T ss_pred cccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc
Confidence 888899995432 1 1112 2556643 355554 4688999999999999999999999999888655
Q ss_pred ccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 286 HLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 286 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
++ .|+++.=+|--..||+.|-|..|+||.-.
T Consensus 436 r~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 436 RH--VVNCLEPHPHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred cc--eEeccCCCCCCchhhccCCccceeeecCC
Confidence 52 89999999999999999999999999863
No 221
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=2.2e-16 Score=124.58 Aligned_cols=250 Identities=15% Similarity=0.160 Sum_probs=181.9
Q ss_pred CCCCeeEEEEcCCCC--eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEE
Q 019482 62 SEGDPMTIAVNPSGD--DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (340)
Q Consensus 62 h~~~v~~~~~~~~~~--~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 139 (340)
....|..++|.-+++ .+...+.+..+..+.+............. ...-...+|..++.. |+ .|++|-.+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~-~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAK-TVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCcccccccccc-ccccccccccchhhc-CC-EEEEEecCCcEEEE
Confidence 345688888876554 45555466667777766555433321100 011134566666654 34 67777889999999
Q ss_pred eCCCCc----eeeccccCccceeEEEecCCCC-eEEEeeCC--CeEEEEEccCCeeEEEeecCC--------CCceeeEE
Q 019482 140 HWPSLR----IILDEPKAHKSVLDMDFSLDSE-FLATTSTD--GSARIWKTEDGVAWTFLTRNS--------DEKIELCR 204 (340)
Q Consensus 140 d~~~~~----~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d--~~v~iwd~~~~~~~~~~~~~~--------~~~v~~~~ 204 (340)
..+.+. ....+ .-..++..+.-++... ++++|+.. ..+.+||+++.+++.+-+... .-.++++.
T Consensus 131 ~~k~~d~hss~l~~l-a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKL-ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred eccCCccccccceee-ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence 987433 22222 2234677777777544 56668888 889999999886655433211 12567888
Q ss_pred EccC--CCcceEEEEEecCCcceEEEEECCCCc-EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeec
Q 019482 205 FSKD--GTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW 281 (340)
Q Consensus 205 ~~~~--~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 281 (340)
|.+. ... +++++.-+++++||.+.++ ++..+.....+++++...|+++++++|..-+.+..||+++++.+..
T Consensus 210 Fl~g~~~~~-----fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~ 284 (412)
T KOG3881|consen 210 FLEGSPNYK-----FATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC 284 (412)
T ss_pred ecCCCCCce-----EEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecc
Confidence 8887 443 7889999999999999764 7778888889999999999999999999999999999999998877
Q ss_pred ccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 282 SKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 282 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
...+- .+.|+++..+|..++++++|-|..++|+|++...
T Consensus 285 ~~kg~-tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 285 GLKGI-TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred ccCCc-cCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence 54555 5789999999999999999999999999998744
No 222
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.76 E-value=2.8e-18 Score=138.05 Aligned_cols=197 Identities=16% Similarity=0.222 Sum_probs=171.3
Q ss_pred CeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee
Q 019482 114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT 193 (340)
Q Consensus 114 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~ 193 (340)
..+.+.++.+|++|+.|+..|.|..+|..++.....+ .....|.++.|-.+.+++|++- ...++||| ..|..+..+.
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei-~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI-NVMETVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeee-ehhhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeehh
Confidence 4467899999999999999999999999998866544 3456899999998888888774 67899999 4688888887
Q ss_pred cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEec
Q 019482 194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDV 273 (340)
Q Consensus 194 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 273 (340)
.+ ..+..+.|.|-.-. +++++..|.++.-|+.+|+.+..+....+.+..+.-+|-+..+-+|..+|+|.+|..
T Consensus 208 ~~--~~v~rLeFLPyHfL-----L~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP 280 (545)
T KOG1272|consen 208 RH--IRVARLEFLPYHFL-----LVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP 280 (545)
T ss_pred hc--Cchhhhcccchhhe-----eeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCC
Confidence 44 35899999997643 788999999999999999999999888899999999999999999999999999999
Q ss_pred cCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482 274 KKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD 322 (340)
Q Consensus 274 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (340)
.+.+++..+. .| .++|.++++.++|++++|+|.|..++|||+..-..
T Consensus 281 ~skePLvKiL-cH-~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q 327 (545)
T KOG1272|consen 281 NSKEPLVKIL-CH-RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ 327 (545)
T ss_pred CCcchHHHHH-hc-CCCcceEEECCCCcEEeecccccceeEeeeccccc
Confidence 9998887763 56 57999999999999999999999999999986553
No 223
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=8.8e-16 Score=132.59 Aligned_cols=222 Identities=18% Similarity=0.167 Sum_probs=144.6
Q ss_pred EecCCCCeeEEEEcCCCCeEEEEecC---CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEE-EccCCC
Q 019482 59 FDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDG 134 (340)
Q Consensus 59 ~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg 134 (340)
+..|...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +.. ..+...+.+|+|||+.|+ +.+.+|
T Consensus 199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~-------~~g~~~~~~~SpDG~~l~~~~s~~g 270 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VAS-------FRGINGAPSFSPDGRRLALTLSRDG 270 (433)
T ss_pred eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-ecc-------CCCCccCceECCCCCEEEEEEeCCC
Confidence 44567789999999999999987643 469999998765422 111 223445789999999775 444454
Q ss_pred --cEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeC-CCe--EEEEEccCCeeEEEeecCCCCceeeEEEccCC
Q 019482 135 --HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209 (340)
Q Consensus 135 --~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~--v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (340)
.|++||+.+++.. .+..+.......+|+|||+.|+.++. ++. |+++|+.+++... +... ......++|+|+|
T Consensus 271 ~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~-g~~~~~~~~SpDG 347 (433)
T PRK04922 271 NPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQ-GNYNARASVSPDG 347 (433)
T ss_pred CceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecC-CCCccCEEECCCC
Confidence 5999999887644 34444444567899999998887763 444 6667776665433 3222 2335578999999
Q ss_pred CcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCC---CcEEEEeccCceEeecccccc
Q 019482 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLH 286 (340)
Q Consensus 210 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~ 286 (340)
+.+++. ...+....|.+||+.+++.. .+. +........|+|||++++..+.+ +.|.++++..+.. ..+. .+
T Consensus 348 ~~Ia~~--~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~-~~l~-~~ 421 (433)
T PRK04922 348 KKIAMV--HGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVR-QRLV-SA 421 (433)
T ss_pred CEEEEE--ECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce-EEcc-cC
Confidence 974221 11122347999999887754 332 22234567999999998877653 4588888865443 3332 12
Q ss_pred cccceeeEEEec
Q 019482 287 LGTSIALVEFCP 298 (340)
Q Consensus 287 ~~~~i~~~~~~~ 298 (340)
...+...+|+|
T Consensus 422 -~g~~~~p~wsp 432 (433)
T PRK04922 422 -DGEVREPAWSP 432 (433)
T ss_pred -CCCCCCCccCC
Confidence 24567778876
No 224
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=5.7e-16 Score=133.32 Aligned_cols=199 Identities=21% Similarity=0.209 Sum_probs=130.5
Q ss_pred CCCCeEEEEEecCCCeEEEccCC---CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEE-EeeCCCeEEEEEc--c
Q 019482 111 DAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKT--E 184 (340)
Q Consensus 111 ~~~~v~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~v~iwd~--~ 184 (340)
+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +......+....|+|||+.|+ +.+.++...||.+ .
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 272 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD 272 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence 45678899999999998876643 459999998886543 323334567899999999876 4567777666654 4
Q ss_pred CCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEE--ECCCCcEEeeeeccCCCeeEEEECCCCCEEEEe
Q 019482 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY--DISTWNKIGHKRLLRKPASVLSISLDGKYLAMG 262 (340)
Q Consensus 185 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~--d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 262 (340)
.+. ...+.. +........|+|||+.++ +++..++...+| ++.+++.. .+...........|+|||++|+..
T Consensus 273 ~~~-~~~lt~-~~~~~~~~~wSpDG~~l~----f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~ 345 (427)
T PRK02889 273 GSG-LRRLTQ-SSGIDTEPFFSPDGRSIY----FTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYI 345 (427)
T ss_pred CCC-cEECCC-CCCCCcCeEEcCCCCEEE----EEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEE
Confidence 333 344433 233456789999999732 233333444444 55555432 222223334567899999999987
Q ss_pred eCCC---cEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCC-cEEEEEecCCC
Q 019482 263 SKDG---DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW-GAMITKLTVPA 321 (340)
Q Consensus 263 ~~dg---~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~iw~~~~~~ 321 (340)
+.++ .|.+||+.+++...... . .......|+|||+.|+.++.++ .-.++-+....
T Consensus 346 s~~~g~~~I~v~d~~~g~~~~lt~-~---~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g 404 (427)
T PRK02889 346 SRVGGAFKLYVQDLATGQVTALTD-T---TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG 404 (427)
T ss_pred EccCCcEEEEEEECCCCCeEEccC-C---CCccCceECCCCCEEEEEEecCCCEEEEEEECCC
Confidence 7654 59999998887654332 1 2346789999999888777654 44455555443
No 225
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=1.8e-15 Score=130.80 Aligned_cols=217 Identities=14% Similarity=0.068 Sum_probs=143.4
Q ss_pred CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC---CCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---DGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (340)
Q Consensus 86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 162 (340)
.|.++|.+.... ..+. .+...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+......+...+|
T Consensus 183 ~l~~~d~dg~~~-~~lt-------~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~ 253 (435)
T PRK05137 183 RLAIMDQDGANV-RYLT-------DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRF 253 (435)
T ss_pred EEEEECCCCCCc-EEEe-------cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEE
Confidence 677888755432 2222 25578999999999998887653 468999999887653 33344556778999
Q ss_pred cCCCCeEE-EeeCCCe--EEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee
Q 019482 163 SLDSEFLA-TTSTDGS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (340)
Q Consensus 163 ~~~~~~l~-~~~~d~~--v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~ 239 (340)
+|||+.|+ +.+.++. |++||+++++.. .+.. +........|+|||+.+++ .........|.++|+..++.. .
T Consensus 254 SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~-~~~~~~~~~~spDG~~i~f--~s~~~g~~~Iy~~d~~g~~~~-~ 328 (435)
T PRK05137 254 SPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTD-SPAIDTSPSYSPDGSQIVF--ESDRSGSPQLYVMNADGSNPR-R 328 (435)
T ss_pred CCCCCEEEEEEecCCCceEEEEECCCCceE-EccC-CCCccCceeEcCCCCEEEE--EECCCCCCeEEEEECCCCCeE-E
Confidence 99998775 4555554 777788877653 3432 3345677999999997421 111122357889998776543 3
Q ss_pred eeccCCCeeEEEECCCCCEEEEeeCC---CcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC-Cc---E
Q 019482 240 KRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-WG---A 312 (340)
Q Consensus 240 ~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~---i 312 (340)
+......+....|+|||++|+..+.+ ..|.+||+.++... .+.. ...+....|+|||+.|+..+.+ +. .
T Consensus 329 lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~---~~~~~~p~~spDG~~i~~~~~~~~~~~~~ 404 (435)
T PRK05137 329 ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTS---GFLVEGPTWAPNGRVIMFFRQTPGSGGAP 404 (435)
T ss_pred eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-eccC---CCCCCCCeECCCCCEEEEEEccCCCCCcc
Confidence 33334556778999999999887643 36888898665443 2222 2246788999999988776553 22 3
Q ss_pred EEEEecCC
Q 019482 313 MITKLTVP 320 (340)
Q Consensus 313 ~iw~~~~~ 320 (340)
.+|.++..
T Consensus 405 ~L~~~dl~ 412 (435)
T PRK05137 405 KLYTVDLT 412 (435)
T ss_pred eEEEEECC
Confidence 45555443
No 226
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=2e-15 Score=130.35 Aligned_cols=216 Identities=19% Similarity=0.152 Sum_probs=141.8
Q ss_pred CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC---CcEEEEeCCCCceeeccccCccceeEEEe
Q 019482 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (340)
Q Consensus 86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 162 (340)
.|.+||...... ..+. .+...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +...........|
T Consensus 185 ~l~i~D~~g~~~-~~lt-------~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~ 255 (433)
T PRK04922 185 ALQVADSDGYNP-QTIL-------RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSF 255 (433)
T ss_pred EEEEECCCCCCc-eEee-------cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceE
Confidence 588888764432 2222 245678899999999998877643 469999998876543 2233334557899
Q ss_pred cCCCCeEE-EeeCCC--eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc--eEEEEECCCCcEE
Q 019482 163 SLDSEFLA-TTSTDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDISTWNKI 237 (340)
Q Consensus 163 ~~~~~~l~-~~~~d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~ 237 (340)
+|||+.|+ +.+.++ .|++||+.+++.. .+.. +......++|+|||+.+ +++...++ .|.++|+.+++..
T Consensus 256 SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~-~~~~~~~~~~spDG~~l----~f~sd~~g~~~iy~~dl~~g~~~ 329 (433)
T PRK04922 256 SPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTN-HFGIDTEPTWAPDGKSI----YFTSDRGGRPQIYRVAASGGSAE 329 (433)
T ss_pred CCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECcc-CCCCccceEECCCCCEE----EEEECCCCCceEEEEECCCCCeE
Confidence 99998775 445555 5999999887653 3432 22345678999999973 22233333 5777788776643
Q ss_pred eeeeccCCCeeEEEECCCCCEEEEeeCCC---cEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC-CcEE
Q 019482 238 GHKRLLRKPASVLSISLDGKYLAMGSKDG---DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-WGAM 313 (340)
Q Consensus 238 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~ 313 (340)
.+.........++|+|||++|+..+.++ .|.+||+.+++..... . ........|+|||++|+..+.+ +.-.
T Consensus 330 -~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt-~---~~~~~~p~~spdG~~i~~~s~~~g~~~ 404 (433)
T PRK04922 330 -RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT-P---GSLDESPSFAPNGSMVLYATREGGRGV 404 (433)
T ss_pred -EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECC-C---CCCCCCceECCCCCEEEEEEecCCceE
Confidence 2333333455789999999998875443 5999999887765332 2 1234567999999988776654 4445
Q ss_pred EEEecCCC
Q 019482 314 ITKLTVPA 321 (340)
Q Consensus 314 iw~~~~~~ 321 (340)
||.+...+
T Consensus 405 L~~~~~~g 412 (433)
T PRK04922 405 LAAVSTDG 412 (433)
T ss_pred EEEEECCC
Confidence 55554433
No 227
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=1.2e-15 Score=131.35 Aligned_cols=223 Identities=18% Similarity=0.186 Sum_probs=140.1
Q ss_pred EecCCCCeeEEEEcCCCCeEEEEecC---CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEE-EccCCC
Q 019482 59 FDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDG 134 (340)
Q Consensus 59 ~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg 134 (340)
+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +.. ..+.+...+|+|||+.|+ +.+.+|
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~-------~~g~~~~~~~SPDG~~la~~~~~~g 262 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VAN-------FKGSNSAPAWSPDGRTLAVALSRDG 262 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eec-------CCCCccceEECCCCCEEEEEEccCC
Confidence 44567789999999999999877643 359999998775422 211 224456889999999886 456777
Q ss_pred cEEEE--eCCCCceeeccccCccceeEEEecCCCCeEEEeeC-CCeEEEEEc--cCCeeEEEeecCCCCceeeEEEccCC
Q 019482 135 HLRIM--HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKT--EDGVAWTFLTRNSDEKIELCRFSKDG 209 (340)
Q Consensus 135 ~i~~~--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (340)
...+| |+.++. ...+..+........|+|||+.|+..+. ++...+|.+ ..++. ..+... .......+|+|+|
T Consensus 263 ~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~-g~~~~~~~~SpDG 339 (427)
T PRK02889 263 NSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFT-GSYNTSPRISPDG 339 (427)
T ss_pred CceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecC-CCCcCceEECCCC
Confidence 76665 444443 3344444444567889999998876653 456666655 44433 222211 2234568999999
Q ss_pred CcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCC---cEEEEeccCceEeecccccc
Q 019482 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG---DICVVDVKKMEINHWSKRLH 286 (340)
Q Consensus 210 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~ 286 (340)
+.+++ ....+.+..|.+||+.+++... +.. ........|+|||++|+.++.++ .+.+.++. +.....+. .+
T Consensus 340 ~~Ia~--~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~-~~ 413 (427)
T PRK02889 340 KLLAY--ISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLS-VQ 413 (427)
T ss_pred CEEEE--EEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEee-cC
Confidence 97321 1111223479999998877543 222 22346789999999998887544 35566663 43333332 22
Q ss_pred cccceeeEEEecC
Q 019482 287 LGTSIALVEFCPT 299 (340)
Q Consensus 287 ~~~~i~~~~~~~~ 299 (340)
...+...+|+|-
T Consensus 414 -~g~~~~p~wsp~ 425 (427)
T PRK02889 414 -GGDVREPSWGPF 425 (427)
T ss_pred -CCCCCCCccCCC
Confidence 345777788873
No 228
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=4.4e-17 Score=131.97 Aligned_cols=255 Identities=14% Similarity=0.108 Sum_probs=189.3
Q ss_pred eeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec--CCCeEEEccC
Q 019482 55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGV 132 (340)
Q Consensus 55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~ 132 (340)
+...|.+|.+.|+.+.|+..|..|++++.|..|.+||.........+.. .|...|....|-| +..-+++++.
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S------GH~~NvfQaKFiP~s~d~ti~~~s~ 207 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES------GHCNNVFQAKFIPFSGDRTIVTSSR 207 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccccc------ccccchhhhhccCCCCCcCceeccc
Confidence 3456889999999999999999999999999999999988877666544 3667777778888 3457899999
Q ss_pred CCcEEEEeCCCCce---eeccccCccceeEEEecCCCC-eEEEeeCCCeEEEEEccCCeeEEEee--cCCCC---ceeeE
Q 019482 133 DGHLRIMHWPSLRI---ILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLT--RNSDE---KIELC 203 (340)
Q Consensus 133 dg~i~~~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~~---~v~~~ 203 (340)
||.+++=.+..... ...+..|+++|.-++.-|+.. -|.+++.|+.+.-+|++.+.+...+. ..... ....+
T Consensus 208 dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~I 287 (559)
T KOG1334|consen 208 DGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTI 287 (559)
T ss_pred cCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeE
Confidence 99999987653322 334556778999999999654 59999999999999999876544432 12222 46778
Q ss_pred EEccCCCcceEEEEEecCCcceEEEEECCCCcEE------eeee------ccCCCeeEEEECCCCCEEEEeeCCCcEEEE
Q 019482 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI------GHKR------LLRKPASVLSISLDGKYLAMGSKDGDICVV 271 (340)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~------~~~~------~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 271 (340)
+..|...+. +++++.|..+++||.+.-... ..+- .....|++++++.++.-|.+.-.|-.|+++
T Consensus 288 a~~P~nt~~----faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF 363 (559)
T KOG1334|consen 288 AVDPRNTNE----FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLF 363 (559)
T ss_pred ecCCCCccc----cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEe
Confidence 888887753 688999999999998754321 1211 223568999999887777777778889999
Q ss_pred eccC--c----------eEeecccccccc-cceeeEEE-ecCCeEEEEEecCCcEEEEEecC
Q 019482 272 DVKK--M----------EINHWSKRLHLG-TSIALVEF-CPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 272 d~~~--~----------~~~~~~~~~~~~-~~i~~~~~-~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
.-.. + ........+|.. ..|..+-| -|...++++||+-|.|.||+-..
T Consensus 364 ~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t 425 (559)
T KOG1334|consen 364 NKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT 425 (559)
T ss_pred ccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch
Confidence 5432 2 112222345542 35777775 57889999999999999999654
No 229
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.74 E-value=2.9e-15 Score=115.96 Aligned_cols=271 Identities=14% Similarity=0.093 Sum_probs=182.3
Q ss_pred eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeE-EEEecCC
Q 019482 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF-VCSTTNG 85 (340)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~~~d~ 85 (340)
|.-+.|.-+.. .+..+ ...++.+.+|++. .+.....++.....+.+++|||||+.| .+..-+-
T Consensus 51 i~yieW~ads~---~ilC~-----~yk~~~vqvwsl~--------Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~l 114 (447)
T KOG4497|consen 51 IVYIEWKADSC---HILCV-----AYKDPKVQVWSLV--------QPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDL 114 (447)
T ss_pred hhheeeeccce---eeeee-----eeccceEEEEEee--------cceeEEEeccCCCcceeeeECCCcceEeeeeccee
Confidence 44566775332 22222 4467789999998 666667777888899999999999655 4666777
Q ss_pred CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC--------------------------------
Q 019482 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-------------------------------- 133 (340)
Q Consensus 86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------------------------- 133 (340)
.|.+|.+.+.+...... ....+..++|+|||++.+.+++.
T Consensus 115 riTVWSL~t~~~~~~~~--------pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieW 186 (447)
T KOG4497|consen 115 RITVWSLNTQKGYLLPH--------PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEW 186 (447)
T ss_pred EEEEEEeccceeEEecc--------cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceE
Confidence 89999998876533221 12456888999999887765421
Q ss_pred ----CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee---------------------
Q 019482 134 ----GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA--------------------- 188 (340)
Q Consensus 134 ----g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~--------------------- 188 (340)
..+.+||-.-.-.+... .-.-.+..++|+|.+++|+.|+.|+.+|+.+--+-+.
T Consensus 187 sPdg~~laVwd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke 265 (447)
T KOG4497|consen 187 SPDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKE 265 (447)
T ss_pred CCCCcEEEEecchhhheeeee-eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhh
Confidence 22444442111111111 1113688899999999999999999988854321100
Q ss_pred ---------------------------------------EEEee-----cCCCCceeeEEEccCCCcceEEEEEec--CC
Q 019482 189 ---------------------------------------WTFLT-----RNSDEKIELCRFSKDGTKPFLFCTVQR--GD 222 (340)
Q Consensus 189 ---------------------------------------~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~ 222 (340)
+..++ .+..-.+.-++|++|..+ +++- ..
T Consensus 266 ~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y-----~aTrnd~~ 340 (447)
T KOG4497|consen 266 TFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTY-----AATRNDKY 340 (447)
T ss_pred hcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceE-----EeeecCCC
Confidence 00011 011123556899999885 3332 33
Q ss_pred cceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeE
Q 019482 223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRV 302 (340)
Q Consensus 223 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 302 (340)
-+.+-+||++..+.- ..-....+|....|+|....|+.+.....+++|.......+..... +-.|..+.|..+|..
T Consensus 341 PnalW~Wdlq~l~l~-avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~---GF~i~~l~W~~~g~~ 416 (447)
T KOG4497|consen 341 PNALWLWDLQNLKLH-AVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKK---GFNIQKLQWLQPGEF 416 (447)
T ss_pred CceEEEEechhhhhh-hhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCC---CceeeeEEecCCCcE
Confidence 467999999986643 3333457899999999888888887777899999877666554333 468999999999999
Q ss_pred EEEEecCCc
Q 019482 303 VLTASKEWG 311 (340)
Q Consensus 303 l~~~~~dg~ 311 (340)
++..++|.-
T Consensus 417 i~l~~kDaf 425 (447)
T KOG4497|consen 417 IVLCGKDAF 425 (447)
T ss_pred EEEEcCCce
Confidence 999999953
No 230
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.74 E-value=1.4e-17 Score=128.65 Aligned_cols=223 Identities=12% Similarity=0.136 Sum_probs=158.9
Q ss_pred EEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEE-ccCCCcEEEEeCCCCce
Q 019482 68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWPSLRI 146 (340)
Q Consensus 68 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~ 146 (340)
-..|||+|+++|++++- .+.|-|.++-+....+.. -..|.-+.|..|..++++ ...|+.|.+|++...+-
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c--------ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew 83 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC--------LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW 83 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH--------HHHhhheeeeccceeeeeeeeccceEEEEEeeccee
Confidence 36799999999999877 488888777664433322 245677889988876655 46788999999998888
Q ss_pred eeccccCccceeEEEecCCCCe-EEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc-
Q 019482 147 ILDEPKAHKSVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA- 224 (340)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~- 224 (340)
..++.....++..+.|+|||+. |.+...|-.|.+|.+.+.+....- +....+..++|+|||++. .+....|.
T Consensus 84 ~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~--~pK~~~kg~~f~~dg~f~----ai~sRrDCk 157 (447)
T KOG4497|consen 84 YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP--HPKTNVKGYAFHPDGQFC----AILSRRDCK 157 (447)
T ss_pred EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec--ccccCceeEEECCCCcee----eeeecccHH
Confidence 8888888889999999999965 556667899999999877664433 333457899999999962 12222221
Q ss_pred -eEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEE
Q 019482 225 -LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVV 303 (340)
Q Consensus 225 -~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 303 (340)
.+.+.....+..++.+....-..+.+.|+|||..|++ ||.--...+.. .+.+-.+..++|+|.+++|
T Consensus 158 dyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~a---Ye~~lG~k~v~wsP~~qfl 225 (447)
T KOG4497|consen 158 DYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYA---YERGLGLKFVEWSPCNQFL 225 (447)
T ss_pred HHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeee---eeeccceeEEEeccccceE
Confidence 1223333344455666666667889999999988875 44322222111 2224578899999999999
Q ss_pred EEEecCCcEEEEEe
Q 019482 304 LTASKEWGAMITKL 317 (340)
Q Consensus 304 ~~~~~dg~i~iw~~ 317 (340)
+.|+.|+.++|-+-
T Consensus 226 avGsyD~~lrvlnh 239 (447)
T KOG4497|consen 226 AVGSYDQMLRVLNH 239 (447)
T ss_pred Eeeccchhhhhhce
Confidence 99999999988653
No 231
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.74 E-value=3e-17 Score=141.10 Aligned_cols=239 Identities=15% Similarity=0.224 Sum_probs=177.0
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 84 (340)
..|+|+.|.. .+..++.|. .+..++||..+ +..+.....||.+.|+.++.+.+...+++++.|
T Consensus 191 naVyca~fDr---tg~~Iitgs------dd~lvKiwS~e--------t~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D 253 (1113)
T KOG0644|consen 191 NAVYCAIFDR---TGRYIITGS------DDRLVKIWSME--------TARCLASCRGHSGDITDLAVSSNNTMIAAASND 253 (1113)
T ss_pred hheeeeeecc---ccceEeecC------ccceeeeeecc--------chhhhccCCCCccccchhccchhhhhhhhcccC
Confidence 4589999988 445666555 56669999976 445556788999999999999888899999999
Q ss_pred CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccc-----cCcc----
Q 019482 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP-----KAHK---- 155 (340)
Q Consensus 85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-----~~~~---- 155 (340)
..|++|.+..+..+..+. +|.+.|++++|+|-. +.+.||++++||.+ .......+ ...+
T Consensus 254 ~vIrvWrl~~~~pvsvLr-------ghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s 321 (1113)
T KOG0644|consen 254 KVIRVWRLPDGAPVSVLR-------GHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDS 321 (1113)
T ss_pred ceEEEEecCCCchHHHHh-------ccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCcccccceee
Confidence 999999999988765554 388999999999954 66789999999976 11110000 0000
Q ss_pred ----------------------ceeEEEecCCCCeEEEee-----------CCCeEEEEEccCCeeEEEeecCCCCceee
Q 019482 156 ----------------------SVLDMDFSLDSEFLATTS-----------TDGSARIWKTEDGVAWTFLTRNSDEKIEL 202 (340)
Q Consensus 156 ----------------------~i~~~~~~~~~~~l~~~~-----------~d~~v~iwd~~~~~~~~~~~~~~~~~v~~ 202 (340)
.+.+++|..+.-.+++.+ .+-.+++|++.+++..+.+.. +...+..
T Consensus 322 ~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g-hsd~~yv 400 (1113)
T KOG0644|consen 322 ILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG-HSDEVYV 400 (1113)
T ss_pred eeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc-cccceee
Confidence 122333333333333333 334567788888877766654 4457899
Q ss_pred EEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce
Q 019482 203 CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME 277 (340)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 277 (340)
+.++|-+..+ ..+++.||...|||+-.+.+++.+......+..-+||+||..++....-|.++|.....++
T Consensus 401 Ld~Hpfn~ri----~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 401 LDVHPFNPRI----AMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred eeecCCCcHh----hhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 9999988764 5788999999999999998887776656677788999999999998888999998765543
No 232
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.73 E-value=8.9e-16 Score=116.77 Aligned_cols=156 Identities=16% Similarity=0.156 Sum_probs=108.3
Q ss_pred EEEEEecCCCeEEEccC----------CCcEEEEeCCCC-ceeeccc-cCccceeEEEecCCCCeEEEe--eCCCeEEEE
Q 019482 116 KCLSFSVDGSRFAAGGV----------DGHLRIMHWPSL-RIILDEP-KAHKSVLDMDFSLDSEFLATT--STDGSARIW 181 (340)
Q Consensus 116 ~~~~~~~~~~~l~~~~~----------dg~i~~~d~~~~-~~~~~~~-~~~~~i~~~~~~~~~~~l~~~--~~d~~v~iw 181 (340)
..+.|+|+|++|+.-.. -+...+|.++.. .....+. ...++|.+++|+|+|+.|++. ..+..|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45789999987765432 134555555322 2222222 233479999999999986554 467799999
Q ss_pred EccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEE
Q 019482 182 KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (340)
Q Consensus 182 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 261 (340)
|++ ++.+..+. ...+..+.|+|+|+++++ ...+...|.|.+||.++.+.+..... ..++.++|+|||+++++
T Consensus 89 d~~-~~~i~~~~---~~~~n~i~wsP~G~~l~~--~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 89 DVK-GKKIFSFG---TQPRNTISWSPDGRFLVL--AGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLAT 160 (194)
T ss_pred cCc-ccEeEeec---CCCceEEEECCCCCEEEE--EEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEE
Confidence 996 66666664 345789999999997321 11223457899999998888755543 34789999999999999
Q ss_pred eeC------CCcEEEEeccCceEee
Q 019482 262 GSK------DGDICVVDVKKMEINH 280 (340)
Q Consensus 262 ~~~------dg~i~i~d~~~~~~~~ 280 (340)
+.. |+.++||+.. |+.+.
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~ 184 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLY 184 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeE
Confidence 864 7889999985 44443
No 233
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=5.7e-15 Score=122.30 Aligned_cols=286 Identities=10% Similarity=0.059 Sum_probs=197.6
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCC-C-eeEEEEcCCCCeEEEE
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG-D-PMTIAVNPSGDDFVCS 81 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~-~-v~~~~~~~~~~~l~~~ 81 (340)
..--+.+.-+|+.. .++|+|. ....|++|++..- . ..+..|.+ . |.-.-.+.|-..++.-
T Consensus 51 p~ast~ik~s~DGq--Y~lAtG~------YKP~ikvydlanL--------S--LKFERhlDae~V~feiLsDD~SK~v~L 112 (703)
T KOG2321|consen 51 PTASTRIKVSPDGQ--YLLATGT------YKPQIKVYDLANL--------S--LKFERHLDAEVVDFEILSDDYSKSVFL 112 (703)
T ss_pred ccccceeEecCCCc--EEEEecc------cCCceEEEEcccc--------e--eeeeecccccceeEEEeccchhhheEe
Confidence 33445666777433 5666665 4455999998722 2 23344433 2 3333444444455556
Q ss_pred ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEE
Q 019482 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (340)
Q Consensus 82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~ 161 (340)
..|..|.+..-...-.... -...-.+++++.-..-|++++....|+-++++.|..+..+......++++.
T Consensus 113 ~~DR~IefHak~G~hy~~R----------IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~ 182 (703)
T KOG2321|consen 113 QNDRTIEFHAKYGRHYRTR----------IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVS 182 (703)
T ss_pred ecCceeeehhhcCeeeeee----------cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeee
Confidence 6677776655332211111 112335566665333344445556788899999998877766667899999
Q ss_pred ecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCC----------CceeeEEEccCCCcceEEEEEecCCcceEEEEEC
Q 019482 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD----------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231 (340)
Q Consensus 162 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~ 231 (340)
.++-..+|++|+.+|.|..||.+....+..+..... ..|+++.|+.+|-. ++.|..+|.+.|||+
T Consensus 183 in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~-----~aVGts~G~v~iyDL 257 (703)
T KOG2321|consen 183 INEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLH-----VAVGTSTGSVLIYDL 257 (703)
T ss_pred ecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCcee-----EEeeccCCcEEEEEc
Confidence 999888999999999999999998777666643221 24899999999876 799999999999999
Q ss_pred CCCcEEeeee-ccCCCeeEEEECCC--CCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEec
Q 019482 232 STWNKIGHKR-LLRKPASVLSISLD--GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK 308 (340)
Q Consensus 232 ~~~~~~~~~~-~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 308 (340)
+..+++.... ...-+|..+.|.+. ++.+++. ....++|||-.+++....+.. ...++.+++-|++-+++++-.
T Consensus 258 Ra~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 258 RASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGSGMFFTANE 333 (703)
T ss_pred ccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc---cCCcCceeeecCCceEEEecC
Confidence 9988764332 22357888999775 4455554 456799999999998887654 346999999999999999999
Q ss_pred CCcEEEEEecCCCCCCCC
Q 019482 309 EWGAMITKLTVPADWKGL 326 (340)
Q Consensus 309 dg~i~iw~~~~~~~~~~~ 326 (340)
++.+..|-++.-+..+.|
T Consensus 334 ~~~m~~yyiP~LGPaPrW 351 (703)
T KOG2321|consen 334 SSKMHTYYIPSLGPAPRW 351 (703)
T ss_pred CCcceeEEccccCCCchh
Confidence 998888887654443334
No 234
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=6.8e-14 Score=107.94 Aligned_cols=283 Identities=12% Similarity=0.148 Sum_probs=174.8
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEE-EEe
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV-CST 82 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~~ 82 (340)
..+..+++|+.+. ...+.| .+...++|+.+|-.+..... +....-.+.-+-| ..++|| +|+
T Consensus 5 ~~~~lsvs~NQD~---ScFava-------~~~Gfriyn~~P~ke~~~r~------~~~~G~~~veMLf--R~N~laLVGG 66 (346)
T KOG2111|consen 5 EPKTLSVSFNQDH---SCFAVA-------TDTGFRIYNCDPFKESASRQ------FIDGGFKIVEMLF--RSNYLALVGG 66 (346)
T ss_pred cCceeEEEEccCC---ceEEEE-------ecCceEEEecCchhhhhhhc------cccCchhhhhHhh--hhceEEEecC
Confidence 3456779999853 334433 34459999999743322110 1111111222222 344555 333
Q ss_pred cC------CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC-ceeecccc--C
Q 019482 83 TN------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-RIILDEPK--A 153 (340)
Q Consensus 83 ~d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~--~ 153 (340)
.+ ..+.|||=....+...+ .-..+|.++.+.++ .|++.- .+.|++|...+. +.+..+.. .
T Consensus 67 g~~pky~pNkviIWDD~k~~~i~el--------~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~N 135 (346)
T KOG2111|consen 67 GSRPKYPPNKVIIWDDLKERCIIEL--------SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSN 135 (346)
T ss_pred CCCCCCCCceEEEEecccCcEEEEE--------EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccC
Confidence 33 37999994444433333 24578999999876 555554 578999998743 33332222 1
Q ss_pred ccceeEEEecCCCCeEEEee-CCCeEEEEEccCCee-EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcce-EEEEE
Q 019482 154 HKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL-LAVYD 230 (340)
Q Consensus 154 ~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~-i~i~d 230 (340)
.....+++-+.+...||.-+ .-|.|+|-|+...+. ...+...|+..|.+++.+-+|.. +++++..|+ |+|||
T Consensus 136 PkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~-----vATaStkGTLIRIFd 210 (346)
T KOG2111|consen 136 PKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTL-----VATASTKGTLIRIFD 210 (346)
T ss_pred CCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccE-----EEEeccCcEEEEEEE
Confidence 23444444333444555433 568999999976555 12233456788999999999997 788887776 79999
Q ss_pred CCCCcEEeeeecc--CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeec-----------ccccc-----------
Q 019482 231 ISTWNKIGHKRLL--RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW-----------SKRLH----------- 286 (340)
Q Consensus 231 ~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----------~~~~~----------- 286 (340)
..+++.+.+++.. ...|.+++|||++.+|+++|+.|+|+||.++....... +...-
T Consensus 211 t~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l 290 (346)
T KOG2111|consen 211 TEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQL 290 (346)
T ss_pred cCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEc
Confidence 9999999888754 35799999999999999999999999998865321111 10000
Q ss_pred cccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482 287 LGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 287 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
..++..-++|-.+.+.++..+.||.-+=+.+...
T Consensus 291 ~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~ 324 (346)
T KOG2111|consen 291 PQGTQCIIAFGSETNTVIAICADGSYYKFKFDPK 324 (346)
T ss_pred cCCCcEEEEecCCCCeEEEEEeCCcEEEEEeccc
Confidence 0124445666666455666667776655555433
No 235
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2.8e-16 Score=129.35 Aligned_cols=209 Identities=15% Similarity=0.196 Sum_probs=150.2
Q ss_pred CCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccc-cCccceeEEEecC--CCCeEEEeeCCCeEEEEEccC
Q 019482 109 LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP-KAHKSVLDMDFSL--DSEFLATTSTDGSARIWKTED 185 (340)
Q Consensus 109 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~--~~~~l~~~~~d~~v~iwd~~~ 185 (340)
..|.+.|.|+.|+.+|.+|++|+.|-.+.|||.-..+.+..+. +|...|.++.|-| +.+++++|..|..|+++|+..
T Consensus 47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred ccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence 3589999999999999999999999999999988766665543 5667999999999 566899999999999999974
Q ss_pred Ce----------eEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee----------eeccCC
Q 019482 186 GV----------AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH----------KRLLRK 245 (340)
Q Consensus 186 ~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~----------~~~~~~ 245 (340)
.+ ....+. .|...|..++-.|++... +.+++.||+|+-||++....-.. +...--
T Consensus 127 ~~~~~~d~~~~~~~~~~~-cht~rVKria~~p~~Pht----fwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 127 SKEGGMDHGMEETTRCWS-CHTDRVKRIATAPNGPHT----FWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred ccccccccCccchhhhhh-hhhhhhhheecCCCCCce----EEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 21 122222 334568888999998664 67889999999999987431100 111113
Q ss_pred CeeEEEECCC-CCEEEEeeCCCcEEEEeccCc--------e----------Eeeccccccc----------ccceeeEEE
Q 019482 246 PASVLSISLD-GKYLAMGSKDGDICVVDVKKM--------E----------INHWSKRLHL----------GTSIALVEF 296 (340)
Q Consensus 246 ~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~--------~----------~~~~~~~~~~----------~~~i~~~~~ 296 (340)
...++.++|. ..+|++|+.|-..++||.+.. . ++..+..+|. -..++-+.|
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 4678899994 578999999999999994321 1 1222222221 012677899
Q ss_pred ecCCeEEEEEecCCcEEEEEecCCCC
Q 019482 297 CPTQRVVLTASKEWGAMITKLTVPAD 322 (340)
Q Consensus 297 ~~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (340)
+|+|.-|+..-..-.|+++++.....
T Consensus 282 npNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 282 NPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred CCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 99996555544445799999876554
No 236
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.70 E-value=1.2e-14 Score=113.13 Aligned_cols=252 Identities=13% Similarity=0.176 Sum_probs=166.4
Q ss_pred eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCC------------CCeeEEEEcC
Q 019482 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE------------GDPMTIAVNP 73 (340)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~~ 73 (340)
-|.++.|.. .+.+||+|.++|. +.++.-+..... +......++.|+ ..|+.+.|.+
T Consensus 27 iis~vef~~---~Ge~LatGdkgGR------Vv~f~r~~~~~~---ey~~~t~fqshepEFDYLkSleieEKinkIrw~~ 94 (433)
T KOG1354|consen 27 IISAVEFDH---YGERLATGDKGGR------VVLFEREKLYKG---EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLD 94 (433)
T ss_pred ceeeEEeec---ccceEeecCCCCe------EEEeeccccccc---ceeeeeeeeccCcccchhhhhhhhhhhhhceecC
Confidence 467888888 5678999987665 777765433321 111222333333 3589999998
Q ss_pred CCC--eEEEEecCCCEEEEEecCceeee-----------------------------eeccccCCCCCCCCCeEEEEEec
Q 019482 74 SGD--DFVCSTTNGGCKLFEVYGGATDI-----------------------------NLLAKKMPPLQDAGPQKCLSFSV 122 (340)
Q Consensus 74 ~~~--~l~~~~~d~~i~iw~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~v~~~~~~~ 122 (340)
++. .++..+.|.+|++|.+....... .........-.|.-.|.++.++.
T Consensus 95 ~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns 174 (433)
T KOG1354|consen 95 DGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS 174 (433)
T ss_pred CCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC
Confidence 765 67778889999999986533211 00001111123666788999999
Q ss_pred CCCeEEEccCCCcEEEEeCCCCce---eeccccCc-----cceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeE----
Q 019482 123 DGSRFAAGGVDGHLRIMHWPSLRI---ILDEPKAH-----KSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAW---- 189 (340)
Q Consensus 123 ~~~~l~~~~~dg~i~~~d~~~~~~---~~~~~~~~-----~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~---- 189 (340)
|+..++++. |-.|.+|+++--.. +..+.++. .-|++..|+| ..+.++..+..|+|++.|++....-
T Consensus 175 D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hs 253 (433)
T KOG1354|consen 175 DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHS 253 (433)
T ss_pred ccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchh
Confidence 998888764 77899999864322 22233332 3689999999 5677888888999999999853211
Q ss_pred EEeec-----------CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC-CCcEEeeeeccCC------------
Q 019482 190 TFLTR-----------NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRK------------ 245 (340)
Q Consensus 190 ~~~~~-----------~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~------------ 245 (340)
+.+.. .--..|..+.|+++|++ ++ .-+--+|++||+. ..+++..+..|..
T Consensus 254 KlfEepedp~~rsffseiIsSISDvKFs~sGry-----il-sRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD 327 (433)
T KOG1354|consen 254 KLFEEPEDPSSRSFFSEIISSISDVKFSHSGRY-----IL-SRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEND 327 (433)
T ss_pred hhhccccCCcchhhHHHHhhhhhceEEccCCcE-----EE-EeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhcc
Confidence 00100 01135788999999996 33 3344789999994 5556666655531
Q ss_pred ---CeeEEEECCCCCEEEEeeCCCcEEEEeccCc
Q 019482 246 ---PASVLSISLDGKYLAMGSKDGDICVVDVKKM 276 (340)
Q Consensus 246 ---~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 276 (340)
.-..++|+-++.++++|+..+..++|+...+
T Consensus 328 ~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 328 AIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred chhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 1245789999999999999999999996543
No 237
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.70 E-value=2.6e-14 Score=123.68 Aligned_cols=207 Identities=17% Similarity=0.122 Sum_probs=138.1
Q ss_pred CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC---CcEEEEeCCCCceeeccccCccceeEEEe
Q 019482 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (340)
Q Consensus 86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 162 (340)
.|.++|...... ..+. .+...+...+|+|||++|+.+..+ ..|++||+.+++... +......+..++|
T Consensus 171 ~l~~~d~~g~~~-~~l~-------~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~ 241 (417)
T TIGR02800 171 ELQVADYDGANP-QTIT-------RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAF 241 (417)
T ss_pred eEEEEcCCCCCC-EEee-------cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEE
Confidence 577777654332 2222 134568889999999999877643 479999998876443 2234445667899
Q ss_pred cCCCCeEEE-eeCCC--eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecC--CcceEEEEECCCCcEE
Q 019482 163 SLDSEFLAT-TSTDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG--DKALLAVYDISTWNKI 237 (340)
Q Consensus 163 ~~~~~~l~~-~~~d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~ 237 (340)
+||++.|+. .+.++ .|++||+.+++.. .+.. +........|+|+++.++ +... ....|.++|+.+++..
T Consensus 242 spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~-~~~~~~~~~~s~dg~~l~----~~s~~~g~~~iy~~d~~~~~~~ 315 (417)
T TIGR02800 242 SPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTN-GPGIDTEPSWSPDGKSIA----FTSDRGGSPQIYMMDADGGEVR 315 (417)
T ss_pred CCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCC-CCCCCCCEEECCCCCEEE----EEECCCCCceEEEEECCCCCEE
Confidence 999987764 44444 5888998876543 3332 223455789999998732 2222 2346888898876643
Q ss_pred eeeeccCCCeeEEEECCCCCEEEEeeCCC---cEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcE
Q 019482 238 GHKRLLRKPASVLSISLDGKYLAMGSKDG---DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGA 312 (340)
Q Consensus 238 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 312 (340)
.+.........+.|+|+|++++.++.++ .|.+||+.++....... ........|+|||++|+..+.++..
T Consensus 316 -~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~----~~~~~~p~~spdg~~l~~~~~~~~~ 388 (417)
T TIGR02800 316 -RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD----TGLDESPSFAPNGRMILYATTRGGR 388 (417)
T ss_pred -EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC----CCCCCCceECCCCCEEEEEEeCCCc
Confidence 3444455667889999999999988775 78999998765433221 1234566899999988887776533
No 238
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.4e-14 Score=123.28 Aligned_cols=294 Identities=14% Similarity=0.142 Sum_probs=200.3
Q ss_pred CCCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCC-------eeeEEEecCCCCeeEEEEcC
Q 019482 1 MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSP-------LVTYVFDESEGDPMTIAVNP 73 (340)
Q Consensus 1 ~~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~-------~~~~~~~~h~~~v~~~~~~~ 73 (340)
++...+..|++|+.+ ..++|.|| .++.+++..++.++......+ ....++.||...|.-+.|+.
T Consensus 11 iPnnvkL~c~~WNke---~gyIAcgG------~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe 81 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKE---SGYIACGG------ADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE 81 (1189)
T ss_pred CCCCceEEEEEEccc---CCeEEecc------ccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc
Confidence 356788999999994 35777777 566699999987665554333 35568999999999999999
Q ss_pred CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccC
Q 019482 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153 (340)
Q Consensus 74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 153 (340)
+.+.|-+...+|.|.+|-+..+......... +..+.|.+++|+.||..++.+..||.|.+=.++..+ +....-.
T Consensus 82 ~~QKLTtSDt~GlIiVWmlykgsW~EEMiNn-----RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLk 155 (1189)
T KOG2041|consen 82 NNQKLTTSDTSGLIIVWMLYKGSWCEEMINN-----RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKELK 155 (1189)
T ss_pred ccccccccCCCceEEEEeeecccHHHHHhhC-----cCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecchhcc
Confidence 9899999999999999999888765544433 255789999999999999999999999887766433 3211111
Q ss_pred ccceeEEEecCCCCeEEEeeCCCeEEEEEccCC-------eeEEEee---cCCCCceeeEEEc--------cCCCcceEE
Q 019482 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-------VAWTFLT---RNSDEKIELCRFS--------KDGTKPFLF 215 (340)
Q Consensus 154 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-------~~~~~~~---~~~~~~v~~~~~~--------~~~~~~~~~ 215 (340)
......+.|++|.+.++.+-..|.+.+||.+.. .+..... ......+..+.|. |+...
T Consensus 156 g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~---- 231 (1189)
T KOG2041|consen 156 GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPR---- 231 (1189)
T ss_pred hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCE----
Confidence 124567899999999888888999999997532 1111111 1112235555554 34443
Q ss_pred EEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCC---------CcEEEEeccCceEeecccccc
Q 019482 216 CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD---------GDICVVDVKKMEINHWSKRLH 286 (340)
Q Consensus 216 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~ 286 (340)
++.+-..|.+.+..-.+......+. ..-.+....|+++|..|++++.+ +.|.+|.. -|+.+..+.. .
T Consensus 232 -lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkv-p 307 (1189)
T KOG2041|consen 232 -LAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKV-P 307 (1189)
T ss_pred -EEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEec-C
Confidence 5666667777766544333222222 22567889999999999998764 24555543 3444444432 2
Q ss_pred cccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482 287 LGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 287 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
+..|++++|-..|-.++.+ .|+.|++=++..
T Consensus 308 -g~~It~lsWEg~gLriA~A-vdsfiyfanIRP 338 (1189)
T KOG2041|consen 308 -GSCITGLSWEGTGLRIAIA-VDSFIYFANIRP 338 (1189)
T ss_pred -CceeeeeEEcCCceEEEEE-ecceEEEEeecc
Confidence 4679999998777666655 456666655543
No 239
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=2.9e-12 Score=101.09 Aligned_cols=277 Identities=16% Similarity=0.219 Sum_probs=183.2
Q ss_pred CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC---CCEEEEEecCceeeeeeccccCCCC
Q 019482 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPL 109 (340)
Q Consensus 33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~ 109 (340)
....|..|+++.....+... .+-.+.+.++-++|+|+++.|.++..+ |.|..|.++.......+..... .
T Consensus 14 ~s~gI~v~~ld~~~g~l~~~-----~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~--~ 86 (346)
T COG2706 14 ESQGIYVFNLDTKTGELSLL-----QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT--L 86 (346)
T ss_pred CCCceEEEEEeCcccccchh-----hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc--c
Confidence 35669999999666555322 223467789999999999999887655 6788888876422223322211 1
Q ss_pred CCCCCeEEEEEecCCCeEEEccC-CCcEEEEeCCCCceee---ccccCcc----------ceeEEEecCCCCeEEEeeC-
Q 019482 110 QDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIIL---DEPKAHK----------SVLDMDFSLDSEFLATTST- 174 (340)
Q Consensus 110 ~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~---~~~~~~~----------~i~~~~~~~~~~~l~~~~~- 174 (340)
...+...++++++|++++++.. .|.|.++.++....+. ....|.+ .+....+.|++++|++..-
T Consensus 87 -~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG 165 (346)
T COG2706 87 -PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG 165 (346)
T ss_pred -CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC
Confidence 2233488999999999988865 4789999886522111 1112222 2788899999999998863
Q ss_pred CCeEEEEEccCCeeEEEe--ecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC-cEEeeeecc--------
Q 019482 175 DGSARIWKTEDGVAWTFL--TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-NKIGHKRLL-------- 243 (340)
Q Consensus 175 d~~v~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~-------- 243 (340)
-..|.+|++..++....- ........+.+.|+|+++..++ ..--+++|.+|..... ..+..+..+
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~----v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~ 241 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYL----VNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFT 241 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEE----EeccCCEEEEEEEcCCCceEEEeeeeccCccccC
Confidence 247999999977653221 1123345789999999997543 3345788999998873 222222211
Q ss_pred -CCCeeEEEECCCCCEEEEeeC-CCcEEEEeccC--ceEeecccccccccceeeEEEecCCeEEEEEecC-CcEEEEEec
Q 019482 244 -RKPASVLSISLDGKYLAMGSK-DGDICVVDVKK--MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-WGAMITKLT 318 (340)
Q Consensus 244 -~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~iw~~~ 318 (340)
......+.++|||++|.+... ...|.+|.+.. ++..........+...+...|+++|++|+++..+ ..+.++..+
T Consensus 242 g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 242 GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 245678899999999998854 34688887654 3322211112223457899999999999888875 569999887
Q ss_pred CCC
Q 019482 319 VPA 321 (340)
Q Consensus 319 ~~~ 321 (340)
...
T Consensus 322 ~~T 324 (346)
T COG2706 322 KET 324 (346)
T ss_pred CCC
Confidence 543
No 240
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=2.1e-13 Score=118.19 Aligned_cols=222 Identities=15% Similarity=0.107 Sum_probs=140.6
Q ss_pred EecCCCCeeEEEEcCCCCeEEEEecC---CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEE-ccCCC
Q 019482 59 FDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDG 134 (340)
Q Consensus 59 ~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg 134 (340)
+..+...+....|+|||+.|+..+.+ ..|.+|++.+++... +.. ..+.+....|+|||+.|+. ...+|
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~-------~~g~~~~~~~SpDG~~la~~~~~~g 265 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITN-------FEGLNGAPAWSPDGSKLAFVLSKDG 265 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccC-------CCCCcCCeEECCCCCEEEEEEccCC
Confidence 44566788999999999999876543 368889998765422 111 1234456899999998864 44444
Q ss_pred --cEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeC-CC--eEEEEEccCCeeEEEeecCCCCceeeEEEccCC
Q 019482 135 --HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209 (340)
Q Consensus 135 --~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (340)
.|++||+.+++.. .+..+........|+|||+.|+..+. ++ .|+++|+.+++... +... ........|+|+|
T Consensus 266 ~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~-~~~~~~~~~Spdg 342 (430)
T PRK00178 266 NPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFV-GNYNARPRLSADG 342 (430)
T ss_pred CceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecC-CCCccceEECCCC
Confidence 5888899877644 34344445567889999998776653 33 57778887776433 2211 1234567899999
Q ss_pred CcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCC---CcEEEEeccCceEeecccccc
Q 019482 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLH 286 (340)
Q Consensus 210 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~ 286 (340)
+.+++ .........|.++|+.+++.. .+.. ........|+|||+.++..+.+ ..|.++++...... .+. .+
T Consensus 343 ~~i~~--~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~-~l~-~~ 416 (430)
T PRK00178 343 KTLVM--VHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRL-PLP-TA 416 (430)
T ss_pred CEEEE--EEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceE-ECc-CC
Confidence 97432 111122346889999887653 2222 2222356899999999887654 34777777544332 222 12
Q ss_pred cccceeeEEEec
Q 019482 287 LGTSIALVEFCP 298 (340)
Q Consensus 287 ~~~~i~~~~~~~ 298 (340)
...+...+|+|
T Consensus 417 -~g~~~~p~ws~ 427 (430)
T PRK00178 417 -QGEVREPSWSP 427 (430)
T ss_pred -CCCcCCCccCC
Confidence 34567777876
No 241
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=2.5e-13 Score=117.78 Aligned_cols=216 Identities=15% Similarity=0.132 Sum_probs=139.5
Q ss_pred CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC---CcEEEEeCCCCceeeccccCccceeEEEe
Q 019482 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (340)
Q Consensus 86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 162 (340)
.|.++|.+.... ..+. .+...+....|+|||+.|+..+.+ ..|.+||+.+++... +......+....|
T Consensus 180 ~l~~~d~~g~~~-~~l~-------~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~ 250 (430)
T PRK00178 180 TLQRSDYDGARA-VTLL-------QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAW 250 (430)
T ss_pred EEEEECCCCCCc-eEEe-------cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEE
Confidence 366677665432 2221 244678899999999988776543 369999998876543 3233344557899
Q ss_pred cCCCCeEEE-eeCCC--eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecC--CcceEEEEECCCCcEE
Q 019482 163 SLDSEFLAT-TSTDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG--DKALLAVYDISTWNKI 237 (340)
Q Consensus 163 ~~~~~~l~~-~~~d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~ 237 (340)
+|||+.|+. .+.++ .|+++|+++++.. .+.. .........|+|||+.++ +... ....|.++|+.+++..
T Consensus 251 SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~-~~~~~~~~~~spDg~~i~----f~s~~~g~~~iy~~d~~~g~~~ 324 (430)
T PRK00178 251 SPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTN-HPAIDTEPFWGKDGRTLY----FTSDRGGKPQIYKVNVNGGRAE 324 (430)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCCeE-Eccc-CCCCcCCeEECCCCCEEE----EEECCCCCceEEEEECCCCCEE
Confidence 999998774 44444 6888899877653 3332 233466789999999742 2222 2346888888877643
Q ss_pred eeeeccCCCeeEEEECCCCCEEEEeeCC-C--cEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC-CcEE
Q 019482 238 GHKRLLRKPASVLSISLDGKYLAMGSKD-G--DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-WGAM 313 (340)
Q Consensus 238 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~ 313 (340)
. +...........|+|||++|+..+.+ + .|.++|+.+++...... .. ......|+|||++++..+.+ +.-.
T Consensus 325 ~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~-~~---~~~~p~~spdg~~i~~~~~~~g~~~ 399 (430)
T PRK00178 325 R-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD-TS---LDESPSVAPNGTMLIYATRQQGRGV 399 (430)
T ss_pred E-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC-CC---CCCCceECCCCCEEEEEEecCCceE
Confidence 2 22222334457899999999887653 2 58889998876544322 11 22356899999988776654 5555
Q ss_pred EEEecCCC
Q 019482 314 ITKLTVPA 321 (340)
Q Consensus 314 iw~~~~~~ 321 (340)
+|-++...
T Consensus 400 l~~~~~~g 407 (430)
T PRK00178 400 LMLVSING 407 (430)
T ss_pred EEEEECCC
Confidence 66555544
No 242
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1.8e-13 Score=117.40 Aligned_cols=225 Identities=16% Similarity=0.110 Sum_probs=136.4
Q ss_pred cCCCCeeEEEEcCCCCe--E-EEEecCC--CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-CC
Q 019482 61 ESEGDPMTIAVNPSGDD--F-VCSTTNG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DG 134 (340)
Q Consensus 61 ~h~~~v~~~~~~~~~~~--l-~~~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg 134 (340)
.....+..-+|+|||+. + ++...++ .|.+.++.+++.. .+.. ..+.....+|+|||+.|+..+. +|
T Consensus 182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~-------~~g~~~~p~wSPDG~~Laf~s~~~g 253 (428)
T PRK01029 182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILA-------LQGNQLMPTFSPRKKLLAFISDRYG 253 (428)
T ss_pred cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-Eeec-------CCCCccceEECCCCCEEEEEECCCC
Confidence 34556778899999975 3 2444443 5777777766432 2211 2234456899999998876542 22
Q ss_pred ----cEEEEeCCCC--ceeeccccCc-cceeEEEecCCCCeEEEee-CCCeEEEE--EccC-CeeEEEeecCCCCceeeE
Q 019482 135 ----HLRIMHWPSL--RIILDEPKAH-KSVLDMDFSLDSEFLATTS-TDGSARIW--KTED-GVAWTFLTRNSDEKIELC 203 (340)
Q Consensus 135 ----~i~~~d~~~~--~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~-~d~~v~iw--d~~~-~~~~~~~~~~~~~~v~~~ 203 (340)
.+..|++..+ .....+.... .......|+|||+.|+..+ .++...+| ++.. +.....+... ...+...
T Consensus 254 ~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~-~~~~~~p 332 (428)
T PRK01029 254 NPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK-YRNSSCP 332 (428)
T ss_pred CcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC-CCCccce
Confidence 3444676653 1222222222 3346789999999887665 46655555 4432 2233334322 2356789
Q ss_pred EEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeC---CCcEEEEeccCceEee
Q 019482 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK---DGDICVVDVKKMEINH 280 (340)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~ 280 (340)
.|+|||+.+++ .........|.+||+.+++... +......+....|+|||+.|+.... ...|+++|+.+++...
T Consensus 333 ~wSPDG~~Laf--~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 333 AWSPDGKKIAF--CSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK 409 (428)
T ss_pred eECCCCCEEEE--EEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 99999997422 1111224579999999887643 3333345678999999998876543 3568899998877654
Q ss_pred cccccccccceeeEEEecCC
Q 019482 281 WSKRLHLGTSIALVEFCPTQ 300 (340)
Q Consensus 281 ~~~~~~~~~~i~~~~~~~~~ 300 (340)
... . ...+...+|+|-.
T Consensus 410 Lt~--~-~g~~~~p~Ws~~~ 426 (428)
T PRK01029 410 IVI--G-SGEKRFPSWGAFP 426 (428)
T ss_pred eec--C-CCcccCceecCCC
Confidence 432 1 2356778888743
No 243
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.65 E-value=7.3e-12 Score=104.98 Aligned_cols=255 Identities=16% Similarity=0.198 Sum_probs=158.3
Q ss_pred CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec-CCCEEEEEecCc-eeeeee--c---cc-
Q 019482 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGG-ATDINL--L---AK- 104 (340)
Q Consensus 33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-d~~i~iw~~~~~-~~~~~~--~---~~- 104 (340)
..+.|..|.++.+...+. .. ............++++|++++|+++.. +|.+.++++... ...... . ..
T Consensus 60 ~~g~v~~~~i~~~~g~L~--~~--~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g 135 (345)
T PF10282_consen 60 DSGGVSSYRIDPDTGTLT--LL--NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSG 135 (345)
T ss_dssp TTTEEEEEEEETTTTEEE--EE--EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEE
T ss_pred CCCCEEEEEECCCcceeE--Ee--eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCC
Confidence 566788888886643331 11 112223445678999999999998875 789999999874 322211 1 00
Q ss_pred cCCCCCCCCCeEEEEEecCCCeEEEcc-CCCcEEEEeCCCCce-e---ecc-ccCccceeEEEecCCCCeEEEe-eCCCe
Q 019482 105 KMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRI-I---LDE-PKAHKSVLDMDFSLDSEFLATT-STDGS 177 (340)
Q Consensus 105 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~-~---~~~-~~~~~~i~~~~~~~~~~~l~~~-~~d~~ 177 (340)
.....+......++.|+|+++++++.. ....|.+|++..... + ..+ .........+.|+|+++++... ..+++
T Consensus 136 ~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~ 215 (345)
T PF10282_consen 136 PNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNT 215 (345)
T ss_dssp SSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred CcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCc
Confidence 011112346678999999999887753 235799999876541 1 111 1233467899999999987555 46788
Q ss_pred EEEEEcc--CCee--EEEeec---CC--CCceeeEEEccCCCcceEEEEEecCCcceEEEEECC--CCc--EEeeeeccC
Q 019482 178 ARIWKTE--DGVA--WTFLTR---NS--DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TWN--KIGHKRLLR 244 (340)
Q Consensus 178 v~iwd~~--~~~~--~~~~~~---~~--~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~--~~~--~~~~~~~~~ 244 (340)
|.++++. ++.. +..+.. .. ......++++|||+++ .++....+.|.+|+++ +++ .+.......
T Consensus 216 v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~l----yvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G 291 (345)
T PF10282_consen 216 VSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFL----YVSNRGSNSISVFDLDPATGTLTLVQTVPTGG 291 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEE----EEEECTTTEEEEEEECTTTTTEEEEEEEEESS
T ss_pred EEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEE----EEEeccCCEEEEEEEecCCCceEEEEEEeCCC
Confidence 9999998 4422 222221 11 1257789999999974 3556668899999994 233 333444445
Q ss_pred CCeeEEEECCCCCEEEEeeC-CCcEEEEec--cCceEeecccccccccceeeEEE
Q 019482 245 KPASVLSISLDGKYLAMGSK-DGDICVVDV--KKMEINHWSKRLHLGTSIALVEF 296 (340)
Q Consensus 245 ~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~--~~~~~~~~~~~~~~~~~i~~~~~ 296 (340)
...+.+.++|+|++|+++.. ++.|.+|++ +++.+........ -....++.|
T Consensus 292 ~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~-~~~p~ci~f 345 (345)
T PF10282_consen 292 KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVP-IPSPVCIVF 345 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEE-SSSEEEEEE
T ss_pred CCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEeccccc-CCCCEEEeC
Confidence 55789999999999998874 568999976 4666554332222 234555554
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.65 E-value=2.2e-13 Score=117.99 Aligned_cols=199 Identities=17% Similarity=0.148 Sum_probs=131.1
Q ss_pred EecCCCCeeEEEEcCCCCeEEEEecC---CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEE-ccCCC
Q 019482 59 FDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDG 134 (340)
Q Consensus 59 ~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg 134 (340)
+..+...+...+|+|||++|+.+... ..|++||+.+++..... .+.+.+.+++|+||++.|+. .+.++
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~--------~~~~~~~~~~~spDg~~l~~~~~~~~ 256 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA--------SFPGMNGAPAFSPDGSKLAVSLSKDG 256 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee--------cCCCCccceEECCCCCEEEEEECCCC
Confidence 44566678899999999999887644 47999999876532211 12345567899999987764 44444
Q ss_pred --cEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeC-CC--eEEEEEccCCeeEEEeecCCCCceeeEEEccCC
Q 019482 135 --HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209 (340)
Q Consensus 135 --~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (340)
.|++||+.+++... +..+........|+||++.|+..+. ++ .|+++|+.+++.. .+.. .......+.|+|++
T Consensus 257 ~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~-~~~~~~~~~~spdg 333 (417)
T TIGR02800 257 NPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTF-RGGYNASPSWSPDG 333 (417)
T ss_pred CccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eeec-CCCCccCeEECCCC
Confidence 58889988765433 3333334456789999998876654 33 6888888766543 3332 23456788999999
Q ss_pred CcceEEEEEecCCc---ceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCC---cEEEEeccC
Q 019482 210 TKPFLFCTVQRGDK---ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG---DICVVDVKK 275 (340)
Q Consensus 210 ~~~~~~~~~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~i~d~~~ 275 (340)
+.+ +....+ ..|.+||+.++... .+... .......|+|||++|+..+.++ .+++.+...
T Consensus 334 ~~i-----~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 334 DLI-----AFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred CEE-----EEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence 873 333333 37999999876542 22222 2345568999999988877654 355555443
No 245
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.64 E-value=1.7e-13 Score=104.65 Aligned_cols=293 Identities=12% Similarity=0.081 Sum_probs=182.6
Q ss_pred eeeecCCCccEEEEcCCCCccc------CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC---CCC-eEEE
Q 019482 11 SWIKRPENVNLVVLGKSSRASS------SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP---SGD-DFVC 80 (340)
Q Consensus 11 ~w~~~~~~~~~~~~g~~~~~~~------~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~-~l~~ 80 (340)
.|+|-....+++|.|+..-.-+ ..+.+.+|++..... .+.....- .-...+..+.|.. +|. .++-
T Consensus 16 ~~C~l~~~~~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~----~~l~~~q~-~dts~~~dm~w~~~~~~g~~~l~~ 90 (339)
T KOG0280|consen 16 PICCLCHTRNVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKL----SPLDTLQC-TDTSTEFDMLWRIRETDGDFNLLD 90 (339)
T ss_pred CccccccccceEEEeeEEecCCCCchheeccceEEEeeccccc----Cccceeee-ecccccceeeeeeccCCccceeee
Confidence 3444333346788777544222 345677777753321 22111212 2345677777763 455 5667
Q ss_pred EecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc--eeeccccCcccee
Q 019482 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR--IILDEPKAHKSVL 158 (340)
Q Consensus 81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~i~ 158 (340)
+...|.|.++..........+..-....+. .....++.|++.+..++++..+|.+.+-+..... .++..+.|.-++.
T Consensus 91 a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~-~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~W 169 (339)
T KOG0280|consen 91 AHARGQIQLYRNDEDESSVHLRGLSSKKIS-VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAW 169 (339)
T ss_pred ccccceEEEEeeccceeeeeecccchhhhh-heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeee
Confidence 778899999988765443333221111111 1135788999999999999999999866544332 3346677777888
Q ss_pred EEEecC-CCCeEEEeeCCCeEEEEEccC-CeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC-Cc
Q 019482 159 DMDFSL-DSEFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WN 235 (340)
Q Consensus 159 ~~~~~~-~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~ 235 (340)
..+|+. +.+.+.+|+.|+.+..||+|. ++.+..-...|...|.++.-+|..... +++|+.|..|++||.|+ ++
T Consensus 170 ta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~----I~TGsYDe~i~~~DtRnm~k 245 (339)
T KOG0280|consen 170 TAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTY----IATGSYDECIRVLDTRNMGK 245 (339)
T ss_pred eeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCce----EEEeccccceeeeehhcccC
Confidence 899987 557889999999999999993 334333222334468888888764431 89999999999999995 45
Q ss_pred EEeeeeccCCCeeEEEECCC--CCEEEEeeCCCcEEEEeccCceE----eecccccccccceeeEEEecCCeEEEEEec-
Q 019482 236 KIGHKRLLRKPASVLSISLD--GKYLAMGSKDGDICVVDVKKMEI----NHWSKRLHLGTSIALVEFCPTQRVVLTASK- 308 (340)
Q Consensus 236 ~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 308 (340)
++..- ...+.|+.+.++|. ++.++++-.+| .+|-+.+.... .......| .+-+..-.|......|||++.
T Consensus 246 Pl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~h-dSl~YG~DWd~~~~~lATCsFY 322 (339)
T KOG0280|consen 246 PLFKA-KVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIH-DSLCYGGDWDSKDSFLATCSFY 322 (339)
T ss_pred ccccC-ccccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccc-cceeeccccccccceeeeeecc
Confidence 54332 23478999999994 34455544444 77777655332 22233444 456667777555567888764
Q ss_pred CCcEE-EEE
Q 019482 309 EWGAM-ITK 316 (340)
Q Consensus 309 dg~i~-iw~ 316 (340)
|..++ +|-
T Consensus 323 Dk~~~~~Wl 331 (339)
T KOG0280|consen 323 DKKIRQLWL 331 (339)
T ss_pred ccceeeeee
Confidence 66644 564
No 246
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=6.4e-13 Score=110.07 Aligned_cols=231 Identities=16% Similarity=0.154 Sum_probs=159.3
Q ss_pred eEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCC--eEEE-----ccCCCcEEEE
Q 019482 67 MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS--RFAA-----GGVDGHLRIM 139 (340)
Q Consensus 67 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~-----~~~dg~i~~~ 139 (340)
++..|++|..+.| --..+.+++|++.+.+.....+ |...+..+.+||.+. .+|+ .+.-..|++|
T Consensus 129 W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~kl--------~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~ 199 (566)
T KOG2315|consen 129 WVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQHKL--------SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIY 199 (566)
T ss_pred cccccccchhhhh-hhhcceEEEEecCCccceeeee--------eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEe
Confidence 5888988776443 2234569999998744332222 557888999998633 3333 2445679999
Q ss_pred eCCCCcee-----eccccCccceeEEEecCCCCe-EE--EeeCC---------CeEEEEEccCCeeEEEeecCCCCceee
Q 019482 140 HWPSLRII-----LDEPKAHKSVLDMDFSLDSEF-LA--TTSTD---------GSARIWKTEDGVAWTFLTRNSDEKIEL 202 (340)
Q Consensus 140 d~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~-l~--~~~~d---------~~v~iwd~~~~~~~~~~~~~~~~~v~~ 202 (340)
.......- ..+.. .+. ..+.|++-|.- |+ +..-| .++++.+++...+...+. ..++|.+
T Consensus 200 ~~~~~~~~~~~a~ksFFk-adk-vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~--k~GPVhd 275 (566)
T KOG2315|consen 200 KYPEEGQHQPVANKSFFK-ADK-VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL--KEGPVHD 275 (566)
T ss_pred ccccccccchhhhccccc-cce-eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC--CCCCceE
Confidence 87622211 11111 123 35789886653 22 22223 368888887445544443 5679999
Q ss_pred EEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeC---CCcEEEEeccCceEe
Q 019482 203 CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK---DGDICVVDVKKMEIN 279 (340)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~ 279 (340)
+.|+|+++. ++++.|-.-..+.+||++ ++++ +....++-+++-|+|.|++|+.++- .|.|-+||..+.+.+
T Consensus 276 v~W~~s~~E---F~VvyGfMPAkvtifnlr-~~~v--~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i 349 (566)
T KOG2315|consen 276 VTWSPSGRE---FAVVYGFMPAKVTIFNLR-GKPV--FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI 349 (566)
T ss_pred EEECCCCCE---EEEEEecccceEEEEcCC-CCEe--EeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence 999999987 346777788899999997 4444 4555678889999999999998875 478999999998877
Q ss_pred ecccccccccceeeEEEecCCeEEEEEec------CCcEEEEEecCC
Q 019482 280 HWSKRLHLGTSIALVEFCPTQRVVLTASK------EWGAMITKLTVP 320 (340)
Q Consensus 280 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~ 320 (340)
..+.. ..-+-+.|+|||++++|+.. |+.++||++.-.
