Query 019482
Match_columns 340
No_of_seqs 674 out of 1946
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 16:46:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019482.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019482hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 1.2E-50 4.3E-55 336.5 39.0 289 3-318 31-320 (321)
2 1vyh_C Platelet-activating fac 100.0 3.5E-50 1.2E-54 345.2 36.4 288 3-317 107-409 (410)
3 4g56_B MGC81050 protein; prote 100.0 1.2E-48 4.1E-53 329.4 33.0 302 3-322 41-346 (357)
4 1got_B GT-beta; complex (GTP-b 100.0 1.4E-47 4.7E-52 321.2 37.8 285 3-316 54-340 (340)
5 4gqb_B Methylosome protein 50; 100.0 1.1E-47 3.8E-52 321.1 36.5 295 4-321 30-333 (344)
6 2ynn_A Coatomer subunit beta'; 100.0 2.7E-47 9.2E-52 314.5 36.2 283 4-318 13-301 (304)
7 1nr0_A Actin interacting prote 100.0 3.1E-47 1.1E-51 342.8 39.0 313 3-339 146-587 (611)
8 2pbi_B Guanine nucleotide-bind 100.0 1.4E-46 4.8E-51 316.5 37.5 288 3-316 63-354 (354)
9 3iz6_a 40S ribosomal protein R 100.0 3E-47 1E-51 323.9 33.2 294 3-320 65-376 (380)
10 2ynn_A Coatomer subunit beta'; 100.0 6.4E-47 2.2E-51 312.2 33.9 253 55-321 5-261 (304)
11 4h5i_A Guanine nucleotide-exch 100.0 2E-47 6.7E-52 322.8 30.2 303 4-319 14-343 (365)
12 3frx_A Guanine nucleotide-bind 100.0 7.3E-46 2.5E-50 307.9 39.0 289 3-319 16-317 (319)
13 4ery_A WD repeat-containing pr 100.0 8.2E-46 2.8E-50 307.0 39.2 285 3-318 22-311 (312)
14 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.5E-46 2.2E-50 311.6 36.9 289 5-322 17-338 (345)
15 1vyh_C Platelet-activating fac 100.0 1.8E-46 6.1E-51 322.1 33.6 267 55-339 100-386 (410)
16 1erj_A Transcriptional repress 100.0 1.6E-45 5.3E-50 314.7 37.3 284 3-319 63-389 (393)
17 2hes_X YDR267CP; beta-propelle 100.0 2.8E-45 9.6E-50 305.8 36.8 286 3-319 13-328 (330)
18 1nr0_A Actin interacting prote 100.0 4.1E-46 1.4E-50 335.5 34.0 286 4-321 18-357 (611)
19 3ow8_A WD repeat-containing pr 100.0 7E-46 2.4E-50 308.0 32.0 269 55-339 24-296 (321)
20 1got_B GT-beta; complex (GTP-b 100.0 3.3E-45 1.1E-49 306.7 34.2 270 53-339 45-318 (340)
21 2xzm_R RACK1; ribosome, transl 100.0 2.5E-44 8.6E-49 301.8 38.5 294 3-319 20-340 (343)
22 2pbi_B Guanine nucleotide-bind 100.0 5.1E-44 1.8E-48 300.9 34.3 270 54-339 55-332 (354)
23 3fm0_A Protein CIAO1; WDR39,SG 100.0 2E-43 6.8E-48 296.4 35.4 275 54-339 6-309 (345)
24 1gxr_A ESG1, transducin-like e 100.0 9.8E-43 3.3E-47 291.2 38.5 288 2-318 49-336 (337)
25 1k8k_C P40, ARP2/3 complex 41 100.0 4.5E-43 1.6E-47 297.4 36.0 290 3-320 7-362 (372)
26 4ery_A WD repeat-containing pr 100.0 4.5E-43 1.5E-47 290.5 34.8 271 52-339 12-285 (312)
27 2pm7_B Protein transport prote 100.0 3.1E-43 1.1E-47 289.2 31.9 255 57-325 3-291 (297)
28 2ymu_A WD-40 repeat protein; u 100.0 1.3E-42 4.6E-47 311.3 37.9 276 3-316 302-577 (577)
29 3dm0_A Maltose-binding peripla 100.0 1.4E-42 4.8E-47 317.3 38.7 290 3-318 381-692 (694)
30 3ei3_B DNA damage-binding prot 100.0 6.2E-43 2.1E-47 297.9 33.8 287 3-319 72-382 (383)
31 1sq9_A Antiviral protein SKI8; 100.0 9.4E-43 3.2E-47 298.1 34.7 291 3-319 15-395 (397)
32 2j04_B YDR362CP, TAU91; beta p 100.0 9.9E-44 3.4E-48 311.5 29.1 307 3-320 132-518 (524)
33 3iz6_a 40S ribosomal protein R 100.0 1.3E-43 4.3E-48 301.6 28.9 276 52-339 55-350 (380)
34 2pm9_A Protein WEB1, protein t 100.0 4.1E-43 1.4E-47 302.1 31.6 296 5-321 13-339 (416)
35 4aow_A Guanine nucleotide-bind 100.0 1.9E-41 6.4E-46 283.9 40.8 291 3-320 37-338 (340)
36 4e54_B DNA damage-binding prot 100.0 1.7E-43 5.9E-48 306.1 28.2 291 4-321 119-432 (435)
37 3bg1_A Protein SEC13 homolog; 100.0 1.7E-43 5.9E-48 293.2 26.9 258 57-327 7-301 (316)
38 3zwl_B Eukaryotic translation 100.0 9.3E-42 3.2E-46 288.8 38.0 284 3-320 31-347 (369)
39 2ymu_A WD-40 repeat protein; u 100.0 4.1E-42 1.4E-46 308.1 37.7 295 3-339 261-555 (577)
40 3vl1_A 26S proteasome regulato 100.0 3.1E-43 1.1E-47 303.4 28.7 284 7-322 59-368 (420)
41 3k26_A Polycomb protein EED; W 100.0 2E-43 6.9E-48 298.8 27.0 291 3-318 17-365 (366)
42 3dwl_C Actin-related protein 2 100.0 1.5E-43 5.2E-48 301.0 25.0 283 4-317 11-377 (377)
43 2pm9_A Protein WEB1, protein t 100.0 4.3E-43 1.5E-47 302.0 27.1 295 3-320 66-415 (416)
44 3frx_A Guanine nucleotide-bind 100.0 1.2E-41 4E-46 282.6 34.7 259 53-319 7-267 (319)
45 4g56_B MGC81050 protein; prote 100.0 3.1E-43 1.1E-47 296.4 25.5 266 60-340 39-318 (357)
46 2xzm_R RACK1; ribosome, transl 100.0 7.7E-42 2.6E-46 286.7 33.8 262 54-321 12-287 (343)
47 2hes_X YDR267CP; beta-propelle 100.0 5.7E-42 1.9E-46 285.8 32.6 252 53-319 4-280 (330)
48 1erj_A Transcriptional repress 100.0 5.6E-42 1.9E-46 292.7 33.0 266 61-339 62-358 (393)
49 1gxr_A ESG1, transducin-like e 100.0 6E-42 2E-46 286.5 32.4 288 4-321 9-298 (337)
50 3i2n_A WD repeat-containing pr 100.0 3.1E-42 1.1E-46 290.6 30.9 291 3-321 17-355 (357)
51 4aez_A CDC20, WD repeat-contai 100.0 5.7E-41 2E-45 287.4 37.8 281 7-322 96-383 (401)
52 4gqb_B Methylosome protein 50; 100.0 1.5E-41 5E-46 284.1 32.9 249 4-279 82-335 (344)
53 1r5m_A SIR4-interacting protei 100.0 2E-41 6.9E-46 292.1 34.1 288 4-318 108-424 (425)
54 3odt_A Protein DOA1; ubiquitin 100.0 1.5E-40 5E-45 275.2 37.1 281 3-321 17-298 (313)
55 1r5m_A SIR4-interacting protei 100.0 1.1E-41 3.7E-46 293.8 30.2 289 4-321 45-363 (425)
56 3dw8_B Serine/threonine-protei 100.0 1.2E-40 4.2E-45 289.4 33.6 298 3-317 27-444 (447)
57 3f3f_A Nucleoporin SEH1; struc 100.0 6.1E-41 2.1E-45 281.4 30.3 266 56-331 4-349 (351)
58 3gre_A Serine/threonine-protei 100.0 2.8E-41 9.6E-46 292.7 29.0 294 4-316 63-437 (437)
59 3vl1_A 26S proteasome regulato 100.0 8.6E-41 2.9E-45 288.1 31.8 284 6-320 99-420 (420)
60 4gga_A P55CDC, cell division c 100.0 9.2E-40 3.1E-44 281.6 37.8 284 6-321 107-397 (420)
61 1k8k_C P40, ARP2/3 complex 41 100.0 1.2E-39 4E-44 276.4 33.9 246 59-319 4-274 (372)
62 3jrp_A Fusion protein of prote 100.0 3.1E-40 1.1E-44 280.5 30.4 251 57-321 5-289 (379)
63 4aow_A Guanine nucleotide-bind 100.0 1.5E-39 5.3E-44 272.3 34.1 278 53-339 28-312 (340)
64 1yfq_A Cell cycle arrest prote 100.0 2.3E-39 8E-44 271.5 33.8 283 3-317 10-322 (342)
65 3mkq_A Coatomer beta'-subunit; 100.0 8.7E-40 3E-44 304.3 34.4 286 3-319 12-302 (814)
66 3sfz_A APAF-1, apoptotic pepti 100.0 2.1E-39 7.3E-44 314.2 38.3 304 3-339 614-1009(1249)
67 3v7d_B Cell division control p 100.0 6E-39 2.1E-43 280.2 37.0 290 7-339 125-439 (464)
68 3zwl_B Eukaryotic translation 100.0 4.3E-39 1.5E-43 272.4 32.9 268 52-339 21-321 (369)
69 4ggc_A P55CDC, cell division c 100.0 3.5E-38 1.2E-42 261.6 36.3 282 7-319 28-315 (318)
70 2aq5_A Coronin-1A; WD40 repeat 100.0 1.5E-39 5E-44 278.8 28.0 276 33-319 55-342 (402)
71 1pgu_A Actin interacting prote 100.0 6.8E-39 2.3E-43 289.2 33.5 303 3-339 17-345 (615)
72 2xyi_A Probable histone-bindin 100.0 1.1E-38 3.7E-43 275.6 33.1 300 4-319 45-410 (430)
73 1pgu_A Actin interacting prote 100.0 4.2E-38 1.4E-42 284.0 38.3 310 3-339 115-590 (615)
74 1sq9_A Antiviral protein SKI8; 100.0 1.5E-39 5.3E-44 278.2 27.1 251 55-321 8-324 (397)
75 3dwl_C Actin-related protein 2 100.0 2.8E-40 9.6E-45 280.9 22.2 244 59-318 7-280 (377)
76 3i2n_A WD repeat-containing pr 100.0 4.8E-39 1.6E-43 271.1 29.3 257 53-322 8-294 (357)
77 2oaj_A Protein SNI1; WD40 repe 100.0 7.3E-39 2.5E-43 298.5 32.2 201 3-236 16-245 (902)
78 3dm0_A Maltose-binding peripla 100.0 1.8E-38 6.2E-43 290.1 34.2 257 55-320 374-633 (694)
79 2pm7_B Protein transport prote 100.0 3.1E-38 1E-42 259.4 31.3 246 3-274 8-284 (297)
80 3mkq_A Coatomer beta'-subunit; 100.0 1E-38 3.6E-43 297.1 32.0 251 55-320 5-260 (814)
81 3sfz_A APAF-1, apoptotic pepti 100.0 5.5E-39 1.9E-43 311.3 30.6 310 3-339 839-1184(1249)
82 2vdu_B TRNA (guanine-N(7)-)-me 100.0 8.9E-38 3E-42 271.6 34.7 248 60-321 99-393 (450)
83 4a11_B DNA excision repair pro 100.0 6.7E-38 2.3E-42 268.7 33.2 296 3-322 42-368 (408)
84 3gre_A Serine/threonine-protei 100.0 3E-39 1E-43 279.9 25.0 257 53-321 52-361 (437)
85 1p22_A F-BOX/WD-repeat protein 100.0 1.1E-37 3.8E-42 269.8 33.8 272 4-321 133-416 (435)
86 3mmy_A MRNA export factor; mRN 100.0 2.2E-37 7.6E-42 261.8 32.9 293 3-321 38-348 (368)
87 2oaj_A Protein SNI1; WD40 repe 100.0 7E-38 2.4E-42 291.9 31.9 291 3-317 150-659 (902)
88 3k26_A Polycomb protein EED; W 100.0 1.7E-38 5.8E-43 268.5 24.9 272 57-339 12-341 (366)
89 3ei3_B DNA damage-binding prot 100.0 1.4E-37 4.7E-42 264.9 29.4 255 52-321 62-341 (383)
90 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.3E-36 7.9E-41 262.4 37.4 275 3-320 158-443 (445)
91 3bg1_A Protein SEC13 homolog; 100.0 9E-38 3.1E-42 258.9 27.0 246 3-274 12-292 (316)
92 3jro_A Fusion protein of prote 100.0 4.5E-38 1.5E-42 289.2 27.6 254 57-324 3-290 (753)
93 3v7d_B Cell division control p 100.0 1.7E-36 5.9E-41 264.6 36.1 284 3-318 161-462 (464)
94 3odt_A Protein DOA1; ubiquitin 100.0 6.9E-37 2.4E-41 253.2 31.0 261 52-339 7-272 (313)
95 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.3E-36 1.1E-40 261.4 36.3 270 7-321 122-393 (445)
96 3dw8_B Serine/threonine-protei 100.0 1.7E-37 5.9E-42 269.6 27.6 245 62-321 27-375 (447)
97 3jrp_A Fusion protein of prote 100.0 4.7E-36 1.6E-40 254.7 35.4 247 3-275 10-287 (379)
98 1yfq_A Cell cycle arrest prote 100.0 9.9E-38 3.4E-42 261.6 24.5 262 59-339 7-300 (342)
99 4e54_B DNA damage-binding prot 100.0 9.6E-38 3.3E-42 270.1 25.0 270 56-339 112-405 (435)
100 4gq1_A NUP37; propeller, trans 100.0 8.3E-37 2.9E-41 260.6 28.2 298 4-318 15-388 (393)
101 4aez_A CDC20, WD repeat-contai 100.0 1.1E-36 3.9E-41 260.7 29.1 267 53-339 81-355 (401)
102 3f3f_A Nucleoporin SEH1; struc 100.0 4.6E-36 1.6E-40 251.7 31.7 253 3-281 10-343 (351)
103 2j04_B YDR362CP, TAU91; beta p 100.0 8.7E-38 3E-42 273.9 20.2 245 62-318 132-427 (524)
104 2aq5_A Coronin-1A; WD40 repeat 100.0 2.3E-36 7.7E-41 259.0 28.5 248 65-321 36-301 (402)
105 2j04_A TAU60, YPL007P, hypothe 100.0 1.9E-36 6.4E-41 260.0 24.9 262 3-318 14-296 (588)
106 4h5i_A Guanine nucleotide-exch 100.0 1.7E-35 5.6E-40 249.9 29.9 250 6-275 75-343 (365)
107 3bws_A Protein LP49; two-domai 100.0 9.2E-35 3.2E-39 251.4 34.3 285 4-318 122-431 (433)
108 3lrv_A PRE-mRNA-splicing facto 100.0 3.2E-36 1.1E-40 252.6 23.2 269 19-318 48-332 (343)
109 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.7E-35 5.7E-40 257.3 28.0 246 64-317 5-337 (450)
110 3vu4_A KMHSV2; beta-propeller 100.0 1.2E-34 4.2E-39 243.8 32.2 280 3-325 18-342 (355)
111 3vu4_A KMHSV2; beta-propeller 100.0 6.6E-35 2.3E-39 245.5 29.2 239 58-321 14-273 (355)
112 3lrv_A PRE-mRNA-splicing facto 100.0 1.4E-35 4.8E-40 248.7 24.0 233 70-321 43-294 (343)
113 3jro_A Fusion protein of prote 100.0 2.6E-35 8.8E-40 270.9 27.8 247 3-275 8-285 (753)
114 1p22_A F-BOX/WD-repeat protein 100.0 1.1E-34 3.6E-39 251.2 30.1 254 60-339 130-391 (435)
115 2xyi_A Probable histone-bindin 100.0 2.9E-35 9.9E-40 254.2 26.2 261 3-276 127-411 (430)
116 4a11_B DNA excision repair pro 100.0 9.1E-36 3.1E-40 255.5 22.6 288 35-339 23-340 (408)
117 2w18_A PALB2, fancn, partner a 100.0 2.3E-34 7.8E-39 232.6 29.1 269 33-317 61-355 (356)
118 3mmy_A MRNA export factor; mRN 100.0 1E-34 3.6E-39 245.4 28.0 265 55-339 31-321 (368)
119 4gga_A P55CDC, cell division c 100.0 6E-34 2.1E-38 245.3 32.6 249 3-281 146-401 (420)
120 1l0q_A Surface layer protein; 100.0 1E-32 3.4E-37 235.5 37.4 259 33-319 10-275 (391)
121 2j04_A TAU60, YPL007P, hypothe 100.0 4.3E-34 1.5E-38 245.4 21.2 240 62-339 14-271 (588)
122 4ggc_A P55CDC, cell division c 100.0 3.7E-32 1.3E-36 225.3 31.5 255 66-340 28-291 (318)
123 3bws_A Protein LP49; two-domai 100.0 4.4E-31 1.5E-35 228.3 33.6 297 5-320 61-391 (433)
124 4gq1_A NUP37; propeller, trans 100.0 2.3E-32 7.8E-37 233.2 23.5 235 20-274 102-388 (393)
125 1l0q_A Surface layer protein; 100.0 3.3E-30 1.1E-34 219.9 36.4 285 3-321 30-344 (391)
126 2w18_A PALB2, fancn, partner a 100.0 3E-31 1E-35 214.4 24.3 243 5-273 87-355 (356)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 3.9E-31 1.3E-35 226.8 23.2 301 6-338 64-402 (415)
128 1xfd_A DIP, dipeptidyl aminope 100.0 1.1E-28 3.6E-33 226.9 27.3 290 5-321 17-395 (723)
129 2ecf_A Dipeptidyl peptidase IV 100.0 6.9E-28 2.4E-32 222.1 30.7 293 4-321 36-415 (741)
130 2ojh_A Uncharacterized protein 100.0 2.1E-28 7E-33 200.4 23.1 256 31-310 18-293 (297)
131 1nir_A Nitrite reductase; hemo 100.0 3E-27 1E-31 208.7 30.4 278 11-321 144-460 (543)
132 3u4y_A Uncharacterized protein 100.0 1.1E-26 3.9E-31 193.5 32.3 267 33-321 18-306 (331)
133 1ri6_A Putative isomerase YBHE 100.0 1.5E-26 5.2E-31 193.5 32.9 268 33-320 13-309 (343)
134 3vgz_A Uncharacterized protein 100.0 9.6E-26 3.3E-30 189.5 36.3 286 5-310 41-335 (353)
135 2hqs_A Protein TOLB; TOLB, PAL 100.0 1E-26 3.5E-31 199.4 30.3 237 35-301 159-410 (415)
136 1nir_A Nitrite reductase; hemo 100.0 1.8E-26 6E-31 203.9 31.6 294 6-321 180-516 (543)
137 3hfq_A Uncharacterized protein 100.0 8.8E-26 3E-30 189.4 33.4 271 33-320 14-318 (347)
138 1pby_B Quinohemoprotein amine 100.0 6E-26 2E-30 189.4 30.1 265 33-321 9-312 (337)
139 2z3z_A Dipeptidyl aminopeptida 100.0 4.1E-26 1.4E-30 209.1 29.4 285 5-319 82-435 (706)
140 2ecf_A Dipeptidyl peptidase IV 100.0 8.1E-27 2.8E-31 215.0 24.3 250 63-321 36-369 (741)
141 3scy_A Hypothetical bacterial 100.0 1.3E-24 4.4E-29 183.3 34.9 280 20-321 14-339 (361)
142 1ri6_A Putative isomerase YBHE 99.9 2.3E-24 7.8E-29 180.3 31.8 274 4-301 37-335 (343)
143 1k32_A Tricorn protease; prote 99.9 4.5E-25 1.5E-29 210.1 29.5 281 4-317 203-500 (1045)
144 3vgz_A Uncharacterized protein 99.9 2.7E-24 9.4E-29 180.6 29.9 240 63-320 40-304 (353)
145 2z3z_A Dipeptidyl aminopeptida 99.9 3.5E-25 1.2E-29 203.0 25.6 239 64-320 82-390 (706)
146 3o4h_A Acylamino-acid-releasin 99.9 1.6E-24 5.3E-29 194.3 26.2 269 5-318 22-312 (582)
147 1jmx_B Amine dehydrogenase; ox 99.9 3.3E-24 1.1E-28 179.7 24.9 233 68-321 4-327 (349)
148 2oit_A Nucleoporin 214KDA; NH2 99.9 1.7E-24 5.7E-29 186.3 23.4 206 63-276 36-279 (434)
149 1k32_A Tricorn protease; prote 99.9 5.6E-24 1.9E-28 202.6 29.1 240 58-319 198-461 (1045)
150 1xfd_A DIP, dipeptidyl aminope 99.9 2.5E-24 8.4E-29 197.9 25.8 288 6-307 62-428 (723)
151 1jof_A Carboxy-CIS,CIS-muconat 99.9 3.2E-23 1.1E-27 174.9 30.5 270 35-320 14-342 (365)
152 3u4y_A Uncharacterized protein 99.9 9.4E-24 3.2E-28 175.8 26.2 233 70-319 4-252 (331)
153 2ojh_A Uncharacterized protein 99.9 3.2E-24 1.1E-28 175.4 22.4 221 81-320 18-259 (297)
154 3o4h_A Acylamino-acid-releasin 99.9 2.7E-24 9.2E-29 192.8 22.4 231 63-317 21-274 (582)
155 3hfq_A Uncharacterized protein 99.9 3.7E-22 1.3E-26 167.4 31.8 258 6-280 41-324 (347)
156 1z68_A Fibroblast activation p 99.9 6E-24 2.1E-28 195.2 22.7 281 8-320 19-392 (719)
157 3pe7_A Oligogalacturonate lyas 99.9 4.3E-23 1.5E-27 175.7 24.8 286 10-321 41-384 (388)
158 3scy_A Hypothetical bacterial 99.9 2.2E-21 7.4E-26 163.6 34.5 275 6-297 51-360 (361)
159 1pby_B Quinohemoprotein amine 99.9 1.9E-22 6.4E-27 168.2 25.3 244 6-284 35-319 (337)
160 2oit_A Nucleoporin 214KDA; NH2 99.9 1.5E-23 5.3E-28 180.3 19.0 201 113-320 37-279 (434)
161 1jmx_B Amine dehydrogenase; ox 99.9 6E-22 2E-26 166.0 26.5 245 10-283 5-333 (349)
162 1z68_A Fibroblast activation p 99.9 1.5E-23 5.3E-28 192.5 17.5 240 68-320 20-345 (719)
163 4a5s_A Dipeptidyl peptidase 4 99.9 1.1E-21 3.8E-26 180.4 26.6 284 5-321 17-400 (740)
164 3c5m_A Oligogalacturonate lyas 99.9 9.4E-22 3.2E-26 167.7 22.0 287 7-322 38-385 (396)
165 4a5s_A Dipeptidyl peptidase 4 99.9 9.9E-22 3.4E-26 180.7 22.7 248 65-319 18-351 (740)
166 3fvz_A Peptidyl-glycine alpha- 99.9 4E-20 1.4E-24 153.7 29.6 247 63-321 23-324 (329)
167 1q7f_A NHL, brain tumor CG1071 99.9 1.3E-19 4.5E-24 147.6 30.7 247 61-319 27-280 (286)
168 3azo_A Aminopeptidase; POP fam 99.9 1.2E-19 4.2E-24 165.1 31.6 288 4-319 23-367 (662)
169 1jof_A Carboxy-CIS,CIS-muconat 99.9 7.4E-20 2.5E-24 154.4 25.5 249 6-276 41-342 (365)
170 3pe7_A Oligogalacturonate lyas 99.9 1.6E-20 5.4E-25 159.8 20.4 251 57-319 24-329 (388)
171 3azo_A Aminopeptidase; POP fam 99.9 3E-20 1E-24 169.0 21.2 251 53-320 13-324 (662)
172 2dg1_A DRP35, lactonase; beta 99.9 3.9E-18 1.3E-22 142.0 30.9 283 4-320 5-315 (333)
173 2gop_A Trilobed protease; beta 99.8 3.5E-18 1.2E-22 143.0 28.5 224 64-318 59-330 (347)
174 2oiz_A Aromatic amine dehydrog 99.8 2.1E-18 7.3E-23 144.9 26.9 265 33-320 29-335 (361)
175 3c5m_A Oligogalacturonate lyas 99.8 1.7E-19 5.8E-24 153.7 18.2 238 65-319 37-329 (396)
176 3e5z_A Putative gluconolactona 99.8 2.2E-17 7.4E-22 135.1 29.8 238 58-321 22-286 (296)
177 3fvz_A Peptidyl-glycine alpha- 99.8 1.4E-17 4.8E-22 138.3 28.3 209 61-275 88-322 (329)
178 1rwi_B Serine/threonine-protei 99.8 1.3E-17 4.5E-22 134.5 26.4 241 65-321 25-266 (270)
179 2oiz_A Aromatic amine dehydrog 99.8 2.6E-17 8.9E-22 138.3 28.5 265 9-301 54-360 (361)
180 3dsm_A Uncharacterized protein 99.8 1.4E-16 4.8E-21 132.1 30.5 236 64-318 44-301 (328)
181 2xdw_A Prolyl endopeptidase; a 99.8 6.2E-18 2.1E-22 154.9 24.3 244 62-320 123-415 (710)
182 2z2n_A Virginiamycin B lyase; 99.8 2.6E-15 8.8E-20 122.7 37.1 278 5-318 15-294 (299)
183 1q7f_A NHL, brain tumor CG1071 99.8 1.7E-16 5.9E-21 129.1 29.1 237 6-276 31-281 (286)
184 3no2_A Uncharacterized protein 99.8 2E-16 6.8E-21 127.6 28.3 217 74-307 4-231 (276)
185 1qks_A Cytochrome CD1 nitrite 99.8 6.5E-16 2.2E-20 136.3 33.9 268 33-320 175-539 (567)
186 3e5z_A Putative gluconolactona 99.8 2.9E-16 9.8E-21 128.4 29.2 238 7-279 30-290 (296)
187 2gop_A Trilobed protease; beta 99.8 2.1E-17 7.2E-22 138.3 22.8 217 64-318 15-290 (347)
188 2z2n_A Virginiamycin B lyase; 99.8 1.8E-15 6E-20 123.7 32.6 242 59-317 10-253 (299)
189 2bkl_A Prolyl endopeptidase; m 99.8 8E-18 2.7E-22 153.7 20.5 243 61-320 118-398 (695)
190 2dg1_A DRP35, lactonase; beta 99.8 1.2E-16 3.9E-21 133.1 23.8 238 64-317 6-261 (333)
191 2xdw_A Prolyl endopeptidase; a 99.8 4.2E-16 1.4E-20 142.8 26.2 251 5-277 125-416 (710)
192 2mad_H Methylamine dehydrogena 99.8 1.2E-14 3.9E-19 122.3 32.8 240 68-321 70-352 (373)
193 1rwi_B Serine/threonine-protei 99.8 1.1E-15 3.8E-20 123.1 25.4 203 62-278 65-267 (270)
194 2bkl_A Prolyl endopeptidase; m 99.8 4E-16 1.4E-20 142.5 25.3 242 72-320 76-350 (695)
195 2qc5_A Streptogramin B lactona 99.8 5.5E-14 1.9E-18 114.8 35.7 277 5-317 20-298 (300)
196 3dsm_A Uncharacterized protein 99.7 3.7E-15 1.3E-19 123.5 28.1 240 33-296 62-319 (328)
197 3sjl_D Methylamine dehydrogena 99.7 2.5E-15 8.5E-20 124.9 26.3 266 34-321 58-365 (386)
198 3no2_A Uncharacterized protein 99.7 8.9E-15 3.1E-19 117.9 28.9 212 20-263 6-231 (276)
199 1qks_A Cytochrome CD1 nitrite 99.7 6E-15 2.1E-19 130.2 30.2 234 73-319 165-421 (567)
200 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 1E-14 3.5E-19 120.1 29.0 248 60-321 14-301 (314)
201 1yr2_A Prolyl oligopeptidase; 99.7 4.2E-16 1.4E-20 143.4 21.5 242 62-319 161-441 (741)
202 3hrp_A Uncharacterized protein 99.7 6.8E-14 2.3E-18 119.2 32.8 239 64-317 131-408 (409)
203 2qc5_A Streptogramin B lactona 99.7 1.1E-13 3.9E-18 113.0 32.2 240 61-317 17-258 (300)
204 3c75_H MADH, methylamine dehyd 99.7 1.1E-14 3.8E-19 123.2 24.1 265 35-321 99-404 (426)
205 3g4e_A Regucalcin; six bladed 99.7 1.5E-13 5.1E-18 112.3 29.2 230 60-308 9-261 (297)
206 1yr2_A Prolyl oligopeptidase; 99.7 3.3E-14 1.1E-18 130.8 24.4 241 72-320 115-394 (741)
207 2ece_A 462AA long hypothetical 99.6 4.7E-13 1.6E-17 112.0 27.7 287 19-307 27-399 (462)
208 2ghs_A AGR_C_1268P; regucalcin 99.6 1.2E-12 4.1E-17 108.3 30.2 222 65-308 50-291 (326)
209 1xip_A Nucleoporin NUP159; bet 99.6 9.5E-15 3.3E-19 121.9 16.8 177 65-262 39-231 (388)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 4.7E-13 1.6E-17 110.1 25.9 202 62-275 69-299 (314)
211 3iuj_A Prolyl endopeptidase; h 99.6 3E-14 1E-18 129.9 20.2 240 61-318 126-404 (693)
212 3dr2_A Exported gluconolactona 99.6 4.8E-13 1.7E-17 109.7 25.3 229 59-310 40-298 (305)
213 1xip_A Nucleoporin NUP159; bet 99.6 3.3E-14 1.1E-18 118.6 17.1 175 113-307 38-232 (388)
214 2qe8_A Uncharacterized protein 99.6 1.3E-12 4.5E-17 108.9 26.8 246 64-315 17-317 (343)
215 3g4e_A Regucalcin; six bladed 99.6 5.1E-12 1.8E-16 103.1 26.9 228 9-264 17-261 (297)
216 3hrp_A Uncharacterized protein 99.6 9.7E-12 3.3E-16 106.0 29.2 238 6-273 132-408 (409)
217 3dr2_A Exported gluconolactona 99.6 1.5E-11 5.3E-16 100.7 29.0 232 7-272 47-303 (305)
218 3sjl_D Methylamine dehydrogena 99.5 1E-11 3.5E-16 103.3 25.9 218 65-299 138-384 (386)
219 2mad_H Methylamine dehydrogena 99.5 5.9E-11 2E-15 99.7 30.8 201 65-281 126-356 (373)
220 1mda_H Methylamine dehydrogena 99.5 3E-12 1E-16 106.6 20.7 255 36-321 47-348 (368)
221 2ghs_A AGR_C_1268P; regucalcin 99.5 1.5E-10 5.2E-15 95.7 27.5 188 63-265 89-292 (326)
222 3iuj_A Prolyl endopeptidase; h 99.5 1.4E-11 4.7E-16 112.5 22.7 251 5-279 129-409 (693)
223 1yiq_A Quinohemoprotein alcoho 99.5 9.2E-11 3.1E-15 106.5 27.5 221 84-306 182-536 (689)
224 2hz6_A Endoplasmic reticulum t 99.4 1.2E-13 4.2E-18 116.2 6.5 203 74-301 8-216 (369)
225 2qe8_A Uncharacterized protein 99.4 8E-11 2.7E-15 98.1 23.5 249 6-271 18-317 (343)
226 1kb0_A Quinohemoprotein alcoho 99.4 2.2E-10 7.5E-15 103.8 27.5 242 75-318 174-566 (677)
227 3c75_H MADH, methylamine dehyd 99.4 4.7E-11 1.6E-15 101.0 21.3 231 73-321 82-361 (426)
228 2ece_A 462AA long hypothetical 99.4 9.5E-10 3.3E-14 92.3 28.6 218 33-263 104-399 (462)
229 2iwa_A Glutamine cyclotransfer 99.4 7.5E-10 2.6E-14 87.3 25.0 196 114-320 22-238 (266)
230 2hz6_A Endoplasmic reticulum t 99.4 9.2E-14 3.1E-18 116.9 2.9 182 123-320 8-193 (369)
231 1yiq_A Quinohemoprotein alcoho 99.4 2.7E-10 9.2E-15 103.5 25.6 237 74-321 120-507 (689)
232 1kb0_A Quinohemoprotein alcoho 99.4 6E-10 2E-14 101.0 27.5 238 74-321 127-509 (677)
233 1fwx_A Nitrous oxide reductase 99.4 3.3E-11 1.1E-15 104.5 17.6 221 74-308 100-407 (595)
234 3hxj_A Pyrrolo-quinoline quino 99.3 5.1E-10 1.7E-14 92.6 22.3 220 75-321 107-326 (330)
235 1npe_A Nidogen, entactin; glyc 99.3 6.4E-09 2.2E-13 83.3 27.9 222 64-301 36-263 (267)
236 3nol_A Glutamine cyclotransfer 99.3 1.3E-09 4.5E-14 84.9 21.1 192 114-318 44-253 (262)
237 2fp8_A Strictosidine synthase; 99.3 6.3E-09 2.1E-13 85.8 26.8 251 58-318 13-312 (322)
238 2iwa_A Glutamine cyclotransfer 99.3 4E-09 1.4E-13 83.2 23.4 198 65-277 22-239 (266)
239 3q7m_A Lipoprotein YFGL, BAMB; 99.3 1E-08 3.6E-13 86.4 27.8 222 75-316 143-375 (376)
240 1mda_H Methylamine dehydrogena 99.3 7.8E-10 2.7E-14 92.1 20.1 231 34-298 95-366 (368)
241 3q7m_A Lipoprotein YFGL, BAMB; 99.3 1.5E-08 5.1E-13 85.5 28.3 222 74-320 102-338 (376)
242 3nok_A Glutaminyl cyclase; bet 99.3 1.9E-09 6.5E-14 83.9 20.4 184 113-309 55-255 (268)
243 1fwx_A Nitrous oxide reductase 99.3 1.6E-09 5.4E-14 94.1 21.4 190 123-319 100-361 (595)
244 3mbr_X Glutamine cyclotransfer 99.2 1.5E-08 5.1E-13 78.3 23.2 195 112-319 20-233 (243)
245 3hxj_A Pyrrolo-quinoline quino 99.2 2.4E-09 8.4E-14 88.4 19.4 221 65-316 61-281 (330)
246 2p4o_A Hypothetical protein; p 99.2 1.4E-07 4.8E-12 77.1 29.2 227 64-309 32-278 (306)
247 4a2l_A BT_4663, two-component 99.2 1.1E-06 3.8E-11 81.5 36.8 242 64-318 263-525 (795)
248 3nol_A Glutamine cyclotransfer 99.1 2.1E-08 7.3E-13 78.1 21.0 187 61-265 38-245 (262)
249 1kv9_A Type II quinohemoprotei 99.1 2.4E-07 8.1E-12 84.0 30.5 222 84-307 177-520 (668)
250 1npe_A Nidogen, entactin; glyc 99.1 2.1E-07 7.1E-12 74.4 26.9 228 76-319 2-238 (267)
251 4a2l_A BT_4663, two-component 99.1 3E-06 1E-10 78.7 36.8 240 63-317 309-569 (795)
252 1kv9_A Type II quinohemoprotei 99.1 6.1E-08 2.1E-12 87.8 24.3 236 75-321 117-490 (668)
253 1k3i_A Galactose oxidase precu 99.0 5.8E-07 2E-11 81.5 29.4 284 9-308 190-530 (656)
254 3tc9_A Hypothetical hydrolase; 99.0 5E-07 1.7E-11 77.3 26.9 239 65-318 138-429 (430)
255 2xe4_A Oligopeptidase B; hydro 99.0 5E-08 1.7E-12 89.7 21.6 200 114-319 175-398 (751)
256 4hw6_A Hypothetical protein, I 99.0 9.9E-07 3.4E-11 75.5 27.6 242 64-318 139-432 (433)
257 3qqz_A Putative uncharacterize 99.0 2.4E-06 8.2E-11 66.9 26.1 203 58-273 21-251 (255)
258 3mbr_X Glutamine cyclotransfer 99.0 5.9E-07 2E-11 69.4 22.0 183 65-264 22-223 (243)
259 3v9f_A Two-component system se 99.0 7.3E-06 2.5E-10 76.0 33.3 242 64-318 211-477 (781)
260 3nok_A Glutaminyl cyclase; bet 99.0 3.3E-07 1.1E-11 71.4 20.3 181 66-264 57-254 (268)
261 1ijq_A LDL receptor, low-densi 98.9 1.1E-05 3.6E-10 66.2 30.4 226 77-317 3-236 (316)
262 2ad6_A Methanol dehydrogenase 98.9 2.1E-06 7.2E-11 76.3 27.7 228 76-305 161-523 (571)
263 3v9f_A Two-component system se 98.9 8.4E-06 2.9E-10 75.6 32.8 244 63-318 312-567 (781)
264 2ad6_A Methanol dehydrogenase 98.9 7.4E-07 2.5E-11 79.2 24.4 237 75-321 115-496 (571)
265 1w6s_A Methanol dehydrogenase 98.9 3.6E-06 1.2E-10 74.8 28.5 243 69-321 111-505 (599)
266 3v64_C Agrin; beta propeller, 98.9 1.5E-05 5.1E-10 66.2 30.3 235 64-316 34-272 (349)
267 3v65_B Low-density lipoprotein 98.9 7.5E-06 2.6E-10 69.1 28.6 233 66-316 79-315 (386)
268 2fp8_A Strictosidine synthase; 98.9 3.5E-07 1.2E-11 75.3 19.6 184 114-308 20-248 (322)
269 1k3i_A Galactose oxidase precu 98.9 1.5E-06 5E-11 78.9 25.0 247 67-319 189-497 (656)
270 3v64_C Agrin; beta propeller, 98.9 2.1E-05 7.3E-10 65.3 30.3 206 63-281 72-281 (349)
271 2xe4_A Oligopeptidase B; hydro 98.9 5.8E-07 2E-11 82.7 22.2 195 65-273 175-398 (751)
272 2p4o_A Hypothetical protein; p 98.8 2.2E-06 7.5E-11 69.9 23.0 193 113-317 32-240 (306)
273 3v65_B Low-density lipoprotein 98.8 1.1E-05 3.6E-10 68.1 27.1 207 63-282 115-325 (386)
274 3p5b_L Low density lipoprotein 98.8 3.1E-05 1.1E-09 65.6 29.0 226 77-316 85-317 (400)
275 3qqz_A Putative uncharacterize 98.8 1.1E-05 3.7E-10 63.2 24.1 198 113-318 27-250 (255)
276 1w6s_A Methanol dehydrogenase 98.8 8.6E-06 2.9E-10 72.4 26.3 221 84-306 181-534 (599)
277 1flg_A Protein (quinoprotein e 98.8 1.9E-06 6.5E-11 76.6 21.9 172 134-307 291-548 (582)
278 1flg_A Protein (quinoprotein e 98.8 1.2E-05 4.1E-10 71.5 26.2 240 75-321 117-518 (582)
279 3kya_A Putative phosphatase; s 98.7 4.6E-05 1.6E-09 65.6 27.4 245 66-320 141-476 (496)
280 3amr_A 3-phytase; beta-propell 98.7 1.6E-05 5.6E-10 64.7 22.7 190 123-319 39-263 (355)
281 2xbg_A YCF48-like protein; pho 98.6 0.00012 3.9E-09 60.3 32.4 233 63-315 79-318 (327)
282 2ism_A Putative oxidoreductase 98.6 0.00012 4.2E-09 60.8 26.9 233 63-308 30-334 (352)
283 3sov_A LRP-6, low-density lipo 98.6 6.7E-05 2.3E-09 61.4 24.7 205 65-281 36-244 (318)
284 1ijq_A LDL receptor, low-densi 98.6 0.00016 5.3E-09 59.2 31.3 208 63-282 29-245 (316)
285 3p5b_L Low density lipoprotein 98.6 0.00022 7.4E-09 60.4 30.7 209 62-282 110-327 (400)
286 3m0c_C LDL receptor, low-densi 98.6 0.00024 8.1E-09 65.3 29.4 226 77-316 397-629 (791)
287 3sov_A LRP-6, low-density lipo 98.6 0.00012 4E-09 59.9 24.7 227 77-318 6-237 (318)
288 1n7d_A LDL receptor, low-densi 98.5 6.6E-06 2.3E-10 74.8 17.0 219 85-317 386-612 (699)
289 2xbg_A YCF48-like protein; pho 98.5 0.00034 1.2E-08 57.5 29.3 243 63-325 35-284 (327)
290 2p9w_A MAL S 1 allergenic prot 98.5 0.00011 3.6E-09 59.4 21.4 156 114-275 14-215 (334)
291 3amr_A 3-phytase; beta-propell 98.4 0.00017 5.9E-09 58.8 22.2 191 74-282 39-271 (355)
292 3a9g_A Putative uncharacterize 98.4 0.00058 2E-08 56.7 27.0 233 63-307 28-330 (354)
293 3tc9_A Hypothetical hydrolase; 98.4 2.5E-05 8.6E-10 66.8 17.6 155 156-319 138-301 (430)
294 3m0c_C LDL receptor, low-densi 98.4 0.0012 4E-08 60.8 29.3 205 62-279 422-636 (791)
295 2p9w_A MAL S 1 allergenic prot 98.4 0.00036 1.2E-08 56.4 22.2 211 58-274 7-264 (334)
296 1n7d_A LDL receptor, low-densi 98.3 2E-05 7E-10 71.6 16.0 208 64-283 406-622 (699)
297 3kya_A Putative phosphatase; s 98.3 0.0012 4.2E-08 56.8 25.4 203 64-280 186-480 (496)
298 4hw6_A Hypothetical protein, I 98.3 0.0016 5.5E-08 55.6 32.2 196 113-316 139-371 (433)
299 3sre_A PON1, serum paraoxonase 98.2 0.00034 1.2E-08 57.7 20.2 202 64-274 50-297 (355)
300 3s94_A LRP-6, low-density lipo 98.2 0.0011 3.6E-08 59.5 23.8 204 63-278 39-246 (619)
301 3s94_A LRP-6, low-density lipo 98.1 0.0042 1.4E-07 55.7 27.1 221 85-318 18-242 (619)
302 2g8s_A Glucose/sorbosone dehyd 98.1 0.0025 8.4E-08 52.9 28.2 246 64-318 18-351 (353)
303 3sre_A PON1, serum paraoxonase 98.1 0.0012 4.1E-08 54.5 21.1 185 114-309 51-287 (355)
304 2xzh_A Clathrin heavy chain 1; 98.1 0.0021 7E-08 51.7 30.0 238 68-320 71-333 (365)
305 2ism_A Putative oxidoreductase 98.0 0.0016 5.3E-08 54.1 20.2 191 63-263 74-333 (352)
306 2vpj_A Kelch-like protein 12; 98.0 0.0027 9.3E-08 51.3 21.1 188 74-278 62-281 (301)
307 4a0p_A LRP6, LRP-6, low-densit 98.0 0.0081 2.8E-07 53.9 28.5 224 77-317 8-235 (628)
308 2vpj_A Kelch-like protein 12; 98.0 0.0044 1.5E-07 50.0 23.7 218 74-310 14-264 (301)
309 3s25_A Hypothetical 7-bladed b 98.0 0.0031 1.1E-07 50.9 20.5 178 118-321 58-255 (302)
310 1bpo_A Protein (clathrin); cla 97.9 0.0089 3.1E-07 50.1 29.4 238 68-320 70-332 (494)
311 3ei3_A DNA damage-binding prot 97.9 0.013 4.3E-07 56.5 25.6 175 135-319 808-999 (1158)
312 4a0p_A LRP6, LRP-6, low-densit 97.8 0.019 6.5E-07 51.6 30.0 199 64-277 37-239 (628)
313 2xn4_A Kelch-like protein 2; s 97.8 0.01 3.4E-07 47.9 22.5 189 74-279 61-280 (302)
314 3ii7_A Kelch-like protein 7; p 97.8 0.011 3.6E-07 47.9 23.5 222 77-318 14-271 (306)
315 3ott_A Two-component system se 97.7 0.028 9.4E-07 51.9 28.7 229 63-318 21-259 (758)
316 2uvk_A YJHT; unknown function, 97.7 0.0055 1.9E-07 50.9 18.8 98 74-175 19-128 (357)
317 1zgk_A Kelch-like ECH-associat 97.7 0.013 4.3E-07 47.5 21.2 188 74-278 70-290 (308)
318 3das_A Putative oxidoreductase 97.7 0.015 5.1E-07 47.8 28.4 236 62-307 30-326 (347)
319 1tl2_A L10, protein (tachylect 97.7 0.0041 1.4E-07 47.0 15.4 181 124-321 4-210 (236)
320 1cru_A Protein (soluble quinop 97.7 0.02 7E-07 49.1 27.4 111 63-173 26-162 (454)
321 3ii7_A Kelch-like protein 7; p 97.6 0.016 5.5E-07 46.8 24.2 187 74-278 55-275 (306)
322 2xn4_A Kelch-like protein 2; s 97.6 0.02 6.7E-07 46.2 24.0 224 76-318 17-275 (302)
323 1tl2_A L10, protein (tachylect 97.6 0.0026 8.8E-08 48.0 13.0 143 113-269 41-204 (236)
324 2be1_A Serine/threonine-protei 97.5 0.0018 6.1E-08 52.9 12.7 115 76-195 11-140 (339)
325 3pbp_A Nucleoporin NUP82; beta 97.5 0.014 4.8E-07 48.8 17.8 116 64-181 66-208 (452)
326 3pbp_A Nucleoporin NUP82; beta 97.5 0.019 6.6E-07 48.0 18.4 152 163-321 29-214 (452)
327 1zgk_A Kelch-like ECH-associat 97.5 0.03 1E-06 45.3 22.3 226 74-318 24-286 (308)
328 3a9g_A Putative uncharacterize 97.4 0.045 1.6E-06 45.3 24.4 194 113-318 29-295 (354)
329 3das_A Putative oxidoreductase 97.3 0.042 1.4E-06 45.1 18.2 160 155-318 32-232 (347)
330 1xi4_A Clathrin heavy chain; a 97.2 0.071 2.4E-06 51.7 20.6 236 69-319 71-331 (1630)
331 2xzh_A Clathrin heavy chain 1; 97.2 0.064 2.2E-06 43.2 25.4 226 35-279 87-336 (365)
332 2uvk_A YJHT; unknown function, 97.1 0.079 2.7E-06 43.8 18.8 57 225-283 286-350 (357)
333 3ott_A Two-component system se 97.1 0.16 5.4E-06 46.9 26.7 233 64-314 373-622 (758)
334 4asc_A Kelch repeat and BTB do 97.1 0.077 2.6E-06 43.0 23.6 212 78-309 8-253 (315)
335 2g8s_A Glucose/sorbosone dehyd 97.1 0.094 3.2E-06 43.4 24.4 46 217-262 292-340 (353)
336 2wg3_C Hedgehog-interacting pr 97.1 0.12 4.3E-06 44.3 27.0 111 64-174 14-158 (463)
337 4asc_A Kelch repeat and BTB do 97.0 0.11 3.7E-06 42.1 21.4 191 71-279 42-281 (315)
338 1cru_A Protein (soluble quinop 96.9 0.18 6.2E-06 43.2 19.0 98 113-210 27-156 (454)
339 2woz_A Kelch repeat and BTB do 96.8 0.14 4.9E-06 41.4 21.4 196 71-279 53-291 (318)
340 2zwa_A Leucine carboxyl methyl 96.8 0.29 1E-05 44.6 23.2 231 73-309 396-675 (695)
341 3s25_A Hypothetical 7-bladed b 96.8 0.15 5.2E-06 41.0 21.7 213 69-320 58-292 (302)
342 3ei3_A DNA damage-binding prot 96.8 0.44 1.5E-05 46.1 33.9 247 4-274 374-635 (1158)
343 2be1_A Serine/threonine-protei 96.7 0.024 8.3E-07 46.3 11.6 141 126-272 12-181 (339)
344 2woz_A Kelch repeat and BTB do 96.6 0.21 7.3E-06 40.4 21.8 205 87-309 26-263 (318)
345 3sbq_A Nitrous-oxide reductase 96.4 0.083 2.8E-06 45.9 13.4 114 155-276 323-479 (638)
346 1bpo_A Protein (clathrin); cla 96.3 0.4 1.4E-05 40.4 27.8 227 34-279 85-335 (494)
347 2zwa_A Leucine carboxyl methyl 96.1 0.82 2.8E-05 41.7 23.5 108 74-187 451-579 (695)
348 3sbq_A Nitrous-oxide reductase 95.6 1.1 3.6E-05 39.2 23.1 241 77-319 72-408 (638)
349 4hvt_A Ritya.17583.B, post-pro 93.5 4.3 0.00015 37.0 19.7 200 116-318 132-378 (711)
350 1xi4_A Clathrin heavy chain; a 93.3 1.9 6.6E-05 42.3 13.8 161 21-190 165-336 (1630)
351 3qhy_B Beta-lactamase inhibito 93.2 2.6 8.9E-05 33.4 19.6 223 65-320 25-247 (282)
352 2wg3_C Hedgehog-interacting pr 92.9 4.1 0.00014 34.9 21.8 19 245-263 336-354 (463)
353 4gq2_M Nucleoporin NUP120; bet 89.4 15 0.0005 34.9 23.2 38 156-193 237-274 (950)
354 3b7f_A Glycosyl hydrolase, BNR 89.4 8.4 0.00029 32.0 23.6 145 63-209 54-243 (394)
355 3kci_A Probable E3 ubiquitin-p 87.5 11 0.00039 31.3 19.7 185 124-318 62-292 (389)
356 3qhy_B Beta-lactamase inhibito 87.3 9.4 0.00032 30.1 18.3 185 65-277 64-248 (282)
357 4fhn_B Nucleoporin NUP120; pro 87.2 23 0.00078 34.5 16.4 38 156-193 239-276 (1139)
358 1suu_A DNA gyrase subunit A; t 86.8 11 0.00037 30.3 27.1 196 73-275 6-231 (312)
359 3zwu_A Alkaline phosphatase PH 84.9 3 0.0001 36.9 7.7 59 247-306 478-548 (592)
360 3uc1_A DNA gyrase subunit A; D 84.5 15 0.0005 29.8 20.3 119 64-184 95-227 (327)
361 3q6k_A 43.2 kDa salivary prote 84.5 16 0.00056 30.3 18.8 169 135-307 124-342 (381)
362 3no0_A DNA gyrase subunit A; D 83.0 15 0.00053 28.8 20.6 196 113-318 24-245 (276)
363 4a9v_A PHOX; hydrolase, beta-p 81.9 6.8 0.00023 34.4 8.5 61 246-307 477-549 (592)
364 4hvt_A Ritya.17583.B, post-pro 81.2 32 0.0011 31.4 21.0 238 66-317 131-428 (711)
365 2zux_A YESW protein; beta-prop 80.4 30 0.001 30.4 22.4 187 86-282 152-407 (591)
366 3f7f_A Nucleoporin NUP120; nuc 79.8 17 0.00059 33.0 10.5 75 157-233 224-305 (729)
367 3zwu_A Alkaline phosphatase PH 78.1 8.5 0.00029 34.1 8.0 57 157-213 478-546 (592)
368 3kci_A Probable E3 ubiquitin-p 76.2 32 0.0011 28.5 26.2 240 66-320 55-346 (389)
369 3l6v_A GYRA, DNA gyrase subuni 76.1 32 0.0011 28.4 24.4 114 72-185 4-132 (370)
370 3q6k_A 43.2 kDa salivary prote 75.2 34 0.0012 28.4 18.3 140 177-319 124-306 (381)
371 3uc1_A DNA gyrase subunit A; D 75.0 32 0.0011 27.9 24.4 237 76-318 4-278 (327)
372 4a9v_A PHOX; hydrolase, beta-p 72.4 19 0.00066 31.7 8.6 61 199-263 477-549 (592)
373 3no0_A DNA gyrase subunit A; D 72.1 34 0.0012 26.9 23.3 196 64-275 24-246 (276)
374 4fhn_B Nucleoporin NUP120; pro 72.0 15 0.00052 35.7 8.8 36 114-149 239-274 (1139)
375 3f7f_A Nucleoporin NUP120; nuc 65.6 36 0.0012 30.9 9.1 34 114-149 223-256 (729)
376 1zi0_A DNA gyrase subunit A; b 62.1 59 0.002 25.9 27.0 241 73-318 1-276 (307)
377 4gq2_M Nucleoporin NUP120; bet 60.0 1.2E+02 0.0041 28.8 22.7 37 113-149 236-272 (950)
378 1wp5_A Topoisomerase IV; broke 59.7 67 0.0023 25.9 27.1 237 73-318 3-276 (323)
379 3b7f_A Glycosyl hydrolase, BNR 59.0 75 0.0026 26.2 25.2 184 76-272 23-259 (394)
380 2zuy_A YESX protein; beta-prop 56.3 1.1E+02 0.0037 27.2 20.5 99 176-283 296-412 (620)
381 1suu_A DNA gyrase subunit A; t 52.8 87 0.003 25.0 24.5 163 64-232 47-230 (312)
382 3mez_B Mannose-specific lectin 51.7 48 0.0016 21.7 11.1 10 201-210 59-68 (113)
383 1zi0_A DNA gyrase subunit A; b 51.2 92 0.0031 24.8 24.3 205 65-275 43-277 (307)
384 3al9_A Plexin-A2; beta-propell 49.3 59 0.002 28.5 7.6 67 247-313 402-475 (539)
385 1wp5_A Topoisomerase IV; broke 48.9 1E+02 0.0035 24.8 24.5 206 64-275 39-277 (323)
386 1q47_A Semaphorin 3A; beta pro 48.4 55 0.0019 28.3 7.2 74 65-138 405-487 (495)
387 1q47_A Semaphorin 3A; beta pro 44.9 63 0.0022 27.9 7.0 58 257-314 422-487 (495)
388 4gz8_A Semaphorin-3A; multi-do 44.6 45 0.0015 30.1 6.2 62 77-138 431-495 (667)
389 1sqj_A OXG-RCBH, oligoxylogluc 42.2 2.1E+02 0.0072 26.4 23.7 145 63-210 14-181 (789)
390 1zvt_A Topoisomerase IV subuni 40.1 1.3E+02 0.0043 23.2 13.8 119 65-185 34-163 (256)
391 1olz_A Semaphorin 4D; developm 38.7 2.2E+02 0.0076 25.7 10.2 69 246-314 398-477 (663)
392 1sqj_A OXG-RCBH, oligoxylogluc 38.4 2.4E+02 0.0083 26.0 23.4 110 64-175 64-190 (789)
393 3mez_B Mannose-specific lectin 37.4 85 0.0029 20.5 7.2 25 293-319 60-84 (113)
394 4gz8_A Semaphorin-3A; multi-do 36.6 1.1E+02 0.0036 27.8 7.3 56 258-313 431-494 (667)
395 3nvq_A Semaphorin-7A; beta-pro 32.1 1.4E+02 0.0048 26.5 7.2 58 257-314 381-444 (590)
396 3al9_A Plexin-A2; beta-propell 31.2 1.1E+02 0.0036 26.9 6.4 74 64-138 400-476 (539)
397 3nvq_A Semaphorin-7A; beta-pro 28.2 1.5E+02 0.0052 26.3 6.8 62 77-138 382-444 (590)
398 3oky_B Putative uncharacterize 26.5 2.5E+02 0.0086 24.8 7.7 69 246-314 404-495 (565)
399 3a0c_A Mannose/sialic acid-bin 23.6 1.5E+02 0.0052 19.0 12.0 13 248-260 85-97 (110)
400 3oky_A Plexin-A2; transmembran 21.8 2E+02 0.0068 26.1 6.4 58 257-314 413-475 (681)
401 3dzw_A Agglutinin; lectin, man 20.9 1.7E+02 0.006 18.7 10.9 9 202-210 53-61 (109)
402 3ol2_B Plexin-B1; beta-propell 20.5 1.9E+02 0.0066 25.2 5.9 57 257-314 401-461 (528)
403 1olz_A Semaphorin 4D; developm 20.1 2.6E+02 0.0087 25.3 6.8 70 65-138 398-477 (663)
404 1zvu_A Topoisomerase IV subuni 20.1 5E+02 0.017 23.7 10.8 74 111-185 552-633 (716)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.2e-50 Score=336.54 Aligned_cols=289 Identities=17% Similarity=0.188 Sum_probs=253.6
Q ss_pred CCceeEEeeeeecC-CCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEE
Q 019482 3 GGGTVTCGSWIKRP-ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81 (340)
Q Consensus 3 ~~~~v~~~~w~~~~-~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 81 (340)
+..+|++++|+|+. .+..++++|+ .|+.+++|++... .......+.+|...|.+++|+|++.+++++
T Consensus 31 H~~~V~~v~~~~~~~~~~~~l~tgs------~D~~v~vW~~~~~------~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~ 98 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKENSETVVTGS------LDDLVKVWKWRDE------RLDLQWSLEGHQLGVVSVDISHTLPIAASS 98 (321)
T ss_dssp SSSCEEEEEEC-------CEEEEEE------TTSCEEEEEEETT------EEEEEEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred CCCcEEEEEEecCCCCCCCEEEEEc------CCCCEEEEECCCC------CeeeeeeeccCCCCEEEEEECCCCCEEEEE
Confidence 56899999999853 2346777766 5666999998632 123445689999999999999999999999
Q ss_pred ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEE
Q 019482 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (340)
Q Consensus 82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~ 161 (340)
+.|+.|++||+.+++....+.. +...+.+++|+|++++|++++.||.|++|++++++....+..+...+.+++
T Consensus 99 s~D~~i~lWd~~~~~~~~~~~~-------~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~ 171 (321)
T 3ow8_A 99 SLDAHIRLWDLENGKQIKSIDA-------GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIA 171 (321)
T ss_dssp ETTSEEEEEETTTTEEEEEEEC-------CTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEE
T ss_pred eCCCcEEEEECCCCCEEEEEeC-------CCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEE
Confidence 9999999999998887665543 556788999999999999999999999999999998888878888999999
Q ss_pred ecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee
Q 019482 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (340)
Q Consensus 162 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 241 (340)
|+|++++|++++.|+.|++||+++++.+..+.. +...|.+++|+|+++. +++++.|+.|++||+++++.+..+.