T Consensus 350 ~~~~a----~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 350 AKFKA----ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred ccccc----CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 76643 24566889999999998875 689999999643
No 247
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=5e-13 Score=115.56 Aligned_cols=222 Identities=15% Similarity=0.140 Sum_probs=137.0
Q ss_pred EecCCCCeeEEEEcCCCCeEEEEecC-C--CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEE-ccCCC
Q 019482 59 FDESEGDPMTIAVNPSGDDFVCSTTN-G--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDG 134 (340)
Q Consensus 59 ~~~h~~~v~~~~~~~~~~~l~~~~~d-~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg 134 (340)
+..+...+....|+|||+.|+..+.+ + .|.+||+.+++... +.. ..+.....+|+|||+.|+. .+.+|
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~-------~~g~~~~~~wSPDG~~La~~~~~~g 284 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTS-------FPGINGAPRFSPDGKKLALVLSKDG 284 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecC-------CCCCcCCeeECCCCCEEEEEEeCCC
Confidence 34456678899999999998876543 3 58888887765321 111 1123346899999998765 45556
Q ss_pred c--EEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeC-CC--eEEEEEccCCeeEEEeecCCCCceeeEEEccCC
Q 019482 135 H--LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209 (340)
Q Consensus 135 ~--i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (340)
. |+++|+.+++.. .+..+........|+||++.|+..+. ++ .|+++|+.+++... +... .......+|+|||
T Consensus 285 ~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~-g~~~~~~~~SpDG 361 (448)
T PRK04792 285 QPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFE-GEQNLGGSITPDG 361 (448)
T ss_pred CeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecC-CCCCcCeeECCCC
Confidence 4 788888876643 34344445677899999998876653 33 56677777666433 3211 1223457899999
Q ss_pred CcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCC-C--cEEEEeccCceEeecccccc
Q 019482 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD-G--DICVVDVKKMEINHWSKRLH 286 (340)
Q Consensus 210 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~ 286 (340)
+.+++ .........|.++|+.+++.. .+... .......|+|||+.|+..+.+ + .+++++.. +.....+.. +
T Consensus 362 ~~l~~--~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~-~ 435 (448)
T PRK04792 362 RSMIM--VNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPA-G 435 (448)
T ss_pred CEEEE--EEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcC-C
Confidence 97432 111122235777888887653 22221 122345899999988876543 3 37777874 443333322 2
Q ss_pred cccceeeEEEec
Q 019482 287 LGTSIALVEFCP 298 (340)
Q Consensus 287 ~~~~i~~~~~~~ 298 (340)
...+...+|+|
T Consensus 436 -~g~~~~p~Wsp 446 (448)
T PRK04792 436 -QGEVKSPAWSP 446 (448)
T ss_pred -CCCcCCCccCC
Confidence 34567788887
No 248
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.62 E-value=4.4e-14 Score=110.11 Aligned_cols=250 Identities=13% Similarity=0.084 Sum_probs=167.8
Q ss_pred CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCcee-eeeeccc---c------CCCCCCCCCeEEEEEecCCC--eEEEc
Q 019482 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT-DINLLAK---K------MPPLQDAGPQKCLSFSVDGS--RFAAG 130 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~-~~~~~~~---~------~~~~~~~~~v~~~~~~~~~~--~l~~~ 130 (340)
.+-|.++.|...|.+||+|..+|.|.++.-..... ...+... + .....-...|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 35588999999999999999999999997654331 1111111 0 11122346788999998654 56667
Q ss_pred cCCCcEEEEeCCCCceee-----------------------------------cc-ccCccceeEEEecCCCCeEEEeeC
Q 019482 131 GVDGHLRIMHWPSLRIIL-----------------------------------DE-PKAHKSVLDMDFSLDSEFLATTST 174 (340)
Q Consensus 131 ~~dg~i~~~d~~~~~~~~-----------------------------------~~-~~~~~~i~~~~~~~~~~~l~~~~~ 174 (340)
..|.+|++|.+....... .+ ..|.-.|.++.++.|+..++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 789999999875321110 01 12333688999999999998875
Q ss_pred CCeEEEEEccCCee---EEEeecCC----CCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEE----eeee--
Q 019482 175 DGSARIWKTEDGVA---WTFLTRNS----DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI----GHKR-- 241 (340)
Q Consensus 175 d~~v~iwd~~~~~~---~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~----~~~~-- 241 (340)
|-.|.+|+++-... +..++++. ...|++..|+|..-.. ++.++..|+|++-|++....- +.+.
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~----f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep 259 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNV----FVYSSSKGTIRLCDMRQSALCDAHSKLFEEP 259 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccE----EEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence 78999999874322 22222221 2358899999987654 566788999999999853210 0011
Q ss_pred ----------ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC-ceEeeccccccc-----------cc---ceeeEEE
Q 019482 242 ----------LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK-MEINHWSKRLHL-----------GT---SIALVEF 296 (340)
Q Consensus 242 ----------~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~-----------~~---~i~~~~~ 296 (340)
..-..|..+.|+++|+|+++-.. -+|++||+.. .+++... ..|. .. .-..++|
T Consensus 260 edp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~-~vh~~lr~kLc~lYEnD~IfdKFec~~ 337 (433)
T KOG1354|consen 260 EDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETY-PVHEYLRSKLCSLYENDAIFDKFECSW 337 (433)
T ss_pred cCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEE-eehHhHHHHHHHHhhccchhheeEEEE
Confidence 11246788999999999998754 5799999954 3333222 2221 11 2356789
Q ss_pred ecCCeEEEEEecCCcEEEEEecC
Q 019482 297 CPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 297 ~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
+-++.+++||+....++++++..
T Consensus 338 sg~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 338 SGNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred cCCcceEecccccceEEEecCCC
Confidence 99999999999999999999543
No 249
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=6.5e-13 Score=114.86 Aligned_cols=218 Identities=16% Similarity=0.125 Sum_probs=134.5
Q ss_pred CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC---CcEEEEeCCCCceeeccccCccceeEEEe
Q 019482 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (340)
Q Consensus 86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 162 (340)
.+.++|.+..+. ..+. .....+.+..|+|||+.|+..+.+ ..|.+||+.+++... +...........|
T Consensus 199 ~l~i~d~dG~~~-~~l~-------~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~w 269 (448)
T PRK04792 199 QLMIADYDGYNE-QMLL-------RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRF 269 (448)
T ss_pred EEEEEeCCCCCc-eEee-------cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeE
Confidence 466667655432 1221 244678889999999988876532 358899998876432 2222233457899
Q ss_pred cCCCCeEEE-eeCCCe--EEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee
Q 019482 163 SLDSEFLAT-TSTDGS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (340)
Q Consensus 163 ~~~~~~l~~-~~~d~~--v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~ 239 (340)
+|||+.|+. .+.++. |+++|+++++.. .+.. +........|+||++.+++ .........|.++|+.+++...
T Consensus 270 SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~-~~~~~~~p~wSpDG~~I~f--~s~~~g~~~Iy~~dl~~g~~~~- 344 (448)
T PRK04792 270 SPDGKKLALVLSKDGQPEIYVVDIATKALT-RITR-HRAIDTEPSWHPDGKSLIF--TSERGGKPQIYRVNLASGKVSR- 344 (448)
T ss_pred CCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECcc-CCCCccceEECCCCCEEEE--EECCCCCceEEEEECCCCCEEE-
Confidence 999998765 455664 778888776543 3332 2234677899999997422 1111233568888888776532
Q ss_pred eeccCCCeeEEEECCCCCEEEEeeCC-C--cEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEec-CCcEEEE
Q 019482 240 KRLLRKPASVLSISLDGKYLAMGSKD-G--DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK-EWGAMIT 315 (340)
Q Consensus 240 ~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iw 315 (340)
+..........+|+|||++|+..+.+ + .|.++|+.+++..... ... ......|+|||+.|+..+. ++.-.+|
T Consensus 345 Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt-~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 345 LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLT-STR---LDESPSVAPNGTMVIYSTTYQGKQVLA 420 (448)
T ss_pred EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEcc-CCC---CCCCceECCCCCEEEEEEecCCceEEE
Confidence 22222333457899999999887653 3 4666788777654322 111 2234589999988776554 4444455
Q ss_pred EecCCC
Q 019482 316 KLTVPA 321 (340)
Q Consensus 316 ~~~~~~ 321 (340)
-++...
T Consensus 421 ~~~~~G 426 (448)
T PRK04792 421 AVSIDG 426 (448)
T ss_pred EEECCC
Confidence 554444
No 250
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=8.7e-13 Score=113.19 Aligned_cols=217 Identities=15% Similarity=0.029 Sum_probs=129.8
Q ss_pred CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeE---EEccCC--CcEEEEeCCCCceeeccccCccceeEE
Q 019482 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF---AAGGVD--GHLRIMHWPSLRIILDEPKAHKSVLDM 160 (340)
Q Consensus 86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~d--g~i~~~d~~~~~~~~~~~~~~~~i~~~ 160 (340)
.|.+.|.+.... ..+.. ....+..-+|+|||+.+ ++...+ ..|.+.++.+++... +..........
T Consensus 166 ~l~~~d~dG~~~-~~lt~-------~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p 236 (428)
T PRK01029 166 ELWSVDYDGQNL-RPLTQ-------EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMP 236 (428)
T ss_pred eEEEEcCCCCCc-eEccc-------CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccce
Confidence 466666655432 22211 23455677999999752 244444 358888888775432 22333445568
Q ss_pred EecCCCCeEEEeeC-CC----eEEEEEccCC--eeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc--eEEEEEC
Q 019482 161 DFSLDSEFLATTST-DG----SARIWKTEDG--VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDI 231 (340)
Q Consensus 161 ~~~~~~~~l~~~~~-d~----~v~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~ 231 (340)
+|+|||+.|+..+. +| .+..|++..+ .....+...........+|+|||+.++ ++...++ .|.++++
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~La----f~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLV----FVSNKDGRPRIYIMQI 312 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEE----EEECCCCCceEEEEEC
Confidence 99999998886653 22 3444776653 122333322223346789999999732 2333344 4555555
Q ss_pred CC-CcEEeeeeccCCCeeEEEECCCCCEEEEeeCC---CcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEe
Q 019482 232 ST-WNKIGHKRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS 307 (340)
Q Consensus 232 ~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 307 (340)
.. +.....+......+....|+|||+.|+..+.+ ..|.+||+.+++....... ...+....|+|||+.|+...
T Consensus 313 ~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~---~~~~~~p~wSpDG~~L~f~~ 389 (428)
T PRK01029 313 DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS---PENKESPSWAIDSLHLVYSA 389 (428)
T ss_pred cccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC---CCCccceEECCCCCEEEEEE
Confidence 42 22233344444566788999999999876543 4699999998877554321 23567899999998877543
Q ss_pred -cCC--cEEEEEec
Q 019482 308 -KEW--GAMITKLT 318 (340)
Q Consensus 308 -~dg--~i~iw~~~ 318 (340)
.++ .+.++++.
T Consensus 390 ~~~g~~~L~~vdl~ 403 (428)
T PRK01029 390 GNSNESELYLISLI 403 (428)
T ss_pred CCCCCceEEEEECC
Confidence 333 45555554
No 251
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.61 E-value=1.1e-11 Score=101.48 Aligned_cols=266 Identities=12% Similarity=0.013 Sum_probs=161.3
Q ss_pred CceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec----------CCCEEEEEecCceeeeeeccc
Q 019482 35 SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT----------NGGCKLFEVYGGATDINLLAK 104 (340)
Q Consensus 35 ~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~----------d~~i~iw~~~~~~~~~~~~~~ 104 (340)
+.+.+.+.+ .....-.+..-. ....+ ++|||+.|+.+.. +..|.+||..+.+...++...
T Consensus 27 ~~v~ViD~~--------~~~v~g~i~~G~-~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p 96 (352)
T TIGR02658 27 TQVYTIDGE--------AGRVLGMTDGGF-LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP 96 (352)
T ss_pred ceEEEEECC--------CCEEEEEEEccC-CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC
Confidence 667777765 233333333322 23334 9999998876655 678999999999887776543
Q ss_pred cCCCCCCCCCeEEEEEecCCCeEEEcc-C-CCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEE
Q 019482 105 KMPPLQDAGPQKCLSFSVDGSRFAAGG-V-DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK 182 (340)
Q Consensus 105 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd 182 (340)
..+.+........++++|||++|++.. . +..|.+.|+.+++.+..+.-.. ...-+..+++..+ +- +.||......
T Consensus 97 ~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~-~~-~~Dg~~~~v~ 173 (352)
T TIGR02658 97 EGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFF-MH-CRDGSLAKVG 173 (352)
T ss_pred CCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccE-EE-eecCceEEEE
Confidence 322222233445789999999998766 3 6889999999998877665422 2222223222222 21 2344444433
Q ss_pred ccC-CeeE-EEeec-CC-CCce-eeEEEcc-CCCcceEEEEEecCCcceEEEEECCCCc-----EEeeeec-------cC
Q 019482 183 TED-GVAW-TFLTR-NS-DEKI-ELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWN-----KIGHKRL-------LR 244 (340)
Q Consensus 183 ~~~-~~~~-~~~~~-~~-~~~v-~~~~~~~-~~~~~~~~~~~~~~~d~~i~i~d~~~~~-----~~~~~~~-------~~ 244 (340)
+.+ ++.. ..... +. ..++ ..-.|.+ +++. +..... |.|.+.|+.... ....+.. ..
T Consensus 174 ~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~-----~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP 247 (352)
T TIGR02658 174 YGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL-----VWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRP 247 (352)
T ss_pred ecCCCceEEeeeeeecCCccccccCCceEcCCCcE-----EEEecC-CeEEEEecCCCcceecceeeeccccccccccCC
Confidence 322 2211 11000 00 0000 1114455 7775 333333 999999964432 2221111 12
Q ss_pred CCeeEEEECCCCCEEEEeeC----------CCcEEEEeccCceEeecccccccccceeeEEEecCCe-EEEEEe-cCCcE
Q 019482 245 KPASVLSISLDGKYLAMGSK----------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTAS-KEWGA 312 (340)
Q Consensus 245 ~~i~~~~~s~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i 312 (340)
+.+.-++++|+++.+++... .+.|.++|..+++.+..+.. +..+..++++||++ +|++.. .++.|
T Consensus 248 ~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~V 324 (352)
T TIGR02658 248 GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTL 324 (352)
T ss_pred CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcE
Confidence 23345999999999888531 25799999999999987765 44799999999999 777666 57889
Q ss_pred EEEEecCCCC
Q 019482 313 MITKLTVPAD 322 (340)
Q Consensus 313 ~iw~~~~~~~ 322 (340)
.+.|....+.
T Consensus 325 sViD~~t~k~ 334 (352)
T TIGR02658 325 YIFDAETGKE 334 (352)
T ss_pred EEEECcCCeE
Confidence 9999865543
No 252
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.60 E-value=1.6e-13 Score=106.96 Aligned_cols=255 Identities=12% Similarity=0.161 Sum_probs=187.9
Q ss_pred CCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc
Q 019482 52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131 (340)
Q Consensus 52 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 131 (340)
.|.+...++||.+.|++...-|..+-+++.+.|.+++||--.+...-..-... ....+++++.+.++...|++|-
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-----~mP~~~~~~~y~~e~~~L~vg~ 87 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-----YMPSPCSAMEYVSESRRLYVGQ 87 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-----hCCCCceEeeeeccceEEEEEE
Confidence 45555678999999999999898888999999999999965543322111111 1347889999999999999999
Q ss_pred CCCcEEEEeCC----CCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEcc
Q 019482 132 VDGHLRIMHWP----SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK 207 (340)
Q Consensus 132 ~dg~i~~~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (340)
..|++.-+.+. ....+.....|...+..+-|+....++++.+.|..+.---.+.+..+....... ...++.+.-
T Consensus 88 ~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~--~~t~~~~d~ 165 (404)
T KOG1409|consen 88 DNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET--PASALQFDA 165 (404)
T ss_pred ecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec--cCCCCceee
Confidence 99999888654 344556667788899999999888999999998877655555554433222111 111111111
Q ss_pred CCCcceEEEEEecCCcceEEEEEC--CCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc
Q 019482 208 DGTKPFLFCTVQRGDKALLAVYDI--STWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285 (340)
Q Consensus 208 ~~~~~~~~~~~~~~~d~~i~i~d~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 285 (340)
. +...+...+.+..-.+ ....++..+.+|...+.+++|.|..+.+++|..|..+.+||+...+-......+
T Consensus 166 ~-------~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g 238 (404)
T KOG1409|consen 166 L-------YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG 238 (404)
T ss_pred E-------EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc
Confidence 1 2455555555554443 445678889999999999999999999999999999999999876655555566
Q ss_pred ccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 286 HLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 286 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
| ...|..+...+--+.+++++.||.|.+|+++...
T Consensus 239 h-~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 239 H-NDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred c-hhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 6 5688888887778899999999999999998543
No 253
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.60 E-value=1e-13 Score=122.48 Aligned_cols=198 Identities=14% Similarity=0.057 Sum_probs=156.8
Q ss_pred CeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCcc----ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeE
Q 019482 114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK----SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW 189 (340)
Q Consensus 114 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~ 189 (340)
.+....+.-+.+.++.+..+..+.+||...+....+...... ...-+.++++.-++++|+.-+.|.+|+....+..
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p 168 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP 168 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc
Confidence 334445555677888888899999999887776665544332 1222344667778999999999999998743333
Q ss_pred EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEe-eeeccCCCeeEEEECCCCCEEEEeeCCCcE
Q 019482 190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG-HKRLLRKPASVLSISLDGKYLAMGSKDGDI 268 (340)
Q Consensus 190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 268 (340)
..+ ..|++.+.++.|+-||.+ +++.++|.++++|++.+.+... ...+|...+..+.|.|+ .++++++|.+.
T Consensus 169 ~~l-~GHeG~iF~i~~s~dg~~-----i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctc 240 (967)
T KOG0974|consen 169 IRL-KGHEGSIFSIVTSLDGRY-----IASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTC 240 (967)
T ss_pred cee-cccCCceEEEEEccCCcE-----EEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEE
Confidence 334 457788999999999998 8999999999999999988765 66788999999999998 99999999999
Q ss_pred EEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 269 CVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 269 ~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
++|+....+.. .+ ..|....|+.++..++...++|++.|+.+++|++....
T Consensus 241 rvW~~~~~~l~-~y-~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 241 RVWGVNGTQLE-VY-DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred EEEecccceeh-hh-hhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 99976554443 33 56767899999999999999999999999999987543
No 254
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.56 E-value=2.1e-12 Score=107.68 Aligned_cols=192 Identities=19% Similarity=0.139 Sum_probs=153.9
Q ss_pred cCCCeEEEccCCCcEEEEeCCCCceeeccccCc---cceeEEEec--------------------CCCCeEEEeeCCCeE
Q 019482 122 VDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH---KSVLDMDFS--------------------LDSEFLATTSTDGSA 178 (340)
Q Consensus 122 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~---~~i~~~~~~--------------------~~~~~l~~~~~d~~v 178 (340)
|...++|....||.+++|+...++..+.+.... +...+..|. .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 345689999999999999998877655543321 233333332 123457778888999
Q ss_pred EEEEccCCeeEEEee-cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCC
Q 019482 179 RIWKTEDGVAWTFLT-RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK 257 (340)
Q Consensus 179 ~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~ 257 (340)
.+|++..++....+. ..|.+.|.++.++.+-.. +.+++.|+.+..|+....+.++........+.+++.+|||+
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~c-----iyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGC-----IYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCc-----eEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence 999999999988887 677788999998887665 89999999999999999999988888888999999999999
Q ss_pred EEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecC-----CeEE-EEEecCCcEEEEEecCCCC
Q 019482 258 YLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT-----QRVV-LTASKEWGAMITKLTVPAD 322 (340)
Q Consensus 258 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l-~~~~~dg~i~iw~~~~~~~ 322 (340)
.+++++ +.|++||+++.+.+..+ .+| .++|+.++|.-+ |.++ .+...+..+.+|.+....+
T Consensus 158 ~l~~as--~~ik~~~~~~kevv~~f-tgh-~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~k 224 (541)
T KOG4547|consen 158 ILLTAS--RQIKVLDIETKEVVITF-TGH-GSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDK 224 (541)
T ss_pred EEEecc--ceEEEEEccCceEEEEe-cCC-CcceEEEEEEEeccccccceeeeccccccceeEEEEEcccc
Confidence 999986 57999999999999877 467 789999999887 5554 4555677899999887543
No 255
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=2.9e-13 Score=112.39 Aligned_cols=197 Identities=12% Similarity=0.102 Sum_probs=151.1
Q ss_pred eEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCce
Q 019482 67 MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI 146 (340)
Q Consensus 67 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 146 (340)
..++++.-..-|++++....|+-++++.+.....+.. ..+.++++..++...+|++|+.+|.|..||.++...
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~-------~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr 209 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET-------DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR 209 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEcccccccccccc-------ccccceeeeecCccceEEecccCceEEEecchhhhh
Confidence 3455554333344444444588889988877655543 347899999999888999999999999999987654
Q ss_pred eeccc------cCcc-----ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEE
Q 019482 147 ILDEP------KAHK-----SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (340)
Q Consensus 147 ~~~~~------~~~~-----~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (340)
+..+. .+.. .|+++.|+.+|-.+++|+.+|.+.|||++..+++..-.....-+|..+.|.+.+...
T Consensus 210 v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~--- 286 (703)
T KOG2321|consen 210 VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQN--- 286 (703)
T ss_pred heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCc---
Confidence 43321 1222 599999999999999999999999999999999877766666789999998774432
Q ss_pred EEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC
Q 019482 216 CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (340)
Q Consensus 216 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 275 (340)
.+.+.+...++|||-.+|+....+... ..++.+++-|++.+++++.+++.+..|=+..
T Consensus 287 -~v~S~Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 287 -KVVSMDKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred -eEEecchHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 455567788999999999987666543 4589999999999999999998888887655
No 256
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=1.5e-10 Score=91.67 Aligned_cols=279 Identities=11% Similarity=0.147 Sum_probs=171.1
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
.+..+=++|+|+.. .|..+.. .+..+.+..|.+++....+ +......+.++ +...++++++|++++++..
T Consensus 39 ~~nptyl~~~~~~~---~LY~v~~---~~~~ggvaay~iD~~~G~L--t~ln~~~~~g~--~p~yvsvd~~g~~vf~AnY 108 (346)
T COG2706 39 LGNPTYLAVNPDQR---HLYVVNE---PGEEGGVAAYRIDPDDGRL--TFLNRQTLPGS--PPCYVSVDEDGRFVFVANY 108 (346)
T ss_pred cCCCceEEECCCCC---EEEEEEe---cCCcCcEEEEEEcCCCCeE--EEeeccccCCC--CCeEEEECCCCCEEEEEEc
Confidence 34456678888543 3333332 3347779999999765444 22222233332 3488999999999999876
Q ss_pred C-CCEEEEEecCceeeeeecc--ccCCC----CCCCCCeEEEEEecCCCeEEEccC-CCcEEEEeCCCCceeecc---cc
Q 019482 84 N-GGCKLFEVYGGATDINLLA--KKMPP----LQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIILDE---PK 152 (340)
Q Consensus 84 d-~~i~iw~~~~~~~~~~~~~--~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~---~~ 152 (340)
. |.|.++.++.......... .+... -+....+....+.|++++|++..- --.|.+|++..+...... ..
T Consensus 109 ~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~ 188 (346)
T COG2706 109 HSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK 188 (346)
T ss_pred cCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccC
Confidence 5 7899999966432222111 00000 111223889999999999888753 236999999876543211 12
Q ss_pred CccceeEEEecCCCCeEEEee-CCCeEEEEEccCC-eeEEEee------cC--CCCceeeEEEccCCCcceEEEEEecCC
Q 019482 153 AHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDG-VAWTFLT------RN--SDEKIELCRFSKDGTKPFLFCTVQRGD 222 (340)
Q Consensus 153 ~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~-~~~~~~~------~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~ 222 (340)
.......|.|+|++++..... -+++|.+|..... ..+..++ .. .......+..++||+++ -++.-.
T Consensus 189 ~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFL----YasNRg 264 (346)
T COG2706 189 PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFL----YASNRG 264 (346)
T ss_pred CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEE----EEecCC
Confidence 234678999999999866554 5899999998763 2222222 11 12356788999999963 233444
Q ss_pred cceEEEEECCCC--cE--EeeeeccCCCeeEEEECCCCCEEEEeeCCC-cEEEEec--cCceEeecccccccccceeeEE
Q 019482 223 KALLAVYDISTW--NK--IGHKRLLRKPASVLSISLDGKYLAMGSKDG-DICVVDV--KKMEINHWSKRLHLGTSIALVE 295 (340)
Q Consensus 223 d~~i~i~d~~~~--~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~i~d~--~~~~~~~~~~~~~~~~~i~~~~ 295 (340)
...|.+|.+... +. +.....+....+...++|.|++|+++.+++ .|.+|.. .+|++-....... .....++.
T Consensus 265 ~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~-~p~Pvcv~ 343 (346)
T COG2706 265 HDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAV-VPEPVCVK 343 (346)
T ss_pred CCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccC-CCCcEEEE
Confidence 557888887643 22 222223334467899999999999998754 5888865 4565544433233 22344555
Q ss_pred Ee
Q 019482 296 FC 297 (340)
Q Consensus 296 ~~ 297 (340)
|.
T Consensus 344 f~ 345 (346)
T COG2706 344 FL 345 (346)
T ss_pred Ec
Confidence 53
No 257
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.53 E-value=3e-13 Score=119.50 Aligned_cols=191 Identities=13% Similarity=0.150 Sum_probs=149.5
Q ss_pred CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccC
Q 019482 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153 (340)
Q Consensus 74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 153 (340)
+...++.+..+..+.+||........+....+.. .-....-+.++++.-++++|+.-+.|.+|+....+....+.+|
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~---~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GH 174 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERC---TLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGH 174 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceE---EEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceeccc
Confidence 4567888888888999998877655444322110 0012223345666779999999999999998755555567889
Q ss_pred ccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC
Q 019482 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (340)
Q Consensus 154 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 233 (340)
.+.|..+.++-||.++++.|.|.++++|++++.+........|...+..+.|.|+ . +++.+.|.+.++|+..-
T Consensus 175 eG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~------i~t~gedctcrvW~~~~ 247 (967)
T KOG0974|consen 175 EGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-R------IITVGEDCTCRVWGVNG 247 (967)
T ss_pred CCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-e------eEEeccceEEEEEeccc
Confidence 9999999999999999999999999999999988877444467788999999999 3 89999999999997654
Q ss_pred CcEEeeeeccC-CCeeEEEECCCCCEEEEeeCCCcEEEEeccC
Q 019482 234 WNKIGHKRLLR-KPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (340)
Q Consensus 234 ~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 275 (340)
..+..+..|. ..+..++..++...+++++.|+.+++||+..
T Consensus 248 -~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 248 -TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred -ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 3334555554 5789999999999999999999999999865
No 258
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.53 E-value=1.2e-11 Score=100.81 Aligned_cols=144 Identities=16% Similarity=0.219 Sum_probs=115.0
Q ss_pred cCCCCeeEEEEcCCCCeEEEEecCC-CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEE
Q 019482 61 ESEGDPMTIAVNPSGDDFVCSTTNG-GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (340)
Q Consensus 61 ~h~~~v~~~~~~~~~~~l~~~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 139 (340)
+|...|.-..+.-+++-++.|..|| .+-|+|.++++..... ..-+.|.++..+|+|++++.+.....+.+.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e--------~~lg~I~av~vs~dGK~~vvaNdr~el~vi 428 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE--------KDLGNIEAVKVSPDGKKVVVANDRFELWVI 428 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee--------CCccceEEEEEcCCCcEEEEEcCceEEEEE
Confidence 4666788888888888899999998 8999999888743322 144789999999999999999999999999
Q ss_pred eCCCCceeeccccCccceeEEEecCCCCeEEEeeCC----CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE
Q 019482 140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (340)
Q Consensus 140 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (340)
|+++++....-....+-|+.++|+|+++++|-+--+ ..|+++|+..++....... .+.-.+.+|.|+++++++
T Consensus 429 didngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~--ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 429 DIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP--TAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred EecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC--cccccCcccCCCCcEEEE
Confidence 999998766555555689999999999999987655 4799999998877554432 223467889999998654
No 259
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.52 E-value=8.2e-12 Score=104.59 Aligned_cols=185 Identities=15% Similarity=0.162 Sum_probs=127.7
Q ss_pred EEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEcc
Q 019482 128 AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK 207 (340)
Q Consensus 128 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (340)
++-..++.|.+.|..+.+.+..+......-..+.++|||+++++++.||.|.++|+.+++.+.++.... ....+++++
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~--~~~~i~~s~ 87 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG--NPRGIAVSP 87 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS--EEEEEEE--
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC--CcceEEEcC
Confidence 445568999999999998888776654444557899999999999999999999999999999987543 478999999
Q ss_pred CCCcceEEEEEecCCcceEEEEECCCCcEEeeeecc-------CCCeeEEEECCCCCEEEEe-eCCCcEEEEeccCceEe
Q 019482 208 DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-------RKPASVLSISLDGKYLAMG-SKDGDICVVDVKKMEIN 279 (340)
Q Consensus 208 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~ 279 (340)
||+++ +++....+.+.++|.++.++++.+... ...+..+.-+|....+++. -+.+.|.+.|....+.+
T Consensus 88 DG~~~----~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 88 DGKYV----YVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp TTTEE----EEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred CCCEE----EEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence 99973 345567899999999999988877643 2356778788888755544 45588888898765443
Q ss_pred ecccccccccceeeEEEecCCeEEEEE-ecCCcEEEEEecC
Q 019482 280 HWSKRLHLGTSIALVEFCPTQRVVLTA-SKEWGAMITKLTV 319 (340)
Q Consensus 280 ~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iw~~~~ 319 (340)
... ....+.......|+|++++++.+ ..+..+-+++...
T Consensus 164 ~~~-~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~ 203 (369)
T PF02239_consen 164 KVT-TIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT 203 (369)
T ss_dssp EEE-EEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT
T ss_pred cee-eecccccccccccCcccceeeecccccceeEEEeecc
Confidence 221 11224567889999999987664 4556777777653
No 260
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.52 E-value=1.7e-10 Score=107.01 Aligned_cols=298 Identities=11% Similarity=0.131 Sum_probs=181.0
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
+..+|.++.+.++... +++ +..+|.|.++..+++... ...+. ...-+..|.+++||||+..|+..+
T Consensus 74 ~~~~ivs~~yl~d~~~--l~~-------~~~~Gdi~~~~~~~~~~~----~~~E~-VG~vd~GI~a~~WSPD~Ella~vT 139 (928)
T PF04762_consen 74 PNDKIVSFQYLADSES--LCI-------ALASGDIILVREDPDPDE----DEIEI-VGSVDSGILAASWSPDEELLALVT 139 (928)
T ss_pred CCCcEEEEEeccCCCc--EEE-------EECCceEEEEEccCCCCC----ceeEE-EEEEcCcEEEEEECCCcCEEEEEe
Confidence 3567888889886543 232 223444777755542221 11111 122356799999999999999999
Q ss_pred cCCCEEEEEecCc-----------------------eeeeeeccccC---------CC--------CCCCCCeEEEEEec
Q 019482 83 TNGGCKLFEVYGG-----------------------ATDINLLAKKM---------PP--------LQDAGPQKCLSFSV 122 (340)
Q Consensus 83 ~d~~i~iw~~~~~-----------------------~~~~~~~~~~~---------~~--------~~~~~~v~~~~~~~ 122 (340)
.++++.+.+.+-. +...++.+... +. +.....-..++|-.
T Consensus 140 ~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG 219 (928)
T PF04762_consen 140 GEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG 219 (928)
T ss_pred CCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC
Confidence 8888877542110 01111111000 00 11223456789999
Q ss_pred CCCeEEEccC---C---CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeC---CCeEEEEEccCCeeEEEee
Q 019482 123 DGSRFAAGGV---D---GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGVAWTFLT 193 (340)
Q Consensus 123 ~~~~l~~~~~---d---g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~v~iwd~~~~~~~~~~~ 193 (340)
||.++|+.+. . ..++||+-+ |+.......-.+--.+++|.|.|++||+... ...|.+|. ++|..-..+.
T Consensus 220 DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~ 297 (928)
T PF04762_consen 220 DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFT 297 (928)
T ss_pred CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEe
Confidence 9999998764 2 479999954 5543333322233457899999999998764 34577776 4555444443
Q ss_pred c---CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc--EEeeeecc-CCCeeEEEECCC-CCEEEEeeCCC
Q 019482 194 R---NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLL-RKPASVLSISLD-GKYLAMGSKDG 266 (340)
Q Consensus 194 ~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~-~~~i~~~~~s~~-~~~l~~~~~dg 266 (340)
. .....+..+.|++|+..+ +... ...|.+|-..+.. ..+.+... ...+..+.|+|. ...|...+.+|
T Consensus 298 l~~~~~~~~v~~l~Wn~ds~iL-----Av~~-~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g 371 (928)
T PF04762_consen 298 LRFDPEEEKVIELAWNSDSEIL-----AVWL-EDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNG 371 (928)
T ss_pred cCCCCCCceeeEEEECCCCCEE-----EEEe-cCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCC
Confidence 2 335679999999999962 2222 3349999988754 23333322 233455899994 45577776667
Q ss_pred cEEEEecc----Cc----------------eEeec--c-----------cccccccceeeEEEecCCeEEEEEecCCcEE
Q 019482 267 DICVVDVK----KM----------------EINHW--S-----------KRLHLGTSIALVEFCPTQRVVLTASKEWGAM 313 (340)
Q Consensus 267 ~i~i~d~~----~~----------------~~~~~--~-----------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 313 (340)
.+..+++. .+ ..+.. + .......+|..++|++++..+++-..||.+.
T Consensus 372 ~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~ 451 (928)
T PF04762_consen 372 QYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLS 451 (928)
T ss_pred cEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEE
Confidence 66655432 11 00000 0 0011246899999999998899999999999
Q ss_pred EEEecCCCC
Q 019482 314 ITKLTVPAD 322 (340)
Q Consensus 314 iw~~~~~~~ 322 (340)
+|.+.....
T Consensus 452 ~~~~~~~~~ 460 (928)
T PF04762_consen 452 IYEWDLKNM 460 (928)
T ss_pred EEEecCCCc
Confidence 999876543
No 261
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.52 E-value=1.7e-13 Score=127.17 Aligned_cols=205 Identities=16% Similarity=0.240 Sum_probs=160.7
Q ss_pred EEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEE
Q 019482 58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR 137 (340)
Q Consensus 58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 137 (340)
.++.+-..|.++.-+|...+.++|+.||.+++|....+..+...... ....|+.+.|+.+|+.+..+..||.+.
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~------g~s~vtr~~f~~qGnk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA------GNSRVTRSRFNHQGNKFGIVDGDGDLS 2276 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc------CcchhhhhhhcccCCceeeeccCCcee
Confidence 34455667888888999999999999999999999877765544332 237889999999999999999999999
Q ss_pred EEeCCCCceeeccccCccceeEEEecCCCCeEEEee---CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE
Q 019482 138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS---TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (340)
Q Consensus 138 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (340)
+|.+. .+.......|.....++.|-. ..+++++ .++.+.+||..-.....-+...|.+.++++++-|..+.
T Consensus 2277 l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~ql--- 2350 (2439)
T KOG1064|consen 2277 LWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQL--- 2350 (2439)
T ss_pred ecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceE---
Confidence 99977 455666777888888888874 5677765 56899999975432222222456678999999999886
Q ss_pred EEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccc
Q 019482 215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH 286 (340)
Q Consensus 215 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 286 (340)
+++|+.+|.+++||++..+..+.+.. +. ...++++|+..|.++||++.....++.+...|
T Consensus 2351 --lisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2351 --LISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred --EEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhh
Confidence 89999999999999998776655443 44 56799999999999999999887776665444
No 262
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.51 E-value=3.8e-12 Score=97.39 Aligned_cols=253 Identities=14% Similarity=0.059 Sum_probs=157.1
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 84 (340)
..++.+.|...+.++.+ +.+. +...+.|.+|..+.........+.....+.. ....++.|++.+..++++..+
T Consensus 70 s~~~dm~w~~~~~~g~~-~l~~----a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~--~~~lslD~~~~~~~i~vs~s~ 142 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDF-NLLD----AHARGQIQLYRNDEDESSVHLRGLSSKKISV--VEALSLDISTSGTKIFVSDSR 142 (339)
T ss_pred cccceeeeeeccCCccc-eeee----ccccceEEEEeeccceeeeeecccchhhhhh--eeeeEEEeeccCceEEEEcCC
Confidence 44677888875555442 2222 4567789999887544333222222111111 134578899999999999999
Q ss_pred CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCC-CCceeec-cccCccceeEEE
Q 019482 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWP-SLRIILD-EPKAHKSVLDMD 161 (340)
Q Consensus 85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~-~~~~~~~-~~~~~~~i~~~~ 161 (340)
|.+.+-+........... -..|.-++....|+. +.+.+++|+.|+.+..||++ .++.+.. .+.|+..|.++.
T Consensus 143 G~~~~v~~t~~~le~vq~-----wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ 217 (339)
T KOG0280|consen 143 GSISGVYETEMVLEKVQT-----WKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIY 217 (339)
T ss_pred CcEEEEecceeeeeeccc-----ccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEe
Confidence 998865554433222111 113777888888876 55789999999999999998 4444444 445667899998
Q ss_pred ecC-CCCeEEEeeCCCeEEEEEccC-CeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE---
Q 019482 162 FSL-DSEFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK--- 236 (340)
Q Consensus 162 ~~~-~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--- 236 (340)
-+| ...++++|+.|..|++||.|+ ++++..-. ..+.|+.+.++|.-... ++.+..-+-.++-+...+..
T Consensus 218 ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~~~~~----lL~~CMh~G~ki~~~~~~~~e~~ 291 (339)
T KOG0280|consen 218 SSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPEIFHR----LLAACMHNGAKILDSSDKVLEFQ 291 (339)
T ss_pred cCCCCCceEEEeccccceeeeehhcccCccccCc--cccceEEEEecchhhhH----HHHHHHhcCceEEEecccccchh
Confidence 887 678999999999999999994 55554433 34679999999976543 22333333355555544322
Q ss_pred --EeeeeccCCCeeEEEECCCCCEEEEee-CCCcEE-EEeccC
Q 019482 237 --IGHKRLLRKPASVLSISLDGKYLAMGS-KDGDIC-VVDVKK 275 (340)
Q Consensus 237 --~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~-i~d~~~ 275 (340)
......|.+-...-.|.....+|++++ .|+.++ +|-.-+
T Consensus 292 ~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 292 IVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred eeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 222333444344444533345677754 355544 554333
No 263
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=2.1e-11 Score=101.24 Aligned_cols=241 Identities=12% Similarity=0.137 Sum_probs=153.9
Q ss_pred CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCC--eEEE-----EecCCCEEEEEecCceeeeeecccc
Q 019482 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD--DFVC-----STTNGGCKLFEVYGGATDINLLAKK 105 (340)
Q Consensus 33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~-----~~~d~~i~iw~~~~~~~~~~~~~~~ 105 (340)
..+.+.+|+..... .... +-|...|..+.++|.+. .+|+ .+.-+.++||.............+
T Consensus 144 v~nev~f~~~~~f~-----~~~~----kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~k- 213 (566)
T KOG2315|consen 144 VSNEVQFYDLGSFK-----TIQH----KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANK- 213 (566)
T ss_pred hcceEEEEecCCcc-----ceee----eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhc-
Confidence 45568888876421 1111 22567899999999743 4443 344568999988632221111111
Q ss_pred CCCCCCCCCeEEEEEecCCC-eEEEcc--C---------CCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEe-
Q 019482 106 MPPLQDAGPQKCLSFSVDGS-RFAAGG--V---------DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT- 172 (340)
Q Consensus 106 ~~~~~~~~~v~~~~~~~~~~-~l~~~~--~---------dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~- 172 (340)
.+-. ..=-.+.|++-|. +|+.++ - ..++++++++...... -....++|.++.|+|+++.++++
T Consensus 214 --sFFk-adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V-~L~k~GPVhdv~W~~s~~EF~Vvy 289 (566)
T KOG2315|consen 214 --SFFK-ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSV-PLLKEGPVHDVTWSPSGREFAVVY 289 (566)
T ss_pred --cccc-cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEE-ecCCCCCceEEEECCCCCEEEEEE
Confidence 0111 1223477888666 333222 2 2468888877333333 33456799999999999876654
Q ss_pred -eCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEE
Q 019482 173 -STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLS 251 (340)
Q Consensus 173 -~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 251 (340)
-.-..+.|||++ +.++..+. .++-+++-|+|.|+.+.+ ...+.-.|.|-+||+.+.+.+..+.... -+-+.
T Consensus 290 GfMPAkvtifnlr-~~~v~df~---egpRN~~~fnp~g~ii~l--AGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~e 361 (566)
T KOG2315|consen 290 GFMPAKVTIFNLR-GKPVFDFP---EGPRNTAFFNPHGNIILL--AGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFE 361 (566)
T ss_pred ecccceEEEEcCC-CCEeEeCC---CCCccceEECCCCCEEEE--eecCCCCCceEEEeccchhhccccccCC--ceEEE
Confidence 456789999986 66766664 356788999999997432 2334456899999999988776666544 35578
Q ss_pred ECCCCCEEEEeeC------CCcEEEEeccCceEeecccccccccceeeEEEecC
Q 019482 252 ISLDGKYLAMGSK------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (340)
Q Consensus 252 ~s~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~ 299 (340)
|+|||.++++++. |+.++||+........... ......+.|-|-
T Consensus 362 W~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f----~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 362 WSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMF----KSELLQVEWRPF 411 (566)
T ss_pred EcCCCcEEEEEeccccEEecCCeEEEEecCceeehhhh----hHhHhheeeeec
Confidence 9999999999864 7889999985543332221 124777888763
No 264
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.48 E-value=3.7e-10 Score=106.78 Aligned_cols=249 Identities=10% Similarity=0.056 Sum_probs=162.9
Q ss_pred eeEEEEcCC-CCeEEEEecCCCEEEEEecCceeeeeeccccCC-------CCCCCCCeEEEEEecCCCeEEEcc-CCCcE
Q 019482 66 PMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMP-------PLQDAGPQKCLSFSVDGSRFAAGG-VDGHL 136 (340)
Q Consensus 66 v~~~~~~~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i 136 (340)
...++++++ +..+++-..++.|+++|..... ...+...... ....-.....+++.++++.|+++. ..+.|
T Consensus 570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred CceEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 456888875 5566666677889999986543 2222110000 001123468899999888666654 45679
Q ss_pred EEEeCCCCceeecccc----------C-------ccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecC---
Q 019482 137 RIMHWPSLRIILDEPK----------A-------HKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRN--- 195 (340)
Q Consensus 137 ~~~d~~~~~~~~~~~~----------~-------~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--- 195 (340)
+++|+.++... .+.+ . -.....++++| ++..+++.+.++.|++||..++.... +...
T Consensus 649 r~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~ 726 (1057)
T PLN02919 649 REIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYE 726 (1057)
T ss_pred EEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCcc
Confidence 99998765432 1111 0 11346799999 56666777778999999987765432 2110
Q ss_pred -----------CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec-------------c--------
Q 019482 196 -----------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-------------L-------- 243 (340)
Q Consensus 196 -----------~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-------------~-------- 243 (340)
.-.....++++|++..+ .++...++.|++||+.++.......+ .
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~L----YVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~ 802 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKEL----YIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVL 802 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEE----EEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhh
Confidence 01235679999999863 45667789999999987653211100 0
Q ss_pred CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccc-----------cccceeeEEEecCCeEEEEEecCCcE
Q 019482 244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH-----------LGTSIALVEFCPTQRVVLTASKEWGA 312 (340)
Q Consensus 244 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~~~~~dg~i 312 (340)
-.....++++++|+.+++-..++.|++||..++........+. .-.....++++++|+++++-+.++.|
T Consensus 803 l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I 882 (1057)
T PLN02919 803 LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI 882 (1057)
T ss_pred ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence 0123578999999988888889999999998876653321110 01256789999999999999999999
Q ss_pred EEEEecCCC
Q 019482 313 MITKLTVPA 321 (340)
Q Consensus 313 ~iw~~~~~~ 321 (340)
++|++....
T Consensus 883 rvid~~~~~ 891 (1057)
T PLN02919 883 RYLDLNKGE 891 (1057)
T ss_pred EEEECCCCc
Confidence 999987543
No 265
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.47 E-value=1e-10 Score=95.61 Aligned_cols=223 Identities=20% Similarity=0.168 Sum_probs=157.0
Q ss_pred EcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCC-CCC---CCCCeEEEE-Eec-CCCeEEEccCCCcEEEEeCCCC
Q 019482 71 VNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMP-PLQ---DAGPQKCLS-FSV-DGSRFAAGGVDGHLRIMHWPSL 144 (340)
Q Consensus 71 ~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~~---~~~~v~~~~-~~~-~~~~l~~~~~dg~i~~~d~~~~ 144 (340)
.+.||+.++.. ..|.|.+||..+......-..-... ... ...+..-+. |++ +|.+++..++ |...+.+...+
T Consensus 274 ~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 274 ANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred cCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence 35578877653 3467999999887654332221111 000 111222222 444 7889988875 77888776555
Q ss_pred ceeeccccCccceeEEEecCCCCeEEEeeCCC-eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCc
Q 019482 145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDG-SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK 223 (340)
Q Consensus 145 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d 223 (340)
-.++ .++...|.-..+.-+++-++.|..|| .+-|+|.++++..... .. -+.|.++..+|+|+. ++.+.+.
T Consensus 352 ~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e-~~-lg~I~av~vs~dGK~-----~vvaNdr 422 (668)
T COG4946 352 YSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE-KD-LGNIEAVKVSPDGKK-----VVVANDR 422 (668)
T ss_pred eeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee-CC-ccceEEEEEcCCCcE-----EEEEcCc
Confidence 5443 24555688888888888899999998 9999999887654433 23 356999999999997 7788888
Q ss_pred ceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCC----cEEEEeccCceEeecccccccccceeeEEEecC
Q 019482 224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG----DICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (340)
Q Consensus 224 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~ 299 (340)
.+|.+.|+.+++....-+...+-|+.+.|+|+++++|-+--+| .|+++|+.+++....... ...=.+-+|.||
T Consensus 423 ~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~---ta~DfsPaFD~d 499 (668)
T COG4946 423 FELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP---TAYDFSPAFDPD 499 (668)
T ss_pred eEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC---cccccCcccCCC
Confidence 9999999999987655555567799999999999999987665 699999999887765432 223456689999
Q ss_pred CeEEEEEe
Q 019482 300 QRVVLTAS 307 (340)
Q Consensus 300 ~~~l~~~~ 307 (340)
+++|.--+
T Consensus 500 ~ryLYfLs 507 (668)
T COG4946 500 GRYLYFLS 507 (668)
T ss_pred CcEEEEEe
Confidence 99876554
No 266
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=2.2e-10 Score=97.91 Aligned_cols=197 Identities=11% Similarity=0.027 Sum_probs=126.9
Q ss_pred CCeEEEEEecCCCe-EEEccC---CCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEe-eCC--CeEEEEEccC
Q 019482 113 GPQKCLSFSVDGSR-FAAGGV---DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT-STD--GSARIWKTED 185 (340)
Q Consensus 113 ~~v~~~~~~~~~~~-l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d--~~v~iwd~~~ 185 (340)
+......|+|||+. ++..+. +..|.++|+.+++..... ...+......|+|||+.++.. +.+ ..|.++|+..
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 36678999999984 554333 356999999887654433 344455677899999876644 333 4688888877
Q ss_pred CeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCC
Q 019482 186 GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD 265 (340)
Q Consensus 186 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 265 (340)
++. ..+.... .......|+|||+.+++ .........|.++|+.+++....... .. ....|+|||++|+.....
T Consensus 267 g~~-~~LT~~~-~~d~~p~~SPDG~~I~F--~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 267 KTL-TQITNYP-GIDVNGNFVEDDKRIVF--VSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYSSRE 339 (419)
T ss_pred CcE-EEcccCC-CccCccEECCCCCEEEE--EECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEEEcC
Confidence 764 3343222 22446789999997532 11122234788999988776433222 11 124899999998877643
Q ss_pred ---------CcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC-CcEEEEEecCCC
Q 019482 266 ---------GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-WGAMITKLTVPA 321 (340)
Q Consensus 266 ---------g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~iw~~~~~~ 321 (340)
..|.+.|+.+++....... .......|+|||+.|+..+.+ +.-.++-++...
T Consensus 340 ~~~~~~~~~~~I~v~d~~~g~~~~LT~~----~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 340 TNNEFGKNTFNLYLISTNSDYIRRLTAN----GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCcccCCCCcEEEEEECCCCCeEECCCC----CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 3688889988876544321 133468899999987766654 455577666655
No 267
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.46 E-value=1.7e-11 Score=102.43 Aligned_cols=192 Identities=17% Similarity=0.141 Sum_probs=149.8
Q ss_pred cCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEe------c--------------CCCeEEEcc
Q 019482 72 NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFS------V--------------DGSRFAAGG 131 (340)
Q Consensus 72 ~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~--------------~~~~l~~~~ 131 (340)
.|.+.++|....||.+++|+...++....+... ..-.+...+..|. | +-..++-|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~----~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPI----ASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccc----hhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence 345679999999999999999988765555321 1233445555553 1 123677788
Q ss_pred CCCcEEEEeCCCCceeeccc--cCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCC
Q 019482 132 VDGHLRIMHWPSLRIILDEP--KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209 (340)
Q Consensus 132 ~dg~i~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (340)
..|.|.+|++..++...++. .|.+.|.++.++.+-..|.+++.|+.+..|+....+.+..+.... ..+.+++.+||+
T Consensus 78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~-~~~~sl~is~D~ 156 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQK-PLVSSLCISPDG 156 (541)
T ss_pred CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCC-CccceEEEcCCC
Confidence 89999999999988776665 455689999999988999999999999999999988888887544 468999999998
Q ss_pred CcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCC-----CCEEEEe-eCCCcEEEEeccC
Q 019482 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD-----GKYLAMG-SKDGDICVVDVKK 275 (340)
Q Consensus 210 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~-----~~~l~~~-~~dg~i~i~d~~~ 275 (340)
.. ++++ .++|++||+.+++.+..+.+|.++|++++|.-+ |.+++++ ..+..+.+|-...
T Consensus 157 ~~-----l~~a--s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 157 KI-----LLTA--SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CE-----EEec--cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 85 3433 467999999999999999999999999999776 6676654 3455677886654
No 268
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=9.1e-12 Score=106.50 Aligned_cols=235 Identities=11% Similarity=0.106 Sum_probs=169.6
Q ss_pred CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeecc--------ccCCCCCCCCCeEEEEEecCCCeEEEccCCCc
Q 019482 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLA--------KKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH 135 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 135 (340)
....+++|+....++|+|+.||.+++..+.+......... -......|.+.|.-+.|+.+.+.|-+...+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 3477999999999999999999999999876543222211 11112348899999999999999999999999
Q ss_pred EEEEeCCCCceeeccccC--ccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEE-EeecCCCCceeeEEEccCCCcc
Q 019482 136 LRIMHWPSLRIILDEPKA--HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT-FLTRNSDEKIELCRFSKDGTKP 212 (340)
Q Consensus 136 i~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~ 212 (340)
|.+|-+-.+.-....... .+.|.++.|+.||..+...-.||.|.+=.++..+... .+++ .....+.|++|.+.
T Consensus 95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg---~~l~hv~ws~D~~~- 170 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG---QLLAHVLWSEDLEQ- 170 (1189)
T ss_pred EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch---heccceeecccHHH-
Confidence 999999887765544433 3468999999999999999999999888776443321 2222 12457899999987
Q ss_pred eEEEEEecCCcceEEEEECCCCc-------EEe----eeeccCCCeeEEEEC--------CCCCEEEEeeCCCcEEEEec
Q 019482 213 FLFCTVQRGDKALLAVYDISTWN-------KIG----HKRLLRKPASVLSIS--------LDGKYLAMGSKDGDICVVDV 273 (340)
Q Consensus 213 ~~~~~~~~~~d~~i~i~d~~~~~-------~~~----~~~~~~~~i~~~~~s--------~~~~~l~~~~~dg~i~i~d~ 273 (340)
++.+-..|.+.+||....- +.. .+......|..+.|. ||...++++-.+|.+.|..-
T Consensus 171 ----~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~ 246 (1189)
T KOG2041|consen 171 ----ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS 246 (1189)
T ss_pred ----HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence 5666778999999976321 100 111122335555553 57788999999999998866
Q ss_pred cCceEeecccccccccceeeEEEecCCeEEEEEecC
Q 019482 274 KKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE 309 (340)
Q Consensus 274 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 309 (340)
........+.. +-.+..+.|+++|..|+.+|.|
T Consensus 247 eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 247 ENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred cCCCCCeEEec---ccEeecceecCCCcEEEEccCc
Confidence 55443333322 3578999999999999999976
No 269
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.42 E-value=1e-10 Score=96.20 Aligned_cols=243 Identities=14% Similarity=0.106 Sum_probs=170.9
Q ss_pred CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC--------
Q 019482 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-------- 133 (340)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------- 133 (340)
..-++..++|||.|.+|++....+ |.+|.-........+. ...|..+.|+|+++||.+=+..
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~---------~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e 100 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR---------HPDVKYLDFSPNEKYLVTWSREPIIEPEIE 100 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheeeee---------cCCceecccCcccceeeeeccCCccChhhc
Confidence 455788999999999999988888 9999987665444432 2578999999999999986543
Q ss_pred -------CcEEEEeCCCCceeeccccCccc--ee-EEEecCCCCeEEEeeCCCeEEEEEccCCee-EEEeecCCCCceee
Q 019482 134 -------GHLRIMHWPSLRIILDEPKAHKS--VL-DMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIEL 202 (340)
Q Consensus 134 -------g~i~~~d~~~~~~~~~~~~~~~~--i~-~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~ 202 (340)
..+.+||+.++..+..+.....+ .. -+.|+-+.+++|-.. ...++|+++ ++.. ...+..-....+..
T Consensus 101 ~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~~~p~~~lr~~gi~d 178 (561)
T COG5354 101 ISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIEEHPFKNLRPVGILD 178 (561)
T ss_pred cCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccccCchhhccccceee
Confidence 35999999999988777665544 44 688998888776553 457999997 3221 11111112245888
Q ss_pred EEEccCCCcceEEEE--EecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEee-----------CCCcEE
Q 019482 203 CRFSKDGTKPFLFCT--VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-----------KDGDIC 269 (340)
Q Consensus 203 ~~~~~~~~~~~~~~~--~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-----------~dg~i~ 269 (340)
..|+|.+...-++.. -..+...++++|.+..+..+.........-..+.|.+.|++|++-- ....++
T Consensus 179 FsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLy 258 (561)
T COG5354 179 FSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLY 258 (561)
T ss_pred EEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEE
Confidence 999998665432211 2346688999999998877766655555567799999999887531 135688
Q ss_pred EEeccCceEeecccccccccceeeEEEecCCeEEEEEe--cCCcEEEEEecC
Q 019482 270 VVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS--KEWGAMITKLTV 319 (340)
Q Consensus 270 i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iw~~~~ 319 (340)
|++++...+.... . ..++|...+|.|.++.+++.+ .+-.+.+++++.
T Consensus 259 l~~~~e~~i~V~~--~-~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 259 LLRITERSIPVEK--D-LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred EEeecccccceec--c-ccccceeeeecccCCceeEEecccccceeeccccc
Confidence 8888755443332 1 257999999999987766655 566677777653
No 270
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.42 E-value=4.1e-10 Score=92.78 Aligned_cols=282 Identities=15% Similarity=0.095 Sum_probs=179.5
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
...|+..++|+| .+.+++ +.....|.+|...... .+ ..+ .| ..|..+.|+|.++||.+=+
T Consensus 31 ~~~p~~~~~~SP---~G~~l~-------~~~~~~V~~~~g~~~~-~l-------~~~-~~-~~V~~~~fSP~~kYL~tw~ 90 (561)
T COG5354 31 ENWPVAYVSESP---LGTYLF-------SEHAAGVECWGGPSKA-KL-------VRF-RH-PDVKYLDFSPNEKYLVTWS 90 (561)
T ss_pred cCcchhheeecC---cchhee-------hhhccceEEccccchh-he-------eee-ec-CCceecccCcccceeeeec
Confidence 356788899999 445566 3334447888654222 11 111 13 4699999999999999865
Q ss_pred cCC---------------CEEEEEecCceeeeeeccccCCCCCCCCCeE-EEEEecCCCeEEEccCCCcEEEEeCCCCce
Q 019482 83 TNG---------------GCKLFEVYGGATDINLLAKKMPPLQDAGPQK-CLSFSVDGSRFAAGGVDGHLRIMHWPSLRI 146 (340)
Q Consensus 83 ~d~---------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 146 (340)
..+ .+.+||..++.....+...... .... -+.|+.+.+++|-.. ...++++++ +...
T Consensus 91 ~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~-----~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~ 163 (561)
T COG5354 91 REPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP-----YLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNI 163 (561)
T ss_pred cCCccChhhccCCccccCceeEEeccCceeEeeccccCCc-----ccccceeeeeecchhhhhhc-cCeEEEEec-CCcc
Confidence 433 4899999998876665432211 1123 578998888776553 356999997 3322
Q ss_pred e-eccccC-ccceeEEEecCCC--CeEEE-----eeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEE
Q 019482 147 I-LDEPKA-HKSVLDMDFSLDS--EFLAT-----TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT 217 (340)
Q Consensus 147 ~-~~~~~~-~~~i~~~~~~~~~--~~l~~-----~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 217 (340)
. ..+... ...|....|+|.+ ..|+. .+.++++++|.+..+..+.+... ....-..+.|.+.|+++.+...
T Consensus 164 ~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l-fk~~~~qLkW~~~g~~ll~l~~ 242 (561)
T COG5354 164 EEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL-FKVSGVQLKWQVLGKYLLVLVM 242 (561)
T ss_pred ccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee-EeecccEEEEecCCceEEEEEE
Confidence 1 111111 2478899999964 34443 45678999999987666544331 1122356889999987543322
Q ss_pred Eec-C-----CcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEee--CCCcEEEEeccCceEeeccccccccc
Q 019482 218 VQR-G-----DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS--KDGDICVVDVKKMEINHWSKRLHLGT 289 (340)
Q Consensus 218 ~~~-~-----~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~ 289 (340)
.-. + ....+.++++...... ......++|...+|.|.++.+++.+ .+-.+.++|++.. ....+. ..
T Consensus 243 t~~ksnKsyfgesnLyl~~~~e~~i~-V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P----e~ 316 (561)
T COG5354 243 THTKSNKSYFGESNLYLLRITERSIP-VEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP----EQ 316 (561)
T ss_pred EeeecccceeccceEEEEeecccccc-eeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC----Cc
Confidence 111 1 2356888888854432 2225578999999999988777654 6778999999876 333322 23
Q ss_pred ceeeEEEecCCeEEEEEecC---CcEEEEEec
Q 019482 290 SIALVEFCPTQRVVLTASKE---WGAMITKLT 318 (340)
Q Consensus 290 ~i~~~~~~~~~~~l~~~~~d---g~i~iw~~~ 318 (340)
.-+.+.|+|.+++++.++-| |.+-+|+..
T Consensus 317 ~rNT~~fsp~~r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 317 KRNTIFFSPHERYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred ccccccccCcccEEEEecCCccccceEEeccC
Confidence 45667788888888887765 567777653
No 271
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=8.6e-11 Score=97.70 Aligned_cols=244 Identities=13% Similarity=0.084 Sum_probs=165.9
Q ss_pred eeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-----------CC
Q 019482 66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----------DG 134 (340)
Q Consensus 66 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg 134 (340)
-+-+.|||.|.||++-...| |.+|--.+-....++. | ..|.-+.|||..+||++-+. ..
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~--------H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY--------H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc--------C-CCceeeecCCccceEEEecCCccccCcccCCCc
Confidence 45689999999999999999 9999765554444432 3 56888999999999998652 25
Q ss_pred cEEEEeCCCCceeeccccCcc---ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCc
Q 019482 135 HLRIMHWPSLRIILDEPKAHK---SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (340)
Q Consensus 135 ~i~~~d~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (340)
.++|||+.+|.....+....+ .-.-+.||.|++++|--.. .+|.||+..+-.++..-. -.-..|....|+|.+..
T Consensus 283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks-lki~gIr~FswsP~~~l 360 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS-LKISGIRDFSWSPTSNL 360 (698)
T ss_pred eEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc-cCCccccCcccCCCcce
Confidence 699999999988777655332 2234789999999988765 579999977643332211 12235889999999875
Q ss_pred ceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeC----------CCcEEEEeccCceEeec
Q 019482 212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK----------DGDICVVDVKKMEINHW 281 (340)
Q Consensus 212 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~ 281 (340)
+.+..--+...-..+.+..+.+++.++....+.-.-..+-|..+|.+|+.--. --.+.|+.++.......
T Consensus 361 lAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve 440 (698)
T KOG2314|consen 361 LAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVE 440 (698)
T ss_pred EEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCce
Confidence 32211111222345677777777777766666655567888889999986421 12355666655443322
Q ss_pred ccccccccceeeEEEecCCeEEEEEecC---CcEEEEEec-CCCCC
Q 019482 282 SKRLHLGTSIALVEFCPTQRVVLTASKE---WGAMITKLT-VPADW 323 (340)
Q Consensus 282 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iw~~~-~~~~~ 323 (340)
. ......|...+|-|.|..+++-+.. .++.+|.++ .+..+
T Consensus 441 ~--velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~ 484 (698)
T KOG2314|consen 441 V--VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKP 484 (698)
T ss_pred e--eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCch
Confidence 2 1224689999999999877765543 578899888 44443
No 272
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.41 E-value=2.3e-09 Score=99.72 Aligned_cols=289 Identities=13% Similarity=0.110 Sum_probs=178.4
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEE-----ecCCCCeeEEEEcCCCCeEE
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF-----DESEGDPMTIAVNPSGDDFV 79 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~ 79 (340)
.++...+|.+..+ ..+++++.. .....+.+-.+..... ......+ ....+.|.++.|-++...++
T Consensus 22 ~~~~~~~~d~~sd-~i~~~~~~~----~~~~~i~~~~~~~~~~-----~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~ 91 (928)
T PF04762_consen 22 LPITATAFDSDSD-SIYFVLGPN----EIDYVIELDRFSQDGS-----VEVLASWDAPLPDDPNDKIVSFQYLADSESLC 91 (928)
T ss_pred cccceEEEecCCC-eEEEEECCC----CcceEEEEEeeccCCc-----eeEEEeccccCCcCCCCcEEEEEeccCCCcEE
Confidence 4577788887554 344554532 2223455555543331 1111112 13456799999999999999
Q ss_pred EEecCCCEEEE----EecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC-------------
Q 019482 80 CSTTNGGCKLF----EVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP------------- 142 (340)
Q Consensus 80 ~~~~d~~i~iw----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~------------- 142 (340)
.+..+|.|.+. +...... ...+ .-...|.+++||||...|+.++.++++.+.+-.
T Consensus 92 ~~~~~Gdi~~~~~~~~~~~~~~--E~VG------~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~ 163 (928)
T PF04762_consen 92 IALASGDIILVREDPDPDEDEI--EIVG------SVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDD 163 (928)
T ss_pred EEECCceEEEEEccCCCCCcee--EEEE------EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccc
Confidence 99999999999 4443332 1111 134789999999999999999989888776421
Q ss_pred --C--------Cceeecccc------------------------CccceeEEEecCCCCeEEEeeC---C---CeEEEEE
Q 019482 143 --S--------LRIILDEPK------------------------AHKSVLDMDFSLDSEFLATTST---D---GSARIWK 182 (340)
Q Consensus 143 --~--------~~~~~~~~~------------------------~~~~i~~~~~~~~~~~l~~~~~---d---~~v~iwd 182 (340)
. |+.-..+.+ ....-..++|-.||+++|+.+. . ..++||+
T Consensus 164 ~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ 243 (928)
T PF04762_consen 164 FGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS 243 (928)
T ss_pred cCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC
Confidence 0 000000100 1123456889999999998874 2 5799999
Q ss_pred ccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee----ccCCCeeEEEECCCCCE
Q 019482 183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR----LLRKPASVLSISLDGKY 258 (340)
Q Consensus 183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~i~~~~~s~~~~~ 258 (340)
-+ |+...+-. ...+--.+++|.|.|..+.. .-.-.....|.+|.-+. -.-..+. .....+..+.|++|+..
T Consensus 244 Re-G~L~stSE-~v~gLe~~l~WrPsG~lIA~--~q~~~~~~~VvFfErNG-LrhgeF~l~~~~~~~~v~~l~Wn~ds~i 318 (928)
T PF04762_consen 244 RE-GELQSTSE-PVDGLEGALSWRPSGNLIAS--SQRLPDRHDVVFFERNG-LRHGEFTLRFDPEEEKVIELAWNSDSEI 318 (928)
T ss_pred CC-ceEEeccc-cCCCccCCccCCCCCCEEEE--EEEcCCCcEEEEEecCC-cEeeeEecCCCCCCceeeEEEECCCCCE
Confidence 54 66544433 33344568999999985211 11122345677776443 2222222 33567899999999999
Q ss_pred EEEeeCCCcEEEEeccCceE--eecccccccccceeeEEEecCC-eEEEEEecCCcEEEEEec
Q 019482 259 LAMGSKDGDICVVDVKKMEI--NHWSKRLHLGTSIALVEFCPTQ-RVVLTASKEWGAMITKLT 318 (340)
Q Consensus 259 l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iw~~~ 318 (340)
||+.-.|. |.+|-..+..- .+.+.... ...+..+.|+|.. ..|...+.+|.+..+++.
T Consensus 319 LAv~~~~~-vqLWt~~NYHWYLKqei~~~~-~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 319 LAVWLEDR-VQLWTRSNYHWYLKQEIRFSS-SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred EEEEecCC-ceEEEeeCCEEEEEEEEEccC-CCCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence 99987665 99999877542 22221111 3345669999955 456666666777666654
No 273
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.41 E-value=3.9e-12 Score=118.50 Aligned_cols=195 Identities=15% Similarity=0.225 Sum_probs=150.1
Q ss_pred CCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeecccc-CccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeE
Q 019482 111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW 189 (340)
Q Consensus 111 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~ 189 (340)
+-..|.++.=+|...+-++|+.||.+++|....++.+..... ....++.+.|+.+|+.+..+..||.+.+|... .++.
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~ 2285 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPY 2285 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccce
Confidence 346778888889888999999999999999887776655443 23689999999999999999999999999986 5555
Q ss_pred EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc-EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcE
Q 019482 190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDI 268 (340)
Q Consensus 190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 268 (340)
...+. |+.....+.|-.... +..-....++.+.+||..... .-..-..|.+..+++++-|..+.|++|+.+|.|
T Consensus 2286 ~s~qc-hnk~~~Df~Fi~s~~----~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2286 TSWQC-HNKALSDFRFIGSLL----ATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEV 2360 (2439)
T ss_pred ecccc-CCccccceeeeehhh----hccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcE
Confidence 55553 344577777766322 112233467889999975322 111227888999999999999999999999999
Q ss_pred EEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCC
Q 019482 269 CVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADW 323 (340)
Q Consensus 269 ~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 323 (340)
++||++..+..+.+.. +. ...++++|+..|.++||++..++..
T Consensus 2361 ~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred EEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchh
Confidence 9999998877765532 44 4578999999999999999887653
No 274
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=6.8e-10 Score=94.88 Aligned_cols=198 Identities=10% Similarity=0.013 Sum_probs=123.6
Q ss_pred CeeEEEEcCCCCe-EEEEecC---CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEc-cC--CCcEE
Q 019482 65 DPMTIAVNPSGDD-FVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GV--DGHLR 137 (340)
Q Consensus 65 ~v~~~~~~~~~~~-l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~--dg~i~ 137 (340)
......|+|||+. ++..+.+ ..|.++|+.+++..... . ..+......|+|||+.++.. +. +..|.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~-------~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 260 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-S-------SQGMLVVSDVSKDGSKLLLTMAPKGQPDIY 260 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-c-------CCCcEEeeEECCCCCEEEEEEccCCCcEEE
Confidence 6778999999985 5544333 46888888776543221 1 22445667899999877643 32 35688
Q ss_pred EEeCCCCceeeccccCccceeEEEecCCCCeEEEeeC-CC--eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE
Q 019482 138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (340)
Q Consensus 138 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (340)
++|+.+++.. .+..+........|+|||+.|+..+. .+ .|++.|+.+++......... ....|+|+|+.+.+
T Consensus 261 ~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~----~~~~~SPDG~~Ia~ 335 (419)
T PRK04043 261 LYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK----NNSSVSTYKNYIVY 335 (419)
T ss_pred EEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC----cCceECCCCCEEEE
Confidence 8898777643 33333332345689999998777663 23 68888887776643332111 13489999998532
Q ss_pred EEEEecC------CcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCC---cEEEEeccCceEe
Q 019482 215 FCTVQRG------DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG---DICVVDVKKMEIN 279 (340)
Q Consensus 215 ~~~~~~~------~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~i~d~~~~~~~ 279 (340)
.. ... ....|.+.|+.++... .+... .......|+|||+.|+..+.++ .+.+.++......