T Consensus 172 ~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~spd~~~-----l~s~s~dg~i~iwd~~~~~~~~~~~ 245 (321)
T 3ow8_A 172 YSPDGKYLASGAIDGIINIFDIATGKLLHTLEG-HAMPIRSLTFSPDSQL-----LVTASDDGYIKIYDVQHANLAGTLS 245 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCCCEEEECTTSCE-----EEEECTTSCEEEEETTTCCEEEEEC
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc-cCCceeEEEEcCCCCE-----EEEEcCCCeEEEEECCCcceeEEEc
Confidence 999999999999999999999999999888874 4568999999999997 7899999999999999999999999
Q ss_pred ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 242 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
.|...|.+++|+|++++|++++.|+.|++||+.+++++..+. .| ...|.+++|+|++++|++++.||.|++|+++
T Consensus 246 ~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~h-~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 246 GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF-DH-QDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CC-SSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc-CC-CCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999999999999999999999888764 56 5799999999999999999999999999974
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.5e-50 Score=345.17 Aligned_cols=288 Identities=13% Similarity=0.111 Sum_probs=252.5
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
+..+|+|++|+| +..++++|+ .|+.|++|++. +......+.+|.+.|.+++|+|++++|++|+
T Consensus 107 h~~~V~~~~~~p---~~~~l~s~s------~Dg~i~vwd~~--------~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs 169 (410)
T 1vyh_C 107 HRSPVTRVIFHP---VFSVMVSAS------EDATIKVWDYE--------TGDFERTLKGHTDSVQDISFDHSGKLLASCS 169 (410)
T ss_dssp CSSCEEEEEECS---SSSEEEEEE------SSSCEEEEETT--------TCCCCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred cCCcEEEEEEcC---CCCEEEEEe------CCCeEEEEECC--------CCcEEEEEeccCCcEEEEEEcCCCCEEEEEe
Confidence 457899999999 445677666 56679999987 3344567889999999999999999999999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 162 (340)
.|++|++||+.+.+....+. .|...|.+++|+|++++|++|+.|++|++||++++..+..+.+|...|.++.|
T Consensus 170 ~D~~i~iwd~~~~~~~~~~~-------~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~ 242 (410)
T 1vyh_C 170 ADMTIKLWDFQGFECIRTMH-------GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 242 (410)
T ss_dssp TTSCCCEEETTSSCEEECCC-------CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred CCCeEEEEeCCCCceeEEEc-------CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEE
Confidence 99999999998877655443 37789999999999999999999999999999999998888889889999999
Q ss_pred cCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcce---------------EEEEEecCCcceEE
Q 019482 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF---------------LFCTVQRGDKALLA 227 (340)
Q Consensus 163 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------~~~~~~~~~d~~i~ 227 (340)
+|++++|++|+.|++|++||++++++...+.. +...|.+++|+|++.+.. -..+++++.|+.|+
T Consensus 243 ~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~ 321 (410)
T 1vyh_C 243 NQDGTLIASCSNDQTVRVWVVATKECKAELRE-HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321 (410)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCceeeEecC-CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEE
Confidence 99999999999999999999999998888864 456899999999732100 00178899999999
Q ss_pred EEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEe
Q 019482 228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS 307 (340)
Q Consensus 228 i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 307 (340)
+||+++++++..+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+ ..| ...|++++|+|++++|++|+
T Consensus 322 iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~-~~h-~~~v~~l~~~~~~~~l~sgs 399 (410)
T 1vyh_C 322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-NAH-EHFVTSLDFHKTAPYVVTGS 399 (410)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE-ECC-SSCEEEEEECSSSSCEEEEE
T ss_pred EEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE-cCC-CCcEEEEEEcCCCCEEEEEe
Confidence 9999999999999999999999999999999999999999999999998887766 456 57899999999999999999
Q ss_pred cCCcEEEEEe
Q 019482 308 KEWGAMITKL 317 (340)
Q Consensus 308 ~dg~i~iw~~ 317 (340)
.||.|++|++
T Consensus 400 ~D~~i~vW~~ 409 (410)
T 1vyh_C 400 VDQTVKVWEC 409 (410)
T ss_dssp TTSEEEEEC-
T ss_pred CCCcEEEEeC
Confidence 9999999986
No 3
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.2e-48 Score=329.43 Aligned_cols=302 Identities=13% Similarity=0.122 Sum_probs=239.2
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
+...|.|++|+| ++.+|++|+.....--++.+++|+...... .........+|...|.+++|+|++. +++++
T Consensus 41 H~~~V~~v~fSp---DG~~las~s~d~~~~wd~~v~~~~~~~~~~----~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s 112 (357)
T 4g56_B 41 MEVQIGAVRYRR---DGALLLAASSLSSRTWGGSIWVFKDPEGAP----NESLCTAGVQTEAGVTDVAWVSEKG-ILVAS 112 (357)
T ss_dssp CCSEEEEEEECS---SSCEEEEEECSSSSSCCEEEEEESSCC-------CGGGCSEEEECSSCEEEEEEETTTE-EEEEE
T ss_pred ccCCEEEEEECC---CCCEEEEEcCCCCccccCeEEEEECCCCCc----ceeEecccCCCCCCEEEEEEcCCCC-EEEEE
Confidence 356799999999 567888877544322366777776542221 1122234557899999999999985 55678
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 162 (340)
.||.|+|||+.+++....... ....|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|...|.+++|
T Consensus 113 ~dg~v~lWd~~~~~~~~~~~~---~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~ 189 (357)
T 4g56_B 113 DSGAVELWEILEKESLLVNKF---AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAA 189 (357)
T ss_dssp TTSCEEEC--------CCCCE---EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred CCCEEEEeeccccceeEEEee---ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 899999999987764332211 11247899999999999999999999999999999999999888889899999999
Q ss_pred cCCCC-eEEEeeCCCeEEEEEccCCeeEEEeec-CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee
Q 019482 163 SLDSE-FLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (340)
Q Consensus 163 ~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 240 (340)
+|++. ++++++.|++|++||++++++...+.. .+...+.+++|+|++..+ +++++.|+.|++||+++++.+..+
T Consensus 190 s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~----la~g~~d~~i~~wd~~~~~~~~~~ 265 (357)
T 4g56_B 190 CPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDT----FACGDETGNVSLVNIKNPDSAQTS 265 (357)
T ss_dssp CTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTE----EEEEESSSCEEEEESSCGGGCEEE
T ss_pred ccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccce----EEEeecccceeEEECCCCcEeEEE
Confidence 99875 789999999999999999887766542 345679999999987652 677889999999999999999999
Q ss_pred eccCCCeeEEEECCCC-CEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEec-CCeEEEEEecCCcEEEEEec
Q 019482 241 RLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP-TQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 241 ~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iw~~~ 318 (340)
..+...|++++|+|++ ++|++|+.|+.|+|||+++++.+..+ .| ...|++++|+| |+++|++++.||.|++|+++
T Consensus 266 ~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~--~H-~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 266 AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL--SH-RDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC--CC-SSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC--CC-CCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 9999999999999987 68999999999999999999887754 56 67999999998 78999999999999999997
Q ss_pred CCCC
Q 019482 319 VPAD 322 (340)
Q Consensus 319 ~~~~ 322 (340)
.+..
T Consensus 343 ~~~~ 346 (357)
T 4g56_B 343 SEGR 346 (357)
T ss_dssp ----
T ss_pred CCCc
Confidence 6553
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.4e-47 Score=321.21 Aligned_cols=285 Identities=16% Similarity=0.179 Sum_probs=244.2
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
+..+|++++|+| +..++++|+ .|+.|++|+.. .......+..|...|.+++|+|++++|++++
T Consensus 54 H~~~v~~~~~s~---d~~~l~s~s------~Dg~v~iWd~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 116 (340)
T 1got_B 54 HLAKIYAMHWGT---DSRLLLSAS------QDGKLIIWDSY--------TTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116 (340)
T ss_dssp CSSCEEEEEECT---TSSEEEEEE------TTTEEEEEETT--------TCCEEEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred CCCceEEEEECC---CCCEEEEEe------CCCcEEEEECC--------CCCcceEeecCCccEEEEEECCCCCEEEEEe
Confidence 467899999999 445677666 56679999976 3444567788999999999999999999999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 162 (340)
.|+.+++|++.+.......... ...|.+.|.++.|++++. +++++.|+.|++||+++++....+.+|...|.+++|
T Consensus 117 ~d~~v~iw~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~ 192 (340)
T 1got_B 117 LDNICSIYNLKTREGNVRVSRE---LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL 192 (340)
T ss_dssp TTCEEEEEETTTCSBSCEEEEE---EECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred CCCeEEEEECccCCCcceeEEE---ecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEE
Confidence 9999999999765421111110 113778999999998874 889999999999999999998888889899999999
Q ss_pred cCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec
Q 019482 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (340)
Q Consensus 163 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 242 (340)
+|+++++++|+.|++|++||+++++++..+.. +...|.+++|+|++.. +++++.|+.|++||+++++.+..+..
T Consensus 193 ~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~-h~~~v~~v~~~p~~~~-----l~s~s~d~~v~iwd~~~~~~~~~~~~ 266 (340)
T 1got_B 193 APDTRLFVSGACDASAKLWDVREGMCRQTFTG-HESDINAICFFPNGNA-----FATGSDDATCRLFDLRADQELMTYSH 266 (340)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCSEEEEECC-CSSCEEEEEECTTSSE-----EEEEETTSCEEEEETTTTEEEEEECC
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC-CcCCEEEEEEcCCCCE-----EEEEcCCCcEEEEECCCCcEEEEEcc
Confidence 99999999999999999999999998888875 4568999999999987 78999999999999999887665543
Q ss_pred c--CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482 243 L--RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK 316 (340)
Q Consensus 243 ~--~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~ 316 (340)
. ...+.+++|+|+|++|++|+.|+.|++||+.+++....+ .+| ..+|.+++|+|++++|++|+.|+.|+||+
T Consensus 267 ~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~-~~h-~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL-AGH-DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECC-SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe-ecC-CCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 2 247999999999999999999999999999998887765 466 57999999999999999999999999996
No 5
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.1e-47 Score=321.11 Aligned_cols=295 Identities=11% Similarity=0.082 Sum_probs=234.1
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEE-----eCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeE
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFS-----FDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF 78 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~-----~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 78 (340)
...|.+++|+| ++.+++.++ +.++++|+ ++...... ..........|...|.+++|+|++ .|
T Consensus 30 ~~~v~~~~fs~---dG~~l~~~s-------d~~~r~Wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~d~-~l 96 (344)
T 4gqb_B 30 ERQLEAARYRS---DGALLLGAS-------SLSGRCWAGSLWLFKDPCAAP--NEGFCSAGVQTEAGVADLTWVGER-GI 96 (344)
T ss_dssp CSEEEEEEECT---TSCEEEEEE-------CCSSSCCCEEEEEESSGGGTT--CGGGCSEEEEESSCEEEEEEETTT-EE
T ss_pred cCCEEEEEECC---CCCEEEEEe-------CCceEEeeceeeeeccccccC--CcceeeeeeccCCCEEEEEEeCCC-eE
Confidence 35699999999 556777443 33344443 22111100 111112233467889999999985 68
Q ss_pred EEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCcccee
Q 019482 79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL 158 (340)
Q Consensus 79 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~ 158 (340)
++++.||.|+|||+.+++........ ...|.+.|.+++|+|++++|++|+.|++|++||+++++.+..+.+|...|.
T Consensus 97 ~~~s~dg~v~lWd~~~~~~~~~~~~~---~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~ 173 (344)
T 4gqb_B 97 LVASDSGAVELWELDENETLIVSKFC---KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT 173 (344)
T ss_dssp EEEETTSEEEEEEECTTSSCEEEEEE---EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEECCCEEEEEeccCCCceeEeecc---ccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence 89999999999999987654333211 114889999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCC-eEEEeeCCCeEEEEEccCCeeEEEeec-CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE
Q 019482 159 DMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (340)
Q Consensus 159 ~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 236 (340)
+++|+|++. +|++++.|++|++||++++++...+.. .+...+.+++|+|++..+ +++++.|+.|++||++++++
T Consensus 174 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----l~sg~~dg~v~~wd~~~~~~ 249 (344)
T 4gqb_B 174 CVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEV----FVFGDENGTVSLVDTKSTSC 249 (344)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTE----EEEEETTSEEEEEESCC--C
T ss_pred EEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcc----eEEeccCCcEEEEECCCCcE
Confidence 999999875 689999999999999999998887753 334568999999976652 57788999999999999999
Q ss_pred EeeeeccCCCeeEEEECCCC-CEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCe-EEEEEecCCcEEE
Q 019482 237 IGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTASKEWGAMI 314 (340)
Q Consensus 237 ~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i 314 (340)
+..+..|...|++++|+|++ ++|++|+.|+.|+|||+++++.... .+| ...|++++|+|+++ +|+++|.|+.|++
T Consensus 250 ~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~--~~H-~~~V~~v~~sp~~~~llas~s~D~~v~~ 326 (344)
T 4gqb_B 250 VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS--QAH-RDFVRDATWSPLNHSLLTTVGWDHQVVH 326 (344)
T ss_dssp CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE--CCC-SSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE--cCC-CCCEEEEEEeCCCCeEEEEEcCCCeEEE
Confidence 99999999999999999998 6899999999999999999987653 467 67999999999985 6779999999999
Q ss_pred EEecCCC
Q 019482 315 TKLTVPA 321 (340)
Q Consensus 315 w~~~~~~ 321 (340)
|+++...
T Consensus 327 w~v~~~~ 333 (344)
T 4gqb_B 327 HVVPTEP 333 (344)
T ss_dssp EECCC--
T ss_pred EECCCCC
Confidence 9997543
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.7e-47 Score=314.46 Aligned_cols=283 Identities=11% Similarity=0.143 Sum_probs=244.1
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
..+|++++|+|+ ..++++|+ .++.+++|++. +......+.+|...|.+++|+|++++|++|+.
T Consensus 13 ~~~V~~~~fsp~---~~~l~s~~------~dg~v~lWd~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~ 75 (304)
T 2ynn_A 13 SDRVKGIDFHPT---EPWVLTTL------YSGRVELWNYE--------TQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75 (304)
T ss_dssp CSCEEEEEECSS---SSEEEEEE------TTSEEEEEETT--------TTEEEEEEECCSSCEEEEEEEGGGTEEEEEET
T ss_pred CCceEEEEECCC---CCEEEEEc------CCCcEEEEECC--------CCceeEEeeccCCcEEEEEEeCCCCEEEEECC
Confidence 578999999994 45677665 56679999987 45556778899999999999999999999999
Q ss_pred CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc-eeeccccCccceeEEEe
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMDF 162 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~i~~~~~ 162 (340)
|+.|++||+.+++....+.. |...|.+++|+|++++|++|+.|++|++||++++. ....+.+|...|.+++|
T Consensus 76 d~~i~vwd~~~~~~~~~~~~-------h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~ 148 (304)
T 2ynn_A 76 DFRIRVFNYNTGEKVVDFEA-------HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148 (304)
T ss_dssp TSEEEEEETTTCCEEEEEEC-------CSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEE
T ss_pred CCEEEEEECCCCcEEEEEeC-------CCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEE
Confidence 99999999998887665543 78899999999999999999999999999998774 44556678889999999
Q ss_pred cC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEcc--CCCcceEEEEEecCCcceEEEEECCCCcEEee
Q 019482 163 SL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK--DGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (340)
Q Consensus 163 ~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~ 239 (340)
+| ++.+|++|+.|++|++||++++.....+..++...+..+.|+| ++.+ +++++.|+.|++||+++++++..
T Consensus 149 ~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----l~s~s~D~~i~iWd~~~~~~~~~ 223 (304)
T 2ynn_A 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY-----MITASDDLTIKIWDYQTKSCVAT 223 (304)
T ss_dssp CTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCE-----EEEEETTSEEEEEETTTTEEEEE
T ss_pred CCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCE-----EEEEcCCCeEEEEeCCCCcccee
Confidence 99 6789999999999999999988877777766667799999987 4554 78999999999999999999999
Q ss_pred eeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCe--EEEEEecCCcEEEEEe
Q 019482 240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR--VVLTASKEWGAMITKL 317 (340)
Q Consensus 240 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~iw~~ 317 (340)
+..|...|.+++|+|++++|++|+.||.|++||+++++.+..+. .| ...+.+++|+|++. ++++|+.| .+.+|++
T Consensus 224 ~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~ 300 (304)
T 2ynn_A 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN-VG-LERSWCIATHPTGRKNYIASGFDN-GFTVLSL 300 (304)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-CS-SSSEEEEEECTTCGGGCEEEEETT-EEEEEEC
T ss_pred eCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeecc-CC-CccEEEEEECCCCCceEEEEecCC-ceEEEEe
Confidence 99999999999999999999999999999999999999887764 44 46899999999875 57777655 5677776
Q ss_pred c
Q 019482 318 T 318 (340)
Q Consensus 318 ~ 318 (340)
.
T Consensus 301 ~ 301 (304)
T 2ynn_A 301 G 301 (304)
T ss_dssp C
T ss_pred c
Confidence 4
No 7
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.1e-47 Score=342.82 Aligned_cols=313 Identities=17% Similarity=0.250 Sum_probs=248.7
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
+..+|.+++|+|+.. ..+++|+ .|+.+++|+.. .......+.+|.+.|++++|+|+|++|++++
T Consensus 146 h~~~v~~v~f~p~~~--~~l~s~s------~D~~v~lwd~~--------~~~~~~~l~~H~~~V~~v~fspdg~~las~s 209 (611)
T 1nr0_A 146 QARAMNSVDFKPSRP--FRIISGS------DDNTVAIFEGP--------PFKFKSTFGEHTKFVHSVRYNPDGSLFASTG 209 (611)
T ss_dssp CSSCEEEEEECSSSS--CEEEEEE------TTSCEEEEETT--------TBEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCceEEEECCCCC--eEEEEEe------CCCeEEEEECC--------CCeEeeeeccccCceEEEEECCCCCEEEEEE
Confidence 356899999999543 3466555 56779999865 3455667899999999999999999999999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeec-------------
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD------------- 149 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~------------- 149 (340)
.|+.|++||+.+++....+.........|.+.|.+++|+|++++|++++.|++|++||+++++....
T Consensus 210 ~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~ 289 (611)
T 1nr0_A 210 GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLG 289 (611)
T ss_dssp TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEE
T ss_pred CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEE
Confidence 9999999999887765544322222235889999999999999999999999999999987654322
Q ss_pred ------------------------------cccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecC----
Q 019482 150 ------------------------------EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN---- 195 (340)
Q Consensus 150 ------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---- 195 (340)
+.+|...|.+++|+|++++|++++.|++|++||+++++....+...
T Consensus 290 ~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~ 369 (611)
T 1nr0_A 290 IIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATM 369 (611)
T ss_dssp EEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSC
T ss_pred EEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcce
Confidence 2356678999999999999999999999999999876543321000
Q ss_pred -----------------------------------------------------------------------------CCC
Q 019482 196 -----------------------------------------------------------------------------SDE 198 (340)
Q Consensus 196 -----------------------------------------------------------------------------~~~ 198 (340)
+..
T Consensus 370 v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~ 449 (611)
T 1nr0_A 370 ITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISY 449 (611)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSS
T ss_pred EEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCC
Confidence 112
Q ss_pred ceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE--EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC-
Q 019482 199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK- 275 (340)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~- 275 (340)
.+.+++|+|+++. +++++.|+.|++||+.++.. +.. ..|...|++++|+|+|++|++++.|+.|++||+.+
T Consensus 450 ~v~~va~spdg~~-----lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~ 523 (611)
T 1nr0_A 450 NSSCVALSNDKQF-----VAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN 523 (611)
T ss_dssp CEEEEEECTTSCE-----EEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGT
T ss_pred CceEEEEeCCCCE-----EEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCC
Confidence 3567889999987 78999999999999987653 233 67888999999999999999999999999999988
Q ss_pred ceEeec-ccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCcccccc-ccccccC
Q 019482 276 MEINHW-SKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLH-SHSQNSV 339 (340)
Q Consensus 276 ~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h-~~~v~~v 339 (340)
++.... ....| ...|.+++|+|||++|++++.|+.|++|+++.+... .......| ...|.+|
T Consensus 524 ~~~~~~~~~~~H-~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~-~~~~~~~h~~~~v~~v 587 (611)
T 1nr0_A 524 FELAHTNSWTFH-TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH-PIIIKGAHAMSSVNSV 587 (611)
T ss_dssp TEESCCCCCCCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC-CEEETTSSTTSCEEEE
T ss_pred Cceeeeeeeeec-ccceeEEEECCCCCEEEEEECCCcEEEEECCCcccc-cchhhccCcccCeeEE
Confidence 666544 22336 679999999999999999999999999999765531 11445677 6777665
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.4e-46 Score=316.53 Aligned_cols=288 Identities=17% Similarity=0.186 Sum_probs=243.3
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
+..+|+|++|+|+ ..++++|+ .|+.+++|+.. +......+..|...|.+++|+|+|.+|++++
T Consensus 63 H~~~V~~~~~s~d---~~~l~s~s------~Dg~v~vWd~~--------~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~ 125 (354)
T 2pbi_B 63 HGNKVLCMDWCKD---KRRIVSSS------QDGKVIVWDSF--------TTNKEHAVTMPCTWVMACAYAPSGCAIACGG 125 (354)
T ss_dssp CSSCEEEEEECTT---SSEEEEEE------TTSEEEEEETT--------TCCEEEEEECSSSCCCEEEECTTSSEEEEES
T ss_pred CCCeEEEEEECCC---CCEEEEEe------CCCeEEEEECC--------CCCcceEEecCCCCEEEEEECCCCCEEEEee
Confidence 4678999999994 45677666 56779999876 3344566778999999999999999999999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 162 (340)
.|+.+++|++......... ........|...|.+++|+|++..|++++.|++|++||+++++.+..+.+|...|.+++|
T Consensus 126 ~d~~i~v~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~ 204 (354)
T 2pbi_B 126 LDNKCSVYPLTFDKNENMA-AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDL 204 (354)
T ss_dssp TTSEEEEEECCCCTTCCSG-GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred CCCCEEEEEEecccccccc-ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEE
Confidence 9999999998653211100 000001137889999999999999999999999999999999999888889889999999
Q ss_pred cC--CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee
Q 019482 163 SL--DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (340)
Q Consensus 163 ~~--~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 240 (340)
+| ++++|++|+.|++|++||+++++++..+.. +...|.+++|+|++.. +++++.|+.|++||++..+.+..+
T Consensus 205 ~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~-h~~~v~~v~~~p~~~~-----l~s~s~D~~v~lwd~~~~~~~~~~ 278 (354)
T 2pbi_B 205 APSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET-HESDVNSVRYYPSGDA-----FASGSDDATCRLYDLRADREVAIY 278 (354)
T ss_dssp CCCSSCCEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSE-----EEEEETTSCEEEEETTTTEEEEEE
T ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCCCeEEEEEeCCCCE-----EEEEeCCCeEEEEECCCCcEEEEE
Confidence 87 568999999999999999999999888864 4568999999999987 789999999999999998776555
Q ss_pred ecc--CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482 241 RLL--RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK 316 (340)
Q Consensus 241 ~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~ 316 (340)
..+ ...+.+++|+|++++|++|+.|+.|++||+.+++.+..+ .+| ...|++++|+|||++|++|+.||.|+||+
T Consensus 279 ~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l-~~h-~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 279 SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL-FGH-ENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE-CCC-SSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE-ECC-CCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 433 346889999999999999999999999999998877665 466 67999999999999999999999999995
No 9
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3e-47 Score=323.89 Aligned_cols=294 Identities=17% Similarity=0.191 Sum_probs=242.2
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
+.++|+|++|+|+ ..++++|+ .|+.|++|+.. +......+..|...|.+++|+|+|++|++++
T Consensus 65 H~~~V~~~~~sp~---~~~l~s~s------~D~~v~iWd~~--------~~~~~~~~~~h~~~v~~~~~s~~g~~las~~ 127 (380)
T 3iz6_a 65 HSGKVYSLDWTPE---KNWIVSAS------QDGRLIVWNAL--------TSQKTHAIKLHCPWVMECAFAPNGQSVACGG 127 (380)
T ss_dssp CSSCEEEEEECTT---SSCEEEEE------TTSEEEEEETT--------TTEEEEEEECCCTTCCCCEECTTSSEEEECC
T ss_pred cccEEEEEEEcCC---CCEEEEEe------CCCeEEEEECC--------CCccceEEecCCCCEEEEEECCCCCEEEEee
Confidence 4689999999994 45677665 56779999986 4556677899999999999999999999999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeCCCCceeecc-----ccCccc
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDE-----PKAHKS 156 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~-----~~~~~~ 156 (340)
.|+.+++|++.+................|.+.|.++.|+|+ +..|++|+.|++|++||+++++.+..+ .+|...