T Consensus 336 ~~--~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~ 405 (419)
T PRK04043 336 SS--RETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSF 405 (419)
T ss_pred EE--cCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeE
Confidence 21 111 1147899999887653 33322 2334588999999888765432 3667777654433
No 275
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=3.9e-10 Score=93.90 Aligned_cols=287 Identities=16% Similarity=0.140 Sum_probs=178.1
Q ss_pred eEEeeeeecCCCccEEEEcCCCCcc----cCCCceEEEEeCCCCCCcccCCeeeEEEec---CCCCeeEEEEcCCCCeEE
Q 019482 7 VTCGSWIKRPENVNLVVLGKSSRAS----SSPSVLEIFSFDPKTTSVYTSPLVTYVFDE---SEGDPMTIAVNPSGDDFV 79 (340)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~----~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~ 79 (340)
|.-+.|+|... .|+.++.....- .....+.||++. +......+.. ....-.-..||.|++++|
T Consensus 252 Vq~idfSP~Ek--YLVT~s~~p~~~~~~d~e~~~l~IWDI~--------tG~lkrsF~~~~~~~~~WP~frWS~DdKy~A 321 (698)
T KOG2314|consen 252 VQFIDFSPNEK--YLVTYSPEPIIVEEDDNEGQQLIIWDIA--------TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFA 321 (698)
T ss_pred ceeeecCCccc--eEEEecCCccccCcccCCCceEEEEEcc--------ccchhcceeccCCCccccceEEeccCCceeE
Confidence 55677777533 344433322211 123568888886 2222222222 111233478999999999
Q ss_pred EEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC-----CcEEEEeCCCCceeeccccCc
Q 019482 80 CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRIMHWPSLRIILDEPKAH 154 (340)
Q Consensus 80 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~ 154 (340)
.-..++ |.||+..+......... ....|....|+|.++.||.=... ..+.+..+.+++.+....-++
T Consensus 322 rm~~~s-isIyEtpsf~lld~Ksl-------ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn 393 (698)
T KOG2314|consen 322 RMTGNS-ISIYETPSFMLLDKKSL-------KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN 393 (698)
T ss_pred Eeccce-EEEEecCceeeeccccc-------CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecccee
Confidence 888776 99998766433211111 23578889999998888754321 346777777777665544443
Q ss_pred cceeEEEecCCCCeEEEee----------CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc
Q 019482 155 KSVLDMDFSLDSEFLATTS----------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA 224 (340)
Q Consensus 155 ~~i~~~~~~~~~~~l~~~~----------~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~ 224 (340)
-.=..+.|..+|.+|+.-- .=..+.|+.++......... .....+...+|-|.|....+ +.......
T Consensus 394 VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~v--i~g~~~k~ 470 (698)
T KOG2314|consen 394 VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAV--ISGNTVKN 470 (698)
T ss_pred eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEE--EEcccccc
Confidence 3334577888888887532 11246677776544322222 23457899999999997432 33333456
Q ss_pred eEEEEECCC-Cc---EEeeeeccCCCeeEEEECCCCCEEEEe---eCCCcEEEEeccCceEeecccccccccceeeEEEe
Q 019482 225 LLAVYDIST-WN---KIGHKRLLRKPASVLSISLDGKYLAMG---SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC 297 (340)
Q Consensus 225 ~i~i~d~~~-~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~ 297 (340)
++.+|.+.+ .. .+..+ .....+.+.|+|.|++++++ +..|.+.++|+.-......-...| ...+.+.|.
T Consensus 471 tvsfY~~e~~~~~~~lVk~~--dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh--~~at~veWD 546 (698)
T KOG2314|consen 471 TVSFYAVETNIKKPSLVKEL--DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH--FAATEVEWD 546 (698)
T ss_pred ceeEEEeecCCCchhhhhhh--cccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc--cccccceEC
Confidence 788888873 22 22222 23456889999999999886 457889999987544333322334 367889999
Q ss_pred cCCeEEEEEec------CCcEEEEEec
Q 019482 298 PTQRVVLTASK------EWGAMITKLT 318 (340)
Q Consensus 298 ~~~~~l~~~~~------dg~i~iw~~~ 318 (340)
|.|+|+++++. |..-+||++.
T Consensus 547 PtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 547 PTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred CCCCEEEEeeehhhhccccceEEEEee
Confidence 99999999986 4456777765
No 276
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.40 E-value=5.9e-11 Score=92.95 Aligned_cols=202 Identities=9% Similarity=0.168 Sum_probs=134.5
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
..|++++++.++ ...|+.|-.. +.+.-+.+..+-++.. .......|...|..+-|+-..+.+++.+.
T Consensus 68 P~~~~~~~y~~e---~~~L~vg~~n------gtvtefs~sedfnkm~----~~r~~~~h~~~v~~~if~~~~e~V~s~~~ 134 (404)
T KOG1409|consen 68 PSPCSAMEYVSE---SRRLYVGQDN------GTVTEFALSEDFNKMT----FLKDYLAHQARVSAIVFSLTHEWVLSTGK 134 (404)
T ss_pred CCCceEeeeecc---ceEEEEEEec------ceEEEEEhhhhhhhcc----hhhhhhhhhcceeeEEecCCceeEEEecc
Confidence 456778888873 3445555543 3466666654433321 22334569999999999988899999999
Q ss_pred CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC--CCceeeccccCccceeEEE
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP--SLRIILDEPKAHKSVLDMD 161 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~--~~~~~~~~~~~~~~i~~~~ 161 (340)
|..+.---.+.+.......-. ....++.+.-. +...|...|.|.+..+. .-..+.++.+|...+.+++
T Consensus 135 dk~~~~hc~e~~~~lg~Y~~~--------~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~ 204 (404)
T KOG1409|consen 135 DKQFAWHCTESGNRLGGYNFE--------TPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLK 204 (404)
T ss_pred ccceEEEeeccCCcccceEee--------ccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEE
Confidence 986554444444322221110 11122222211 55666667777666554 3456777888889999999
Q ss_pred ecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC
Q 019482 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (340)
Q Consensus 162 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 233 (340)
|.|....|.+|..|..+.+||+--.+-+......+...+..+...+.-+. +.+++.|+.|.+||.+.
T Consensus 205 Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~-----l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 205 WDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQ-----LISCGEDGGIVVWNMNV 271 (404)
T ss_pred EcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhee-----eeeccCCCeEEEEeccc
Confidence 99999999999999999999997655444333345566888877776666 78999999999999863
No 277
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=3.7e-12 Score=105.88 Aligned_cols=251 Identities=13% Similarity=0.095 Sum_probs=169.1
Q ss_pred eeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC
Q 019482 54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD 133 (340)
Q Consensus 54 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 133 (340)
.....+.||+..|..++--.+.+.+++++.|++|++|.++..........-......|..+|.++.|-.+.++++++ |
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D 803 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--D 803 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--c
Confidence 34456789999999998777888999999999999999975432211111111222488999999999998888765 7
Q ss_pred CcEEEEeCCCCceeecccc--CccceeEEEecC--CCCeEEEe-eCCCeEEEEEccCCeeEEEeec----CCCCceeeEE
Q 019482 134 GHLRIMHWPSLRIILDEPK--AHKSVLDMDFSL--DSEFLATT-STDGSARIWKTEDGVAWTFLTR----NSDEKIELCR 204 (340)
Q Consensus 134 g~i~~~d~~~~~~~~~~~~--~~~~i~~~~~~~--~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~----~~~~~v~~~~ 204 (340)
|.|.+||.--+..+..... .++.+..+..-| +...++.+ +...+|+++|.+..+-...++. ..++.+.+++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 8999999876665543322 122334444444 34444444 7889999999998876655542 2345688999
Q ss_pred EccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEE-EeccCceEeeccc
Q 019482 205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV-VDVKKMEINHWSK 283 (340)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~ 283 (340)
..+.|+. ++.+-..|.|.+.|.++|+.+...+........++ .|..+.++....|.++.+ |....+......+
T Consensus 884 Va~~GN~-----lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 884 VADKGNK-----LAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred eccCcch-----hhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence 9999998 78888899999999999998877776665555554 366677887778888888 8776665544332
Q ss_pred ccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482 284 RLHLGTSIALVEFCPTQRVVLTASKEWGAMITK 316 (340)
Q Consensus 284 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~ 316 (340)
... .+..-+ ..-|.-|+++.....+.||.
T Consensus 958 ppp--epahfl--qsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 958 PPP--EPAHFL--QSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred CCC--cchhhh--hccCceeEEeccCcEEEEEe
Confidence 111 111111 11244556665555556653
No 278
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.36 E-value=1.1e-11 Score=106.19 Aligned_cols=250 Identities=12% Similarity=0.088 Sum_probs=173.0
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCC-CeEEEEec
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCSTT 83 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~ 83 (340)
-.|-.+.|+|.+.....++ +.++..-.+|++.... ....++.+.+|...|+.+-|+|+. ..+++++.
T Consensus 68 w~vad~qws~h~a~~~wiV-------sts~qkaiiwnlA~ss-----~~aIef~lhghsraitd~n~~~q~pdVlatcsv 135 (1081)
T KOG0309|consen 68 WQVADVQWSPHPAKPYWIV-------STSNQKAIIWNLAKSS-----SNAIEFVLHGHSRAITDINFNPQHPDVLATCSV 135 (1081)
T ss_pred chhcceecccCCCCceeEE-------ecCcchhhhhhhhcCC-----ccceEEEEecCccceeccccCCCCCcceeeccc
Confidence 3466789999887777777 5556667788886433 456678899999999999999965 47889999
Q ss_pred CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc-eeeccccCccceeEEEe
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMDF 162 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~i~~~~~ 162 (340)
|-.+..||+++......... .-......++|+-....+.+.+....|++||++.+. +...+++|...|..++|
T Consensus 136 dt~vh~wd~rSp~~p~ys~~------~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~f 209 (1081)
T KOG0309|consen 136 DTYVHAWDMRSPHRPFYSTS------SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDF 209 (1081)
T ss_pred cccceeeeccCCCcceeeee------cccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHH
Confidence 99999999987653322211 122455678998744444455667789999998664 45566677778999999
Q ss_pred cC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC--------
Q 019482 163 SL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-------- 233 (340)
Q Consensus 163 ~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-------- 233 (340)
+. -...+.+++.|++|+.||..............+.++..-.+.|-|+-.++ .-.-.+..+.+++.++
T Consensus 210 nr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~---mp~~G~n~v~~~~c~n~d~e~n~~ 286 (1081)
T KOG0309|consen 210 NRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI---MPMVGGNMVPQLRCENSDLEWNVF 286 (1081)
T ss_pred hhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEe---ccccCCeeeeeccccchhhhhccc
Confidence 76 34568899999999999987654333332234456777788887765322 2222223455544432
Q ss_pred --CcEEeeeeccCCCeeEEEECCCC----------CEEEEeeCCCcEEEEeccC
Q 019482 234 --WNKIGHKRLLRKPASVLSISLDG----------KYLAMGSKDGDICVVDVKK 275 (340)
Q Consensus 234 --~~~~~~~~~~~~~i~~~~~s~~~----------~~l~~~~~dg~i~i~d~~~ 275 (340)
.+++..+.+|...|....|-..+ -.|++=+.|..+++|-+..
T Consensus 287 ~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 287 DLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 35678888888777665553322 2588889999999997754
No 279
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.36 E-value=7.4e-10 Score=84.13 Aligned_cols=225 Identities=13% Similarity=0.092 Sum_probs=143.3
Q ss_pred CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCC-CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCC
Q 019482 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD 111 (340)
Q Consensus 33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 111 (340)
..+.+.+|....+...+ ..-..|...|.-+.=..+ ...+..++.|.++++.+++.+........ .
T Consensus 92 ~~g~fd~~~~~tn~~h~-------~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~-------~ 157 (344)
T KOG4532|consen 92 ASGQFDLFACNTNDGHL-------YQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN-------Q 157 (344)
T ss_pred ccceeeeecccCcccce-------eeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeec-------c
Confidence 55568888776333221 222334333322211111 23466678888888888876543222211 0
Q ss_pred CCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc-eeec--cccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee
Q 019482 112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILD--EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA 188 (340)
Q Consensus 112 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~ 188 (340)
.-.+.++.+++|++++++.+....|..|.+.... .+.. .....+.-.+..|+.....+|++..||++.|||++....
T Consensus 158 ~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 158 NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence 1237889999999999999999999999987543 2222 122233557889999999999999999999999987543
Q ss_pred E----EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC--------CCeeEEEECCCC
Q 019482 189 W----TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR--------KPASVLSISLDG 256 (340)
Q Consensus 189 ~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--------~~i~~~~~s~~~ 256 (340)
. ..-..++.+.+..+.|++-|..-+ ++..-.-+.+.+.|++++...+.+...+ ..|....|+.++
T Consensus 238 pm~~~sstrp~hnGa~R~c~Fsl~g~lDL---Lf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n 314 (344)
T KOG4532|consen 238 PMAEISSTRPHHNGAFRVCRFSLYGLLDL---LFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNEN 314 (344)
T ss_pred chhhhcccCCCCCCceEEEEecCCCcceE---EEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCC
Confidence 2 223456788999999999776533 4555667889999999987554443322 235666666666
Q ss_pred CEEEEeeCCCcEEEEeccC
Q 019482 257 KYLAMGSKDGDICVVDVKK 275 (340)
Q Consensus 257 ~~l~~~~~dg~i~i~d~~~ 275 (340)
..+.+.+++. +.=|++.+
T Consensus 315 ~s~~v~~e~~-~ae~ni~s 332 (344)
T KOG4532|consen 315 ESNDVKNELQ-GAEYNILS 332 (344)
T ss_pred cccccccchh-hheeeccc
Confidence 6666555432 44444433
No 280
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.35 E-value=2e-11 Score=97.47 Aligned_cols=167 Identities=16% Similarity=0.147 Sum_probs=121.6
Q ss_pred CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEc---cCCCcEEEEeC
Q 019482 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG---GVDGHLRIMHW 141 (340)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~~~d~ 141 (340)
.+..+..+|+++++|++..+....++++.......++... .......+.+.|..+......+ +....+.+|..
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~----~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDV----SCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeE----eecccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 3555677889999999988888888888765432222111 0112233445555544444444 33445566665
Q ss_pred CCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecC
Q 019482 142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG 221 (340)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 221 (340)
..+. ...+.+|-..++.++|+||+++++++.+|..|++-.......+..+..+|.+-|..++.-++.. +++++
T Consensus 140 ~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~------LlS~s 212 (390)
T KOG3914|consen 140 DSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL------LLSGS 212 (390)
T ss_pred cccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce------eeecC
Confidence 5533 3446688889999999999999999999999999888877778888877888999999988866 79999
Q ss_pred CcceEEEEECCCCcEEeeeec
Q 019482 222 DKALLAVYDISTWNKIGHKRL 242 (340)
Q Consensus 222 ~d~~i~i~d~~~~~~~~~~~~ 242 (340)
.|+++++||+++++.+..+..
T Consensus 213 GD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 213 GDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred CCCcEEEEecccCCcccccch
Confidence 999999999999998755543
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.35 E-value=4.1e-09 Score=99.89 Aligned_cols=209 Identities=13% Similarity=0.061 Sum_probs=136.7
Q ss_pred CCeeEEEEcCCCCeEEEEec-CCCEEEEEecCceeeeeeccccCC----------CCCCCCCeEEEEEec-CCCeEEEcc
Q 019482 64 GDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMP----------PLQDAGPQKCLSFSV-DGSRFAAGG 131 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~----------~~~~~~~v~~~~~~~-~~~~l~~~~ 131 (340)
.....++++++++.|+++.. ++.|+++|+.++... .+...... ....-.....++++| ++..+++.+
T Consensus 624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~ 702 (1057)
T PLN02919 624 NRPQGLAYNAKKNLLYVADTENHALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA 702 (1057)
T ss_pred CCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence 35789999998887666554 467999998765432 22110000 000012346899999 566667777
Q ss_pred CCCcEEEEeCCCCceeecc--------cc------CccceeEEEecCCCCeE-EEeeCCCeEEEEEccCCeeEEEee---
Q 019482 132 VDGHLRIMHWPSLRIILDE--------PK------AHKSVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAWTFLT--- 193 (340)
Q Consensus 132 ~dg~i~~~d~~~~~~~~~~--------~~------~~~~i~~~~~~~~~~~l-~~~~~d~~v~iwd~~~~~~~~~~~--- 193 (340)
.++.|++||..++...... .+ .-.....++++|+++.| ++-+.++.|++||++++.......
T Consensus 703 ~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~ 782 (1057)
T PLN02919 703 GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDP 782 (1057)
T ss_pred CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccc
Confidence 7889999998766432110 00 01235679999998854 455567899999998765321110
Q ss_pred ---------cCC--------CCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec-------------c
Q 019482 194 ---------RNS--------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-------------L 243 (340)
Q Consensus 194 ---------~~~--------~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-------------~ 243 (340)
+.. -.....++++++|.. .++...++.|++||..++........ .
T Consensus 783 ~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~L-----YVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~ 857 (1057)
T PLN02919 783 TFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQI-----YVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQ 857 (1057)
T ss_pred ccCcccccccCCCCchhhhhccCCceeeEeCCCcE-----EEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccc
Confidence 000 012468899999974 56778899999999987765422211 1
Q ss_pred CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE
Q 019482 244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI 278 (340)
Q Consensus 244 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 278 (340)
-.....++++++|+.+++-+.++.|++||+.+++.
T Consensus 858 l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 858 LSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred cCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 12467899999999888888899999999988764
No 282
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=2.5e-10 Score=98.66 Aligned_cols=279 Identities=13% Similarity=0.082 Sum_probs=183.4
Q ss_pred EEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCC------------
Q 019482 8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG------------ 75 (340)
Q Consensus 8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------------ 75 (340)
.++.|+|. .++|+|++.. +.+.+.- +......++.|...|+.+.|.|..
T Consensus 19 ~A~Dw~~~----GLiAygshsl-------V~VVDs~--------s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~ 79 (1062)
T KOG1912|consen 19 NAADWSPS----GLIAYGSHSL-------VSVVDSR--------SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQ 79 (1062)
T ss_pred cccccCcc----ceEEEecCce-------EEEEehh--------hhhhhhccccCccceeEEEeccCCCchhccCccccc
Confidence 46788873 4788777522 3333322 233345567799999999998731
Q ss_pred CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec---CC-CeEEEccCCCcEEEEeCCCCceeeccc
Q 019482 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV---DG-SRFAAGGVDGHLRIMHWPSLRIILDEP 151 (340)
Q Consensus 76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~ 151 (340)
-.||++...|.|.+||.........+. ++..++..++|-+ +. ..|++-.....+.+|+..+|+...+..
T Consensus 80 lliAsaD~~GrIil~d~~~~s~~~~l~-------~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 80 LLIASADISGRIILVDFVLASVINWLS-------HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD 152 (1062)
T ss_pred eeEEeccccCcEEEEEehhhhhhhhhc-------CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc
Confidence 257788888999999998776554443 2567888899877 33 466666777899999999999999888
Q ss_pred cCccceeEEEecC-CCCeEEEeeCCCeEEEEEccC-------CeeEEEeecCCCC-------------------------
Q 019482 152 KAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTED-------GVAWTFLTRNSDE------------------------- 198 (340)
Q Consensus 152 ~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~-------~~~~~~~~~~~~~------------------------- 198 (340)
..+....|+.+.| |.+.+..-+..|.+.+-+.-. ++..+ +...+..
T Consensus 153 ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q-I~sd~Sdl~~lere~at~ns~ts~~~sa~fit 231 (1062)
T KOG1912|consen 153 YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ-ITSDHSDLAHLERETATGNSTTSTPASAYFIT 231 (1062)
T ss_pred cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEE-EecCccchhhhhhhhhccccccCCCcchhHHH
Confidence 8888888999999 777777766778877776532 22211 1111100
Q ss_pred ceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCC--CEEEEeeCCCcEEEEeccCc
Q 019482 199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG--KYLAMGSKDGDICVVDVKKM 276 (340)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~ 276 (340)
....++|+|.-+.. +.......+.++|++-..++.......+.+.-+.+-|++ ..|++...||.+.+|-.+..
T Consensus 232 y~a~faf~p~~rn~-----lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~ 306 (1062)
T KOG1912|consen 232 YCAQFAFSPHWRNI-----LFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEE 306 (1062)
T ss_pred HHHhhhcChhhhce-----EEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeecc
Confidence 01135677776652 333346779999999888888887777777778887765 57899999999999976541
Q ss_pred e----------------EeecccccccccceeeEEEecC-CeEEEEEecCCcEEEEEecC
Q 019482 277 E----------------INHWSKRLHLGTSIALVEFCPT-QRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 277 ~----------------~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iw~~~~ 319 (340)
. ....+.... ...+....-.|. ...++.--.+|...+|.+..
T Consensus 307 ~~~f~~~~~~l~~dl~~Q~~~vr~m~-~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~ 365 (1062)
T KOG1912|consen 307 PTEFKKPNASLSMDLGEQVHVVRPME-EFRPVIGASCPSTPSALAVLYSSGDSTFWQLSN 365 (1062)
T ss_pred CccccccchhhccccccceEEEeech-hcccceeecCCCChhhhhhhhhcchhHHHhhhc
Confidence 1 111111111 122233333454 34444455567788888873
No 283
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.33 E-value=1.8e-10 Score=89.30 Aligned_cols=253 Identities=15% Similarity=0.152 Sum_probs=160.4
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCC------------CCeeEEE
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE------------GDPMTIA 70 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~ 70 (340)
....|+++.|.. .+.++++|..+|. +.+|.-...... +.....++++|+ ..|+.+.
T Consensus 25 ead~ItaVefd~---tg~YlatGDkgGR------Vvlfer~~s~~c---eykf~teFQshe~EFDYLkSleieEKin~I~ 92 (460)
T COG5170 25 EADKITAVEFDE---TGLYLATGDKGGR------VVLFEREKSYGC---EYKFFTEFQSHELEFDYLKSLEIEEKINAIE 92 (460)
T ss_pred ccceeeEEEecc---ccceEeecCCCce------EEEeeccccccc---chhhhhhhcccccchhhhhhccHHHHhhhee
Confidence 456789999987 5578888886554 777754422211 111112344444 3488899
Q ss_pred EcCCCC--eEEEEecCCCEEEEEecCceee----------------------eee--------------ccccCCCCCCC
Q 019482 71 VNPSGD--DFVCSTTNGGCKLFEVYGGATD----------------------INL--------------LAKKMPPLQDA 112 (340)
Q Consensus 71 ~~~~~~--~l~~~~~d~~i~iw~~~~~~~~----------------------~~~--------------~~~~~~~~~~~ 112 (340)
|..++. .++..+.|.+|++|.+...... ..+ .......-.|.
T Consensus 93 w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~ 172 (460)
T COG5170 93 WFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHP 172 (460)
T ss_pred eecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccce
Confidence 876543 5677788999999998654210 000 00001112355
Q ss_pred CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc---eeeccccCc-----cceeEEEecC-CCCeEEEeeCCCeEEEEEc
Q 019482 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR---IILDEPKAH-----KSVLDMDFSL-DSEFLATTSTDGSARIWKT 183 (340)
Q Consensus 113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~-----~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~ 183 (340)
-.+.++.|+.|.+.++++ .|-.|.+|+++-.. .+..+.++. .-|++..|+| ..+.+...+..|.|++-|+
T Consensus 173 yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~Dl 251 (460)
T COG5170 173 YHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDL 251 (460)
T ss_pred eEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhh
Confidence 567889999888888776 47789999986432 222333333 3588999999 4556777777899999999
Q ss_pred cCCeeE------EEee---------cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc-EEeeeeccC---
Q 019482 184 EDGVAW------TFLT---------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLLR--- 244 (340)
Q Consensus 184 ~~~~~~------~~~~---------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~--- 244 (340)
++.... .... ..--..|..+.|+++|++ +.+..-.++++||.+..+ ++.+...|.
T Consensus 252 Rq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngry------IlsRdyltvkiwDvnm~k~pikTi~~h~~l~ 325 (460)
T COG5170 252 RQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRY------ILSRDYLTVKIWDVNMAKNPIKTIPMHCDLM 325 (460)
T ss_pred hhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcE------EEEeccceEEEEecccccCCceeechHHHHH
Confidence 853211 1110 011235788999999995 444556789999998654 555554332
Q ss_pred ---------CCe---eEEEECCCCCEEEEeeCCCcEEEEecc
Q 019482 245 ---------KPA---SVLSISLDGKYLAMGSKDGDICVVDVK 274 (340)
Q Consensus 245 ---------~~i---~~~~~s~~~~~l~~~~~dg~i~i~d~~ 274 (340)
..| ..+.||-|.+.+++|+..+..-+|-..
T Consensus 326 ~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 326 DELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred HHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 122 357888899999999988888887643
No 284
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.33 E-value=2.4e-10 Score=86.34 Aligned_cols=212 Identities=12% Similarity=0.124 Sum_probs=124.9
Q ss_pred eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCC
Q 019482 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG 85 (340)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~ 85 (340)
+|+.+.+.-+ ..++.|...+...+-|..+....++........+.. .+..|.++-.+-+.+--++.++++..||
T Consensus 38 ~~~~~~~v~~----~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~--~~a~~sep~p~~~~s~~~t~V~~~~~dg 111 (319)
T KOG4714|consen 38 KLSKVSLSAE----YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFK--VLAKNSEIDPNDACTMTDNRVCIGYADG 111 (319)
T ss_pred EEEEeechhh----heeecccchhheeeeccceEEEechhhcccCcCcee--eeeccCCCCCcccccccCCceEecCCCc
Confidence 3555555542 224444444433444455555444433333223333 2335555444444444577899999999
Q ss_pred CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-----CCcEEEEeCCCCceeeccccCccceeEE
Q 019482 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----DGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (340)
Q Consensus 86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~~~~~~~~~~~~~~i~~~ 160 (340)
.+.+++.+.......... ..|.+. .+.++...++.+.++.. -+..+.|+++..+....-......|.++
T Consensus 112 ~~~v~s~~~~~~~~~~i~-----~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l 185 (319)
T KOG4714|consen 112 SLAVFSTDKDLALMSRIP-----SIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTAL 185 (319)
T ss_pred eEEEEechHHHhhhhhcc-----cccccc-cccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhh
Confidence 999999876221111110 011111 12223334444444321 2345566655433322222223358999
Q ss_pred EecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC
Q 019482 161 DFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (340)
Q Consensus 161 ~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 233 (340)
+-+| ..+.+++|+.||.+-+||.++......+...++.+++.+-|+|..... +++++.||.+..||..+
T Consensus 186 ~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~----Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 186 CSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH----LFTCSEDGSLWHWDAST 255 (319)
T ss_pred hCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh----eeEecCCCcEEEEcCCC
Confidence 9999 556778888999999999998866666666777889999999975443 78999999999999875
No 285
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.32 E-value=5.4e-11 Score=92.12 Aligned_cols=248 Identities=13% Similarity=0.120 Sum_probs=161.2
Q ss_pred CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCce-eeeeeccc----c-----CCCCCCCCCeEEEEEecCCC--eEEEc
Q 019482 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA-TDINLLAK----K-----MPPLQDAGPQKCLSFSVDGS--RFAAG 130 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~----~-----~~~~~~~~~v~~~~~~~~~~--~l~~~ 130 (340)
.+.|+++.|...|.|+++|...|.|.+|.-.... +..++..+ + .....-...|..+.|..++. .++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4569999999999999999999999999865443 11212111 0 01112235678888876543 45566
Q ss_pred cCCCcEEEEeCCCCc-------------------eee--------c---------------c-ccCccceeEEEecCCCC
Q 019482 131 GVDGHLRIMHWPSLR-------------------IIL--------D---------------E-PKAHKSVLDMDFSLDSE 167 (340)
Q Consensus 131 ~~dg~i~~~d~~~~~-------------------~~~--------~---------------~-~~~~~~i~~~~~~~~~~ 167 (340)
+.|.+|++|.+.... .+. + . ..|.-.|.++.|+.|.+
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 789999999874320 000 0 0 12233578899998888
Q ss_pred eEEEeeCCCeEEEEEccCCee---EEEeecCC----CCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE----
Q 019482 168 FLATTSTDGSARIWKTEDGVA---WTFLTRNS----DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---- 236 (340)
Q Consensus 168 ~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~---- 236 (340)
.++++. |-.|.+|+++-... +..++++. ...|++..|+|..... +..++..|.|++-|++....
T Consensus 186 t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~----fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 186 TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNV----FMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcce----EEEecCCCcEEehhhhhhhhccCc
Confidence 888764 78899999864322 22232222 2358899999987664 45667789999999984321
Q ss_pred --Ee----------eeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce-Eeeccccccc-----------ccc--
Q 019482 237 --IG----------HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME-INHWSKRLHL-----------GTS-- 290 (340)
Q Consensus 237 --~~----------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~-----------~~~-- 290 (340)
+. -+......|..+.|+++|+++++-+. -+++|||.+..+ ++..+ ..|. ...
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi-~~h~~l~~~l~d~YEnDaif 338 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTI-PMHCDLMDELNDVYENDAIF 338 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceee-chHHHHHHHHHhhhhcccee
Confidence 10 11112256888999999999998754 579999998754 33322 1221 122
Q ss_pred -eeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482 291 -IALVEFCPTQRVVLTASKEWGAMITKL 317 (340)
Q Consensus 291 -i~~~~~~~~~~~l~~~~~dg~i~iw~~ 317 (340)
-..+.|+-|...+++|+..+..-++-.
T Consensus 339 dkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 339 DKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred eeEEEEecCCcccccccccccceeeecc
Confidence 245788888889999998877777763
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=3.2e-11 Score=100.43 Aligned_cols=267 Identities=11% Similarity=0.098 Sum_probs=174.1
Q ss_pred ccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCC
Q 019482 31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ 110 (340)
Q Consensus 31 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 110 (340)
++.|.++++|.+.+.+.... +..+..+++.|+.+|.++.|-.+-++++++ ||.|.+||.--++...+.....
T Consensus 753 ASkDKTVKLWSik~EgD~~~-tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dap----- 824 (1034)
T KOG4190|consen 753 ASKDKTVKLWSIKPEGDEIG-TSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAP----- 824 (1034)
T ss_pred ccCCceEEEEEeccccCccc-cceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCc-----
Confidence 56788899999988776654 556788899999999999999888888754 6779999987776554333211
Q ss_pred CCCCeEEEEEec--CCCeEEE-ccCCCcEEEEeCCCCceeecc-----ccCccceeEEEecCCCCeEEEeeCCCeEEEEE
Q 019482 111 DAGPQKCLSFSV--DGSRFAA-GGVDGHLRIMHWPSLRIILDE-----PKAHKSVLDMDFSLDSEFLATTSTDGSARIWK 182 (340)
Q Consensus 111 ~~~~v~~~~~~~--~~~~l~~-~~~dg~i~~~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd 182 (340)
..+.+..+..-+ +...+.. ++...+|+++|.+..+..... .+....+.+++..+.|+.++.+-..|.+.+.|
T Consensus 825 k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LD 904 (1034)
T KOG4190|consen 825 KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILD 904 (1034)
T ss_pred ccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEe
Confidence 223333333334 3444444 477889999999877654333 23334688999999999999999999999999
Q ss_pred ccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEE-EECCCCcEEeeeeccCCCeeEEEECCCCCEEEE
Q 019482 183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAV-YDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (340)
Q Consensus 183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i-~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 261 (340)
.++|+.+..+.... .....++- |..+. ++....|.++.+ |..-.+....+.+....+..-+ ..-|.-+++
T Consensus 905 aR~G~vINswrpme-cdllqlaa-psdq~-----L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~ 975 (1034)
T KOG4190|consen 905 ARNGKVINSWRPME-CDLLQLAA-PSDQA-----LAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVT 975 (1034)
T ss_pred cCCCceeccCCccc-chhhhhcC-chhHH-----HHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEE
Confidence 99999887775322 12222221 33332 455666777777 8766665443333333332221 123556777
Q ss_pred eeCCCcEEEEeccC----ceEeecccccccccceeeEEEecCCeEEEEEecCCcEEE
Q 019482 262 GSKDGDICVVDVKK----MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI 314 (340)
Q Consensus 262 ~~~dg~i~i~d~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 314 (340)
+...+.+.+|--.. ...+..+......+..++++--|-+.-++.|...|.|.+
T Consensus 976 a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 976 AQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred eccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 76666777774211 111111212222356788888888888888888888865
No 287
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.31 E-value=1.9e-08 Score=80.51 Aligned_cols=216 Identities=13% Similarity=0.092 Sum_probs=140.9
Q ss_pred EEEEcC-CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEe-cCCCeEEEccCCCcEEEEeCCCCc
Q 019482 68 TIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFS-VDGSRFAAGGVDGHLRIMHWPSLR 145 (340)
Q Consensus 68 ~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~ 145 (340)
++.|.+ ++.++++--..+.|..|+..++...... . .....+++. +++. |+.+... .+.++|..+++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~---------~-~~~~G~~~~~~~g~-l~v~~~~-~~~~~d~~~g~ 71 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID---------L-PGPNGMAFDRPDGR-LYVADSG-GIAVVDPDTGK 71 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE---------S-SSEEEEEEECTTSE-EEEEETT-CEEEEETTTTE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe---------c-CCCceEEEEccCCE-EEEEEcC-ceEEEecCCCc
Confidence 678988 6666666667788999998887653311 1 226778888 6654 4444444 45666988875
Q ss_pred eeecccc-----CccceeEEEecCCCCeEEEeeCC--------CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcc
Q 019482 146 IILDEPK-----AHKSVLDMDFSLDSEFLATTSTD--------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP 212 (340)
Q Consensus 146 ~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d--------~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (340)
....... .....+.+++.|+|++.++.... |.|..++.. ++....... -...+.++|+|+++.+
T Consensus 72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 72 VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--LGFPNGIAFSPDGKTL 148 (246)
T ss_dssp EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--ESSEEEEEEETTSSEE
T ss_pred EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--cccccceEECCcchhe
Confidence 4332222 23468899999999977776543 557777776 554433332 2457899999999863
Q ss_pred eEEEEEecCCcceEEEEECCCCcE-E---eee-eccC--CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc
Q 019482 213 FLFCTVQRGDKALLAVYDISTWNK-I---GHK-RLLR--KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285 (340)
Q Consensus 213 ~~~~~~~~~~d~~i~i~d~~~~~~-~---~~~-~~~~--~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 285 (340)
.++.+..+.|..|++..... + ..+ .... +....+++..+|++.++....+.|.++|.+ ++.+..+...
T Consensus 149 ----yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p 223 (246)
T PF08450_consen 149 ----YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP 223 (246)
T ss_dssp ----EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S
T ss_pred ----eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC
Confidence 35677788899999863321 1 112 1222 236789999999988887788999999987 7777666543
Q ss_pred ccccceeeEEEe-cCCeEEEE
Q 019482 286 HLGTSIALVEFC-PTQRVVLT 305 (340)
Q Consensus 286 ~~~~~i~~~~~~-~~~~~l~~ 305 (340)
. ..+++++|. ++.+.|+.
T Consensus 224 ~--~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 224 V--PRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp S--SSEEEEEEESTTSSEEEE
T ss_pred C--CCEEEEEEECCCCCEEEE
Confidence 2 478999994 56554443
No 288
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.30 E-value=4.5e-09 Score=80.98 Aligned_cols=240 Identities=13% Similarity=0.105 Sum_probs=133.1
Q ss_pred CccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCcee
Q 019482 18 NVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT 97 (340)
Q Consensus 18 ~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~ 97 (340)
+++++| .-.++.|+|-.-..+-.... ..+ ...+...-.-+.++||||+..||.+...|+|+++|+.....
T Consensus 8 ~Gk~lA-------i~qd~~iEiRsa~Ddf~si~--~kc-qVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l 77 (282)
T PF15492_consen 8 DGKLLA-------ILQDQCIEIRSAKDDFSSII--GKC-QVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL 77 (282)
T ss_pred CCcEEE-------EEeccEEEEEeccCCchhee--EEE-ecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee
Confidence 456666 55677777776543322111 111 11222223467899999999999999999999999987543
Q ss_pred eeeeccccCCCCCCCCCeEEEEEecCC------CeEEEccCCCcEEEEeCCCC--c---eeec--ccc-CccceeEEEec
Q 019482 98 DINLLAKKMPPLQDAGPQKCLSFSVDG------SRFAAGGVDGHLRIMHWPSL--R---IILD--EPK-AHKSVLDMDFS 163 (340)
Q Consensus 98 ~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~~dg~i~~~d~~~~--~---~~~~--~~~-~~~~i~~~~~~ 163 (340)
. .+.........-...|..+.|.+.. ..|++...+|.++-|-+..+ + .... +.. ....|.++.++
T Consensus 78 f-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~ 156 (282)
T PF15492_consen 78 F-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYH 156 (282)
T ss_pred E-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEc
Confidence 2 2222211122234567777776532 24566667888888776322 1 1111 222 23489999999
Q ss_pred CCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc------eEEEEECCCCcEE
Q 019482 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA------LLAVYDISTWNKI 237 (340)
Q Consensus 164 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~------~i~i~d~~~~~~~ 237 (340)
|..++|+.|+.... +.+.. ......+++-..-.+..+.. .+....|. +..+|.+-+.+..
T Consensus 157 p~h~LLlVgG~~~~------~~~~s-----~a~~~GLtaWRiL~~~Pyyk---~v~~~~~~~~~~~~~~~~~~~~~~~~f 222 (282)
T PF15492_consen 157 PKHRLLLVGGCEQN------QDGMS-----KASSCGLTAWRILSDSPYYK---QVTSSEDDITASSKRRGLLRIPSFKFF 222 (282)
T ss_pred CCCCEEEEeccCCC------CCccc-----cccccCceEEEEcCCCCcEE---EccccCccccccccccceeeccceeee
Confidence 99888887764321 00000 00011122222221211100 01111111 1123333322222
Q ss_pred eeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecc
Q 019482 238 GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS 282 (340)
Q Consensus 238 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 282 (340)
.........|..|..||||..||+...+|.|.+|++.+.+.....
T Consensus 223 s~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 223 SRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred eccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 122234567999999999999999999999999999987766544
No 289
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.30 E-value=1.9e-08 Score=82.81 Aligned_cols=230 Identities=13% Similarity=0.088 Sum_probs=135.3
Q ss_pred CCCceEEEEeCCCCCCcccCCeeeEEEecC-------CCCeeEEEEcCCCCeEEEEec--CCCEEEEEecCceeeeeecc
Q 019482 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDES-------EGDPMTIAVNPSGDDFVCSTT--NGGCKLFEVYGGATDINLLA 103 (340)
Q Consensus 33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~~~~~--d~~i~iw~~~~~~~~~~~~~ 103 (340)
.+..|.+|+.. +.....++.-- -.....++++|||++|+.... +..|.+.|+.+.+...++..
T Consensus 75 ~~d~V~v~D~~--------t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 75 RTDYVEVIDPQ--------THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred CCCEEEEEECc--------cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence 45678888876 22222222211 223458999999999987763 57899999999887766533
Q ss_pred ccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC-Cceeec---c-ccCcccee-EEEecC-CCCeEEEeeCCC
Q 019482 104 KKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-LRIILD---E-PKAHKSVL-DMDFSL-DSEFLATTSTDG 176 (340)
Q Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~---~-~~~~~~i~-~~~~~~-~~~~l~~~~~d~ 176 (340)
. +...-...+++..++. +.||......+.+ ++.... + .....++. .-.|.+ +|+++..... |
T Consensus 147 p--------~~~~vy~t~e~~~~~~--~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G 215 (352)
T TIGR02658 147 P--------DCYHIFPTANDTFFMH--CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-G 215 (352)
T ss_pred C--------CCcEEEEecCCccEEE--eecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-C
Confidence 1 1112222222222211 2344433333222 111100 0 00000000 004455 7877776665 9
Q ss_pred eEEEEEccC-----CeeEEEeecC------CCCceeeEEEccCCCcceEEEEEec-----CCcceEEEEECCCCcEEeee
Q 019482 177 SARIWKTED-----GVAWTFLTRN------SDEKIELCRFSKDGTKPFLFCTVQR-----GDKALLAVYDISTWNKIGHK 240 (340)
Q Consensus 177 ~v~iwd~~~-----~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~-----~~d~~i~i~d~~~~~~~~~~ 240 (340)
+|.+.|+.. .+.+..+... ..+...-++++|+++.+|+...--+ ...+.|.++|..+++.+..+
T Consensus 216 ~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i 295 (352)
T TIGR02658 216 KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKI 295 (352)
T ss_pred eEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEE
Confidence 999999643 2333322211 1123445999999998553211000 12368999999999988777
Q ss_pred eccCCCeeEEEECCCCC-EEEEee-CCCcEEEEeccCceEeecc
Q 019482 241 RLLRKPASVLSISLDGK-YLAMGS-KDGDICVVDVKKMEINHWS 282 (340)
Q Consensus 241 ~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~i~d~~~~~~~~~~ 282 (340)
.. ...+..++++||++ +|++.+ .++.|.++|..+++.+..+
T Consensus 296 ~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 296 EL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred eC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 65 45788999999999 888776 5788999999999988876
No 290
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.30 E-value=1.2e-09 Score=83.10 Aligned_cols=239 Identities=11% Similarity=0.046 Sum_probs=152.7
Q ss_pred EEEEcC-----CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeC
Q 019482 68 TIAVNP-----SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHW 141 (340)
Q Consensus 68 ~~~~~~-----~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~ 141 (340)
.+.|.| ...+||.|+..|...+|...+.+....+-.. +...|.-+.=..+ .-.+..++.|.++++.++
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~------snn~v~~~~r~cd~~~~~~i~sndht~k~~~~ 145 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDV------SNNDVTLVKRYCDLKFPLNIASNDHTGKTMVV 145 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecc------cccchhhhhhhcccccceeeccCCcceeEEEE
Confidence 455655 3358999999999999999876644333221 1111111111111 224566778888888887
Q ss_pred CCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCC-eeEEE-eecCCCCceeeEEEccCCCcceEEEEEe
Q 019482 142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-VAWTF-LTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (340)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 219 (340)
+-+..........-.+.++++++|++++++.+....|-.|.+... +.+.. ........-.+..|+..... +++
T Consensus 146 ~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~-----FAv 220 (344)
T KOG4532|consen 146 SGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQ-----FAV 220 (344)
T ss_pred ecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcce-----EEE
Confidence 644322222111123789999999999999999999999998653 22222 22222333467788887776 788
Q ss_pred cCCcceEEEEECCCCcEE-----eeeeccCCCeeEEEECCCC--CEEEEeeCCCcEEEEeccCceEeeccc------ccc
Q 019482 220 RGDKALLAVYDISTWNKI-----GHKRLLRKPASVLSISLDG--KYLAMGSKDGDICVVDVKKMEINHWSK------RLH 286 (340)
Q Consensus 220 ~~~d~~i~i~d~~~~~~~-----~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~ 286 (340)
+..|+.+.|||++..... .....|.+.+..+.|+|.| .+|+..-.-+.+.+.|++++...+.+. ..|
T Consensus 221 ~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~ 300 (344)
T KOG4532|consen 221 VFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKH 300 (344)
T ss_pred EecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccc
Confidence 999999999999975422 2334577899999999865 355555556789999999876443331 122
Q ss_pred cccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 287 LGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 287 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
....|....|+.++..+.+.+++ .+.=|++.
T Consensus 301 ~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 301 NTQHIFGTNFNNENESNDVKNEL-QGAEYNIL 331 (344)
T ss_pred cccccccccccCCCcccccccch-hhheeecc
Confidence 23457888888888777766665 23334443
No 291
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.30 E-value=9.7e-09 Score=81.51 Aligned_cols=228 Identities=16% Similarity=0.112 Sum_probs=150.1
Q ss_pred CeeEEEEcC-CCCeEEEEecCC-CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-----CCcEE
Q 019482 65 DPMTIAVNP-SGDDFVCSTTNG-GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----DGHLR 137 (340)
Q Consensus 65 ~v~~~~~~~-~~~~l~~~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~ 137 (340)
....++.+| ....++.+-+-| ...+||..+++....+....... ---.-.||+||++|++.-. .|.|-
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRH-----FyGHg~fs~dG~~LytTEnd~~~g~G~Ig 80 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRH-----FYGHGVFSPDGRLLYTTENDYETGRGVIG 80 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCE-----EecCEEEcCCCCEEEEeccccCCCcEEEE
Confidence 345788899 555667777766 56789999888766554322111 1123689999999998643 47899
Q ss_pred EEeCC-CCceeeccccCccceeEEEecCCCCeEEEee------------------CCCeEEEEEccCCeeEEEee---cC
Q 019482 138 IMHWP-SLRIILDEPKAHKSVLDMDFSLDSEFLATTS------------------TDGSARIWKTEDGVAWTFLT---RN 195 (340)
Q Consensus 138 ~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------------------~d~~v~iwd~~~~~~~~~~~---~~ 195 (340)
|||.. +.+.+..+..+.-....+.+.|||+.|+.+. .+-++...|.++|+.+.+.. ..
T Consensus 81 Vyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~ 160 (305)
T PF07433_consen 81 VYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL 160 (305)
T ss_pred EEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc
Confidence 99998 5566666665554667888999998877763 12346667778888877643 23
Q ss_pred CCCceeeEEEccCCCcceEEEEEecCCc-------ceEEEEECCCCcEEeee-------eccCCCeeEEEECCCCCEEEE
Q 019482 196 SDEKIELCRFSKDGTKPFLFCTVQRGDK-------ALLAVYDISTWNKIGHK-------RLLRKPASVLSISLDGKYLAM 261 (340)
Q Consensus 196 ~~~~v~~~~~~~~~~~~~~~~~~~~~~d-------~~i~i~d~~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~ 261 (340)
+...+..+++.++|... +..-.. -.+-+++.. +.+..+ ....+.+-++++++++.++++
T Consensus 161 ~~lSiRHLa~~~~G~V~-----~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ 233 (305)
T PF07433_consen 161 HQLSIRHLAVDGDGTVA-----FAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAV 233 (305)
T ss_pred cccceeeEEecCCCcEE-----EEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEE
Confidence 44579999999998741 111111 112333322 222222 223467899999999988866
Q ss_pred ee-CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC
Q 019482 262 GS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE 309 (340)
Q Consensus 262 ~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 309 (340)
.+ ..+.+.+||..+++.+..... ..+..++-.+++ ++++.+..
T Consensus 234 tsPrGg~~~~~d~~tg~~~~~~~l----~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 234 TSPRGGRVAVWDAATGRLLGSVPL----PDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred ECCCCCEEEEEECCCCCEeecccc----CceeeeeecCCc-eEEeCCCc
Confidence 55 567899999999998876532 356777777776 55555443
No 292
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.29 E-value=3.2e-11 Score=103.56 Aligned_cols=261 Identities=12% Similarity=0.093 Sum_probs=171.5
Q ss_pred CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCC--CeEEEccCCCcEEEEe
Q 019482 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG--SRFAAGGVDGHLRIMH 140 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~~~d 140 (340)
.+.+.++..+|.|+-+|.+++-| +.+.|+...-.....+... ..-.|-.+.|+|.. .+-++......-.+|+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~-----tpw~vad~qws~h~a~~~wiVsts~qkaiiwn 97 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHI-----TPWQVADVQWSPHPAKPYWIVSTSNQKAIIWN 97 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeecc-----CcchhcceecccCCCCceeEEecCcchhhhhh
Confidence 45688999999999999999988 8888887643322222111 12345677888843 2334444445567888
Q ss_pred CCCC---ceeeccccCccceeEEEecCCC-CeEEEeeCCCeEEEEEccCCee-EEEeecCCCCceeeEEEccCCCcceEE
Q 019482 141 WPSL---RIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLF 215 (340)
Q Consensus 141 ~~~~---~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (340)
+... ..-..+.+|...|+.+.|+|.. ..+++++.|..+..||+++... +..+..-+ .....++|+.....
T Consensus 98 lA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~-s~asqVkwnyk~p~---- 172 (1081)
T KOG0309|consen 98 LAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR-SAASQVKWNYKDPN---- 172 (1081)
T ss_pred hhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccc-ccCceeeecccCcc----
Confidence 7532 2233344666789999999954 5799999999999999997654 33333223 34678899876665
Q ss_pred EEEecCCcceEEEEECCCCc-EEeeeeccCCCeeEEEECC-CCCEEEEeeCCCcEEEEeccCceEeecccccccccceee
Q 019482 216 CTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL 293 (340)
Q Consensus 216 ~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~ 293 (340)
+.+.+..+-|++||++.+. ++..++++...++.+.|.. ....+.+.+.|++|+.||............ ....+|+.
T Consensus 173 -vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v-tt~~piw~ 250 (1081)
T KOG0309|consen 173 -VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV-TTNFPIWR 250 (1081)
T ss_pred -hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec-cccCccee
Confidence 6777888889999999775 6667777777888888865 345678889999999999875432221111 11467888
Q ss_pred EEEecCC--eEEEEEecCCcEEEEEecCCC-------CCCCCcccccccccc
Q 019482 294 VEFCPTQ--RVVLTASKEWGAMITKLTVPA-------DWKGLSLPLLHSHSQ 336 (340)
Q Consensus 294 ~~~~~~~--~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~~~h~~~v 336 (340)
-.+.|-| .++.---.+..+.+++.+... ...++..+.+|.+.|
T Consensus 251 ~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V 302 (1081)
T KOG0309|consen 251 GRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVV 302 (1081)
T ss_pred ccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHH
Confidence 8888854 333333233345555444322 123455666776654
No 293
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=2.8e-09 Score=92.40 Aligned_cols=101 Identities=12% Similarity=0.086 Sum_probs=78.9
Q ss_pred EEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEe---------eCCCcEEEEeccCceEeec--cccc
Q 019482 217 TVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG---------SKDGDICVVDVKKMEINHW--SKRL 285 (340)
Q Consensus 217 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~---------~~dg~i~i~d~~~~~~~~~--~~~~ 285 (340)
++.|...|+|.++|+.++..-..+..|...|.++.|--+.+++-.+ +.-+.+.+-|+++|.-... +...
T Consensus 440 vAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~ 519 (1062)
T KOG1912|consen 440 VAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKP 519 (1062)
T ss_pred EEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCC
Confidence 5778888999999999888877888888889999997766555433 2235678889999764432 2223
Q ss_pred ccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 286 HLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 286 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
. ..+|+.+..+..++||+..-.|.-+.+|+++
T Consensus 520 d-espI~~irvS~~~~yLai~Fr~~plEiwd~k 551 (1062)
T KOG1912|consen 520 D-ESPIRAIRVSSSGRYLAILFRREPLEIWDLK 551 (1062)
T ss_pred C-cCcceeeeecccCceEEEEecccchHHHhhc
Confidence 3 5799999999999999999999999999995
No 294
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.26 E-value=2.3e-08 Score=77.18 Aligned_cols=231 Identities=12% Similarity=0.071 Sum_probs=128.0
Q ss_pred EEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceee
Q 019482 69 IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL 148 (340)
Q Consensus 69 ~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 148 (340)
++.+.+|+.||... |..|.|-..++.-.. ...+...+......-+-++||||+.+||.+...|+|+++|+...+ +.
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~s--i~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf 78 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSS--IIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LF 78 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchh--eeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eE
Confidence 56678888777655 444666655443111 001001111123445789999999999999999999999987533 32
Q ss_pred ccccCc-------cceeEEEecCC------CCeEEEeeCCCeEEEEEccCC-----eeEEE--eecCCCCceeeEEEccC
Q 019482 149 DEPKAH-------KSVLDMDFSLD------SEFLATTSTDGSARIWKTEDG-----VAWTF--LTRNSDEKIELCRFSKD 208 (340)
Q Consensus 149 ~~~~~~-------~~i~~~~~~~~------~~~l~~~~~d~~v~iwd~~~~-----~~~~~--~~~~~~~~v~~~~~~~~ 208 (340)
.+.... ..|..+.|-+. ...|++-..+|.++=|-+..+ +.... +..+....|.++.++|.
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 332222 35677777542 224666777888887776322 22222 33344567999999999
Q ss_pred CCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEE---CCCCCEEEEeeCCC------cEEEEeccCceEe
Q 019482 209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI---SLDGKYLAMGSKDG------DICVVDVKKMEIN 279 (340)
Q Consensus 209 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~---s~~~~~l~~~~~dg------~i~i~d~~~~~~~ 279 (340)
.+.+ ++.+.....-... ......+++-.. +|..+.+ +..+|+ +..+|.+-+.+..
T Consensus 159 h~LL----lVgG~~~~~~~~s-----------~a~~~GLtaWRiL~~~Pyyk~v-~~~~~~~~~~~~~~~~~~~~~~~~f 222 (282)
T PF15492_consen 159 HRLL----LVGGCEQNQDGMS-----------KASSCGLTAWRILSDSPYYKQV-TSSEDDITASSKRRGLLRIPSFKFF 222 (282)
T ss_pred CCEE----EEeccCCCCCccc-----------cccccCceEEEEcCCCCcEEEc-cccCccccccccccceeeccceeee
Confidence 8752 2333332210000 011111211111 2222211 111121 1223333332222
Q ss_pred ecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 280 HWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 280 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
.. .......|..+..||||+.||+...+|.+.+|+++.-.
T Consensus 223 s~--~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 223 SR--QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred ec--cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 11 12225689999999999999999999999999997543
No 295
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.22 E-value=3.6e-08 Score=84.28 Aligned_cols=222 Identities=9% Similarity=-0.010 Sum_probs=138.1
Q ss_pred CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccC
Q 019482 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153 (340)
Q Consensus 74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 153 (340)
++..++.++.++.+..+|..+++...+.... +.+.+.-.. .+..++.+..+|.+..||.++++.+.+....
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--------~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~ 174 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS--------SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRV 174 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC--------ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccC
Confidence 4677888888999999999888876654321 112111111 2446777778999999999999887665433
Q ss_pred ccce-----eEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCC---c------e-eeEEEccCCCcceEEEEE
Q 019482 154 HKSV-----LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE---K------I-ELCRFSKDGTKPFLFCTV 218 (340)
Q Consensus 154 ~~~i-----~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~---~------v-~~~~~~~~~~~~~~~~~~ 218 (340)
.... ..... .+..++.+..++.+..+|.++|+.+......... . + ....+ .+.. ++
T Consensus 175 ~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~-----vy 245 (377)
T TIGR03300 175 TPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQ-----VY 245 (377)
T ss_pred CCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCE-----EE
Confidence 2211 11111 1346777888899999999999876543311100 0 0 11111 1223 45
Q ss_pred ecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEec
Q 019482 219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298 (340)
Q Consensus 219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~ 298 (340)
..+.++.+..||..+++.+-..... ....+. .++..+++++.+|.+..+|..+++.+....... .....+...
T Consensus 246 ~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~-~~~~ssp~i-- 318 (377)
T TIGR03300 246 AVSYQGRVAALDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELK-YRQLTAPAV-- 318 (377)
T ss_pred EEEcCCEEEEEECCCCcEEEeeccC--CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcccccc-CCccccCEE--
Confidence 5667899999999999876544321 112222 256788888899999999999998765432111 112222222
Q ss_pred CCeEEEEEecCCcEEEEEecCC
Q 019482 299 TQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 299 ~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
.+..|++++.+|.+++++....
T Consensus 319 ~g~~l~~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 319 VGGYLVVGDFEGYLHWLSREDG 340 (377)
T ss_pred ECCEEEEEeCCCEEEEEECCCC
Confidence 3567888899999999886543
No 296
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.22 E-value=2.6e-08 Score=85.15 Aligned_cols=221 Identities=13% Similarity=0.109 Sum_probs=135.4
Q ss_pred CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCc
Q 019482 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH 154 (340)
Q Consensus 75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 154 (340)
+..++.+..++.+..||.++++...+....... ...... ...... + ..++.+..++.+..+|.++++.+.......
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~-~~~~~~-~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~ 220 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPA-LTLRGS-ASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVAL 220 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceeeEEccCCCc-eeecCC-CCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeecccc
Confidence 456777788899999999988876655321100 000000 011111 2 367778888999999999988765432110
Q ss_pred ----cc---eeEEEecC--CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcce
Q 019482 155 ----KS---VLDMDFSL--DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225 (340)
Q Consensus 155 ----~~---i~~~~~~~--~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~ 225 (340)
.. ...+.-+| .+..++.++.++.++.+|.++++.+...... ....... .+.. ++.++.++.
T Consensus 221 ~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~---~~~~p~~--~~~~-----vyv~~~~G~ 290 (377)
T TIGR03300 221 PKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS---SYQGPAV--DDNR-----LYVTDADGV 290 (377)
T ss_pred CCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC---CccCceE--eCCE-----EEEECCCCe
Confidence 00 11111112 3557777888999999999999876655421 1122222 3333 566678999
Q ss_pred EEEEECCCCcEEeeeeccCC-CeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccce-eeEEEecCCeEE
Q 019482 226 LAVYDISTWNKIGHKRLLRK-PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI-ALVEFCPTQRVV 303 (340)
Q Consensus 226 i~i~d~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l 303 (340)
+..+|..+++.+-....... ...+... .+..+++++.+|.|+++|..+++.+..... + ...+ .+..+ .++ .|
T Consensus 291 l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~-~-~~~~~~sp~~-~~~-~l 364 (377)
T TIGR03300 291 VVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKT-D-GSGIASPPVV-VGD-GL 364 (377)
T ss_pred EEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc-C-CCccccCCEE-ECC-EE
Confidence 99999999987654422221 2222222 467899999999999999999998876542 2 1122 22233 344 48
Q ss_pred EEEecCCcEEEE
Q 019482 304 LTASKEWGAMIT 315 (340)
Q Consensus 304 ~~~~~dg~i~iw 315 (340)
+.++.||.++.+
T Consensus 365 ~v~~~dG~l~~~ 376 (377)
T TIGR03300 365 LVQTRDGDLYAF 376 (377)
T ss_pred EEEeCCceEEEe
Confidence 888899988765
No 297
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.16 E-value=1.6e-09 Score=86.77 Aligned_cols=160 Identities=9% Similarity=0.033 Sum_probs=118.0
Q ss_pred ceeEEEecCCCCeEEEeeCCCeEEEEEccCCee----EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEEC
Q 019482 156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA----WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231 (340)
Q Consensus 156 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~ 231 (340)
....+..+|.++++|.+..+....+++.+.... +.... .....+.+.|..+.....+ ....++...+.+|..
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~--v~~~~~ai~~~~~~~sv~v--~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC--VPKRPTAISFIREDTSVLV--ADKAGDVYSFDILSA 139 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee--cccCcceeeeeeccceEEE--EeecCCceeeeeecc
Confidence 344566788889999988888877887765432 22222 1123455555555554221 345566677778877
Q ss_pred CCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCc
Q 019482 232 STWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWG 311 (340)
Q Consensus 232 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 311 (340)
..+.. ...-+|-.-+..++|+||+++|+++..|..|++-.+.....+..+..+| ..-|..++.-++ +.|+++|.|++
T Consensus 140 ~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH-~eFVS~isl~~~-~~LlS~sGD~t 216 (390)
T KOG3914|consen 140 DSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGH-KEFVSTISLTDN-YLLLSGSGDKT 216 (390)
T ss_pred cccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcccc-HhheeeeeeccC-ceeeecCCCCc
Confidence 76443 3556778889999999999999999999999999998888888888888 578999998764 56999999999
Q ss_pred EEEEEecCCCC
Q 019482 312 AMITKLTVPAD 322 (340)
Q Consensus 312 i~iw~~~~~~~ 322 (340)
+++|++...+.
T Consensus 217 lr~Wd~~sgk~ 227 (390)
T KOG3914|consen 217 LRLWDITSGKL 227 (390)
T ss_pred EEEEecccCCc
Confidence 99999986654
No 298
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.15 E-value=1.7e-07 Score=74.63 Aligned_cols=236 Identities=14% Similarity=0.108 Sum_probs=144.5
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec-
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT- 83 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~- 83 (340)
.+...++.+|... ..++++.+-+. ...+++.................|.|| -.|++||++|++.-.
T Consensus 5 ~RgH~~a~~p~~~--~avafaRRPG~-----~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd 71 (305)
T PF07433_consen 5 ARGHGVAAHPTRP--EAVAFARRPGT-----FALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTEND 71 (305)
T ss_pred ccccceeeCCCCC--eEEEEEeCCCc-----EEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccc
Confidence 3445566666433 56666665443 233343332111111122233456677 789999999998754
Q ss_pred ----CCCEEEEEec-CceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc------------------CCCcEEEEe
Q 019482 84 ----NGGCKLFEVY-GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG------------------VDGHLRIMH 140 (340)
Q Consensus 84 ----d~~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------------~dg~i~~~d 140 (340)
.|.|-|||.. +-+.+.++.. +.-....+.+.|||+.|+++. .+..+...|
T Consensus 72 ~~~g~G~IgVyd~~~~~~ri~E~~s-------~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld 144 (305)
T PF07433_consen 72 YETGRGVIGVYDAARGYRRIGEFPS-------HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLD 144 (305)
T ss_pred cCCCcEEEEEEECcCCcEEEeEecC-------CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEe
Confidence 4799999998 4444444332 333446688999998777763 233566677
Q ss_pred CCCCceeec--cc--cCccceeEEEecCCCCeEEEeeCCC-------eEEEEEccCCeeEEEeec------CCCCceeeE
Q 019482 141 WPSLRIILD--EP--KAHKSVLDMDFSLDSEFLATTSTDG-------SARIWKTEDGVAWTFLTR------NSDEKIELC 203 (340)
Q Consensus 141 ~~~~~~~~~--~~--~~~~~i~~~~~~~~~~~l~~~~~d~-------~v~iwd~~~~~~~~~~~~------~~~~~v~~~ 203 (340)
..+++.+.+ +. .|+..|..+++.++|..++..-..| -|.+++ .++.+..+.. ...+.+-++
T Consensus 145 ~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSI 222 (305)
T PF07433_consen 145 ARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSI 222 (305)
T ss_pred cCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEE
Confidence 778876655 32 2445899999999987666554333 233343 3333332221 224578999
Q ss_pred EEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEE
Q 019482 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV 270 (340)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 270 (340)
++++++..+ .+++-..+.+.+||..+++.+...... .+..++-.+++ ++++.+ .|.+..
T Consensus 223 a~~~~g~~i----a~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG-~G~~~~ 281 (305)
T PF07433_consen 223 AADRDGRLI----AVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSG-QGQLIR 281 (305)
T ss_pred EEeCCCCEE----EEECCCCCEEEEEECCCCCEeeccccC--ceeeeeecCCc-eEEeCC-CccEEE
Confidence 999999863 577778899999999999987655443 45667776666 555544 454433
No 299
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.13 E-value=3.8e-11 Score=105.18 Aligned_cols=220 Identities=15% Similarity=0.149 Sum_probs=158.0
Q ss_pred eEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC-
Q 019482 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG- 134 (340)
Q Consensus 56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg- 134 (340)
-..+..|...-+|++|+-+.+.|+.|+..|.|+++++.++........ |..+|+.+.=+.||..+++.+.-.
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~nc-------H~SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNC-------HQSAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccc-------cccccccccccCCcceeeeeccccC
Confidence 345778888999999999999999999999999999999876555443 888999999888998777655432
Q ss_pred -cEEEEeCCC-CceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCC---CCceeeEEEccCC
Q 019482 135 -HLRIMHWPS-LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS---DEKIELCRFSKDG 209 (340)
Q Consensus 135 -~i~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~ 209 (340)
...+|++.. +.....+ ..-.++.|+.....-+.|..-....+||++++.++.++.... ...-++..|+|+.
T Consensus 1167 PlsaLW~~~s~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred chHHHhccccccCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCc
Confidence 478899864 2222222 245678898755544455545678999999998877643211 1223678899998
Q ss_pred CcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccccc
Q 019482 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGT 289 (340)
Q Consensus 210 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 289 (340)
+. ++. || .+||++..+.++.+......+. =.|+|.|..++.-++ |||+++.+.++.....
T Consensus 1243 ~L-----Iln---dG--vLWDvR~~~aIh~FD~ft~~~~-G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~L---- 1302 (1516)
T KOG1832|consen 1243 TL-----ILN---DG--VLWDVRIPEAIHRFDQFTDYGG-GGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSL---- 1302 (1516)
T ss_pred ce-----Eee---Cc--eeeeeccHHHHhhhhhheeccc-ccccCCCceEEeech-----hhhhHHHHHHhcCccc----
Confidence 85 332 33 4899999887777766553333 359999999988765 8999999888766432
Q ss_pred ceeeEEEecCCeEEEEE
Q 019482 290 SIALVEFCPTQRVVLTA 306 (340)
Q Consensus 290 ~i~~~~~~~~~~~l~~~ 306 (340)
.-..+.|+..|..+...
T Consensus 1303 dqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1303 DQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred cceEEEeccCccchhhh
Confidence 23567788888765443
No 300
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.10 E-value=1.1e-07 Score=75.82 Aligned_cols=219 Identities=15% Similarity=0.076 Sum_probs=135.4
Q ss_pred CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEec
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~ 163 (340)
+|.|..||..+++......... ......+. ..+++..+++++.++.|..||..+|+.+..... ...+.... .
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-----~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~ 73 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-----GIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-V 73 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-----SCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-E
T ss_pred CCEEEEEECCCCCEEEEEECCC-----CCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-e
Confidence 5778899988888776663311 01222221 233566777778899999999999998876654 22222222 2
Q ss_pred CCCCeEEEeeCCCeEEEEEccCCeeEEEe-ecCCC--CceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee
Q 019482 164 LDSEFLATTSTDGSARIWKTEDGVAWTFL-TRNSD--EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (340)
Q Consensus 164 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 240 (340)
.++..++.++.++.++.+|.++|+.+... ..... ...........+.. ++.+..++.|..+|.++|+.+-..
T Consensus 74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDR-----LYVGTSSGKLVALDPKTGKLLWKY 148 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTE-----EEEEETCSEEEEEETTTTEEEEEE
T ss_pred ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCE-----EEEEeccCcEEEEecCCCcEEEEe
Confidence 23556666667889999999999998874 32211 11122222223554 556666999999999999987776
Q ss_pred eccCCC----------eeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCC
Q 019482 241 RLLRKP----------ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW 310 (340)
Q Consensus 241 ~~~~~~----------i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 310 (340)
...... +..-....++ .++.++.++.+.-+|+.+++.+. ... . . .+..+ ...++..|+.++.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~-~-~-~~~~~-~~~~~~~l~~~~~~~ 222 (238)
T PF13360_consen 149 PVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKP-I-S-GIYSL-PSVDGGTLYVTSSDG 222 (238)
T ss_dssp ESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EEC-S-S--ECEC-EECCCTEEEEEETTT
T ss_pred ecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-Eec-C-C-CccCC-ceeeCCEEEEEeCCC
Confidence 654322 1122222344 77777777764444999999663 222 1 1 23321 346677777777999
Q ss_pred cEEEEEecCCC
Q 019482 311 GAMITKLTVPA 321 (340)
Q Consensus 311 ~i~iw~~~~~~ 321 (340)
.+..||+...+
T Consensus 223 ~l~~~d~~tG~ 233 (238)
T PF13360_consen 223 RLYALDLKTGK 233 (238)
T ss_dssp EEEEEETTTTE
T ss_pred EEEEEECCCCC
Confidence 99999986543
No 301
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.09 E-value=1.4e-07 Score=86.09 Aligned_cols=204 Identities=12% Similarity=0.077 Sum_probs=135.1
Q ss_pred CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC
Q 019482 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (340)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~ 141 (340)
..+.|.++.|..++..++.+...|.|.+-|..+..... .+ .-...|.+++|+||.+.++..+.++++.+-.-
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei--vg------~vd~GI~aaswS~Dee~l~liT~~~tll~mT~ 138 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELEI--VG------NVDNGISAASWSPDEELLALITGRQTLLFMTK 138 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccceee--ee------eccCceEEEeecCCCcEEEEEeCCcEEEEEec
Confidence 34689999999999999999999999999887654322 11 13478999999999999998888777766532
Q ss_pred C----C-------------------Cceeecccc---------------------CccceeEEEecCCCCeEEEee----
Q 019482 142 P----S-------------------LRIILDEPK---------------------AHKSVLDMDFSLDSEFLATTS---- 173 (340)
Q Consensus 142 ~----~-------------------~~~~~~~~~---------------------~~~~i~~~~~~~~~~~l~~~~---- 173 (340)
. . |+.-..+.+ .++.=+.+.|--||+++++..
T Consensus 139 ~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~ 218 (1265)
T KOG1920|consen 139 DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESE 218 (1265)
T ss_pred cccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEecc
Confidence 0 0 000001110 011123589999999998843
Q ss_pred CC-CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC---cEEeeeeccCCCeeE
Q 019482 174 TD-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW---NKIGHKRLLRKPASV 249 (340)
Q Consensus 174 ~d-~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~ 249 (340)
.+ ..+++||.+ +..- .......+.-.+++|-|.|.. +..+-..+.|+.|.+|.-+.- .....+.....++..
T Consensus 219 ~~~RkirV~drE-g~Ln-s~se~~~~l~~~LsWkPsgs~--iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~ 294 (1265)
T KOG1920|consen 219 TGTRKIRVYDRE-GALN-STSEPVEGLQHSLSWKPSGSL--IAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEE 294 (1265)
T ss_pred CCceeEEEeccc-chhh-cccCcccccccceeecCCCCe--EeeeeecCCCCcEEEEecCCccccccccCCcccccchhe
Confidence 23 799999976 4332 222223344578999998885 222444556778999886532 222223333345899
Q ss_pred EEECCCCCEEEE---eeCCCcEEEEeccCce
Q 019482 250 LSISLDGKYLAM---GSKDGDICVVDVKKME 277 (340)
Q Consensus 250 ~~~s~~~~~l~~---~~~dg~i~i~d~~~~~ 277 (340)
++|+.++..|++ ......|++|-+.+..
T Consensus 295 L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 295 LAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred eeecCCCCceeeeecccccceEEEEEecCeE
Confidence 999999999998 4455569999887643
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.07 E-value=2.7e-06 Score=68.13 Aligned_cols=186 Identities=13% Similarity=0.105 Sum_probs=118.3
Q ss_pred eeEEEEc-CCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC--------CcE
Q 019482 66 PMTIAVN-PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--------GHL 136 (340)
Q Consensus 66 v~~~~~~-~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i 136 (340)
...+++. +++ .|+.+...+ +.++|+.+++......... ........+.+++.|+|++.++.... |.|
T Consensus 42 ~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~--~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v 117 (246)
T PF08450_consen 42 PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPD--GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSV 117 (246)
T ss_dssp EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEET--TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEE
T ss_pred CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccC--CCcccCCCceEEEcCCCCEEEEecCCCccccccccce
Confidence 7788888 564 555556655 6777988875433332210 00133567899999999977765432 457
Q ss_pred EEEeCCCCceeeccccCccceeEEEecCCCCeEE-EeeCCCeEEEEEccCCee----EEEeecCCC--CceeeEEEccCC
Q 019482 137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGVA----WTFLTRNSD--EKIELCRFSKDG 209 (340)
Q Consensus 137 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~v~iwd~~~~~~----~~~~~~~~~--~~v~~~~~~~~~ 209 (340)
..++.. ++.. .....-...+.++|+|+++.|+ +-+..+.|..+++..... ...+..... +..-.+++..+|
T Consensus 118 ~~~~~~-~~~~-~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G 195 (246)
T PF08450_consen 118 YRIDPD-GKVT-VVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG 195 (246)
T ss_dssp EEEETT-SEEE-EEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred EEECCC-CeEE-EEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC
Confidence 777766 4432 2333334578999999998765 556778899999863221 122211111 247789999999
Q ss_pred CcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEE-CCCCCEEEEee
Q 019482 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI-SLDGKYLAMGS 263 (340)
Q Consensus 210 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~~~ 263 (340)
.. .++....+.|.++|.+ ++.+..+......+++++| -|+.+.|++.+
T Consensus 196 ~l-----~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 196 NL-----WVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -E-----EEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CE-----EEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 84 3444467889999998 8888877777668999999 46766666544
No 303
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.05 E-value=6.7e-07 Score=71.25 Aligned_cols=187 Identities=19% Similarity=0.190 Sum_probs=121.0
Q ss_pred CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeecc-cc
Q 019482 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE-PK 152 (340)
Q Consensus 74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~ 152 (340)
++..+++++.++.+..||..+++.......... .... . ..++..++++..++.++.+|..+++..... ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~----~~~~----~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~ 105 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP----ISGA----P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLT 105 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC----GGSG----E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc----ccce----e-eecccccccccceeeeEecccCCcceeeeeccc
Confidence 566788778899999999999987766643211 0011 1 224456666667889999999999988773 32
Q ss_pred Ccc---ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCc---------e-eeEEEccCCCcceEEEEEe
Q 019482 153 AHK---SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK---------I-ELCRFSKDGTKPFLFCTVQ 219 (340)
Q Consensus 153 ~~~---~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~---------v-~~~~~~~~~~~~~~~~~~~ 219 (340)
... .........++..++.+..++.|..+|+++|+.+.......... + ..+.+ .++ . ++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~-----v~~ 178 (238)
T PF13360_consen 106 SSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI-SDG-R-----VYV 178 (238)
T ss_dssp SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC-CTT-E-----EEE
T ss_pred cccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE-ECC-E-----EEE
Confidence 211 12223333347788888889999999999999987776422110 1 12222 234 3 455
Q ss_pred cCCcce-EEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEee
Q 019482 220 RGDKAL-LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH 280 (340)
Q Consensus 220 ~~~d~~-i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 280 (340)
...++. +.+ |+.+++.+-... ......+ ..+++..|++++.++.|..||+++++..-
T Consensus 179 ~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 179 SSGDGRVVAV-DLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp ECCTSSEEEE-ETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred EcCCCeEEEE-ECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 565664 555 999998663222 2233331 34677888888899999999999998753
No 304
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=9.4e-10 Score=86.47 Aligned_cols=142 Identities=12% Similarity=0.149 Sum_probs=107.1
Q ss_pred CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEe
Q 019482 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMH 140 (340)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d 140 (340)
..+.|.++.|...++.+..|.++|.|..+|++....-. ......+-|...|+++..-. ++++|++.+.+|+|++||
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~---~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD 327 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGN---GWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYD 327 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCC---CcceEEEEcCcchhhhhhhccccceEeeccCcCceeEee
Confidence 46789999999989999999999999999998652211 11122234888999998877 788999999999999999
Q ss_pred CCCCce---eeccccCccc--eeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCC---CceeeEEEc
Q 019482 141 WPSLRI---ILDEPKAHKS--VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD---EKIELCRFS 206 (340)
Q Consensus 141 ~~~~~~---~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~---~~v~~~~~~ 206 (340)
++--++ +..+.+|-.. -.-+...+....++++++|...+||.++.++.+.++..... ..+.+++|.
T Consensus 328 ~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 328 LRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred ehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 987666 7777777642 23345566677888899999999999999999888764332 234455554
No 305
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.4e-08 Score=82.80 Aligned_cols=247 Identities=11% Similarity=0.021 Sum_probs=166.3
Q ss_pred CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-CCcEEEEe
Q 019482 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMH 140 (340)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d 140 (340)
|.+.|+.+..+ -.+++.+++.||.++.|--..-....-... ...|.+.+.+++.+-++.++.+++. |..++++|
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKh----FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKH----FRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFD 82 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhh----hHHHHHHHHhhhccccceeEeeccCcccceeEEE
Confidence 66667766554 457999999999999997654221111111 1136678889999999999999777 99999999
Q ss_pred CCCCceeecc--ccCccceeEEEecCCC-C-eEEEe-eCCCeEEEEEccCCe-eEEEeecCCCCceeeEEEccCCCcceE
Q 019482 141 WPSLRIILDE--PKAHKSVLDMDFSLDS-E-FLATT-STDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFL 214 (340)
Q Consensus 141 ~~~~~~~~~~--~~~~~~i~~~~~~~~~-~-~l~~~-~~d~~v~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (340)
+++-..+.-+ ....+.+. ...+|.. . .++.+ -.++.+.++|-.... +...+...|..+|..+.+.+.+..
T Consensus 83 vEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds--- 158 (558)
T KOG0882|consen 83 VENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS--- 158 (558)
T ss_pred eeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc---
Confidence 9876544222 11222222 2223321 1 23333 357899999976544 444555567789999999999986
Q ss_pred EEEEecCCcceEEEEECCC------CcE---------EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEe
Q 019482 215 FCTVQRGDKALLAVYDIST------WNK---------IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN 279 (340)
Q Consensus 215 ~~~~~~~~d~~i~i~d~~~------~~~---------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~ 279 (340)
..+....|.|..|.... .+. +..+........++.|+|+|..+.+-+.|..|++++.++++..
T Consensus 159 --~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 159 --AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred --eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 67777789999998873 111 1112223456789999999999999999999999999998766
Q ss_pred eccccc-------------------------------ccccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482 280 HWSKRL-------------------------------HLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 280 ~~~~~~-------------------------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
+.+... |....-+.+.|...|++|+.++-=| |+|.++...
T Consensus 237 qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn 307 (558)
T KOG0882|consen 237 QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTN 307 (558)
T ss_pred hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecC
Confidence 544210 1122446678888899998887653 677777643
No 306
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.00 E-value=3.7e-09 Score=80.04 Aligned_cols=146 Identities=13% Similarity=0.181 Sum_probs=95.8
Q ss_pred CCCeEEEeeCCCeEEEEEccCCeeE-EEeecCCCCceeeEEEccCCCcceEEEEEecCC------cceEEEEECCCCcEE
Q 019482 165 DSEFLATTSTDGSARIWKTEDGVAW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD------KALLAVYDISTWNKI 237 (340)
Q Consensus 165 ~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~ 237 (340)
.++.++++..||.+.+++.+.-..+ ..+...+.+ -.+.+....++ ++..+. -+..+.|+++..+.+
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~------~i~s~~~g~~n~~d~~~a~~~~p~~t~ 172 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGN------SILSGGCGNWNAQDNFYANTLDPIKTL 172 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeeccc------EEecCCcceEeeccceeeecccccccc
Confidence 4567999999999999998752111 111111111 11122222333 122222 334566776654433
Q ss_pred eeeeccCCCeeEEEECCC-CCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEec-CCeEEEEEecCCcEEEE
Q 019482 238 GHKRLLRKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP-TQRVVLTASKEWGAMIT 315 (340)
Q Consensus 238 ~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iw 315 (340)
.........+++++-+|. .+.+++|+.||.+.+||.+....+..+...| ..+++.+-|+| ++..|+++++||.+--|
T Consensus 173 ~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ah-k~~i~eV~FHpk~p~~Lft~sedGslw~w 251 (319)
T KOG4714|consen 173 IPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAH-KAEIWEVHFHPKNPEHLFTCSEDGSLWHW 251 (319)
T ss_pred cccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHh-hhhhhheeccCCCchheeEecCCCcEEEE
Confidence 222222345888999995 5678888999999999999988777777788 68999999999 45789999999998777
Q ss_pred Eec
Q 019482 316 KLT 318 (340)
Q Consensus 316 ~~~ 318 (340)
+-.
T Consensus 252 das 254 (319)
T KOG4714|consen 252 DAS 254 (319)
T ss_pred cCC
Confidence 765
No 307
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=2.7e-09 Score=84.00 Aligned_cols=151 Identities=9% Similarity=0.089 Sum_probs=109.2
Q ss_pred EEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC----ceeeccccCc
Q 019482 79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL----RIILDEPKAH 154 (340)
Q Consensus 79 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~----~~~~~~~~~~ 154 (340)
++.+.+-.+-+-|++++-. +.+...+.|.++.|...+++++.|.+.|.|..+|++.+ .......-|.
T Consensus 228 fs~G~sqqv~L~nvetg~~---------qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~ 298 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ---------QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHD 298 (425)
T ss_pred ecccccceeEEEEeecccc---------cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcC
Confidence 3444455588888877643 22234578899999988899999999999999999865 2222233567
Q ss_pred cceeEEEecC-CCCeEEEeeCCCeEEEEEccCCee---EEEeecCCCCc-eeeEEEccCCCcceEEEEEecCCcceEEEE
Q 019482 155 KSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVA---WTFLTRNSDEK-IELCRFSKDGTKPFLFCTVQRGDKALLAVY 229 (340)
Q Consensus 155 ~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~ 229 (340)
..|+++..-. ++++|++.+.+|+|++||++--++ +.+..+|.+.. ..-+-..+.... ++++++|...++|
T Consensus 299 Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~-----I~s~GdDcytRiW 373 (425)
T KOG2695|consen 299 SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGS-----IFSVGDDCYTRIW 373 (425)
T ss_pred cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccce-----EEEccCeeEEEEE
Confidence 7888888776 788999999999999999997766 77776544321 112223344333 6789999999999
Q ss_pred ECCCCcEEeeeecc
Q 019482 230 DISTWNKIGHKRLL 243 (340)
Q Consensus 230 d~~~~~~~~~~~~~ 243 (340)
.++.+..+.+.+..
T Consensus 374 sl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 374 SLDSGHLLCTIPFP 387 (425)
T ss_pred ecccCceeeccCCC
Confidence 99999988766544
No 308
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.94 E-value=7.5e-07 Score=81.58 Aligned_cols=204 Identities=12% Similarity=0.082 Sum_probs=132.9
Q ss_pred CCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEc----cC-
Q 019482 111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKT----ED- 185 (340)
Q Consensus 111 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~----~~- 185 (340)
....|.++.|..+.+.++.+..+|.|.+-|.++..... .-.-...|.+++|+||.+.++..+.++++.+-+- -.
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 44689999999999999999999999999887655332 2223458999999999999888887777765431 00
Q ss_pred ------------------CeeEEEeecC--------------------CCCceeeEEEccCCCcceEEEEEecCCcceEE
Q 019482 186 ------------------GVAWTFLTRN--------------------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227 (340)
Q Consensus 186 ------------------~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~ 227 (340)
|+....+.+. ....-.++.|--||+++.............|+
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 0100111100 01112458999999874333222233338999
Q ss_pred EEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEee---CCCcEEEEeccCce---EeecccccccccceeeEEEecCCe
Q 019482 228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS---KDGDICVVDVKKME---INHWSKRLHLGTSIALVEFCPTQR 301 (340)
Q Consensus 228 i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~i~d~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~ 301 (340)
+||.. +..-..-....+.-.+++|-|.|..+++.. .|+.|.+|.-+..+ ...... .. ..++..++|+.++.
T Consensus 226 V~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p-~d-e~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 226 VYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP-LD-EKEVEELAWNSNSD 302 (1265)
T ss_pred Eeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCc-cc-ccchheeeecCCCC
Confidence 99987 433222222233446799999999999863 45679999865422 211111 11 23499999999999
Q ss_pred EEEE---EecCCcEEEEEec
Q 019482 302 VVLT---ASKEWGAMITKLT 318 (340)
Q Consensus 302 ~l~~---~~~dg~i~iw~~~ 318 (340)
.||. ......|++|.+.
T Consensus 303 iLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred ceeeeecccccceEEEEEec
Confidence 9887 5455569999875
No 309
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.94 E-value=2.7e-08 Score=87.99 Aligned_cols=181 Identities=13% Similarity=0.105 Sum_probs=133.0
Q ss_pred CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCc
Q 019482 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH 154 (340)
Q Consensus 75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 154 (340)
+..++-|+-...+..+|+.+.+....... ..+.|.-+. .+++++.+|...|+|.+-|.++.+.+..+..|.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-------~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs 217 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNV-------SASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS 217 (1118)
T ss_pred Ccceeecchhhheeeeecccceeeeeeec-------cCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccc
Confidence 45666676666788888877665443321 112344444 367899999999999999999999999999999
Q ss_pred cceeEEEecCCCCeEEEeeC---------CCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcce
Q 019482 155 KSVLDMDFSLDSEFLATTST---------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225 (340)
Q Consensus 155 ~~i~~~~~~~~~~~l~~~~~---------d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~ 225 (340)
+.|.++... |+.|++++. |..|+|||++..+.+..+..+. ...-+.|.|.-... ++..+..|+
T Consensus 218 ~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~--~P~flrf~Psl~t~----~~V~S~sGq 289 (1118)
T KOG1275|consen 218 GSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY--GPQFLRFHPSLTTR----LAVTSQSGQ 289 (1118)
T ss_pred cceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCccccc--Cchhhhhcccccce----EEEEecccc
Confidence 999876665 899999874 5668999999887766665333 24667888864432 566777888
Q ss_pred EEEEECC---CC-cEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEe
Q 019482 226 LAVYDIS---TW-NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD 272 (340)
Q Consensus 226 i~i~d~~---~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 272 (340)
..+-|.. +. ..+..+......+..+.+|++++.++.|..+|.|.+|-
T Consensus 290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 8888843 32 12233444455699999999999999999999999997
No 310
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.1e-07 Score=76.71 Aligned_cols=244 Identities=11% Similarity=0.036 Sum_probs=141.0
Q ss_pred EEecCCCCeeEEEEcCCCC-eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCc
Q 019482 58 VFDESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGH 135 (340)
Q Consensus 58 ~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~ 135 (340)
.+.+|...|..++|+|..+ ++..++.+.+|+|.|+++......+.. + ..+++++|.-| .++|+.|...|.
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a-------~-~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA-------Y-NQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec-------c-CCceeeeeccCCcceeEEeccCce
Confidence 4667888899999999877 778899999999999999877665543 2 68899999885 458888999999
Q ss_pred EEEEeCCCCceeeccccC---ccceeEEEec------CCCCeEEEeeCCCeEEEEEccC--CeeEEEeecCCCCceeeEE
Q 019482 136 LRIMHWPSLRIILDEPKA---HKSVLDMDFS------LDSEFLATTSTDGSARIWKTED--GVAWTFLTRNSDEKIELCR 204 (340)
Q Consensus 136 i~~~d~~~~~~~~~~~~~---~~~i~~~~~~------~~~~~l~~~~~d~~v~iwd~~~--~~~~~~~~~~~~~~v~~~~ 204 (340)
|.+||++..+........ ..+|..++.- +.+.+++..+.+ +..|+..- +.....+.....+...+++
T Consensus 260 VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismq 337 (463)
T KOG1645|consen 260 VLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQ 337 (463)
T ss_pred EEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeee
Confidence 999999865533222211 1244444332 223444444332 45555432 2222223323334455555
Q ss_pred EccCCCcceEEEEEecCCc------ce-EEEEECCCCcEEeeee-cc-CCC------eeEEEECCCCCEEEE-eeCCCcE
Q 019482 205 FSKDGTKPFLFCTVQRGDK------AL-LAVYDISTWNKIGHKR-LL-RKP------ASVLSISLDGKYLAM-GSKDGDI 268 (340)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~d------~~-i~i~d~~~~~~~~~~~-~~-~~~------i~~~~~s~~~~~l~~-~~~dg~i 268 (340)
..+..+.+ +++.-.+ .. +---|.+.|.++...+ .+ +.. -..+.-.++.++++. +...+.+
T Consensus 338 y~~~snh~----l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~l 413 (463)
T KOG1645|consen 338 YHGVSNHL----LLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNEL 413 (463)
T ss_pred ecCccceE----EEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCccee
Confidence 55544442 1111110 00 1112223333322211 11 100 011222345555554 4556789
Q ss_pred EEEeccCceEeecccccccccceeeEEEec-CC-eEEEEEecCCcEEEEEecC
Q 019482 269 CVVDVKKMEINHWSKRLHLGTSIALVEFCP-TQ-RVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 269 ~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~~l~~~~~dg~i~iw~~~~ 319 (340)
.+||..+.+..+.+.. ..+|..+.... ++ .+|++-. |..++|+..+.
T Consensus 414 il~D~~s~evvQ~l~~---~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 414 ILQDPHSFEVVQTLAL---SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred EEeccchhheeeeccc---CcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 9999999999887754 35788877544 33 4565554 55788887653
No 311
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=1.6e-07 Score=82.10 Aligned_cols=172 Identities=12% Similarity=0.174 Sum_probs=119.3
Q ss_pred cEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeee
Q 019482 20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI 99 (340)
Q Consensus 20 ~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~ 99 (340)
.++++|...+. +.++..+... .+...|... .-+|.++++|+.||+|.|-.+.+.+...
T Consensus 50 ~~~~~GtH~g~------v~~~~~~~~~----------~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 50 KFFALGTHRGA------VYLTTCQGNP----------KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred ceeeeccccce------EEEEecCCcc----------ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 56788876554 8888776332 111123322 5689999999999999999988776544
Q ss_pred eeccccCCCCCCCCCeEEEEEecC-----CCeEEEccCCCcEEEEeCC--CCceeeccccCccceeEEEecCCCCeEEEe
Q 019482 100 NLLAKKMPPLQDAGPQKCLSFSVD-----GSRFAAGGVDGHLRIMHWP--SLRIILDEPKAHKSVLDMDFSLDSEFLATT 172 (340)
Q Consensus 100 ~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~~~d~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 172 (340)
... -..++.+++++|+ .+.+++|+..| +.++.-. ..+.........++|.++.|. |+++|-+
T Consensus 108 ~~d--------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWa 176 (846)
T KOG2066|consen 108 QYD--------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWA 176 (846)
T ss_pred eEe--------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEe
Confidence 332 3468999999997 56899999888 7777532 111111344455789999998 8899999
Q ss_pred eCCCeEEEEEccCCeeEEEeecCCC-----CceeeEEEccCCCcceEEEEEecCCcceEEEEECC
Q 019482 173 STDGSARIWKTEDGVAWTFLTRNSD-----EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (340)
Q Consensus 173 ~~d~~v~iwd~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~ 232 (340)
+.+| |++||+..++.+..+...+. .....+.|.++.+ +.-|...+|++..++
T Consensus 177 nd~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-------LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 177 NDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-------LVIGWGDSVKICSIK 233 (846)
T ss_pred cCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-------EEEecCCeEEEEEEe
Confidence 8766 99999999888877764442 1234677877766 333555668887777
No 312
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=2.9e-07 Score=80.62 Aligned_cols=183 Identities=16% Similarity=0.122 Sum_probs=132.0
Q ss_pred CCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEE
Q 019482 112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF 191 (340)
Q Consensus 112 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~ 191 (340)
...+.|++++ ++.|+.|+.+|.|++++... .. .....|... ..+|.++++|+.||+|.|-.+-+.+...+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 3566677775 56899999999999998653 32 233333322 66899999999999999999988888777
Q ss_pred eecCCCCceeeEEEccC-----CCcceEEEEEecCCcceEEEEECCC---CcEEeeeeccCCCeeEEEECCCCCEEEEee
Q 019482 192 LTRNSDEKIELCRFSKD-----GTKPFLFCTVQRGDKALLAVYDIST---WNKIGHKRLLRKPASVLSISLDGKYLAMGS 263 (340)
Q Consensus 192 ~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 263 (340)
+. ...++.+++++|+ .++ +++++..| +.++.-+- ...+ ......++|.++.| .|+++|-++
T Consensus 109 ~d--f~rpiksial~Pd~~~~~sk~-----fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W--~g~lIAWan 177 (846)
T KOG2066|consen 109 YD--FKRPIKSIALHPDFSRQQSKQ-----FVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKW--RGNLIAWAN 177 (846)
T ss_pred Ee--cCCcceeEEeccchhhhhhhh-----eeecCcce-EEEehhhhhcCccce-eeecCccceEEEEe--cCcEEEEec
Confidence 65 3457999999998 233 67888888 77776442 1222 34556789999999 577999998
Q ss_pred CCCcEEEEeccCceEeeccccccc----ccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 264 KDGDICVVDVKKMEINHWSKRLHL----GTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 264 ~dg~i~i~d~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
.+| |++||+.+.+.+..+...+. ..-...+.|.++.++++- ..-+|+|..++
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIG--W~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIG--WGDSVKICSIK 233 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEe--cCCeEEEEEEe
Confidence 887 99999999888776654441 112456788877664443 33468888887
No 313
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.90 E-value=7.8e-09 Score=56.44 Aligned_cols=37 Identities=16% Similarity=0.378 Sum_probs=34.8
Q ss_pred eeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEE
Q 019482 55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFE 91 (340)
Q Consensus 55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 91 (340)
+..++++|.+.|++++|+|++.+|++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4577899999999999999999999999999999997
No 314
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.87 E-value=3.3e-09 Score=93.46 Aligned_cols=255 Identities=13% Similarity=0.109 Sum_probs=165.8
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
..--+|++|+- +.+.++.|.. .+.|++|+.. +....-...+|.++|+-+.-+.+|..+++.+.
T Consensus 1101 ~~~fTc~afs~---~~~hL~vG~~------~Geik~~nv~--------sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss 1163 (1516)
T KOG1832|consen 1101 TALFTCIAFSG---GTNHLAVGSH------AGEIKIFNVS--------SGSMEESVNCHQSAVTLVEPSVDGSTQLTSSS 1163 (1516)
T ss_pred ccceeeEEeec---CCceEEeeec------cceEEEEEcc--------CccccccccccccccccccccCCcceeeeecc
Confidence 44568999998 3456777775 4559999998 55555567889999999999999997776544
Q ss_pred CC--CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCc----cce
Q 019482 84 NG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH----KSV 157 (340)
Q Consensus 84 d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~----~~i 157 (340)
-. ...+|++.+.-.... ....-.++.|+.....-+.|.......+||++++..+.++.... ..-
T Consensus 1164 ~S~PlsaLW~~~s~~~~~H----------sf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~ 1233 (1516)
T KOG1832|consen 1164 SSSPLSALWDASSTGGPRH----------SFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSN 1233 (1516)
T ss_pred ccCchHHHhccccccCccc----------cccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhc
Confidence 32 567999865221111 12345788998865555666666778999999998777644332 134
Q ss_pred eEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEE
Q 019482 158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI 237 (340)
Q Consensus 158 ~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~ 237 (340)
++..|+|+..+++- || .+||++..+.++.+..-. .-..-.|+|.|.. ++..+ -|||+++.+.+
T Consensus 1234 n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft--~~~~G~FHP~g~e-----VIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1234 NLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFT--DYGGGGFHPSGNE-----VIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred cccccCCCcceEee---Cc--eeeeeccHHHHhhhhhhe--ecccccccCCCce-----EEeec-----hhhhhHHHHHH
Confidence 77899998887763 44 479999887777765322 1234468999987 34333 38999998877
Q ss_pred eeeeccCCCeeEEEECCCCCEEEEeeC--C---------------CcEEEEeccCceEeecccccccccceeeEEEecCC
Q 019482 238 GHKRLLRKPASVLSISLDGKYLAMGSK--D---------------GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300 (340)
Q Consensus 238 ~~~~~~~~~i~~~~~s~~~~~l~~~~~--d---------------g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 300 (340)
+...... -+.+.|+..|..++..-. | ...+-||....+.+..+.. ...+..++-+|..
T Consensus 1297 h~VP~Ld--qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v---~R~~~Dlct~~~D 1371 (1516)
T KOG1832|consen 1297 HSVPSLD--QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV---DRCLLDLCTEPTD 1371 (1516)
T ss_pred hcCcccc--ceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeec---ccchhhhhcCCcc
Confidence 6655443 256788888877665420 0 1123333333333333321 2456666667766
Q ss_pred eEEEEEe
Q 019482 301 RVVLTAS 307 (340)
Q Consensus 301 ~~l~~~~ 307 (340)
.++..--
T Consensus 1372 ~~l~vIe 1378 (1516)
T KOG1832|consen 1372 SFLGVIE 1378 (1516)
T ss_pred ceEEEEe
Confidence 6665543
No 315
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.86 E-value=1.9e-05 Score=67.57 Aligned_cols=113 Identities=19% Similarity=0.265 Sum_probs=80.5
Q ss_pred ceeEEEecC-CCCeEEEe----eCCCe----EEEEEccCCe--eEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc
Q 019482 156 SVLDMDFSL-DSEFLATT----STDGS----ARIWKTEDGV--AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA 224 (340)
Q Consensus 156 ~i~~~~~~~-~~~~l~~~----~~d~~----v~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~ 224 (340)
...++.|+- +.+.+.+. +.+|. -.+|+....+ .+..........+.+++++|+.+. ++.|..||
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~k-----LvlGC~Dg 281 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDK-----LVLGCEDG 281 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccce-----EEEEecCC
Confidence 345677776 44445443 23443 3456665443 233333345567999999999998 88999999
Q ss_pred eEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC
Q 019482 225 LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (340)
Q Consensus 225 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 275 (340)
.|.+||...+... .....-..+.++|+|+|..+++|+..|.+.+||+.-
T Consensus 282 SiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 282 SIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred eEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 9999999876433 333345578899999999999999999999999854
No 316
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.86 E-value=6.4e-06 Score=70.83 Aligned_cols=221 Identities=12% Similarity=0.092 Sum_probs=133.4
Q ss_pred CCeEEEEecCCCEEEEEecCceeeeeeccccCC-CCC-CCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeecccc
Q 019482 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMP-PLQ-DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK 152 (340)
Q Consensus 75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 152 (340)
+..++.+..++.+..+|..+++........... ... ...++ . .+..++.++.+|.+..+|..+++.......
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~----v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~ 233 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPA----T--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRI 233 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCE----E--ECCEEEEEcCCCEEEEEEccCChhhheecc
Confidence 446677778888999999999877666432100 000 01111 1 123566677889999999998886654321
Q ss_pred Ccc-------ceeEEEecC--CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCc
Q 019482 153 AHK-------SVLDMDFSL--DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK 223 (340)
Q Consensus 153 ~~~-------~i~~~~~~~--~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d 223 (340)
... ....+.-+| .+..++.++.++.+..+|..+++.+-...... ...+.. .+.. ++..+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~---~~~~~~--~~~~-----vy~~~~~ 303 (394)
T PRK11138 234 SQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS---VNDFAV--DGGR-----IYLVDQN 303 (394)
T ss_pred ccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC---ccCcEE--ECCE-----EEEEcCC
Confidence 110 111122233 34567777789999999999998765543211 112222 2333 5666788
Q ss_pred ceEEEEECCCCcEEeeeeccC-CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccccccee-eEEEecCCe
Q 019482 224 ALLAVYDISTWNKIGHKRLLR-KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA-LVEFCPTQR 301 (340)
Q Consensus 224 ~~i~i~d~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~ 301 (340)
+.+..+|..+++.+-...... ....+... .+.++++++.+|.|..+|..+++.+....... ..+. +..+ .+.
T Consensus 304 g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~--~~~~s~P~~--~~~ 377 (394)
T PRK11138 304 DRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDS--SGFLSEPVV--ADD 377 (394)
T ss_pred CeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--CcceeCCEE--ECC
Confidence 999999999988654332211 11222222 35678889999999999999998876543221 1222 2222 234
Q ss_pred EEEEEecCCcEEEEEe
Q 019482 302 VVLTASKEWGAMITKL 317 (340)
Q Consensus 302 ~l~~~~~dg~i~iw~~ 317 (340)
.|+.++.||.++.++.
T Consensus 378 ~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 378 KLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEEeCCceEEEEeC
Confidence 6888899998887664
No 317
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.85 E-value=1.1e-08 Score=55.79 Aligned_cols=39 Identities=33% Similarity=0.360 Sum_probs=36.4
Q ss_pred CcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEe
Q 019482 234 WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD 272 (340)
Q Consensus 234 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 272 (340)
++++..+..|...|.+++|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356788999999999999999999999999999999997
No 318
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.85 E-value=4.9e-06 Score=70.27 Aligned_cols=237 Identities=14% Similarity=0.113 Sum_probs=134.5
Q ss_pred cCCCCeEEEE---------ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482 72 NPSGDDFVCS---------TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (340)
Q Consensus 72 ~~~~~~l~~~---------~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 142 (340)
|||+++++.. +..+.+.++|+.+++....... ...+....|+|+|+.++... ++.|.+.+..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--------~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~ 71 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--------PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLA 71 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--------ETTBSEEEE-SSSTEEEEEE-TTEEEEESST
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--------ccccccceeecCCCeeEEEe-cCceEEEECC
Confidence 5777776663 2235688999988764332211 35678899999999998875 6789999987
Q ss_pred CCceeeccccC-----------------ccceeEEEecCCCCeEEEeeCC-Ce---------------------------
Q 019482 143 SLRIILDEPKA-----------------HKSVLDMDFSLDSEFLATTSTD-GS--------------------------- 177 (340)
Q Consensus 143 ~~~~~~~~~~~-----------------~~~i~~~~~~~~~~~l~~~~~d-~~--------------------------- 177 (340)
+++..+..... -+.-..+-|+||+++|+....| ..
T Consensus 72 ~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~ 151 (353)
T PF00930_consen 72 TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKA 151 (353)
T ss_dssp TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BT
T ss_pred CCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCC
Confidence 76544322211 1123567899999998875432 11
Q ss_pred --------EEEEEccCCeeEE-Eee---cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec-cC
Q 019482 178 --------ARIWKTEDGVAWT-FLT---RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-LR 244 (340)
Q Consensus 178 --------v~iwd~~~~~~~~-~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~ 244 (340)
+.++|+.+++... ... ......+..+.|.+++..+++..+--......+.++|..++........ ..
T Consensus 152 G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~ 231 (353)
T PF00930_consen 152 GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD 231 (353)
T ss_dssp TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS
T ss_pred CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC
Confidence 3344554444321 111 1233457789999998854443333334455677888877654322222 22
Q ss_pred CCe---eEEEEC-CCCC-EEEEeeCCCc--EEEEeccCceEeeccccccccccee-eEEEecCCeEE-EEEecC--CcEE
Q 019482 245 KPA---SVLSIS-LDGK-YLAMGSKDGD--ICVVDVKKMEINHWSKRLHLGTSIA-LVEFCPTQRVV-LTASKE--WGAM 313 (340)
Q Consensus 245 ~~i---~~~~~s-~~~~-~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l-~~~~~d--g~i~ 313 (340)
..+ ....+. +++. ++.....+|. |.+++..++.... +..+ .-.|. -+.|+++++.| +++..+ +.-.
T Consensus 232 ~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~-lT~G--~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~ 308 (353)
T PF00930_consen 232 GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQ-LTSG--DWEVTSILGWDEDNNRIYFTANGDNPGERH 308 (353)
T ss_dssp SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEE-SS-S--SS-EEEEEEEECTSSEEEEEESSGGTTSBE
T ss_pred cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceec-cccC--ceeecccceEcCCCCEEEEEecCCCCCceE
Confidence 222 345554 6554 4555556665 5555666666443 3222 23564 46788876544 455543 4678
Q ss_pred EEEecCC
Q 019482 314 ITKLTVP 320 (340)
Q Consensus 314 iw~~~~~ 320 (340)
||.+...
T Consensus 309 lY~v~~~ 315 (353)
T PF00930_consen 309 LYRVSLD 315 (353)
T ss_dssp EEEEETT
T ss_pred EEEEEeC
Confidence 8888766
No 319
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.85 E-value=3.1e-05 Score=63.94 Aligned_cols=273 Identities=14% Similarity=0.117 Sum_probs=134.2
Q ss_pred CCCceEEEEeCCCCCCcccCCeeeEEEecCC-CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCC
Q 019482 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD 111 (340)
Q Consensus 33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 111 (340)
.++.-.+|.++..+... ..|..+. ........+|+++.++.......|+-.|+.+.+....+.. .
T Consensus 56 ~dg~~nly~lDL~t~~i-------~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~-------p 121 (386)
T PF14583_consen 56 FDGNRNLYLLDLATGEI-------TQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV-------P 121 (386)
T ss_dssp TTSS-EEEEEETTT-EE-------EE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE---------
T ss_pred cCCCcceEEEEcccCEE-------EECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC-------C
Confidence 45557777777554332 2233332 2233567778888877666566788888887764322221 1
Q ss_pred CCCeEEEEEe--cCCCeEEEcc----------------------CCCcEEEEeCCCCceeeccccCccceeEEEecC-CC
Q 019482 112 AGPQKCLSFS--VDGSRFAAGG----------------------VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL-DS 166 (340)
Q Consensus 112 ~~~v~~~~~~--~~~~~l~~~~----------------------~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~ 166 (340)
..-+-...|. .|+.+++-.- -...|.-.|+.+++....+ .....+..+.|+| |.
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~-~~~~wlgH~~fsP~dp 200 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF-EDTDWLGHVQFSPTDP 200 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE-EESS-EEEEEEETTEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE-ecCccccCcccCCCCC
Confidence 2333334553 3455443221 1124556677777654333 3445678899999 55
Q ss_pred CeEEEeeC---CC-eEEEEEccC-CeeEEEeec-CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee
Q 019482 167 EFLATTST---DG-SARIWKTED-GVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (340)
Q Consensus 167 ~~l~~~~~---d~-~v~iwd~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 240 (340)
..|+.|-. +. .-|||-+++ +.....+.. ...+.+..=-|.|||..+.+.....++.+..|.-+|+.+++.....
T Consensus 201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~ 280 (386)
T PF14583_consen 201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM 280 (386)
T ss_dssp EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE
T ss_pred CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE
Confidence 56666542 22 236676653 333333321 2234566677999999876655555666788999999988754322
Q ss_pred eccCCCeeEEEECCCCCEEEEeeCC----------------CcEEEEeccCceEeeccc--------ccccccceeeEEE
Q 019482 241 RLLRKPASVLSISLDGKYLAMGSKD----------------GDICVVDVKKMEINHWSK--------RLHLGTSIALVEF 296 (340)
Q Consensus 241 ~~~~~~i~~~~~s~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~--------~~~~~~~i~~~~~ 296 (340)
.. .....+..++||++++-=+.| .-|++++++.+....... .++....=....|
T Consensus 281 ~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~F 358 (386)
T PF14583_consen 281 EM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSF 358 (386)
T ss_dssp EE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE
T ss_pred eC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCcc
Confidence 22 234456678899887654333 146678887765432111 1111111246789
Q ss_pred ecCCeEEEE-EecCCcEEEEEecCCCC
Q 019482 297 CPTQRVVLT-ASKEWGAMITKLTVPAD 322 (340)
Q Consensus 297 ~~~~~~l~~-~~~dg~i~iw~~~~~~~ 322 (340)
+|||++++- +...|...||-++.|..
T Consensus 359 SPDgk~VlF~Sd~~G~~~vY~v~i~~~ 385 (386)
T PF14583_consen 359 SPDGKWVLFRSDMEGPPAVYLVEIPDD 385 (386)
T ss_dssp -TTSSEEEEEE-TTSS-EEEEEE--CC
T ss_pred CCCCCEEEEECCCCCCccEEEEeCccc
Confidence 999987654 55579999998887753
No 320
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.79 E-value=3.6e-06 Score=72.34 Aligned_cols=228 Identities=9% Similarity=0.036 Sum_probs=133.4
Q ss_pred CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCC---CCe-EEEEEecCCCeEEEccCCCcEEEEeCCCCceeec
Q 019482 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA---GPQ-KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD 149 (340)
Q Consensus 74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~---~~v-~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 149 (340)
.+..+++++.++.+.-+|..+++...+.........-.. ..+ ..+.. ++..++.++.+|.+..+|.++|+.+.+
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 356777888888899999988887766533211000000 000 01111 345677788899999999999998876
Q ss_pred cccCccceeE-EEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCc----eeeEEEccCCCcceEEEEEecCCcc
Q 019482 150 EPKAHKSVLD-MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK----IELCRFSKDGTKPFLFCTVQRGDKA 224 (340)
Q Consensus 150 ~~~~~~~i~~-~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~d~ 224 (340)
..... .+.+ ... .+..++.++.++.+..+|.++|+.+-......... ..+.... ++. ++.+..++
T Consensus 146 ~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~------v~~~~~~g 215 (394)
T PRK11138 146 TKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FGG------AIVGGDNG 215 (394)
T ss_pred ccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CCE------EEEEcCCC
Confidence 64332 2221 111 24466677788999999999999887765321100 0111111 222 45567788
Q ss_pred eEEEEECCCCcEEeeeeccCC-------CeeEEEECC--CCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEE
Q 019482 225 LLAVYDISTWNKIGHKRLLRK-------PASVLSISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVE 295 (340)
Q Consensus 225 ~i~i~d~~~~~~~~~~~~~~~-------~i~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~ 295 (340)
.+..+|..+++.+-....... ....+.-+| .+..+++++.+|.+..+|..+++.+-...... ...+.
T Consensus 216 ~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~----~~~~~ 291 (394)
T PRK11138 216 RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS----VNDFA 291 (394)
T ss_pred EEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC----ccCcE
Confidence 899999998876544321110 011112233 35567777889999999999998765432211 11222
Q ss_pred EecCCeEEEEEecCCcEEEEEecC
Q 019482 296 FCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 296 ~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
.++..|+.++.+|.+...+...
T Consensus 292 --~~~~~vy~~~~~g~l~ald~~t 313 (394)
T PRK11138 292 --VDGGRIYLVDQNDRVYALDTRG 313 (394)
T ss_pred --EECCEEEEEcCCCeEEEEECCC
Confidence 2344566666777777666643
No 321
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.78 E-value=1.6e-05 Score=67.25 Aligned_cols=236 Identities=15% Similarity=0.127 Sum_probs=132.3
Q ss_pred CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCC-----------CCCCCeEEEEEecCCCeEEEcc
Q 019482 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL-----------QDAGPQKCLSFSVDGSRFAAGG 131 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~ 131 (340)
...+....|+|+|+.++.... +.|.+++..++... ++.......+ +--+.-..+.||||+++|+...
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~~-~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQET-QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEEE-ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ccccccceeecCCCeeEEEec-CceEEEECCCCCeE-EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 567889999999999998875 55999988766432 2211110000 0012235688999999988653
Q ss_pred CC-C-----------------------------------cEEEEeCCCCceee-ccc----cCccceeEEEecCCCCeEE
Q 019482 132 VD-G-----------------------------------HLRIMHWPSLRIIL-DEP----KAHKSVLDMDFSLDSEFLA 170 (340)
Q Consensus 132 ~d-g-----------------------------------~i~~~d~~~~~~~~-~~~----~~~~~i~~~~~~~~~~~l~ 170 (340)
.| . .+.++|+.+++... ... .....+..+.|.++++.|+
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 21 1 24445665554321 111 2233688899999988443
Q ss_pred E--eeCCC---eEEEEEccCCeeEEEeecCCCCce---eeEEEc-cCCCcceEEEEEecCCcceEEEEECCCCcEEeeee
Q 019482 171 T--TSTDG---SARIWKTEDGVAWTFLTRNSDEKI---ELCRFS-KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (340)
Q Consensus 171 ~--~~~d~---~v~iwd~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 241 (340)
. .+++. .+.++|..++...........+.+ ....|. +++..++. +.....-..|.+++...+... .+.
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~--~s~~~G~~hly~~~~~~~~~~-~lT 276 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLW--ISERDGYRHLYLYDLDGGKPR-QLT 276 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEE--EEETTSSEEEEEEETTSSEEE-ESS
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEE--EEEcCCCcEEEEEccccccee-ccc
Confidence 3 33332 467778877665444443333333 345554 66665322 222334556777787776643 444
Q ss_pred ccCCCeeE-EEECCCCCEEE-EeeC----CCcEEEEecc-CceEeecccccccccce-eeEEEecCCeEEEEEe
Q 019482 242 LLRKPASV-LSISLDGKYLA-MGSK----DGDICVVDVK-KMEINHWSKRLHLGTSI-ALVEFCPTQRVVLTAS 307 (340)
Q Consensus 242 ~~~~~i~~-~~~s~~~~~l~-~~~~----dg~i~i~d~~-~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~ 307 (340)
...-.|.. +.++++++.|+ ++.. ...|+..++. .++..+.... ... ..+.|||++++++-..
T Consensus 277 ~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~----~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 277 SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCE----DGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp -SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTT----SSTTEEEEE-TTSSEEEEEE
T ss_pred cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCC----CCCceEEEECCCCCEEEEEE
Confidence 44556644 77888876655 4443 2356666777 5565554322 223 5899999998876543
No 322
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.78 E-value=3.5e-07 Score=81.23 Aligned_cols=183 Identities=15% Similarity=0.166 Sum_probs=129.3
Q ss_pred CCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceee
Q 019482 123 DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIEL 202 (340)
Q Consensus 123 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~ 202 (340)
++..++.|+-...+..+|+++.+......-....+.-+.. +++++.+|...|+|.+-|.++-+.+.++..+. +.+..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs-~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS-GSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccc-cceee
Confidence 3446666766677888898887766544333334554544 58899999999999999999999999998554 55655
Q ss_pred EEEccCCCcceEEEEEecC---------CcceEEEEECCCCcEEeeeeccCCCeeEEEECCC-CCEEEEeeCCCcEEEEe
Q 019482 203 CRFSKDGTKPFLFCTVQRG---------DKALLAVYDISTWNKIGHKRLLRKPASVLSISLD-GKYLAMGSKDGDICVVD 272 (340)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~---------~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d 272 (340)
+ +-.|+. ++++| .|..|+|||+|..+.+..+..+.++ .-+.|.|. ...+++++..|...+-|
T Consensus 223 f--Dv~GNl-----LitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 223 F--DVQGNL-----LITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred e--eccCCe-----EEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeecc
Confidence 4 445554 33333 3677999999988776555544433 55678885 46788888999999999
Q ss_pred ccCc-eEeecccccc-cccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482 273 VKKM-EINHWSKRLH-LGTSIALVEFCPTQRVVLTASKEWGAMITK 316 (340)
Q Consensus 273 ~~~~-~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~ 316 (340)
..+. .+.......+ .+..+..+.++++++.++.|..+|.|.+|.
T Consensus 295 ~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 295 TATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 4432 2211111112 134599999999999999999999999998
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=4.7e-06 Score=73.91 Aligned_cols=205 Identities=12% Similarity=0.015 Sum_probs=128.8
Q ss_pred EEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC-----cEEEEeCCC
Q 019482 69 IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-----HLRIMHWPS 143 (340)
Q Consensus 69 ~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~ 143 (340)
-+|++.+..++.|+.+|.|.+++-.- +....+.. .++ +.|..+....+..+|++.+.|+ .+++|+++.
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s~-~~~~~fqa-----~~~-siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSSF-QLIRGFQA-----YEQ-SIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecccc-eeeehhee-----cch-hhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence 34678888999999999887776422 11122211 112 1234343333446777777664 499999864
Q ss_pred Cc------ee--ecccc-----CccceeEEEecCCCCeEEEeeCCCeEEEEEc---cCCeeEEEeecCCCCceeeEEEcc
Q 019482 144 LR------II--LDEPK-----AHKSVLDMDFSLDSEFLATTSTDGSARIWKT---EDGVAWTFLTRNSDEKIELCRFSK 207 (340)
Q Consensus 144 ~~------~~--~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~---~~~~~~~~~~~~~~~~v~~~~~~~ 207 (340)
.+ ++ .+... ...++.+++.+.+-+.+|.|-.+|.|..+.= +.......+.....++|+.+.+..
T Consensus 102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS 181 (933)
T ss_pred cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence 31 12 11111 2347889999999899999999999998852 122222233344567899999999
Q ss_pred CCCcceEEEEEecCCcceEEEEECCCCcE-EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccc
Q 019482 208 DGTKPFLFCTVQRGDKALLAVYDISTWNK-IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH 286 (340)
Q Consensus 208 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 286 (340)
+++.. +.......|.+|.+....+ ......++.++.|.++++....+++++. ..+.+|+.....+-..+..++
T Consensus 182 d~~s~-----lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~ 255 (933)
T KOG2114|consen 182 DGKSV-----LFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGE 255 (933)
T ss_pred CCcee-----EEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCC
Confidence 99863 2222345688898884442 3446777888999999886654555543 459999987655444443333
No 324
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.76 E-value=1.9e-05 Score=67.81 Aligned_cols=228 Identities=12% Similarity=0.119 Sum_probs=121.4
Q ss_pred eEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCc
Q 019482 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH 135 (340)
Q Consensus 56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 135 (340)
...+......+..+.++|+|++++. +.+|...|+.....+... .+......|.+.++ +|+-...++
T Consensus 25 ~k~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~------------~G~g~~~vw~~~n~-yAv~~~~~~ 90 (443)
T PF04053_consen 25 VKELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA------------FGSGLSFVWSSRNR-YAVLESSST 90 (443)
T ss_dssp -EEEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE------------EEE-SEEEE-TSSE-EEEE-TTS-
T ss_pred eccCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc------------cCceeEEEEecCcc-EEEEECCCe
Confidence 3445555666899999999998888 556768888743333211 13446788998554 566566788
Q ss_pred EEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEE
Q 019482 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (340)
Q Consensus 136 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (340)
|.++.--+.+....+... ..+..+-. |..|...+. +.|.+||.++++.+..+.. .+|..+.|+++++.+
T Consensus 91 I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v---~~vk~V~Ws~~g~~v--- 159 (443)
T PF04053_consen 91 IKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDV---SAVKYVIWSDDGELV--- 159 (443)
T ss_dssp EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS----E-EEEEE-TTSSEE---
T ss_pred EEEEEcCccccceEEcCC-cccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEec---CCCcEEEEECCCCEE---
Confidence 999632222221122211 12333322 787777764 4899999999999998862 248999999999962
Q ss_pred EEEecCCcceEEEEECCCC-----------cEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccc
Q 019482 216 CTVQRGDKALLAVYDISTW-----------NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR 284 (340)
Q Consensus 216 ~~~~~~~d~~i~i~d~~~~-----------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 284 (340)
+..+ +..+.+++.+.. ............|.+..|..+ .++-.+.. .|+. +..|+....
T Consensus 160 --al~t-~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i--- 228 (443)
T PF04053_consen 160 --ALVT-KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGII--- 228 (443)
T ss_dssp --EEE--S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEE---
T ss_pred --EEEe-CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceE---
Confidence 2223 446777665433 022223332567888899766 44444444 6776 445544322
Q ss_pred cccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482 285 LHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 285 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
.|...++.=+...|+.+.+.....|+.+..+.++.
T Consensus 229 ~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 229 AHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 12245777788888778899999999998888763
No 325
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.76 E-value=4.4e-07 Score=77.14 Aligned_cols=118 Identities=12% Similarity=0.152 Sum_probs=81.1
Q ss_pred CCeeEEEEcCC-CCeEEEE----ecCCC----EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC
Q 019482 64 GDPMTIAVNPS-GDDFVCS----TTNGG----CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (340)
Q Consensus 64 ~~v~~~~~~~~-~~~l~~~----~~d~~----i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 134 (340)
..+.++.|+.. ...+.+. +.+|. -.+|++..++... . ....++....|.|.+++|+.+.++.|+.||
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqr-v---svtsipL~s~v~~ca~sp~E~kLvlGC~Dg 281 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQR-V---SVTSIPLPSQVICCARSPSEDKLVLGCEDG 281 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeE-E---EEEEEecCCcceEEecCcccceEEEEecCC
Confidence 34567777763 3334332 23332 3456665443221 1 122234678999999999999999999999
Q ss_pred cEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCe
Q 019482 135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV 187 (340)
Q Consensus 135 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~ 187 (340)
.|.+||...+... .....-..+.++|+|+|..+++|+..|.+.+||+.-..
T Consensus 282 SiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 282 SIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred eEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 9999998765332 22233357889999999999999999999999986443
No 326
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=1.1e-06 Score=77.63 Aligned_cols=113 Identities=15% Similarity=0.188 Sum_probs=78.9
Q ss_pred EEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCE
Q 019482 8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGC 87 (340)
Q Consensus 8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i 87 (340)
+-.+|.|..+ ++|...-. ....+.+.||.-.. +|....+..-| +++++|+|..-.|+.|-.-|.+
T Consensus 19 ti~SWHPseP---lfAVA~fS--~er~GSVtIfadtG-------EPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~ 83 (1416)
T KOG3617|consen 19 TISSWHPSEP---LFAVASFS--PERGGSVTIFADTG-------EPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGVS 83 (1416)
T ss_pred cccccCCCCc---eeEEEEec--CCCCceEEEEecCC-------CCCccccccee---hhhhccChHHHHHhhcccccee
Confidence 4468998544 34333211 12445677774321 22222333334 6679999999899999999999
Q ss_pred EEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482 88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (340)
Q Consensus 88 ~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 142 (340)
.+|...+.+..... ..|..+|..+.||++|..++++..-|.+.+|...
T Consensus 84 ~v~~~~~~e~htv~-------~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 84 DVQKTNTTETHTVV-------ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred EEEecCCceeeeec-------cCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 99998766543222 2488999999999999999999999999999765
No 327
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=3e-07 Score=81.14 Aligned_cols=111 Identities=16% Similarity=0.206 Sum_probs=86.1
Q ss_pred eeEEEEcCCCCeEEEEec----CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC
Q 019482 66 PMTIAVNPSGDDFVCSTT----NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (340)
Q Consensus 66 v~~~~~~~~~~~l~~~~~----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~ 141 (340)
.+-..|+|...++|+++- .|.|.||- +++++..... ..-.+.+++|+|..-.|+.|..-|.+.+|..
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--------~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT--------YPVHATSLCWHPEEFVLAQGWEMGVSDVQKT 88 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc--------cceehhhhccChHHHHHhhccccceeEEEec
Confidence 445679999999987763 47788874 4444322221 1234567999999889999999999999998
Q ss_pred CCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccC
Q 019482 142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED 185 (340)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~ 185 (340)
.+.+.-.....|..+|..+.|+|+|..++++..-|.|.+|....
T Consensus 89 ~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 89 NTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred CCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 87766655667778999999999999999999999999998763
No 328
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=3.5e-07 Score=74.87 Aligned_cols=206 Identities=12% Similarity=0.031 Sum_probs=143.6
Q ss_pred CCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC--C-ceeeccccCccceeEEEecCCCCeEEEeeC-CCeEEEEEccCC
Q 019482 111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS--L-RIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKTEDG 186 (340)
Q Consensus 111 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~~~~ 186 (340)
|...|+.+.-. -.+++.+++.||.++.|--.. + +.+..+..|-..|.+++.+-++..+.+.+. |..++++|+++-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 66777766554 456999999999999997432 1 234445556678899999999999999777 999999999865
Q ss_pred eeEEEeecCCCCceeeEEE--ccCCCcceEEEEEecCCcceEEEEECCCCc--EEeeeeccCCCeeEEEECCCCCEEEEe
Q 019482 187 VAWTFLTRNSDEKIELCRF--SKDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMG 262 (340)
Q Consensus 187 ~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~ 262 (340)
..+.-++... ....+.| ++.... ....+....++.+.++|-.... .......|..+|..+.+.|-+..+++.
T Consensus 87 DminmiKL~~--lPg~a~wv~skGd~~--s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi 162 (558)
T KOG0882|consen 87 DMINMIKLVD--LPGFAEWVTSKGDKI--SLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI 162 (558)
T ss_pred chhhhccccc--CCCceEEecCCCCee--eeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence 4433222111 1122222 232221 1114555678899999977543 334456678899999999999999999
Q ss_pred eCCCcEEEEeccC-ceEee-----ccc-------ccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 263 SKDGDICVVDVKK-MEINH-----WSK-------RLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 263 ~~dg~i~i~d~~~-~~~~~-----~~~-------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
...|.|.-|..+. .+.+. .++ .........++.|+|++..+.+-+.|..|+++.+...+
T Consensus 163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 9999999998873 11111 000 01113467899999999999999999999999997654
No 329
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.70 E-value=7.1e-06 Score=71.75 Aligned_cols=230 Identities=12% Similarity=0.075 Sum_probs=133.0
Q ss_pred CCCeEEEEec-CCCEEEEEecCceeeeeeccccCC--------CCCCCCCeEE-----EEEecCCCeEEEc-cCCCcEEE
Q 019482 74 SGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMP--------PLQDAGPQKC-----LSFSVDGSRFAAG-GVDGHLRI 138 (340)
Q Consensus 74 ~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~--------~~~~~~~v~~-----~~~~~~~~~l~~~-~~dg~i~~ 138 (340)
||++|+.-.. +..|-..+++..+....+...... ..+....|.+ +=+.|||+.+... -..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 6777777654 445666666554433222111110 0112222221 2344566544322 23456777
Q ss_pred EeCCCCceeeccccCccceeEEEecCCCCeEEEeeCC----CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE
Q 019482 139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (340)
Q Consensus 139 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (340)
.|.++.+....+.-.. ....++++|+|+++++.+.+ .++..-+..+...+..+.... .-++.++|++.
T Consensus 220 ID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~-----iea~vkdGK~~-- 291 (635)
T PRK02888 220 VDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR-----IEEAVKAGKFK-- 291 (635)
T ss_pred EECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH-----HHHhhhCCCEE--
Confidence 7877766655543322 44678899999998887642 123222222221111111000 01334577752
Q ss_pred EEEEecCCcceEEEEECCC----CcEEeeeeccCCCeeEEEECCCCCEEEEeeC-CCcEEEEeccCceE-----------
Q 019482 215 FCTVQRGDKALLAVYDIST----WNKIGHKRLLRKPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEI----------- 278 (340)
Q Consensus 215 ~~~~~~~~d~~i~i~d~~~----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~----------- 278 (340)
.. .++.|.+.|.++ +..+.....-......+.++|||+++++++. ++.+.++|+.+.+.
T Consensus 292 ---~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~ 366 (635)
T PRK02888 292 ---TI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDA 366 (635)
T ss_pred ---EE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccce
Confidence 22 367899999998 3333333334456788999999999888765 88999999988553
Q ss_pred -eecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482 279 -NHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 279 -~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
...... +......+|.++|....|.--|..|..|++..
T Consensus 367 vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 367 VVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 222221 33456778999999888999999999999975
No 330
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.67 E-value=7.2e-06 Score=71.70 Aligned_cols=184 Identities=10% Similarity=0.028 Sum_probs=115.3
Q ss_pred EcCCCCeEEEE-ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC----CcEEEEeCCCCc
Q 019482 71 VNPSGDDFVCS-TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----GHLRIMHWPSLR 145 (340)
Q Consensus 71 ~~~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~ 145 (340)
+.|||+.+... -..+.+.+.|.++.+...++.. .+....+.++|+|+++++.+.+ .++...+..+..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V--------dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d 271 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV--------DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD 271 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEe--------CCCcccceECCCCCEEEEeccCcccCcceeeeccccCc
Confidence 45566655322 2335677777776665555432 1244567899999998877632 223333322211
Q ss_pred eeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccC-----CeeEEEeecCCCCceeeEEEccCCCcceEEEEEec
Q 019482 146 IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-----GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR 220 (340)
Q Consensus 146 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 220 (340)
.+..+.- ..+ -++.++|++...+ ++.|.+.|.++ .+.+..+.. ......+.++|||+++ ++++
T Consensus 272 ~~vvfni--~~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPV--GKsPHGV~vSPDGkyl----yVan 339 (635)
T PRK02888 272 WVVVFNI--ARI--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPV--PKNPHGVNTSPDGKYF----IANG 339 (635)
T ss_pred eEEEEch--HHH--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEEC--CCCccceEECCCCCEE----EEeC
Confidence 1111100 000 1345577766653 67899999988 345555543 3458899999999974 5677
Q ss_pred CCcceEEEEECCCCcE------------EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC
Q 019482 221 GDKALLAVYDISTWNK------------IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (340)
Q Consensus 221 ~~d~~i~i~d~~~~~~------------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 275 (340)
..+..+.++|+.+.+. +.+.....++ ...+|.++|+...+-.-|..|-.||+.+
T Consensus 340 klS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 340 KLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 7899999999988553 2233332233 4568999998888888899999999876
No 331
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.66 E-value=9.9e-05 Score=59.92 Aligned_cols=243 Identities=12% Similarity=0.067 Sum_probs=140.9
Q ss_pred eEEEEcCCCCeEEEEe----------cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc--CCC
Q 019482 67 MTIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--VDG 134 (340)
Q Consensus 67 ~~~~~~~~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg 134 (340)
-.+..+|+++.+++++ +.-.|.+||..+......+.....+..........++++.|+++++... --.
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 3467899999888643 3447999999998776655433221111122334568888998877653 345
Q ss_pred cEEEEeCCCCceeeccccCccceeEEEecC-CCCeEEEeeCCCeEEEEEcc-CCeeEEEee----cCCCCceeeEEEccC
Q 019482 135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTE-DGVAWTFLT----RNSDEKIELCRFSKD 208 (340)
Q Consensus 135 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~----~~~~~~v~~~~~~~~ 208 (340)
.|.|.|+..++.+..+.-. + |...-| ..+.|.+-+.||++.-..+. .|+...... ...+..+..-++...
T Consensus 119 SVtVVDl~~~kvv~ei~~P-G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDTP-G---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp EEEEEETTTTEEEEEEEGT-S---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred eEEEEECCCCceeeeecCC-C---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence 6899999888876554322 1 222223 22347777789999999887 455542221 111112223344444
Q ss_pred CCcceEEEEEecCCcceEEEEECCCCcEEe--eeecc----------CCCeeEEEECCCCCEEEEeeC--------CC--
Q 019482 209 GTKPFLFCTVQRGDKALLAVYDISTWNKIG--HKRLL----------RKPASVLSISLDGKYLAMGSK--------DG-- 266 (340)
Q Consensus 209 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~--~~~~~----------~~~i~~~~~s~~~~~l~~~~~--------dg-- 266 (340)
+.. ++..+.+|.|+--|+....... ..... .+...-+++++..+.|++.-. |+
T Consensus 195 ~~~-----~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt 269 (342)
T PF06433_consen 195 GGR-----LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT 269 (342)
T ss_dssp TTE-----EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred CCe-----EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence 333 3335667888887777654321 11110 123345778876666555321 22
Q ss_pred cEEEEeccCceEeecccccccccceeeEEEecCCe-EEEEE-ecCCcEEEEEecCCC
Q 019482 267 DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTA-SKEWGAMITKLTVPA 321 (340)
Q Consensus 267 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~~dg~i~iw~~~~~~ 321 (340)
.|-++|+.+++.+..+... .++.+++.+.|.+ +|++. ..++.+.+||....+
T Consensus 270 eVWv~D~~t~krv~Ri~l~---~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLE---HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EEEEEETTTTEEEEEEEEE---EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred EEEEEECCCCeEEEEEeCC---CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 4788899999999887653 3688999998774 56554 457899999987543
No 332
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=1.6e-05 Score=70.72 Aligned_cols=179 Identities=10% Similarity=0.047 Sum_probs=113.4
Q ss_pred EEEecCCCC-eeEEEEcCCCCeEEEEecCC-----CEEEEEecCceeee--eec-cccCC--CC-CCCCCeEEEEEecCC
Q 019482 57 YVFDESEGD-PMTIAVNPSGDDFVCSTTNG-----GCKLFEVYGGATDI--NLL-AKKMP--PL-QDAGPQKCLSFSVDG 124 (340)
Q Consensus 57 ~~~~~h~~~-v~~~~~~~~~~~l~~~~~d~-----~i~iw~~~~~~~~~--~~~-~~~~~--~~-~~~~~v~~~~~~~~~ 124 (340)
..++.+... |..+....+..+|++.+.|+ .++||+++..+... ... ..... .. ....++.+++.+.+-
T Consensus 58 ~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l 137 (933)
T KOG2114|consen 58 RGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL 137 (933)
T ss_pred ehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc
Confidence 445666666 44444444446888877664 48999997542111 111 00000 11 235788999999999
Q ss_pred CeEEEccCCCcEEEEeCC----CCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCce
Q 019482 125 SRFAAGGVDGHLRIMHWP----SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKI 200 (340)
Q Consensus 125 ~~l~~~~~dg~i~~~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v 200 (340)
+.+|+|-.+|.|..+.-+ .+..........++|+.+++..+++.++....-..|.+|.+....+......+++...
T Consensus 138 ~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~l 217 (933)
T KOG2114|consen 138 KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISL 217 (933)
T ss_pred cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccc
Confidence 999999999999988422 1222222233446899999998888733333456899999985544444445666778
Q ss_pred eeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee
Q 019482 201 ELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (340)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 241 (340)
.|..+++.... +.++.+..+.+||....++-..+.
T Consensus 218 nCss~~~~t~q------fIca~~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 218 NCSSFSDGTYQ------FICAGSEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred eeeecCCCCcc------EEEecCceEEEEcCCCcceeeeec
Confidence 89988877664 333446679999988655544444
No 333
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.62 E-value=7.7e-05 Score=57.35 Aligned_cols=110 Identities=12% Similarity=0.020 Sum_probs=80.3
Q ss_pred CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCc
Q 019482 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH 154 (340)
Q Consensus 75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 154 (340)
..+++.|+..+.+.--|..+++...+.... ..+.+-+.- -|++++.|...|.+++.+.++|+....+....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg--------~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~ 93 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG--------VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE 93 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC--------ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh
Confidence 457778888888888888888776554321 223322222 46789999999999999999998877665433
Q ss_pred cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee
Q 019482 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT 193 (340)
Q Consensus 155 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~ 193 (340)
.--......+++..+..|+.|++.+..|.++..++...+
T Consensus 94 ~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 94 TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred hhccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 211234457789999999999999999999888877654
No 334
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=0.00027 Score=60.37 Aligned_cols=241 Identities=11% Similarity=0.158 Sum_probs=157.6
Q ss_pred CeeEEEEcCCCCeEEEEecCC-CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeE-EEccCCCcEEEEeCC
Q 019482 65 DPMTIAVNPSGDDFVCSTTNG-GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRIMHWP 142 (340)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d~~ 142 (340)
....+...|++..+....... .+...+...... ..... . .......++.++.+..+ +....+..|.+.|..
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~-~~~~~-----~-g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~ 104 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTV-TQSLS-----V-GGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTA 104 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeeccccccee-eeecc-----C-CCccccceeeCCCCCeEEEecCCCCeEEEEcCc
Confidence 566788888886555443322 344444431111 11100 0 00334577888888744 444456889999977
Q ss_pred CCceeeccccCccceeEEEecCCCCeEEEeeC---CCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEe
Q 019482 143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (340)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 219 (340)
+.+......... ....++++|+++.+..+.. ++++.+.|..+++.+....... . ...++++|+|... ..+
T Consensus 105 ~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~-P~~~a~~p~g~~v----yv~ 177 (381)
T COG3391 105 TNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-T-PTGVAVDPDGNKV----YVT 177 (381)
T ss_pred ccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-C-cceEEECCCCCeE----EEE
Confidence 766665544333 5678999999987776665 6899999999888888854332 2 3899999999964 344
Q ss_pred cCCcceEEEEECCCCcEEe-e---eeccCCCeeEEEECCCCCEEEEeeCC---CcEEEEeccCceEeeccccccccccee
Q 019482 220 RGDKALLAVYDISTWNKIG-H---KRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLHLGTSIA 292 (340)
Q Consensus 220 ~~~d~~i~i~d~~~~~~~~-~---~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~i~ 292 (340)
...++.|.+.|........ . .......-..+.++|+|.++.+.... +.+...|..++............ ...
T Consensus 178 ~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~ 256 (381)
T COG3391 178 NSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APR 256 (381)
T ss_pred ecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCC
Confidence 4678999999977665542 1 01112334678999999977776544 58999999998877653222212 466
Q ss_pred eEEEecCCeEEEEEecC-CcEEEEEecCC
Q 019482 293 LVEFCPTQRVVLTASKE-WGAMITKLTVP 320 (340)
Q Consensus 293 ~~~~~~~~~~l~~~~~d-g~i~iw~~~~~ 320 (340)
.+..+|+|..+...... +.+.+-+....
T Consensus 257 ~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 257 GVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred ceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 78999999888777444 67777776543
No 335
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=98.60 E-value=0.00016 Score=60.40 Aligned_cols=241 Identities=11% Similarity=0.091 Sum_probs=106.6
Q ss_pred CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEc-----------CCCCeEEEEe-cCCCEEEEEecCce----
Q 019482 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVN-----------PSGDDFVCST-TNGGCKLFEVYGGA---- 96 (340)
Q Consensus 33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----------~~~~~l~~~~-~d~~i~iw~~~~~~---- 96 (340)
....+...++++....+. .-..+..+..-.++....-|+ .+.++|+..+ .++.|+|.|+.+..
T Consensus 35 ~pD~LatVDvdP~S~tYg-qVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~ 113 (461)
T PF05694_consen 35 KPDYLATVDVDPDSPTYG-QVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPR 113 (461)
T ss_dssp ---EEEEEE--TTSTTTT-SEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-E
T ss_pred CCCeEEEEECCCCCCCcc-cEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCc
Confidence 345566677776554432 112222222223456666665 2345776665 66789999997432
Q ss_pred eeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC------CCcEEEEeCCCCceeeccccCcc---ceeEEEecCCCC
Q 019482 97 TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV------DGHLRIMHWPSLRIILDEPKAHK---SVLDMDFSLDSE 167 (340)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~---~i~~~~~~~~~~ 167 (340)
..+.+..++...-..-.....+-.-|+|+.++++-. .|.+.++|-++.+.......... --..+-|.|..+
T Consensus 114 l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n 193 (461)
T PF05694_consen 114 LHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN 193 (461)
T ss_dssp EEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTT
T ss_pred eEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC
Confidence 222211101000001122334445578888877532 35688888777766655443222 356778889888
Q ss_pred eEEEee--------------------CCCeEEEEEccCCeeEEEeecCCCC-ceeeEEEccCCCcceEEEEEecCCcceE
Q 019482 168 FLATTS--------------------TDGSARIWKTEDGVAWTFLTRNSDE-KIELCRFSKDGTKPFLFCTVQRGDKALL 226 (340)
Q Consensus 168 ~l~~~~--------------------~d~~v~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~i 226 (340)
.++|.. ...++.+||+.+.+.++++....++ .+..+.|..+-....-+ +.+.-..+|
T Consensus 194 vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gF--vg~aLss~i 271 (461)
T PF05694_consen 194 VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGF--VGCALSSSI 271 (461)
T ss_dssp EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEE--EEEE--EEE
T ss_pred EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceE--EEEeccceE
Confidence 888764 2357999999999999999865443 45678887664432222 222223334
Q ss_pred E-EEECCCCc----EEeeeecc-----------------CCCeeEEEECCCCCEEEEee-CCCcEEEEeccCc
Q 019482 227 A-VYDISTWN----KIGHKRLL-----------------RKPASVLSISLDGKYLAMGS-KDGDICVVDVKKM 276 (340)
Q Consensus 227 ~-i~d~~~~~----~~~~~~~~-----------------~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~ 276 (340)
. +|..+.++ .+-.+... ..-++.+.+|.|.++|.+.+ ..|.|+.||+...
T Consensus 272 ~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 272 WRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred EEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 4 44333332 11111110 23468899999999998876 4899999999763
No 336
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=8.6e-05 Score=63.31 Aligned_cols=224 Identities=11% Similarity=0.112 Sum_probs=150.3
Q ss_pred CeeEEEEcCCCCeEEEE-ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC---CCcEEEEe
Q 019482 65 DPMTIAVNPSGDDFVCS-TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---DGHLRIMH 140 (340)
Q Consensus 65 ~v~~~~~~~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~~d 140 (340)
....++.++.+..++.. ..+..|.+.|............. .....++++|+++.+..+.. ++++.+.|
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG--------~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid 146 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG--------LGPVGLAVDPDGKYVYVANAGNGNNTVSVID 146 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec--------cCCceEEECCCCCEEEEEecccCCceEEEEe
Confidence 35578888888855544 44578999997666554433221 25578999999987777655 68899999
Q ss_pred CCCCceeeccccCccceeEEEecCCCCeEEEee-CCCeEEEEEccCCeeEE-Ee--ecCCCCceeeEEEccCCCcceEEE
Q 019482 141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWT-FL--TRNSDEKIELCRFSKDGTKPFLFC 216 (340)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~~~-~~--~~~~~~~v~~~~~~~~~~~~~~~~ 216 (340)
-.+++..........+ ..++++|+|+.++.+. .++.|.+.|.+...... .- ..........+.++|++.+.++
T Consensus 147 ~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV-- 223 (381)
T COG3391 147 AATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYV-- 223 (381)
T ss_pred CCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEE--
Confidence 8888877765444445 8899999999766655 68899999977655543 10 0112234678999999997543
Q ss_pred EEecCCcceEEEEECCCCcEEeeeeccCC-CeeEEEECCCCCEEEEeeC-CCcEEEEeccCceEeeccccccc-ccceee
Q 019482 217 TVQRGDKALLAVYDISTWNKIGHKRLLRK-PASVLSISLDGKYLAMGSK-DGDICVVDVKKMEINHWSKRLHL-GTSIAL 293 (340)
Q Consensus 217 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~-~~~i~~ 293 (340)
......++.+...|..++........... ....+..+|+|+++.+... .+.+.+.|..+.........+.. ...+..
T Consensus 224 ~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~ 303 (381)
T COG3391 224 ANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVS 303 (381)
T ss_pred EeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccccccccccee
Confidence 23333357999999998876554222222 4566889999999998844 48899999988776654432211 123555
Q ss_pred EEEecC
Q 019482 294 VEFCPT 299 (340)
Q Consensus 294 ~~~~~~ 299 (340)
+++.+.
T Consensus 304 ~~~~~~ 309 (381)
T COG3391 304 IAISPL 309 (381)
T ss_pred ccceee
Confidence 666553
No 337
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.57 E-value=2.2e-08 Score=85.26 Aligned_cols=197 Identities=15% Similarity=0.077 Sum_probs=127.8
Q ss_pred CCeeEEEEcCC--CCeEEEEecCCCEEEEEecCceee-eeeccccCCCCCCCCCeEEEEEec-CCCeEEEcc----CCCc
Q 019482 64 GDPMTIAVNPS--GDDFVCSTTNGGCKLFEVYGGATD-INLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGG----VDGH 135 (340)
Q Consensus 64 ~~v~~~~~~~~--~~~l~~~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~----~dg~ 135 (340)
..+.|+++.-+ ...+++|..+|.|.+-.+...... ... ..++..++++++|++ |.+.||+|- .|..
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~------tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~ 130 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEV------TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS 130 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCccccccee------cccccccccccccccccHHHHHhhhhhhcccCC
Confidence 34777777653 347889999999999888654332 111 123668899999998 666777774 3567
Q ss_pred EEEEeCCCCce----eecccc-CccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee-EEEeecCCCCceeeEEEcc-C
Q 019482 136 LRIMHWPSLRI----ILDEPK-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSK-D 208 (340)
Q Consensus 136 i~~~d~~~~~~----~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~-~ 208 (340)
+.|||+.++-. ...+.. ......+++|-.+.+++++|.....++++|++.... ...+. ...+..+..+| .
T Consensus 131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn---Tk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN---TKYVQGITVDPFS 207 (783)
T ss_pred ccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh---hhhcccceecCCC
Confidence 99999987621 111222 223566888988889999999989999999984322 12221 12456677777 5
Q ss_pred CCcceEEEEEecCCcceEEEEE-CCCCcE-Eeeeecc----CCCeeEEEECCCC-CEEEEee-CCCcEEEEeccC
Q 019482 209 GTKPFLFCTVQRGDKALLAVYD-ISTWNK-IGHKRLL----RKPASVLSISLDG-KYLAMGS-KDGDICVVDVKK 275 (340)
Q Consensus 209 ~~~~~~~~~~~~~~d~~i~i~d-~~~~~~-~~~~~~~----~~~i~~~~~s~~~-~~l~~~~-~dg~i~i~d~~~ 275 (340)
+.+ +....|+.|.+|| .++-+. +...... ...+..++|+|.. ..+++.. ..+.|++||+..