T Consensus 128 ~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~ 207 (380)
T 3iz6_a 128 LDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTAD 207 (380)
T ss_dssp SSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSC
T ss_pred CCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccC
Confidence 99999999997543211111111112347889999999996 457999999999999999998877654 456678
Q ss_pred eeEEEecC-CCCeEEEeeCCCeEEEEEccC-CeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC
Q 019482 157 VLDMDFSL-DSEFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234 (340)
Q Consensus 157 i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 234 (340)
|.++.|+| ++++|++|+.|++|++||++. ++.+..+. .|...|.+++|+|++.. +++++.|+.|++||++++
T Consensus 208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~-----l~s~s~D~~i~lwd~~~~ 281 (380)
T 3iz6_a 208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH-GHEGDINSVKFFPDGQR-----FGTGSDDGTCRLFDMRTG 281 (380)
T ss_dssp EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC-CCSSCCCEEEECTTSSE-----EEEECSSSCEEEEETTTT
T ss_pred eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC-CcCCCeEEEEEecCCCe-----EEEEcCCCeEEEEECCCC
Confidence 99999987 889999999999999999984 45666665 45678999999999997 899999999999999999
Q ss_pred cEEeeeeccC-------CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc---ccccccceeeEEEecCCeEEE
Q 019482 235 NKIGHKRLLR-------KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK---RLHLGTSIALVEFCPTQRVVL 304 (340)
Q Consensus 235 ~~~~~~~~~~-------~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~ 304 (340)
+.+..+..+. ..+++++|+|+|++|++|+.||.|++||+.+++....+. ..| ...|++++|+|||++|+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~ 360 (380)
T 3iz6_a 282 HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH-EGRISCLGLSSDGSALC 360 (380)
T ss_dssp EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSC-CCCCCEEEECSSSSEEE
T ss_pred cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCC-CCceEEEEECCCCCEEE
Confidence 8877665432 248999999999999999999999999998887665442 356 67999999999999999
Q ss_pred EEecCCcEEEEEecCC
Q 019482 305 TASKEWGAMITKLTVP 320 (340)
Q Consensus 305 ~~~~dg~i~iw~~~~~ 320 (340)
+|+.||.|+||++...
T Consensus 361 sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 361 TGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EECTTSCEEEEECCSS
T ss_pred EeeCCCCEEEEecCCC
Confidence 9999999999998643
No 10
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.4e-47 Score=312.21 Aligned_cols=253 Identities=12% Similarity=0.130 Sum_probs=222.2
Q ss_pred eeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC
Q 019482 55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (340)
Q Consensus 55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 134 (340)
...++.+|.+.|.+++|+|++++|++++.||.|++||+.++.....+.. |..+|.+++|+|++++|++|+.|+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~s~s~d~ 77 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQV-------TETPVRAGKFIARKNWIIVGSDDF 77 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC-------CSSCEEEEEEEGGGTEEEEEETTS
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeec-------cCCcEEEEEEeCCCCEEEEECCCC
Confidence 3467899999999999999999999999999999999998876655543 668999999999999999999999
Q ss_pred cEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccC-CCcce
Q 019482 135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD-GTKPF 213 (340)
Q Consensus 135 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~ 213 (340)
.|++||+.+++.+..+..|...|.+++|+|++++|++|+.|++|++||++++.........|...|.+++|+|+ +..
T Consensus 78 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~-- 155 (304)
T 2ynn_A 78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST-- 155 (304)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTE--
T ss_pred EEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCE--
Confidence 99999999999998898999999999999999999999999999999999875554444456678999999995 554
Q ss_pred EEEEEecCCcceEEEEECCCCcEEeeee-ccCCCeeEEEECC--CCCEEEEeeCCCcEEEEeccCceEeecccccccccc
Q 019482 214 LFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS 290 (340)
Q Consensus 214 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 290 (340)
+++++.|+.|++||+++......+. .+...+..+.|+| ++.+|++++.|+.|++||+++++++..+ .+| ...
T Consensus 156 ---l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~-~~h-~~~ 230 (304)
T 2ynn_A 156 ---FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGH-MSN 230 (304)
T ss_dssp ---EEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE-ECC-SSC
T ss_pred ---EEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee-CCC-CCC
Confidence 7899999999999998877655544 4557889999987 7789999999999999999999988776 456 579
Q ss_pred eeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 291 IALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 291 i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
|..++|+|++++|++++.||.|++|++....
T Consensus 231 v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 9999999999999999999999999986543
No 11
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2e-47 Score=322.82 Aligned_cols=303 Identities=18% Similarity=0.240 Sum_probs=235.6
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCC-cccCCCceEEEEeCCCCCCccc--CCeeeEEEecCCCCeeEEEEcCCCCeEEE
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSR-ASSSPSVLEIFSFDPKTTSVYT--SPLVTYVFDESEGDPMTIAVNPSGDDFVC 80 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~-~~~~~~~i~i~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 80 (340)
++||+|++|+| ++.+|++|++.. ..+.+|.|++|+++........ .......+.+|...|.+++++ ++.+++
T Consensus 14 g~PV~sv~fs~---dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~ 88 (365)
T 4h5i_A 14 GYPAYGAKFLN---NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILV 88 (365)
T ss_dssp SSCEEEEEEEE---TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEE
T ss_pred CCCEEEEEEeC---CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEE
Confidence 68999999999 556788876544 3567899999999866544322 223445678899999998875 455665
Q ss_pred E-----------ecCCCEEEEEecCceeeeeeccc--cCCCCCCCCCeEEEEEecCCCeEEE--ccCCCcEEEEeCCCCc
Q 019482 81 S-----------TTNGGCKLFEVYGGATDINLLAK--KMPPLQDAGPQKCLSFSVDGSRFAA--GGVDGHLRIMHWPSLR 145 (340)
Q Consensus 81 ~-----------~~d~~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~~~d~~~~~ 145 (340)
+ +.|+.+++|++............ ......+...+.+++|+|||+++++ ++.|++|++||+++++
T Consensus 89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~ 168 (365)
T 4h5i_A 89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT 168 (365)
T ss_dssp ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE
T ss_pred EECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc
Confidence 4 45778999998765432222111 1112234567899999999998764 5578999999999998
Q ss_pred eeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEE-eecCCCCceeeEEEccCCCcceEEEEEecCCcc
Q 019482 146 IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF-LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA 224 (340)
Q Consensus 146 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~ 224 (340)
.+..+ .|+..|.+++|+|||+++++++. +.+++|+..+++.+.. ....+...+.+++|+|+++. +++++.++
T Consensus 169 ~~~~~-~~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~-----l~~~s~d~ 241 (365)
T 4h5i_A 169 EKFEI-ETRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTV-----LIAASLKK 241 (365)
T ss_dssp EEEEE-ECSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEE-----EEEEEESS
T ss_pred EEEEe-CCCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCE-----EEEEecCC
Confidence 88766 46778999999999999999985 5677777777766543 33445668999999999987 45554444
Q ss_pred ----eEEEEECCCCcE----EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEE
Q 019482 225 ----LLAVYDISTWNK----IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF 296 (340)
Q Consensus 225 ----~i~i~d~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~ 296 (340)
.+++||+..... ...+..+...|++++|+|||++||+|+.|+.|+|||+++++++..+..+| ..+|++++|
T Consensus 242 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH-~~~V~~v~f 320 (365)
T 4h5i_A 242 GKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH-SFAITEVTI 320 (365)
T ss_dssp SCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS-SSCEEEEEE
T ss_pred cceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc-cCCEEEEEE
Confidence 688999877653 34566788899999999999999999999999999999999988776778 689999999
Q ss_pred ecCCeEEEEEecCCcEEEEEecC
Q 019482 297 CPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 297 ~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
+|||++||+||.|++|+||+++.
T Consensus 321 Spdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 321 SPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp CTTSCEEEEEETTSEEEEEECCT
T ss_pred CCCCCEEEEEeCCCeEEEEEcCC
Confidence 99999999999999999999963
No 12
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7.3e-46 Score=307.89 Aligned_cols=289 Identities=11% Similarity=0.092 Sum_probs=243.9
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
+.++|++++|+|... .++++|+ .|+.+++|++...... .......+.+|...|.+++|+|++++|++++
T Consensus 16 H~~~V~~l~~~~~~~--~~l~s~s------~D~~v~~W~~~~~~~~---~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s 84 (319)
T 3frx_A 16 HNGWVTSLATSAGQP--NLLLSAS------RDKTLISWKLTGDDQK---FGVPVRSFKGHSHIVQDCTLTADGAYALSAS 84 (319)
T ss_dssp CSSCEEEEEECSSCT--TEEEEEE------TTSEEEEEEEEEETTE---EEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ccceEEEEEccCCCc--cEEEEec------CCccEEEecCCCCCcc---ccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence 468899999998543 5677666 5667999998633221 1234567899999999999999999999999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 162 (340)
.|++|++||+.+++....+.. |...|.+++|+|++++|++++.|++|++||++ ++.+..+.+|...|.++.|
T Consensus 85 ~D~~v~~wd~~~~~~~~~~~~-------h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~ 156 (319)
T 3frx_A 85 WDKTLRLWDVATGETYQRFVG-------HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRV 156 (319)
T ss_dssp TTSEEEEEETTTTEEEEEEEC-------CSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEE
T ss_pred CCCEEEEEECCCCCeeEEEcc-------CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEE
Confidence 999999999999887665543 78899999999999999999999999999986 4566677788889999999
Q ss_pred cCC------CCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE
Q 019482 163 SLD------SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (340)
Q Consensus 163 ~~~------~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 236 (340)
+|. +..+++++.|+.|++||+++.+....+.. |...|.+++|+|+++. +++++.|+.|++||+++++.
T Consensus 157 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~sp~g~~-----l~s~~~dg~i~iwd~~~~~~ 230 (319)
T 3frx_A 157 VPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG-HNSNINTLTASPDGTL-----IASAGKDGEIMLWNLAAKKA 230 (319)
T ss_dssp CCC------CCEEEEEETTSCEEEEETTTTEEEEEECC-CCSCEEEEEECTTSSE-----EEEEETTCEEEEEETTTTEE
T ss_pred ccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecC-CCCcEEEEEEcCCCCE-----EEEEeCCCeEEEEECCCCcE
Confidence 985 44899999999999999999988887765 4568999999999997 78999999999999999998
Q ss_pred EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccc-------cccccceeeEEEecCCeEEEEEecC
Q 019482 237 IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR-------LHLGTSIALVEFCPTQRVVLTASKE 309 (340)
Q Consensus 237 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~d 309 (340)
+..+..+ ..+.+++|+|++.++++++.+ .+++|++........+.. .+ ...+.+++|+|||++|++|+.|
T Consensus 231 ~~~~~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~sg~~D 307 (319)
T 3frx_A 231 MYTLSAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAA-EPHAVSLAWSADGQTLFAGYTD 307 (319)
T ss_dssp EEEEECC-SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGG-CCCEEEEEECTTSSEEEEEETT
T ss_pred EEEecCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCc-CcceeEEEECCCCCEEEEeecC
Confidence 8777654 589999999999999988765 599999988766544321 22 4578999999999999999999
Q ss_pred CcEEEEEecC
Q 019482 310 WGAMITKLTV 319 (340)
Q Consensus 310 g~i~iw~~~~ 319 (340)
|.|+||++..
T Consensus 308 g~i~vWd~~t 317 (319)
T 3frx_A 308 NVIRVWQVMT 317 (319)
T ss_dssp SCEEEEEEEE
T ss_pred ceEEEEEEee
Confidence 9999999864
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=8.2e-46 Score=306.97 Aligned_cols=285 Identities=16% Similarity=0.221 Sum_probs=247.5
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
+..+|++++|+|+ ..++++|+ .++.+++|+.. .......+.+|...|.+++|+|++++|++++
T Consensus 22 h~~~v~~~~~s~~---~~~l~s~~------~dg~i~iw~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 84 (312)
T 4ery_A 22 HTKAVSSVKFSPN---GEWLASSS------ADKLIKIWGAY--------DGKFEKTISGHKLGISDVAWSSDSNLLVSAS 84 (312)
T ss_dssp CSSCEEEEEECTT---SSEEEEEE------TTSCEEEEETT--------TCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred cCCcEEEEEECCC---CCEEEEee------CCCeEEEEeCC--------CcccchhhccCCCceEEEEEcCCCCEEEEEC
Confidence 4578999999994 45677665 56669999876 3445567889999999999999999999999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 162 (340)
.|+.|++||+.+++....+.. |...|.+++|+|++++|++++.|+.|++||+++++....+..|...|.+++|
T Consensus 85 ~d~~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 157 (312)
T 4ery_A 85 DDKTLKIWDVSSGKCLKTLKG-------HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157 (312)
T ss_dssp TTSEEEEEETTTCCEEEEEEC-------CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred CCCEEEEEECCCCcEEEEEcC-------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEE
Confidence 999999999998876655532 7789999999999999999999999999999999988888888889999999
Q ss_pred cCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec
Q 019482 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (340)
Q Consensus 163 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 242 (340)
+|++++|++++.|+.|++||+++++.+..+...+...+..++|+|++++ +++++.|+.|++||+++++.+..+..
T Consensus 158 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~d~~i~iwd~~~~~~~~~~~~ 232 (312)
T 4ery_A 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY-----ILAATLDNTLKLWDYSKGKCLKTYTG 232 (312)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSE-----EEEEETTTEEEEEETTTTEEEEEECS
T ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCE-----EEEEcCCCeEEEEECCCCcEEEEEEe
Confidence 9999999999999999999999999888877666678999999999997 78889999999999999998888877
Q ss_pred cCCCe---eEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEe--cCCcEEEEEe
Q 019482 243 LRKPA---SVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS--KEWGAMITKL 317 (340)
Q Consensus 243 ~~~~i---~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iw~~ 317 (340)
+.... ......+++.+|++|+.||.|++||+.+++.+..+ ..| ...|.+++|+|++++|++++ .|+.|++|+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h-~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL-QGH-TDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp SCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE-CCC-SSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred cCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh-hcc-CCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 76543 23333468899999999999999999999888766 356 57999999999999999987 6999999986
Q ss_pred c
Q 019482 318 T 318 (340)
Q Consensus 318 ~ 318 (340)
+
T Consensus 311 d 311 (312)
T 4ery_A 311 D 311 (312)
T ss_dssp C
T ss_pred C
Confidence 4
No 14
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.5e-46 Score=311.58 Aligned_cols=289 Identities=12% Similarity=0.119 Sum_probs=230.5
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCee-eEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLV-TYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
++|++++|+| ++.++|+|+ .|+.|++|+++... ... .....+|...|.+++|+|+|++|++++.
T Consensus 17 ~~v~~l~~sp---~g~~las~~------~D~~i~iw~~~~~~------~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~ 81 (345)
T 3fm0_A 17 SRCWFLAWNP---AGTLLASCG------GDRRIRIWGTEGDS------WICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81 (345)
T ss_dssp SCEEEEEECT---TSSCEEEEE------TTSCEEEEEEETTE------EEEEEEECSSCSSCEEEEEECTTSSEEEEEET
T ss_pred CcEEEEEECC---CCCEEEEEc------CCCeEEEEEcCCCc------ceeeeeeccccCCcEEEEEECCCCCEEEEEEC
Confidence 3899999999 445677666 56669999986321 111 2234689999999999999999999999
Q ss_pred CCCEEEEEecCcee--eeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc---eeeccccCcccee
Q 019482 84 NGGCKLFEVYGGAT--DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR---IILDEPKAHKSVL 158 (340)
Q Consensus 84 d~~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~i~ 158 (340)
|+.+++|++..... ...+. .|...|.+++|+|++++|++++.|+.|++||+.++. .+..+..|...|.
T Consensus 82 D~~v~iw~~~~~~~~~~~~~~-------~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~ 154 (345)
T 3fm0_A 82 DATTCIWKKNQDDFECVTTLE-------GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154 (345)
T ss_dssp TSCEEEEEECCC-EEEEEEEC-------CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEE
T ss_pred CCcEEEEEccCCCeEEEEEcc-------CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeE
Confidence 99999999987643 22222 378899999999999999999999999999998764 3445667778999
Q ss_pred EEEecCCCCeEEEeeCCCeEEEEEccCCee--EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC--
Q 019482 159 DMDFSLDSEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-- 234 (340)
Q Consensus 159 ~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-- 234 (340)
+++|+|++++|++++.|++|++||.++++. ...+. .|...|.+++|+|++++ +++++.|+.|++||....
T Consensus 155 ~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~-~h~~~v~~l~~sp~g~~-----l~s~s~D~~v~iW~~~~~~~ 228 (345)
T 3fm0_A 155 HVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLE-GHESTVWSLAFDPSGQR-----LASCSDDRTVRIWRQYLPGN 228 (345)
T ss_dssp EEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECTTSSE-----EEEEETTSCEEEEEEECTTC
T ss_pred EEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEec-CCCCceEEEEECCCCCE-----EEEEeCCCeEEEeccccCCC
Confidence 999999999999999999999999988754 34454 45678999999999997 789999999999996432
Q ss_pred -------------cEEeeeec-cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE--------eeccccccccccee
Q 019482 235 -------------NKIGHKRL-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI--------NHWSKRLHLGTSIA 292 (340)
Q Consensus 235 -------------~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~--------~~~~~~~~~~~~i~ 292 (340)
+++..+.. |...|.+++|+|++..|++++.|+.|++|+...... ......+| ...|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h-~~~V~ 307 (345)
T 3fm0_A 229 EQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH-SQDVN 307 (345)
T ss_dssp TTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS-SSCEE
T ss_pred CccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc-cCcEe
Confidence 12223333 677899999999999999999999999999876431 11122356 57999
Q ss_pred eEEEecCC-eEEEEEecCCcEEEEEecCCCC
Q 019482 293 LVEFCPTQ-RVVLTASKEWGAMITKLTVPAD 322 (340)
Q Consensus 293 ~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~ 322 (340)
+++|+|++ .+|++|+.||.|++|++..+..
T Consensus 308 ~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 308 CVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp EEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred EeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 99999998 5999999999999999987664
No 15
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.8e-46 Score=322.11 Aligned_cols=267 Identities=16% Similarity=0.209 Sum_probs=240.5
Q ss_pred eeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC
Q 019482 55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (340)
Q Consensus 55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 134 (340)
....+.+|.++|++++|+|++.+|++|+.|+.|++||+.+++....+. .|...|.+++|+|++++|++|+.|+
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~-------~h~~~V~~v~~~~~~~~l~sgs~D~ 172 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-------GHTDSVQDISFDHSGKLLASCSADM 172 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC-------CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-------ccCCcEEEEEEcCCCCEEEEEeCCC
Confidence 346788999999999999999999999999999999999887665553 2778999999999999999999999
Q ss_pred cEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE
Q 019482 135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (340)
Q Consensus 135 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (340)
+|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||+++++++..+.. +...+.++.|+|++..
T Consensus 173 ~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~g~~--- 248 (410)
T 1vyh_C 173 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG-HREWVRMVRPNQDGTL--- 248 (410)
T ss_dssp CCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECTTSSE---
T ss_pred eEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeC-CCccEEEEEECCCCCE---
Confidence 999999999999888888989999999999999999999999999999999999988875 4567999999999997
Q ss_pred EEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCC--------------------CCEEEEeeCCCcEEEEecc
Q 019482 215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD--------------------GKYLAMGSKDGDICVVDVK 274 (340)
Q Consensus 215 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~--------------------~~~l~~~~~dg~i~i~d~~ 274 (340)
+++++.|+.|++||+++++....+..|...|.+++|+|+ +.+|++|+.|+.|++||++
T Consensus 249 --l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~ 326 (410)
T 1vyh_C 249 --IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326 (410)
T ss_dssp --EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred --EEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence 789999999999999999999899999999999999996 6789999999999999999
Q ss_pred CceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482 275 KMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV 339 (340)
Q Consensus 275 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v 339 (340)
+++++..+ .+| ...|++++|+|++++|++++.||.|++|++.... .......|...|.++
T Consensus 327 ~~~~~~~~-~~h-~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~---~~~~~~~h~~~v~~l 386 (410)
T 1vyh_C 327 TGMCLMTL-VGH-DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR---CMKTLNAHEHFVTSL 386 (410)
T ss_dssp TTEEEEEE-ECC-SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC---CCEEEECCSSCEEEE
T ss_pred CCceEEEE-ECC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---eEEEEcCCCCcEEEE
Confidence 99988766 356 5789999999999999999999999999996543 455566788777665
No 16
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.6e-45 Score=314.72 Aligned_cols=284 Identities=16% Similarity=0.197 Sum_probs=236.6
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEec------------------CCC
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE------------------SEG 64 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~------------------h~~ 64 (340)
+..+|+|++|+| ++.++|+|+ ++.+++|++... .....+.+ +..
T Consensus 63 h~~~V~~v~fsp---dg~~la~g~-------~~~v~i~~~~~g--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 124 (393)
T 1erj_A 63 HTSVVCCVKFSN---DGEYLATGC-------NKTTQVYRVSDG--------SLVARLSDDSAANKDPENLNTSSSPSSDL 124 (393)
T ss_dssp CSSCCCEEEECT---TSSEEEEEC-------BSCEEEEETTTC--------CEEEEECC-----------------CCCC
T ss_pred CCCEEEEEEECC---CCCEEEEEc-------CCcEEEEEecCC--------CEEEEecCccccccccccccccccCCCce
Confidence 567899999999 456777543 456999987622 11222222 233
Q ss_pred CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC
Q 019482 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL 144 (340)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 144 (340)
.|.+++|+|+|++|++++.|+.|++||+.+++....+. .|...|.+++|+|++++|++++.|++|++||++++
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~ 197 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ-------GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG 197 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc-------cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC
Confidence 49999999999999999999999999999887655543 37789999999999999999999999999999998
Q ss_pred ceeeccccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeEEEee------cCCCCceeeEEEccCCCcceEEEE
Q 019482 145 RIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLT------RNSDEKIELCRFSKDGTKPFLFCT 217 (340)
Q Consensus 145 ~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~ 217 (340)
+....+ .+...+.+++|+| ++++|++++.|+.|++||+++++.+..+. ..+...|.+++|+|+++. +
T Consensus 198 ~~~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-----l 271 (393)
T 1erj_A 198 QCSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS-----V 271 (393)
T ss_dssp EEEEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE-----E
T ss_pred eeEEEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCE-----E
Confidence 876655 3566899999999 89999999999999999999988877663 245678999999999987 7
Q ss_pred EecCCcceEEEEECCCC------------cEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc
Q 019482 218 VQRGDKALLAVYDISTW------------NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285 (340)
Q Consensus 218 ~~~~~d~~i~i~d~~~~------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 285 (340)
++++.|+.|++||+++. .....+..|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+ .+
T Consensus 272 ~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l-~~ 350 (393)
T 1erj_A 272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML-QG 350 (393)
T ss_dssp EEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE-EC
T ss_pred EEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE-CC
Confidence 89999999999999763 334567788889999999999999999999999999999999887766 46
Q ss_pred ccccceeeEEEec------CCeEEEEEecCCcEEEEEecC
Q 019482 286 HLGTSIALVEFCP------TQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 286 ~~~~~i~~~~~~~------~~~~l~~~~~dg~i~iw~~~~ 319 (340)
| ...|.+++|++ ++++|++|+.||.|+||++..
T Consensus 351 h-~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 351 H-RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp C-SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred C-CCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 6 57899999986 689999999999999999864
No 17
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-45 Score=305.82 Aligned_cols=286 Identities=14% Similarity=0.109 Sum_probs=219.9
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEE-ec-CCCCeeEEEEcCCCCeEEE
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF-DE-SEGDPMTIAVNPSGDDFVC 80 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~~~~~~~~~~l~~ 80 (340)
+..+|++++|+| + ++++|+ .|+.|++|++.... ......+ .+ |...|.+++|+|++++|++
T Consensus 13 h~~~v~~~~~s~---~--~las~~------~D~~i~lw~~~~~~------~~~~~~~~~~~h~~~v~~v~~sp~~~~las 75 (330)
T 2hes_X 13 YKEKIWSFDFSQ---G--ILATGS------TDRKIKLVSVKYDD------FTLIDVLDETAHKKAIRSVAWRPHTSLLAA 75 (330)
T ss_dssp CSSCEEEEEEET---T--EEEEEE------SSSCEEEEECSSSC------CEEEEEECTTCCCSCEEEEEECTTSSEEEE
T ss_pred CCCceeeeccCC---C--EEEEEc------CCCEEEEEEecCCC------eEEEEEEecCCccCCEEEEEECCCCCEEEE
Confidence 467899999998 3 677665 56679999986321 1222334 34 9999999999999999999
Q ss_pred EecCCCEEEEEecCce-------eeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC----ceeec
Q 019482 81 STTNGGCKLFEVYGGA-------TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL----RIILD 149 (340)
Q Consensus 81 ~~~d~~i~iw~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~----~~~~~ 149 (340)
++.|+.|++||+.... ....+ ..|...|.+++|+|++++|++|+.|++|++||++.. +.+..