T Consensus 208 ~nY------~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 208 PNY------FCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCc------eeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 554 5556699999999 443332 2111111 1248899999943 3444444 457899998853
No 338
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.55 E-value=7.4e-06 Score=70.06 Aligned_cols=185 Identities=17% Similarity=0.078 Sum_probs=113.5
Q ss_pred CCeEEEEEecCCCeEEEcc---CC-CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEee-CCC--eEEEEEccC
Q 019482 113 GPQKCLSFSVDGSRFAAGG---VD-GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TDG--SARIWKTED 185 (340)
Q Consensus 113 ~~v~~~~~~~~~~~l~~~~---~d-g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~--~v~iwd~~~ 185 (340)
..+..-+|+|+++.++... .. ..+.++++.+++...... ....-..-+|+|||+.|+.+. .|| .|++.|+..
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~ 271 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG 271 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence 4566778999988765442 22 469999998877554332 233345678999999876554 555 466677776
Q ss_pred CeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc--eEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEee
Q 019482 186 GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS 263 (340)
Q Consensus 186 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 263 (340)
++. ..+.. ..+.-..-.|+|||+.++ ++....| .|.++|...... ..+......-....|+|||++|+..+
T Consensus 272 ~~~-~~Lt~-~~gi~~~Ps~spdG~~iv----f~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 272 KNL-PRLTN-GFGINTSPSWSPDGSKIV----FTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred Ccc-eeccc-CCccccCccCCCCCCEEE----EEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEe
Confidence 663 33432 333445788999999853 3344444 566677766654 33333333333778999999999877
Q ss_pred CC-Cc--EEEEeccCceEeecccccccccceeeEEEecCCeEEEEEec
Q 019482 264 KD-GD--ICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK 308 (340)
Q Consensus 264 ~d-g~--i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 308 (340)
.. |. |.+.|+.++...+.+.. ......-.|.++++.+...+.
T Consensus 345 ~~~g~~~i~~~~~~~~~~~~~lt~---~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 345 SSGGQWDIDKNDLASGGKIRILTS---TYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred ccCCceeeEEeccCCCCcEEEccc---cccCCCCCcCCCCceEEEecc
Confidence 53 44 66777766554333321 223445567777766654443
No 339
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.54 E-value=0.00022 Score=56.30 Aligned_cols=201 Identities=11% Similarity=0.117 Sum_probs=111.7
Q ss_pred EEecCCCCeeEEEEcCCCCeE-EEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcE
Q 019482 58 VFDESEGDPMTIAVNPSGDDF-VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL 136 (340)
Q Consensus 58 ~~~~h~~~v~~~~~~~~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 136 (340)
.+.+-.+.+..++|+|+.+.| ++....+.|..++.+ ++....+.- ...+-...+++..++.++++--+++.+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l------~g~~D~EgI~y~g~~~~vl~~Er~~~L 88 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPL------DGFGDYEGITYLGNGRYVLSEERDQRL 88 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-------SS-SSEEEEEE-STTEEEEEETTTTEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeC------CCCCCceeEEEECCCEEEEEEcCCCcE
Confidence 344556679999999986655 555566777666653 444444322 123567889998888777776678999
Q ss_pred EEEeCCCCce------eec----cc-cCccceeEEEecCCCCeEEEeeCCCeEEEEEccC---CeeEEEee-------cC
Q 019482 137 RIMHWPSLRI------ILD----EP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED---GVAWTFLT-------RN 195 (340)
Q Consensus 137 ~~~d~~~~~~------~~~----~~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~---~~~~~~~~-------~~ 195 (340)
.++++..... ... +. .+...+..++|+|.++.|+.+-...-..+|.++. ...+.... ..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence 9998843211 111 11 1334689999999877777776666677777654 22211111 11
Q ss_pred CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC---------CCeeEEEECCCCCEEEEeeCCC
Q 019482 196 SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR---------KPASVLSISLDGKYLAMGSKDG 266 (340)
Q Consensus 196 ~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~~~~~dg 266 (340)
....+.+++++|....+ ++.+.....|..+| .+|+.+..+.... ...-.++|.++|++.++ ++-+
T Consensus 169 ~~~d~S~l~~~p~t~~l----liLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpN 242 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHL----LILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPN 242 (248)
T ss_dssp -SS---EEEEETTTTEE----EEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTT
T ss_pred eeccccceEEcCCCCeE----EEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCc
Confidence 22357889999987764 45577888899999 6677666555443 24678999999865554 4655
Q ss_pred cEEEE
Q 019482 267 DICVV 271 (340)
Q Consensus 267 ~i~i~ 271 (340)
..++|
T Consensus 243 lfy~f 247 (248)
T PF06977_consen 243 LFYRF 247 (248)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 55554
No 340
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.52 E-value=0.0001 Score=62.52 Aligned_cols=251 Identities=14% Similarity=0.105 Sum_probs=133.6
Q ss_pred CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeee-------------------------eeccccCCC-----------
Q 019482 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI-------------------------NLLAKKMPP----------- 108 (340)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~-------------------------~~~~~~~~~----------- 108 (340)
.|+.+.|.++..-|+++...|.|.||.....+... .+.......
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47889999998899999999999999886543211 000000000
Q ss_pred CCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeecc--cc------CccceeEEEecC-----CC---CeEEEe
Q 019482 109 LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE--PK------AHKSVLDMDFSL-----DS---EFLATT 172 (340)
Q Consensus 109 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--~~------~~~~i~~~~~~~-----~~---~~l~~~ 172 (340)
....++|++++.|.=| +++.|.++|.+.|.|++....+... .. ....++++.|.- |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 0125889999998555 9999999999999999876655431 11 112577888852 33 368888
Q ss_pred eCCCeEEEEEccC---CeeEEEee---cCCCCceeeEE-EccCCCcce---------------EEEEEecCCcceEEEEE
Q 019482 173 STDGSARIWKTED---GVAWTFLT---RNSDEKIELCR-FSKDGTKPF---------------LFCTVQRGDKALLAVYD 230 (340)
Q Consensus 173 ~~d~~v~iwd~~~---~~~~~~~~---~~~~~~v~~~~-~~~~~~~~~---------------~~~~~~~~~d~~i~i~d 230 (340)
...|.+.+|.+.- +.-...+. ..+.+++..+. ++.+..... .-.++....+..++++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 9999999998751 21111111 12334444443 322211100 00122233467799999
Q ss_pred CCCCcEEeeeeccCCCeeEEEEC-----CCCCEEEEeeCCCcEEEEeccCceEeecccccc--cccceeeEEEecCCeEE
Q 019482 231 ISTWNKIGHKRLLRKPASVLSIS-----LDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH--LGTSIALVEFCPTQRVV 303 (340)
Q Consensus 231 ~~~~~~~~~~~~~~~~i~~~~~s-----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l 303 (340)
..+.+..............+.+- ..+..|++-..+|.+++|.+...+.+....... ....+....++++|..+
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~ 321 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIF 321 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EE
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEE
Confidence 98877654444221222334442 356678888899999999999877765543211 12356778889999977
Q ss_pred EEEecCCcEEEEEe
Q 019482 304 LTASKEWGAMITKL 317 (340)
Q Consensus 304 ~~~~~dg~i~iw~~ 317 (340)
+-.+.. .+.++.+
T Consensus 322 ~~~gps-E~~l~sv 334 (395)
T PF08596_consen 322 YWTGPS-EIQLFSV 334 (395)
T ss_dssp EE-SSS-EEEEEEE
T ss_pred EEeCcc-cEEEEEE
Confidence 766554 3333333
No 341
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.52 E-value=0.00055 Score=62.40 Aligned_cols=154 Identities=14% Similarity=0.200 Sum_probs=103.0
Q ss_pred ceeEEEecCC-CCeEEEee----------CCCeEEEEEccCCeeEEEee-cCCCCceeeEEEccCCCcceEEEEEecCCc
Q 019482 156 SVLDMDFSLD-SEFLATTS----------TDGSARIWKTEDGVAWTFLT-RNSDEKIELCRFSKDGTKPFLFCTVQRGDK 223 (340)
Q Consensus 156 ~i~~~~~~~~-~~~l~~~~----------~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d 223 (340)
.+.++.|..| +.++++|. ..|.|.++.+..++.+.... ..-.+.+.++.-- +|+ +.++-.
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngk-------llA~In 847 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGK-------LLAGIN 847 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCe-------EEEecC
Confidence 4555668776 66777775 24788888887744433332 1223444444322 444 334557
Q ss_pred ceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce--EeecccccccccceeeEEEecCCe
Q 019482 224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME--INHWSKRLHLGTSIALVEFCPTQR 301 (340)
Q Consensus 224 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~ 301 (340)
.+|++|+..+.+.++.-..+..++..+...-.|..+++|.--+++.+...+..+ ........+ ....+++.+-.+ .
T Consensus 848 ~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~-p~Wmtaveil~~-d 925 (1096)
T KOG1897|consen 848 QSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYN-PNWMTAVEILDD-D 925 (1096)
T ss_pred cEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhC-ccceeeEEEecC-c
Confidence 789999999887776666777889999999999999999988888876665544 444433334 567888887654 4
Q ss_pred EEEEEecCCcEEEEEecC
Q 019482 302 VVLTASKEWGAMITKLTV 319 (340)
Q Consensus 302 ~l~~~~~dg~i~iw~~~~ 319 (340)
.++.+..+|.+++-..+.
T Consensus 926 ~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 926 TYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred eEEeecccccEEEEEecC
Confidence 566666788888777663
No 342
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.50 E-value=6.7e-06 Score=70.30 Aligned_cols=166 Identities=16% Similarity=0.088 Sum_probs=107.2
Q ss_pred cEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEee---CC-CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCC
Q 019482 135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS---TD-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210 (340)
Q Consensus 135 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d-~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (340)
.+.+-|.. +.....+......+..-+|+|+++.++..+ .. ..+.++++.+++....+. ..+.-...+|+|||+
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG~ 250 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDGS 250 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--cCCccCCccCCCCCC
Confidence 44444543 444444444455677789999998766553 22 469999999887766654 233456789999998
Q ss_pred cceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCC-C--cEEEEeccCceEeeccccccc
Q 019482 211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD-G--DICVVDVKKMEINHWSKRLHL 287 (340)
Q Consensus 211 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~ 287 (340)
.+.+ .......-.|.++|+...+.. .+....+.-+.-.|+|||++++..+.. | .|.++|.+.....+......
T Consensus 251 ~l~f--~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~- 326 (425)
T COG0823 251 KLAF--SSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG- 326 (425)
T ss_pred EEEE--EECCCCCccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCC-
Confidence 7422 222334456788888877743 344444444577899999999887653 3 47777887776654443322
Q ss_pred ccceeeEEEecCCeEEEEEecC
Q 019482 288 GTSIALVEFCPTQRVVLTASKE 309 (340)
Q Consensus 288 ~~~i~~~~~~~~~~~l~~~~~d 309 (340)
.-..-.|+|||++|+..+..
T Consensus 327 --~~~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 327 --GNSNPVWSPDGDKIVFESSS 346 (425)
T ss_pred --CCcCccCCCCCCEEEEEecc
Confidence 12267899999998877753
No 343
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.49 E-value=0.00019 Score=55.31 Aligned_cols=70 Identities=20% Similarity=0.239 Sum_probs=54.2
Q ss_pred CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeE-EEEEecCCCeEEEccCCCcEEEEeCCCCceeeccc
Q 019482 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK-CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP 151 (340)
Q Consensus 74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 151 (340)
-|++++.|...|.+++.+.+++.....+.... .|. .....+++.++..++.|++.+..|..+..++.+.+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~--------~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE--------TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehh--------hhccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 47789999999999999999997766664322 121 23456788899999999999999998887776644
No 344
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.46 E-value=1.1e-07 Score=81.24 Aligned_cols=201 Identities=15% Similarity=0.242 Sum_probs=130.3
Q ss_pred CCCeEEEEEecCC--CeEEEccCCCcEEEEeCCCCce--eeccccCccceeEEEecC-CCCeEEEee----CCCeEEEEE
Q 019482 112 AGPQKCLSFSVDG--SRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKSVLDMDFSL-DSEFLATTS----TDGSARIWK 182 (340)
Q Consensus 112 ~~~v~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~i~~~~~~~-~~~~l~~~~----~d~~v~iwd 182 (340)
...+.|+++.-+. ..+++|..+|.|.+-.++...- ....+++..+.++++|++ |.+.||.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 3566777776643 4778888999999988764322 223445566899999999 777787774 356899999
Q ss_pred ccCC--eeE--EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECC-CCC
Q 019482 183 TEDG--VAW--TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL-DGK 257 (340)
Q Consensus 183 ~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~ 257 (340)
+.++ .+. ..+.........+++|..+.+. +.+|.....+.++|++.... .........+..+..+| .+.
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~kl-----vlaGm~sr~~~ifdlRqs~~-~~~svnTk~vqG~tVdp~~~n 209 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKL-----VLAGMTSRSVHIFDLRQSLD-SVSSVNTKYVQGITVDPFSPN 209 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcch-----hhcccccchhhhhhhhhhhh-hhhhhhhhhcccceecCCCCC
Confidence 9876 222 1222212234568888877775 67777788999999984221 11122233566678888 778
Q ss_pred EEEEeeCCCcEEEEe-ccCce-Eeecccccc--cccceeeEEEecCC-eEEEEEecC-CcEEEEEecC
Q 019482 258 YLAMGSKDGDICVVD-VKKME-INHWSKRLH--LGTSIALVEFCPTQ-RVVLTASKE-WGAMITKLTV 319 (340)
Q Consensus 258 ~l~~~~~dg~i~i~d-~~~~~-~~~~~~~~~--~~~~i~~~~~~~~~-~~l~~~~~d-g~i~iw~~~~ 319 (340)
|+++-. ||.|.+|| ...-+ ++..+.... ....+..++|.|.. ..+++.+.| ++|+++++..
T Consensus 210 Y~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 210 YFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 888776 89999999 33322 222221111 01248999999954 356666665 7788888753
No 345
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.40 E-value=0.00025 Score=55.99 Aligned_cols=195 Identities=11% Similarity=0.130 Sum_probs=106.5
Q ss_pred CCeEEEEEecCCC-eEEEccCCCcEEEEeCCCCceeeccccC-ccceeEEEecCCCCeEEEeeCCCeEEEEEccCCe---
Q 019482 113 GPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPSLRIILDEPKA-HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV--- 187 (340)
Q Consensus 113 ~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~--- 187 (340)
..+..++|+|+.+ ++++....+.|..++. +|+.+.++.-. .+....+++..++.++++.-.++.+.++++....
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 4599999999755 6667777888888886 46666555332 3467889998888777777678999999984321
Q ss_pred ---eEEEee----cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC---CcEEeee--------eccCCCeeE
Q 019482 188 ---AWTFLT----RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST---WNKIGHK--------RLLRKPASV 249 (340)
Q Consensus 188 ---~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~---~~~~~~~--------~~~~~~i~~ 249 (340)
....+. ...+..+..++|+|.+..++ .+....-..+|.++. ...+... ...-..+.+
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-----v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~ 175 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-----VAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG 175 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEE-----EEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEE-----EEeCCCChhhEEEccccCccceeeccccccccccceeccccc
Confidence 112222 12334588999999988733 333343344554432 1111111 112245788
Q ss_pred EEECCC-CCEEEEeeCCCcEEEEeccCceEeeccc--cccc-----ccceeeEEEecCCeEEEEEecCCcEEEE
Q 019482 250 LSISLD-GKYLAMGSKDGDICVVDVKKMEINHWSK--RLHL-----GTSIALVEFCPTQRVVLTASKEWGAMIT 315 (340)
Q Consensus 250 ~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~iw 315 (340)
++++|. +++++....+..|..+| .+|+++..+. .+.+ -.....|+|.++|++.++. +-+..+++
T Consensus 176 l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 176 LSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred eEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 999995 56666677788899999 5565544332 1111 1257899999999765555 44444443
No 346
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.38 E-value=0.0014 Score=57.99 Aligned_cols=194 Identities=12% Similarity=0.095 Sum_probs=113.6
Q ss_pred CCCEEEEEecCceeeeeeccccCC--CCCCC-----------CCe-EEEEEecCCCeEEEccCCC---------------
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMP--PLQDA-----------GPQ-KCLSFSVDGSRFAAGGVDG--------------- 134 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~--~~~~~-----------~~v-~~~~~~~~~~~l~~~~~dg--------------- 134 (340)
++.+..+|..+++...+....... ..+.. ..+ ...++.+.+..++.++.++
T Consensus 174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~ 253 (488)
T cd00216 174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNL 253 (488)
T ss_pred CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCC
Confidence 577888898888877665432110 00000 111 1244555556777776554
Q ss_pred ---cEEEEeCCCCceeeccccCcccee------EEEec----CCCC---eEEEeeCCCeEEEEEccCCeeEEEeecCCCC
Q 019482 135 ---HLRIMHWPSLRIILDEPKAHKSVL------DMDFS----LDSE---FLATTSTDGSARIWKTEDGVAWTFLTRNSDE 198 (340)
Q Consensus 135 ---~i~~~d~~~~~~~~~~~~~~~~i~------~~~~~----~~~~---~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~ 198 (340)
.|.-+|..+++............. ...+. -++. .++.++.+|.+...|.++|+.+-......
T Consensus 254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-- 331 (488)
T cd00216 254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE-- 331 (488)
T ss_pred ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--
Confidence 699999999998876543211111 00111 1333 57788889999999999999877654221
Q ss_pred ceeeEEEccCCCcceEEE-------------EEecCCcceEEEEECCCCcEEeeeeccC--------CCeeEEEECCCCC
Q 019482 199 KIELCRFSKDGTKPFLFC-------------TVQRGDKALLAVYDISTWNKIGHKRLLR--------KPASVLSISLDGK 257 (340)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~-------------~~~~~~d~~i~i~d~~~~~~~~~~~~~~--------~~i~~~~~s~~~~ 257 (340)
..++.+| ..+++.. ......++.+.-.|..+++.+-...... .+...-...-.+.
T Consensus 332 --~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~ 407 (488)
T cd00216 332 --QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGN 407 (488)
T ss_pred --cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCC
Confidence 1223333 2111100 0012346789999999998775554331 1111101112567
Q ss_pred EEEEeeCCCcEEEEeccCceEeeccc
Q 019482 258 YLAMGSKDGDICVVDVKKMEINHWSK 283 (340)
Q Consensus 258 ~l~~~~~dg~i~i~d~~~~~~~~~~~ 283 (340)
.+++++.||.|+.+|.++++.+-...
T Consensus 408 ~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 408 LVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred eEEEECCCCeEEEEECCCCceeeEEE
Confidence 88999999999999999999887654
No 347
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.37 E-value=9.2e-05 Score=61.83 Aligned_cols=178 Identities=12% Similarity=0.167 Sum_probs=105.9
Q ss_pred CcEEEEeCCCCceeeccccC-ccceeEEE---ecCC----CCeEEEeeC----------CCeEEEEEccCC-----eeEE
Q 019482 134 GHLRIMHWPSLRIILDEPKA-HKSVLDMD---FSLD----SEFLATTST----------DGSARIWKTEDG-----VAWT 190 (340)
Q Consensus 134 g~i~~~d~~~~~~~~~~~~~-~~~i~~~~---~~~~----~~~l~~~~~----------d~~v~iwd~~~~-----~~~~ 190 (340)
+.|++.|..+.+.+..+.-. .+.+.+++ +..+ ..+|+.|+. .|.|.++++... +...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35788887777665443322 22444443 3332 456777652 288999999884 3322
Q ss_pred EeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEE
Q 019482 191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV 270 (340)
Q Consensus 191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 270 (340)
.......++|++++-- ++.. ++ +.++.|.+|++...+.+........++...+....++++++|.....+.+
T Consensus 82 i~~~~~~g~V~ai~~~-~~~l-----v~--~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGRL-----VV--AVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSL 153 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTEE-----EE--EETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEeecCcceEhhhh-CCEE-----EE--eecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEE
Confidence 2223346778888766 3331 22 22578999999887722222222233333444444669999998888998
Q ss_pred EeccC-ceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482 271 VDVKK-MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 271 ~d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
+..+. .+.+..+........++++.|-+|++.++.+..+|.+.++.++.
T Consensus 154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 154 LRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 86553 23233332222245689999987777999999999999999974
No 348
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.37 E-value=8.6e-05 Score=66.40 Aligned_cols=158 Identities=15% Similarity=0.131 Sum_probs=96.6
Q ss_pred cceeEEEecCCCCeEEEee------CCC--eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEE-------EEe
Q 019482 155 KSVLDMDFSLDSEFLATTS------TDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC-------TVQ 219 (340)
Q Consensus 155 ~~i~~~~~~~~~~~l~~~~------~d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~ 219 (340)
..+.+.+++|+|+.++... .|. .|.+++. .+.. ..+.... ......|+|+|..+.+.. +..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 3678899999999877665 243 4555554 2222 3343222 378899999988643210 011
Q ss_pred cCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEE---EeccCceEee----ccccccccccee
Q 019482 220 RGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV---VDVKKMEINH----WSKRLHLGTSIA 292 (340)
Q Consensus 220 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i---~d~~~~~~~~----~~~~~~~~~~i~ 292 (340)
....+.+.+.+++.+.... .....|..+.|||||..++... +++|++ -....++... .+.. .....+.
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~-~l~~~~~ 500 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGP-GLGDTAV 500 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeec-ccCCccc
Confidence 1233455555666554432 3355799999999999988876 477777 4444454111 1111 1133468
Q ss_pred eEEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482 293 LVEFCPTQRVVLTASKEWGAMITKLTVPAD 322 (340)
Q Consensus 293 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (340)
++.|..++.++ .+..++...+|.+.....
T Consensus 501 ~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~ 529 (591)
T PRK13616 501 SLDWRTGDSLV-VGRSDPEHPVWYVNLDGS 529 (591)
T ss_pred cceEecCCEEE-EEecCCCCceEEEecCCc
Confidence 89999999855 556666677888877654
No 349
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.36 E-value=0.00058 Score=58.06 Aligned_cols=205 Identities=15% Similarity=0.165 Sum_probs=107.8
Q ss_pred EEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeecccc-CCCCCCCCCeEEEEEec-----CC---CeE
Q 019482 57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKK-MPPLQDAGPQKCLSFSV-----DG---SRF 127 (340)
Q Consensus 57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~-----~~---~~l 127 (340)
..++...++|++++.|.-| ++|.|..+|.+.|.|++....+......+ .........++++.|+. |+ -.+
T Consensus 80 ~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 80 TLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp EEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred hheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 3455567899999998555 89999999999999998887665532222 11222456788888874 33 378
Q ss_pred EEccCCCcEEEEeCC--C-Ccee----eccccCccceeEEE-ecCC---------------------CCeEEEeeCCCeE
Q 019482 128 AAGGVDGHLRIMHWP--S-LRII----LDEPKAHKSVLDMD-FSLD---------------------SEFLATTSTDGSA 178 (340)
Q Consensus 128 ~~~~~dg~i~~~d~~--~-~~~~----~~~~~~~~~i~~~~-~~~~---------------------~~~l~~~~~d~~v 178 (340)
++|...|.+.+|.+. . +... .....+.++|..+. ++.+ ..+++.+ .+..+
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~i 237 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDI 237 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccce
Confidence 889999999999874 1 1111 11112333443333 2211 1134444 46789
Q ss_pred EEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC----CCeeEEEECC
Q 019482 179 RIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR----KPASVLSISL 254 (340)
Q Consensus 179 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~----~~i~~~~~s~ 254 (340)
+++...+.+...... ........+.+-+-.....-.+++.-..+|.+++|.+...+.+....... ..+....+++
T Consensus 238 rv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~ 316 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR 316 (395)
T ss_dssp EEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T
T ss_pred EEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECC
Confidence 999998877765554 22123334445321101112235555679999999999988887776543 2344567788
Q ss_pred CCCEEEEeeC
Q 019482 255 DGKYLAMGSK 264 (340)
Q Consensus 255 ~~~~l~~~~~ 264 (340)
+|..++..+.
T Consensus 317 ~Gdi~~~~gp 326 (395)
T PF08596_consen 317 NGDIFYWTGP 326 (395)
T ss_dssp TS-EEEE-SS
T ss_pred CCCEEEEeCc
Confidence 8887766654
No 350
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.9e-06 Score=72.66 Aligned_cols=94 Identities=17% Similarity=0.185 Sum_probs=80.6
Q ss_pred CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCcccee-EEEecCCCCeEEEeeCCCeEEEEEccCCeeEEE
Q 019482 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL-DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF 191 (340)
Q Consensus 113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~ 191 (340)
..+.-+.|+|.-.+||.+..+|.|.+..+. .+.+..++-+...++ +++|.|||+.|+.|-.||+|++.|++++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 567889999999999999999999999987 777877875666666 999999999999999999999999999988887
Q ss_pred eecCCCCceeeEEEcc
Q 019482 192 LTRNSDEKIELCRFSK 207 (340)
Q Consensus 192 ~~~~~~~~v~~~~~~~ 207 (340)
........|.++-|++
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 5444556788888874
No 351
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.34 E-value=0.00073 Score=59.82 Aligned_cols=235 Identities=11% Similarity=0.084 Sum_probs=133.0
Q ss_pred CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCe-EEEEEecCCCeEEEcc---------CCCcEEEEeCCCCc
Q 019482 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQ-KCLSFSVDGSRFAAGG---------VDGHLRIMHWPSLR 145 (340)
Q Consensus 76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~---------~dg~i~~~d~~~~~ 145 (340)
..++.++.++.|.-+|.++++...+....... .....+ ....+. + ..++.++ .++.+..+|..+++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~--~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~ 186 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQV--PPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGK 186 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCc--CcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCc
Confidence 67888888999999999999887766432110 000000 011111 2 3444443 36789999999998
Q ss_pred eeeccccCcc--------------------ce-eEEEecCCCCeEEEeeCCC------------------eEEEEEccCC
Q 019482 146 IILDEPKAHK--------------------SV-LDMDFSLDSEFLATTSTDG------------------SARIWKTEDG 186 (340)
Q Consensus 146 ~~~~~~~~~~--------------------~i-~~~~~~~~~~~l~~~~~d~------------------~v~iwd~~~~ 186 (340)
...+...... .+ ....+.+.+..++.++.++ .|.-.|.++|
T Consensus 187 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG 266 (488)
T cd00216 187 LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG 266 (488)
T ss_pred eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC
Confidence 8776543211 01 1234444556777776554 7999999999
Q ss_pred eeEEEeecCCCC-----ceeeEEEc----cCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCC
Q 019482 187 VAWTFLTRNSDE-----KIELCRFS----KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK 257 (340)
Q Consensus 187 ~~~~~~~~~~~~-----~v~~~~~~----~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~ 257 (340)
+.+-........ ......+. -++... ..++.++.++.+...|.++++.+-...... ..+..+| .
T Consensus 267 ~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~--~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~ 339 (488)
T cd00216 267 KVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPV--PAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--G 339 (488)
T ss_pred CEEEEeeCCCCCCcccccCCCCeEEeccccCCCee--EEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--c
Confidence 988776532210 00111111 123211 125677789999999999999875544321 1233444 2
Q ss_pred EEEEe------------------eCCCcEEEEeccCceEeecccccccc------cceeeEEEecCCeEEEEEecCCcEE
Q 019482 258 YLAMG------------------SKDGDICVVDVKKMEINHWSKRLHLG------TSIALVEFCPTQRVVLTASKEWGAM 313 (340)
Q Consensus 258 ~l~~~------------------~~dg~i~i~d~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~dg~i~ 313 (340)
.++.+ ..+|.+.-.|+.+++.+-........ .+...-.....+..|+.++.||.++
T Consensus 340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ 419 (488)
T cd00216 340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFR 419 (488)
T ss_pred eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEE
Confidence 33332 24678889999998876554322000 1111111112456788888888888
Q ss_pred EEEecCCC
Q 019482 314 ITKLTVPA 321 (340)
Q Consensus 314 iw~~~~~~ 321 (340)
.++.+...
T Consensus 420 ald~~tG~ 427 (488)
T cd00216 420 AFDATTGK 427 (488)
T ss_pred EEECCCCc
Confidence 77765443
No 352
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.33 E-value=0.0016 Score=56.59 Aligned_cols=224 Identities=16% Similarity=0.152 Sum_probs=118.0
Q ss_pred eeEEEEcCCCCeEEEE-ecCC----CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC-------
Q 019482 66 PMTIAVNPSGDDFVCS-TTNG----GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------- 133 (340)
Q Consensus 66 v~~~~~~~~~~~l~~~-~~d~----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------- 133 (340)
+....++|+|+++|.+ +..| .++++|+.+++........ .....+.|.++++.|+....+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--------~~~~~~~W~~d~~~~~y~~~~~~~~~~~ 197 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--------PKFSSVSWSDDGKGFFYTRFDEDQRTSD 197 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--------EESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--------cccceEEEeCCCCEEEEEEeCccccccc
Confidence 3467899999998865 3334 6999999998765433221 112349999998876655432
Q ss_pred ----CcEEEEeCCCCcee--eccccCcc-c-eeEEEecCCCCeEEEeeC---C-CeEEEEEccCC----eeEEEeecCCC
Q 019482 134 ----GHLRIMHWPSLRII--LDEPKAHK-S-VLDMDFSLDSEFLATTST---D-GSARIWKTEDG----VAWTFLTRNSD 197 (340)
Q Consensus 134 ----g~i~~~d~~~~~~~--~~~~~~~~-~-i~~~~~~~~~~~l~~~~~---d-~~v~iwd~~~~----~~~~~~~~~~~ 197 (340)
..|+.|.+.+.... ..+..... . ...+..++|+++++..+. + ..+.+.++..+ .....+.....
T Consensus 198 ~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 198 SGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 23788888765432 22322222 2 567889999998765432 2 45788888764 23334433333
Q ss_pred CceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE---EeeeeccCCCeeEEEECCCCCEEEEe-eCCC--cEEEE
Q 019482 198 EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---IGHKRLLRKPASVLSISLDGKYLAMG-SKDG--DICVV 271 (340)
Q Consensus 198 ~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg--~i~i~ 271 (340)
+....+... +..+++. .--....+.|...++..... ...+..+...+.-..+...+++|+.. ..++ .|+++
T Consensus 278 ~~~~~v~~~--~~~~yi~-Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 278 GVEYYVDHH--GDRLYIL-TNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp S-EEEEEEE--TTEEEEE-E-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred ceEEEEEcc--CCEEEEe-eCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEE
Confidence 333444443 3332211 11233457788888887652 22444444433333334444455544 3443 58899
Q ss_pred eccCceEeecccccccccceeeEEEecCCe
Q 019482 272 DVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (340)
Q Consensus 272 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 301 (340)
++..+.....+.... ...|..+...++++
T Consensus 355 ~~~~~~~~~~~~~p~-~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 355 DLDDGKESREIPLPE-AGSVSGVSGDFDSD 383 (414)
T ss_dssp ETT-TEEEEEEESSS-SSEEEEEES-TT-S
T ss_pred ECCCCcEEeeecCCc-ceEEeccCCCCCCC
Confidence 998333333332222 23466665555554
No 353
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.33 E-value=0.0015 Score=56.34 Aligned_cols=211 Identities=13% Similarity=0.155 Sum_probs=106.6
Q ss_pred EEEcCCCCeEEEEecC----------C-CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEE
Q 019482 69 IAVNPSGDDFVCSTTN----------G-GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR 137 (340)
Q Consensus 69 ~~~~~~~~~l~~~~~d----------~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 137 (340)
++.+|.|--+|....+ . .|+||+..... ...+.- .. +.+.++.|+.+. .|++...||.++
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~l-l~~i~w------~~-~~iv~~~wt~~e-~LvvV~~dG~v~ 104 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKL-LSSIPW------DS-GRIVGMGWTDDE-ELVVVQSDGTVR 104 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCE-eEEEEE------CC-CCEEEEEECCCC-eEEEEEcCCEEE
Confidence 4455555555544333 2 38888876543 333322 12 789999998865 555667899999
Q ss_pred EEeCCCCceeecccc--Cccce-----eEEEecCCCCeEEEeeCCCeEEEEEccCCe-eEEEeecCCCC--------cee
Q 019482 138 IMHWPSLRIILDEPK--AHKSV-----LDMDFSLDSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDE--------KIE 201 (340)
Q Consensus 138 ~~d~~~~~~~~~~~~--~~~~i-----~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~--------~v~ 201 (340)
+||+.. +....+.. ....| ....+..+| ++.-..++.+.+.+--... ....+...... ...
T Consensus 105 vy~~~G-~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~ 181 (410)
T PF04841_consen 105 VYDLFG-EFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWT 181 (410)
T ss_pred EEeCCC-ceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccc
Confidence 999863 33111110 01122 222333345 3333334555444322211 11111100000 000
Q ss_pred e-EEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEee
Q 019482 202 L-CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH 280 (340)
Q Consensus 202 ~-~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 280 (340)
. ..++.+... .+....++.+.+.+-...+. ....+++..+++||+|+++|.-..+|.+.+....-.+...
T Consensus 182 ~i~~l~~~~~~-----~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~ 252 (410)
T PF04841_consen 182 VIPLLSSDRVV-----EILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLC 252 (410)
T ss_pred cceEeecCcce-----EEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeE
Confidence 0 112222221 11222234444333322111 1123589999999999999999999999998776555554
Q ss_pred cccccccccceeeEEEecCCe
Q 019482 281 WSKRLHLGTSIALVEFCPTQR 301 (340)
Q Consensus 281 ~~~~~~~~~~i~~~~~~~~~~ 301 (340)
.+.... ......+.|.-+..
T Consensus 253 e~~~~~-~~~p~~~~WCG~da 272 (410)
T PF04841_consen 253 EFDTDS-KSPPKQMAWCGNDA 272 (410)
T ss_pred EeecCc-CCCCcEEEEECCCc
Confidence 443332 34667777776544
No 354
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.32 E-value=0.00048 Score=53.94 Aligned_cols=241 Identities=14% Similarity=0.074 Sum_probs=134.6
Q ss_pred eeEEEEcCCC-CeEEEEecCCC-EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC-----CcEEE
Q 019482 66 PMTIAVNPSG-DDFVCSTTNGG-CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRI 138 (340)
Q Consensus 66 v~~~~~~~~~-~~l~~~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~ 138 (340)
-..++|+|.. .-++.+-.-|+ ..++|....+........... | ---.=.|||||.+|+..-.| |.|-+
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~R---H--fyGHGvfs~dG~~LYATEndfd~~rGViGv 144 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGR---H--FYGHGVFSPDGRLLYATENDFDPNRGVIGV 144 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCc---e--eecccccCCCCcEEEeecCCCCCCCceEEE
Confidence 3468888854 45566666664 467888877655544332211 1 11123699999998876433 78999
Q ss_pred EeCCCC-ceeeccccCccceeEEEecCCCCeEEEeeC------------------CCeEEEEEccCCeeEEEeec---CC
Q 019482 139 MHWPSL-RIILDEPKAHKSVLDMDFSLDSEFLATTST------------------DGSARIWKTEDGVAWTFLTR---NS 196 (340)
Q Consensus 139 ~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------------------d~~v~iwd~~~~~~~~~~~~---~~ 196 (340)
||.+.+ +.+-.+..+.-....+.+.+||+.++.+.- .-++.+.|..+|+.+.+... .+
T Consensus 145 Yd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~ 224 (366)
T COG3490 145 YDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLR 224 (366)
T ss_pred EecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhh
Confidence 998743 334445555446778999999999887642 11233444444444333221 12
Q ss_pred CCceeeEEEccCCCcceEEEEEecC-CcceEEEEECCCCcEEeeeecc-------CCCeeEEEECCCCCEEEEee-CCCc
Q 019482 197 DEKIELCRFSKDGTKPFLFCTVQRG-DKALLAVYDISTWNKIGHKRLL-------RKPASVLSISLDGKYLAMGS-KDGD 267 (340)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~-~dg~ 267 (340)
...+..++..+||...+- |-.-+- .|.-..+=-...++++..+... ...|-+++.+.+..+++..+ ..+.
T Consensus 225 ~lSiRHld~g~dgtvwfg-cQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~ 303 (366)
T COG3490 225 QLSIRHLDIGRDGTVWFG-CQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNR 303 (366)
T ss_pred hcceeeeeeCCCCcEEEE-EEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCe
Confidence 235777788888774211 111111 1111111112233333322221 24567788877655655554 4556
Q ss_pred EEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 268 ICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 268 i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
..+||..++..+...... ....++ +...-++..+.+|.+..+.-.
T Consensus 304 ~vi~da~tG~vv~~a~l~----daaGva--~~~~gf~vssg~G~~~~~s~~ 348 (366)
T COG3490 304 AVIWDAATGAVVSEAALP----DAAGVA--AAKGGFAVSSGQGRIIFYSRA 348 (366)
T ss_pred EEEEEcCCCcEEeccccc----ccccce--eccCceEEecCCceEEecccc
Confidence 889999999987653221 233333 334446677778888887543
No 355
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.1e-05 Score=65.56 Aligned_cols=157 Identities=12% Similarity=0.071 Sum_probs=100.7
Q ss_pred EEEEeCCCCceeeccccCccceeEEEecCCCC-eEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE
Q 019482 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (340)
Q Consensus 136 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (340)
+++.+-.+.+....+..+...|.+++|+|..+ ++..++.+..|+|.|+++...+..+..+ ..+++++|.-+....
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~h~-- 250 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDERHV-- 250 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccCCcce--
Confidence 66666555555555555666899999999766 7888999999999999999888877644 579999999988663
Q ss_pred EEEEecCCcceEEEEECCCCcEE-eeeec--cCCCeeEEE------ECCCCCEEEEeeCCCcEEEEeccCc--eEeeccc
Q 019482 215 FCTVQRGDKALLAVYDISTWNKI-GHKRL--LRKPASVLS------ISLDGKYLAMGSKDGDICVVDVKKM--EINHWSK 283 (340)
Q Consensus 215 ~~~~~~~~d~~i~i~d~~~~~~~-~~~~~--~~~~i~~~~------~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~ 283 (340)
+..|...|.|.+||++..+-. ..+.. ...+|..++ ..+.|.+++....+ +..|++... .....+.
T Consensus 251 --IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vle 326 (463)
T KOG1645|consen 251 --IYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLE 326 (463)
T ss_pred --eEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccc
Confidence 677788999999999976522 11111 122333332 22345555555443 666766432 2222222
Q ss_pred ccccccceeeEEEecCCe
Q 019482 284 RLHLGTSIALVEFCPTQR 301 (340)
Q Consensus 284 ~~~~~~~i~~~~~~~~~~ 301 (340)
... .+...+++..+-.+
T Consensus 327 le~-pG~cismqy~~~sn 343 (463)
T KOG1645|consen 327 LEP-PGICISMQYHGVSN 343 (463)
T ss_pred cCC-CcceeeeeecCccc
Confidence 222 34555666655333
No 356
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.28 E-value=0.0014 Score=53.65 Aligned_cols=221 Identities=14% Similarity=0.047 Sum_probs=126.6
Q ss_pred EEEEcCCCCeE-EEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCce
Q 019482 68 TIAVNPSGDDF-VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI 146 (340)
Q Consensus 68 ~~~~~~~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 146 (340)
+..|.++...| .+--..+.|.-|+..+++...-. ..+.+.++..-..+..|+++. ..+.+++.+++..
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~---------~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~ 97 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP---------SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGK 97 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE---------CCCCcccceeecCCCeEEEEc--cccEEEeccCCce
Confidence 34577776644 44445677888887755432211 223334444433444555443 2366777665554
Q ss_pred eeccccCc-----cceeEEEecCCCCeEEEeeC-----------CCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCC
Q 019482 147 ILDEPKAH-----KSVLDMDFSLDSEFLATTST-----------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210 (340)
Q Consensus 147 ~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~-----------d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (340)
...+.... ...+.+...|+|.+.++... -|.|+.+|. .+..+..+.. +-...+.++||||++
T Consensus 98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~-~~~~~NGla~SpDg~ 175 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD-DLTIPNGLAFSPDGK 175 (307)
T ss_pred eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC-cEEecCceEECCCCC
Confidence 22221111 25678899999987665444 133444443 4444444432 223567899999998
Q ss_pred cceEEEEEecCCcceEEEEECCC--Cc---E--EeeeeccCCCeeEEEECCCCCEEEEeeCCC-cEEEEeccCceEeecc
Q 019482 211 KPFLFCTVQRGDKALLAVYDIST--WN---K--IGHKRLLRKPASVLSISLDGKYLAMGSKDG-DICVVDVKKMEINHWS 282 (340)
Q Consensus 211 ~~~~~~~~~~~~d~~i~i~d~~~--~~---~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~ 282 (340)
.+ .++-+..+.|.-|++.. +. . ........+..-.++...+|.+.+++..+| .|.+|+.. ++.+..+
T Consensus 176 tl----y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i 250 (307)
T COG3386 176 TL----YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEI 250 (307)
T ss_pred EE----EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEE
Confidence 63 35556668888887762 11 1 111222334556677888888886555554 89999988 7777666
Q ss_pred cccccccceeeEEEe-cCCeEEEEEec
Q 019482 283 KRLHLGTSIALVEFC-PTQRVVLTASK 308 (340)
Q Consensus 283 ~~~~~~~~i~~~~~~-~~~~~l~~~~~ 308 (340)
.... ..+++++|- |+.+.|...+.
T Consensus 251 ~lP~--~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 251 KLPV--KRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred ECCC--CCCccceEeCCCcCEEEEEec
Confidence 5433 468888885 44555444443
No 357
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.25 E-value=6.2e-05 Score=64.76 Aligned_cols=166 Identities=17% Similarity=0.116 Sum_probs=88.1
Q ss_pred CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEe
Q 019482 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL 192 (340)
Q Consensus 113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~ 192 (340)
-.+..+.++|+|+++++ ..||.-.++........ ..+.-..+.|.+.+ .+|+-...++|.|+.--+.+....+
T Consensus 33 ~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k-----~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i 105 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNK-----AFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSI 105 (443)
T ss_dssp S--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEE-----EEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT---
T ss_pred cCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccc-----ccCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEE
Confidence 34678999999998888 45788888873332221 12345678899855 4666666889999632222222233
Q ss_pred ecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEe
Q 019482 193 TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD 272 (340)
Q Consensus 193 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 272 (340)
.... .+..+-. |.. +... .++.|.+||..+++.+..+... +|..+.|+++|.+++..+.+ .+.|++
T Consensus 106 ~~~~--~~~~If~---G~L-----L~~~-~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 106 KLPF--SVEKIFG---GNL-----LGVK-SSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILK 171 (443)
T ss_dssp --SS---EEEEE----SSS-----EEEE-ETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred cCCc--ccceEEc---CcE-----EEEE-CCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence 3222 2333322 664 3333 3448999999999988777643 38899999999999999865 588877
Q ss_pred ccCc--------eEeeccccccc-ccceeeEEEecC
Q 019482 273 VKKM--------EINHWSKRLHL-GTSIALVEFCPT 299 (340)
Q Consensus 273 ~~~~--------~~~~~~~~~~~-~~~i~~~~~~~~ 299 (340)
.... .....+...|. ...|.+..|..|
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED 207 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred ecchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence 5543 00001111121 357888888766
No 358
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.24 E-value=3.7e-05 Score=69.83 Aligned_cols=147 Identities=16% Similarity=0.103 Sum_probs=96.4
Q ss_pred CCeEEEe-eCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE--EEEEecCCcceEEEEECCCCc-EEeeee
Q 019482 166 SEFLATT-STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL--FCTVQRGDKALLAVYDISTWN-KIGHKR 241 (340)
Q Consensus 166 ~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~-~~~~~~ 241 (340)
.++|+.- .....|+-.|++.|+.+..+..+...++.. +.|+.+.--+ -..+.|-.++.+..||.|-.. .+....
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence 3444433 345789999999999999998766554444 4443221000 004666678899999998643 221111
Q ss_pred ----ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482 242 ----LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL 317 (340)
Q Consensus 242 ----~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~ 317 (340)
.......|++-+.+| +||+|+.+|.||+||- .+........+- +.||.+|..+.||++|++.+.. .+.+.+.
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~l-G~pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGL-GDPIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred ccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCC-CCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 123456777776666 8999999999999994 343333333333 6899999999999998877655 4555554
Q ss_pred c
Q 019482 318 T 318 (340)
Q Consensus 318 ~ 318 (340)
.
T Consensus 647 ~ 647 (794)
T PF08553_consen 647 L 647 (794)
T ss_pred e
Confidence 3
No 359
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.24 E-value=0.001 Score=55.57 Aligned_cols=182 Identities=10% Similarity=0.084 Sum_probs=104.3
Q ss_pred CCeEEEccC----------CCcEEEEeCCCC----ceeec--cccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCe
Q 019482 124 GSRFAAGGV----------DGHLRIMHWPSL----RIILD--EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV 187 (340)
Q Consensus 124 ~~~l~~~~~----------dg~i~~~d~~~~----~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~ 187 (340)
..+|++|.. .|.|.++++... ..+.. .....++|++++-- ++. |+.+. .+.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence 356776642 288999999874 12211 12334578887766 344 55444 5899999999887
Q ss_pred -eEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC-CcEEeeee--ccCCCeeEEEECCCCCEEEEee
Q 019482 188 -AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGHKR--LLRKPASVLSISLDGKYLAMGS 263 (340)
Q Consensus 188 -~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~ 263 (340)
....-.......+.++... +.+ ++.+.....+.++..+. ...+..+. .....++++.+-++++.++++.
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~--~~~-----I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D 191 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVF--KNY-----ILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD 191 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEE--TTE-----EEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE
T ss_pred cchhhheecceEEEEEEecc--ccE-----EEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc
Confidence 4443332233345555554 444 56666666666664332 22222222 2345578888876767999999
Q ss_pred CCCcEEEEeccC-------ce-EeecccccccccceeeE---EEecC--C------eEEEEEecCCcEEEE
Q 019482 264 KDGDICVVDVKK-------ME-INHWSKRLHLGTSIALV---EFCPT--Q------RVVLTASKEWGAMIT 315 (340)
Q Consensus 264 ~dg~i~i~d~~~-------~~-~~~~~~~~~~~~~i~~~---~~~~~--~------~~l~~~~~dg~i~iw 315 (340)
.+|.+.++.... +. .+......|.+..|+++ ++.|. + ..++.++.+|.|.+.
T Consensus 192 ~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 192 KDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp TTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred CCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 999999998763 22 33333445667788888 55551 2 248888899998844
No 360
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.23 E-value=2.6e-05 Score=67.86 Aligned_cols=118 Identities=13% Similarity=0.088 Sum_probs=88.2
Q ss_pred CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC
Q 019482 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (340)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~ 141 (340)
|...|.--+++..+++++.|+..|.+++|+-..+........ ...+.+.....+++..++|.|+..|.|.++.+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~------~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql 105 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE------GATGITCVRSVSSVEYLVAAGTASGRVSVFQL 105 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhccccc------CccceEEEEEecchhHhhhhhcCCceEEeehh
Confidence 345566667777899999999999999999877654322211 12355666778888889999999999999988
Q ss_pred CCCcee---ecc---ccCccceeEEEecCCCCeEEEeeCCCeEEEEEccC
Q 019482 142 PSLRII---LDE---PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED 185 (340)
Q Consensus 142 ~~~~~~---~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~ 185 (340)
...... ... ..|...|++++|++|+..+.+|...|+|..-.+..
T Consensus 106 ~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 106 NKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 653321 111 12445899999999999999999999999888776
No 361
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.15 E-value=0.00066 Score=60.91 Aligned_cols=187 Identities=13% Similarity=0.081 Sum_probs=103.8
Q ss_pred CCeeEEEEcCCCCeEEEEe------cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC----
Q 019482 64 GDPMTIAVNPSGDDFVCST------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---- 133 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---- 133 (340)
..+...+++|+|+.++... .|..-.||-...+.....+.. ......-.|+|||+.|.+....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~--------g~~~t~PsWspDG~~lw~v~dg~~~~ 421 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE--------GHSLTRPSWSLDADAVWVVVDGNTVV 421 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec--------CCCCCCceECCCCCceEEEecCcceE
Confidence 4578899999999887665 244344554332222222211 1235678999998877666422
Q ss_pred --------CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEE---EEccCCee-E---EEeecCCCC
Q 019482 134 --------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI---WKTEDGVA-W---TFLTRNSDE 198 (340)
Q Consensus 134 --------g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i---wd~~~~~~-~---~~~~~~~~~ 198 (340)
+.+.+.+++.++... .....|..+.|+|||..++... ++.|++ -....|.. + ..+......
T Consensus 422 ~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~ 497 (591)
T PRK13616 422 RVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGD 497 (591)
T ss_pred EEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCC
Confidence 234444544433322 2345799999999999988766 577777 34334431 1 112222333
Q ss_pred ceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec--cCCCeeEEEECCCCCEEEEeeCCCcEE
Q 019482 199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL--LRKPASVLSISLDGKYLAMGSKDGDIC 269 (340)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~ 269 (340)
.+.++.|.+++... +...+.+..+...++...... .+.. ...++..++=+++ .++....++.+.
T Consensus 498 ~~~~l~W~~~~~L~----V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 498 TAVSLDWRTGDSLV----VGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred ccccceEecCCEEE----EEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 46889999999831 233344445555555533221 1122 1345666666653 455555666333
No 362
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.14 E-value=6.6e-05 Score=65.50 Aligned_cols=201 Identities=10% Similarity=0.068 Sum_probs=122.6
Q ss_pred CCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccc-cCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeE
Q 019482 111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW 189 (340)
Q Consensus 111 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~ 189 (340)
+...|.--+++..+++++.|+.-|.+++|+-..++...... +.+..+.....+++..++|.|+..|.|.++.+..+.+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 33455555667788999999999999999976665433222 24445667778888899999999999999998764432
Q ss_pred E-----EeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc----EEeeeeccCCCeeEEEECCCCCEEE
Q 019482 190 T-----FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN----KIGHKRLLRKPASVLSISLDGKYLA 260 (340)
Q Consensus 190 ~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~ 260 (340)
. .....|...|++++|++++.. +++|...|+|.+-.+.+.. ..+.+....+.|-.+... ++.+|+
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k-----~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLV 185 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMK-----LYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLV 185 (726)
T ss_pred cceeeccccccCCceEEEEEecccccE-----EeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehH
Confidence 2 122234668999999999998 8899999999988887621 122233334556555543 333333
Q ss_pred EeeCCCcEEEEeccCceEeeccccccccc-ceeeEEEecC----CeEEEEEecCCcEEEEEecCCC
Q 019482 261 MGSKDGDICVVDVKKMEINHWSKRLHLGT-SIALVEFCPT----QRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 261 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~i~~~~~~~~----~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
+... . -.+++.+.....+.-.... .+ .-.+.+|-|. .+-.+.++.= ..|+|..+..+
T Consensus 186 Stl~-r-~~Lc~tE~eti~QIG~k~R-~~~~~~GACF~~g~~~~q~~~IycaRP-G~RlWead~~G 247 (726)
T KOG3621|consen 186 STLT-R-CILCQTEAETITQIGKKPR-KSLIDFGACFFPGQCKAQKPQIYCARP-GLRLWEADFAG 247 (726)
T ss_pred hhhh-h-hheeecchhHHHHhcCCCc-CCccccceEEeeccccCCCceEEEecC-CCceEEeecce
Confidence 3322 2 3345554433222211111 11 1234556553 2334444443 35788877544
No 363
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.9e-05 Score=67.90 Aligned_cols=93 Identities=23% Similarity=0.200 Sum_probs=77.4
Q ss_pred ceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCee-EEEECCCCCEEEEeeCCCcEEEEeccCce
Q 019482 199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPAS-VLSISLDGKYLAMGSKDGDICVVDVKKME 277 (340)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 277 (340)
.+..+.|+|.-.. ++....+|.+.+..+. .+.+..+..++.+++ +++|.|||+.|++|-.||+|++.|..++.
T Consensus 22 ~i~~~ewnP~~dL-----iA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 22 NIKRIEWNPKMDL-----IATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ceEEEEEcCccch-----hheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 4788999999886 7888889999999988 777778887777777 99999999999999999999999999988
Q ss_pred EeecccccccccceeeEEEec
Q 019482 278 INHWSKRLHLGTSIALVEFCP 298 (340)
Q Consensus 278 ~~~~~~~~~~~~~i~~~~~~~ 298 (340)
.+....... ...|..+.|.+
T Consensus 96 ~l~~~~~s~-e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLFSV-ETDISKGIWDR 115 (665)
T ss_pred ceecccccc-ccchheeeccc
Confidence 776642222 56788888864
No 364
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.11 E-value=0.0034 Score=51.31 Aligned_cols=205 Identities=14% Similarity=0.133 Sum_probs=123.6
Q ss_pred eeEEEEcCCCCeEEEEecC--CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeCC
Q 019482 66 PMTIAVNPSGDDFVCSTTN--GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWP 142 (340)
Q Consensus 66 v~~~~~~~~~~~l~~~~~d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~ 142 (340)
...++++.||++++...-. ..|.|-|+...+....+... . |.-.-|. .+-|.+-+.||.+.-..+.
T Consensus 97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P---------G--C~~iyP~~~~~F~~lC~DGsl~~v~Ld 165 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP---------G--CWLIYPSGNRGFSMLCGDGSLLTVTLD 165 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT---------S--EEEEEEEETTEEEEEETTSCEEEEEET
T ss_pred ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC---------C--EEEEEecCCCceEEEecCCceEEEEEC
Confidence 4457888899988765443 46889999888876655321 1 2222232 2457777889999888887
Q ss_pred -CCceeecc----ccCccce-eEEEecCCCCeEEEeeCCCeEEEEEccCCeeEE--EeecCC---------CCceeeEEE
Q 019482 143 -SLRIILDE----PKAHKSV-LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT--FLTRNS---------DEKIELCRF 205 (340)
Q Consensus 143 -~~~~~~~~----~~~~~~i-~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~---------~~~v~~~~~ 205 (340)
.|+...+. ....+++ ..-++...+..++.-+.+|.|+--|+....... .+.... .+.-.-+++
T Consensus 166 ~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~ 245 (342)
T PF06433_consen 166 ADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAY 245 (342)
T ss_dssp STSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEE
T ss_pred CCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeee
Confidence 44443221 1111222 233444555566667889999999987654321 121100 012345778
Q ss_pred ccCCCcceEEEEEecCCc-------ceEEEEECCCCcEEeeeeccCCCeeEEEECCCCC-EEEEe-eCCCcEEEEeccCc
Q 019482 206 SKDGTKPFLFCTVQRGDK-------ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK-YLAMG-SKDGDICVVDVKKM 276 (340)
Q Consensus 206 ~~~~~~~~~~~~~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~-~~dg~i~i~d~~~~ 276 (340)
++....+|+ +.-.+.+ .+|-++|+.+++.+..+... .++.++..+.+.+ +|++. ..++.|.+||..++
T Consensus 246 ~~~~~rlyv--LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 246 HAASGRLYV--LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp ETTTTEEEE--EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred ccccCeEEE--EecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 877766554 3333333 36889999999988777753 4688999998765 55544 45789999999999
Q ss_pred eEeecccc
Q 019482 277 EINHWSKR 284 (340)
Q Consensus 277 ~~~~~~~~ 284 (340)
+.++.+..
T Consensus 323 k~~~~~~~ 330 (342)
T PF06433_consen 323 KLVRSIEQ 330 (342)
T ss_dssp -EEEEE--
T ss_pred cEEeehhc
Confidence 99887754
No 365
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.09 E-value=0.0053 Score=52.94 Aligned_cols=139 Identities=11% Similarity=0.125 Sum_probs=80.9
Q ss_pred EEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCC
Q 019482 119 SFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE 198 (340)
Q Consensus 119 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~ 198 (340)
.++.+....+....++.+.+.+-...+. ....+++..++.||+++++|.-..+|.+.+...+-.+....+......
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~ 260 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKS 260 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCC
Confidence 3444555555555556666444322211 223458999999999999999999999999887666666666554445
Q ss_pred ceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE
Q 019482 199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI 278 (340)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 278 (340)
....+.|.-+.. .+..|. ..+........ .+.|.-++..++..-.|| +||+.-...+.
T Consensus 261 ~p~~~~WCG~da--------------v~l~~~----~~l~lvg~~~~---~~~~~~~~~~~l~~E~DG-~riit~~~~~~ 318 (410)
T PF04841_consen 261 PPKQMAWCGNDA--------------VVLSWE----DELLLVGPDGD---SISFWYDGPVILVSEIDG-VRIITSTSHEF 318 (410)
T ss_pred CCcEEEEECCCc--------------EEEEeC----CEEEEECCCCC---ceEEeccCceEEeccCCc-eEEEeCCceEE
Confidence 566777765543 233331 11111111111 134444444555555566 88887776666
Q ss_pred eeccc
Q 019482 279 NHWSK 283 (340)
Q Consensus 279 ~~~~~ 283 (340)
++.+.
T Consensus 319 l~~Vp 323 (410)
T PF04841_consen 319 LQRVP 323 (410)
T ss_pred EEECC
Confidence 65543
No 366
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.03 E-value=0.0034 Score=54.60 Aligned_cols=200 Identities=15% Similarity=0.089 Sum_probs=107.9
Q ss_pred eEEEEEecCCCeEEEc-cCC----CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCC-----------CeE
Q 019482 115 QKCLSFSVDGSRFAAG-GVD----GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-----------GSA 178 (340)
Q Consensus 115 v~~~~~~~~~~~l~~~-~~d----g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----------~~v 178 (340)
+....++|++++++.+ +.. ..++++|+++++.+....... ....+.|.++++.|+....+ ..|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3467899999988765 233 359999999997654332221 22339999998877665533 247
Q ss_pred EEEEccCCeeE--EEeecCCCCc-eeeEEEccCCCcceEEEEEecCCc-ceEEEEECCCC----cEEeeeeccCCCe-eE
Q 019482 179 RIWKTEDGVAW--TFLTRNSDEK-IELCRFSKDGTKPFLFCTVQRGDK-ALLAVYDISTW----NKIGHKRLLRKPA-SV 249 (340)
Q Consensus 179 ~iwd~~~~~~~--~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~d-~~i~i~d~~~~----~~~~~~~~~~~~i-~~ 249 (340)
+.|.+.+.... ..+....... ...+..+++++++++ ....+.+ ..+.+.|+..+ .....+......+ ..
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i--~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFI--SSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEE--EEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEE--EEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 77887665432 3333222222 568889999986443 3444444 78999999875 2222333333333 33
Q ss_pred EEECCCCCEEEEee---CCCcEEEEeccCceE---eeccccccc-ccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482 250 LSISLDGKYLAMGS---KDGDICVVDVKKMEI---NHWSKRLHL-GTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 250 ~~~s~~~~~l~~~~---~dg~i~i~d~~~~~~---~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
+... .+.+++... .++.|...++..... ...+ ..+. ...+..+... .+.+++....++.-+|.-++..
T Consensus 283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l-~~~~~~~~l~~~~~~-~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVL-IPEDEDVSLEDVSLF-KDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEE-E--SSSEEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEE-cCCCCceeEEEEEEE-CCEEEEEEEECCccEEEEEECC
Confidence 3333 444444432 245677777776542 1122 1221 1245555543 3355666666665444444333
No 367
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.99 E-value=0.006 Score=50.06 Aligned_cols=190 Identities=12% Similarity=0.004 Sum_probs=107.0
Q ss_pred CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-----C----Cc
Q 019482 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----D----GH 135 (340)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d----g~ 135 (340)
.+.++..-..+..|++ +..+ +.+++.+.+.....+.... .-......+.+...|+|.+-+.... . ..
T Consensus 67 ~~~~~~~~d~~g~Lv~-~~~g-~~~~~~~~~~~~t~~~~~~--~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~ 142 (307)
T COG3386 67 GFSSGALIDAGGRLIA-CEHG-VRLLDPDTGGKITLLAEPE--DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPT 142 (307)
T ss_pred CcccceeecCCCeEEE-Eccc-cEEEeccCCceeEEecccc--CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCc
Confidence 3444433333333443 3444 7788876555422221111 0112245567888899876655433 0 11
Q ss_pred EEEEeCC-CCceeeccccCccceeEEEecCCCCeEEEeeC-CCeEEEEEccC------CeeEEEeecCCCCceeeEEEcc
Q 019482 136 LRIMHWP-SLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKTED------GVAWTFLTRNSDEKIELCRFSK 207 (340)
Q Consensus 136 i~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~~~------~~~~~~~~~~~~~~v~~~~~~~ 207 (340)
-.+|-+. .+........+-..-+.++||||++.|..+.. .+.|.-|++.. ++..........+..-.++...
T Consensus 143 G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa 222 (307)
T COG3386 143 GSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA 222 (307)
T ss_pred ceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC
Confidence 1344444 44444444443445678999999988777754 47788887752 1111222222345566777888
Q ss_pred CCCcceEEEEEecCCc-ceEEEEECCCCcEEeeeeccCCCeeEEEEC-CCCCEEEEeeC
Q 019482 208 DGTKPFLFCTVQRGDK-ALLAVYDISTWNKIGHKRLLRKPASVLSIS-LDGKYLAMGSK 264 (340)
Q Consensus 208 ~~~~~~~~~~~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~ 264 (340)
+|.. -..+..+ +.|..|+.. ++.+..+......+++++|- |+.+.|++.+.
T Consensus 223 dG~l-----w~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 223 DGNL-----WVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCCE-----EEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 8874 2233333 389999999 88888888776677778774 45555555443
No 368
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.95 E-value=1.3e-05 Score=60.33 Aligned_cols=149 Identities=15% Similarity=0.048 Sum_probs=89.4
Q ss_pred eEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee-eeccCCC
Q 019482 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRLLRKP 246 (340)
Q Consensus 168 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~ 246 (340)
.+...+.|+.|+-++++..+....-...+.....-+.+ +.. ++.++.++.|.+|.......... .......
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~---~~~-----~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~ 103 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA---SAK-----LMVGTSDGAVYVFNWNLEGAHSDRVCSGEES 103 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeeccc---Cce-----EEeecccceEEEecCCccchHHHhhhccccc
Confidence 34455678888888876543321111111111111112 222 78889999999998873221111 1111222
Q ss_pred eeEE-EECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEE--ecCCcEEEEEecCCCCC
Q 019482 247 ASVL-SISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA--SKEWGAMITKLTVPADW 323 (340)
Q Consensus 247 i~~~-~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~iw~~~~~~~~ 323 (340)
+.++ .--.++.+.++++.||.|+.|++...+.+.... .|...++..+..+..++.++.+ |.|..++.|++..-...
T Consensus 104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g-~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~ 182 (238)
T KOG2444|consen 104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG-QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDE 182 (238)
T ss_pred ceeccccccccceeEEeccCCceeeeccccCceeeeec-cccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhcc
Confidence 3222 222355688999999999999999888776542 3422567777777777888888 88888999998755443
Q ss_pred CC
Q 019482 324 KG 325 (340)
Q Consensus 324 ~~ 325 (340)
.+
T Consensus 183 ~~ 184 (238)
T KOG2444|consen 183 SP 184 (238)
T ss_pred Cc
Confidence 33
No 369
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.93 E-value=0.00097 Score=60.98 Aligned_cols=141 Identities=15% Similarity=0.088 Sum_probs=99.0
Q ss_pred CCeEEEc-cCCCcEEEEeCCCCceeeccccCccc-eeEEEecCC-------CCeEEEeeCCCeEEEEEccCCe--eEEE-
Q 019482 124 GSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHKS-VLDMDFSLD-------SEFLATTSTDGSARIWKTEDGV--AWTF- 191 (340)
Q Consensus 124 ~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~-i~~~~~~~~-------~~~l~~~~~d~~v~iwd~~~~~--~~~~- 191 (340)
.++|+.- .....|+-.|++.|+.+.....+... |.. +.|+ ...-+.|-.+..+..||.|-.. .+..
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence 3344433 34577999999999998887766543 444 4443 2334566678899999998643 2211
Q ss_pred e-ecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEE
Q 019482 192 L-TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV 270 (340)
Q Consensus 192 ~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 270 (340)
. .-.......|++-+.+|. ++.++.+|.|++||--..+....+.+.+.+|..+..+.||++|++.+. ..|.+
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~G~------iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlL 643 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTEDGY------IAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLL 643 (794)
T ss_pred ccccccCCCceEEEecCCce------EEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEE
Confidence 1 112334578888888888 799999999999995444444556777899999999999999988764 56777
Q ss_pred Eec
Q 019482 271 VDV 273 (340)
Q Consensus 271 ~d~ 273 (340)
++.
T Consensus 644 i~t 646 (794)
T PF08553_consen 644 IDT 646 (794)
T ss_pred EEE
Confidence 775
No 370
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.92 E-value=0.0078 Score=49.09 Aligned_cols=221 Identities=14% Similarity=0.112 Sum_probs=123.6
Q ss_pred CCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeecc--
Q 019482 73 PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE-- 150 (340)
Q Consensus 73 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-- 150 (340)
..++.|+.|+.+| +.+++........... +...|..+...|+-+.|++-+ |+.+.++++.........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--------~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~ 74 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--------KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAP 74 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--------ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccc
Confidence 3578999999999 9999983322222221 224489999999877666654 599999998764433311
Q ss_pred ------------ccCccceeEEE--ecCCCCeEEEeeCCCeEEEEEccCC-----eeEEEeecCCCCceeeEEEccCCCc
Q 019482 151 ------------PKAHKSVLDMD--FSLDSEFLATTSTDGSARIWKTEDG-----VAWTFLTRNSDEKIELCRFSKDGTK 211 (340)
Q Consensus 151 ------------~~~~~~i~~~~--~~~~~~~l~~~~~d~~v~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (340)
......+..++ -.+.+...+......+|.+|..... +..+++. ....+.+++|.++ .
T Consensus 75 ~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~--lp~~~~~i~~~~~--~ 150 (275)
T PF00780_consen 75 LAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS--LPDPPSSIAFLGN--K 150 (275)
T ss_pred ccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE--cCCCcEEEEEeCC--E
Confidence 11122344444 1123333333444568999888653 3445554 3356899999843 2
Q ss_pred ceEEEEEecCCcceEEEEECCCCcEEeeeeccC------------CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEe
Q 019482 212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR------------KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN 279 (340)
Q Consensus 212 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~------------~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~ 279 (340)
+..+. .....+.|+.++.......... .++..+.. +++.+|++- |..-.+.|. .|++.
T Consensus 151 -----i~v~~-~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~ 220 (275)
T PF00780_consen 151 -----ICVGT-SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPS 220 (275)
T ss_pred -----EEEEe-CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcC
Confidence 23333 4558888998766543322111 23333333 345566543 333333344 34333
Q ss_pred ecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 280 HWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 280 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
+.. ...-.....++++. ..+|+..+.+ .|.||++....
T Consensus 221 r~~-~i~W~~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~ 258 (275)
T PF00780_consen 221 RKS-TIQWSSAPQSVAYS--SPYLIAFSSN-SIEVRSLETGE 258 (275)
T ss_pred ccc-EEEcCCchhEEEEE--CCEEEEECCC-EEEEEECcCCc
Confidence 211 11112356666664 3577777664 59999997665
No 371
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.87 E-value=0.0067 Score=50.61 Aligned_cols=230 Identities=11% Similarity=0.016 Sum_probs=109.5
Q ss_pred eeEEEEcCCCCeEEEEe-cCC--CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482 66 PMTIAVNPSGDDFVCST-TNG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (340)
Q Consensus 66 v~~~~~~~~~~~l~~~~-~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 142 (340)
.+.=+|.++|+.|+.++ .+| .+.+.|+.+++..+..... . .......++|+.+.++.......|+-.|++
T Consensus 38 F~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~------g-~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~ 110 (386)
T PF14583_consen 38 FYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP------G-DNTFGGFLSPDDRALYYVKNGRSLRRVDLD 110 (386)
T ss_dssp TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS--------B-TTT-EE-TTSSEEEEEETTTEEEEEETT
T ss_pred ecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCC------C-CCccceEEecCCCeEEEEECCCeEEEEECC
Confidence 33456778897666544 454 5666677766543222111 1 112235667888887665555688999999
Q ss_pred CCceeeccccCccceeEEEec--CCCCeEEEee---C-------------------CCeEEEEEccCCeeEEEeecCCCC
Q 019482 143 SLRIILDEPKAHKSVLDMDFS--LDSEFLATTS---T-------------------DGSARIWKTEDGVAWTFLTRNSDE 198 (340)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~---~-------------------d~~v~iwd~~~~~~~~~~~~~~~~ 198 (340)
+.+....+.-...-+-...|. .|+..++-.- . ...|.--|+++|+....+. ...
T Consensus 111 T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~--~~~ 188 (386)
T PF14583_consen 111 TLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE--DTD 188 (386)
T ss_dssp T--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE--ESS
T ss_pred cCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe--cCc
Confidence 987654443334434334553 3555544321 1 1235556777777655554 334
Q ss_pred ceeeEEEccCCCcceEEEEEecCCcce-EEEEECCCC-cEEeeeecc--CCCeeEEEECCCCCEEEEee-----CCCcEE
Q 019482 199 KIELCRFSKDGTKPFLFCTVQRGDKAL-LAVYDISTW-NKIGHKRLL--RKPASVLSISLDGKYLAMGS-----KDGDIC 269 (340)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~~~~~~~d~~-i~i~d~~~~-~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~-----~dg~i~ 269 (340)
.+..+.|+|....++++|- -+-.+.. -+||-+++. .....+..+ ...+..=-|.|||..|..-+ .+..|.
T Consensus 189 wlgH~~fsP~dp~li~fCH-EGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~ 267 (386)
T PF14583_consen 189 WLGHVQFSPTDPTLIMFCH-EGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIA 267 (386)
T ss_dssp -EEEEEEETTEEEEEEEEE--S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEE
T ss_pred cccCcccCCCCCCEEEEec-cCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEE
Confidence 6889999998877555442 2333331 345544422 111122211 23344456899998776532 244677
Q ss_pred EEeccCceEeecccccccccceeeEEEecCCeEEEEEecC
Q 019482 270 VVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE 309 (340)
Q Consensus 270 i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 309 (340)
-+|+.+++..... . ......+--++||++++-=+.|
T Consensus 268 ~~d~~t~~~~~~~-~---~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 268 GYDPDTGERRRLM-E---MPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EE-TTT--EEEEE-E---E-SEEEEEE-TTSSEEEEEE--
T ss_pred eeCCCCCCceEEE-e---CCceeeeEEcCCCCEEEecCCC
Confidence 7888887654322 1 1234455667899987765554
No 372
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.85 E-value=6.8e-05 Score=39.91 Aligned_cols=36 Identities=19% Similarity=0.434 Sum_probs=32.0
Q ss_pred eEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEE
Q 019482 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFE 91 (340)
Q Consensus 56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 91 (340)
...+..|...|.++.|++++..+++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355667889999999999999999999999999996
No 373
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.83 E-value=0.0093 Score=47.04 Aligned_cols=189 Identities=13% Similarity=0.124 Sum_probs=110.4
Q ss_pred EEEcCCCCeEEEEecC-----CCEEEEEecCcee-eeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC----------
Q 019482 69 IAVNPSGDDFVCSTTN-----GGCKLFEVYGGAT-DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---------- 132 (340)
Q Consensus 69 ~~~~~~~~~l~~~~~d-----~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------- 132 (340)
=.|||||.+|...-.| |.|-|||.+..-. ..++. .|.-....+.|.+||+.++.+..
T Consensus 119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~-------t~GiGpHev~lm~DGrtlvvanGGIethpdfgR 191 (366)
T COG3490 119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFS-------THGIGPHEVTLMADGRTLVVANGGIETHPDFGR 191 (366)
T ss_pred cccCCCCcEEEeecCCCCCCCceEEEEecccccceecccc-------cCCcCcceeEEecCCcEEEEeCCceecccccCc
Confidence 4699999999876544 6899999874321 11111 24445678999999998887642
Q ss_pred --------CCcEEEEeCCCCceeeccc----cCccceeEEEecCCCCeEEEeeCCCe-----EEEEEccCCeeEEEeecC
Q 019482 133 --------DGHLRIMHWPSLRIILDEP----KAHKSVLDMDFSLDSEFLATTSTDGS-----ARIWKTEDGVAWTFLTRN 195 (340)
Q Consensus 133 --------dg~i~~~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d~~-----v~iwd~~~~~~~~~~~~~ 195 (340)
.-.+.+.|..+++.+.+.. .++-.|..++..+||..++.+-..|. -.+=-...++++.-+...
T Consensus 192 ~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~p 271 (366)
T COG3490 192 TELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLP 271 (366)
T ss_pred cccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCC
Confidence 1134444544555443322 22347888999988876665543221 112222334444333211
Q ss_pred C------CCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEE
Q 019482 196 S------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDIC 269 (340)
Q Consensus 196 ~------~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 269 (340)
. ...|-+++.+.+...+ .+++-..+...+||..++..+......+ ...+. +...-+++.+.+|.+.
T Consensus 272 ee~~~~~anYigsiA~n~~~glV----~lTSP~GN~~vi~da~tG~vv~~a~l~d--aaGva--~~~~gf~vssg~G~~~ 343 (366)
T COG3490 272 EEQTAAFANYIGSIAANRRDGLV----ALTSPRGNRAVIWDAATGAVVSEAALPD--AAGVA--AAKGGFAVSSGQGRII 343 (366)
T ss_pred HHHHHHHHhhhhheeecccCCeE----EEecCCCCeEEEEEcCCCcEEecccccc--cccce--eccCceEEecCCceEE
Confidence 1 2346677777655532 5666677889999999998764433221 22222 3334456666788888
Q ss_pred EEe
Q 019482 270 VVD 272 (340)
Q Consensus 270 i~d 272 (340)
++.
T Consensus 344 ~~s 346 (366)
T COG3490 344 FYS 346 (366)
T ss_pred ecc
Confidence 774
No 374
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.79 E-value=0.00011 Score=39.04 Aligned_cols=38 Identities=34% Similarity=0.458 Sum_probs=32.6
Q ss_pred cEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEe
Q 019482 235 NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD 272 (340)
Q Consensus 235 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 272 (340)
+++..+..+...+.++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34455667778899999999999999999999999996
No 375
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.00062 Score=57.85 Aligned_cols=149 Identities=17% Similarity=0.124 Sum_probs=99.3
Q ss_pred CCCCe-EEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE--EEEEecCCcceEEEEECCCCcE--Ee
Q 019482 164 LDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL--FCTVQRGDKALLAVYDISTWNK--IG 238 (340)
Q Consensus 164 ~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~--~~ 238 (340)
.+.++ +.++.....++--|++.|+.+..+..+.+ |.-+.+.|+.+..-+ -..+.|-.++.|.-||.|-... +.
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d--i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD--INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC--cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence 34444 44455556788899999999999986544 788888887653221 1134556788899999884322 22
Q ss_pred eeecc----CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEE
Q 019482 239 HKRLL----RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI 314 (340)
Q Consensus 239 ~~~~~----~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 314 (340)
....+ .....|.+-..+| +|++|+.+|.|++||- .+........+- +.+|..+..+.||++|+..+.. .+.+
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgL-G~~I~hVdvtadGKwil~Tc~t-yLlL 496 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGL-GDAIKHVDVTADGKWILATCKT-YLLL 496 (644)
T ss_pred eeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhccccc-CCceeeEEeeccCcEEEEeccc-EEEE
Confidence 22222 1234455544444 8999999999999997 555444444444 7899999999999988877654 4555
Q ss_pred EEec
Q 019482 315 TKLT 318 (340)
Q Consensus 315 w~~~ 318 (340)
-+..
T Consensus 497 i~t~ 500 (644)
T KOG2395|consen 497 IDTL 500 (644)
T ss_pred EEEe
Confidence 5554
No 376
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.76 E-value=0.018 Score=48.26 Aligned_cols=238 Identities=10% Similarity=0.077 Sum_probs=115.5
Q ss_pred CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC---CCeEEEccC-C-------
Q 019482 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGV-D------- 133 (340)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~-d------- 133 (340)
..++|+|.|+|+.++ +...|.|++++ ..+.....+................++++|+ ..+|..... .
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 468899999987665 46689999999 3333312221111112234567899999994 234433332 1
Q ss_pred -CcEEEEeCCCC-------ceee-cccc---CccceeEEEecCCCCeEEEeeCCC-------------eEEEEEccCCee
Q 019482 134 -GHLRIMHWPSL-------RIIL-DEPK---AHKSVLDMDFSLDSEFLATTSTDG-------------SARIWKTEDGVA 188 (340)
Q Consensus 134 -g~i~~~d~~~~-------~~~~-~~~~---~~~~i~~~~~~~~~~~l~~~~~d~-------------~v~iwd~~~~~~ 188 (340)
..|.-|.+..+ +.+. .... .......|.|.|||.+.++.+..+ .|.-.+.. ++.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~ 159 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSI 159 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcC
Confidence 13444444332 1111 1111 122456799999998766655332 22222321 110
Q ss_pred -------------EEEeecCCCCceeeEEEccC-CCcceEEEEEecCCc--ceEEEEECCCCc-----------------
Q 019482 189 -------------WTFLTRNSDEKIELCRFSKD-GTKPFLFCTVQRGDK--ALLAVYDISTWN----------------- 235 (340)
Q Consensus 189 -------------~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~d--~~i~i~d~~~~~----------------- 235 (340)
...+..... ....++|+|. |.. + ..-.+.+ ..|.+. ..+.
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l-~---~~d~G~~~~dein~i--~~G~nYGWP~~~~~~~~~~~~ 232 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRL-W---AADNGPDGWDEINRI--EPGGNYGWPYCEGGPKYSGPP 232 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEE-E---EEEE-SSSSEEEEEE---TT-B--TTTBSSSCSTTSS-
T ss_pred CCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcE-E---EEccCCCCCcEEEEe--ccCCcCCCCCCcCCCCCCCCc
Confidence 011111121 2557899998 542 2 1222222 233322 1111
Q ss_pred ------------EEeeeeccCCCeeEEEECC-------CCCEEEEeeCCCcEEEEeccCceEeecc-c-ccccccceeeE
Q 019482 236 ------------KIGHKRLLRKPASVLSISL-------DGKYLAMGSKDGDICVVDVKKMEINHWS-K-RLHLGTSIALV 294 (340)
Q Consensus 236 ------------~~~~~~~~~~~i~~~~~s~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~-~~~~~~~i~~~ 294 (340)
++..+. +...+..+.|-. +|.+++..-..+.|....+.....+... . .......+..+
T Consensus 233 ~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v 311 (331)
T PF07995_consen 233 IGDAPSCPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDV 311 (331)
T ss_dssp ECTGSS-TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEE
T ss_pred cccccCCCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEE
Confidence 111111 123455555543 4556666665678888888744322111 1 11213479999
Q ss_pred EEecCCeEEEEEecCCcEE
Q 019482 295 EFCPTQRVVLTASKEWGAM 313 (340)
Q Consensus 295 ~~~~~~~~l~~~~~dg~i~ 313 (340)
++.|||.++++.+.+|.|.
T Consensus 312 ~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 312 AQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEETTSEEEEEE-TTTTEE
T ss_pred EEcCCCeEEEEECCCCeEe
Confidence 9999999999988888764
No 377
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.75 E-value=0.0028 Score=42.54 Aligned_cols=100 Identities=13% Similarity=0.162 Sum_probs=66.0
Q ss_pred eeEEEEcC---CC-CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC
Q 019482 66 PMTIAVNP---SG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (340)
Q Consensus 66 v~~~~~~~---~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~ 141 (340)
|+++++.. +| +.|++|+.|..|++|+-+. ....+. ....|.++.-... ..++.+..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~--------e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAEIT--------ETDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEEEe--------cccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 56666654 33 4899999999999998543 222222 3367777777665 57889999999999985
Q ss_pred CCCceeeccccCccceeEEEecC---CC-CeEEEeeCCCeEE
Q 019482 142 PSLRIILDEPKAHKSVLDMDFSL---DS-EFLATTSTDGSAR 179 (340)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~~~~~~---~~-~~l~~~~~d~~v~ 179 (340)
.+.+.+....+ .+.++.+.. || ..|++|=.+|.|-
T Consensus 71 --~~RlWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 --SQRLWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred --cceeeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 34444454333 355555543 33 2588888888764
No 378
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.71 E-value=0.015 Score=45.92 Aligned_cols=185 Identities=14% Similarity=0.172 Sum_probs=113.6
Q ss_pred CCeEEEEEecCCCeEEEccCCC--cEEEEeCCCCceeeccccCcc-ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeE
Q 019482 113 GPQKCLSFSVDGSRFAAGGVDG--HLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW 189 (340)
Q Consensus 113 ~~v~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~ 189 (340)
.-...+.|..++.++-+.+.-| .|+.+|+.+++......-... --..++.. +++...-.=.++...+||..+-+.+
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEE
Confidence 3446788877887777776655 699999999986654332221 12234444 2334444457899999999999998
Q ss_pred EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC-----CCeeEEEECCCCCEEEEeeC
Q 019482 190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGSK 264 (340)
Q Consensus 190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~ 264 (340)
.++.-..+ =+.++ .+++. ++.+.....|.++|..+.+....+.... ..++.+.+- +|...|=.=.
T Consensus 124 ~~~~y~~E--GWGLt--~dg~~-----Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~ 193 (264)
T PF05096_consen 124 GTFPYPGE--GWGLT--SDGKR-----LIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQ 193 (264)
T ss_dssp EEEE-SSS----EEE--ECSSC-----EEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETT
T ss_pred EEEecCCc--ceEEE--cCCCE-----EEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCC
Confidence 88875433 45565 56665 5666667889999999887766554332 245667774 5666665556
Q ss_pred CCcEEEEeccCceEeeccccc---------c----cccceeeEEEecCCeEEEEEec
Q 019482 265 DGDICVVDVKKMEINHWSKRL---------H----LGTSIALVEFCPTQRVVLTASK 308 (340)
Q Consensus 265 dg~i~i~d~~~~~~~~~~~~~---------~----~~~~i~~~~~~~~~~~l~~~~~ 308 (340)
...|...|..+|++...+... . ...-.+.+|+.|..+.|...|+
T Consensus 194 td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 194 TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 677888899888877544210 0 0246899999987755555544
No 379
>PRK10115 protease 2; Provisional
Probab=97.69 E-value=0.044 Score=50.77 Aligned_cols=199 Identities=6% Similarity=-0.050 Sum_probs=107.8
Q ss_pred CeEEEEEecCCCeEEEccC-----CCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCC------CeEEEEE
Q 019482 114 PQKCLSFSVDGSRFAAGGV-----DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD------GSARIWK 182 (340)
Q Consensus 114 ~v~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~v~iwd 182 (340)
.+..+.|+||+++|+.+.. ...|++.|+.+++.+........ ..++|.+|++.|+....+ ..|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4667889999998876532 23588999988764332222222 459999998876665432 3677888
Q ss_pred ccCC--eeEEEeecCCCCcee-eEEEccCCCcceEEEEEecCCcceEEEEECC--CCcEEeeeeccCCCeeEEEECCCCC
Q 019482 183 TEDG--VAWTFLTRNSDEKIE-LCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TWNKIGHKRLLRKPASVLSISLDGK 257 (340)
Q Consensus 183 ~~~~--~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~i~~~~~s~~~~ 257 (340)
+.++ +....+.. ...... ....+.++++++ .-.....++.+.+++.. .+.....+.........+. +..+.
T Consensus 206 lgt~~~~d~lv~~e-~~~~~~~~~~~s~d~~~l~--i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 281 (686)
T PRK10115 206 IGTPASQDELVYEE-KDDTFYVSLHKTTSKHYVV--IHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHR 281 (686)
T ss_pred CCCChhHCeEEEee-CCCCEEEEEEEcCCCCEEE--EEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCE
Confidence 8777 32333332 222233 333344777543 34555567789999953 3332222222222222222 22333
Q ss_pred EEEEeeC---CCcEEEEeccC-ceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482 258 YLAMGSK---DGDICVVDVKK-MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 258 ~l~~~~~---dg~i~i~d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
+++.... ...|...++.. ++. ..+........+..+.+. .+.++++...+|.-+++-++..
T Consensus 282 ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~ 346 (686)
T PRK10115 282 FYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRK 346 (686)
T ss_pred EEEEEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCC
Confidence 3333322 22344445442 221 122122113468888887 4467777778888888877653
No 380
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.67 E-value=0.035 Score=51.61 Aligned_cols=206 Identities=13% Similarity=0.073 Sum_probs=119.9
Q ss_pred CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCC-CCCCeEEEEEec----------------CCCeEEEccCCCcEE
Q 019482 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSV----------------DGSRFAAGGVDGHLR 137 (340)
Q Consensus 75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~----------------~~~~l~~~~~dg~i~ 137 (340)
+..++.++.++.|.-.|..+++...++......... .....+.+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 557777787888999999888877776443211100 001123333321 234788888899999
Q ss_pred EEeCCCCceeeccccCccce-------------eEEEecC--CCCeEEEeeC----------CCeEEEEEccCCeeEEEe
Q 019482 138 IMHWPSLRIILDEPKAHKSV-------------LDMDFSL--DSEFLATTST----------DGSARIWKTEDGVAWTFL 192 (340)
Q Consensus 138 ~~d~~~~~~~~~~~~~~~~i-------------~~~~~~~--~~~~l~~~~~----------d~~v~iwd~~~~~~~~~~ 192 (340)
-.|.++|+.+..+.. ...+ ..+.-.| .+..+++|+. +|.|+-+|.++|+.+-.+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998865532 1111 1112222 2345666642 688999999999988776
Q ss_pred ecCCC--------C--------ce-eeEEEccCCCcceEEEE-------------EecCCcceEEEEECCCCcEEeeeec
Q 019482 193 TRNSD--------E--------KI-ELCRFSKDGTKPFLFCT-------------VQRGDKALLAVYDISTWNKIGHKRL 242 (340)
Q Consensus 193 ~~~~~--------~--------~v-~~~~~~~~~~~~~~~~~-------------~~~~~d~~i~i~d~~~~~~~~~~~~ 242 (340)
..... + .+ ...+++++...+|+-.. ......+.|.-.|.++++..-.++.
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 52110 0 00 12334444333221100 0011246788889999988766554
Q ss_pred cCCCee---------EEEECC-CCC---EEEEeeCCCcEEEEeccCceEeec
Q 019482 243 LRKPAS---------VLSISL-DGK---YLAMGSKDGDICVVDVKKMEINHW 281 (340)
Q Consensus 243 ~~~~i~---------~~~~s~-~~~---~l~~~~~dg~i~i~d~~~~~~~~~ 281 (340)
..+.+. -+.+.. +|+ .++.++.+|.++++|.++++.+..
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 222111 122322 553 788999999999999999887654
No 381
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.66 E-value=0.03 Score=47.89 Aligned_cols=95 Identities=17% Similarity=0.199 Sum_probs=58.5
Q ss_pred EEEEcCCCCeEEEEecCCCEEE---EEecCce-eeeeeccccCCCCCCC--CCeEEEEEec-----------CCCeEEEc
Q 019482 68 TIAVNPSGDDFVCSTTNGGCKL---FEVYGGA-TDINLLAKKMPPLQDA--GPQKCLSFSV-----------DGSRFAAG 130 (340)
Q Consensus 68 ~~~~~~~~~~l~~~~~d~~i~i---w~~~~~~-~~~~~~~~~~~~~~~~--~~v~~~~~~~-----------~~~~l~~~ 130 (340)
.++.+|+++.||.+..+..+.+ |+..... ....+...-...+.+. ..|+++.|-| |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678899999999988775554 5332111 1111110001111222 4666666543 35689999
Q ss_pred cCCCcEEEEeCCCCceeeccccCccceeEEEec
Q 019482 131 GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (340)
Q Consensus 131 ~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~ 163 (340)
..+|.|++|. ++|..+....-|.++|..+.+.
T Consensus 86 ~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEe-ccchHHHHHhcCccceEEEEec
Confidence 9999999998 4677666666677788877764
No 382
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.64 E-value=0.0076 Score=40.54 Aligned_cols=100 Identities=18% Similarity=0.173 Sum_probs=65.0
Q ss_pred eeEEEecC---CC-CeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC
Q 019482 157 VLDMDFSL---DS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (340)
Q Consensus 157 i~~~~~~~---~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~ 232 (340)
|+++++.. || +.|++|+.|..|++|+- .+.+.++.. .+.+.++.-...++ ++.+-.+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e--~~~v~~L~~~~~~~------F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE--TDKVTSLCSLGGGR------FAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec--ccceEEEEEcCCCE------EEEEecCCEEEEEeCc
Confidence 55666554 33 47999999999999984 466666653 34688887777765 5777788899888763
Q ss_pred CCcEEeeeeccCCCeeEEEECC-C--C-CEEEEeeCCCcEE
Q 019482 233 TWNKIGHKRLLRKPASVLSISL-D--G-KYLAMGSKDGDIC 269 (340)
Q Consensus 233 ~~~~~~~~~~~~~~i~~~~~s~-~--~-~~l~~~~~dg~i~ 269 (340)
. .+-..+. +..+.++.+.. + | ..|++|-.+|.|-
T Consensus 72 ~--RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 72 Q--RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred c--eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2 2222222 23355555433 3 3 4788888888764
No 383
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.61 E-value=0.013 Score=46.45 Aligned_cols=162 Identities=10% Similarity=0.049 Sum_probs=106.0
Q ss_pred ccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEE
Q 019482 151 PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD 230 (340)
Q Consensus 151 ~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d 230 (340)
.+.+..+.++.|+|+.+.|++......-.++=..+|+.+.++....-.....+.+..++.+ .++.-.++.+.++.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~f-----vi~dER~~~l~~~~ 156 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQF-----VIVDERDRALYLFT 156 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEE-----EEEehhcceEEEEE
Confidence 3445579999999999988888777777777777899988887544445677888888876 56667788888887
Q ss_pred CCCCcEEeee----------eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeec--cccccc------cccee
Q 019482 231 ISTWNKIGHK----------RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW--SKRLHL------GTSIA 292 (340)
Q Consensus 231 ~~~~~~~~~~----------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~------~~~i~ 292 (340)
+.....+... ...+...-.++|+|..+.|+.+-+-.=+.||.......... ....+. -..+.
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS 236 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS 236 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence 7655322111 11134567899999998888888877788887654321100 000010 13578
Q ss_pred eEEEecCC-eEEEEEecCCcEEEEEe
Q 019482 293 LVEFCPTQ-RVVLTASKEWGAMITKL 317 (340)
Q Consensus 293 ~~~~~~~~-~~l~~~~~dg~i~iw~~ 317 (340)
++.|++.. .+|+-+.+++.+.-.+.
T Consensus 237 gl~~~~~~~~LLVLS~ESr~l~Evd~ 262 (316)
T COG3204 237 GLEFNAITNSLLVLSDESRRLLEVDL 262 (316)
T ss_pred cceecCCCCcEEEEecCCceEEEEec
Confidence 88888744 45555555555544444
No 384
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.61 E-value=0.036 Score=49.59 Aligned_cols=200 Identities=10% Similarity=0.053 Sum_probs=115.9
Q ss_pred CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCC---C-CeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeecc
Q 019482 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA---G-PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE 150 (340)
Q Consensus 75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~---~-~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 150 (340)
+..++.++.++.|.-+|..+++...+............ . .-..+++. +..++.++.|+.+.-+|.++++.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 45677777778899999988887766543211000000 0 00112232 346777788999999999999988765
Q ss_pred ccCcc-ceeEEEecC--CCCeEEEee------CCCeEEEEEccCCeeEEEeecCCCC-----------------------
Q 019482 151 PKAHK-SVLDMDFSL--DSEFLATTS------TDGSARIWKTEDGVAWTFLTRNSDE----------------------- 198 (340)
Q Consensus 151 ~~~~~-~i~~~~~~~--~~~~l~~~~------~d~~v~iwd~~~~~~~~~~~~~~~~----------------------- 198 (340)
..... .-..+.-+| .+..++.+. .+|.|.-+|.++|+.+-.+......
T Consensus 147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~ 226 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD 226 (527)
T ss_pred ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence 43211 001111222 123444443 2689999999999887665422110
Q ss_pred -------cee-eEEEccCCCcceEEEEEecC----------C----cceEEEEECCCCcEEeeeeccCCCee--------
Q 019482 199 -------KIE-LCRFSKDGTKPFLFCTVQRG----------D----KALLAVYDISTWNKIGHKRLLRKPAS-------- 248 (340)
Q Consensus 199 -------~v~-~~~~~~~~~~~~~~~~~~~~----------~----d~~i~i~d~~~~~~~~~~~~~~~~i~-------- 248 (340)
.+. .+.+.|....+| +-++. . ...|.-.|+++++..-.++...+.+.
T Consensus 227 ~~~~gg~~~W~~~s~D~~~~lvy---~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 227 AWKTGGGATWGTGSYDPETNLIY---FGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred ccccCCCCccCceeEcCCCCeEE---EeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 011 234455444322 22211 1 12788889999998766654332221
Q ss_pred -EEEECCCCC---EEEEeeCCCcEEEEeccCceEe
Q 019482 249 -VLSISLDGK---YLAMGSKDGDICVVDVKKMEIN 279 (340)
Q Consensus 249 -~~~~s~~~~---~l~~~~~dg~i~i~d~~~~~~~ 279 (340)
-+.+..+|+ .++.+..+|.+++.|..+++.+
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 123334665 7889999999999999999875
No 385
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.0028 Score=58.63 Aligned_cols=102 Identities=25% Similarity=0.318 Sum_probs=74.3
Q ss_pred CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccC
Q 019482 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153 (340)
Q Consensus 74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 153 (340)
.+..++.|+..|.+...|+...-.. +.. .....++|.+++|+.+|..++.|-.+|.|.+||+..++..+.+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~--~~~----ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~ 171 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGP--LHQ----NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH 171 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccch--hhc----CCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec
Confidence 4557888888898988887654211 111 1124689999999999999999999999999999998877666555
Q ss_pred cc---ceeEEEecCCCCeEEEeeCCCeEEEEEc
Q 019482 154 HK---SVLDMDFSLDSEFLATTSTDGSARIWKT 183 (340)
Q Consensus 154 ~~---~i~~~~~~~~~~~l~~~~~d~~v~iwd~ 183 (340)
.. .+..+.+..++..++++...|. +|.+
T Consensus 172 ~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 172 GAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 44 3445555556667888877776 5554
No 386
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.60 E-value=0.012 Score=51.29 Aligned_cols=154 Identities=11% Similarity=0.114 Sum_probs=89.7
Q ss_pred CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC----CCeEEEccCCCcEEEE
Q 019482 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD----GSRFAAGGVDGHLRIM 139 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~~~ 139 (340)
.++..++|. ||+.++-.. +++-+ ++. ++ .....+..-..|..+.|.|- -.-+++.-....|.+|
T Consensus 20 HPvhGlaWT-DGkqVvLT~----L~l~~---gE~--kf--Gds~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVW 87 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTD----LQLHN---GEP--KF--GDSKVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVW 87 (671)
T ss_pred ccccceEec-CCCEEEEEe----eeeeC---Ccc--cc--CCccEeeccceeeeeeecCcccCCCCceEEEeccceEEEE
Confidence 478899997 777655332 22221 110 00 00111223367899999994 2245555667889999
Q ss_pred eCCC-----CceeeccccC-cc----ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCC
Q 019482 140 HWPS-----LRIILDEPKA-HK----SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209 (340)
Q Consensus 140 d~~~-----~~~~~~~~~~-~~----~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (340)
.+.. ++........ .+ --..+.|+|....|+.-.....-.+++++.............+.|.|.+|.+||
T Consensus 88 qL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 88 QLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDG 167 (671)
T ss_pred EeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcC
Confidence 8852 2211111111 01 135678999988887766655556667665443333333456789999999999
Q ss_pred CcceEEEEEecCCcceEEEEECCC
Q 019482 210 TKPFLFCTVQRGDKALLAVYDIST 233 (340)
Q Consensus 210 ~~~~~~~~~~~~~d~~i~i~d~~~ 233 (340)
+++ +++.+..-.-++||-..
T Consensus 168 ~RL----VVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 168 QRL----VVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CEE----EEEeCCeEEEEEecCch
Confidence 985 33444455677888653
No 387
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.0021 Score=54.84 Aligned_cols=144 Identities=15% Similarity=0.126 Sum_probs=98.9
Q ss_pred CCCeE-EEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCe--E-----EEeeCCCeEEEEEccCCee-EEEee
Q 019482 123 DGSRF-AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEF--L-----ATTSTDGSARIWKTEDGVA-WTFLT 193 (340)
Q Consensus 123 ~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l-----~~~~~d~~v~iwd~~~~~~-~~~~~ 193 (340)
+.++| ..+.....++-.|++.|+.+....-+.. |.-+.+.|+.+. | +.|-.|..|.-||.+-... +....
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 44444 3445556688889999998877765544 777788886532 2 3455688899999874322 11111
Q ss_pred c----CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEE
Q 019482 194 R----NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDIC 269 (340)
Q Consensus 194 ~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 269 (340)
. .......|.+-..+|. ++.++.+|.|++||--..+....+++.+.+|..+..+.+|++|+..+ +..+.
T Consensus 423 q~kqy~~k~nFsc~aTT~sG~------IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLl 495 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESGY------IVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLL 495 (644)
T ss_pred eccccccccccceeeecCCce------EEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEE
Confidence 1 1123466777777776 79999999999999844444556788889999999999999988775 45676
Q ss_pred EEecc
Q 019482 270 VVDVK 274 (340)
Q Consensus 270 i~d~~ 274 (340)
+.++.
T Consensus 496 Li~t~ 500 (644)
T KOG2395|consen 496 LIDTL 500 (644)
T ss_pred EEEEe
Confidence 66653
No 388
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.45 E-value=0.077 Score=47.55 Aligned_cols=237 Identities=9% Similarity=0.036 Sum_probs=132.8
Q ss_pred CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEE-EEEecCCCeEEEcc------CCCcEEEEeCCCCcee
Q 019482 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC-LSFSVDGSRFAAGG------VDGHLRIMHWPSLRII 147 (340)
Q Consensus 75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~ 147 (340)
+..++.++.++.+.-.|..+++...+....... ....+.+ .... ++ .++++. .+|.|.-+|.++|+.+
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~---~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYK---AGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLV 194 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeccccccc---ccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCcee
Confidence 346777888899999999999877665332110 0001111 1111 34 444443 2688999999998876
Q ss_pred eccccCcc-------------------------------ce-eEEEecCCCCeEEEeeC-----CC-----------eEE
Q 019482 148 LDEPKAHK-------------------------------SV-LDMDFSLDSEFLATTST-----DG-----------SAR 179 (340)
Q Consensus 148 ~~~~~~~~-------------------------------~i-~~~~~~~~~~~l~~~~~-----d~-----------~v~ 179 (340)
.++..... .+ ..+.+.|...++..+.. ++ +|.
T Consensus 195 W~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~v 274 (527)
T TIGR03075 195 WRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIV 274 (527)
T ss_pred EeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEE
Confidence 55332110 11 13466665555555441 11 677
Q ss_pred EEEccCCeeEEEeecCCC--------CceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec---------
Q 019482 180 IWKTEDGVAWTFLTRNSD--------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL--------- 242 (340)
Q Consensus 180 iwd~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--------- 242 (340)
-.|+++|+..-.++..+. ....-+....+|+.. -.++.+..+|.+.+.|.++++.+...+.
T Consensus 275 Ald~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~--~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~ 352 (527)
T TIGR03075 275 ARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPR--KLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATG 352 (527)
T ss_pred EEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEE--EEEEEeCCCceEEEEECCCCceeccccccCCcccccc
Confidence 778889988776654221 111223333455521 1267889999999999999987521100
Q ss_pred ---cC-CC----------------------------eeEEEECCCCCEEEEeeCC-------------------------
Q 019482 243 ---LR-KP----------------------------ASVLSISLDGKYLAMGSKD------------------------- 265 (340)
Q Consensus 243 ---~~-~~----------------------------i~~~~~s~~~~~l~~~~~d------------------------- 265 (340)
.. .+ -..++++|+..++++...+
T Consensus 353 ~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 432 (527)
T TIGR03075 353 VDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTI 432 (527)
T ss_pred cCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceecccccc
Confidence 00 00 0125666766655543322
Q ss_pred --------CcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 266 --------GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 266 --------g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
|.|.-+|+.+++..-...... +...-...-.+.+++.++.||.++.+|.+..+
T Consensus 433 ~p~~~~~~g~l~AiD~~tGk~~W~~~~~~---p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe 493 (527)
T TIGR03075 433 KPPPDDHMGSLIAWDPITGKIVWEHKEDF---PLWGGVLATAGDLVFYGTLEGYFKAFDAKTGE 493 (527)
T ss_pred CCCCCCCceeEEEEeCCCCceeeEecCCC---CCCCcceEECCcEEEEECCCCeEEEEECCCCC
Confidence 457777888887665443211 11111122245577778889999988887665
No 389
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.37 E-value=0.051 Score=43.62 Aligned_cols=148 Identities=18% Similarity=0.132 Sum_probs=89.9
Q ss_pred CeEEEEEecCCCeEEEcc---CCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEE-ccCCeeE
Q 019482 114 PQKCLSFSVDGSRFAAGG---VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK-TEDGVAW 189 (340)
Q Consensus 114 ~v~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd-~~~~~~~ 189 (340)
.+...+++++++.++... ....++++... ....... ....+..-.|++++...+....+...+++. ..+++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 678899999999777665 23345555433 3222222 223677889999987777666666666664 2333222
Q ss_pred -EEeecCCC-CceeeEEEccCCCcceEEEEEecCCcceEEEEECC---CC------cEEeeeeccCCCeeEEEECCCCCE
Q 019482 190 -TFLTRNSD-EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS---TW------NKIGHKRLLRKPASVLSISLDGKY 258 (340)
Q Consensus 190 -~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~---~~------~~~~~~~~~~~~i~~~~~s~~~~~ 258 (340)
..+..... ..|..+++||||..+.+ +.....++.|.+--+. .+ .+..........+..+.|.+++.+
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~--v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAV--VVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEE--EEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 22221111 27999999999998543 4445556777766543 22 111112223457899999999988
Q ss_pred EEEeeCCC
Q 019482 259 LAMGSKDG 266 (340)
Q Consensus 259 l~~~~~dg 266 (340)
++.+...+
T Consensus 180 ~V~~~~~~ 187 (253)
T PF10647_consen 180 VVLGRSAG 187 (253)
T ss_pred EEEeCCCC
Confidence 87776544
No 390
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.35 E-value=0.05 Score=43.63 Aligned_cols=147 Identities=16% Similarity=0.070 Sum_probs=86.4
Q ss_pred ceeEEEecCCCCeEEEee---CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEE-EC
Q 019482 156 SVLDMDFSLDSEFLATTS---TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY-DI 231 (340)
Q Consensus 156 ~i~~~~~~~~~~~l~~~~---~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~-d~ 231 (340)
.+.+.+++++++.++... ....++++. .+....... ....+....|++++.. ......+...+++ +.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~--~g~~l~~PS~d~~g~~-----W~v~~~~~~~~~~~~~ 95 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL--TGGSLTRPSWDPDGWV-----WTVDDGSGGVRVVRDS 95 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec--cCCccccccccCCCCE-----EEEEcCCCceEEEEec
Confidence 688999999999877655 233455554 343333332 2236888999999764 2333344444444 33
Q ss_pred CCCcEE-eeeecc--CCCeeEEEECCCCCEEEEee---CCCcEEEEecc---Cc--eEe-eccccc-ccccceeeEEEec
Q 019482 232 STWNKI-GHKRLL--RKPASVLSISLDGKYLAMGS---KDGDICVVDVK---KM--EIN-HWSKRL-HLGTSIALVEFCP 298 (340)
Q Consensus 232 ~~~~~~-~~~~~~--~~~i~~~~~s~~~~~l~~~~---~dg~i~i~d~~---~~--~~~-~~~~~~-~~~~~i~~~~~~~ 298 (340)
..++.. ...... ...|..+.+||||..++... .++.|.+--+. .+ ..+ ...... .....+.+++|.+
T Consensus 96 ~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 96 ASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred CCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 333321 112222 12899999999999888765 34677776543 22 111 001111 1135789999999
Q ss_pred CCeEEEEEecCCc
Q 019482 299 TQRVVLTASKEWG 311 (340)
Q Consensus 299 ~~~~l~~~~~dg~ 311 (340)
++.+++.+...+.
T Consensus 176 ~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 176 DSTLVVLGRSAGG 188 (253)
T ss_pred CCEEEEEeCCCCC
Confidence 9988777666544
No 391
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.26 E-value=0.00097 Score=37.32 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=30.0
Q ss_pred CCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCce
Q 019482 112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI 146 (340)
Q Consensus 112 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 146 (340)
...|.+++|+|...+||.++.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 467999999999999999999999999998 4544
No 392
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.0018 Score=59.72 Aligned_cols=101 Identities=9% Similarity=0.080 Sum_probs=75.2
Q ss_pred CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC
Q 019482 165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244 (340)
Q Consensus 165 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 244 (340)
.+..++.|+..|.+...|....-.......+..++|++++|+.+|.. +..|-.+|.|.+||+..++.++.+..+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~-----l~~G~~~G~V~v~D~~~~k~l~~i~e~~ 172 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSL-----LLAGLGDGHVTVWDMHRAKILKVITEHG 172 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCce-----eccccCCCcEEEEEccCCcceeeeeecC
Confidence 45678889888999998886532211222344578999999999997 7888889999999999999988888877
Q ss_pred CCeeEE---EECCCCCEEEEeeCCCcEEEEe
Q 019482 245 KPASVL---SISLDGKYLAMGSKDGDICVVD 272 (340)
Q Consensus 245 ~~i~~~---~~s~~~~~l~~~~~dg~i~i~d 272 (340)
.+.+.+ .+..++..++++...|. +|.
T Consensus 173 ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 173 APVTGVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred CccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 665554 44456667888777775 454
No 393
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.12 E-value=0.18 Score=45.63 Aligned_cols=235 Identities=19% Similarity=0.192 Sum_probs=113.1
Q ss_pred ccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC-C-----CEEEEEe
Q 019482 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-G-----GCKLFEV 92 (340)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-~-----~i~iw~~ 92 (340)
..+++.||.......-..++.|+.... .... ...+. +...-.+++.. ++...++|+.| | .+..||.
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~--~w~~----~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~ 356 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTN--EWSS----LAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDP 356 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcC--cEee----cCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecC
Confidence 567888887653334455666654432 1111 00111 12223344444 45777888888 3 5667777
Q ss_pred cCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCc-----EEEEeCCCCceeeccccCccceeEEEe-cCCC
Q 019482 93 YGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH-----LRIMHWPSLRIILDEPKAHKSVLDMDF-SLDS 166 (340)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~~~d~~~~~~~~~~~~~~~~i~~~~~-~~~~ 166 (340)
..++... . . +......-..++ .-+|...++|+.||. +..||..+.+....-.-.. ....... .-+|
T Consensus 357 ~~~~W~~-~-a----~M~~~R~~~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g 428 (571)
T KOG4441|consen 357 RTNQWTP-V-A----PMNTKRSDFGVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGG 428 (571)
T ss_pred CCCceec-c-C----CccCccccceeE-EECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECC
Confidence 7666322 1 1 111111111111 226778888888864 7778877654322111111 2222222 2258
Q ss_pred CeEEEeeCCC------eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc-----eEEEEECCCCc
Q 019482 167 EFLATTSTDG------SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA-----LLAVYDISTWN 235 (340)
Q Consensus 167 ~~l~~~~~d~------~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~-----~i~i~d~~~~~ 235 (340)
...++|+.++ ++..||..+++-...-.......-..++.- ++.. .+.+|.|+ ++..||..+.+
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~-~~~i-----YvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL-NGKI-----YVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE-CCEE-----EEECCccCCCccceEEEEcCCCCc
Confidence 8888888554 577888776543221111111111122222 2322 34555443 37778887654
Q ss_pred E--EeeeeccCCCeeEEEECCCCCEEEEeeCCC-----cEEEEeccCce
Q 019482 236 K--IGHKRLLRKPASVLSISLDGKYLAMGSKDG-----DICVVDVKKME 277 (340)
Q Consensus 236 ~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~ 277 (340)
- +.........+.... -+++..++|+.|| +|..||..+.+
T Consensus 503 W~~v~~m~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 503 WTMVAPMTSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred eeEcccCccccccccEEE--ECCEEEEEecccCccccceeEEcCCCCCc
Confidence 3 222222222222222 2567777787765 35566655544
No 394
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.11 E-value=0.17 Score=45.89 Aligned_cols=226 Identities=15% Similarity=0.098 Sum_probs=114.8
Q ss_pred CCCeEEEEecC------CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC------CcEEEEeC
Q 019482 74 SGDDFVCSTTN------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------GHLRIMHW 141 (340)
Q Consensus 74 ~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~~d~ 141 (340)
.+..++.|+.+ ..+..||..++...... .......-.+++.. ++...++|+.| ..+..||.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a------~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~ 356 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLA------PMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDP 356 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecC------CCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecC
Confidence 45566777766 36778888776432111 11122233444444 45677888888 35778888
Q ss_pred CCCceeeccccCccceeEEEe-cCCCCeEEEeeCCC-----eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEE
Q 019482 142 PSLRIILDEPKAHKSVLDMDF-SLDSEFLATTSTDG-----SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (340)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~d~-----~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (340)
.+.+-.. ...-...=..+.. .-+|...++|+.|| ++-.||.++.+--..-. ............-+..+
T Consensus 357 ~~~~W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~--m~~~r~~~gv~~~~g~i--- 430 (571)
T KOG4441|consen 357 RTNQWTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP--MLTRRSGHGVAVLGGKL--- 430 (571)
T ss_pred CCCceec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC--CCcceeeeEEEEECCEE---
Confidence 7766332 1111111111111 22588889999886 46777776543211111 11122222222222222
Q ss_pred EEEecCCc------ceEEEEECCCCc--EEeeeeccCCCeeEEEECCCCCEEEEeeCCCc-----EEEEeccCceEeecc
Q 019482 216 CTVQRGDK------ALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSKDGD-----ICVVDVKKMEINHWS 282 (340)
Q Consensus 216 ~~~~~~~d------~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~ 282 (340)
.+.+|.+ .++..||..+.+ .+..+.......... .-++...+.|+.|+. |..||..+.+....-
T Consensus 431 -Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a--~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 431 -YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA--VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred -EEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEE--EECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 2333322 567889987654 332232222222222 236778888887763 777888887655442
Q ss_pred cccccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482 283 KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL 317 (340)
Q Consensus 283 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~ 317 (340)
.... ...-..++ .-++...+.|+.||.-++=.+
T Consensus 508 ~m~~-~rs~~g~~-~~~~~ly~vGG~~~~~~l~~v 540 (571)
T KOG4441|consen 508 PMTS-PRSAVGVV-VLGGKLYAVGGFDGNNNLNTV 540 (571)
T ss_pred cCcc-ccccccEE-EECCEEEEEecccCcccccee
Confidence 2111 11112222 235788888988875444433
No 395
>PRK10115 protease 2; Provisional
Probab=97.10 E-value=0.24 Score=46.09 Aligned_cols=195 Identities=10% Similarity=0.036 Sum_probs=99.6
Q ss_pred eeEEEEcCCCCeEEEEecC-----CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC------C
Q 019482 66 PMTIAVNPSGDDFVCSTTN-----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------G 134 (340)
Q Consensus 66 v~~~~~~~~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g 134 (340)
+..+.++|||++|+.+... ..|++.|+.++....... .. .-..++|.+|++.|+....+ .
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-------~~--~~~~~~w~~D~~~~~y~~~~~~~~~~~ 199 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-------DN--VEPSFVWANDSWTFYYVRKHPVTLLPY 199 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-------cC--cceEEEEeeCCCEEEEEEecCCCCCCC
Confidence 6678899999988865433 267788887664221111 11 11469999999866655432 3
Q ss_pred cEEEEeCCCC--ceeeccccCcccee-EEEecCCCCeEEEee---CCCeEEEEEcc--CCeeEEEeecCCCCceeeEEEc
Q 019482 135 HLRIMHWPSL--RIILDEPKAHKSVL-DMDFSLDSEFLATTS---TDGSARIWKTE--DGVAWTFLTRNSDEKIELCRFS 206 (340)
Q Consensus 135 ~i~~~d~~~~--~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~---~d~~v~iwd~~--~~~~~~~~~~~~~~~v~~~~~~ 206 (340)
.|+.+++.++ +....+........ .+..+.++++++..+ .++.+.+++.. .++....+.... +....+.
T Consensus 200 ~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~-- 276 (686)
T PRK10115 200 QVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRK-DHEYSLD-- 276 (686)
T ss_pred EEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCC-CCEEEEE--
Confidence 6888888877 32222332222233 233344777765443 34578888843 333222232222 2222222
Q ss_pred cCCCcceEEEEEec--CCcceEEEEECCCCcEEeeeecc--CCCeeEEEECCCCCEEEEeeCCCcEEE--EeccCc
Q 019482 207 KDGTKPFLFCTVQR--GDKALLAVYDISTWNKIGHKRLL--RKPASVLSISLDGKYLAMGSKDGDICV--VDVKKM 276 (340)
Q Consensus 207 ~~~~~~~~~~~~~~--~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~i--~d~~~~ 276 (340)
..+..++ +.+. .....|...++........+..+ ...+..+.+. .+.++++...+|.-++ ++..++
T Consensus 277 ~~~~~ly---~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~ 348 (686)
T PRK10115 277 HYQHRFY---LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR 348 (686)
T ss_pred eCCCEEE---EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC
Confidence 2223322 2332 23344555555521111223333 2367777776 3345555666665444 454433
No 396
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.09 E-value=0.0021 Score=48.75 Aligned_cols=105 Identities=16% Similarity=0.210 Sum_probs=65.1
Q ss_pred CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEE-EEEecCCCeEEEccCCCcEEEEeCCCCceeeccccC
Q 019482 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC-LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153 (340)
Q Consensus 75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 153 (340)
+..+++|+.+|.|.+|+............. ....|.+ +.-..++.+..++..||.|+.|++.-.+.+...-.|
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s------~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h 143 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCS------GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQH 143 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhc------ccccceeccccccccceeEEeccCCceeeeccccCceeeeeccc
Confidence 457889999999999988632211111110 1122322 222335668889999999999999887776655455
Q ss_pred c-cceeEEEecCCCCeEEEe--eCCCeEEEEEccC
Q 019482 154 H-KSVLDMDFSLDSEFLATT--STDGSARIWKTED 185 (340)
Q Consensus 154 ~-~~i~~~~~~~~~~~l~~~--~~d~~v~iwd~~~ 185 (340)
. .++.....+..++.++.+ |.|..++.|++..
T Consensus 144 ~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 144 NFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 4 345555555555566665 6666777777653
No 397
>PHA02713 hypothetical protein; Provisional
Probab=97.09 E-value=0.17 Score=45.83 Aligned_cols=181 Identities=10% Similarity=0.031 Sum_probs=86.5
Q ss_pred CCCeEEEccCC------CcEEEEeCCCCceee--ccccCccceeEEEecCCCCeEEEeeCCC-----eEEEEEccCCeeE
Q 019482 123 DGSRFAAGGVD------GHLRIMHWPSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTSTDG-----SARIWKTEDGVAW 189 (340)
Q Consensus 123 ~~~~l~~~~~d------g~i~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~~~~ 189 (340)
++...+.|+.+ ..+..||..+..... .......... ++ .-+++..+.|+.++ ++..||..+.+=.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~-~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFS-LA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhcee-EE-EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 56677777753 347788887664321 1111111222 22 23577778887654 4888998765321
Q ss_pred EEeecCCC--CceeeEEEccCCCcceEEEEEecCCc-----------------------ceEEEEECCCCc--EEeeeec
Q 019482 190 TFLTRNSD--EKIELCRFSKDGTKPFLFCTVQRGDK-----------------------ALLAVYDISTWN--KIGHKRL 242 (340)
Q Consensus 190 ~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~d-----------------------~~i~i~d~~~~~--~~~~~~~ 242 (340)
.+..-.. .....+. -++.. .+.|+.+ ..+..||..+.+ .+..+..
T Consensus 381 -~~~~mp~~r~~~~~~~--~~g~I-----YviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~ 452 (557)
T PHA02713 381 -MLPDMPIALSSYGMCV--LDQYI-----YIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT 452 (557)
T ss_pred -ECCCCCcccccccEEE--ECCEE-----EEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc
Confidence 1111110 0111111 23432 2333322 357788877643 2222222
Q ss_pred cCCCeeEEEECCCCCEEEEeeCC------CcEEEEeccC-ceEeecccccccccceeeEEEecCCeEEEEEecCC--cEE
Q 019482 243 LRKPASVLSISLDGKYLAMGSKD------GDICVVDVKK-MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW--GAM 313 (340)
Q Consensus 243 ~~~~i~~~~~s~~~~~l~~~~~d------g~i~i~d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~ 313 (340)
...... + ..-+++..+.|+.+ ..+..||..+ .+-........ .....+++. -+|+..++||.|+ .+-
T Consensus 453 ~r~~~~-~-~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~-~r~~~~~~~-~~~~iyv~Gg~~~~~~~e 528 (557)
T PHA02713 453 GTIRPG-V-VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES-RLSALHTIL-HDNTIMMLHCYESYMLQD 528 (557)
T ss_pred ccccCc-E-EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc-ccccceeEE-ECCEEEEEeeecceeehh
Confidence 111111 2 22356666777654 2467899887 44332211111 111222222 3788999999888 454
Q ss_pred EEEe
Q 019482 314 ITKL 317 (340)
Q Consensus 314 iw~~ 317 (340)
.||.
T Consensus 529 ~yd~ 532 (557)
T PHA02713 529 TFNV 532 (557)
T ss_pred hcCc
Confidence 4544
No 398
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.09 E-value=0.002 Score=36.08 Aligned_cols=32 Identities=13% Similarity=0.421 Sum_probs=29.1
Q ss_pred ccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482 288 GTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 288 ~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
...|..++|+|...+||.++.+|.|.+++++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 45799999999999999999999999999943
No 399
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.02 Score=53.62 Aligned_cols=147 Identities=10% Similarity=-0.057 Sum_probs=90.5
Q ss_pred ceeEEEecCCCCeEEEe--eCCCeEEEEEccCCeeEE-----Eee-----cCCCCceeeEEEccCCCcceEEEEEecCCc
Q 019482 156 SVLDMDFSLDSEFLATT--STDGSARIWKTEDGVAWT-----FLT-----RNSDEKIELCRFSKDGTKPFLFCTVQRGDK 223 (340)
Q Consensus 156 ~i~~~~~~~~~~~l~~~--~~d~~v~iwd~~~~~~~~-----~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d 223 (340)
.+..+...+|+...++. +.+-.|..||+++-..-. -+. ........++.|.|.-... .+....|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n----~av~l~d 177 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLN----SAVDLSD 177 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccch----hhhhccc
Confidence 56667777787654433 344589999997522111 010 1112345678888875432 3555668
Q ss_pred ceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEe--ecccccccccceeeEEEecCCe
Q 019482 224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN--HWSKRLHLGTSIALVEFCPTQR 301 (340)
Q Consensus 224 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~ 301 (340)
+.|++..+........-.......++++|+|.|+.+++|-..|.+.-|...-.... ....... ...|.++.|-....
T Consensus 178 lsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e-~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 178 LSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEE-NYRVLSVTWLSTQE 256 (1405)
T ss_pred cchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCC-CcceeEEEEeccee
Confidence 88888776644332222233456899999999999999999999998875433211 1111111 35799999987777
Q ss_pred EEEEEe
Q 019482 302 VVLTAS 307 (340)
Q Consensus 302 ~l~~~~ 307 (340)
++++-+
T Consensus 257 flvvy~ 262 (1405)
T KOG3630|consen 257 FLVVYG 262 (1405)
T ss_pred EEEEec
Confidence 666543
No 400
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.03 E-value=0.096 Score=40.32 Aligned_cols=145 Identities=17% Similarity=0.093 Sum_probs=86.2
Q ss_pred ceeEEEecCCCCeEEEeeCC---------CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceE
Q 019482 156 SVLDMDFSLDSEFLATTSTD---------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALL 226 (340)
Q Consensus 156 ~i~~~~~~~~~~~l~~~~~d---------~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i 226 (340)
..+.-..+|+|++++-.-.| |.++.|-.. ++ +..+. ..-...+.++|+.+.+.+ -...+.+.+|
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~-v~~i~-~~v~IsNgl~Wd~d~K~f----Y~iDsln~~V 182 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQ-VELIW-NCVGISNGLAWDSDAKKF----YYIDSLNYEV 182 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEeccC-CC-ceeee-hhccCCccccccccCcEE----EEEccCceEE
Confidence 56777889999985433222 334444332 11 11111 111234678899887764 2555667788
Q ss_pred EEEE--CCCCcE-----Eeeeecc---C-CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEE
Q 019482 227 AVYD--ISTWNK-----IGHKRLL---R-KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVE 295 (340)
Q Consensus 227 ~i~d--~~~~~~-----~~~~~~~---~-~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~ 295 (340)
.-|| ..+|.. +..++.. . -..-.++..-+|++.++.-..++|...|..+++.+..+... ...|++++
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--t~qitscc 260 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--TPQITSCC 260 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--CCceEEEE
Confidence 7777 444432 2122110 1 11234566678888888888899999999999999887654 35899999
Q ss_pred EecC-Ce-EEEEEecC
Q 019482 296 FCPT-QR-VVLTASKE 309 (340)
Q Consensus 296 ~~~~-~~-~l~~~~~d 309 (340)
|--. -. +.+++..+
T Consensus 261 FgGkn~d~~yvT~aa~ 276 (310)
T KOG4499|consen 261 FGGKNLDILYVTTAAK 276 (310)
T ss_pred ecCCCccEEEEEehhc
Confidence 9643 23 34444443
No 401
>PHA02713 hypothetical protein; Provisional
Probab=97.02 E-value=0.046 Score=49.42 Aligned_cols=189 Identities=16% Similarity=0.129 Sum_probs=93.3
Q ss_pred CCCeEEEEecC------CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC-----cEEEEeCC
Q 019482 74 SGDDFVCSTTN------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-----HLRIMHWP 142 (340)
Q Consensus 74 ~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~~d~~ 142 (340)
++..++.|+.+ ..+..||..++... .. .+......-.+++ .-+++..+.|+.++ .+..||..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~--~~----~~m~~~R~~~~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~ 375 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHV--EL----PPMIKNRCRFSLA-VIDDTIYAIGGQNGTNVERTIECYTMG 375 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEe--eC----CCCcchhhceeEE-EECCEEEEECCcCCCCCCceEEEEECC
Confidence 56666777753 24677887766431 11 1111111111222 23677777787654 48889987
Q ss_pred CCceee--ccccCccceeEEEecCCCCeEEEeeCCC-----------------------eEEEEEccCCeeEEEeecCCC
Q 019482 143 SLRIIL--DEPKAHKSVLDMDFSLDSEFLATTSTDG-----------------------SARIWKTEDGVAWTFLTRNSD 197 (340)
Q Consensus 143 ~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----------------------~v~iwd~~~~~~~~~~~~~~~ 197 (340)
+.+-.. .+.........+. -+++..+.|+.++ ++..||.++.+=. .+..-..
T Consensus 376 ~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~-~v~~m~~ 452 (557)
T PHA02713 376 DDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWE-TLPNFWT 452 (557)
T ss_pred CCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEe-ecCCCCc
Confidence 654332 1211111222222 2577777777542 4677887665321 1111111
Q ss_pred CceeeEEEccCCCcceEEEEEecCCc------ceEEEEECCC---CcEEeeeeccCCCeeEEEECCCCCEEEEeeCCC--
Q 019482 198 EKIELCRFSKDGTKPFLFCTVQRGDK------ALLAVYDIST---WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG-- 266 (340)
Q Consensus 198 ~~v~~~~~~~~~~~~~~~~~~~~~~d------~~i~i~d~~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-- 266 (340)
.........-+++. + +.|+.+ ..+..||..+ +..+..+.........+.+ +|+..++|+.++
T Consensus 453 ~r~~~~~~~~~~~I-Y----v~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~ 525 (557)
T PHA02713 453 GTIRPGVVSHKDDI-Y----VVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYM 525 (557)
T ss_pred ccccCcEEEECCEE-E----EEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeeccee
Confidence 11111111223332 2 233322 3467899886 3344333333333333333 778888998888
Q ss_pred cEEEEeccCceEe
Q 019482 267 DICVVDVKKMEIN 279 (340)
Q Consensus 267 ~i~i~d~~~~~~~ 279 (340)
.+-.||..+.+-.
T Consensus 526 ~~e~yd~~~~~W~ 538 (557)
T PHA02713 526 LQDTFNVYTYEWN 538 (557)
T ss_pred ehhhcCccccccc
Confidence 6777787776654
No 402
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.016 Score=54.31 Aligned_cols=148 Identities=9% Similarity=-0.047 Sum_probs=92.5
Q ss_pred CCeeEEEEcCCCCeEEEE--ecCCCEEEEEecCceeeeee----ccccCCCCCCCCCeEEEEEecCCC-eEEEccCCCcE
Q 019482 64 GDPMTIAVNPSGDDFVCS--TTNGGCKLFEVYGGATDINL----LAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHL 136 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~--~~d~~i~iw~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i 136 (340)
-++..+...+|+...++. +.+-.|..||+..-...... .......+.......++.|+|.-. ..+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 345566666777654433 33347888998764332211 111111222345567899998533 45667789999
Q ss_pred EEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeec---CCCCceeeEEEccCCCcc
Q 019482 137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR---NSDEKIELCRFSKDGTKP 212 (340)
Q Consensus 137 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~ 212 (340)
++..+................++++|+|.|+.++.|-..|++.-|... .+....+.. .....|.++.|-.....+
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence 998776544333333445578999999999999999999999988754 333333321 223578999998776643
No 403
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.00 E-value=0.13 Score=41.14 Aligned_cols=163 Identities=9% Similarity=0.034 Sum_probs=103.4
Q ss_pred cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEe
Q 019482 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH 140 (340)
Q Consensus 61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d 140 (340)
+-...+.++.|+|+.+.|++......-.|+=-..++....+... .-.....+.|..++++.++--++..+.++.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~------g~~DpE~Ieyig~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT------GFSDPETIEYIGGNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc------ccCChhHeEEecCCEEEEEehhcceEEEEE
Confidence 44556999999999999988887776666655556655544221 223445678888888877777788888887
Q ss_pred CCCCceeec----------cccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEe---ecC------CCCcee
Q 019482 141 WPSLRIILD----------EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL---TRN------SDEKIE 201 (340)
Q Consensus 141 ~~~~~~~~~----------~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~------~~~~v~ 201 (340)
+........ ..........++|.|....|..+-.-.-+.||........... ... .-..+.
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS 236 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS 236 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence 765432211 1112346789999998888888777677777776533211110 000 012467
Q ss_pred eEEEccCCCcceEEEEEecCCcceEEEEECCC
Q 019482 202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (340)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 233 (340)
++.|.+....+ ++.+..++.+.-.|...
T Consensus 237 gl~~~~~~~~L----LVLS~ESr~l~Evd~~G 264 (316)
T COG3204 237 GLEFNAITNSL----LVLSDESRRLLEVDLSG 264 (316)
T ss_pred cceecCCCCcE----EEEecCCceEEEEecCC
Confidence 78888766553 55666677777777653
No 404
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.97 E-value=0.15 Score=41.73 Aligned_cols=230 Identities=16% Similarity=0.147 Sum_probs=104.9
Q ss_pred eeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC-C
Q 019482 66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-L 144 (340)
Q Consensus 66 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~ 144 (340)
.+++.|.. ...++ ++..+ +.+...+.++.-..+.... .-.+....+....++..+++ +..|.| |...+ +
T Consensus 64 l~~I~f~~-~~g~i-vG~~g-~ll~T~DgG~tW~~v~l~~----~lpgs~~~i~~l~~~~~~l~-~~~G~i--y~T~DgG 133 (302)
T PF14870_consen 64 LNSISFDG-NEGWI-VGEPG-LLLHTTDGGKTWERVPLSS----KLPGSPFGITALGDGSAELA-GDRGAI--YRTTDGG 133 (302)
T ss_dssp EEEEEEET-TEEEE-EEETT-EEEEESSTTSS-EE----T----T-SS-EEEEEEEETTEEEEE-ETT--E--EEESSTT
T ss_pred EEEEEecC-CceEE-EcCCc-eEEEecCCCCCcEEeecCC----CCCCCeeEEEEcCCCcEEEE-cCCCcE--EEeCCCC
Confidence 56777764 33344 44555 5455545444333321110 01123344444444433333 344544 33332 2
Q ss_pred ce-eeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCc
Q 019482 145 RI-ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK 223 (340)
Q Consensus 145 ~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d 223 (340)
+. ..........+..+.-++||+++++++.-....-||.-.. .-..........+..+.|.|++.. ......
T Consensus 134 ~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~-~w~~~~r~~~~riq~~gf~~~~~l------w~~~~G 206 (302)
T PF14870_consen 134 KTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT-TWQPHNRNSSRRIQSMGFSPDGNL------WMLARG 206 (302)
T ss_dssp SSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S-S-EEEE--SSS-EEEEEE-TTS-E------EEEETT
T ss_pred CCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCc-cceEEccCccceehhceecCCCCE------EEEeCC
Confidence 21 1222334457888889999999988876666667775322 122222234567999999999873 334477
Q ss_pred ceEEEEEC-CCCcEEee----eeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccc-cccccceeeEEEe
Q 019482 224 ALLAVYDI-STWNKIGH----KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR-LHLGTSIALVEFC 297 (340)
Q Consensus 224 ~~i~i~d~-~~~~~~~~----~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~i~~~~~~ 297 (340)
+.|+.=+. ...+.-.. .......+..++|.+++...++|+. |.+ +.....++.=+.... .........+.|.
T Consensus 207 g~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~ 284 (302)
T PF14870_consen 207 GQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFV 284 (302)
T ss_dssp TEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEE
T ss_pred cEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEc
Confidence 88888772 22221111 1122334788999998877776654 433 333444443222211 1113458889998
Q ss_pred cCCeEEEEEecCCcEEEE
Q 019482 298 PTQRVVLTASKEWGAMIT 315 (340)
Q Consensus 298 ~~~~~l~~~~~dg~i~iw 315 (340)
++.+-++.| .+|.+.=|
T Consensus 285 ~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 285 NPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp ETTEEEEE--STTEEEEE
T ss_pred CCCceEEEC-CCcEEEEe
Confidence 776656655 56665433
No 405
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.96 E-value=0.14 Score=41.18 Aligned_cols=226 Identities=14% Similarity=0.118 Sum_probs=124.1
Q ss_pred CeeEEEEcCCCCeEEEEecCCCEEEEEecCc-----eeeeeeccccCCCCCCCCCeEEEEEecCCC------------eE
Q 019482 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGG-----ATDINLLAKKMPPLQDAGPQKCLSFSVDGS------------RF 127 (340)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------------~l 127 (340)
..+.|+++|.+..-++....+...+||.... ....................+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 3678999999988888888889999998721 111111110001111234667777775332 35
Q ss_pred EEccCCCcEEEEeCCCCce-----eeccccC-cc-ceeEEEecC--CCCeEEEee-CCCeEEEEEccCCeeEEEeecCCC
Q 019482 128 AAGGVDGHLRIMHWPSLRI-----ILDEPKA-HK-SVLDMDFSL--DSEFLATTS-TDGSARIWKTEDGVAWTFLTRNSD 197 (340)
Q Consensus 128 ~~~~~dg~i~~~d~~~~~~-----~~~~~~~-~~-~i~~~~~~~--~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~ 197 (340)
+.+++||+|.-|...-... ...+... .. --..+++.. .+.+|..+. ..++|.+||-.=.+. . +.....
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~-~-~~g~F~ 181 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPP-P-LPGSFI 181 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccc-c-CCCCcc
Confidence 6778999999998532211 1112111 12 234455543 355665554 568899988542221 1 111000
Q ss_pred C-------------------ceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC--CCeeEEEECC--
Q 019482 198 E-------------------KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR--KPASVLSISL-- 254 (340)
Q Consensus 198 ~-------------------~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~s~-- 254 (340)
. .|+-..-.++... -+.+..-+.|.+||+. ++.++.+.... ..-+.|+..|
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d-----~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~ 255 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRND-----EVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPES 255 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccc-----cccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhh
Confidence 0 0111111222211 2344455789999987 45555543221 2345666655
Q ss_pred ----CCCEEEEeeCCCcEEEEeccCceEeeccccccc----ccceeeEEEec
Q 019482 255 ----DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL----GTSIALVEFCP 298 (340)
Q Consensus 255 ----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~i~~~~~~~ 298 (340)
.|.+|+---.||+|..||..+++.+-.+..... ...++.++|..
T Consensus 256 FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 256 FGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred hCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 456666656799999999998886655543321 13467888865
No 406
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.93 E-value=0.0018 Score=58.76 Aligned_cols=254 Identities=15% Similarity=0.104 Sum_probs=132.1
Q ss_pred EecCCCCeeEEEEcC-CCCeEEEEecCCCEEEEEecC--ceeeeeeccccCCCCCCCCCeEEEEEec---CCCeEEEccC
Q 019482 59 FDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYG--GATDINLLAKKMPPLQDAGPQKCLSFSV---DGSRFAAGGV 132 (340)
Q Consensus 59 ~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~ 132 (340)
+++..+.|-.++|-. +-..++ ..-|.+.||+++- ++....+......+ ....+.-+.|.| +.-++..+..
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p--~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITP--YGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCc--CCCCcceeeecccccccceeeeccC
Confidence 456667777787743 222222 2236788999864 33222222211111 122334455544 6678888888
Q ss_pred CCcEEEEeCCCCceeeccccCccceeEE-----------EecCCCCeEEEeeCCCeEEEEEcc-----CCeeEEEeecCC
Q 019482 133 DGHLRIMHWPSLRIILDEPKAHKSVLDM-----------DFSLDSEFLATTSTDGSARIWKTE-----DGVAWTFLTRNS 196 (340)
Q Consensus 133 dg~i~~~d~~~~~~~~~~~~~~~~i~~~-----------~~~~~~~~l~~~~~d~~v~iwd~~-----~~~~~~~~~~~~ 196 (340)
++.+++..+.+... ..+..|...+..+ ..+|||..++.+..||.++.|.+. ...++...+.+.
T Consensus 204 ~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 204 GGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred CCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence 99999988765433 2233343333332 268999999999999998888753 334445555444
Q ss_pred CCceeeEEEccCCCcc-----eEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCE------------E
Q 019482 197 DEKIELCRFSKDGTKP-----FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKY------------L 259 (340)
Q Consensus 197 ~~~v~~~~~~~~~~~~-----~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~------------l 259 (340)
..+-.|.-|+.+.... ..+.+.+...+..+++|....++++ +......+..+. -++|+. +
T Consensus 283 ~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl--l~~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~ 359 (1283)
T KOG1916|consen 283 KHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL--LDKLIDGVQIVG-PHDGEVTDLSMCQWMTTRL 359 (1283)
T ss_pred CCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh--hhhcccceEeec-CCCccccchhhhHHHHHHH
Confidence 3333333344332210 1222455556778999998888776 222223344444 233332 2
Q ss_pred EEeeCCCcEEEEeccCceEeecccccccccceeeEEE--ec---CCeEEEEEec-CCcEEEEEecCCC
Q 019482 260 AMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF--CP---TQRVVLTASK-EWGAMITKLTVPA 321 (340)
Q Consensus 260 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~--~~---~~~~l~~~~~-dg~i~iw~~~~~~ 321 (340)
+.-+-++.|.+|.-+....... ...|..-+|.+..| || +...+++|+. ...+.+|-.....
T Consensus 360 v~r~v~~~i~~~qn~~a~~~~v-s~~~~~hpV~S~i~v~S~~R~~h~e~~~~~~~nr~~~i~~s~g~~ 426 (1283)
T KOG1916|consen 360 VSRSVDGTIKIWQNRKAQPLVV-SRPHDGHPVLSAIFVTSPERPDHIELITGGPLNRELKIWVSAGEE 426 (1283)
T ss_pred HHhhhHHHHHHhhcchhhhhhh-hhhhhcceeccccccccCCCccccccccCCcchhhhhhhhhcccc
Confidence 2345577788885443222211 12232335554333 22 2234445443 3446666554433
No 407
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=96.91 E-value=0.39 Score=45.40 Aligned_cols=173 Identities=13% Similarity=0.190 Sum_probs=100.3
Q ss_pred CCCCceeEEeeee---ecCC-CccEEEEcCCCCcccCCCceEEEE------eCC---CCCCcccCCeeeEEEecC---CC
Q 019482 1 MEGGGTVTCGSWI---KRPE-NVNLVVLGKSSRASSSPSVLEIFS------FDP---KTTSVYTSPLVTYVFDES---EG 64 (340)
Q Consensus 1 ~~~~~~v~~~~w~---~~~~-~~~~~~~g~~~~~~~~~~~i~i~~------~~~---~~~~~~~~~~~~~~~~~h---~~ 64 (340)
++.+.||..+.|. ...+ ...+++ .-....+.|+. +.. ....+ .+.+...+..+ ..
T Consensus 76 i~~~~PI~qI~fa~~~~~~~~~~~~l~-------Vrt~~st~I~~p~~~~~~~~~~~~~s~i--~~~~l~~i~~~~tgg~ 146 (765)
T PF10214_consen 76 IDDGSPIKQIKFATLSESFDEKSRWLA-------VRTETSTTILRPEYHRVISSIRSRPSRI--DPNPLLTISSSDTGGF 146 (765)
T ss_pred cCCCCCeeEEEecccccccCCcCcEEE-------EEcCCEEEEEEcccccccccccCCcccc--ccceeEEechhhcCCC
Confidence 3567899999998 3211 123455 33445577776 211 11122 22223333322 23
Q ss_pred CeeEEEEcC-CCCeEEEEecCCCEEEEEecCcee----eeeeccccCCC----CCCCCCeEEEEEecCCCeEEEccCCCc
Q 019482 65 DPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGAT----DINLLAKKMPP----LQDAGPQKCLSFSVDGSRFAAGGVDGH 135 (340)
Q Consensus 65 ~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~----~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~ 135 (340)
+...++|+| +...||.....|...||++..... ........... ......-..+.|.++.+.|+.++. ..
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~ 225 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SK 225 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-Cc
Confidence 577899999 556899999999999999922111 11111111111 112244557889888888887765 56
Q ss_pred EEEEeCCCCceee--ccccCccceeEEEecCC--CCeEEEeeCCCeEEEEEccC
Q 019482 136 LRIMHWPSLRIIL--DEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTED 185 (340)
Q Consensus 136 i~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~iwd~~~ 185 (340)
+.++|+++..... ........|.++.-+|. +..|+-. ...|...++..
T Consensus 226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS 277 (765)
T ss_pred eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence 8999998776532 12223357999998886 3333333 25788888776
No 408
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.79 E-value=0.19 Score=39.85 Aligned_cols=190 Identities=11% Similarity=0.002 Sum_probs=119.3
Q ss_pred CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEE-
Q 019482 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF- 191 (340)
Q Consensus 113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~- 191 (340)
.....++-.|||..-+++...+.|--.|..+++....-.+....-..+..-|||..-++-+.. .|.-.|-++.+...-
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~ 140 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFP 140 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEee
Confidence 445678888999988898888888888999988776555555566788899998876664433 455566555443221
Q ss_pred ee-cCCCCceeeEEEccCCCcceEEEEEecC--C-------cceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEE
Q 019482 192 LT-RNSDEKIELCRFSKDGTKPFLFCTVQRG--D-------KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (340)
Q Consensus 192 ~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~-------d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 261 (340)
+. .+.........|.+.|... +++. . .+.|++|+... ...-..++..|||..-++
T Consensus 141 lp~~~a~~nlet~vfD~~G~lW-----Ft~q~G~yGrLdPa~~~i~vfpaPq----------G~gpyGi~atpdGsvwya 205 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLW-----FTGQIGAYGRLDPARNVISVFPAPQ----------GGGPYGICATPDGSVWYA 205 (353)
T ss_pred cccccCCCcccceeeCCCccEE-----EeeccccceecCcccCceeeeccCC----------CCCCcceEECCCCcEEEE
Confidence 11 2233457788899999852 2222 1 12344443332 234567888999998888
Q ss_pred eeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 262 GSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 262 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
.-.++.|-..|..++..............-+.+--+|.|+.-++....+.+.-++-.
T Consensus 206 slagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs 262 (353)
T COG4257 206 SLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPS 262 (353)
T ss_pred eccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcc
Confidence 777788888887776432221111111234555556778877776666666655543
No 409
>PRK13684 Ycf48-like protein; Provisional
Probab=96.77 E-value=0.26 Score=41.41 Aligned_cols=153 Identities=15% Similarity=0.100 Sum_probs=85.4
Q ss_pred ccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC
Q 019482 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (340)
Q Consensus 154 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 233 (340)
...+..+.+.|++.+++++. .|.+..-.-..++............++.+.+.++++. +..+..+.+++=..+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~------~~vg~~G~~~~~s~d~ 244 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNL------WMLARGGQIRFNDPDD 244 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCE------EEEecCCEEEEccCCC
Confidence 34788999999887776665 4655432112233333444444567899999999883 3445566665323343
Q ss_pred CcEEeeeec----cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccc-cccccceeeEEEecCCeEEEEEec
Q 019482 234 WNKIGHKRL----LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR-LHLGTSIALVEFCPTQRVVLTASK 308 (340)
Q Consensus 234 ~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~ 308 (340)
+..-..... ....+..+.+.|++..++++ .+|.+. .....++.-..... .........+.|..+++.++ .+.