T Consensus 76 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~-------~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~ 148 (330)
T 2hes_X 76 GSFDSTVSIWAKEESADRTFEMDLLAII-------EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISV 148 (330)
T ss_dssp EETTSCEEEEEC-------CCCEEEEEE-------C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEE
T ss_pred EeCCCcEEEEEcccCcCccccceeEEEE-------cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEE
Confidence 9999999999986422 11111 137889999999999999999999999999999532 34556
Q ss_pred cccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCC--eeEEEeecCCCCceeeEEEccC--CCcceEEEEEecCCcce
Q 019482 150 EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG--VAWTFLTRNSDEKIELCRFSKD--GTKPFLFCTVQRGDKAL 225 (340)
Q Consensus 150 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~d~~ 225 (340)
+..|...|.+++|+|++++|++++.|++|++||.+++ +++..+.. |...|.+++|+|+ +.. +++++.|+.
T Consensus 149 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~-----l~s~s~D~~ 222 (330)
T 2hes_X 149 LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG-HEGTVWSSDFDKTEGVFR-----LCSGSDDST 222 (330)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCSSSSCE-----EEEEETTSC
T ss_pred eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccC-CCCcEEEEEecCCCCeeE-----EEEEeCCCe
Confidence 6778889999999999999999999999999999876 56666654 5578999999998 444 688999999
Q ss_pred EEEEECCCC--------cEEeeeec-cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce--EeecccccccccceeeE
Q 019482 226 LAVYDISTW--------NKIGHKRL-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME--INHWSKRLHLGTSIALV 294 (340)
Q Consensus 226 i~i~d~~~~--------~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~i~~~ 294 (340)
|++||++.+ .....+.. |...|.+++|++++ +|++++.||.|++||..+++ ........|....|.++
T Consensus 223 v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v 301 (330)
T 2hes_X 223 VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVV 301 (330)
T ss_dssp EEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEE
T ss_pred EEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEE
Confidence 999998764 23333443 78899999999765 89999999999999998874 23233345532389999
Q ss_pred EEec--CCeEEEEEecCCcEEEEEecC
Q 019482 295 EFCP--TQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 295 ~~~~--~~~~l~~~~~dg~i~iw~~~~ 319 (340)
+|+| ++++|++|+.||.|+||+++.
T Consensus 302 ~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 302 KWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEecCCCceEEEEecCCCcEEEEEecc
Confidence 9999 789999999999999999853
No 18
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.1e-46 Score=335.51 Aligned_cols=286 Identities=15% Similarity=0.156 Sum_probs=238.5
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
.+.+.+++|+| +++.++++. ++.+.+|++. .+.....+.+|...|++++|+|+|++||+|+.
T Consensus 18 ~g~~~~~~~sp---dg~~l~~~~-------~~~v~l~~~~--------~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~ 79 (611)
T 1nr0_A 18 RGTAVVLGNTP---AGDKIQYCN-------GTSVYTVPVG--------SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 79 (611)
T ss_dssp TTCCCCCEECT---TSSEEEEEE-------TTEEEEEETT--------CSSCCEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred cCceeEEeeCC---CCCEEEeCC-------CCEEEEecCC--------CcccCeEecCCCCceEEEEECCCCcEEEEEeC
Confidence 46788999999 455777554 3469999986 33344678899999999999999999999999
Q ss_pred CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC----CcEEEEeCCCCceeeccccCccceeE
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----GHLRIMHWPSLRIILDEPKAHKSVLD 159 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~~i~~ 159 (340)
|+.|+|||+.+++....... ..|.++|.+++|+|++++|++++.+ +.|++|| +++....+.+|...|.+
T Consensus 80 d~~v~lWd~~~~~~~~~~~~-----~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~ 152 (611)
T 1nr0_A 80 HGNVRIWDTTQTTHILKTTI-----PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNS 152 (611)
T ss_dssp TSEEEEEESSSTTCCEEEEE-----ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEE
T ss_pred CCCEEEeECCCCcceeeEee-----cccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceE
Confidence 99999999975433211111 1277899999999999999988765 4788887 45566677888889999
Q ss_pred EEecCCCC-eEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEe
Q 019482 160 MDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG 238 (340)
Q Consensus 160 ~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~ 238 (340)
++|+|++. .|++++.|++|++||.++++....+.. |...|.+++|+|+++. +++++.|+.|++||+.+++.+.
T Consensus 153 v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~-H~~~V~~v~fspdg~~-----las~s~D~~i~lwd~~~g~~~~ 226 (611)
T 1nr0_A 153 VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE-HTKFVHSVRYNPDGSL-----FASTGGDGTIVLYNGVDGTKTG 226 (611)
T ss_dssp EEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC-CSSCEEEEEECTTSSE-----EEEEETTSCEEEEETTTCCEEE
T ss_pred EEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecc-ccCceEEEEECCCCCE-----EEEEECCCcEEEEECCCCcEee
Confidence 99999987 599999999999999999888888764 5568999999999997 7899999999999999998877
Q ss_pred eee-------ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc----------------------------
Q 019482 239 HKR-------LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK---------------------------- 283 (340)
Q Consensus 239 ~~~-------~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------------------------- 283 (340)
.+. .|...|.+++|+|+|++|++++.|+.|++||+.+++.+..+.
T Consensus 227 ~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i 306 (611)
T 1nr0_A 227 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 306 (611)
T ss_dssp ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCE
T ss_pred eeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcE
Confidence 774 688999999999999999999999999999999876543321
Q ss_pred --------------ccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 284 --------------RLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 284 --------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
.+| ...|++++|+|||++|++++.|+.|++|++....
T Consensus 307 ~~~~~~~~~~~~~~~gh-~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 307 NFVNPELGSIDQVRYGH-NKAITALSSSADGKTLFSADAEGHINSWDISTGI 357 (611)
T ss_dssp EEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred EEEeCCCCCcceEEcCC-CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Confidence 245 5689999999999999999999999999987543
No 19
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7e-46 Score=307.98 Aligned_cols=269 Identities=18% Similarity=0.186 Sum_probs=233.3
Q ss_pred eeEEEecCCCCeeEEEEcCC----CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEc
Q 019482 55 VTYVFDESEGDPMTIAVNPS----GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG 130 (340)
Q Consensus 55 ~~~~~~~h~~~v~~~~~~~~----~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 130 (340)
....+++|.+.|.+++|+|+ +.+|++|+.|++|++|++...+....... ..|...|.+++|++++.+++++
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l-----~gh~~~v~~~~~~~~~~~l~s~ 98 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL-----EGHQLGVVSVDISHTLPIAASS 98 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEE-----CCCSSCEEEEEECSSSSEEEEE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeee-----ccCCCCEEEEEECCCCCEEEEE
Confidence 34556789999999999985 56899999999999999987654332211 1378899999999999999999
Q ss_pred cCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCC
Q 019482 131 GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210 (340)
Q Consensus 131 ~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (340)
+.|++|++||+++++.+..+..+...+.+++|+|++++|++++.|+.|++||+++++....+.. +...+.+++|+|+++
T Consensus 99 s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~-~~~~v~~~~~spdg~ 177 (321)
T 3ow8_A 99 SLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDT-RGKFILSIAYSPDGK 177 (321)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEEC-SSSCEEEEEECTTSS
T ss_pred eCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecC-CCceEEEEEECCCCC
Confidence 9999999999999998888888888899999999999999999999999999999988887764 445799999999999
Q ss_pred cceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccc
Q 019482 211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS 290 (340)
Q Consensus 211 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 290 (340)
. +++++.|+.|++||+++++.+..+..|..+|.+++|+|++++|++++.|+.|++||+++++....+ ..| ...
T Consensus 178 ~-----lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h-~~~ 250 (321)
T 3ow8_A 178 Y-----LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL-SGH-ASW 250 (321)
T ss_dssp E-----EEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE-CCC-SSC
T ss_pred E-----EEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE-cCC-CCc
Confidence 7 788999999999999999999999999999999999999999999999999999999998887665 456 578
Q ss_pred eeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482 291 IALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV 339 (340)
Q Consensus 291 i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v 339 (340)
|.+++|+|++++|++++.|+.|++|++.... .......|...|.+|
T Consensus 251 v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~---~~~~~~~h~~~v~~v 296 (321)
T 3ow8_A 251 VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT---CVHTFFDHQDQVWGV 296 (321)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCE---EEEEEcCCCCcEEEE
Confidence 9999999999999999999999999996543 345556677777655
No 20
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.3e-45 Score=306.72 Aligned_cols=270 Identities=13% Similarity=0.120 Sum_probs=233.5
Q ss_pred CeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC
Q 019482 53 PLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV 132 (340)
Q Consensus 53 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 132 (340)
......+.+|.+.|.+++|+|++++|++++.|+.|++||+.+++....+.. |...|.+++|+|++++|++++.
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~s~~~ 117 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL-------RSSWVMTCAYAPSGNYVACGGL 117 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-------SSSCEEEEEECTTSSEEEEEET
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeec-------CCccEEEEEECCCCCEEEEEeC
Confidence 345577999999999999999999999999999999999988776555432 6688999999999999999999
Q ss_pred CCcEEEEeCCCCc----eeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccC
Q 019482 133 DGHLRIMHWPSLR----IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD 208 (340)
Q Consensus 133 dg~i~~~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 208 (340)
|+.|++|++.+.+ ....+.+|...|.++.|++++. +++++.|++|++||+++++.+..+.. +...|.+++|+|+
T Consensus 118 d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~ 195 (340)
T 1got_B 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPD 195 (340)
T ss_dssp TCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTT
T ss_pred CCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcC-CCCceEEEEECCC
Confidence 9999999998753 3445667888999999998875 88999999999999999999888874 4568999999999
Q ss_pred CCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccc
Q 019482 209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLG 288 (340)
Q Consensus 209 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 288 (340)
+.. +++++.|+.|++||+++++.+..+..|...|.+++|+|++++|++++.||.|++||+++++.+..+......
T Consensus 196 ~~~-----l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~ 270 (340)
T 1got_B 196 TRL-----FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII 270 (340)
T ss_dssp SSE-----EEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC
T ss_pred CCE-----EEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcc
Confidence 986 789999999999999999999999999999999999999999999999999999999998876655322223
Q ss_pred cceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482 289 TSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV 339 (340)
Q Consensus 289 ~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v 339 (340)
..|.+++|+|++++|++|+.||.|++|++.... .......|...|.+|
T Consensus 271 ~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~---~~~~~~~h~~~v~~~ 318 (340)
T 1got_B 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD---RAGVLAGHDNRVSCL 318 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEE
T ss_pred cceEEEEECCCCCEEEEECCCCeEEEEEcccCc---EeeEeecCCCcEEEE
Confidence 479999999999999999999999999986543 345566788777665
No 21
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.5e-44 Score=301.81 Aligned_cols=294 Identities=10% Similarity=0.106 Sum_probs=231.5
Q ss_pred CCceeEEeeeeec---CCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEE
Q 019482 3 GGGTVTCGSWIKR---PENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV 79 (340)
Q Consensus 3 ~~~~v~~~~w~~~---~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 79 (340)
+..+|++++|.+. +.+..++++|+ .|+.|++|++....... ........+.+|...|.+++|+|++.+++
T Consensus 20 H~~~V~~~~~~~s~~~~~d~~~l~sgs------~D~~v~iWd~~~~~~~~-~~~~~~~~l~~h~~~V~~~~~~~~~~~l~ 92 (343)
T 2xzm_R 20 HSDWVTSIVAGFSQKENEDSPVLISGS------RDKTVMIWKLYEEEQNG-YFGIPHKALTGHNHFVSDLALSQENCFAI 92 (343)
T ss_dssp CSSCEEEEEECCCSSTTCCCCEEEEEE------TTSCEEEEEECSSCCSS-BSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred chhhhhheeeEEEeecCCCCCEEEEEc------CCCEEEEEECCcCCccc-ccccccchhccCCCceEEEEECCCCCEEE
Confidence 4678999999321 11456777766 56669999987433211 12344567899999999999999999999
Q ss_pred EEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceee--ccccCccce
Q 019482 80 CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL--DEPKAHKSV 157 (340)
Q Consensus 80 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~~~i 157 (340)
+++.|+.|++||+.+++....+. .|...|.+++|+|++++|++++.|+.|++||+....... ....|...|
T Consensus 93 s~s~D~~v~lwd~~~~~~~~~~~-------~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v 165 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTTYKRFV-------GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWV 165 (343)
T ss_dssp EEETTSEEEEEETTSSCEEEEEE-------CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCE
T ss_pred EEcCCCcEEEEECCCCcEEEEEc-------CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCcee
Confidence 99999999999999887665554 378899999999999999999999999999997433221 122566789
Q ss_pred eEEEecCCC----------CeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEE
Q 019482 158 LDMDFSLDS----------EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227 (340)
Q Consensus 158 ~~~~~~~~~----------~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~ 227 (340)
.+++|+|++ .+|++++.|+.|++||. ..+....+.. +...|.+++|+|++++ +++++.|+.|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~-h~~~v~~~~~s~~g~~-----l~sgs~dg~v~ 238 (343)
T 2xzm_R 166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKA-HESNVNHLSISPNGKY-----IATGGKDKKLL 238 (343)
T ss_dssp EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEEC-CSSCEEEEEECTTSSE-----EEEEETTCEEE
T ss_pred eeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcC-ccccceEEEECCCCCE-----EEEEcCCCeEE
Confidence 999999986 78999999999999994 5566666654 5568999999999997 78999999999
Q ss_pred EEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEee--ccc----------ccccccceeeEE
Q 019482 228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH--WSK----------RLHLGTSIALVE 295 (340)
Q Consensus 228 i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~----------~~~~~~~i~~~~ 295 (340)
+||++..........+...|.+++|+|++.+++++ .|+.|++||+.+++... .+. ..| ...|.+++
T Consensus 239 iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~ 316 (343)
T 2xzm_R 239 IWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGK-NPQCTSLA 316 (343)
T ss_dssp EEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCS-CCCEEEEE
T ss_pred EEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCC-CCceEEEE
Confidence 99995443322333355679999999999888765 57789999998765433 211 134 46799999
Q ss_pred EecCCeEEEEEecCCcEEEEEecC
Q 019482 296 FCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 296 ~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
|+|+|++|++|+.||.|++|+++.
T Consensus 317 ~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 317 WNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp ECSSSCCEEEEETTSEEEEEEEEE
T ss_pred ECCCCCeEEEecCCceEEEEEEEc
Confidence 999999999999999999999864
No 22
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.1e-44 Score=300.91 Aligned_cols=270 Identities=12% Similarity=0.154 Sum_probs=230.8
Q ss_pred eeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC
Q 019482 54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD 133 (340)
Q Consensus 54 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 133 (340)
....++.+|.+.|++++|+|++++|++++.|+.|++||..+.+....+.. |...|.+++|+|++.+|++++.|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-------~~~~v~~~~~sp~g~~lasg~~d 127 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM-------PCTWVMACAYAPSGCAIACGGLD 127 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-------SSSCCCEEEECTTSSEEEEESTT
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEec-------CCCCEEEEEECCCCCEEEEeeCC
Confidence 34577999999999999999999999999999999999988766554432 55789999999999999999999
Q ss_pred CcEEEEeCCCC------ceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEcc
Q 019482 134 GHLRIMHWPSL------RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK 207 (340)
Q Consensus 134 g~i~~~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (340)
+.+++|++... .....+..|...|.++.|+|+++.|++++.|++|++||+++++.+..+..+ ...+.+++|+|
T Consensus 128 ~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h-~~~v~~~~~~~ 206 (354)
T 2pbi_B 128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGH-GADVLCLDLAP 206 (354)
T ss_dssp SEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECC
T ss_pred CCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCC-CCCeEEEEEEe
Confidence 99999998643 223345567789999999999999999999999999999999999888754 46799999988
Q ss_pred C--CCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc
Q 019482 208 D--GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285 (340)
Q Consensus 208 ~--~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 285 (340)
+ +.. +++++.|+.|++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+...
T Consensus 207 ~~~g~~-----l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~ 281 (354)
T 2pbi_B 207 SETGNT-----FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE 281 (354)
T ss_dssp CSSCCE-----EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT
T ss_pred CCCCCE-----EEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 5 455 788999999999999999999999999999999999999999999999999999999988776554322
Q ss_pred ccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482 286 HLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV 339 (340)
Q Consensus 286 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v 339 (340)
.....+.+++|+|++++|++++.|+.|++|++.... .......|.+.|.++
T Consensus 282 ~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~---~~~~l~~h~~~v~~l 332 (354)
T 2pbi_B 282 SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS---RVSILFGHENRVSTL 332 (354)
T ss_dssp TCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS---EEEEECCCSSCEEEE
T ss_pred CcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc---eEEEEECCCCcEEEE
Confidence 223478999999999999999999999999986443 344556788777665
No 23
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2e-43 Score=296.44 Aligned_cols=275 Identities=13% Similarity=0.108 Sum_probs=223.8
Q ss_pred eeeEEEecCCC-CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC
Q 019482 54 LVTYVFDESEG-DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV 132 (340)
Q Consensus 54 ~~~~~~~~h~~-~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 132 (340)
.....+.+|.. .|.+++|+|+|++||+++.|+.|+|||+.++........ ...|...|.+++|+|++++|++++.
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~----~~~h~~~v~~~~~sp~g~~l~s~s~ 81 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVL----SEGHQRTVRKVAWSPCGNYLASASF 81 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEE----CSSCSSCEEEEEECTTSSEEEEEET
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeee----ccccCCcEEEEEECCCCCEEEEEEC
Confidence 34567889988 899999999999999999999999999988754322211 1247889999999999999999999
Q ss_pred CCcEEEEeCCCCc--eeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee---EEEeecCCCCceeeEEEcc
Q 019482 133 DGHLRIMHWPSLR--IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA---WTFLTRNSDEKIELCRFSK 207 (340)
Q Consensus 133 dg~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~ 207 (340)
|+.+++|++.++. .+..+.+|...|.+++|+|++++|++++.|++|++||++++.. +..+. .+...|.+++|+|
T Consensus 82 D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~~p 160 (345)
T 3fm0_A 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN-SHTQDVKHVVWHP 160 (345)
T ss_dssp TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEEC-CCCSCEEEEEECS
T ss_pred CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEec-CcCCCeEEEEECC
Confidence 9999999988764 4566778888999999999999999999999999999987643 33443 4556899999999
Q ss_pred CCCcceEEEEEecCCcceEEEEECCCCc--EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCc---------
Q 019482 208 DGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM--------- 276 (340)
Q Consensus 208 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--------- 276 (340)
++.. +++++.|+.|++||.++++ ....+..|...|.+++|+|+|++|++++.|+.|++||....
T Consensus 161 ~~~~-----l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~ 235 (345)
T 3fm0_A 161 SQEL-----LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACS 235 (345)
T ss_dssp SSSC-----EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC
T ss_pred CCCE-----EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceee
Confidence 9997 7899999999999998875 34667889999999999999999999999999999997432
Q ss_pred ------eEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCC------ccccccccccccC
Q 019482 277 ------EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGL------SLPLLHSHSQNSV 339 (340)
Q Consensus 277 ------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~------~~~~~h~~~v~~v 339 (340)
+++..+...| ...|.+++|+|++..|++++.|+.|++|+.......... .....|...|++|
T Consensus 236 ~~~~~~~~~~~~~~~h-~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 309 (345)
T 3fm0_A 236 GSDPSWKCICTLSGFH-SRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV 309 (345)
T ss_dssp ---CEEEEEEEECSSC-SSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEE
T ss_pred ccCCccceeEEecCCC-CCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEe
Confidence 2222232224 578999999999999999999999999999755422111 1234677777765
No 24
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=9.8e-43 Score=291.24 Aligned_cols=288 Identities=14% Similarity=0.129 Sum_probs=242.7
Q ss_pred CCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEE
Q 019482 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81 (340)
Q Consensus 2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 81 (340)
.+..+|++++|+| +..++++++ ++.+++|+++..... .........+|...|.+++|+|++++|+++
T Consensus 49 ~h~~~v~~~~~~~---~~~~l~~~~-------dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 115 (337)
T 1gxr_A 49 NHGEVVCAVTISN---PTRHVYTGG-------KGCVKVWDISHPGNK---SPVSQLDCLNRDNYIRSCKLLPDGCTLIVG 115 (337)
T ss_dssp CCSSCCCEEEECS---SSSEEEEEC-------BSEEEEEETTSTTCC---SCSEEEECSCTTSBEEEEEECTTSSEEEEE
T ss_pred cCCCceEEEEEec---CCcEEEEcC-------CCeEEEEECCCCCce---eeeecccccCCCCcEEEEEEcCCCCEEEEE
Confidence 3567899999999 445666443 566999998754321 122223333799999999999999999999
Q ss_pred ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEE
Q 019482 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (340)
Q Consensus 82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~ 161 (340)
+.|+.|++||+.+.+........ .|...|.+++|+|++++|++++.||.|++||+++++....+..|...+.+++
T Consensus 116 ~~d~~i~~~d~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 190 (337)
T 1gxr_A 116 GEASTLSIWDLAAPTPRIKAELT-----SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 190 (337)
T ss_dssp ESSSEEEEEECCCC--EEEEEEE-----CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred cCCCcEEEEECCCCCcceeeecc-----cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEE
Confidence 99999999999887632222111 2668899999999999999999999999999999998888888888999999
Q ss_pred ecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee
Q 019482 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (340)
Q Consensus 162 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 241 (340)
|+|++++|++++.|+.|++||+++++.+..+. +...+.+++|+|+++. +++++.++.|++||+++++.. .+.
T Consensus 191 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~-----l~~~~~~~~i~~~~~~~~~~~-~~~ 262 (337)
T 1gxr_A 191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEW-----LAVGMESSNVEVLHVNKPDKY-QLH 262 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSE-----EEEEETTSCEEEEETTSSCEE-EEC
T ss_pred ECCCCCEEEEEecCCcEEEEECCCCceEeeec--CCCceEEEEECCCCCE-----EEEEcCCCcEEEEECCCCCeE-EEc
Confidence 99999999999999999999999999888775 4567999999999987 778888999999999988764 567
Q ss_pred ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 242 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
.+...+.+++|+|++++|++++.||.|++||+.+++.+... .| ...+.+++|+|++++|++++.||.|++|++.
T Consensus 263 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~--~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--KE-SSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--EC-SSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred CCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe--cC-CCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 78899999999999999999999999999999998877443 34 5789999999999999999999999999974
No 25
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.5e-43 Score=297.38 Aligned_cols=290 Identities=15% Similarity=0.174 Sum_probs=240.5
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
+..+|++++|+| +..++++|+ .++.|++|+++.. .......+.+|...|.+++|+|++++|++++
T Consensus 7 ~~~~i~~~~~s~---~~~~l~~~~------~d~~v~i~~~~~~------~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 71 (372)
T 1k8k_C 7 LVEPISCHAWNK---DRTQIAICP------NNHEVHIYEKSGN------KWVQVHELKEHNGQVTGVDWAPDSNRIVTCG 71 (372)
T ss_dssp CSSCCCEEEECT---TSSEEEEEC------SSSEEEEEEEETT------EEEEEEEEECCSSCEEEEEEETTTTEEEEEE
T ss_pred cCCCeEEEEECC---CCCEEEEEe------CCCEEEEEeCCCC------cEEeeeeecCCCCcccEEEEeCCCCEEEEEc
Confidence 467899999999 445677665 4667999998722 1125567889999999999999999999999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCce----eeccccCcccee
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI----ILDEPKAHKSVL 158 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~----~~~~~~~~~~i~ 158 (340)
.|+.|++||+.+++....... ..|...|.+++|+|++++|++++.|+.|++||++.++. ......|...|.
T Consensus 72 ~dg~i~vwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~ 146 (372)
T 1k8k_C 72 TDRNAYVWTLKGRTWKPTLVI-----LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL 146 (372)
T ss_dssp TTSCEEEEEEETTEEEEEEEC-----CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred CCCeEEEEECCCCeeeeeEEe-----ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCee
Confidence 999999999988764433321 23778999999999999999999999999999987762 222345667899
Q ss_pred EEEecCCCCeEEEeeCCCeEEEEEcc------------------CCeeEEEeecCCCCceeeEEEccCCCcceEEEEEec
Q 019482 159 DMDFSLDSEFLATTSTDGSARIWKTE------------------DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR 220 (340)
Q Consensus 159 ~~~~~~~~~~l~~~~~d~~v~iwd~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 220 (340)
+++|+|++++|++++.|+.|++||++ .++.+..+. .+...+.+++|+|++.. ++++
T Consensus 147 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~-----l~~~ 220 (372)
T 1k8k_C 147 SLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSR-----VAWV 220 (372)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSE-----EEEE
T ss_pred EEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCCCCE-----EEEE
Confidence 99999999999999999999999953 567777776 45568999999999986 7888
Q ss_pred CCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC--ceE--e-----------------
Q 019482 221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK--MEI--N----------------- 279 (340)
Q Consensus 221 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~--~~~--~----------------- 279 (340)
+.|+.|++||+++++.+..+..+..++.+++|+|++++++++ .|+.|++|++.+ ++. .
T Consensus 221 ~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (372)
T 1k8k_C 221 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTAR 299 (372)
T ss_dssp ETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHH
T ss_pred eCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchh
Confidence 999999999999999999999999999999999999988888 899999999988 421 0
Q ss_pred -------------------ecccccccccceeeEEEe-cCC---eEEEEEecCCcEEEEEecCC
Q 019482 280 -------------------HWSKRLHLGTSIALVEFC-PTQ---RVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 280 -------------------~~~~~~~~~~~i~~~~~~-~~~---~~l~~~~~dg~i~iw~~~~~ 320 (340)
..+..+| ..+|++++|. ++| ++|++++.||.|++|++...
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 300 ERFQNLDKKASSEGSAAAGAGLDSLH-KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp HHHHHCCCCC---------CCCSSSS-SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred hhhhhcccccccccCccccccccccc-cCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 2222356 6799999977 566 99999999999999999754
No 26
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.5e-43 Score=290.50 Aligned_cols=271 Identities=17% Similarity=0.209 Sum_probs=230.3
Q ss_pred CCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc
Q 019482 52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131 (340)
Q Consensus 52 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 131 (340)
.......+.+|.+.|++++|+|++++|++++.|+.|++|++.+++....+. .|...|.+++|+|++++|++++
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~s~~ 84 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-------GHKLGISDVAWSSDSNLLVSAS 84 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-------CCSSCEEEEEECTTSSEEEEEE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc-------cCCCceEEEEEcCCCCEEEEEC
Confidence 455677889999999999999999999999999999999998877655443 3778999999999999999999
Q ss_pred CCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCc
Q 019482 132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (340)
Q Consensus 132 ~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (340)
.|+.|++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+.. +...+.+++|+|+++.
T Consensus 85 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 163 (312)
T 4ery_A 85 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSL 163 (312)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSE
T ss_pred CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC-CCCcEEEEEEcCCCCE
Confidence 999999999999998888888888999999999999999999999999999999998888864 4568999999999987
Q ss_pred ceEEEEEecCCcceEEEEECCCCcEEeeee-ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccc-c
Q 019482 212 PFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLG-T 289 (340)
Q Consensus 212 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~ 289 (340)
+++++.|+.|++||+++++.+..+. .+...+..++|+|++++|++++.|+.|++||+++++.+..+. .|.. .
T Consensus 164 -----l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~ 237 (312)
T 4ery_A 164 -----IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHKNEK 237 (312)
T ss_dssp -----EEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC-SSCCSS
T ss_pred -----EEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE-ecCCce
Confidence 7888999999999999998776654 445679999999999999999999999999999998877653 3321 1
Q ss_pred ceeeEEEe-cCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482 290 SIALVEFC-PTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV 339 (340)
Q Consensus 290 ~i~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v 339 (340)
......++ +++.+|++|+.||.|++|++.... .......|...|.++
T Consensus 238 ~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~ 285 (312)
T 4ery_A 238 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVIST 285 (312)
T ss_dssp SCCCEEEECSSSCEEEECCTTSCEEEEETTTCC---EEEEECCCSSCEEEE
T ss_pred EEEEEEEEeCCCcEEEEECCCCEEEEEECCCch---hhhhhhccCCcEEEE
Confidence 22333444 678999999999999999987544 344556676666544
No 27
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.1e-43 Score=289.23 Aligned_cols=255 Identities=14% Similarity=0.122 Sum_probs=209.5
Q ss_pred EEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCc--eeeeeeccccCCCCCCCCCeEEEEEec--CCCeEEEccC
Q 019482 57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGG--ATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGV 132 (340)
Q Consensus 57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~ 132 (340)
..+.+|.+.|++++|+|+|++||+|+.|+.|+|||+... +....+. .|.++|.+++|+| ++++|++|+.
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~-------gH~~~V~~v~~s~~~~g~~l~s~s~ 75 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLT-------GHEGPVWRVDWAHPKFGTILASCSY 75 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEEC-------CCSSCEEEEEECCGGGCSEEEEEET
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEc-------cccCCeEEEEecCCCcCCEEEEEcC
Confidence 357789999999999999999999999999999999753 2222222 3889999999986 4889999999
Q ss_pred CCcEEEEeCCCCc--eeeccccCccceeEEEecCC--CCeEEEeeCCCeEEEEEccCCee--EEEeecCCCCceeeEEEc
Q 019482 133 DGHLRIMHWPSLR--IILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFS 206 (340)
Q Consensus 133 dg~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~ 206 (340)
|++|++||+++++ .+..+..|...|.+++|+|+ +++|++++.|++|++||++++.. ...+. .+...+.+++|+
T Consensus 76 D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~-~h~~~v~~~~~~ 154 (297)
T 2pm7_B 76 DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWA 154 (297)
T ss_dssp TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE-CCSSCEEEEEEC
T ss_pred CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee-cccCccceEeec
Confidence 9999999998764 44455667789999999997 88999999999999999987632 23333 456689999999
Q ss_pred cCC-------------CcceEEEEEecCCcceEEEEECCCCc----EEeeeeccCCCeeEEEECCCC---CEEEEeeCCC
Q 019482 207 KDG-------------TKPFLFCTVQRGDKALLAVYDISTWN----KIGHKRLLRKPASVLSISLDG---KYLAMGSKDG 266 (340)
Q Consensus 207 ~~~-------------~~~~~~~~~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~dg 266 (340)
|++ +. +++++.|+.|++||+++++ ....+..|...|.+++|+|++ ++|++++.|+
T Consensus 155 p~~~~~~~~~~~~~~~~~-----l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~ 229 (297)
T 2pm7_B 155 PATIEEDGEHNGTKESRK-----FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR 229 (297)
T ss_dssp CCC------------CCE-----EEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred CCcccccccCCCCCCcce-----EEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC
Confidence 973 33 7889999999999998766 556778899999999999984 8999999999
Q ss_pred cEEEEeccCce---Eeeccc-ccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCC
Q 019482 267 DICVVDVKKME---INHWSK-RLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKG 325 (340)
Q Consensus 267 ~i~i~d~~~~~---~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 325 (340)
.|++||+++.. ....+. ..| ...|.+++|+|++++|++++.||.|+||+....+.|..
T Consensus 230 ~v~iWd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~w~~ 291 (297)
T 2pm7_B 230 TCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEP 291 (297)
T ss_dssp CEEEEEESSTTSCCEEEESSSSCC-SSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred cEEEEEeCCCCCccceeeeecccC-CCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCcEEe
Confidence 99999997742 111111 234 56899999999999999999999999999986665443
No 28
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.3e-42 Score=311.28 Aligned_cols=276 Identities=16% Similarity=0.221 Sum_probs=236.1
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
+..+|.+++|+|+ ..++++++ .++.+++|+.+. .....+.+|...|.+++|+|++++|++++
T Consensus 302 h~~~v~~~~~~~~---~~~l~t~~------~d~~i~~w~~~~---------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 363 (577)
T 2ymu_A 302 HSSSVWGVAFSPD---GQTIASAS------DDKTVKLWNRNG---------QHLQTLTGHSSSVWGVAFSPDGQTIASAS 363 (577)
T ss_dssp CSSCEEEEEECTT---SSEEEEEE------TTSCEEEEETTS---------CEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCeEEEEECCC---CCEEEEEe------CCCeEEEEeCCC---------CeeEEEeCCCCCEEEEEECCCCCEEEEEe
Confidence 3578999999994 45666655 566699998652 12345788999999999999999999999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 162 (340)
.|+.+++|+.. ++....+. .|...|.+++|+|++++|++++.|+.|++||. +++.+..+..|...|.+++|
T Consensus 364 ~dg~v~~~~~~-~~~~~~~~-------~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~ 434 (577)
T 2ymu_A 364 DDKTVKLWNRN-GQLLQTLT-------GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAF 434 (577)
T ss_dssp TTSEEEEEETT-CCEEEEEE-------CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEE
T ss_pred CCCEEEEEcCC-CCEEEEec-------CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEE
Confidence 99999999964 33333332 27789999999999999999999999999995 56777778888889999999
Q ss_pred cCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec
Q 019482 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (340)
Q Consensus 163 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 242 (340)
+|++++|++++.|+.|++||. +++.+..+.. +...+.+++|+|+++. +++++.|+.|++||. +++.+..+..
T Consensus 435 s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~-~~~~v~~~~~spd~~~-----las~~~d~~i~iw~~-~~~~~~~~~~ 506 (577)
T 2ymu_A 435 SPDDQTIASASDDKTVKLWNR-NGQLLQTLTG-HSSSVRGVAFSPDGQT-----IASASDDKTVKLWNR-NGQLLQTLTG 506 (577)
T ss_dssp CTTSSEEEEEETTSEEEEEET-TSCEEEEEEC-CSSCEEEEEECTTSCE-----EEEEETTSEEEEEET-TSCEEEEEEC
T ss_pred CCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcC-CCCCEEEEEEcCCCCE-----EEEEeCCCEEEEEcC-CCCEEEEEeC
Confidence 999999999999999999996 5667777764 4568999999999997 788899999999995 6788889999
Q ss_pred cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482 243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK 316 (340)
Q Consensus 243 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~ 316 (340)
|...|++++|+|+|++|++++.||.|++||. +++.+..+ .+| ..+|++++|+|||++|++++.|+.|++||
T Consensus 507 h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~-~~h-~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 507 HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-TGH-SSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE-ECC-SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEE-cCC-CCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999999999999999999999999996 56666655 467 67999999999999999999999999996
No 29
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.4e-42 Score=317.28 Aligned_cols=290 Identities=11% Similarity=0.122 Sum_probs=239.0
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
+...|+|++|+|+.. .++++|+ .|+.|++|++...... .......+.+|...|.+++|+|++++|++|+
T Consensus 381 H~~~V~~v~~~~~~~--~~l~s~s------~D~~i~~W~~~~~~~~---~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs 449 (694)
T 3dm0_A 381 HTDMVTAIATPIDNA--DIIVSAS------RDKSIILWKLTKDDKA---YGVAQRRLTGHSHFVEDVVLSSDGQFALSGS 449 (694)
T ss_dssp CSSCEEEEECCTTCC--SEEEEEE------TTSEEEEEECCCSTTC---SCEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred CCceeEEEEecCCCC--CEEEEEe------CCCcEEEEEccCCCcc---cccccceecCCCCcEEEEEECCCCCEEEEEe
Confidence 567899999998643 5777666 5667999998754322 2344567899999999999999999999999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeec---cccCccceeE
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD---EPKAHKSVLD 159 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~---~~~~~~~i~~ 159 (340)
.|+.|++||+.++.....+. .|...|.+++|+|++++|++++.|++|++||+........ ...|...|.+
T Consensus 450 ~Dg~v~vwd~~~~~~~~~~~-------~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 522 (694)
T 3dm0_A 450 WDGELRLWDLAAGVSTRRFV-------GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSC 522 (694)
T ss_dssp TTSEEEEEETTTTEEEEEEE-------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEE
T ss_pred CCCcEEEEECCCCcceeEEe-------CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEE
Confidence 99999999999887766554 3788999999999999999999999999999865433222 2346678999
Q ss_pred EEecCCC--CeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEE
Q 019482 160 MDFSLDS--EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI 237 (340)
Q Consensus 160 ~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~ 237 (340)
++|+|++ ..+++++.|++|++||+++++....+.. |...|.+++|+|+++. +++++.|+.|++||+++++.+
T Consensus 523 ~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~-h~~~v~~v~~spdg~~-----l~sg~~Dg~i~iwd~~~~~~~ 596 (694)
T 3dm0_A 523 VRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG-HTGYVSTVAVSPDGSL-----CASGGKDGVVLLWDLAEGKKL 596 (694)
T ss_dssp EEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSE-----EEEEETTSBCEEEETTTTEEE
T ss_pred EEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC-CCCCEEEEEEeCCCCE-----EEEEeCCCeEEEEECCCCceE
Confidence 9999986 5799999999999999999988888764 4568999999999997 789999999999999999887
Q ss_pred eeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccc-----------------ccceeeEEEecCC
Q 019482 238 GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL-----------------GTSIALVEFCPTQ 300 (340)
Q Consensus 238 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----------------~~~i~~~~~~~~~ 300 (340)
..+.. ...+.+++|+|++.++++++ ++.|++||+++++.+..+..... ...+++++|+|||
T Consensus 597 ~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg 674 (694)
T 3dm0_A 597 YSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG 674 (694)
T ss_dssp ECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTS
T ss_pred EEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCC
Confidence 66654 45799999999998888775 56699999999887655421100 1137899999999
Q ss_pred eEEEEEecCCcEEEEEec
Q 019482 301 RVVLTASKEWGAMITKLT 318 (340)
Q Consensus 301 ~~l~~~~~dg~i~iw~~~ 318 (340)
++|++|+.||.|+||++.
T Consensus 675 ~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 675 STLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp SEEEEEETTSEEEEEEC-
T ss_pred CEEEEEcCCCeEEEEecc
Confidence 999999999999999984
No 30
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=6.2e-43 Score=297.92 Aligned_cols=287 Identities=16% Similarity=0.207 Sum_probs=231.2
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC-CCCeEEEE
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCS 81 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~ 81 (340)
+..+|+|++|+|+.. .++++|+ .++.|++|++.... ......+.+|...|.+++|+| ++++|+++
T Consensus 72 h~~~v~~~~~~~~~~--~~l~s~~------~dg~i~iwd~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 137 (383)
T 3ei3_B 72 FDRRVTSLEWHPTHP--TTVAVGS------KGGDIILWDYDVQN------KTSFIQGMGPGDAITGMKFNQFNTNQLFVS 137 (383)
T ss_dssp CSSCEEEEEECSSCT--TEEEEEE------BTSCEEEEETTSTT------CEEEECCCSTTCBEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEEECCCCC--CEEEEEc------CCCeEEEEeCCCcc------cceeeecCCcCCceeEEEeCCCCCCEEEEE
Confidence 457899999999542 5677666 56679999987322 222233457999999999999 78999999
Q ss_pred ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEE
Q 019482 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (340)
Q Consensus 82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~ 161 (340)
+.|+.|++||+.+... ..+... ..+...|.+++|+|++++|++++.|+.|++||+ +++.+..+..|...|.+++
T Consensus 138 ~~d~~i~iwd~~~~~~-~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~ 211 (383)
T 3ei3_B 138 SIRGATTLRDFSGSVI-QVFAKT----DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAE 211 (383)
T ss_dssp ETTTEEEEEETTSCEE-EEEECC----CCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEE
T ss_pred eCCCEEEEEECCCCce-EEEecc----CCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEE
Confidence 9999999999986432 222211 125578999999999999999999999999998 5677777888889999999
Q ss_pred ecCCCC-eEEEeeCCCeEEEEEccC----CeeEEEeecCCCCceeeEEEcc-CCCcceEEEEEecCCcceEEEEECCCCc
Q 019482 162 FSLDSE-FLATTSTDGSARIWKTED----GVAWTFLTRNSDEKIELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWN 235 (340)
Q Consensus 162 ~~~~~~-~l~~~~~d~~v~iwd~~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~d~~i~i~d~~~~~ 235 (340)
|+|+++ +|++++.|+.|++||+++ +..+..+ .+...+.+++|+| ++.. +++++.|+.|++||+++++
T Consensus 212 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~-----l~~~~~d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 212 FNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTK-----LLTTDQRNEIRVYSSYDWS 284 (383)
T ss_dssp ECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCE-----EEEEESSSEEEEEETTBTT
T ss_pred ECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCE-----EEEEcCCCcEEEEECCCCc
Confidence 999998 899999999999999998 5666666 3567899999999 9987 7888999999999999887
Q ss_pred EEeeeeccC-----------------CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEec
Q 019482 236 KIGHKRLLR-----------------KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298 (340)
Q Consensus 236 ~~~~~~~~~-----------------~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~ 298 (340)
.+..+..+. ..+..++|+|++++ +++.|+.|++||+.+++.+..+...++...+..++|+|
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~ 362 (383)
T 3ei3_B 285 KPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP 362 (383)
T ss_dssp SCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT
T ss_pred cccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEec
Confidence 766665442 23445667777776 77899999999999999887775433356777789999
Q ss_pred CCeEEEEEecCCcEEEEEecC
Q 019482 299 TQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 299 ~~~~l~~~~~dg~i~iw~~~~ 319 (340)
++++|++++ ||.|++|+++.
T Consensus 363 ~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 363 TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TSSEEEEEE-TTEEEEEECC-
T ss_pred CccEEEEec-CCcEEEEecCC
Confidence 999999997 99999999864
No 31
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=9.4e-43 Score=298.11 Aligned_cols=291 Identities=13% Similarity=0.062 Sum_probs=242.5
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCC----C---
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS----G--- 75 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~--- 75 (340)
+..+|+|++|+| .++++|+ .++.|++|+++...... .......+.+|...|.+++|+|+ +
T Consensus 15 h~~~i~~~~~~~-----~~l~s~~------~dg~i~iw~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~ 81 (397)
T 1sq9_A 15 HDADIFSVSACN-----SFTVSCS------GDGYLKVWDNKLLDNEN--PKDKSYSHFVHKSGLHHVDVLQAIERDAFEL 81 (397)
T ss_dssp SSSCEEEEEECS-----SEEEEEE------TTSEEEEEESBCCTTCC--GGGGEEEEECCTTCEEEEEEEEEEETTTEEE
T ss_pred hhcCeEEEEecC-----CeEEEEc------CCCEEEEEECCCccccc--CCCcceEEecCCCcEEEEEEecccccCCccc
Confidence 467999999988 3566555 56779999997543221 22345667899999999999999 9
Q ss_pred CeEEEEecCCCEEEEEecCcee-----eeeeccccCCCCCC-----CCCeEEEEEe----cCCCe-EEEccCCCcEEEEe
Q 019482 76 DDFVCSTTNGGCKLFEVYGGAT-----DINLLAKKMPPLQD-----AGPQKCLSFS----VDGSR-FAAGGVDGHLRIMH 140 (340)
Q Consensus 76 ~~l~~~~~d~~i~iw~~~~~~~-----~~~~~~~~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~~~d 140 (340)
++|++++.|+.|++|++.+.+. ...+.. | ...|.+++|+ |++++ |++++.||.|++||
T Consensus 82 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 154 (397)
T 1sq9_A 82 CLVATTSFSGDLLFYRITREDETKKVIFEKLDL-------LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK 154 (397)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTCCEEEEEECC-------SCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred cEEEEEcCCCCEEEEEccCCcccccccceeecc-------cccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEe
Confidence 9999999999999999987764 333221 3 4899999999 99999 99999999999999
Q ss_pred CCC------Cceee-----cc-------ccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecC--C---C
Q 019482 141 WPS------LRIIL-----DE-------PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN--S---D 197 (340)
Q Consensus 141 ~~~------~~~~~-----~~-------~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--~---~ 197 (340)
+++ ++.+. .+ ..+...|.+++|+|++ ++++++.|+.|++||+++++.+..+... + .
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~ 233 (397)
T 1sq9_A 155 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNS 233 (397)
T ss_dssp EESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCC
T ss_pred CCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccC
Confidence 988 66554 44 3366789999999999 9999999999999999999998888751 3 5
Q ss_pred CceeeEEEccCCCcceEEEEEecCCc---ceEEEEECCCCcEEeeeec-------------cCCCeeEEEECCCCCEEEE
Q 019482 198 EKIELCRFSKDGTKPFLFCTVQRGDK---ALLAVYDISTWNKIGHKRL-------------LRKPASVLSISLDGKYLAM 261 (340)
Q Consensus 198 ~~v~~~~~~~~~~~~~~~~~~~~~~d---~~i~i~d~~~~~~~~~~~~-------------~~~~i~~~~~s~~~~~l~~ 261 (340)
..+.+++|+|++.. +++++.| +.|++||+++++.+..+.. |...|.+++|+|++++|++
T Consensus 234 ~~i~~i~~~~~~~~-----l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 308 (397)
T 1sq9_A 234 NSIRSVKFSPQGSL-----LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS 308 (397)
T ss_dssp CCEEEEEECSSTTE-----EEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE
T ss_pred CccceEEECCCCCE-----EEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEE
Confidence 68999999999987 6788888 9999999999999988888 8999999999999999999
Q ss_pred eeCCCcEEEEeccCceEeecccc-----cc--------------cccceeeEEEecCC----------eEEEEEecCCcE
Q 019482 262 GSKDGDICVVDVKKMEINHWSKR-----LH--------------LGTSIALVEFCPTQ----------RVVLTASKEWGA 312 (340)
Q Consensus 262 ~~~dg~i~i~d~~~~~~~~~~~~-----~~--------------~~~~i~~~~~~~~~----------~~l~~~~~dg~i 312 (340)
++.||.|++||+++++.+..+.. .| +..+|.+++|+|++ ++|++++.||.|
T Consensus 309 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i 388 (397)
T 1sq9_A 309 AGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSI 388 (397)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEE
T ss_pred EeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcE
Confidence 99999999999999988877641 22 15689999999998 799999999999
Q ss_pred EEEEecC
Q 019482 313 MITKLTV 319 (340)
Q Consensus 313 ~iw~~~~ 319 (340)
++|++..
T Consensus 389 ~iw~~~~ 395 (397)
T 1sq9_A 389 RWFREAG 395 (397)
T ss_dssp EEEEEEC
T ss_pred EEEEcCC
Confidence 9999864
No 32
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-44 Score=311.48 Aligned_cols=307 Identities=13% Similarity=0.158 Sum_probs=232.7
Q ss_pred CCceeEEeeeeecCC------CccEEEEcCCC-------------CcccCCCceEEEEeCCCCCCcccCCeeeEEEecCC
Q 019482 3 GGGTVTCGSWIKRPE------NVNLVVLGKSS-------------RASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE 63 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~------~~~~~~~g~~~-------------~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~ 63 (340)
.+++|.|++|+|++. ..+++|+|... .+++.|+.|+||+++.... .......+.+|.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~----~~~~~~~l~~~~ 207 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTL----HCVKVQTIVHSF 207 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTC----CEEEEEEEEECC
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCC----CceEEEEEEecC
Confidence 368999999999762 22677776643 2356789999999874321 111234567888
Q ss_pred CCeeEEEEcCC------CCeEEEEecCCCEEEEEecCceeeee---ecccc-CCCCCCCCCeEEEEEecCCCeEEEccCC
Q 019482 64 GDPMTIAVNPS------GDDFVCSTTNGGCKLFEVYGGATDIN---LLAKK-MPPLQDAGPQKCLSFSVDGSRFAAGGVD 133 (340)
Q Consensus 64 ~~v~~~~~~~~------~~~l~~~~~d~~i~iw~~~~~~~~~~---~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d 133 (340)
+.|.+++|+|+ +.+||+++.||+|++||+..+..... ..... .....|...|.+++|++++ .|++|+.|
T Consensus 208 ~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~D 286 (524)
T 2j04_B 208 GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKN 286 (524)
T ss_dssp CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETT
T ss_pred CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCC
Confidence 99999999997 57999999999999999976542200 00000 0012377899999999864 89999999
Q ss_pred CcEEEEeCCCCce-eeccccCccceeEE--EecCCC-CeEEEeeCCCeEEEEEccCCeeEEEeecCCC-CceeeEEEccC
Q 019482 134 GHLRIMHWPSLRI-ILDEPKAHKSVLDM--DFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSD-EKIELCRFSKD 208 (340)
Q Consensus 134 g~i~~~d~~~~~~-~~~~~~~~~~i~~~--~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~ 208 (340)
|+|++||+++++. ...+..|...|.++ .|+|++ ++|++++.|++|+|||+++++++..+..+.. ..+.+++|+|+
T Consensus 287 gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~ 366 (524)
T 2j04_B 287 GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQ 366 (524)
T ss_dssp SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETT
T ss_pred CEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCC
Confidence 9999999987643 34467788899999 578887 8999999999999999998887766654433 24889999999
Q ss_pred CCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCc-----e------
Q 019482 209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM-----E------ 277 (340)
Q Consensus 209 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-----~------ 277 (340)
+.. +++++.|+.|++||++++..+..+..|...|++++|+|+|++|++|+.||.|++||+... +
T Consensus 367 ~~~-----l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~ 441 (524)
T 2j04_B 367 IYS-----YIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQ 441 (524)
T ss_dssp TTE-----EEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------C
T ss_pred cCe-----EEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccce
Confidence 986 788889999999999999888888899999999999999999999999999999986321 0
Q ss_pred ---Ee-ec----------------------------ccccccccceeeEEEecCCe---EEEEEecCCcEEEEEecCC
Q 019482 278 ---IN-HW----------------------------SKRLHLGTSIALVEFCPTQR---VVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 278 ---~~-~~----------------------------~~~~~~~~~i~~~~~~~~~~---~l~~~~~dg~i~iw~~~~~ 320 (340)
.+ .. ...+| ...|.+++|+|+++ ++|+|+.||.|+||++...
T Consensus 442 ~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh-~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 442 KSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAH-GINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CCCEEEECBCCSSSCEEEECCCCCCCC-------------C-CCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred eeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCC-CceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 00 00 00123 46899999999964 9999999999999998644
No 33
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.3e-43 Score=301.57 Aligned_cols=276 Identities=13% Similarity=0.147 Sum_probs=229.3
Q ss_pred CCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc
Q 019482 52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131 (340)
Q Consensus 52 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 131 (340)
.......+.+|.+.|++++|+|++++|++|+.|++|++||+.+++....+.. |...|.+++|+|++++|++|+
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-------h~~~v~~~~~s~~g~~las~~ 127 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL-------HCPWVMECAFAPNGQSVACGG 127 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC-------CCTTCCCCEECTTSSEEEECC
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEec-------CCCCEEEEEECCCCCEEEEee
Confidence 4556678999999999999999999999999999999999998877655543 678899999999999999999
Q ss_pred CCCcEEEEeCCCCc-------eeeccccCccceeEEEecCC-CCeEEEeeCCCeEEEEEccCCeeEEEee----cCCCCc
Q 019482 132 VDGHLRIMHWPSLR-------IILDEPKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLT----RNSDEK 199 (340)
Q Consensus 132 ~dg~i~~~d~~~~~-------~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~~~ 199 (340)
.|+.+++||+.+.. ....+.+|...+.++.|.|+ +..|++|+.|++|++||+++++.+..+. ..+...
T Consensus 128 ~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~ 207 (380)
T 3iz6_a 128 LDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTAD 207 (380)
T ss_dssp SSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSC
T ss_pred CCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccC
Confidence 99999999987532 23345677788999999996 4579999999999999999999887663 345567
Q ss_pred eeeEEEcc-CCCcceEEEEEecCCcceEEEEECC-CCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce
Q 019482 200 IELCRFSK-DGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME 277 (340)
Q Consensus 200 v~~~~~~~-~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 277 (340)
+.+++|++ ++.. +++++.|+.|++||++ ..+.+..+..|...|.+++|+|++++|++++.||.|++||+++++
T Consensus 208 v~~~~~~~~~~~~-----l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~ 282 (380)
T 3iz6_a 208 VLSLSINSLNANM-----FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH 282 (380)
T ss_dssp EEEEEECSSSCCE-----EEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE
T ss_pred eEEEEeecCCCCE-----EEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc
Confidence 99999987 5665 7899999999999998 456777888999999999999999999999999999999999998
Q ss_pred Eeeccccccc-----ccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCC-ccccccccccccC
Q 019482 278 INHWSKRLHL-----GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGL-SLPLLHSHSQNSV 339 (340)
Q Consensus 278 ~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~h~~~v~~v 339 (340)
.+..+..... ...|++++|+|+|++|++|+.||.|++|++........+ .....|.+.|+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l 350 (380)
T 3iz6_a 283 QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL 350 (380)
T ss_dssp EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEE
T ss_pred EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEE
Confidence 8765532211 124899999999999999999999999998655432221 2335688777765
No 34
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-43 Score=302.14 Aligned_cols=296 Identities=14% Similarity=0.170 Sum_probs=242.5
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCC----cccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEE
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSR----ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC 80 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~----~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 80 (340)
.+|.+++|+|+.. .++++|...+ +.+.++.|++|++...... .... ...|...|.+++|+|++++|++
T Consensus 13 ~~v~~~~~sp~g~--~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~-----~~~~-~~~~~~~v~~~~~s~~~~~l~~ 84 (416)
T 2pm9_A 13 SRTATFAWSHDKI--PLLVSGTVSGTVDANFSTDSSLELWSLLAADSE-----KPIA-SLQVDSKFNDLDWSHNNKIIAG 84 (416)
T ss_dssp EESCBCCBCSSSS--CEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC-----SCSC-CCCCSSCEEEEEECSSSSCEEE
T ss_pred hhcceEeeCCCCC--CEEEEEecCcccccccCCCCeEEEEEccCCCCC-----cEEE-EEecCCceEEEEECCCCCeEEE
Confidence 5789999999533 4788775433 1147888999998743211 0111 1248889999999999999999
Q ss_pred EecCCCEEEEEecCc----eeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeCCCCc------eeec
Q 019482 81 STTNGGCKLFEVYGG----ATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLR------IILD 149 (340)
Q Consensus 81 ~~~d~~i~iw~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~------~~~~ 149 (340)
++.|+.|++||+... +....+. .|...|.+++|+|+ +++|++++.|+.|++||+.+++ ....