T Consensus 245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~ 321 (334)
T PRK13684 245 LESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQ 321 (334)
T ss_pred CCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECC
Confidence 332111111 12357788899988766655 566554 33444433222211 11123577888877766655 446
Q ss_pred CCcEEEEE
Q 019482 309 EWGAMITK 316 (340)
Q Consensus 309 dg~i~iw~ 316 (340)
.|.|.-++
T Consensus 322 ~G~il~~~ 329 (334)
T PRK13684 322 RGVLLRYV 329 (334)
T ss_pred CceEEEec
Confidence 67776654
No 410
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.75 E-value=0.11 Score=46.80 Aligned_cols=114 Identities=11% Similarity=-0.034 Sum_probs=75.4
Q ss_pred eeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee-ccCCCeeEEEEC--CCCCEEEEeeCCCcEEEEecc--
Q 019482 200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSIS--LDGKYLAMGSKDGDICVVDVK-- 274 (340)
Q Consensus 200 v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s--~~~~~l~~~~~dg~i~i~d~~-- 274 (340)
+.-+.-+.-++. .+.......+.|||.+.+....... .....|..+.|. |+|+.+++.+..+.|.+|--.
T Consensus 32 ~~li~gss~~k~-----a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~ 106 (631)
T PF12234_consen 32 PSLISGSSIKKI-----AVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRY 106 (631)
T ss_pred cceEeecccCcE-----EEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccch
Confidence 444545555553 3445567789999999887554433 346789999985 689999998899999998542
Q ss_pred ---C----ceEeecc-cccccccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482 275 ---K----MEINHWS-KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 275 ---~----~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
. ..+++.+ ...+...+|.+..|.++|.+++.+| +.+.|++-..+
T Consensus 107 dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~~~ 158 (631)
T PF12234_consen 107 DYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKWLD 158 (631)
T ss_pred hhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCCcC
Confidence 1 1122222 1233346899999999998777664 44777765444
No 411
>PHA03098 kelch-like protein; Provisional
Probab=96.73 E-value=0.31 Score=44.06 Aligned_cols=184 Identities=8% Similarity=-0.029 Sum_probs=85.2
Q ss_pred cCCCeEEEccCCC------cEEEEeCCCCceeec--cccCccceeEEEecCCCCeEEEeeCC-----CeEEEEEccCCee
Q 019482 122 VDGSRFAAGGVDG------HLRIMHWPSLRIILD--EPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTEDGVA 188 (340)
Q Consensus 122 ~~~~~l~~~~~dg------~i~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~v~iwd~~~~~~ 188 (340)
.++..++.|+.++ .+..||..+.+.... ..........+. -+++.++.|+.+ ..+..||..+.+-
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3555667776542 577888876654321 111111222222 257777788765 3577788776532
Q ss_pred EEEeec-CCCCceeeEEEccCCCcceEEEEEecCC--c----ceEEEEECCCCc--EEeeeeccCCCeeEEEECCCCCEE
Q 019482 189 WTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGD--K----ALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYL 259 (340)
Q Consensus 189 ~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~--d----~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l 259 (340)
. .... .....-.+++ .-++. + .+.||. + ..+..||..+.+ .+......... .++ ...+++..
T Consensus 371 ~-~~~~lp~~r~~~~~~-~~~~~-i----Yv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~-~~~~~~iy 441 (534)
T PHA03098 371 R-EEPPLIFPRYNPCVV-NVNNL-I----YVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCA-IYHDGKIY 441 (534)
T ss_pred e-eCCCcCcCCccceEE-EECCE-E----EEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceE-EEECCEEE
Confidence 2 1111 0110011122 12333 2 233332 1 468889987643 22211111111 122 22356666
Q ss_pred EEeeCC--------CcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC-----CcEEEEEec
Q 019482 260 AMGSKD--------GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-----WGAMITKLT 318 (340)
Q Consensus 260 ~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iw~~~ 318 (340)
+.|+.+ ..+.+||..+.+-............. ++ ...+++.++.||.+ ..+.++|..
T Consensus 442 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 511 (534)
T PHA03098 442 VIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINA-SL-CIFNNKIYVVGGDKYEYYINEIEVYDDK 511 (534)
T ss_pred EECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccc-eE-EEECCEEEEEcCCcCCcccceeEEEeCC
Confidence 777643 23888998876543322111101111 12 22367878888765 345666544
No 412
>PRK13684 Ycf48-like protein; Provisional
Probab=96.70 E-value=0.3 Score=41.07 Aligned_cols=150 Identities=15% Similarity=0.145 Sum_probs=84.7
Q ss_pred CCCeEEEEEecCCCeEEEccCCCcEEEE-eCCCCc-eeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeE
Q 019482 112 AGPQKCLSFSVDGSRFAAGGVDGHLRIM-HWPSLR-IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW 189 (340)
Q Consensus 112 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~-d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~ 189 (340)
.+.+.++.+.|++.+++++. .|.+..- + ..++ -..........+.++.+.++++.++++. .|.+++=..+.+..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCcc
Confidence 45788999999987766654 5654432 2 1222 1111222334789999999988777664 576653233444433
Q ss_pred EEeecC---CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee---eccCCCeeEEEECCCCCEEEEee
Q 019482 190 TFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---RLLRKPASVLSISLDGKYLAMGS 263 (340)
Q Consensus 190 ~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~ 263 (340)
...... ....+..+.+.|++. +...+.++.+.. ....++.-... .........+.|..+++.+++|
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~------~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G- 320 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGE------IWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG- 320 (334)
T ss_pred ccccCCccccccceeeEEEcCCCC------EEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-
Confidence 322211 123477889998877 455566675543 33433322222 1222357777777766666655
Q ss_pred CCCcEEEEe
Q 019482 264 KDGDICVVD 272 (340)
Q Consensus 264 ~dg~i~i~d 272 (340)
..|.|--|+
T Consensus 321 ~~G~il~~~ 329 (334)
T PRK13684 321 QRGVLLRYV 329 (334)
T ss_pred CCceEEEec
Confidence 567776664
No 413
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.63 E-value=0.18 Score=44.40 Aligned_cols=121 Identities=6% Similarity=0.002 Sum_probs=70.0
Q ss_pred CCCCeeEEEEcCCC----CeEEEEecCCCEEEEEecCc-----eeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC
Q 019482 62 SEGDPMTIAVNPSG----DDFVCSTTNGGCKLFEVYGG-----ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV 132 (340)
Q Consensus 62 h~~~v~~~~~~~~~----~~l~~~~~d~~i~iw~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 132 (340)
.-+.|..+.|.|-+ ..|++......|.||.+... +.......+...+++ --...+.|+|....|++-..
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~p--vLpQGCVWHPk~~iL~VLT~ 132 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFP--VLPQGCVWHPKKAILTVLTA 132 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcc--cCCCcccccCCCceEEEEec
Confidence 34559999999853 34555566677999998632 111111111111111 11245789998887766554
Q ss_pred CCcEEEEeCCCC-ceeeccccCccceeEEEecCCCCeEEEeeC-CCeEEEEEcc
Q 019482 133 DGHLRIMHWPSL-RIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKTE 184 (340)
Q Consensus 133 dg~i~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~~ 184 (340)
...-.++++... ..+..-....+-|.|.+|.+||+.|+.+-. .=.-++||-.
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 443345555432 223222355678999999999998776532 3356788743
No 414
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.60 E-value=0.11 Score=46.86 Aligned_cols=120 Identities=13% Similarity=0.204 Sum_probs=76.3
Q ss_pred eEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec--CCCeEEEccCC
Q 019482 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVD 133 (340)
Q Consensus 56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d 133 (340)
..++......+.-+.-+.-++.-++-+....+.|||...+...... .+...+.|.++.|.. +++.+++.+..
T Consensus 22 t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~------~f~~~~~I~dLDWtst~d~qsiLaVGf~ 95 (631)
T PF12234_consen 22 TSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEE------SFSEDDPIRDLDWTSTPDGQSILAVGFP 95 (631)
T ss_pred EEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEee------eecCCCceeeceeeecCCCCEEEEEEcC
Confidence 3444444455666666655554444444458999999887643222 123568999999954 88888888889
Q ss_pred CcEEEEeCC-----C----Cceeec--cccCc-cceeEEEecCCCCeEEEeeCCCeEEEEEc
Q 019482 134 GHLRIMHWP-----S----LRIILD--EPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKT 183 (340)
Q Consensus 134 g~i~~~d~~-----~----~~~~~~--~~~~~-~~i~~~~~~~~~~~l~~~~~d~~v~iwd~ 183 (340)
..|.+|.-. . ...+.. +..+. .+|.+..|.++|.+++.+ ++.+.|+|-
T Consensus 96 ~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 96 HHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred cEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 999998531 1 111211 22333 378999999999766554 367888874
No 415
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.55 E-value=0.29 Score=38.96 Aligned_cols=183 Identities=10% Similarity=0.015 Sum_probs=110.7
Q ss_pred eeEEEEcCCCCeEEEEecCC--CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC
Q 019482 66 PMTIAVNPSGDDFVCSTTNG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS 143 (340)
Q Consensus 66 v~~~~~~~~~~~l~~~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 143 (340)
...+.|..+|.++-+.+.-| .|+.+|+.+++......-. ..---..++...| +.....-.++...+||..+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~------~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~t 119 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP------PRYFGEGITILGD-KLYQLTWKEGTGFVYDPNT 119 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T------TT--EEEEEEETT-EEEEEESSSSEEEEEETTT
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC------ccccceeEEEECC-EEEEEEecCCeEEEEcccc
Confidence 45688877888777777666 7888999988765443221 1112234555433 3444557889999999998
Q ss_pred CceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCC----CCceeeEEEccCCCcceEEEEEe
Q 019482 144 LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS----DEKIELCRFSKDGTKPFLFCTVQ 219 (340)
Q Consensus 144 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~ 219 (340)
.+.+..+.-. ..=..++ .|++.|+.+.....++.+|.++-+....+.-.. -..++.+.|- +|.. .+.
T Consensus 120 l~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~I-----yAN 190 (264)
T PF05096_consen 120 LKKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKI-----YAN 190 (264)
T ss_dssp TEEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEE-----EEE
T ss_pred ceEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEE-----EEE
Confidence 8877666433 3445565 457777777667789999988776666554221 1245566775 4442 344
Q ss_pred cCCcceEEEEECCCCcEEeeeecc---------------CCCeeEEEECCCCCEEEEeeC
Q 019482 220 RGDKALLAVYDISTWNKIGHKRLL---------------RKPASVLSISLDGKYLAMGSK 264 (340)
Q Consensus 220 ~~~d~~i~i~d~~~~~~~~~~~~~---------------~~~i~~~~~s~~~~~l~~~~~ 264 (340)
.=....|...|..+|+.+..+... ..-.+.+++.|..+.+.+.+.
T Consensus 191 VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 191 VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 445677888899999876654211 234789999987666555543
No 416
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.52 E-value=0.24 Score=38.30 Aligned_cols=144 Identities=10% Similarity=-0.023 Sum_probs=82.2
Q ss_pred CCCeEEEEEecCCCeEEEccCC---------CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEE-eeCCCeEEEE
Q 019482 112 AGPQKCLSFSVDGSRFAAGGVD---------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLAT-TSTDGSARIW 181 (340)
Q Consensus 112 ~~~v~~~~~~~~~~~l~~~~~d---------g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~v~iw 181 (340)
......-..+|+|++++-.-.| |.++.|-.. ..+..+...-.--+.++|+.+.+.+.. -+.+-+|.-|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 3445566778999884322111 334444322 111111111122357889887776554 4456677777
Q ss_pred E--ccCCe-----eEEEeecC---CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEE
Q 019482 182 K--TEDGV-----AWTFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLS 251 (340)
Q Consensus 182 d--~~~~~-----~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 251 (340)
| ..+|. .+..+... ..-..-.++...+|.. .++.-..++|...|..+|+.+.++......+++++
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L-----~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitscc 260 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNL-----YVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCC 260 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcE-----EEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEE
Confidence 7 44443 33333221 1111234455556654 45556678899999999999999999999999999
Q ss_pred ECC-CCCEEEEe
Q 019482 252 ISL-DGKYLAMG 262 (340)
Q Consensus 252 ~s~-~~~~l~~~ 262 (340)
|-- +-..+++.
T Consensus 261 FgGkn~d~~yvT 272 (310)
T KOG4499|consen 261 FGGKNLDILYVT 272 (310)
T ss_pred ecCCCccEEEEE
Confidence 953 33444443
No 417
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.52 E-value=0.72 Score=43.25 Aligned_cols=290 Identities=11% Similarity=0.056 Sum_probs=144.2
Q ss_pred ceeEEeeeeecC--CCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEE--EcCC-CCeEE
Q 019482 5 GTVTCGSWIKRP--ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIA--VNPS-GDDFV 79 (340)
Q Consensus 5 ~~v~~~~w~~~~--~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~-~~~l~ 79 (340)
+||..+.--... .+.+++.+.| +..++.+++..-.-.- +......+.| ...+..+. +.++ .++|+
T Consensus 354 gPI~Dm~Vvd~d~q~q~qivtCsG----a~kdgSLRiiRngi~I-----~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylv 423 (1096)
T KOG1897|consen 354 GPIVDMCVVDLDRQGQGQIVTCSG----AFKDGSLRIIRNGIGI-----DELASIDLPG-IKGMWSLKSMVDENYDNYLV 423 (1096)
T ss_pred cceeeEEEEeccccCCceEEEEeC----CCCCCcEEEEeccccc-----ceeeEeecCC-ccceeEeeccccccCCcEEE
Confidence 466666665533 4567777666 6788889998654222 3333455666 55677777 4432 22555
Q ss_pred EEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCCceeeccccCcccee
Q 019482 80 CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL 158 (340)
Q Consensus 80 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~ 158 (340)
.+--+ .-++..+... ....... .-......+..|. .++.|+=... ..|++++-. + ...... ....++
T Consensus 424 lsf~~-eTrvl~i~~e-~ee~~~~------gf~~~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~-~-~~~~W~-~p~~~t 491 (1096)
T KOG1897|consen 424 LSFIS-ETRVLNISEE-VEETEDP------GFSTDEQTIFCSTINGNQLVQVTS-NSIRLVSSA-G-LRSEWR-PPGKIT 491 (1096)
T ss_pred EEecc-ceEEEEEccc-eEEeccc------cccccCceEEEEccCCceEEEEec-ccEEEEcch-h-hhhccc-CCCceE
Confidence 44333 3456665443 1111110 0111222233333 3344443332 357777743 1 222222 233445
Q ss_pred EEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEE-EEEecCCcceE-EEEECCCCcE
Q 019482 159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF-CTVQRGDKALL-AVYDISTWNK 236 (340)
Q Consensus 159 ~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~d~~i-~i~d~~~~~~ 236 (340)
....+.+...++.++.++.+...++..+..........+..+.|+.++|-+...... .++.|..+..+ .+.-......
T Consensus 492 i~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~ 571 (1096)
T KOG1897|consen 492 IGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLIL 571 (1096)
T ss_pred EEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcce
Confidence 455555566777777777777777776653333333445679999999875433310 13334333332 2222333322
Q ss_pred Eeeeec----cCCCeeEEEECCCCCEEEEeeCCCcEEEEec--cCceEeecccccccccceeeEEEecCCeEEEEEecCC
Q 019482 237 IGHKRL----LRKPASVLSISLDGKYLAMGSKDGDICVVDV--KKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW 310 (340)
Q Consensus 237 ~~~~~~----~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 310 (340)
+..... ....|--..+--|..+|.++..||.+..|-+ .++..-..-...-...|+.--.|+..++.-+.+..|.
T Consensus 572 ~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdr 651 (1096)
T KOG1897|consen 572 ITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDR 651 (1096)
T ss_pred eeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCC
Confidence 222211 1233444556667889999999999886654 4444322111011123555555665554433333454
Q ss_pred cEEEEE
Q 019482 311 GAMITK 316 (340)
Q Consensus 311 ~i~iw~ 316 (340)
-..+|.
T Consensus 652 P~viY~ 657 (1096)
T KOG1897|consen 652 PTVIYS 657 (1096)
T ss_pred CEEEEe
Confidence 444443
No 418
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.45 E-value=0.076 Score=45.48 Aligned_cols=88 Identities=13% Similarity=0.203 Sum_probs=63.2
Q ss_pred cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCC-------------cceEEEEEecC
Q 019482 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT-------------KPFLFCTVQRG 221 (340)
Q Consensus 155 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------~~~~~~~~~~~ 221 (340)
..+.++..+|++++.++...=|.|.++|+.++..++.+++-.+..+.-+.....+. ...++.++..-
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 35788999999998888777799999999999888888765554443333322221 12344467777
Q ss_pred CcceEEEEECCCCcEEeeeec
Q 019482 222 DKALLAVYDISTWNKIGHKRL 242 (340)
Q Consensus 222 ~d~~i~i~d~~~~~~~~~~~~ 242 (340)
..|.|.||.++++..+..+..
T Consensus 388 rRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 388 RRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred cCCeEEEEecCCCCEEEEEEe
Confidence 889999999999887755543
No 419
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.29 Score=37.09 Aligned_cols=174 Identities=16% Similarity=0.176 Sum_probs=94.5
Q ss_pred CCCeEEEccC--CCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEE-eeCCCeEEEEEccCCeeEEEeecCCCCc
Q 019482 123 DGSRFAAGGV--DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLAT-TSTDGSARIWKTEDGVAWTFLTRNSDEK 199 (340)
Q Consensus 123 ~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~v~iwd~~~~~~~~~~~~~~~~~ 199 (340)
+|.++.+.+. ...|++||+.+++.+....-....+..=-...-+..+.. .=.+|.-..+|.++-+++..+.-..+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge-- 132 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE-- 132 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCc--
Confidence 4556665554 346999999988876544332222221111121333222 23578888899888888777653333
Q ss_pred eeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec--cC---CCeeEEEECCCCCEEEEeeCCCcEEEEecc
Q 019482 200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL--LR---KPASVLSISLDGKYLAMGSKDGDICVVDVK 274 (340)
Q Consensus 200 v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~---~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 274 (340)
=+.+ ..|++. +..+.....++.-|.++......... .. ..++.+.| -+|...|-.=.+..|...|..
T Consensus 133 GWgL--t~d~~~-----LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~ 204 (262)
T COG3823 133 GWGL--TSDDKN-----LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDPD 204 (262)
T ss_pred ceee--ecCCcc-----eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcCC
Confidence 2344 345554 45555566777777765543322221 11 12333444 245555555455556666666
Q ss_pred CceEeecccc----------cccccceeeEEEecCC-eEEEEE
Q 019482 275 KMEINHWSKR----------LHLGTSIALVEFCPTQ-RVVLTA 306 (340)
Q Consensus 275 ~~~~~~~~~~----------~~~~~~i~~~~~~~~~-~~l~~~ 306 (340)
+|++..++.. ..+.+..+.+++.|++ +++++|
T Consensus 205 sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 205 SGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 6666554421 1113467899999987 555555
No 420
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.33 E-value=0.47 Score=38.98 Aligned_cols=232 Identities=14% Similarity=0.135 Sum_probs=106.1
Q ss_pred CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 142 (340)
...+.+|.|..+..-+++|. .+ .|+...++-........... ....-...++.|..+ +.+++ +..+. .+...+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g--~il~T~DGG~tW~~~~~~~~-~~~~~~l~~I~f~~~-~g~iv-G~~g~-ll~T~D 88 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YG--TILKTTDGGKTWQPVSLDLD-NPFDYHLNSISFDGN-EGWIV-GEPGL-LLHTTD 88 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TT--EEEEESSTTSS-EE-----S------EEEEEEEETT-EEEEE-EETTE-EEEESS
T ss_pred CCceEEEEEecCCEEEEEec-CC--EEEEECCCCccccccccCCC-ccceeeEEEEEecCC-ceEEE-cCCce-EEEecC
Confidence 45788999985555555554 45 24544443322222211100 001123567777543 34444 44553 333333
Q ss_pred CCceeeccc---cCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEe
Q 019482 143 SLRIILDEP---KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (340)
Q Consensus 143 ~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 219 (340)
.++.=..+. ........+....++..++.+ ..|.|+. ..+.|+.-..+.....+.+..+..+++|++ ++.
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~-~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~-----vav 161 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDGSAELAG-DRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRY-----VAV 161 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETTEEEEEE-TT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-E-----EEE
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEc-CCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcE-----EEE
Confidence 333221111 112233334444444444443 3454332 223455444444445567889999999996 566
Q ss_pred cCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEec-cCceEeec--ccccccccceeeEEE
Q 019482 220 RGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDV-KKMEINHW--SKRLHLGTSIALVEF 296 (340)
Q Consensus 220 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~-~~~~~~~~--~~~~~~~~~i~~~~~ 296 (340)
+.......-||.-...-....+.....|.+|.|+|++.+.+++ ..|.|+.=+. ...+.-.. .......-.+..++|
T Consensus 162 s~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~ 240 (302)
T PF14870_consen 162 SSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAY 240 (302)
T ss_dssp ETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEE
T ss_pred ECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEe
Confidence 6666667788865422222333445789999999998877755 7888888772 22222111 111111335899999
Q ss_pred ecCCeEEEEEecC
Q 019482 297 CPTQRVVLTASKE 309 (340)
Q Consensus 297 ~~~~~~l~~~~~d 309 (340)
.+++...++|+..
T Consensus 241 ~~~~~~wa~gg~G 253 (302)
T PF14870_consen 241 RPPNEIWAVGGSG 253 (302)
T ss_dssp SSSS-EEEEESTT
T ss_pred cCCCCEEEEeCCc
Confidence 9998877766554
No 421
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.32 E-value=0.58 Score=40.00 Aligned_cols=138 Identities=15% Similarity=0.184 Sum_probs=73.7
Q ss_pred CCeeEEEEcCCCCeEEEEe-----------cCC-CEEEEEecCce--ee-eeeccccCCCCCCCCCeEEEEEecCCCeEE
Q 019482 64 GDPMTIAVNPSGDDFVCST-----------TNG-GCKLFEVYGGA--TD-INLLAKKMPPLQDAGPQKCLSFSVDGSRFA 128 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~-----------~d~-~i~iw~~~~~~--~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 128 (340)
..+..++|.++|+.+++-. ..+ .|.+++-.++. .. ...... .......+++.+++ +++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~------~l~~p~Gi~~~~~G-lyV 86 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE------ELSMVTGLAVAVGG-VYV 86 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec------CCCCccceeEecCC-EEE
Confidence 3577899999998776643 122 56666543221 11 111111 22345789999988 444
Q ss_pred EccCCCcEEEEeCCCC-----c--eeec-ccc----CccceeEEEecCCCCeEEEeeCC-------------------Ce
Q 019482 129 AGGVDGHLRIMHWPSL-----R--IILD-EPK----AHKSVLDMDFSLDSEFLATTSTD-------------------GS 177 (340)
Q Consensus 129 ~~~~dg~i~~~d~~~~-----~--~~~~-~~~----~~~~i~~~~~~~~~~~l~~~~~d-------------------~~ 177 (340)
+ ......++.|.... + .+.. +.. ++.....++|.|||.+.++-+.. +.
T Consensus 87 ~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~ 165 (367)
T TIGR02604 87 A-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG 165 (367)
T ss_pred e-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence 4 44433333344211 1 1211 211 13357789999999876654411 34
Q ss_pred EEEEEccCCeeEEEeecCCCCceeeEEEccCCCc
Q 019482 178 ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (340)
Q Consensus 178 v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (340)
|.-++...++. ..+.... .....++|+|+|+.
T Consensus 166 i~r~~pdg~~~-e~~a~G~-rnp~Gl~~d~~G~l 197 (367)
T TIGR02604 166 LFRYNPDGGKL-RVVAHGF-QNPYGHSVDSWGDV 197 (367)
T ss_pred EEEEecCCCeE-EEEecCc-CCCccceECCCCCE
Confidence 55555554433 3333232 23678999999874
No 422
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.58 Score=42.52 Aligned_cols=199 Identities=12% Similarity=0.140 Sum_probs=97.6
Q ss_pred CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeecc----ccCccceeEE
Q 019482 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE----PKAHKSVLDM 160 (340)
Q Consensus 85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----~~~~~~i~~~ 160 (340)
..|+|++.... ....... ..+.+-.+.|+.+. .|++...+|++.+|++-. +.+... ......|..+
T Consensus 64 ~~I~If~~sG~-lL~~~~w-------~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec 133 (829)
T KOG2280|consen 64 PYIRIFNISGQ-LLGRILW-------KHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVEC 133 (829)
T ss_pred eeEEEEecccc-chHHHHh-------cCCCeeeecccCCc-eEEEEeccceEEEeecch-hhhcccccccccccCceeEE
Confidence 45788876543 2222222 22477889999776 455668899999999753 222221 1122245555
Q ss_pred EecCCCCeEEEeeCCCeEEEEE-ccCCeeEEEeecCCCCce--eeEEEccCCCcceEEEEEecCCcceEEEEECCCCc-E
Q 019482 161 DFSLDSEFLATTSTDGSARIWK-TEDGVAWTFLTRNSDEKI--ELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-K 236 (340)
Q Consensus 161 ~~~~~~~~l~~~~~d~~v~iwd-~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~ 236 (340)
.+..+|-.+++. +|.+.+-+ ... ..+..+........ .+-...+++..... ++.....--..++-..... .
T Consensus 134 ~~f~~GVavlt~--~g~v~~i~~~~~-~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~--ll~v~~~v~~~~~q~~~~~~q 208 (829)
T KOG2280|consen 134 RFFHNGVAVLTV--SGQVILINGVEE-PKLRKMPDIPYNELPKSCWTVFQPHRQSTI--LLDVDVAVGLHICQVEESRVQ 208 (829)
T ss_pred EEecCceEEEec--CCcEEEEcCCCc-chhhhCCCCCCccCCCcceeEecCCCccee--EEeechhhhhcccceeccccc
Confidence 555566444444 45554433 322 12222222111111 22222233222111 1100000000111111111 1
Q ss_pred EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecC
Q 019482 237 IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (340)
Q Consensus 237 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~ 299 (340)
...+......+..+..||+.++|+.-..+|.|.+-+....+....+.... ..+...++|.-+
T Consensus 209 ~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~-~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 209 LHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTD-HDPPKQMAWCGN 270 (829)
T ss_pred ccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCC-CCchHhceeecC
Confidence 11222223567889999999999999999999999888777665543222 123335555443
No 423
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.28 E-value=0.48 Score=38.58 Aligned_cols=201 Identities=11% Similarity=0.125 Sum_probs=106.8
Q ss_pred CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeecc---cc----CCCCCCCCCeEEEE--EecCCC-eEEEccCC
Q 019482 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLA---KK----MPPLQDAGPQKCLS--FSVDGS-RFAAGGVD 133 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~---~~----~~~~~~~~~v~~~~--~~~~~~-~l~~~~~d 133 (340)
..|..+...|+-+.|++-+ |+.+.++++..-........ .. .........+...+ -...+. .|+++ ..
T Consensus 36 ~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~k 113 (275)
T PF00780_consen 36 SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VK 113 (275)
T ss_pred ceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-EC
Confidence 3499999999877766655 48899999976544331100 00 00112223444444 112333 44444 45
Q ss_pred CcEEEEeCCCC-----ceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCC-----------
Q 019482 134 GHLRIMHWPSL-----RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD----------- 197 (340)
Q Consensus 134 g~i~~~d~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~----------- 197 (340)
..|.+|..... ..... ....+.+..++|. ++.++.|.. ....+.|+.++.....+.....
T Consensus 114 k~i~i~~~~~~~~~f~~~~ke-~~lp~~~~~i~~~--~~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~ 189 (275)
T PF00780_consen 114 KKILIYEWNDPRNSFSKLLKE-ISLPDPPSSIAFL--GNKICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSS 189 (275)
T ss_pred CEEEEEEEECCcccccceeEE-EEcCCCcEEEEEe--CCEEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCC
Confidence 58888887653 22222 2334678899998 566777764 4588889987665443321111
Q ss_pred CceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEe--eeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC
Q 019482 198 EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG--HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (340)
Q Consensus 198 ~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 275 (340)
.++..+... ++.. ++ +. +..-.+.|. .|++.+ .+.. .....++++. ..||+..+. +.|.||++.+
T Consensus 190 ~~~~~~~~~-~~e~-----Ll-~~-~~~g~fv~~-~G~~~r~~~i~W-~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~ 256 (275)
T PF00780_consen 190 KPLGIFQLS-DNEF-----LL-CY-DNIGVFVNK-NGEPSRKSTIQW-SSAPQSVAYS--SPYLIAFSS-NSIEVRSLET 256 (275)
T ss_pred CceEEEEeC-CceE-----EE-Ee-cceEEEEcC-CCCcCcccEEEc-CCchhEEEEE--CCEEEEECC-CEEEEEECcC
Confidence 122222222 2332 11 11 222223333 343322 2222 2244455552 347777665 5599999999
Q ss_pred ceEeeccc
Q 019482 276 MEINHWSK 283 (340)
Q Consensus 276 ~~~~~~~~ 283 (340)
++.++.+.
T Consensus 257 ~~lvQ~i~ 264 (275)
T PF00780_consen 257 GELVQTIP 264 (275)
T ss_pred CcEEEEEE
Confidence 98887664
No 424
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.24 E-value=0.65 Score=39.72 Aligned_cols=228 Identities=16% Similarity=0.174 Sum_probs=103.5
Q ss_pred ccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEec---CC----CCeeEEEEcCCCCeEEEEec--C----C
Q 019482 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE---SE----GDPMTIAVNPSGDDFVCSTT--N----G 85 (340)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~---h~----~~v~~~~~~~~~~~l~~~~~--d----~ 85 (340)
++.|+.++- ..+.|.+++..++.. .|.+..+++. +. .....+-.-|+|+.++++-. + |
T Consensus 87 Rr~Li~PgL-----~SsrIyviD~~~dPr----~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~G 157 (461)
T PF05694_consen 87 RRYLILPGL-----RSSRIYVIDTKTDPR----KPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPG 157 (461)
T ss_dssp S-EEEEEBT-----TT--EEEEE--S-TT----S-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--
T ss_pred CCcEEeeee-----ccCcEEEEECCCCCC----CCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCC
Confidence 445554442 334577776654432 3444444432 11 23445555688988887532 2 4
Q ss_pred CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc--------------------CCCcEEEEeCCCCc
Q 019482 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--------------------VDGHLRIMHWPSLR 145 (340)
Q Consensus 86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------------------~dg~i~~~d~~~~~ 145 (340)
-+.++|-++.+......... .....-+.+.|.|..+.+++.. ...++.+||+.+.+
T Consensus 158 gf~llD~~tf~v~g~We~~~----~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~ 233 (461)
T PF05694_consen 158 GFVLLDGETFEVKGRWEKDR----GPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK 233 (461)
T ss_dssp EEEEE-TTT--EEEE--SB-----TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE
T ss_pred cEEEEcCccccccceeccCC----CCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc
Confidence 57777777655443332211 1123446788888888888753 23579999999998
Q ss_pred eeeccccCcc--ceeEEEec--CCCCe-EEEeeCCCeEEEEEc-cCCe----eEEEeecC--------C--------CCc
Q 019482 146 IILDEPKAHK--SVLDMDFS--LDSEF-LATTSTDGSARIWKT-EDGV----AWTFLTRN--------S--------DEK 199 (340)
Q Consensus 146 ~~~~~~~~~~--~i~~~~~~--~~~~~-l~~~~~d~~v~iwd~-~~~~----~~~~~~~~--------~--------~~~ 199 (340)
.++.+.-..+ ....+.|. |+..+ ++.+.-..+|..|-- +.++ .+..+... . ..-
T Consensus 234 ~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~L 313 (461)
T PF05694_consen 234 LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPL 313 (461)
T ss_dssp EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE---
T ss_pred EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCc
Confidence 8877654433 35567774 44444 444444555555543 3332 11122110 0 234
Q ss_pred eeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc---EEeeeecc----------------CCCeeEEEECCCCCEEE
Q 019482 200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN---KIGHKRLL----------------RKPASVLSISLDGKYLA 260 (340)
Q Consensus 200 v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~---~~~~~~~~----------------~~~i~~~~~s~~~~~l~ 260 (340)
++.+..|.|.++++ +++-..|.|+.||+.... .+.+.... .+...-+..|.||+.|.
T Consensus 314 itDI~iSlDDrfLY----vs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlY 389 (461)
T PF05694_consen 314 ITDILISLDDRFLY----VSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLY 389 (461)
T ss_dssp ---EEE-TTS-EEE----EEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEE
T ss_pred eEeEEEccCCCEEE----EEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEE
Confidence 78999999999753 556678999999997643 22222111 12235577888888887
Q ss_pred Eee
Q 019482 261 MGS 263 (340)
Q Consensus 261 ~~~ 263 (340)
+.+
T Consensus 390 vTn 392 (461)
T PF05694_consen 390 VTN 392 (461)
T ss_dssp EE-
T ss_pred EEe
Confidence 764
No 425
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.20 E-value=0.45 Score=40.70 Aligned_cols=145 Identities=9% Similarity=-0.005 Sum_probs=77.5
Q ss_pred CCeEEEEEecCCCeEEEcc-----------CCC-cEEEEeCCCC--c--eeeccccCccceeEEEecCCCCeEEEeeCCC
Q 019482 113 GPQKCLSFSVDGSRFAAGG-----------VDG-HLRIMHWPSL--R--IILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176 (340)
Q Consensus 113 ~~v~~~~~~~~~~~l~~~~-----------~dg-~i~~~d~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 176 (340)
.....|+|.++|+++++-. ..+ .|.+++-.++ . ....+...-.....+++.+++ .++ ++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 4557889999998776642 223 6777764322 2 122222223356789999888 444 44443
Q ss_pred eEEEEEccCC-----e--eEE-EeecC---CCCceeeEEEccCCCcceEEEEEecC------------------CcceEE
Q 019482 177 SARIWKTEDG-----V--AWT-FLTRN---SDEKIELCRFSKDGTKPFLFCTVQRG------------------DKALLA 227 (340)
Q Consensus 177 ~v~iwd~~~~-----~--~~~-~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~------------------~d~~i~ 227 (340)
-.++.|.... + .+. .+... .......++|.|||.. ++ ..+. ..+.|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~L-Yv---~~G~~~~~~~~~~~~~~~~~~~~~g~i~ 167 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWL-YF---NHGNTLASKVTRPGTSDESRQGLGGGLF 167 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCE-EE---ecccCCCceeccCCCccCcccccCceEE
Confidence 3334344211 1 111 12111 1234778999999973 21 1111 014566
Q ss_pred EEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeC
Q 019482 228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK 264 (340)
Q Consensus 228 i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 264 (340)
-+|...++.. .+...-.....++|+|+|+++++-..
T Consensus 168 r~~pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 168 RYNPDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred EEecCCCeEE-EEecCcCCCccceECCCCCEEEEccC
Confidence 6666655432 22222234568999999988776543
No 426
>PHA03098 kelch-like protein; Provisional
Probab=96.13 E-value=1 Score=40.85 Aligned_cols=188 Identities=10% Similarity=0.054 Sum_probs=86.8
Q ss_pred CCCeEEEEecCC------CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC-----CcEEEEeCC
Q 019482 74 SGDDFVCSTTNG------GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRIMHWP 142 (340)
Q Consensus 74 ~~~~l~~~~~d~------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d~~ 142 (340)
++..++.|+.++ .+..||..+.+... . .. .. ........+. -+++.++.|+.+ ..+..||..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~-~~-~~--~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~ 366 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-V-PE-LI--YPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPG 366 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-C-CC-CC--cccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCC
Confidence 455666666542 46778877665421 1 11 00 0111112222 356677777765 347778877
Q ss_pred CCceeec--cccCccceeEEEecCCCCeEEEeeCC------CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE
Q 019482 143 SLRIILD--EPKAHKSVLDMDFSLDSEFLATTSTD------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (340)
Q Consensus 143 ~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d------~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (340)
+.+-... ........ +++ .-+++..+.|+.+ ..+..||+.+.+-.. ............+...++. +
T Consensus 367 ~~~W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r~~~~~~~~~~~-i-- 440 (534)
T PHA03098 367 ESKWREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK-GSPLPISHYGGCAIYHDGK-I-- 440 (534)
T ss_pred CCceeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeee-cCCCCccccCceEEEECCE-E--
Confidence 6543221 11111111 122 2356777777632 458889987653221 1111100011111222333 2
Q ss_pred EEEEecCCc--------ceEEEEECCCCc--EEeeeeccCCCeeEEEECCCCCEEEEeeCC-----CcEEEEeccCceE
Q 019482 215 FCTVQRGDK--------ALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEI 278 (340)
Q Consensus 215 ~~~~~~~~d--------~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~ 278 (340)
.+.|+.+ ..+.+||..+.+ .+............+. .+++.++.|+.+ +.+.+||..+.+-
T Consensus 441 --yv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 441 --YVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred --EEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 2333321 238889987654 2221211111112222 266777777654 4677888777654
No 427
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.97 E-value=0.21 Score=45.58 Aligned_cols=118 Identities=13% Similarity=0.102 Sum_probs=74.6
Q ss_pred eeEEEEcC--CCCeEEEEecCCCEEEEEecCce-----e-------eeeeccccCCCCCCCCCeEEEEEe--cCCCeEEE
Q 019482 66 PMTIAVNP--SGDDFVCSTTNGGCKLFEVYGGA-----T-------DINLLAKKMPPLQDAGPQKCLSFS--VDGSRFAA 129 (340)
Q Consensus 66 v~~~~~~~--~~~~l~~~~~d~~i~iw~~~~~~-----~-------~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~ 129 (340)
|+.+.... ....|+.+..||.|.+|..+.-. . ...........+.....+++++++ ...++||+
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV 182 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV 182 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence 55555443 44688899999999999874311 0 000000111122245688999998 77889999
Q ss_pred ccCCCcEEEEeCCCC--ceee-ccccCccceeEEEecCCC---C---eEEEeeCCCeEEEEEc
Q 019482 130 GGVDGHLRIMHWPSL--RIIL-DEPKAHKSVLDMDFSLDS---E---FLATTSTDGSARIWKT 183 (340)
Q Consensus 130 ~~~dg~i~~~d~~~~--~~~~-~~~~~~~~i~~~~~~~~~---~---~l~~~~~d~~v~iwd~ 183 (340)
++....|.||-.... +... ....+...|.+|.|-++. . .+++++-.|.+.+|++
T Consensus 183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888888755432 2111 111234478899997643 2 6888889999999888
No 428
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.97 E-value=0.92 Score=39.05 Aligned_cols=145 Identities=12% Similarity=0.066 Sum_probs=82.2
Q ss_pred eEEEEEecCCCeEEEccCCCcEEEEeCCCCce--eeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCe-----
Q 019482 115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV----- 187 (340)
Q Consensus 115 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~----- 187 (340)
...+..++++.+++.+..-..++-|| .++. ..........+..+.+.+++..++++ .+|.+. +....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence 34456677887777665433233344 2221 11122334578999999999877766 456544 3334443
Q ss_pred eEEEeecC-CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee---eccCCCeeEEEECCCCCEEEEee
Q 019482 188 AWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---RLLRKPASVLSISLDGKYLAMGS 263 (340)
Q Consensus 188 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~ 263 (340)
........ ....+..+.|.+++. +...+..|.+.... ..++.=... .....++..+.|.++++.+++|
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~------~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G- 388 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKE------AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG- 388 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCc------EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-
Confidence 22222211 123488899998887 56677777666553 333321111 2224568899988877766666
Q ss_pred CCCcEEEE
Q 019482 264 KDGDICVV 271 (340)
Q Consensus 264 ~dg~i~i~ 271 (340)
.+|.|.-|
T Consensus 389 ~~G~il~~ 396 (398)
T PLN00033 389 NDGVLLRY 396 (398)
T ss_pred CCcEEEEe
Confidence 56766544
No 429
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.97 E-value=1.5 Score=41.35 Aligned_cols=190 Identities=9% Similarity=0.035 Sum_probs=110.3
Q ss_pred CCeEEEccCCCcEEEEeCCCCceeeccccCccc--------eeEEEec----------------CCCCeEEEeeCCCeEE
Q 019482 124 GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS--------VLDMDFS----------------LDSEFLATTSTDGSAR 179 (340)
Q Consensus 124 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--------i~~~~~~----------------~~~~~l~~~~~d~~v~ 179 (340)
+..++.++.++.|.-.|..+++.+.++...... ...+.+. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 446777777889999999999887765432210 1122221 1344788888899999
Q ss_pred EEEccCCeeEEEeecCCCCcee-------------eEEEcc---CCCcceEEEEEecC----------CcceEEEEECCC
Q 019482 180 IWKTEDGVAWTFLTRNSDEKIE-------------LCRFSK---DGTKPFLFCTVQRG----------DKALLAVYDIST 233 (340)
Q Consensus 180 iwd~~~~~~~~~~~~~~~~~v~-------------~~~~~~---~~~~~~~~~~~~~~----------~d~~i~i~d~~~ 233 (340)
-.|.++|+.+..+... +.+. .+.-.| ++. ++.++ .++.|+-+|.++
T Consensus 274 ALDA~TGk~~W~fg~~--G~vdl~~~~g~~~~g~~~~ts~P~V~~g~------VIvG~~v~d~~~~~~~~G~I~A~Da~T 345 (764)
T TIGR03074 274 ALDADTGKLCEDFGNN--GTVDLTAGMGTTPPGYYYPTSPPLVAGTT------VVIGGRVADNYSTDEPSGVIRAFDVNT 345 (764)
T ss_pred EEECCCCCEEEEecCC--CceeeecccCcCCCcccccccCCEEECCE------EEEEecccccccccCCCcEEEEEECCC
Confidence 9999999988765321 1110 001111 222 22221 268899999999
Q ss_pred CcEEeeeecc---------C--------CCe-eEEEECCCCCEEEEee------------------CCCcEEEEeccCce
Q 019482 234 WNKIGHKRLL---------R--------KPA-SVLSISLDGKYLAMGS------------------KDGDICVVDVKKME 277 (340)
Q Consensus 234 ~~~~~~~~~~---------~--------~~i-~~~~~s~~~~~l~~~~------------------~dg~i~i~d~~~~~ 277 (340)
|+.+-.+... . ..+ ..++++|+...++.+. ..+.|.-.|.++++
T Consensus 346 Gkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk 425 (764)
T TIGR03074 346 GALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGK 425 (764)
T ss_pred CcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCc
Confidence 9877554321 0 011 2345556555555432 12456777888888
Q ss_pred Eeecccccccc-------cceeeEEEec-CCe---EEEEEecCCcEEEEEecCCC
Q 019482 278 INHWSKRLHLG-------TSIALVEFCP-TQR---VVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 278 ~~~~~~~~~~~-------~~i~~~~~~~-~~~---~l~~~~~dg~i~iw~~~~~~ 321 (340)
..-.+...|++ ....-+.+.. +|+ .++.++++|.+++.|-+..+
T Consensus 426 ~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 426 ERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred eEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 77655443431 1111122322 553 78889999988888876543
No 430
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.95 E-value=0.83 Score=38.41 Aligned_cols=71 Identities=13% Similarity=0.030 Sum_probs=38.3
Q ss_pred ceeeEEEccCCCcceE--EEEEecCCcceEEEEECCCCcEEeee----eccCCCeeEEEECCCCCEEEEeeCCCcEE
Q 019482 199 KIELCRFSKDGTKPFL--FCTVQRGDKALLAVYDISTWNKIGHK----RLLRKPASVLSISLDGKYLAMGSKDGDIC 269 (340)
Q Consensus 199 ~v~~~~~~~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 269 (340)
.+..+.|.+.....-+ ..++..-..+.|....++....+... ......+..+++.|||.+.++...+|.|.
T Consensus 254 ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 254 APTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp -EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4555666544332100 01334444667777777644332221 12334688999999999888888888774
No 431
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=95.91 E-value=1.3 Score=40.29 Aligned_cols=164 Identities=15% Similarity=0.103 Sum_probs=87.8
Q ss_pred CCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc--eeeccccCcc--ceeEEEecC------CCCeEEEeeC-C---C
Q 019482 111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR--IILDEPKAHK--SVLDMDFSL------DSEFLATTST-D---G 176 (340)
Q Consensus 111 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~--~i~~~~~~~------~~~~l~~~~~-d---~ 176 (340)
-...|-.+.|.++++.+++...+|.|.+||...+. .+......+. -+.+ .|-+ ...++++.+. + -
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~ 206 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKL 206 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcE
Confidence 35788999999999999999999999999993222 1111111111 1111 2222 1334444443 2 3
Q ss_pred eEEEEEc-cCCeeEEEee--cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeecc---C---CCe
Q 019482 177 SARIWKT-EDGVAWTFLT--RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL---R---KPA 247 (340)
Q Consensus 177 ~v~iwd~-~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~---~~i 247 (340)
..+++.+ .....+..+. ...........|.-+...+ +.+ .+++|.+|++.+.+..+..... . ..+
T Consensus 207 ~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~L--Y~l----~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~ 280 (670)
T PF10395_consen 207 SYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKL--YQL----SKKTISSYSIPNFQIQKTISLPSIIDKESDDL 280 (670)
T ss_pred EEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEE--EEE----eCCEEEEEEcCCceEEEEEEechhhccccccc
Confidence 5777777 1222223332 1111123334444333321 112 6789999999888766555433 1 123
Q ss_pred eEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc
Q 019482 248 SVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK 283 (340)
Q Consensus 248 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 283 (340)
.++. .|..+.++.+ .++.|++.|+.-...+....
T Consensus 281 vSl~-~~s~nRvLLs-~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 281 VSLK-PPSPNRVLLS-VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred eEee-cCCCCeEEEE-cCCEEEEEeehhhhhhhhhh
Confidence 3332 2344444444 35789999987665555443
No 432
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=1.4 Score=37.88 Aligned_cols=120 Identities=6% Similarity=0.049 Sum_probs=78.0
Q ss_pred CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC
Q 019482 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (340)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~ 141 (340)
.+++|.++.|++|.+.||+--.+..|.+++....+.......+.. .....|....|+.+ .-+|.....| +.+|..
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck---~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v 139 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECK---TKNANILGFCWTSS-TEIAFITDQG-IEFYQV 139 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhc---cCcceeEEEEEecC-eeEEEEecCC-eEEEEE
Confidence 456899999999999999999999999999865544333322111 12356889999866 4566655444 677765
Q ss_pred CCCc-eeeccccCccceeEEEecCCCCeEEEee--CCCeEEEEEccCC
Q 019482 142 PSLR-IILDEPKAHKSVLDMDFSLDSEFLATTS--TDGSARIWKTEDG 186 (340)
Q Consensus 142 ~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~v~iwd~~~~ 186 (340)
...+ .++....+.-.|.-..|.++.+.++-++ ..+++.=+.++++
T Consensus 140 ~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 140 LPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred chhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 4333 3444445556888899999887644333 3444444444443
No 433
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.53 E-value=0.49 Score=41.00 Aligned_cols=150 Identities=15% Similarity=0.111 Sum_probs=89.7
Q ss_pred cCCCCeEE-EeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEE--EEEecCCcceEEEEECCC-CcEEe
Q 019482 163 SLDSEFLA-TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF--CTVQRGDKALLAVYDIST-WNKIG 238 (340)
Q Consensus 163 ~~~~~~l~-~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~d~~i~i~d~~~-~~~~~ 238 (340)
..+..+|. .|.....++--|++.|+.+..+..+.. + -+.|.|..+..-+. ..+.|-.+..|.-.|.+- +..+.
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~dd--v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD--V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCc--c-eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence 33445443 455566788889999999999875543 3 57777764321110 024444566666667653 32222
Q ss_pred eeeccCCCeeEEEEC----CCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEE
Q 019482 239 HKRLLRKPASVLSIS----LDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI 314 (340)
Q Consensus 239 ~~~~~~~~i~~~~~s----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 314 (340)
... .....+.-.|+ -...++++++..|.|++||--.-.....+ .+- +..|..+..+.+|.++++.+.. .+.+
T Consensus 553 v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtal-P~l-G~aIk~idvta~Gk~ilaTCk~-yllL 628 (776)
T COG5167 553 VVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTAL-PGL-GDAIKHIDVTANGKHILATCKN-YLLL 628 (776)
T ss_pred eee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcC-ccc-ccceeeeEeecCCcEEEEeecc-eEEE
Confidence 221 11122222233 24569999999999999996443332222 223 6789999999999988777654 5666
Q ss_pred EEecC
Q 019482 315 TKLTV 319 (340)
Q Consensus 315 w~~~~ 319 (340)
-+++.
T Consensus 629 ~d~~i 633 (776)
T COG5167 629 TDVPI 633 (776)
T ss_pred Eeccc
Confidence 66653
No 434
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=95.45 E-value=2.5 Score=40.22 Aligned_cols=166 Identities=11% Similarity=0.044 Sum_probs=97.2
Q ss_pred cCCCCeeEEEEc---C--C--CCeEEEEecCCCEEEEEecCcee-------eeeeccccCCCCC----CCCCeEEEEEec
Q 019482 61 ESEGDPMTIAVN---P--S--GDDFVCSTTNGGCKLFEVYGGAT-------DINLLAKKMPPLQ----DAGPQKCLSFSV 122 (340)
Q Consensus 61 ~h~~~v~~~~~~---~--~--~~~l~~~~~d~~i~iw~~~~~~~-------~~~~~~~~~~~~~----~~~~v~~~~~~~ 122 (340)
.-..+|..|.|. . + .++|++ -....+.|+...-.+. ...+.......+. ...+.-+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456789999998 2 1 235544 4444588887322211 0011111111111 234667899999
Q ss_pred -CCCeEEEccCCCcEEEEeCCCCce----eeccc----c-------CccceeEEEecCCCCeEEEeeCCCeEEEEEccCC
Q 019482 123 -DGSRFAAGGVDGHLRIMHWPSLRI----ILDEP----K-------AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG 186 (340)
Q Consensus 123 -~~~~l~~~~~dg~i~~~d~~~~~~----~~~~~----~-------~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~ 186 (340)
+...||+....|...||++..... ..... + ....-..+.|.++.+.|+.++. ..+.++|+++.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 566999999999999999921110 00000 1 1123447889888888888875 57999999887
Q ss_pred eeEE-EeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC
Q 019482 187 VAWT-FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (340)
Q Consensus 187 ~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 233 (340)
.... .........|..+.-+|......+ +++ ...|...|+..
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~F--iLT---s~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVF--ILT---SKEIIWLDVKS 277 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEE--EEe---cCeEEEEEccC
Confidence 6643 233334457888888887443221 233 35577777765
No 435
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.43 E-value=0.14 Score=39.96 Aligned_cols=67 Identities=15% Similarity=0.101 Sum_probs=50.0
Q ss_pred ECCCCCEEEEeeCCCcEEEEeccCceEeecc------ccc------ccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482 252 ISLDGKYLAMGSKDGDICVVDVKKMEINHWS------KRL------HLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 252 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
+..+++++++.+.+|.+++||+.+++..... ... .....|..+.++.+|.-|++-+ +|..+.|+.+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4467889999999999999999998765332 111 1245789999999998777765 47788888765
No 436
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.34 E-value=1.6 Score=37.41 Aligned_cols=194 Identities=12% Similarity=0.049 Sum_probs=103.6
Q ss_pred eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCc-c
Q 019482 77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-K 155 (340)
Q Consensus 77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~ 155 (340)
.+..+..+|.+.-.|.+++.......... ....+.+-.+..+|+ ++.++.++.+..+|..+++.+....... -
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~-----~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~ 143 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLG-----AVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSP 143 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcC-----cceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCe
Confidence 45555778888888888877544332211 011122222223675 7778889999999988888877665544 1
Q ss_pred ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCC--CCceeeEEEccCCCcceEEEEEecCC--cceEEEEEC
Q 019482 156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS--DEKIELCRFSKDGTKPFLFCTVQRGD--KALLAVYDI 231 (340)
Q Consensus 156 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~--d~~i~i~d~ 231 (340)
.+..-..-.++ .+..++.++.+...|..+++..-...... ...+..--...++. +..+.. ++.+.-.|.
T Consensus 144 ~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~------vy~~~~~~~~~~~a~~~ 216 (370)
T COG1520 144 YYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT------VYVGSDGYDGILYALNA 216 (370)
T ss_pred EEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce------EEEecCCCcceEEEEEc
Confidence 11111222233 34444467889888888888766644221 11111111122332 333333 557778888
Q ss_pred CCCcEEeeeeccC----CCeeEE-EECC----CCCEEEEeeCCCcEEEEeccCceEeeccc
Q 019482 232 STWNKIGHKRLLR----KPASVL-SISL----DGKYLAMGSKDGDICVVDVKKMEINHWSK 283 (340)
Q Consensus 232 ~~~~~~~~~~~~~----~~i~~~-~~s~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 283 (340)
.+++..-..+... ..+... .+.. .+.-++.++.++.+...|..+++.+-...
T Consensus 217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~ 277 (370)
T COG1520 217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFP 277 (370)
T ss_pred cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEe
Confidence 8887654432111 111001 1100 11223556667778888888888776553
No 437
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.21 E-value=0.19 Score=39.24 Aligned_cols=65 Identities=14% Similarity=0.188 Sum_probs=47.4
Q ss_pred EecCCCeEEEccCCCcEEEEeCCCCceeecc------c--------cCccceeEEEecCCCCeEEEeeCCCeEEEEEccC
Q 019482 120 FSVDGSRFAAGGVDGHLRIMHWPSLRIILDE------P--------KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED 185 (340)
Q Consensus 120 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~------~--------~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~ 185 (340)
+..+++++++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4457889999999999999999987754332 1 2334678888888887666665 57788888653
No 438
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.18 E-value=0.097 Score=28.42 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=25.8
Q ss_pred CCeeEEEECCCC---CEEEEeeCCCcEEEEeccC
Q 019482 245 KPASVLSISLDG---KYLAMGSKDGDICVVDVKK 275 (340)
Q Consensus 245 ~~i~~~~~s~~~---~~l~~~~~dg~i~i~d~~~ 275 (340)
+.+.++.|||+. .+|+.+-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 357899999854 5888888889999999985
No 439
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=95.12 E-value=1.8 Score=37.84 Aligned_cols=114 Identities=11% Similarity=0.050 Sum_probs=61.5
Q ss_pred cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCC------CeEEEcc---
Q 019482 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG------SRFAAGG--- 131 (340)
Q Consensus 61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~--- 131 (340)
..-...+.|+|.|||+.|++--..|.|++++..+..................+....|+++|+- .+|+...
T Consensus 27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~ 106 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYK 106 (454)
T ss_pred CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence 3456688999999998776655468899987654432111111101011135778999999874 2444332
Q ss_pred -------CCCcEEEEeCCCC-------ceeec-cccC-ccceeEEEecCCCCeEEEeeC
Q 019482 132 -------VDGHLRIMHWPSL-------RIILD-EPKA-HKSVLDMDFSLDSEFLATTST 174 (340)
Q Consensus 132 -------~dg~i~~~d~~~~-------~~~~~-~~~~-~~~i~~~~~~~~~~~l~~~~~ 174 (340)
....|.-|.+... +.+.. .... ...-..|+|.|||.++++.+.
T Consensus 107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence 1223444544321 11111 1110 012356889999987665553
No 440
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.06 E-value=1.7 Score=37.95 Aligned_cols=141 Identities=11% Similarity=0.032 Sum_probs=78.1
Q ss_pred CCCeEEE-EecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCC-------eEEEccCCCcEEEEeCCC-C
Q 019482 74 SGDDFVC-STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-------RFAAGGVDGHLRIMHWPS-L 144 (340)
Q Consensus 74 ~~~~l~~-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~~~d~~~-~ 144 (340)
+...|+. +.....++-.|++.++.+..... + ..+ -+.|.|+.+ .-++|-.+..|.-.|.+- +
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~-------~-ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~g 548 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDL-------K-DDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARG 548 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeec-------C-Ccc-eeecCCchhHHhcCccceEEeecccceEEecccccC
Confidence 4444443 44445677777777766544432 1 222 466766432 223344455555555543 2
Q ss_pred ceeeccccCcc-----ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEe
Q 019482 145 RIILDEPKAHK-----SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (340)
Q Consensus 145 ~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 219 (340)
..+. ...... ...+..-. .+.+++.++..|-|++||.- |....+..+.....|..+..+.+|+++ .
T Consensus 549 NKi~-v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~i------l 619 (776)
T COG5167 549 NKIK-VVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHI------L 619 (776)
T ss_pred Ccee-eeeehhccccccccccccc-cCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEE------E
Confidence 2221 111122 22333222 34589999999999999953 444444444556679999999999962 2
Q ss_pred cCCcceEEEEECC
Q 019482 220 RGDKALLAVYDIS 232 (340)
Q Consensus 220 ~~~d~~i~i~d~~ 232 (340)
+.....+.+-|++
T Consensus 620 aTCk~yllL~d~~ 632 (776)
T COG5167 620 ATCKNYLLLTDVP 632 (776)
T ss_pred EeecceEEEEecc
Confidence 2334566677764
No 441
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.00 E-value=1.5 Score=35.31 Aligned_cols=196 Identities=12% Similarity=-0.011 Sum_probs=109.8
Q ss_pred CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccC--ccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeE-
Q 019482 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA--HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW- 189 (340)
Q Consensus 113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~- 189 (340)
+-+..+.++. ++...+..+.-+++.|+.+.......... .+-..++..+ |++...+..|.-+.+.|+.+.+..
T Consensus 87 ~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--CCEEEEeeccCcEEEEECCCCCCce
Confidence 4566777764 46666777778999999876644332221 1233444444 888888886667788888765432
Q ss_pred --EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee--eccCCCeeEEEECCCCCEEEEeeCC
Q 019482 190 --TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK--RLLRKPASVLSISLDGKYLAMGSKD 265 (340)
Q Consensus 190 --~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~d 265 (340)
.... ........++.|- ++ ...+..|+-+.+-|+........+ ......+.++..+++..+++...+
T Consensus 163 lagrya-~~~~d~~~v~ISG--n~-----AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e- 233 (370)
T COG5276 163 LAGRYA-LPGGDTHDVAISG--NY-----AYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE- 233 (370)
T ss_pred eeeeec-cCCCCceeEEEec--Ce-----EEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc-
Confidence 2222 1222234555554 33 344556778999998766532111 112236778888887777766543
Q ss_pred CcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482 266 GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD 322 (340)
Q Consensus 266 g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (340)
-+.+-|..+.+-...+-......++.--.+.-.+++......+..+-+-++..|..
T Consensus 234 -gvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~s 289 (370)
T COG5276 234 -GVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPS 289 (370)
T ss_pred -ceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCC
Confidence 37777776654332221111112221112333455666666666666666665543
No 442
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.98 E-value=2.2 Score=36.97 Aligned_cols=278 Identities=11% Similarity=0.079 Sum_probs=138.3
Q ss_pred ccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC-----CCCeEEEEecCCCEEEEEec
Q 019482 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-----SGDDFVCSTTNGGCKLFEVY 93 (340)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~l~~~~~d~~i~iw~~~ 93 (340)
...++.|+ ..|.++||.-....... ....++..+ ..+|..++.-+ +...||. -.-..+.+|.+.
T Consensus 37 ~d~IivGS------~~G~LrIy~P~~~~~~~-~~lllE~~l---~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~ 105 (418)
T PF14727_consen 37 SDKIIVGS------YSGILRIYDPSGNEFQP-EDLLLETQL---KDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVS 105 (418)
T ss_pred ccEEEEec------cccEEEEEccCCCCCCC-ccEEEEEec---CCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEE
Confidence 34555555 55669999763322111 122333333 45777777643 2234444 455668899884
Q ss_pred Ccee--------eeeeccccCCCCCCCCCeEEEEEec----C-CCeEEEccCCCcEEEEeCCCCceeeccccCccceeEE
Q 019482 94 GGAT--------DINLLAKKMPPLQDAGPQKCLSFSV----D-GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (340)
Q Consensus 94 ~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~----~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~ 160 (340)
.... ......++. -......+..-| . ..+|++-+.||.+.+|+-+.-.....+.. .--...+
T Consensus 106 ~~~g~~~~g~~~~L~~~yeh~----l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl 180 (418)
T PF14727_consen 106 LVDGTVEHGNQYQLELIYEHS----LQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPL 180 (418)
T ss_pred ecCCCcccCcEEEEEEEEEEe----cccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCe
Confidence 3211 111111110 122334444444 2 35788889999999999654433322222 2233457
Q ss_pred EecCCCCeEEEeeCCCeEEEEEccCC---------------------eeEEEeecCCCCceeeEEEccCC-CcceEEEEE
Q 019482 161 DFSLDSEFLATTSTDGSARIWKTEDG---------------------VAWTFLTRNSDEKIELCRFSKDG-TKPFLFCTV 218 (340)
Q Consensus 161 ~~~~~~~~l~~~~~d~~v~iwd~~~~---------------------~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~ 218 (340)
.+.+....|++++.+..+.-|....- +....+...-.+.+..+..-... .... ++
T Consensus 181 ~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~---Iv 257 (418)
T PF14727_consen 181 CYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESD---IV 257 (418)
T ss_pred EEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCce---EE
Confidence 88888888999988888888865320 00111111112233333322211 1101 11
Q ss_pred ecCCcceEEEEECCCCcEEeeeeccCCCeeEEE-EC----CCC---CEEEEeeCCCcEEEEeccCceEeecccccccccc
Q 019482 219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLS-IS----LDG---KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS 290 (340)
Q Consensus 219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~-~s----~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 290 (340)
.-+ ...+.+.+. +|... ..+..+....++. +. .++ ..+++++.++.+.||.=.+-.-...+ .+..-.
T Consensus 258 vLg-er~Lf~l~~-~G~l~-~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l--~~~PVa 332 (418)
T PF14727_consen 258 VLG-ERSLFCLKD-NGSLR-FQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQL--PHVPVA 332 (418)
T ss_pred EEe-cceEEEEcC-CCeEE-EEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCC--CCCCEE
Confidence 111 334445544 34333 2232232222222 21 122 24888889999999964433322222 221112
Q ss_pred eeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482 291 IALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 291 i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
+.-..|..-...|++-+.+|.+.+--+-..
T Consensus 333 l~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 333 LSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred EEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 333334334567999999999999988643
No 443
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.89 E-value=0.17 Score=27.47 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=25.3
Q ss_pred ceeEEEecCCC---CeEEEeeCCCeEEEEEccC
Q 019482 156 SVLDMDFSLDS---EFLATTSTDGSARIWKTED 185 (340)
Q Consensus 156 ~i~~~~~~~~~---~~l~~~~~d~~v~iwd~~~ 185 (340)
.+.+++|+|+. .+|+.+-.-+.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 57899999844 5888888889999999985
No 444
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.83 E-value=0.76 Score=39.33 Aligned_cols=141 Identities=13% Similarity=0.084 Sum_probs=83.9
Q ss_pred eEEEecCCCCeEEEeeCCCeEEEEEccC--CeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc
Q 019482 158 LDMDFSLDSEFLATTSTDGSARIWKTED--GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (340)
Q Consensus 158 ~~~~~~~~~~~l~~~~~d~~v~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~ 235 (340)
+.+-|...++.++ +...|.+.=|-+.. ......+.....++|.++.||+|.+. ++.-..+++|.+++....+
T Consensus 26 ngvFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnki-----lAVQR~~~~v~f~nf~~d~ 99 (657)
T KOG2377|consen 26 NGVFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKI-----LAVQRTSKTVDFCNFIPDN 99 (657)
T ss_pred cceeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcce-----EEEEecCceEEEEecCCCc
Confidence 3444543333333 23344455555432 22333444445678999999999997 7788889999999874333
Q ss_pred EE----eeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEe
Q 019482 236 KI----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS 307 (340)
Q Consensus 236 ~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 307 (340)
.. ...+.....|....|+.+ .-+|..+..| +-+|.....+....+-..+ .-.|+...|.++-+.+.-++
T Consensus 100 ~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~-~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 100 SQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSH-NLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhc-ccCccEEEEccccceEeeec
Confidence 22 112233456888889766 6677766555 7777665433222222333 45788888988877654444
No 445
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.65 E-value=2.6 Score=36.35 Aligned_cols=147 Identities=14% Similarity=0.103 Sum_probs=80.1
Q ss_pred eeEEEecCCCCeEEEeeCCCeEEEEEccCCee-EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc
Q 019482 157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (340)
Q Consensus 157 i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~ 235 (340)
...+..++++.+++.+..-..++-||- ++. -..........+..+.|.+++.. +..+..+.+.. ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l------~l~g~~G~l~~-S~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGL------WLLTRGGGLYV-SKGTGL 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCE------EEEeCCceEEE-ecCCCC
Confidence 344566778877777664333333442 322 12233334456889999999884 44455565443 333332
Q ss_pred -----EEeeeec--cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc-ccccccceeeEEEecCCeEEEEEe
Q 019482 236 -----KIGHKRL--LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK-RLHLGTSIALVEFCPTQRVVLTAS 307 (340)
Q Consensus 236 -----~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~ 307 (340)
....... ....+..+.+.+++..+++| .+|.+..-. ..++.-.... ..........+.|.++++.+++|
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G- 388 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG- 388 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-
Confidence 1122221 12358889998887766666 567655543 3444322211 11113468899998877766665
Q ss_pred cCCcEEEE
Q 019482 308 KEWGAMIT 315 (340)
Q Consensus 308 ~dg~i~iw 315 (340)
.+|.|.-|
T Consensus 389 ~~G~il~~ 396 (398)
T PLN00033 389 NDGVLLRY 396 (398)
T ss_pred CCcEEEEe
Confidence 56665433
No 446
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.61 E-value=4 Score=38.24 Aligned_cols=81 Identities=16% Similarity=0.178 Sum_probs=54.5
Q ss_pred CCeeEEEEcCCCCeEEEEecCCCEEEEEecCc----------eeeeee----ccccCCCCCCCCCeEEEEEecC---CCe
Q 019482 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGG----------ATDINL----LAKKMPPLQDAGPQKCLSFSVD---GSR 126 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~----------~~~~~~----~~~~~~~~~~~~~v~~~~~~~~---~~~ 126 (340)
-.|..+.++|+|+++|..+..| |.|-.+... ...... .............|..+.|+|. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3588999999999999998877 666655321 110010 1111111234568899999995 467
Q ss_pred EEEccCCCcEEEEeCCCCc
Q 019482 127 FAAGGVDGHLRIMHWPSLR 145 (340)
Q Consensus 127 l~~~~~dg~i~~~d~~~~~ 145 (340)
|++-..|+++++||+....
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 8888889999999996543
No 447
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=94.52 E-value=2 Score=35.03 Aligned_cols=118 Identities=14% Similarity=0.198 Sum_probs=69.4
Q ss_pred CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEee------CCCeEEEEEccCCeeEEEeecC----CCCceeeE
Q 019482 134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS------TDGSARIWKTEDGVAWTFLTRN----SDEKIELC 203 (340)
Q Consensus 134 g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~d~~v~iwd~~~~~~~~~~~~~----~~~~v~~~ 203 (340)
..|++||..+.+-..--.+-.+.|.++.|..+.+.++.|. ....+..||+.+.. ...+... -.+++..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEEE
Confidence 3589999877665443334556899999987777777664 35578899987654 3333321 23567777
Q ss_pred EEccCCCcceEEEEEecCCcceEEEEECCCCcEEee-eeccCCCeeEEEE
Q 019482 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRLLRKPASVLSI 252 (340)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~ 252 (340)
.+..+....+.+.......+..|..||-.++..+.. .......|..+.+
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~ 144 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV 144 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence 775433321211111244566788888777766544 2222344555544
No 448
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.52 E-value=0.0063 Score=51.59 Aligned_cols=144 Identities=12% Similarity=0.052 Sum_probs=97.9
Q ss_pred eeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE
Q 019482 157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (340)
Q Consensus 157 i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 236 (340)
.....|.|.+..++.++.+..+..||-. ++...... ..+....++|..++... ++.+...+.+.+||+.+...
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n--~tg~aldm~wDkegdvl----avlAek~~piylwd~n~eyt 109 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN--PTGKALDMAWDKEGDVL----AVLAEKTGPIYLWDVNSEYT 109 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhh-cceecccC--CchhHhhhhhccccchh----hhhhhcCCCeeechhhhhhH
Confidence 3456788877778888888899999953 44444333 33446678888887763 45556778899999986442
Q ss_pred EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCC
Q 019482 237 IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW 310 (340)
Q Consensus 237 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 310 (340)
-..-.+....-.-+.|++.+..++.+...|.+.|++..+.+..... +.+...+++++|.+.+. .+.++.|.
T Consensus 110 qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~--Gkh~RRgtq~av~lEd~-vil~dcd~ 180 (615)
T KOG2247|consen 110 QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM--GKHQRRGTQIAVTLEDY-VILCDCDN 180 (615)
T ss_pred HHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhh--cccccceeEEEecccce-eeecCcHH
Confidence 1111122222233789999999999999999999998877665443 32257899999998765 44555443
No 449
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.50 E-value=0.0054 Score=51.99 Aligned_cols=137 Identities=12% Similarity=0.124 Sum_probs=93.1
Q ss_pred CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEE-EccCCCcEEEEeCC
Q 019482 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRIMHWP 142 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~d~~ 142 (340)
.......|-|.+.-++.++.+..+..||-...... .. ...+....++|..++..++ .+-..+.+.+||+.
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~l-e~--------n~tg~aldm~wDkegdvlavlAek~~piylwd~n 105 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVIL-EL--------NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVN 105 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhhhhcceec-cc--------CCchhHhhhhhccccchhhhhhhcCCCeeechhh
Confidence 34456678888877888888888888885443221 11 1335667788888877554 45567899999997
Q ss_pred CCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCC
Q 019482 143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210 (340)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (340)
+....+-..+....-.-+.|++....++.+...+.+.|++..+.+.+... +.+...+.++++.+.+.
T Consensus 106 ~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~-Gkh~RRgtq~av~lEd~ 172 (615)
T KOG2247|consen 106 SEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM-GKHQRRGTQIAVTLEDY 172 (615)
T ss_pred hhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhh-cccccceeEEEecccce
Confidence 64433222233222233789998889999989999999998776554444 22445688888888876
No 450
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.36 E-value=2.7 Score=35.29 Aligned_cols=66 Identities=23% Similarity=0.290 Sum_probs=44.0
Q ss_pred CeeEEEEcCCCCeEEEEecC------CCEEEEEecCceeeeee-ccccC-------CCCCCCCCeEEEEEecCCCeEEEc
Q 019482 65 DPMTIAVNPSGDDFVCSTTN------GGCKLFEVYGGATDINL-LAKKM-------PPLQDAGPQKCLSFSVDGSRFAAG 130 (340)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d------~~i~iw~~~~~~~~~~~-~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~ 130 (340)
..-+|++.++|.++++.-.+ ..|..++.. ++....+ ..... ...+.+....+++++|+|+.|+++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 45578887788888877767 677777766 4443333 11111 233456788999999999966665
Q ss_pred c
Q 019482 131 G 131 (340)
Q Consensus 131 ~ 131 (340)
.