T Consensus 85 ~~~dg~v~vw~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 157 (416)
T 2pm9_A 85 ALDNGSLELYSTNEANNAINSMARFS-------NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLT 157 (416)
T ss_dssp EESSSCEEEECCSSTTSCCCEEEECC-------CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBC
T ss_pred EccCCeEEEeecccccccccchhhcc-------CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccc
Confidence 999999999999872 2222221 37789999999998 8999999999999999999876 3322
Q ss_pred ---cccCccceeEEEecCC-CCeEEEeeCCCeEEEEEccCCeeEEEeecCC-----CCceeeEEEccCCCcceEEEEEec
Q 019482 150 ---EPKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNS-----DEKIELCRFSKDGTKPFLFCTVQR 220 (340)
Q Consensus 150 ---~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~ 220 (340)
...|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..+. ...+.+++|+|++... ++++
T Consensus 158 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----l~~~ 233 (416)
T 2pm9_A 158 PGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTR----VATA 233 (416)
T ss_dssp CCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTE----EEEE
T ss_pred cccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCE----EEEE
Confidence 3456778999999998 7899999999999999999999988887543 5689999999998542 6777
Q ss_pred CCcc---eEEEEECCCC-cEEeeee-ccCCCeeEEEECC-CCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeE
Q 019482 221 GDKA---LLAVYDISTW-NKIGHKR-LLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALV 294 (340)
Q Consensus 221 ~~d~---~i~i~d~~~~-~~~~~~~-~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~ 294 (340)
+.|+ .|++||++++ .++..+. .|...+.+++|+| ++++|++++.||.|++||+++++.+..+. .| ...|.++
T Consensus 234 ~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~-~~-~~~v~~~ 311 (416)
T 2pm9_A 234 TGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP-AR-GNWCFKT 311 (416)
T ss_dssp ECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE-CS-SSCCCCE
T ss_pred ECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec-CC-CCceEEE
Confidence 7787 9999999986 5666677 7889999999999 99999999999999999999998887664 55 5789999
Q ss_pred EEecCC-eEEEEEecCCcEEEEEecCCC
Q 019482 295 EFCPTQ-RVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 295 ~~~~~~-~~l~~~~~dg~i~iw~~~~~~ 321 (340)
+|+|++ .+|++++.||.|++|++....
T Consensus 312 ~~s~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 312 KFAPEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp EECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred EECCCCCCEEEEEecCCcEEEEEccCCC
Confidence 999999 899999999999999997654
No 35
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.9e-41 Score=283.94 Aligned_cols=291 Identities=12% Similarity=0.143 Sum_probs=240.5
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
+.++|+|++|+|+.+ .++++|+ .|+.|++|++...... .......+.+|...|.+++|+|++++|++++
T Consensus 37 H~~~V~~v~~sp~~~--~~l~S~s------~D~~i~vWd~~~~~~~---~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~ 105 (340)
T 4aow_A 37 HNGWVTQIATTPQFP--DMILSAS------RDKTIIMWKLTRDETN---YGIPQRALRGHSHFVSDVVISSDGQFALSGS 105 (340)
T ss_dssp CSSCEEEEEECTTCT--TEEEEEE------TTSCEEEEEECCSSSC---SEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred ccCCEEEEEEeCCCC--CEEEEEc------CCCeEEEEECCCCCcc---cceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence 468899999999643 6788776 5667999999754322 2345567899999999999999999999999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCcee-eccccCccceeEEE
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-LDEPKAHKSVLDMD 161 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~~~~~~~i~~~~ 161 (340)
.|+.|++|+............ +...+....+++++++|++++.|+.+++||+...... .....|...+..++
T Consensus 106 ~d~~i~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~ 178 (340)
T 4aow_A 106 WDGTLRLWDLTTGTTTRRFVG-------HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR 178 (340)
T ss_dssp TTSEEEEEETTTTEEEEEEEC-------CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEE
T ss_pred ccccceEEeecccceeeeecC-------CCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceE
Confidence 999999999988776554432 5578889999999999999999999999998765543 34456667899999
Q ss_pred ecCCC--CeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee
Q 019482 162 FSLDS--EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (340)
Q Consensus 162 ~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~ 239 (340)
|++++ .++++++.|+.|++||+++++.+..+.. +...|.+++|+|+++. +++++.|+.|++||+++.+.+..
T Consensus 179 ~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~-h~~~v~~~~~s~~~~~-----l~s~s~Dg~i~iwd~~~~~~~~~ 252 (340)
T 4aow_A 179 FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG-HTGYLNTVTVSPDGSL-----CASGGKDGQAMLWDLNEGKHLYT 252 (340)
T ss_dssp ECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSE-----EEEEETTCEEEEEETTTTEEEEE
T ss_pred EccCCCCcEEEEEcCCCEEEEEECCCCceeeEecC-CCCcEEEEEECCCCCE-----EEEEeCCCeEEEEEeccCceeee
Confidence 98864 4688999999999999999999888875 4568999999999997 78899999999999999998877
Q ss_pred eeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc--------ccccccceeeEEEecCCeEEEEEecCCc
Q 019482 240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK--------RLHLGTSIALVEFCPTQRVVLTASKEWG 311 (340)
Q Consensus 240 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 311 (340)
+..+ ..+.++.|+|++.++ +++.|+.|++||++++.....+. ..| ...|++++|+||+++|++|+.||.
T Consensus 253 ~~~~-~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~Dg~ 329 (340)
T 4aow_A 253 LDGG-DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE-PPQCTSLAWSADGQTLFAGYTDNL 329 (340)
T ss_dssp EECS-SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CC-CCCEEEEEECTTSSEEEEEETTSC
T ss_pred ecCC-ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCC-CCCEEEEEECCCCCEEEEEeCCCE
Confidence 7654 579999999987655 55679999999999877654432 234 568999999999999999999999
Q ss_pred EEEEEecCC
Q 019482 312 AMITKLTVP 320 (340)
Q Consensus 312 i~iw~~~~~ 320 (340)
|+||++...
T Consensus 330 v~iW~~~tG 338 (340)
T 4aow_A 330 VRVWQVTIG 338 (340)
T ss_dssp EEEEEEEC-
T ss_pred EEEEeCCCc
Confidence 999999754
No 36
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.7e-43 Score=306.14 Aligned_cols=291 Identities=16% Similarity=0.170 Sum_probs=227.6
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC-CCCeEEEEe
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCST 82 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~ 82 (340)
..+|+|++|+|..+ .+||+|+ .++.|++|+++... ......+.+|.+.|++++|+| ++.+|++++
T Consensus 119 ~~~V~~l~~~P~~~--~~lasGs------~dg~i~lWd~~~~~------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s 184 (435)
T 4e54_B 119 DRRATSLAWHPTHP--STVAVGS------KGGDIMLWNFGIKD------KPTFIKGIGAGGSITGLKFNPLNTNQFYASS 184 (435)
T ss_dssp SSCEEEEEECSSCT--TCEEEEE------TTSCEEEECSSCCS------CCEEECCCSSSCCCCEEEECSSCTTEEEEEC
T ss_pred CCCEEEEEEeCCCC--CEEEEEe------CCCEEEEEECCCCC------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEe
Confidence 45799999999543 5777776 56669999886432 223345678999999999998 688999999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 162 (340)
.|++|++||+++......... ..+...+.+++|+|++++|++|+.||.|++||++. +.+..+..|...|.+++|
T Consensus 185 ~D~~v~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~ 258 (435)
T 4e54_B 185 MEGTTRLQDFKGNILRVFASS-----DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVAL 258 (435)
T ss_dssp SSSCEEEEETTSCEEEEEECC-----SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEE
T ss_pred CCCEEEEeeccCCceeEEecc-----CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeee
Confidence 999999999987654322211 12445678999999999999999999999999864 556677788889999999
Q ss_pred cCCCC-eEEEeeCCCeEEEEEccCCeeEEEee--cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee
Q 019482 163 SLDSE-FLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (340)
Q Consensus 163 ~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~ 239 (340)
+|+++ +|++++.|+.|++||+++.+....+. ..|...|.+++|+|++.+ +++++.|+.|++||+++++....
T Consensus 259 ~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~-----l~s~~~D~~i~iwd~~~~~~~~~ 333 (435)
T 4e54_B 259 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR-----LLTTDQKSEIRVYSASQWDCPLG 333 (435)
T ss_dssp CTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSE-----EEEEESSSCEEEEESSSSSSEEE
T ss_pred cCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCe-----eEEEcCCCEEEEEECCCCccceE
Confidence 99876 68899999999999998876544332 345678999999999997 78999999999999999887666
Q ss_pred eeccCC------CeeEEEECCCCCEEEEee------------CCCcEEEEeccCceEeecccccccccceeeE-EEecCC
Q 019482 240 KRLLRK------PASVLSISLDGKYLAMGS------------KDGDICVVDVKKMEINHWSKRLHLGTSIALV-EFCPTQ 300 (340)
Q Consensus 240 ~~~~~~------~i~~~~~s~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~-~~~~~~ 300 (340)
+..+.. ......|+|++.++++++ .++.|++||..+++.+..+...| ...|.++ +|+|+|
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~s~~~fspdg 412 (435)
T 4e54_B 334 LIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGISSLNEFNPMG 412 (435)
T ss_dssp ECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCCCEEEECTTS
T ss_pred EecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEEEEEEECCCC
Confidence 655432 233456777777766654 34579999999999888776566 5678887 699999
Q ss_pred eEEEEEecCCcEEEEEecCCC
Q 019482 301 RVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 301 ~~l~~~~~dg~i~iw~~~~~~ 321 (340)
++|++|+ |+.|+||+++...
T Consensus 413 ~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 413 DTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp SCEEEEC-SSEEEECCCC---
T ss_pred CEEEEEc-CCcEEEEECCcCe
Confidence 9999876 7899999987543
No 37
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.7e-43 Score=293.24 Aligned_cols=258 Identities=13% Similarity=0.121 Sum_probs=206.0
Q ss_pred EEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCcee--eeeeccccCCCCCCCCCeEEEEEec--CCCeEEEccC
Q 019482 57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT--DINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGV 132 (340)
Q Consensus 57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~ 132 (340)
..+.+|.+.|++++|+|+|++||+|+.|++|++||+.++.. ...+. .|.++|.+++|+| ++++|++++.
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~-------gH~~~V~~v~~~~~~~~~~l~s~s~ 79 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLR-------GHEGPVWQVAWAHPMYGNILASCSY 79 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEE-------CCSSCEEEEEECCGGGSSCEEEEET
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEc-------CCCccEEEEEeCCCCCCCEEEEEEC
Confidence 45678999999999999999999999999999999987643 22222 3889999999986 4899999999
Q ss_pred CCcEEEEeCCCCc--eeeccccCccceeEEEecCC--CCeEEEeeCCCeEEEEEccCCeeE--EEeecCCCCceeeEEEc
Q 019482 133 DGHLRIMHWPSLR--IILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVAW--TFLTRNSDEKIELCRFS 206 (340)
Q Consensus 133 dg~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~~~~v~~~~~~ 206 (340)
|++|++||+++++ ....+.+|...|.+++|+|+ +.+|++++.|++|++||++.+... ......+...+.+++|+
T Consensus 80 D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 159 (316)
T 3bg1_A 80 DRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWA 159 (316)
T ss_dssp TSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEEC
T ss_pred CCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEc
Confidence 9999999998764 45556678889999999997 789999999999999999876332 22223455679999999
Q ss_pred cCC-----------------CcceEEEEEecCCcceEEEEECCCC---cEEeeeeccCCCeeEEEECCCC----CEEEEe
Q 019482 207 KDG-----------------TKPFLFCTVQRGDKALLAVYDISTW---NKIGHKRLLRKPASVLSISLDG----KYLAMG 262 (340)
Q Consensus 207 ~~~-----------------~~~~~~~~~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~s~~~----~~l~~~ 262 (340)
|+. +. +++++.|+.|++||++.. +.+..+..|...|.+++|+|++ ++|+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~-----l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~ 234 (316)
T 3bg1_A 160 PAVVPGSLIDHPSGQKPNYIKR-----FASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASC 234 (316)
T ss_dssp CCCCC------CCSCCCCCCCB-----EECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEE
T ss_pred cccCCccccccccccCccccce-----EEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEE
Confidence 983 33 789999999999999765 4566788899999999999986 899999
Q ss_pred eCCCcEEEEeccCc---eEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCc
Q 019482 263 SKDGDICVVDVKKM---EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLS 327 (340)
Q Consensus 263 ~~dg~i~i~d~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 327 (340)
+.|+.|++||+.+. +........| ...|.+++|+|++++|++++.|+.|++|+......+....
T Consensus 235 s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g~~~~~~ 301 (316)
T 3bg1_A 235 SQDGRVFIWTCDDASSNTWSPKLLHKF-NDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCIS 301 (316)
T ss_dssp ETTCEEEEEECSSTTCCCCBCCEEEEC-SSCEEEEEECTTTCCEEEEESSSCEEEEEECTTSCEEEEE
T ss_pred cCCCeEEEEEccCccccchhhhhhhcC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCCcEEEee
Confidence 99999999998762 1111122344 5789999999999999999999999999997666554443
No 38
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-42 Score=288.76 Aligned_cols=284 Identities=14% Similarity=0.084 Sum_probs=243.2
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
+..+|++++|+| +..++++|+ .++.|.+|++. .......+.+|...|.+++|+|++++|++++
T Consensus 31 h~~~v~~~~~s~---~~~~l~~~~------~dg~i~vwd~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 93 (369)
T 3zwl_B 31 HERPLTQVKYNK---EGDLLFSCS------KDSSASVWYSL--------NGERLGTLDGHTGTIWSIDVDCFTKYCVTGS 93 (369)
T ss_dssp CSSCEEEEEECT---TSCEEEEEE------SSSCEEEEETT--------TCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred eeceEEEEEEcC---CCCEEEEEe------CCCEEEEEeCC--------CchhhhhhhhcCCcEEEEEEcCCCCEEEEEe
Confidence 467899999999 445677665 56669999987 4445567889999999999999999999999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC-----CcEEEEeCCCCce-----------
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRIMHWPSLRI----------- 146 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~----------- 146 (340)
.|+.|++||+.+++....+. +...+.+++|+|+++++++++.+ +.|++||+.....
T Consensus 94 ~dg~i~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~ 165 (369)
T 3zwl_B 94 ADYSIKLWDVSNGQCVATWK--------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEP 165 (369)
T ss_dssp TTTEEEEEETTTCCEEEEEE--------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSC
T ss_pred CCCeEEEEECCCCcEEEEee--------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccce
Confidence 99999999999887655543 55789999999999999999988 9999999876532
Q ss_pred eeccccCcc--ceeEEEecCCCCeEEEeeCCCeEEEEEccC-CeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCc
Q 019482 147 ILDEPKAHK--SVLDMDFSLDSEFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK 223 (340)
Q Consensus 147 ~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d 223 (340)
...+..+.. .+.+++|+|++++|++++.|+.|++||+++ .+.+..+.. +...+.+++|+|++.. +++++.|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~-----l~~~~~d 239 (369)
T 3zwl_B 166 IHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL-HEKSISDMQFSPDLTY-----FITSSRD 239 (369)
T ss_dssp SEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC-CSSCEEEEEECTTSSE-----EEEEETT
T ss_pred eeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec-CCCceeEEEECCCCCE-----EEEecCC
Confidence 223333444 899999999999999999999999999998 677776664 4568999999999987 7888899
Q ss_pred ceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCC--------------cEEEEeccCceEeeccccccccc
Q 019482 224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG--------------DICVVDVKKMEINHWSKRLHLGT 289 (340)
Q Consensus 224 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~~~ 289 (340)
+.|++||+++++.+..+. +...+..++|+|+++++++++.++ .+++||+.+++.+..+ ..| ..
T Consensus 240 ~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~-~~ 316 (369)
T 3zwl_B 240 TNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV-QGH-FG 316 (369)
T ss_dssp SEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE-ECC-SS
T ss_pred ceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe-ecc-cC
Confidence 999999999999887776 677899999999999999999888 8999999999888766 356 57
Q ss_pred ceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482 290 SIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 290 ~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
.|.+++|+|++++|++++.||.|++|+++..
T Consensus 317 ~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 317 PLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 9999999999999999999999999999754
No 39
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.1e-42 Score=308.13 Aligned_cols=295 Identities=16% Similarity=0.203 Sum_probs=248.1
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
...+|.+++|+|+ ...+++++ .++.+++|+.+ ......+.+|...|.+++|+|++++|++++
T Consensus 261 ~~~~v~~v~~~~d---~~~l~~~~------~d~~i~~w~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~ 322 (577)
T 2ymu_A 261 HSSSVNGVAFRPD---GQTIASAS------DDKTVKLWNRN---------GQLLQTLTGHSSSVWGVAFSPDGQTIASAS 322 (577)
T ss_dssp CSSCEEEEEECTT---SSEEEEEE------TTSCEEEEETT---------SCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCEEEEEEcCC---CCEEEEEe------CCCEEEEEeCC---------CcEEEEEecCCCCeEEEEECCCCCEEEEEe
Confidence 4578999999994 45666555 56669999854 223456789999999999999999999999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 162 (340)
.|+.|++||....... .+. .|...+.+++|+|++++|++++.|+.|++||. +++.+..+..|...|.+++|
T Consensus 323 ~d~~i~~w~~~~~~~~-~~~-------~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~ 393 (577)
T 2ymu_A 323 DDKTVKLWNRNGQHLQ-TLT-------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAF 393 (577)
T ss_dssp TTSCEEEEETTSCEEE-EEC-------CCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEE
T ss_pred CCCeEEEEeCCCCeeE-EEe-------CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEE
Confidence 9999999998765432 221 36789999999999999999999999999995 56777778888889999999
Q ss_pred cCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec
Q 019482 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (340)
Q Consensus 163 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 242 (340)
+|++++|++++.|+.|++||. +++.+..+.. +...|.+++|+|+++. +++++.|+.|++||. +++.+..+..
T Consensus 394 s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~-~~~~v~~~~~s~d~~~-----l~~~~~d~~v~~w~~-~~~~~~~~~~ 465 (577)
T 2ymu_A 394 SPDGQTIASASDDKTVKLWNR-NGQLLQTLTG-HSSSVWGVAFSPDDQT-----IASASDDKTVKLWNR-NGQLLQTLTG 465 (577)
T ss_dssp CTTSSCEEEEETTSEEEEECT-TCCEEEEEEC-CSSCEEEEEECTTSSE-----EEEEETTSEEEEEET-TSCEEEEEEC
T ss_pred CCCCCEEEEEeCCCEEEEEeC-CCCEEEEecC-CCCCeEEEEECCCCCE-----EEEEcCCCEEEEEEC-CCCEEEEEcC
Confidence 999999999999999999995 5677777764 4568999999999997 788899999999996 5677788899
Q ss_pred cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482 243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD 322 (340)
Q Consensus 243 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (340)
|...+.+++|+|++++|++++.|+.|++||. +++.+..+ ..| ...|++++|+||+++|++++.||.|++|+.. .
T Consensus 466 ~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~-~~h-~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~--~- 539 (577)
T 2ymu_A 466 HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-TGH-SSSVRGVAFSPDGQTIASASDDKTVKLWNRN--G- 539 (577)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE-ECC-SSCEEEEEECTTSSCEEEEETTSEEEEECTT--S-
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE-eCC-CCCEEEEEEcCCCCEEEEEECcCEEEEEeCC--C-
Confidence 9999999999999999999999999999996 56666555 456 5799999999999999999999999999953 2
Q ss_pred CCCCccccccccccccC
Q 019482 323 WKGLSLPLLHSHSQNSV 339 (340)
Q Consensus 323 ~~~~~~~~~h~~~v~~v 339 (340)
+.+.....|...|.+|
T Consensus 540 -~~~~~~~~h~~~v~~~ 555 (577)
T 2ymu_A 540 -QLLQTLTGHSSSVWGV 555 (577)
T ss_dssp -CEEEEEECCSSCEEEE
T ss_pred -CEEEEEcCCCCCEEEE
Confidence 3455667888888765
No 40
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.1e-43 Score=303.38 Aligned_cols=284 Identities=13% Similarity=0.120 Sum_probs=231.4
Q ss_pred eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCC
Q 019482 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (340)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~ 86 (340)
+++++|+|+ +.++++|+ .++.+.+|++..... ...+..| ..+....|+|++++|++++.|+.
T Consensus 59 ~~~~~~s~~---g~~l~~~~------~d~~v~i~d~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~ 120 (420)
T 3vl1_A 59 GKGNTFEKV---GSHLYKAR------LDGHDFLFNTIIRDG--------SKMLKRA-DYTAVDTAKLQMRRFILGTTEGD 120 (420)
T ss_dssp CTTCEEEEE---ETTEEEEE------ETTEEEEEECCSEET--------TTTSCSC-CEEEEEEECSSSCEEEEEETTSC
T ss_pred ccceeeeec---CCeEEEEE------cCCcEEEEEecccce--------eeEEecC-CceEEEEEecCCCEEEEEECCCC
Confidence 457899995 34556555 567799999863221 1223334 34555578999999999999999
Q ss_pred EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCC
Q 019482 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS 166 (340)
Q Consensus 87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 166 (340)
|++||+.+++....+. .|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|...|.+++|+|++
T Consensus 121 i~iwd~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 193 (420)
T 3vl1_A 121 IKVLDSNFNLQREIDQ-------AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG 193 (420)
T ss_dssp EEEECTTSCEEEEETT-------SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT
T ss_pred EEEEeCCCcceeeecc-------cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC
Confidence 9999998776544332 378999999999999999999999999999999999888888888999999999999
Q ss_pred CeEEEeeCCCeEEEEEccCCeeEEEeecC--C---------------------CCceeeEEEccCCCcceEEEEEecCCc
Q 019482 167 EFLATTSTDGSARIWKTEDGVAWTFLTRN--S---------------------DEKIELCRFSKDGTKPFLFCTVQRGDK 223 (340)
Q Consensus 167 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--~---------------------~~~v~~~~~~~~~~~~~~~~~~~~~~d 223 (340)
++|++++.|+.|++||+++++.+..+..+ + ...+.+++|+|+++. +++++.|
T Consensus 194 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-----l~~~~~d 268 (420)
T 3vl1_A 194 RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY-----VIAGHVS 268 (420)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEE-----EEEEETT
T ss_pred CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCE-----EEEEcCC
Confidence 99999999999999999999988887642 1 234556667888876 7888999
Q ss_pred ceEEEEECCCCcEEeeee-ccCCCeeEEEECCCCC-EEEEeeCCCcEEEEeccCceE-eecccccccccceeeEEEecCC
Q 019482 224 ALLAVYDISTWNKIGHKR-LLRKPASVLSISLDGK-YLAMGSKDGDICVVDVKKMEI-NHWSKRLHLGTSIALVEFCPTQ 300 (340)
Q Consensus 224 ~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~ 300 (340)
+.|++||+++++.+..+. .+...+.+++|+|+++ +|++++.||.|++||+++++. +..+ ..|+...+..+.| +++
T Consensus 269 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~~~~~~v~~~~~-~~~ 346 (420)
T 3vl1_A 269 GVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEF-LINEGTPINNVYF-AAG 346 (420)
T ss_dssp SCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE-EESTTSCEEEEEE-ETT
T ss_pred CeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhh-hccCCCCceEEEe-CCC
Confidence 999999999998776664 4678999999999998 999999999999999998754 4444 3434678888855 678
Q ss_pred eEEEEEecCCcEEEEEecCCCC
Q 019482 301 RVVLTASKEWGAMITKLTVPAD 322 (340)
Q Consensus 301 ~~l~~~~~dg~i~iw~~~~~~~ 322 (340)
++|++++.||.|++|++..+..
T Consensus 347 ~~l~s~~~d~~v~iw~~~~~~~ 368 (420)
T 3vl1_A 347 ALFVSSGFDTSIKLDIISDPES 368 (420)
T ss_dssp EEEEEETTTEEEEEEEECCTTC
T ss_pred CEEEEecCCccEEEEeccCCCC
Confidence 9999999999999999987644
No 41
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2e-43 Score=298.75 Aligned_cols=291 Identities=12% Similarity=0.153 Sum_probs=233.6
Q ss_pred CCceeEEeeeeecC--CCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCC----CC
Q 019482 3 GGGTVTCGSWIKRP--ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS----GD 76 (340)
Q Consensus 3 ~~~~v~~~~w~~~~--~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~ 76 (340)
+..+|++++|+|.. .+..+++ ++.++.|.+|++...... ..........|...|.+++|+|+ +.
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~-------~~~~~~v~vw~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 86 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFA-------TVGSNRVTLYECHSQGEI---RLLQSYVDADADENFYTCAWTYDSNTSHP 86 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEE-------EEETTEEEEEEECGGGCE---EEEEEEECSCTTCCEEEEEEEECTTTCCE
T ss_pred CCCceEEEEEecccCCCCceEEE-------ECCCCEEEEEEcCCCcEE---EeeeeccccCCCCcEEEEEeccCCCCCCC
Confidence 46899999999952 2233555 224456999998732211 01111112237788999999998 67
Q ss_pred eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCCceeecc---cc
Q 019482 77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDE---PK 152 (340)
Q Consensus 77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~ 152 (340)
+|++++.||.|++||+.+++....+. .|...|.+++|+| ++++|++++.||.|++||+++++....+ ..
T Consensus 87 ~l~~~~~dg~i~v~d~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 159 (366)
T 3k26_A 87 LLAVAGSRGIIRIINPITMQCIKHYV-------GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG 159 (366)
T ss_dssp EEEEEETTCEEEEECTTTCCEEEEEE-------SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTS
T ss_pred EEEEecCCCEEEEEEchhceEeeeec-------CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccc
Confidence 99999999999999999887665553 2778999999999 8999999999999999999998887766 56
Q ss_pred CccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeec---------------------------CCCCceeeEEE
Q 019482 153 AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR---------------------------NSDEKIELCRF 205 (340)
Q Consensus 153 ~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---------------------------~~~~~v~~~~~ 205 (340)
|...|.+++|+|++++|++++.|+.|++||+++++....+.. .+...|.+++|
T Consensus 160 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (366)
T 3k26_A 160 HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW 239 (366)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE
T ss_pred ccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE
Confidence 778999999999999999999999999999987655433221 25678999999
Q ss_pred ccCCCcceEEEEEecCCcceEEEEECCCCcE--------------EeeeeccCCCeeEEEECCC--CCEEEEeeCCCcEE
Q 019482 206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNK--------------IGHKRLLRKPASVLSISLD--GKYLAMGSKDGDIC 269 (340)
Q Consensus 206 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--------------~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~ 269 (340)
+ +.. +++++.|+.|++||+++++. +..+..+...+.+++|+|+ +++|++++.||.|+
T Consensus 240 ~--~~~-----l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~ 312 (366)
T 3k26_A 240 L--GDL-----ILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLY 312 (366)
T ss_dssp E--TTE-----EEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEE
T ss_pred c--CCE-----EEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEE
Confidence 9 444 78899999999999987644 6777888889999999999 99999999999999
Q ss_pred EEeccCceEee----cccccc-cccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 270 VVDVKKMEINH----WSKRLH-LGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 270 i~d~~~~~~~~----~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
+||+.+++... .+ ..| +...|++++|+|++++|++++.||.|++|++.
T Consensus 313 vwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 313 VWDLEVEDPHKAKCTTL-THHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEECCSSSGGGCEEEEE-CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEECCCCCCccccceEE-cccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 99999876432 22 222 14789999999999999999999999999974
No 42
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-43 Score=301.05 Aligned_cols=283 Identities=12% Similarity=0.119 Sum_probs=219.3
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
..+|+|++|+| ++.++++|+ .++.|++|++.... +.....+.+|...|.+++|+|++++|++++.