T Consensus 165 ~ 165 (326)
T PF13449_consen 165 M 165 (326)
T ss_pred E
Confidence 4
No 451
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.26 E-value=4 Score=37.75 Aligned_cols=156 Identities=10% Similarity=0.033 Sum_probs=87.3
Q ss_pred CCeEEEEecCCCEEEEEecCceeee------eecccc-CCC--------CCCCCCeEEEEEec--CCCeEEEccCCCcEE
Q 019482 75 GDDFVCSTTNGGCKLFEVYGGATDI------NLLAKK-MPP--------LQDAGPQKCLSFSV--DGSRFAAGGVDGHLR 137 (340)
Q Consensus 75 ~~~l~~~~~d~~i~iw~~~~~~~~~------~~~~~~-~~~--------~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~ 137 (340)
.++++.+. .+.|.||+++...... .+.... ... .+....|+.|.... +...|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 56666655 5669999987543311 111100 000 00112344444433 455888899999999
Q ss_pred EEeCCC-------C----ce--------eeccccCccceeEEEec--CCCCeEEEeeCCCeEEEEEccCC--eeEEEeec
Q 019482 138 IMHWPS-------L----RI--------ILDEPKAHKSVLDMDFS--LDSEFLATTSTDGSARIWKTEDG--VAWTFLTR 194 (340)
Q Consensus 138 ~~d~~~-------~----~~--------~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d~~v~iwd~~~~--~~~~~~~~ 194 (340)
+|.+++ . +. ..-.......+++++++ ...++||+++....|.||-.... +....-..
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence 997631 1 00 00011123468899998 77888888888888888766542 11111011
Q ss_pred CCCCceeeEEEccCCCcceE-EEEEecCCcceEEEEEC
Q 019482 195 NSDEKIELCRFSKDGTKPFL-FCTVQRGDKALLAVYDI 231 (340)
Q Consensus 195 ~~~~~v~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~ 231 (340)
.+...|.+++|-++.....- ..+++++-.|.+.+|++
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 23345889999876522110 12566677888888777
No 452
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.22 E-value=1.3 Score=31.12 Aligned_cols=118 Identities=10% Similarity=0.017 Sum_probs=70.3
Q ss_pred EEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-----CCCeEEEccCCCcEEEEeCC
Q 019482 68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-----DGSRFAAGGVDGHLRIMHWP 142 (340)
Q Consensus 68 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~~~d~~ 142 (340)
.-.|......|++++.-|+|.|++.................+.-...|++++-.+ +...|+.|+ ...+..||+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 3456666668888888899999987654322111111122223446777776544 344677766 4579999998
Q ss_pred CCceeeccccCccceeEEEecC----CCCeEEEeeCCCeEEEEEccCCee
Q 019482 143 SLRIILDEPKAHKSVLDMDFSL----DSEFLATTSTDGSARIWKTEDGVA 188 (340)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~d~~v~iwd~~~~~~ 188 (340)
....+. .+.-.+.+.++.+-. +..+++.|+ +..|.-||.+-.+.
T Consensus 82 ~N~d~F-yke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 82 NNSDLF-YKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEI 129 (136)
T ss_pred cCchhh-hhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEE
Confidence 776554 334446777777632 234455544 56777777654443
No 453
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.15 E-value=2.6 Score=34.31 Aligned_cols=203 Identities=11% Similarity=0.022 Sum_probs=113.1
Q ss_pred CeEEEEEecCCCeEEEccCCCcEEEEeCC------CC-ceeecccc-----CccceeEEEecCCCC------------eE
Q 019482 114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWP------SL-RIILDEPK-----AHKSVLDMDFSLDSE------------FL 169 (340)
Q Consensus 114 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~------~~-~~~~~~~~-----~~~~i~~~~~~~~~~------------~l 169 (340)
..+.|+++|.+.+-++....+...+||.. .. ..+..+.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45789999999888888888999999986 11 12223321 123566777764332 26
Q ss_pred EEeeCCCeEEEEEccCCee-----EEEeecCC-CCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEe--eee
Q 019482 170 ATTSTDGSARIWKTEDGVA-----WTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG--HKR 241 (340)
Q Consensus 170 ~~~~~d~~v~iwd~~~~~~-----~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~--~~~ 241 (340)
+.+++||+|.-|...-+.. ...+.... ......+++...+...+| .++.-..++|.+||-.-.+... .+.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~L--YaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYL--YAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceE--EEeccCCCceEEecCccccccCCCCcc
Confidence 7778899999998532222 12222111 222345666544322222 2444568889999865432210 011
Q ss_pred ccC-----CC-----------eeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEec------C
Q 019482 242 LLR-----KP-----------ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP------T 299 (340)
Q Consensus 242 ~~~-----~~-----------i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~------~ 299 (340)
... .+ |+-..-.++++.=+.|..-|.|-+||+.. +.++.+.....-..-+.++..| .
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeChhhhCCCC
Confidence 000 00 11111122222223334457899999854 4444332222234667888766 4
Q ss_pred CeEEEEEecCCcEEEEEecC
Q 019482 300 QRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 300 ~~~l~~~~~dg~i~iw~~~~ 319 (340)
|.+|+---.||+|..+|...
T Consensus 261 g~lLVGNFGDG~InaFD~~s 280 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQS 280 (336)
T ss_pred CCeEEeecCCceeEEecCCC
Confidence 67787777899999999763
No 454
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.07 E-value=3.1 Score=34.92 Aligned_cols=148 Identities=16% Similarity=0.162 Sum_probs=82.5
Q ss_pred CCCeeEEEEcCCCCeEEEEecCCC------EEEEEecCce-eeeee--------ccccCCCCC-CCCCeEEEEEecCCCe
Q 019482 63 EGDPMTIAVNPSGDDFVCSTTNGG------CKLFEVYGGA-TDINL--------LAKKMPPLQ-DAGPQKCLSFSVDGSR 126 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~------i~iw~~~~~~-~~~~~--------~~~~~~~~~-~~~~v~~~~~~~~~~~ 126 (340)
-+.+..+.+.|++..+++.+.+|. +..+++.... ..... .......+. ..--..++++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 355788999876667777777776 5555554310 00000 000000010 0113447888778888
Q ss_pred EEEccCC------CcEEEEeCCCCceeecc---------------ccCccceeEEEecCCCCeEEEeeC-----CC--e-
Q 019482 127 FAAGGVD------GHLRIMHWPSLRIILDE---------------PKAHKSVLDMDFSLDSEFLATTST-----DG--S- 177 (340)
Q Consensus 127 l~~~~~d------g~i~~~d~~~~~~~~~~---------------~~~~~~i~~~~~~~~~~~l~~~~~-----d~--~- 177 (340)
+++.-.+ ..|..++.. ++....+ ........+|+++|+|+.|+++.. |+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 7776666 678888865 4433222 112336889999999996665542 22 1
Q ss_pred ------EEEE--EccC-CeeEEEee--cC------CCCceeeEEEccCCCc
Q 019482 178 ------ARIW--KTED-GVAWTFLT--RN------SDEKIELCRFSKDGTK 211 (340)
Q Consensus 178 ------v~iw--d~~~-~~~~~~~~--~~------~~~~v~~~~~~~~~~~ 211 (340)
++++ |..+ ++....+. .. ....+..+.+.++++.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~l 228 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRL 228 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcE
Confidence 4554 4443 22222221 11 2356888999999984
No 455
>PHA02790 Kelch-like protein; Provisional
Probab=93.87 E-value=4.6 Score=36.09 Aligned_cols=184 Identities=9% Similarity=-0.004 Sum_probs=82.4
Q ss_pred CCCeEEEEecCC-----CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC--CcEEEEeCCCCce
Q 019482 74 SGDDFVCSTTNG-----GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--GHLRIMHWPSLRI 146 (340)
Q Consensus 74 ~~~~l~~~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~~~d~~~~~~ 146 (340)
++..++.|+.++ .+..||..++..... . +......-.+++ .-++...+.|+.+ ..+..||..+++-
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~--~----~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W 343 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPI--P----PMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAW 343 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEEC--C----CCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeE
Confidence 445566776543 466677766543211 1 011111111222 2367677777754 3577888765433
Q ss_pred ee--ccccCccceeEEEecCCCCeEEEeeCCC---eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecC
Q 019482 147 IL--DEPKAHKSVLDMDFSLDSEFLATTSTDG---SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG 221 (340)
Q Consensus 147 ~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 221 (340)
.. .+.........+ .-+|+..+.|+.++ .+..||.++.+=.. ...............-+++. .+.|
T Consensus 344 ~~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~-~~~m~~~r~~~~~~~~~~~I-----Yv~G- 414 (480)
T PHA02790 344 VNMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQF-GPSTYYPHYKSCALVFGRRL-----FLVG- 414 (480)
T ss_pred EECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEe-CCCCCCccccceEEEECCEE-----EEEC-
Confidence 22 121111111222 23577777777553 46778876543221 11111000111112234432 2233
Q ss_pred CcceEEEEECCCCc--EEeeeeccCCCeeEEEECCCCCEEEEeeCC-----CcEEEEeccCce
Q 019482 222 DKALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKME 277 (340)
Q Consensus 222 ~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~ 277 (340)
|...+||.++.+ .+..+.........+. -+|+..++|+.+ ..+..||..+.+
T Consensus 415 --G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 415 --RNAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred --CceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 246678876543 2222222122222222 366777777754 235566655544
No 456
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.76 E-value=3.7 Score=37.71 Aligned_cols=174 Identities=12% Similarity=0.126 Sum_probs=88.4
Q ss_pred CCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee---cCCCCceeeEEEccCC
Q 019482 133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT---RNSDEKIELCRFSKDG 209 (340)
Q Consensus 133 dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~ 209 (340)
.-.|+||++. |..+.+..-.+..+..+.|+.+. .|++...+|++++|++- |+.+.... ......|..+.+..+|
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCc
Confidence 3458888864 55555555555578889999765 46666789999999985 33322211 1122345556666565
Q ss_pred CcceEEEEEecCCcceE-EEEECCCCcEEeeeec-cCCCeeEEEE---CCCC--CEEEEee-CCCcEEEEeccC--ceEe
Q 019482 210 TKPFLFCTVQRGDKALL-AVYDISTWNKIGHKRL-LRKPASVLSI---SLDG--KYLAMGS-KDGDICVVDVKK--MEIN 279 (340)
Q Consensus 210 ~~~~~~~~~~~~~d~~i-~i~d~~~~~~~~~~~~-~~~~i~~~~~---s~~~--~~l~~~~-~dg~i~i~d~~~--~~~~ 279 (340)
- +.-..++.+ .+-+...... ..++. .......-+| .|.. ..++-.. ..+ ..++-... .+..
T Consensus 140 V-------avlt~~g~v~~i~~~~~~~~-~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~ 210 (829)
T KOG2280|consen 140 V-------AVLTVSGQVILINGVEEPKL-RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLH 210 (829)
T ss_pred e-------EEEecCCcEEEEcCCCcchh-hhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccccccc
Confidence 4 222223333 3333332211 11111 1111111222 2211 1111111 111 11222222 1222
Q ss_pred ecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 280 HWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 280 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
. +... .+.+..+..||+.++|+--..+|.+.+-+.+...
T Consensus 211 ~-~~~~--~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 211 A-LSWP--NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQ 249 (829)
T ss_pred c-cCCC--CceEEEEEEcCCcceEEEEecCCcEEEEecchhh
Confidence 1 1122 2578889999999999999999988887776544
No 457
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.53 E-value=0.07 Score=49.09 Aligned_cols=150 Identities=15% Similarity=0.146 Sum_probs=83.3
Q ss_pred CCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC--CcE-----EeeeeccCCCe
Q 019482 175 DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST--WNK-----IGHKRLLRKPA 247 (340)
Q Consensus 175 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--~~~-----~~~~~~~~~~i 247 (340)
.+-+++-+......-..+.....+.+..++|-...-- - +. ..-|.+.+||++- |+. +........++
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~p-k---~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~ 183 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCP-K---GR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDP 183 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCCh-H---HH--HHhhhhheeehHhhccccccceEEeecCcCCCCc
Confidence 3456666554332212233334455666776432110 0 11 2235678888763 332 12222233455
Q ss_pred eEEEECC---CCCEEEEeeCCCcEEEEeccCceEeeccccccccccee-----------eEEEecCCeEEEEEecCCcEE
Q 019482 248 SVLSISL---DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA-----------LVEFCPTQRVVLTASKEWGAM 313 (340)
Q Consensus 248 ~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~-----------~~~~~~~~~~l~~~~~dg~i~ 313 (340)
.-+.|.| +.-++..+-.++.+++........ .+...| +..+. --..||||..++.+..||.++
T Consensus 184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsH-s~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~ 260 (1283)
T KOG1916|consen 184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSH-SQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVG 260 (1283)
T ss_pred ceeeecccccccceeeeccCCCceeEeeechHHH--HHHHhc-CCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccc
Confidence 6667766 567788888888888877655332 222234 22222 223799999999999999999
Q ss_pred EEEecCCCC--CCCCccccccc
Q 019482 314 ITKLTVPAD--WKGLSLPLLHS 333 (340)
Q Consensus 314 iw~~~~~~~--~~~~~~~~~h~ 333 (340)
.|.+-..+. ...+..++.|.
T Consensus 261 f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 261 FYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeeeeeeccccHhhhhccCCCC
Confidence 998876543 12334444444
No 458
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.49 E-value=3.7 Score=36.05 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=16.2
Q ss_pred eeeEEEccCCCcceEEEEEecCCcceEEEEE
Q 019482 200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYD 230 (340)
Q Consensus 200 v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d 230 (340)
|..+..++.|.. ++..+.+|.+.++=
T Consensus 106 V~~vl~s~~GS~-----VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 106 VYQVLLSPTGSH-----VALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEecCCCce-----EEEecCCeeEEEEc
Confidence 556677788876 45556666555443
No 459
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.44 E-value=1.5 Score=32.91 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=24.8
Q ss_pred ceeEEEecCCC------CeEEEeeCCCeEEEEEccC
Q 019482 156 SVLDMDFSLDS------EFLATTSTDGSARIWKTED 185 (340)
Q Consensus 156 ~i~~~~~~~~~------~~l~~~~~d~~v~iwd~~~ 185 (340)
.+..++|||.| ..|++.+.++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78999999954 3688888999999998764
No 460
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=93.25 E-value=5.4 Score=35.03 Aligned_cols=111 Identities=13% Similarity=0.119 Sum_probs=60.6
Q ss_pred cceeEEEecCCCCeEEEeeCCCeEEEEEccCCee--EEEee----cCCCCceeeEEEccCC----CcceEEEEEecC---
Q 019482 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA--WTFLT----RNSDEKIELCRFSKDG----TKPFLFCTVQRG--- 221 (340)
Q Consensus 155 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~----~~~~~~v~~~~~~~~~----~~~~~~~~~~~~--- 221 (340)
.....|+|.||+++|++--..|.|++++..++.. +..+. ....+....++++|+- ...+++...+..
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~ 109 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD 109 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence 3568899999998777654469999998655432 21111 1124568899999884 211222222111
Q ss_pred ----CcceEEEEECCCC--c---EEeeeecc----CCCeeEEEECCCCCEEEEeeCC
Q 019482 222 ----DKALLAVYDISTW--N---KIGHKRLL----RKPASVLSISLDGKYLAMGSKD 265 (340)
Q Consensus 222 ----~d~~i~i~d~~~~--~---~~~~~~~~----~~~i~~~~~s~~~~~l~~~~~d 265 (340)
....|.-|.+... . ....+... .+.-..+.|.|||.+.++.++.
T Consensus 110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1234555554321 1 11112111 1334678899999877655443
No 461
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.12 E-value=1 Score=33.71 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=25.2
Q ss_pred CCeeEEEECCCC------CEEEEeeCCCcEEEEeccC
Q 019482 245 KPASVLSISLDG------KYLAMGSKDGDICVVDVKK 275 (340)
Q Consensus 245 ~~i~~~~~s~~~------~~l~~~~~dg~i~i~d~~~ 275 (340)
..+..++|||.| -+|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378899999953 4688889999999998764
No 462
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.79 E-value=0.78 Score=39.24 Aligned_cols=166 Identities=11% Similarity=0.033 Sum_probs=92.8
Q ss_pred cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeE-EEEEecCCCeEEEccCCCcEEEE
Q 019482 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK-CLSFSVDGSRFAAGGVDGHLRIM 139 (340)
Q Consensus 61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~~ 139 (340)
.-..+|..+-..|||+.+..-+. .++.++++.+.....+......+ -+....|. .+..-..|.-+++++.||.|.-|
T Consensus 218 ~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dsp-g~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQW 295 (733)
T COG4590 218 VPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSP-GDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQW 295 (733)
T ss_pred CCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCC-CchHHHHHHHHHHHhCceeEEEEcCCCceeee
Confidence 33456778888999998877666 55889988765543222211100 00001122 12222345567788889988877
Q ss_pred -eCCCCcee-----eccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcce
Q 019482 140 -HWPSLRII-----LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213 (340)
Q Consensus 140 -d~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (340)
|++.+... +.+.-...++..+.-..+.+-+++-+..|++.++.....+.+..-. .. ..+.-+++||.+.+
T Consensus 296 Fdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~-~~~~~~~~Sp~~~~-- 371 (733)
T COG4590 296 FDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AY-QAPQLVAMSPNQAY-- 371 (733)
T ss_pred eeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hh-cCcceeeeCcccch--
Confidence 54433221 1111111233322222233457777888888888755444332221 22 25778999999986
Q ss_pred EEEEEecCCcceEEEEECCCCcE
Q 019482 214 LFCTVQRGDKALLAVYDISTWNK 236 (340)
Q Consensus 214 ~~~~~~~~~d~~i~i~d~~~~~~ 236 (340)
+..-+.+.|+++.+++..+
T Consensus 372 ----Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 372 ----LLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred ----heeecCCceEEEEecCCCC
Confidence 3335567899988877554
No 463
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.69 E-value=5.7 Score=36.66 Aligned_cols=68 Identities=21% Similarity=0.306 Sum_probs=43.2
Q ss_pred CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEe
Q 019482 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH 140 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d 140 (340)
...++++.-+|.|..++.+..||.|.+|+....+...... ...+-..+.|...| |+++..|..+.-|.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~--------~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE--------EAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh--------hcCCccceeeeccc--eEEEeccchhheee
Confidence 3457788889999999999999999999987654321111 11233445555444 44444555555554
No 464
>PHA02790 Kelch-like protein; Provisional
Probab=92.64 E-value=7.2 Score=34.86 Aligned_cols=172 Identities=7% Similarity=-0.067 Sum_probs=78.2
Q ss_pred CCCeEEEccCCC-----cEEEEeCCCCceeec--cccCccceeEEEecCCCCeEEEeeCC--CeEEEEEccCCeeEEEee
Q 019482 123 DGSRFAAGGVDG-----HLRIMHWPSLRIILD--EPKAHKSVLDMDFSLDSEFLATTSTD--GSARIWKTEDGVAWTFLT 193 (340)
Q Consensus 123 ~~~~l~~~~~dg-----~i~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d--~~v~iwd~~~~~~~~~~~ 193 (340)
++..+++|+.++ .+..||..+++.... ......... ++ .-++...+.|+.+ .++..||..+++-. .+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~-~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~-~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYAS-GV-PANNKLYVVGGLPNPTSVERWFHGDAAWV-NMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcce-EE-EECCEEEEECCcCCCCceEEEECCCCeEE-ECC
Confidence 455566776542 467788776553321 111111122 22 2367777777754 35778887654321 111
Q ss_pred cCCCCceeeEEEccCCCcceEEEEEecCCc---ceEEEEECCCCc--EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcE
Q 019482 194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDK---ALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDI 268 (340)
Q Consensus 194 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d---~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 268 (340)
.-...........-+|+. .+.||.+ ..+..||.++.+ .+..+....... ++ ..-+++..+.|+ .+
T Consensus 348 ~l~~~r~~~~~~~~~g~I-----YviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~GG---~~ 417 (480)
T PHA02790 348 SLLKPRCNPAVASINNVI-----YVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVGR---NA 417 (480)
T ss_pred CCCCCCcccEEEEECCEE-----EEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEECC---ce
Confidence 111111111111223432 2333332 456788877643 211111111111 11 223566666663 47
Q ss_pred EEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC
Q 019482 269 CVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE 309 (340)
Q Consensus 269 ~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 309 (340)
.+||.++.+-........ ...-.+++ .-+|+..+.||.+
T Consensus 418 e~ydp~~~~W~~~~~m~~-~r~~~~~~-v~~~~IYviGG~~ 456 (480)
T PHA02790 418 EFYCESSNTWTLIDDPIY-PRDNPELI-IVDNKLLLIGGFY 456 (480)
T ss_pred EEecCCCCcEeEcCCCCC-CccccEEE-EECCEEEEECCcC
Confidence 789987765433221111 11111222 3467888888865
No 465
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=92.44 E-value=7.4 Score=36.22 Aligned_cols=91 Identities=18% Similarity=0.166 Sum_probs=52.0
Q ss_pred eEEEecCCCCeEEEeeCCC-----eEEEEEccCCeeEEE--eecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEE
Q 019482 158 LDMDFSLDSEFLATTSTDG-----SARIWKTEDGVAWTF--LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD 230 (340)
Q Consensus 158 ~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d 230 (340)
..+.|-|+|..+++-..|| .|..+.. +|-.-.. +....++.+...+|+-... +......+.+.+|-
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~------vlav~~~n~~~lwt 322 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLST------VLAVAEGNLLKLWT 322 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHH------HHHHhhcceEEEEE
Confidence 4588999999999877554 3555542 2211111 1122334566677776655 34555677899998
Q ss_pred CCCCcEEeeeeccCCCeeEEEECCC
Q 019482 231 ISTWNKIGHKRLLRKPASVLSISLD 255 (340)
Q Consensus 231 ~~~~~~~~~~~~~~~~i~~~~~s~~ 255 (340)
..+-.-.......-..+.-+.|+|.
T Consensus 323 tkNyhWYLK~e~~ip~~s~vkwhpe 347 (1243)
T COG5290 323 TKNYHWYLKVERQIPGISYVKWHPE 347 (1243)
T ss_pred ccceEEEEEEeecCCCcceeeeccc
Confidence 7764422222222234566788884
No 466
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=92.14 E-value=1.2 Score=40.45 Aligned_cols=72 Identities=22% Similarity=0.246 Sum_probs=44.7
Q ss_pred cCCCeEEEccCCCcEEEEeCCC----Cceeec--------------ccc--------CccceeEEEecC----CCCeEEE
Q 019482 122 VDGSRFAAGGVDGHLRIMHWPS----LRIILD--------------EPK--------AHKSVLDMDFSL----DSEFLAT 171 (340)
Q Consensus 122 ~~~~~l~~~~~dg~i~~~d~~~----~~~~~~--------------~~~--------~~~~i~~~~~~~----~~~~l~~ 171 (340)
++...++.+..||.+....... +..... +.. .......+++++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3666888888999888877654 111100 000 012345566665 6778999
Q ss_pred eeCCCeEEEEEccCCeeEEEee
Q 019482 172 TSTDGSARIWKTEDGVAWTFLT 193 (340)
Q Consensus 172 ~~~d~~v~iwd~~~~~~~~~~~ 193 (340)
.+.|+++|+||+.+++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999976653
No 467
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=92.06 E-value=12 Score=36.07 Aligned_cols=92 Identities=10% Similarity=0.066 Sum_probs=48.8
Q ss_pred ceEEEEECC-CCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeE
Q 019482 224 ALLAVYDIS-TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRV 302 (340)
Q Consensus 224 ~~i~i~d~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 302 (340)
+.++.|++- .++.+..+....-+-.-.+..|-..++++| ....+++||+...++++.....+....|.++.+. +..
T Consensus 912 g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~R 988 (1205)
T KOG1898|consen 912 GFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GAR 988 (1205)
T ss_pred CceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceE
Confidence 446666643 334322222222222335666766666665 4568999999887776655433333456666553 344
Q ss_pred EEEEecCCcEEEEEec
Q 019482 303 VLTASKEWGAMITKLT 318 (340)
Q Consensus 303 l~~~~~dg~i~iw~~~ 318 (340)
++.|..--.+..+.++
T Consensus 989 I~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen 989 IVVGDIQESVHFVRYR 1004 (1205)
T ss_pred EEEeeccceEEEEEEe
Confidence 5555444445544444
No 468
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.95 E-value=0.84 Score=24.47 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=23.7
Q ss_pred CCCCEEEEee-CCCcEEEEeccCceEeecccc
Q 019482 254 LDGKYLAMGS-KDGDICVVDVKKMEINHWSKR 284 (340)
Q Consensus 254 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~ 284 (340)
|++++|+++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 6777777765 478999999988887776544
No 469
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.95 E-value=1.1 Score=38.40 Aligned_cols=161 Identities=12% Similarity=0.093 Sum_probs=93.1
Q ss_pred cCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEE-EeecCCCC----cee-eEEEccCCCcceEEEEEecCCcce
Q 019482 152 KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT-FLTRNSDE----KIE-LCRFSKDGTKPFLFCTVQRGDKAL 225 (340)
Q Consensus 152 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~~----~v~-~~~~~~~~~~~~~~~~~~~~~d~~ 225 (340)
.....+..+-..|||+.+..-+. ..+.++++.+..... .+.....+ .|+ .+..-..|.. ++....||.
T Consensus 218 ~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~S-----LLv~~~dG~ 291 (733)
T COG4590 218 VPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFS-----LLVVHEDGL 291 (733)
T ss_pred CCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCcee-----EEEEcCCCc
Confidence 33456778889999998877664 678888886543321 11111111 121 1111222332 566777777
Q ss_pred EEEE-ECCCCc-----EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecC
Q 019482 226 LAVY-DISTWN-----KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (340)
Q Consensus 226 i~i~-d~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~ 299 (340)
|.-| |.+.+. .++.++....++..+.-..+.+-+++-...|.+.++.....+.+... .. -..+.-+++||.
T Consensus 292 vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~-~~--~~~~~~~~~Sp~ 368 (733)
T COG4590 292 VSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE-RA--YQAPQLVAMSPN 368 (733)
T ss_pred eeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh-hh--hcCcceeeeCcc
Confidence 7665 444332 12222222234443333334566777788898888876555444322 11 235777899999
Q ss_pred CeEEEEEecCCcEEEEEecCCCC
Q 019482 300 QRVVLTASKEWGAMITKLTVPAD 322 (340)
Q Consensus 300 ~~~l~~~~~dg~i~iw~~~~~~~ 322 (340)
+.++++- +.|+++++.++.+..
T Consensus 369 ~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 369 QAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred cchheee-cCCceEEEEecCCCC
Confidence 9988876 457899999987653
No 470
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.92 E-value=4.7 Score=31.09 Aligned_cols=112 Identities=10% Similarity=0.143 Sum_probs=63.6
Q ss_pred eeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC---C---cEEEE
Q 019482 66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---G---HLRIM 139 (340)
Q Consensus 66 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g---~i~~~ 139 (340)
+..++-.+. +.|+.+.....|.+|++......... .+..-+.|..+.++..|+||++--.+ . .+|+|
T Consensus 20 P~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~------~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 20 PTAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLC------TFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred cceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeE------EEcchhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 334444332 44544455567999999843322111 12244789999999999999986432 2 56665
Q ss_pred -eCCC----Cceee-cc---------------------ccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCC
Q 019482 140 -HWPS----LRIIL-DE---------------------PKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDG 186 (340)
Q Consensus 140 -d~~~----~~~~~-~~---------------------~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~ 186 (340)
|.+. ...+. ++ .....++.+++..| .|+ |+.|+ ++++.+|.+...
T Consensus 93 ~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 93 FNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEEE
Confidence 2211 11111 11 11233567888888 455 55554 578999988643
No 471
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=91.40 E-value=1.1 Score=23.65 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=19.3
Q ss_pred cCCCeeEEEECCCCCEEEEeeC-C--CcEEEE
Q 019482 243 LRKPASVLSISLDGKYLAMGSK-D--GDICVV 271 (340)
Q Consensus 243 ~~~~i~~~~~s~~~~~l~~~~~-d--g~i~i~ 271 (340)
.........|||||+.|+..+. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3446678899999998887654 3 555554
No 472
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.12 E-value=14 Score=34.88 Aligned_cols=74 Identities=15% Similarity=0.179 Sum_probs=51.4
Q ss_pred CCeEEEEEecCCCeEEEccCCCcEEEEeCCC----------Cce--e-ec-------c-ccCccceeEEEecCC---CCe
Q 019482 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS----------LRI--I-LD-------E-PKAHKSVLDMDFSLD---SEF 168 (340)
Q Consensus 113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------~~~--~-~~-------~-~~~~~~i~~~~~~~~---~~~ 168 (340)
-.|..+.++|+|++++..+..| |.|..+.. ++. . .. + ......|..+.|+|. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4688899999999999888765 55554432 111 0 00 1 112237889999996 478
Q ss_pred EEEeeCCCeEEEEEccCCe
Q 019482 169 LATTSTDGSARIWKTEDGV 187 (340)
Q Consensus 169 l~~~~~d~~v~iwd~~~~~ 187 (340)
|+.-..|+++|+||+...+
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 8888899999999997543
No 473
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.94 E-value=7.2 Score=31.37 Aligned_cols=198 Identities=11% Similarity=0.024 Sum_probs=123.6
Q ss_pred CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC
Q 019482 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS 143 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 143 (340)
.....++-.|||..-+++...+.|--.|..+++....-+. .......+..-|||..-++-+.. -|.-.|-++
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg-------~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt 133 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLG-------SGASPHGIVVGPDGSAWITDTGL-AIGRLDPKT 133 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecC-------CCCCCceEEECCCCCeeEecCcc-eeEEecCcc
Confidence 4567788899999888888888888888888876544433 33455678888888766654333 455556555
Q ss_pred Cceeec-c--ccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEec
Q 019482 144 LRIILD-E--PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR 220 (340)
Q Consensus 144 ~~~~~~-~--~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 220 (340)
.+...- + ...........|.+.|++-+++.. |.---.|.. ...+..+........+.++..|+|.. -++.
T Consensus 134 ~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsv-----wyas 206 (353)
T COG4257 134 LEVTRFPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSV-----WYAS 206 (353)
T ss_pred cceEEeecccccCCCcccceeeCCCccEEEeecc-ccceecCcc-cCceeeeccCCCCCCcceEECCCCcE-----EEEe
Confidence 543221 1 112236788899999998888752 211111211 12233333334445778899999985 3444
Q ss_pred CCcceEEEEECCCCcEEeeeecc---CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce
Q 019482 221 GDKALLAVYDISTWNKIGHKRLL---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKME 277 (340)
Q Consensus 221 ~~d~~i~i~d~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 277 (340)
-.++.|...|...+... .+... ......+--+|.|+.-++....+.+..||.....
T Consensus 207 lagnaiaridp~~~~ae-v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 207 LAGNAIARIDPFAGHAE-VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred ccccceEEcccccCCcc-eecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence 45666777777766432 22211 2234555567888888887778888888876644
No 474
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=90.83 E-value=13 Score=34.20 Aligned_cols=163 Identities=16% Similarity=0.153 Sum_probs=86.0
Q ss_pred ccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee--EEEeecCCCC-ceeeEEEccCCC----cceEEEEEe-cCCcce
Q 019482 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDE-KIELCRFSKDGT----KPFLFCTVQ-RGDKAL 225 (340)
Q Consensus 154 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~~-~v~~~~~~~~~~----~~~~~~~~~-~~~d~~ 225 (340)
.+.|-.+.|.++++.+++.-.+|.|.+||...+.. +..+...+.. .+++ .|-++.. ..+++.+.. .+..-.
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcEE
Confidence 45788999999999999999999999999933222 1122222222 1222 3333322 223322222 344566
Q ss_pred EEEEECC-CCcEEeeee---ccCCCeeEEEECC-CCCEEEEeeCCCcEEEEeccCceEeeccccccc--c--cceeeEEE
Q 019482 226 LAVYDIS-TWNKIGHKR---LLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL--G--TSIALVEF 296 (340)
Q Consensus 226 i~i~d~~-~~~~~~~~~---~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~--~~i~~~~~ 296 (340)
.+++.+. ....+.++. .+........|+- +|++... .++.|.+|++...+..+.+...+. . ..+.++.-
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~ 285 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKP 285 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeec
Confidence 7788871 122222222 1222222223332 4544433 677899999988776655433210 1 12333322
Q ss_pred ecCCeEEEEEecCCcEEEEEecCCC
Q 019482 297 CPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 297 ~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
-...+.|++. ++.|++.++....
T Consensus 286 ~s~nRvLLs~--~nkIyLld~~~~s 308 (670)
T PF10395_consen 286 PSPNRVLLSV--NNKIYLLDLKFES 308 (670)
T ss_pred CCCCeEEEEc--CCEEEEEeehhhh
Confidence 1133555554 5679999987554
No 475
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.81 E-value=1.6 Score=39.67 Aligned_cols=76 Identities=17% Similarity=0.155 Sum_probs=43.8
Q ss_pred CCCCeEEEEecCCCEEEEEecC----ceeeeee-cccc-----CC---------CCCCCCCeEEEEEec----CCCeEEE
Q 019482 73 PSGDDFVCSTTNGGCKLFEVYG----GATDINL-LAKK-----MP---------PLQDAGPQKCLSFSV----DGSRFAA 129 (340)
Q Consensus 73 ~~~~~l~~~~~d~~i~iw~~~~----~~~~~~~-~~~~-----~~---------~~~~~~~v~~~~~~~----~~~~l~~ 129 (340)
++...++.+..||.+....... +...... .... .. .......+..++.++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667888888999888887764 1111110 0000 00 001224456666666 6779999
Q ss_pred ccCCCcEEEEeCCCCceee
Q 019482 130 GGVDGHLRIMHWPSLRIIL 148 (340)
Q Consensus 130 ~~~dg~i~~~d~~~~~~~~ 148 (340)
.+.|+++|+||+.+++++.
T Consensus 236 l~~D~~LRiW~l~t~~~~~ 254 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLA 254 (547)
T ss_dssp EETTSEEEEEETTTTCEEE
T ss_pred EeCCCeEEEEECCCCeEEE
Confidence 9999999999999998844
No 476
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.81 E-value=4 Score=40.00 Aligned_cols=136 Identities=14% Similarity=0.171 Sum_probs=82.1
Q ss_pred CCCcEEEEeCCCCceeeccccCccceeEEE--------ecCCCCeEEEeeCCCeEEEEEccCCeeE-------EEeec-C
Q 019482 132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMD--------FSLDSEFLATTSTDGSARIWKTEDGVAW-------TFLTR-N 195 (340)
Q Consensus 132 ~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~l~~~~~d~~v~iwd~~~~~~~-------~~~~~-~ 195 (340)
-|..+.+|+.+++.....+.+....|..+. |.|.=++++.-+.--.|.++-+.-.+.. ..+.- -
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~ 176 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV 176 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence 478899999998766665555544555443 2332234443333455666654321110 11111 1
Q ss_pred CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC----CC------cE--------------Eeeee-ccCCCeeEE
Q 019482 196 SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS----TW------NK--------------IGHKR-LLRKPASVL 250 (340)
Q Consensus 196 ~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~----~~------~~--------------~~~~~-~~~~~i~~~ 250 (340)
.+..|.++....+|+ ++.+|.|+. +|.+. .+ +. +..+. .+..+|..+
T Consensus 177 dg~~V~~I~~t~nGR------IF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi 248 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGR------IFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQI 248 (1311)
T ss_pred CCceEEEEEeccCCc------EEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceee
Confidence 234688888888888 566777774 44431 10 00 11122 345689999
Q ss_pred EECCCCCEEEEeeCCCcEEEEeccC
Q 019482 251 SISLDGKYLAMGSKDGDICVVDVKK 275 (340)
Q Consensus 251 ~~s~~~~~l~~~~~dg~i~i~d~~~ 275 (340)
+.......+.+-++.|.|.+||+..
T Consensus 249 ~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 249 TIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred EeccccceeeeeccCceEEEEEccC
Confidence 9988888999999999999999976
No 477
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=90.64 E-value=17 Score=35.15 Aligned_cols=174 Identities=17% Similarity=0.192 Sum_probs=93.3
Q ss_pred cEEEEeCCCCceeeccccCcc----ceeEEEecCCCC--eEEEee-----------CCCeEEEEEcc-CCeeEEEeecCC
Q 019482 135 HLRIMHWPSLRIILDEPKAHK----SVLDMDFSLDSE--FLATTS-----------TDGSARIWKTE-DGVAWTFLTRNS 196 (340)
Q Consensus 135 ~i~~~d~~~~~~~~~~~~~~~----~i~~~~~~~~~~--~l~~~~-----------~d~~v~iwd~~-~~~~~~~~~~~~ 196 (340)
.|++.|..+++.+..+....+ .+..+.|+.... +++++. .+|.++.|++- .++.+. +....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~le-llh~T 932 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLE-LLHKT 932 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceee-eeecc
Confidence 478888777765544332222 466677765332 344433 23457777653 344222 22111
Q ss_pred CCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec--cCCCeeEEEECCCCCEEEEeeCCCcEEEEec-
Q 019482 197 DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL--LRKPASVLSISLDGKYLAMGSKDGDICVVDV- 273 (340)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~- 273 (340)
.-+-.-.+..|-..+ +.++....+++||+.+.+.++.... ....|+.+.+ .+..+++|...-.+.++-.
T Consensus 933 ~~~~~v~Ai~~f~~~------~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen 933 EIPGPVGAICPFQGR------VLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYR 1004 (1205)
T ss_pred CCCccceEEeccCCE------EEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEe
Confidence 111223455666653 4445677899999988776544332 2344555555 5667888876666665444
Q ss_pred -cCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 274 -KKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 274 -~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
...+.+... .......|+.+.+- |...+|.+..=|.+ |-++.|.
T Consensus 1005 ~~~n~l~~fa-dD~~pR~Vt~~~~l-D~~tvagaDrfGNi--~~vR~P~ 1049 (1205)
T KOG1898|consen 1005 REDNQLIVFA-DDPVPRHVTALELL-DYDTVAGADRFGNI--AVVRIPP 1049 (1205)
T ss_pred cCCCeEEEEe-CCCccceeeEEEEe-cCCceeeccccCcE--EEEECCC
Confidence 344444332 22223466776665 44557777665655 4444444
No 478
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=90.03 E-value=3.7 Score=37.07 Aligned_cols=82 Identities=11% Similarity=0.076 Sum_probs=51.0
Q ss_pred EeeeeccCCCeeEEEECCCCCEEEEeeCCCcE-EEEecc---Cce------EeecccccccccceeeEEEecCCeEEEEE
Q 019482 237 IGHKRLLRKPASVLSISLDGKYLAMGSKDGDI-CVVDVK---KME------INHWSKRLHLGTSIALVEFCPTQRVVLTA 306 (340)
Q Consensus 237 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i-~i~d~~---~~~------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 306 (340)
++.+-.|......+.|+|+++.+.++...+.. .++-+. ... -+..+..+.....+..++|+.|.++++..
T Consensus 485 vqh~vahs~~gv~~Ef~~~~~l~lSad~~e~ef~~f~V~Ph~~wsslaav~hly~l~rG~TsaKv~~~afs~dsrw~A~~ 564 (788)
T KOG2109|consen 485 VQHYVAHSDPGVYIEFSPDQRLVLSADANENEFNIFLVMPHATWSSLAAVQHLYKLNRGSTSAKVVSTAFSEDSRWLAIT 564 (788)
T ss_pred eEEEeeccCccceeeecccccceecccccccccceEEeecccccHHHhhhhhhhhccCCCccceeeeeEeecchhhhhhh
Confidence 34455566678889999999999988765543 333322 211 12222223333468889999999888776
Q ss_pred ecCCcEEEEEec
Q 019482 307 SKEWGAMITKLT 318 (340)
Q Consensus 307 ~~dg~i~iw~~~ 318 (340)
..-++-.|+...
T Consensus 565 t~~~TthVfk~h 576 (788)
T KOG2109|consen 565 TNHATTHVFKVH 576 (788)
T ss_pred hcCCceeeeeec
Confidence 665665565543
No 479
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.00 E-value=10 Score=31.73 Aligned_cols=64 Identities=6% Similarity=0.050 Sum_probs=32.3
Q ss_pred CCCeEEEccCC-----CcEEEEeCCCCcee---eccccCccce--eEEEecCCCCeEEEeeC-----CCeEEEEEccCCe
Q 019482 123 DGSRFAAGGVD-----GHLRIMHWPSLRII---LDEPKAHKSV--LDMDFSLDSEFLATTST-----DGSARIWKTEDGV 187 (340)
Q Consensus 123 ~~~~l~~~~~d-----g~i~~~d~~~~~~~---~~~~~~~~~i--~~~~~~~~~~~l~~~~~-----d~~v~iwd~~~~~ 187 (340)
++..++.|+.+ ..+..+|+.+.+.. ........+. .+++. -++++.+.|+. ...+..||+++.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45566667654 34667777665421 1111111111 12222 24666666664 2468888887653
No 480
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=89.82 E-value=10 Score=31.25 Aligned_cols=143 Identities=13% Similarity=0.025 Sum_probs=0.0
Q ss_pred eEEEEEccCCeeEEEeecC-----CCCceeeEEEcc-CCCcceEEEEEecCCcceEEEEECCCCcEEeeeecc-------
Q 019482 177 SARIWKTEDGVAWTFLTRN-----SDEKIELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL------- 243 (340)
Q Consensus 177 ~v~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~------- 243 (340)
+|.+||+++++.++++... ....+..+.+.. ++..---++.++-...+-|.++|+.+++.-+....+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Q ss_pred ------------CCCeeEEEECC---CCCEEEEeeCCCcEEEEeccCceEeeccccccc------------ccceeeEEE
Q 019482 244 ------------RKPASVLSISL---DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL------------GTSIALVEF 296 (340)
Q Consensus 244 ------------~~~i~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------------~~~i~~~~~ 296 (340)
...+..++.+| +++.|+.....+ -++|.+++............ ......++.
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Q ss_pred ecCCeEEEEEecCCcEEEEEecCC
Q 019482 297 CPTQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 297 ~~~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
+++|.++++--..+.|..|+...+
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~~ 217 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDGP 217 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTTS
T ss_pred CCCCcEEEecCCCCeEEEEeCCCC
No 481
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=89.79 E-value=4 Score=26.59 Aligned_cols=53 Identities=21% Similarity=0.127 Sum_probs=33.8
Q ss_pred eeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 262 GSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 262 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
+..+|.+.-||..+++....+... .-.+.+++++|+.+++.+- -+.-+|+.+-
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L---~fpNGVals~d~~~vlv~E-t~~~Ri~ryw 85 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGL---YFPNGVALSPDESFVLVAE-TGRYRILRYW 85 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEE---SSEEEEEE-TTSSEEEEEE-GGGTEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCC---CccCeEEEcCCCCEEEEEe-ccCceEEEEE
Confidence 345688999999998865544332 3578999999999777663 3444555543
No 482
>PLN02193 nitrile-specifier protein
Probab=89.77 E-value=14 Score=32.92 Aligned_cols=148 Identities=10% Similarity=0.058 Sum_probs=69.2
Q ss_pred CCCeEEEccCC-----CcEEEEeCCCCceeecccc---Cc-cceeEEEecCCCCeEEEeeCCC-----eEEEEEccCCee
Q 019482 123 DGSRFAAGGVD-----GHLRIMHWPSLRIILDEPK---AH-KSVLDMDFSLDSEFLATTSTDG-----SARIWKTEDGVA 188 (340)
Q Consensus 123 ~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~---~~-~~i~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~~~ 188 (340)
++++.+.|+.+ ..+..||+.+.+-...... .. ..-.++. .-++++++.|+.++ .+..||+.+.+-
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 45566666654 3588889877553321111 11 1111222 22466777776543 467788766542
Q ss_pred EEEeecC---CCCce-eeEEEccCCCcceEEEEEecCCc----ceEEEEECCCCcEEeeeec---c-CCCeeEEEECCCC
Q 019482 189 WTFLTRN---SDEKI-ELCRFSKDGTKPFLFCTVQRGDK----ALLAVYDISTWNKIGHKRL---L-RKPASVLSISLDG 256 (340)
Q Consensus 189 ~~~~~~~---~~~~v-~~~~~~~~~~~~~~~~~~~~~~d----~~i~i~d~~~~~~~~~~~~---~-~~~i~~~~~s~~~ 256 (340)
. .+... ..... ..+. .-+++. .+.++.+ ..+.+||+.+.+=...... . .....++ ..-++
T Consensus 307 ~-~~~~~~~~~~~R~~~~~~-~~~gki-----yviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~ 378 (470)
T PLN02193 307 F-HCSTPGDSFSIRGGAGLE-VVQGKV-----WVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGK 378 (470)
T ss_pred E-eCCCCCCCCCCCCCcEEE-EECCcE-----EEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECC
Confidence 2 11110 00000 1111 123442 2222322 5688999887542211110 1 1111122 22356
Q ss_pred CEEEEeeCC--------------CcEEEEeccCceEe
Q 019482 257 KYLAMGSKD--------------GDICVVDVKKMEIN 279 (340)
Q Consensus 257 ~~l~~~~~d--------------g~i~i~d~~~~~~~ 279 (340)
++++.|+.+ +.+.+||+.+.+-.
T Consensus 379 ~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 379 HIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred EEEEECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence 777777753 24788998876544
No 483
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=89.52 E-value=20 Score=34.23 Aligned_cols=69 Identities=16% Similarity=0.076 Sum_probs=50.8
Q ss_pred CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecc----cccc-------------cccceeeEEEecCCeEEEEEe
Q 019482 245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS----KRLH-------------LGTSIALVEFCPTQRVVLTAS 307 (340)
Q Consensus 245 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~-------------~~~~i~~~~~~~~~~~l~~~~ 307 (340)
..|.++....-+.+++..-.||+|.++|..+.+.+... .... ...++..++|||.+..++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 45777777777889999999999999998886554333 1100 011344688999999999999
Q ss_pred cCCcEE
Q 019482 308 KEWGAM 313 (340)
Q Consensus 308 ~dg~i~ 313 (340)
.+|.+.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 999977
No 484
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.48 E-value=5.8 Score=28.02 Aligned_cols=114 Identities=18% Similarity=0.168 Sum_probs=68.0
Q ss_pred EEEecCCCCeEEEeeCCCeEEEEEccCC--------eeEEEeecCCCCceeeEEEcc---CCCcceEEEEEecCCcceEE
Q 019482 159 DMDFSLDSEFLATTSTDGSARIWKTEDG--------VAWTFLTRNSDEKIELCRFSK---DGTKPFLFCTVQRGDKALLA 227 (340)
Q Consensus 159 ~~~~~~~~~~l~~~~~d~~v~iwd~~~~--------~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~d~~i~ 227 (340)
.-.|......|+.++.-++|.|++.... ..+..+. ....|++++-.+ +..+- ++.-+....+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D----~LliGt~t~ll 76 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRD----CLLIGTQTSLL 76 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcC----EEEEeccceEE
Confidence 3456666667888888899999987633 2334443 233567665433 33332 23334567799
Q ss_pred EEECCCCcEEeeeeccCCCeeEEEECC---CCCEEEEeeCCCcEEEEeccCceEe
Q 019482 228 VYDISTWNKIGHKRLLRKPASVLSISL---DGKYLAMGSKDGDICVVDVKKMEIN 279 (340)
Q Consensus 228 i~d~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~~~ 279 (340)
.||+.....+..... ...++++.+-. ...-++..+.+..|.=||....+..
T Consensus 77 aYDV~~N~d~Fyke~-~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 77 AYDVENNSDLFYKEV-PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred EEEcccCchhhhhhC-ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 999998776544333 34577776632 1223444445677888887665544
No 485
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.35 E-value=13 Score=31.89 Aligned_cols=107 Identities=13% Similarity=0.078 Sum_probs=63.7
Q ss_pred eEEEeeCCCeEEEEEccCCeeEEEeecCC-CCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC-C
Q 019482 168 FLATTSTDGSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-K 245 (340)
Q Consensus 168 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-~ 245 (340)
.+..+..+|.+.-.|.++++.+-...... ...+..-.+..+|+ ++.++.++.+..+|.++++.+-...... .
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~------i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~ 143 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK------IYVGSWDGKLYALDASTGTLVWSRNVGGSP 143 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe------EEEecccceEEEEECCCCcEEEEEecCCCe
Confidence 34444667888888887777553222111 12233333444777 6888888899999999898876666555 1
Q ss_pred CeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeec
Q 019482 246 PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW 281 (340)
Q Consensus 246 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 281 (340)
.+.....-.++ .+..++.++.+.-.|..+++..-.
T Consensus 144 ~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 144 YYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred EEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEE
Confidence 11111122233 344444678888888887776543
No 486
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.28 E-value=2.2 Score=22.80 Aligned_cols=40 Identities=10% Similarity=-0.060 Sum_probs=27.3
Q ss_pred CCCCeEEEee-CCCeEEEEEccCCeeEEEeecCCCCceeeEEE
Q 019482 164 LDSEFLATTS-TDGSARIWKTEDGVAWTFLTRNSDEKIELCRF 205 (340)
Q Consensus 164 ~~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~ 205 (340)
|++++|+++. .+++|.++|..+++.+..+... .....+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg--~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG--GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC--CCCceEEe
Confidence 5677666554 5789999999988888777643 22444444
No 487
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.25 E-value=12 Score=33.22 Aligned_cols=76 Identities=14% Similarity=0.172 Sum_probs=50.6
Q ss_pred CeEEEEEecCCCeEEEccCCCcEEEEe---------CCCCceeec----------c-ccCccceeEEEecCCC---CeEE
Q 019482 114 PQKCLSFSVDGSRFAAGGVDGHLRIMH---------WPSLRIILD----------E-PKAHKSVLDMDFSLDS---EFLA 170 (340)
Q Consensus 114 ~v~~~~~~~~~~~l~~~~~dg~i~~~d---------~~~~~~~~~----------~-~~~~~~i~~~~~~~~~---~~l~ 170 (340)
.|..+..++.|..++.++.+|.+.++= +++++.... + ...+-.+..++|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 567788899999998888888655542 123322110 1 1111256788999975 5677
Q ss_pred EeeCCCeEEEEEccCCeeE
Q 019482 171 TTSTDGSARIWKTEDGVAW 189 (340)
Q Consensus 171 ~~~~d~~v~iwd~~~~~~~ 189 (340)
.-+.|..+|+||+.....+
T Consensus 185 iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEecCcEEEEEecCCcchh
Confidence 7778999999999765544
No 488
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.15 E-value=4.7 Score=39.55 Aligned_cols=143 Identities=13% Similarity=0.236 Sum_probs=79.9
Q ss_pred cCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEE--------cCCCCeEEEEecCCCEEEEEecCceeee--ee
Q 019482 32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV--------NPSGDDFVCSTTNGGCKLFEVYGGATDI--NL 101 (340)
Q Consensus 32 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--------~~~~~~l~~~~~d~~i~iw~~~~~~~~~--~~ 101 (340)
+.||.+.+|+++.... . ..+.+-...|..+.. .|.=++++..+.--.|.++-+.-.+... ..
T Consensus 96 TiDn~L~lWny~~~~e-~-------~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNE-L-------AEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred EeCCeEEEEEcCCCCc-c-------ccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccc
Confidence 3788899999986332 2 123333334444433 2322344444444446676654332211 11
Q ss_pred ccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC----CCC---c-e----------------eeccc-cCccc
Q 019482 102 LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW----PSL---R-I----------------ILDEP-KAHKS 156 (340)
Q Consensus 102 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~----~~~---~-~----------------~~~~~-~~~~~ 156 (340)
.......-.....|.|+....+|+.+++| .|| .+|.+ ..+ + + +..+. .+.++
T Consensus 168 f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dp 244 (1311)
T KOG1900|consen 168 FNTSFKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDP 244 (1311)
T ss_pred cccceeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCc
Confidence 11110001134678999988888766665 566 44443 110 0 0 11223 34458
Q ss_pred eeEEEecCCCCeEEEeeCCCeEEEEEccC
Q 019482 157 VLDMDFSLDSEFLATTSTDGSARIWKTED 185 (340)
Q Consensus 157 i~~~~~~~~~~~l~~~~~d~~v~iwd~~~ 185 (340)
|..+++...-+.+.+-+..++|.+||+..
T Consensus 245 I~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 245 IRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeEeccccceeeeeccCceEEEEEccC
Confidence 99999988778899999999999999975
No 489
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.25 E-value=2.5 Score=22.24 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=19.1
Q ss_pred CCCCeeEEEEcCCCCeEEEEe-cC--CCEEEE
Q 019482 62 SEGDPMTIAVNPSGDDFVCST-TN--GGCKLF 90 (340)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~-~d--~~i~iw 90 (340)
....-....|+|||+.|+-++ .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344577899999999887554 44 555555
No 490
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=87.85 E-value=16 Score=31.01 Aligned_cols=41 Identities=15% Similarity=0.011 Sum_probs=20.5
Q ss_pred cEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC
Q 019482 267 DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE 309 (340)
Q Consensus 267 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 309 (340)
.+.+||..+.+-..... .. ...-...+..-++++++.|+.+
T Consensus 291 ~~e~yd~~~~~W~~~~~-lp-~~~~~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGK-LP-QGLAYGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred EeeEEEecCCcccccCC-CC-CCceeeEEEEcCCEEEEEeccC
Confidence 46688877654322111 11 1111222334577888888765
No 491
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=87.79 E-value=36 Score=35.04 Aligned_cols=58 Identities=7% Similarity=0.177 Sum_probs=39.2
Q ss_pred CceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecC
Q 019482 35 SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYG 94 (340)
Q Consensus 35 ~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 94 (340)
..+.++..++......+.......+.+-.....+|.++++ .|+++..+|.++.=++..
T Consensus 460 q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~d--rLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 460 QTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSND--RLFVADSEGKLYSADLPA 517 (1774)
T ss_pred cceeeeccCccccccCccceeeeeccCCchhhhheeecCC--eEEEEeCCCCEEeccccc
Confidence 3468888776655443333445556666667888888766 688888899887777654
No 492
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=87.35 E-value=22 Score=32.10 Aligned_cols=186 Identities=9% Similarity=0.094 Sum_probs=0.0
Q ss_pred ceeEEeeeeec--CCCc------cEEEEcCCCCcccCCCceEEEEeCCCCCCcccC--CeeeEEEecCCCCeeEEEEcCC
Q 019482 5 GTVTCGSWIKR--PENV------NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTS--PLVTYVFDESEGDPMTIAVNPS 74 (340)
Q Consensus 5 ~~v~~~~w~~~--~~~~------~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~ 74 (340)
+||..++..+. .... .++++.| .+.++.+++....-.. . ......+.+ -..++.+....+
T Consensus 300 ~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG----~g~~gsL~~lr~Gi~~-----~~~~~~~~~l~~-v~~iW~l~~~~~ 369 (504)
T PF10433_consen 300 GPIVDFCVVDSSNSGQPSNPSSDQLVACSG----AGKRGSLRILRNGIGI-----EGLELASSELPG-VTGIWTLKLSSS 369 (504)
T ss_dssp -SEEEEEEE-TSSSSS-------EEEEEES----SGGG-EEEEEEESBEE-----E--EEEEEEEST-EEEEEEE-SSSS
T ss_pred CCccceEEeccccCCCCcccccceEEEEEC----cCCCCcEEEEeccCCc-----eeeeeeccCCCC-ceEEEEeeecCC
Q ss_pred CCeEEEEecCCCEEEEEe---cCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccc
Q 019482 75 GDDFVCSTTNGGCKLFEV---YGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP 151 (340)
Q Consensus 75 ~~~l~~~~~d~~i~iw~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~ 151 (340)
+...+..+....-+++.+ +..+..... ... ........+.+-.+. +..++=....+ |++.+...++......
T Consensus 370 ~~~~lv~S~~~~T~vl~~~~~d~~e~~~e~-~~~-~f~~~~~Tl~~~~~~--~~~ivQVt~~~-i~l~~~~~~~~~~~w~ 444 (504)
T PF10433_consen 370 DHSYLVLSFPNETRVLQISEGDDGEEVEEV-EED-GFDTDEPTLAAGNVG--DGRIVQVTPKG-IRLIDLEDGKLTQEWK 444 (504)
T ss_dssp SBSEEEEEESSEEEEEEES----SSEEEEE-----TS-SSS-EEEEEEET--TTEEEEEESSE-EEEEESSSTSEEEEEE
T ss_pred CceEEEEEcCCceEEEEEecccCCcchhhh-hhc-cCCCCCCCeEEEEcC--CCeEEEEecCe-EEEEECCCCeEEEEEe
Q ss_pred cCcc-ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCC----CCceeeEEEcc
Q 019482 152 KAHK-SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS----DEKIELCRFSK 207 (340)
Q Consensus 152 ~~~~-~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~----~~~v~~~~~~~ 207 (340)
...+ .|.+.+.+ +.+++.+..++.+..+.++............ ...+.|+...|
T Consensus 445 ~~~~~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 445 PPAGSIIVAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp -TTS---SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred CCCCCeEEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
No 493
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=87.07 E-value=22 Score=31.82 Aligned_cols=145 Identities=8% Similarity=-0.052 Sum_probs=65.9
Q ss_pred CCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCC--CceeeEEEccCCC
Q 019482 133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD--EKIELCRFSKDGT 210 (340)
Q Consensus 133 dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~ 210 (340)
.+...++|. .|.....+.........+...++|.+++... ..++.+|+. |+.+........ ..=..+...|+|.
T Consensus 127 ~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn 202 (477)
T PF05935_consen 127 SSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGN 202 (477)
T ss_dssp EEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-
T ss_pred CceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCC
Confidence 445666663 3444333322222222266778898776655 788888874 666555442221 1124577788887
Q ss_pred cceEEEE--------EecCCcceEEEEECCCCcEEeeeecc----------------------C-----CCeeEEEECC-
Q 019482 211 KPFLFCT--------VQRGDKALLAVYDISTWNKIGHKRLL----------------------R-----KPASVLSISL- 254 (340)
Q Consensus 211 ~~~~~~~--------~~~~~d~~i~i~d~~~~~~~~~~~~~----------------------~-----~~i~~~~~s~- 254 (340)
.+.+... -.......|..+| .+|+.+...... . -.++++.+.+
T Consensus 203 ~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~ 281 (477)
T PF05935_consen 203 LLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS 281 (477)
T ss_dssp EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT
T ss_pred EEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC
Confidence 6433210 0011123355556 556554332110 0 1378899988
Q ss_pred CCCEEEEeeCCCcEEEEeccCceEeecc
Q 019482 255 DGKYLAMGSKDGDICVVDVKKMEINHWS 282 (340)
Q Consensus 255 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 282 (340)
++.+++++-.-..|...|.++++....+
T Consensus 282 dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 282 DDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp TTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred CCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence 5555555555558888898887766443
No 494
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=86.99 E-value=14 Score=29.46 Aligned_cols=141 Identities=13% Similarity=0.061 Sum_probs=76.0
Q ss_pred EEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeC-C--CeEEEEEccC---CeeEEEee--cCCCCceeeEEEcc
Q 019482 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-D--GSARIWKTED---GVAWTFLT--RNSDEKIELCRFSK 207 (340)
Q Consensus 136 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--~~v~iwd~~~---~~~~~~~~--~~~~~~v~~~~~~~ 207 (340)
-.+||+.+++..........-..+-.+-+||+++.+|+. + ..+++++... ........ ......-.+...-|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 467888877643322222222334467789999999874 2 3588887644 11111110 01222344566678
Q ss_pred CCCcceEEEEEecCCc-ceEEEEECCCC--cEEee--ee-----ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce
Q 019482 208 DGTKPFLFCTVQRGDK-ALLAVYDISTW--NKIGH--KR-----LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME 277 (340)
Q Consensus 208 ~~~~~~~~~~~~~~~d-~~i~i~d~~~~--~~~~~--~~-----~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 277 (340)
||+. ++.++.. ....+|..+.. ..... +. ....--..+...|+|++++.+..+ -.|||..+.+
T Consensus 128 DG~v-----lIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~ 200 (243)
T PF07250_consen 128 DGRV-----LIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNT 200 (243)
T ss_pred CCCE-----EEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCe
Confidence 8886 4444444 34555554321 11111 11 011122356678999999988764 5677888887
Q ss_pred Eeeccc
Q 019482 278 INHWSK 283 (340)
Q Consensus 278 ~~~~~~ 283 (340)
.++.+.
T Consensus 201 v~~~lP 206 (243)
T PF07250_consen 201 VVRTLP 206 (243)
T ss_pred EEeeCC
Confidence 765554
No 495
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=86.90 E-value=23 Score=31.85 Aligned_cols=235 Identities=11% Similarity=0.019 Sum_probs=0.0
Q ss_pred CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 142 (340)
...|.++.+...|. +..|+.|| +..||..+++....... +...+|..+.-+-.+ .+.+|+.+| +++.+.+
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~------~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~ 233 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASP------PLDKAINALIADVQG-RLWVGTDQG-VYLQEAE 233 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCC------cchhhHHHHHHHhcC-cEEEEeccc-eEEEchh
Q ss_pred CCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCce-eeEEEccCCCcceEEEEEecC
Q 019482 143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKI-ELCRFSKDGTKPFLFCTVQRG 221 (340)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~ 221 (340)
..+..............+.-......+-.|+..|-.+.--.+.+-.....+.++.-.- .++....+|. +-.+.
T Consensus 234 G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs------LWv~t 307 (671)
T COG3292 234 GWRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS------LWVGT 307 (671)
T ss_pred hccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCC------Eeeec
Q ss_pred CcceEEEEECCCCcEEeeeeccCCCeeEEEECC--CCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecC
Q 019482 222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (340)
Q Consensus 222 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~ 299 (340)
.++.+++-+-.-.............+...+..| .+..+-....-|.+.+-+-.++...+...... +..|+.+.+..+
T Consensus 308 ~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~R-g~nit~~~~d~~ 386 (671)
T COG3292 308 YGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLR-GMNITTTLEDSR 386 (671)
T ss_pred cCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeecc-ccccchhhhccC
Q ss_pred CeEEEEEecCCcEEE
Q 019482 300 QRVVLTASKEWGAMI 314 (340)
Q Consensus 300 ~~~l~~~~~dg~i~i 314 (340)
|..-+..-.+|-.++
T Consensus 387 g~lWlgs~q~GLsrl 401 (671)
T COG3292 387 GRLWLGSMQNGLSRL 401 (671)
T ss_pred CcEEEEecccchhhh
No 496
>PRK13613 lipoprotein LpqB; Provisional
Probab=86.86 E-value=26 Score=32.37 Aligned_cols=191 Identities=14% Similarity=0.120 Sum_probs=98.3
Q ss_pred CeEEEEEecCCCeEEEccCCC-cEEEEeCCCCce----eeccccCccceeEEEecCCCCeEEEeeC--CC--eEEEEEcc
Q 019482 114 PQKCLSFSVDGSRFAAGGVDG-HLRIMHWPSLRI----ILDEPKAHKSVLDMDFSLDSEFLATTST--DG--SARIWKTE 184 (340)
Q Consensus 114 ~v~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~--~v~iwd~~ 184 (340)
.+.+++.++++..++....++ .+++..+..+.. ...... ...++.-.|.+++ .+-+... ++ .+++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~-~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~- 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA-DGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQG- 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec-cCcccCCcCcCCC-CEEEecCCCCCceEEEEEcC-
Confidence 577889999998888777655 455554433332 111111 2245666777776 4444422 22 2555543
Q ss_pred CCeeEEEee-cCC-CCceeeEEEccCCCcceEEEEEecCCcceEEEEEC---CCCc-EEe---eeeccCCCeeEEEECCC
Q 019482 185 DGVAWTFLT-RNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI---STWN-KIG---HKRLLRKPASVLSISLD 255 (340)
Q Consensus 185 ~~~~~~~~~-~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~---~~~~-~~~---~~~~~~~~i~~~~~s~~ 255 (340)
.++... +. ... ...|..+..|+||....+ +......++|.+=-+ ..+. .+. .+...-..+.+++|..+
T Consensus 441 ~G~~~~-V~~~~l~g~~I~~lrvSrDG~RvAv--v~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~ 517 (599)
T PRK13613 441 DGEPVE-VRTPELDGHRVVAVRVARDGVRVAL--IVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGD 517 (599)
T ss_pred CCcEEE-eeccccCCCEeEEEEECCCccEEEE--EEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCC
Confidence 444422 21 112 237999999999998543 233333445543332 1222 111 11112235889999999
Q ss_pred CCEEEEee-CC--CcEEEEeccCceEeecccccccccceeeEEEecCCe-EEEEEecCCcE
Q 019482 256 GKYLAMGS-KD--GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTASKEWGA 312 (340)
Q Consensus 256 ~~~l~~~~-~d--g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i 312 (340)
+.+++.+. .+ ..+.+.++......... ... -..+..++-..+.+ .++.+..++.|
T Consensus 518 ~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~~-~~~-v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 518 SQLVVLGREEGGVQQARYVQVDGSTPPASA-PAA-VTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred CEEEEEeccCCCCcceEEEecCCcCccccc-ccC-CCCeeEEEecCCCCceEEEEecCCCe
Confidence 88877553 23 33444444433222111 111 23566666666655 45553455554
No 497
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.83 E-value=13 Score=28.84 Aligned_cols=142 Identities=11% Similarity=0.152 Sum_probs=75.6
Q ss_pred eEEEeeCCCeEEEEEccCC--eeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc---eEEEE---ECC--CCcEE
Q 019482 168 FLATTSTDGSARIWKTEDG--VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA---LLAVY---DIS--TWNKI 237 (340)
Q Consensus 168 ~l~~~~~d~~v~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~---~i~i~---d~~--~~~~~ 237 (340)
.|+.+.....|.+|++.+. +....+. .-+.|..+.++..|+++. .+-.-.... .+++| +.. ...++
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GDYlv--TlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGDYLV--TLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccceEE--EEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 3333345678999999833 3444444 346799999999999732 222222223 55654 221 11111
Q ss_pred e-eeec---------------------cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE-ee---c------cccc
Q 019482 238 G-HKRL---------------------LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI-NH---W------SKRL 285 (340)
Q Consensus 238 ~-~~~~---------------------~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~---~------~~~~ 285 (340)
. .+-+ ...+..+++..|-..-|++|+ ++.+.+|.+..... .. . +...
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~ 184 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDH 184 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhhe
Confidence 1 0111 124567788888544455554 56799998865443 11 1 1111
Q ss_pred ccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482 286 HLGTSIALVEFCPTQRVVLTASKEWGAMITKL 317 (340)
Q Consensus 286 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~ 317 (340)
+.+-....+++. +.++|..+.. .+++.++
T Consensus 185 ~~~~~p~~v~ic--~~yiA~~s~~-ev~Vlkl 213 (215)
T PF14761_consen 185 IDNFKPTQVAIC--EGYIAVMSDL-EVLVLKL 213 (215)
T ss_pred ecCceEEEEEEE--eeEEEEecCC-EEEEEEE
Confidence 112234555554 4677777654 6677665
No 498
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=86.43 E-value=20 Score=30.72 Aligned_cols=193 Identities=11% Similarity=0.093 Sum_probs=104.2
Q ss_pred cCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe----cCCCCe--EEEee-CC---CeEEEEEccCC-eeEE
Q 019482 122 VDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF----SLDSEF--LATTS-TD---GSARIWKTEDG-VAWT 190 (340)
Q Consensus 122 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~----~~~~~~--l~~~~-~d---~~v~iwd~~~~-~~~~ 190 (340)
|...+++....++-+.+||+.. +.++.+.. +.++.+.. .-+|+. |+.++ ++ .+|++|.+... ..+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~G-k~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDG-KELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCCC-cEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 3455777777888899999864 55554432 22333322 113443 44444 32 47999988631 2233
Q ss_pred Eeec------CCCCceeeEEEc--cCCCcceEEEEEecCCcceEEEEECC---CC----cEEeeeeccCCCeeEEEECCC
Q 019482 191 FLTR------NSDEKIELCRFS--KDGTKPFLFCTVQRGDKALLAVYDIS---TW----NKIGHKRLLRKPASVLSISLD 255 (340)
Q Consensus 191 ~~~~------~~~~~v~~~~~~--~~~~~~~~~~~~~~~~d~~i~i~d~~---~~----~~~~~~~~~~~~i~~~~~s~~ 255 (340)
.+.. .....++.+++- |....++ .+....+|.+..|.+. .+ +.++.+.. ...+..+.....
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~y---a~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe 218 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALY---AFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDE 218 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EE---EEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETT
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEE---EEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecc
Confidence 3221 111235666663 3322222 4455566777766653 33 24555554 346888888888
Q ss_pred CCEEEEeeCCCcEEEEeccC-----ceEeecccccccccceeeEEEec--CC--eEEEEEecCCcEEEEEecCCC
Q 019482 256 GKYLAMGSKDGDICVVDVKK-----MEINHWSKRLHLGTSIALVEFCP--TQ--RVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 256 ~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~i~~~~~~~--~~--~~l~~~~~dg~i~iw~~~~~~ 321 (340)
..+|+.+-++--|.-|+.+. ++.+......+....|..+++-. ++ -+|++.-.+++..||+...+.
T Consensus 219 ~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 219 TGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN 293 (381)
T ss_dssp TTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred cCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence 88999999988788887753 22222222223345788888754 33 345555567889999987654
No 499
>PLN02153 epithiospecifier protein
Probab=85.83 E-value=20 Score=30.28 Aligned_cols=65 Identities=9% Similarity=0.070 Sum_probs=33.5
Q ss_pred CCCeEEEccCC-----CcEEEEeCCCCceee--cccc---CccceeEEEecCCCCeEEEeeCC-----------CeEEEE
Q 019482 123 DGSRFAAGGVD-----GHLRIMHWPSLRIIL--DEPK---AHKSVLDMDFSLDSEFLATTSTD-----------GSARIW 181 (340)
Q Consensus 123 ~~~~l~~~~~d-----g~i~~~d~~~~~~~~--~~~~---~~~~i~~~~~~~~~~~l~~~~~d-----------~~v~iw 181 (340)
+++.++.|+.+ ..+.+||+.+.+-.. .+.. ........+..-++++++.|+.+ ..+.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 45666777653 357888987654321 1100 11111112222356677777653 247788
Q ss_pred EccCCe
Q 019482 182 KTEDGV 187 (340)
Q Consensus 182 d~~~~~ 187 (340)
|.++.+
T Consensus 165 d~~~~~ 170 (341)
T PLN02153 165 NIADGK 170 (341)
T ss_pred ECCCCe
Confidence 887643
No 500
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.67 E-value=39 Score=33.41 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=27.9
Q ss_pred CCeeEEEEcCCCCeEEEEecCCCEEEEEecCce
Q 019482 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA 96 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~ 96 (340)
.....++|+|....+|.+..+|.|+++-...-+
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceE
Confidence 456789999999999999999999999765444
Done!