T Consensus 11 ~~~v~~~~~s~---~g~~l~~~~------~d~~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~ 75 (377)
T 3dwl_C 11 PKPSYEHAFNS---QRTEFVTTT------ATNQVELYEQDGNG------WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQ 75 (377)
T ss_dssp SSCCSCCEECS---SSSEEECCC------SSSCBCEEEEETTE------EEECCCBCCCSSCEEEEEECTTTCCEEEEET
T ss_pred CCcEEEEEECC---CCCEEEEec------CCCEEEEEEccCCc------eEEEEEEecCCceEEEEEEeCCCCEEEEEeC
Confidence 57899999999 445777665 56679999997321 1444567889999999999999999999999
Q ss_pred CCCEEEEEecCce---eeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCce---eecccc-Cccc
Q 019482 84 NGGCKLFEVYGGA---TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI---ILDEPK-AHKS 156 (340)
Q Consensus 84 d~~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---~~~~~~-~~~~ 156 (340)
|+.|++||+.++. ....+ ..|...|.+++|+|++++|++++.|+.|++||+++++. ...+.. |...
T Consensus 76 d~~v~vwd~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~ 148 (377)
T 3dwl_C 76 DRNAYVYEKRPDGTWKQTLVL-------LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRST 148 (377)
T ss_dssp TSSEEEC------CCCCEEEC-------CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSC
T ss_pred CCeEEEEEcCCCCceeeeeEe-------cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCC
Confidence 9999999998876 22111 23778999999999999999999999999999998763 555655 7789
Q ss_pred eeEEEecCCCCeEEEeeCCCeEEEEEcc------------------CCeeEEEeecCCCCceeeEEEccCCCcceEEEEE
Q 019482 157 VLDMDFSLDSEFLATTSTDGSARIWKTE------------------DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218 (340)
Q Consensus 157 i~~~~~~~~~~~l~~~~~d~~v~iwd~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 218 (340)
|.+++|+|++++|++++.|+.|++||++ .++++..+ .+...|.+++|+|+++. ++
T Consensus 149 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~-----l~ 221 (377)
T 3dwl_C 149 ILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNA-----LA 221 (377)
T ss_dssp EEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSC-----EE
T ss_pred eEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCE-----EE
Confidence 9999999999999999999999999985 24455555 56678999999999997 78
Q ss_pred ecCCcceEEEEECCCCcE----EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE--e-------------
Q 019482 219 QRGDKALLAVYDISTWNK----IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI--N------------- 279 (340)
Q Consensus 219 ~~~~d~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~--~------------- 279 (340)
+++.|+.|++||+++++. +..+..|...+.+++|+|++++|++++.++.+ +|+...... .
T Consensus 222 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (377)
T 3dwl_C 222 YAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFT 300 (377)
T ss_dssp EEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBS
T ss_pred EEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccc
Confidence 899999999999999887 77888999999999999999999999766655 776642110 0
Q ss_pred ------------------------------------ecccccccccceeeEEEecCC-e---EEEEEecCCcEEEEEe
Q 019482 280 ------------------------------------HWSKRLHLGTSIALVEFCPTQ-R---VVLTASKEWGAMITKL 317 (340)
Q Consensus 280 ------------------------------------~~~~~~~~~~~i~~~~~~~~~-~---~l~~~~~dg~i~iw~~ 317 (340)
..+...| ...|+++++.+.. . .|+|+|.||.|+||++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H-~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 301 HTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVH-QNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SSSSBCCCCCC-------------------------CCCSSSC-SSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccchhhccccccccccCccc-cceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0011125 5789999976643 2 6999999999999985
No 43
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-43 Score=302.03 Aligned_cols=295 Identities=12% Similarity=0.151 Sum_probs=242.0
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCC-CCeEEEE
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCS 81 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~ 81 (340)
...+|++++|+|+ ..++++|+ .++.+++|++..... .......+.+|...|.+++|+|+ +++|+++
T Consensus 66 ~~~~v~~~~~s~~---~~~l~~~~------~dg~v~vw~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 132 (416)
T 2pm9_A 66 VDSKFNDLDWSHN---NKIIAGAL------DNGSLELYSTNEANN----AINSMARFSNHSSSVKTVKFNAKQDNVLASG 132 (416)
T ss_dssp CSSCEEEEEECSS---SSCEEEEE------SSSCEEEECCSSTTS----CCCEEEECCCSSSCCCEEEECSSSTTBEEEE
T ss_pred cCCceEEEEECCC---CCeEEEEc------cCCeEEEeecccccc----cccchhhccCCccceEEEEEcCCCCCEEEEE
Confidence 4678999999994 44566555 466799999874221 12245667889999999999998 8999999
Q ss_pred ecCCCEEEEEecCce------eeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeCCCCceeeccccC-
Q 019482 82 TTNGGCKLFEVYGGA------TDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEPKA- 153 (340)
Q Consensus 82 ~~d~~i~iw~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~- 153 (340)
+.|+.|++||+.+.+ ..... .....|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+..+
T Consensus 133 ~~dg~v~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 208 (416)
T 2pm9_A 133 GNNGEIFIWDMNKCTESPSNYTPLTP----GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTS 208 (416)
T ss_dssp CSSSCEEBCBTTTTSSCTTTCCCBCC----CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCC
T ss_pred cCCCeEEEEECCCCcccccccccccc----ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccc
Confidence 999999999998775 22111 112347789999999998 789999999999999999998887777665
Q ss_pred -----ccceeEEEecCCC-CeEEEeeCCC---eEEEEEccCC-eeEEEeecCCCCceeeEEEcc-CCCcceEEEEEecCC
Q 019482 154 -----HKSVLDMDFSLDS-EFLATTSTDG---SARIWKTEDG-VAWTFLTRNSDEKIELCRFSK-DGTKPFLFCTVQRGD 222 (340)
Q Consensus 154 -----~~~i~~~~~~~~~-~~l~~~~~d~---~v~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~ 222 (340)
...+.+++|+|++ .++++++.|+ .|++||++++ +++..+...+...+.+++|+| ++.. +++++.
T Consensus 209 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-----l~s~~~ 283 (416)
T 2pm9_A 209 PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHL-----LLSSGR 283 (416)
T ss_dssp CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSC-----EEEEES
T ss_pred cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCe-----EEEEeC
Confidence 5689999999987 6899999998 9999999986 455555424567899999999 7776 788899
Q ss_pred cceEEEEECCCCcEEeeeeccCCCeeEEEECCCC-CEEEEeeCCCcEEEEeccCceEeecccc-----------------
Q 019482 223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKR----------------- 284 (340)
Q Consensus 223 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------------- 284 (340)
|+.|++||+++++.+..+..|...+.+++|+|++ .+|++++.|+.|++||+.+.........
T Consensus 284 dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (416)
T 2pm9_A 284 DNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVS 363 (416)
T ss_dssp SSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------------------
T ss_pred CCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccc
Confidence 9999999999999999999999999999999998 8999999999999999987654322100
Q ss_pred -----------------cccccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482 285 -----------------LHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 285 -----------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
.+ ..++.+++|+|||++|++++.|+.|+||++..+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 364 REESKEKPSVFHLQAPTWY-GEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ---CCSCCCSSCCCCCSTT-CCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccccccccccCCccc-cCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 02 457889999999999999999999999998643
No 44
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.2e-41 Score=282.59 Aligned_cols=259 Identities=12% Similarity=0.175 Sum_probs=216.1
Q ss_pred CeeeEEEecCCCCeeEEEEcCCC-CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc
Q 019482 53 PLVTYVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131 (340)
Q Consensus 53 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 131 (340)
..+..++.+|.+.|++++|+|++ ++|++++.|++|++|++........... .....|...|.+++|+|++++|++++
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~--~~~~~h~~~v~~~~~s~dg~~l~s~s 84 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV--RSFKGHSHIVQDCTLTADGAYALSAS 84 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEE--EEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccc--eEEeCCcccEEEEEECCCCCEEEEEe
Confidence 34556789999999999999965 7999999999999999965321110000 00113788999999999999999999
Q ss_pred CCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCc
Q 019482 132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (340)
Q Consensus 132 ~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (340)
.|++|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||++ ++++..+.. +...+.+++|+|....
T Consensus 85 ~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~-h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLG-HNDWVSQVRVVPNEKA 162 (319)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECC-CSSCEEEEEECCC---
T ss_pred CCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEec-cCCcEEEEEEccCCCC
Confidence 99999999999999998898999999999999999999999999999999996 456666654 5568999999996431
Q ss_pred ce-EEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccc
Q 019482 212 PF-LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS 290 (340)
Q Consensus 212 ~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 290 (340)
.. -..+++++.|+.|++||+++.+....+..|...|.+++|+|++++|++++.||.|++||+.+++.+..+.. ...
T Consensus 163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~ 239 (319)
T 3frx_A 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA---QDE 239 (319)
T ss_dssp ---CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC---CSC
T ss_pred CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC---CCc
Confidence 00 00178899999999999999998888999999999999999999999999999999999999988876642 358
Q ss_pred eeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482 291 IALVEFCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 291 i~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
|.+++|+|++.+|++++.+ .+++|+++.
T Consensus 240 v~~~~~sp~~~~la~~~~~-~i~v~~~~~ 267 (319)
T 3frx_A 240 VFSLAFSPNRYWLAAATAT-GIKVFSLDP 267 (319)
T ss_dssp EEEEEECSSSSEEEEEETT-EEEEEEETT
T ss_pred EEEEEEcCCCCEEEEEcCC-CcEEEEeCc
Confidence 9999999999999888765 599999864
No 45
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.1e-43 Score=296.36 Aligned_cols=266 Identities=11% Similarity=0.138 Sum_probs=208.6
Q ss_pred ecCCCCeeEEEEcCCCCeEEEEec------CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC
Q 019482 60 DESEGDPMTIAVNPSGDDFVCSTT------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD 133 (340)
Q Consensus 60 ~~h~~~v~~~~~~~~~~~l~~~~~------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 133 (340)
.+|+..|++++|+|||++|++++. |+.+++|+..++.....+.. ....|...|.+++|+|+++ +++++.|
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~---~~~~~~~~V~~~~~s~d~~-~l~~s~d 114 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT---AGVQTEAGVTDVAWVSEKG-ILVASDS 114 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCS---EEEECSSCEEEEEEETTTE-EEEEETT
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEec---ccCCCCCCEEEEEEcCCCC-EEEEECC
Confidence 469999999999999999999997 66788888776654333221 1224778899999999985 5567789
Q ss_pred CcEEEEeCCCCceeec----cccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCC
Q 019482 134 GHLRIMHWPSLRIILD----EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209 (340)
Q Consensus 134 g~i~~~d~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (340)
|+|++||+.+++.... ..+|...|.+++|+|++++|++++.|++|++||+++++++..+.. +...|.+++|+|++
T Consensus 115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~-h~~~v~~v~~s~~~ 193 (357)
T 4g56_B 115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA-HSSEVNCVAACPGK 193 (357)
T ss_dssp SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTC
T ss_pred CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-CCCCEEEEEEccCC
Confidence 9999999988765432 335777999999999999999999999999999999999988875 45689999999998
Q ss_pred CcceEEEEEecCCcceEEEEECCCCcEEeeee--ccCCCeeEEEECCC-CCEEEEeeCCCcEEEEeccCceEeecccccc
Q 019482 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKR--LLRKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEINHWSKRLH 286 (340)
Q Consensus 210 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 286 (340)
... +++++.|+.|++||+++++++..+. .+...+.+++|+|+ +.+|++|+.|+.|++||+++++.+..+ ..|
T Consensus 194 ~~~----~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~-~~~ 268 (357)
T 4g56_B 194 DTI----FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS-AVH 268 (357)
T ss_dssp SSC----EEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE-CCC
T ss_pred Cce----eeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE-ecc
Confidence 643 6788899999999999988765544 45567999999997 568999999999999999998877765 355
Q ss_pred cccceeeEEEecCC-eEEEEEecCCcEEEEEecCCCCCCCCccccccccccccCC
Q 019482 287 LGTSIALVEFCPTQ-RVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSVS 340 (340)
Q Consensus 287 ~~~~i~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~vs 340 (340)
...|++++|+|++ ++|++++.|+.|+||+++... ......|...|++|+
T Consensus 269 -~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~----~~~~~~H~~~V~~va 318 (357)
T 4g56_B 269 -SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE----VFRDLSHRDFVTGVA 318 (357)
T ss_dssp -SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE----EEEECCCSSCEEEEE
T ss_pred -ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc----EeEECCCCCCEEEEE
Confidence 5799999999987 689999999999999986543 223346888887663
No 46
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=7.7e-42 Score=286.69 Aligned_cols=262 Identities=15% Similarity=0.153 Sum_probs=208.7
Q ss_pred eeeEEEecCCCCeeEEEE-----cC-CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeE
Q 019482 54 LVTYVFDESEGDPMTIAV-----NP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF 127 (340)
Q Consensus 54 ~~~~~~~~h~~~v~~~~~-----~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 127 (340)
.....+++|.+.|++++| ++ ++++|++|+.|++|++||+...+..............|...|.+++|+|++.++
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 345678999999999999 76 899999999999999999976432110000000112478899999999999999
Q ss_pred EEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee--cCCCCceeeEEE
Q 019482 128 AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKIELCRF 205 (340)
Q Consensus 128 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~ 205 (340)
++++.|++|++||+++++....+.+|...|.+++|+|++++|++++.|++|++||+... ...... ..+...+.+++|
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeee
Confidence 99999999999999999998888889999999999999999999999999999999743 333332 245567999999
Q ss_pred ccCCCcce-----EEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCc-eEe
Q 019482 206 SKDGTKPF-----LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM-EIN 279 (340)
Q Consensus 206 ~~~~~~~~-----~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~ 279 (340)
+|++.... -..+++++.|+.|++||. ..+....+..|...|.+++|+|+|++|++|+.||.|++||+... ...
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~ 249 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ 249 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCS
T ss_pred ccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence 99873100 001688899999999994 45666778899999999999999999999999999999999543 333
Q ss_pred ecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 280 HWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 280 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
..+. + ...|.+++|+|+++++++ +.|+.+++|++....
T Consensus 250 ~~~~--~-~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 250 REFD--A-GSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQS 287 (343)
T ss_dssp EEEE--C-SSCEEEEEECSSSCEEEE-EESSCEEEEESSSCC
T ss_pred eeec--C-CCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCC
Confidence 3221 2 357999999999987765 468889999987544
No 47
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-42 Score=285.84 Aligned_cols=252 Identities=12% Similarity=0.059 Sum_probs=204.7
Q ss_pred CeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCcee--eeeeccccCCCCCCCCCeEEEEEecCCCeEEEc
Q 019482 53 PLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT--DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG 130 (340)
Q Consensus 53 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 130 (340)
......+++|.+.|.+++|+|+ +|++++.|+.|++||+..+.. ...+. ...|...|.+++|+|++++|+++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~-----~~~h~~~v~~v~~sp~~~~las~ 76 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLD-----ETAHKKAIRSVAWRPHTSLLAAG 76 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEEC-----TTCCCSCEEEEEECTTSSEEEEE
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEe-----cCCccCCEEEEEECCCCCEEEEE
Confidence 3455678999999999999987 999999999999999986532 11111 11278899999999999999999
Q ss_pred cCCCcEEEEeCCC-------CceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCC----eeEEEeecCCCCc
Q 019482 131 GVDGHLRIMHWPS-------LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG----VAWTFLTRNSDEK 199 (340)
Q Consensus 131 ~~dg~i~~~d~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~----~~~~~~~~~~~~~ 199 (340)
+.|++|++||++. .+....+.+|...|.+++|+|++++|++++.|++|++||++.. +++..+. .|...
T Consensus 77 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~-~h~~~ 155 (330)
T 2hes_X 77 SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ-EHSQD 155 (330)
T ss_dssp ETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC-CCSSC
T ss_pred eCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec-cCCCc
Confidence 9999999999853 2345556778889999999999999999999999999999532 4455555 45568
Q ss_pred eeeEEEccCCCcceEEEEEecCCcceEEEEECCCC--cEEeeeeccCCCeeEEEECCC--CCEEEEeeCCCcEEEEeccC
Q 019482 200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW--NKIGHKRLLRKPASVLSISLD--GKYLAMGSKDGDICVVDVKK 275 (340)
Q Consensus 200 v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~ 275 (340)
|.+++|+|++.. +++++.|+.|++||.+++ +++..+..|...|.+++|+|+ +.+|++++.|+.|++||+.+
T Consensus 156 v~~v~~~p~~~~-----l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 156 VKHVIWHPSEAL-----LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp EEEEEECSSSSE-----EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred eEEEEECCCCCE-----EEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence 999999999987 789999999999999876 567788899999999999998 77999999999999999976
Q ss_pred c--------eEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482 276 M--------EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 276 ~--------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
+ .....+...| ...|.+++|++++ +|++++.||.|+||+...
T Consensus 231 ~~~~~~~~~~~~~~~~~~h-~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~ 280 (330)
T 2hes_X 231 DDEDDQQEWVCEAILPDVH-KRQVYNVAWGFNG-LIASVGADGVLAVYEEVD 280 (330)
T ss_dssp ECTTSCEEEEEEEECCSCC-SSCEEEEEECTTS-CEEEEETTSCEEEEEEET
T ss_pred CCccccceeEEeeeccccc-ccceEEEEEcCCC-EEEEEeCCCEEEEEEcCC
Confidence 5 3333333235 6799999999765 799999999999999864
No 48
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.6e-42 Score=292.71 Aligned_cols=266 Identities=17% Similarity=0.198 Sum_probs=219.6
Q ss_pred cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCC-----------CCCCCCCeEEEEEecCCCeEEE
Q 019482 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMP-----------PLQDAGPQKCLSFSVDGSRFAA 129 (340)
Q Consensus 61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~l~~ 129 (340)
+|.+.|.+++|+|+|++||+++ ++.+++|++.+++....+...... ...+...|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999977 578999999888765544321100 0012335999999999999999
Q ss_pred ccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEcc-C
Q 019482 130 GGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK-D 208 (340)
Q Consensus 130 ~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~ 208 (340)
|+.|+.|++||+++++....+.+|...|.+++|+|++++|++++.|++|++||++++++...+. +...+.+++|+| +
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS--IEDGVTTVAVSPGD 218 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSTT
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE--cCCCcEEEEEECCC
Confidence 9999999999999999888888898999999999999999999999999999999999887775 335699999999 7
Q ss_pred CCcceEEEEEecCCcceEEEEECCCCcEEeee-------eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE---
Q 019482 209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHK-------RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI--- 278 (340)
Q Consensus 209 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~--- 278 (340)
+.. +++++.|+.|++||+++++.+..+ ..|...|.+++|+|++++|++++.|+.|++||+++...
T Consensus 219 ~~~-----l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~ 293 (393)
T 1erj_A 219 GKY-----IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 293 (393)
T ss_dssp CCE-----EEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------
T ss_pred CCE-----EEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccc
Confidence 776 788999999999999998877665 46788999999999999999999999999999976432
Q ss_pred ---------eecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482 279 ---------NHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV 339 (340)
Q Consensus 279 ---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v 339 (340)
...+ .+| ...|.+++|+|++++|++++.|+.|++|++.... .+.....|.+.|.++
T Consensus 294 ~~~~~~~~~~~~~-~~h-~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~---~~~~l~~h~~~v~~v 358 (393)
T 1erj_A 294 SKTPNSGTCEVTY-IGH-KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN---PLLMLQGHRNSVISV 358 (393)
T ss_dssp -------CEEEEE-ECC-SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEE
T ss_pred ccCCCCCcceEEE-ecc-cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCe---EEEEECCCCCCEEEE
Confidence 1222 345 5689999999999999999999999999986544 345566787777654
No 49
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6e-42 Score=286.47 Aligned_cols=288 Identities=13% Similarity=0.133 Sum_probs=235.0
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
..+|.+++|+| ++.+++.+.... .+..|... .........+|...|.+++|+|++++|++++
T Consensus 9 ~~~v~~~~~s~---dg~~~~~~~~~~------~~~~~~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~- 70 (337)
T 1gxr_A 9 SKPAYSFHVTA---DGQMQPVPFPPD------ALIGPGIP--------RHARQINTLNHGEVVCAVTISNPTRHVYTGG- 70 (337)
T ss_dssp EEECCEEEECS---SSCEEECCCCTT------SSSSTTCC--------SEEEEEEEECCSSCCCEEEECSSSSEEEEEC-
T ss_pred CCceeEEEECC---CCCEEEeecCCC------cEeccccC--------CccccceeccCCCceEEEEEecCCcEEEEcC-
Confidence 56899999999 556676555322 23222111 2223334457999999999999999999999
Q ss_pred CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc--eeeccccCccceeEEE
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR--IILDEPKAHKSVLDMD 161 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~i~~~~ 161 (340)
|+.|++||+.+.......... ....|...|.+++|+|++++|++++.|+.|++||+++++ ....+..+...+.+++
T Consensus 71 dg~i~iw~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~ 148 (337)
T 1gxr_A 71 KGCVKVWDISHPGNKSPVSQL--DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148 (337)
T ss_dssp BSEEEEEETTSTTCCSCSEEE--ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEE
T ss_pred CCeEEEEECCCCCceeeeecc--cccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEE
Confidence 999999999876533222211 111377899999999999999999999999999999877 4555667777899999
Q ss_pred ecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee
Q 019482 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (340)
Q Consensus 162 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 241 (340)
|+|+++++++++.|+.|++||+++++.+..+.. +...+.+++|+|+++. +++++.|+.|++||+++++.+..+.
T Consensus 149 ~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~-----l~~~~~dg~i~~~d~~~~~~~~~~~ 222 (337)
T 1gxr_A 149 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCIDISNDGTK-----LWTGGLDNTVRSWDLREGRQLQQHD 222 (337)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSE-----EEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCceeeeeec-ccCceEEEEECCCCCE-----EEEEecCCcEEEEECCCCceEeeec
Confidence 999999999999999999999999998888865 4568999999999987 7888899999999999998876654
Q ss_pred ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 242 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
+...+.+++|+|+++++++++.|+.|++||+++++.... ..| ..+|.+++|+|++++|++++.||.+++|++....
T Consensus 223 -~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~--~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 223 -FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL--HLH-ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp -CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE--CCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred -CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEE--cCC-ccceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence 667899999999999999999999999999998876543 345 5789999999999999999999999999987544
No 50
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.1e-42 Score=290.57 Aligned_cols=291 Identities=9% Similarity=0.093 Sum_probs=230.0
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCC---CCeEE
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS---GDDFV 79 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~ 79 (340)
+..+|++++|+|+.. .++++|+. ...++.|++|+++... .......+|...|.+++|+|+ +++|+
T Consensus 17 h~~~v~~~~~~p~~~--~l~~~~s~---~~~d~~v~iw~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~l~ 84 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSA--KFVTMGNF---ARGTGVIQLYEIQHGD-------LKLLREIEKAKPIKCGTFGATSLQQRYLA 84 (357)
T ss_dssp CSSCEEEEEECTTSS--EEEEEEC-----CCCEEEEEEEECSSS-------EEEEEEEEESSCEEEEECTTCCTTTCCEE
T ss_pred CCCceEEEEEcCCCc--eEEEecCc---cCCCcEEEEEeCCCCc-------ccceeeecccCcEEEEEEcCCCCCCceEE
Confidence 467899999999643 56665542 1136789999997321 111223378999999999998 69999
Q ss_pred EEecCCCEEEEEecCce-eeeeeccccCCCCCCCCCeEEEEE------ecCCCeEEEccCCCcEEEEeCCCCc-eeeccc
Q 019482 80 CSTTNGGCKLFEVYGGA-TDINLLAKKMPPLQDAGPQKCLSF------SVDGSRFAAGGVDGHLRIMHWPSLR-IILDEP 151 (340)
Q Consensus 80 ~~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~ 151 (340)
+++.|+.|++||+.+.+ ....+. .|...|.++.| +|++++|++++.||.|++||+++++ ....+.
T Consensus 85 ~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 157 (357)
T 3i2n_A 85 TGDFGGNLHIWNLEAPEMPVYSVK-------GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANME 157 (357)
T ss_dssp EEETTSCEEEECTTSCSSCSEEEC-------CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEEC
T ss_pred EecCCCeEEEEeCCCCCccEEEEE-------ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecc
Confidence 99999999999998876 333332 37789999954 6889999999999999999999876 455554
Q ss_pred cCcc----ceeEEE----ecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEcc---CCCcceEEEEEec
Q 019482 152 KAHK----SVLDMD----FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK---DGTKPFLFCTVQR 220 (340)
Q Consensus 152 ~~~~----~i~~~~----~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~ 220 (340)
.+.. .+.+++ |+|+++++++++.|+.|++||+++++..... .+...+.+++|+| ++.. ++++
T Consensus 158 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~-----l~~~ 230 (357)
T 3i2n_A 158 PVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET--NIKNGVCSLEFDRKDISMNK-----LVAT 230 (357)
T ss_dssp CCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEESCSSSSCCE-----EEEE
T ss_pred ccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec--CCCCceEEEEcCCCCCCCCE-----EEEE
Confidence 4333 788888 7889999999999999999999998875554 3456899999999 7886 7888
Q ss_pred CCcceEEEEECCCCcEEeeee-----ccCCCeeEEEECCCCC-EEEEeeCCCcEEEEeccCce-----------------
Q 019482 221 GDKALLAVYDISTWNKIGHKR-----LLRKPASVLSISLDGK-YLAMGSKDGDICVVDVKKME----------------- 277 (340)
Q Consensus 221 ~~d~~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~----------------- 277 (340)
+.|+.|++||+++++.+..+. .|...|.+++|+|+++ +|++++.||.|++||++.+.
T Consensus 231 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~ 310 (357)
T 3i2n_A 231 SLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGS 310 (357)
T ss_dssp ESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCE
T ss_pred CCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccc
Confidence 999999999998876554444 8889999999999998 89999999999999998643
Q ss_pred --EeecccccccccceeeEEEecCCeEEE-EEecCCcEEEEEecCCC
Q 019482 278 --INHWSKRLHLGTSIALVEFCPTQRVVL-TASKEWGAMITKLTVPA 321 (340)
Q Consensus 278 --~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~ 321 (340)
.+..+ ..| ..+|++++|+|++++|+ +++.||.|++|++....
T Consensus 311 ~~~~~~~-~~~-~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 311 VSLLQNV-TLS-TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EEEEEEE-ECC-SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred cceeecc-ccC-CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 23222 345 57999999999999888 89999999999997543
No 51
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.7e-41 Score=287.41 Aligned_cols=281 Identities=13% Similarity=0.156 Sum_probs=230.8
Q ss_pred eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEec-CCCCeeEEEEcCCCCeEEEEecCC
Q 019482 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE-SEGDPMTIAVNPSGDDFVCSTTNG 85 (340)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~d~ 85 (340)
+.+++|++. .+++ ++.++.|.+|+.+ .......+.. |...|.+++|+|++++|++++.||
T Consensus 96 ~~~~~~s~~----~l~~-------~~~d~~v~lw~~~--------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 156 (401)
T 4aez_A 96 LNLLDWSNL----NVVA-------VALERNVYVWNAD--------SGSVSALAETDESTYVASVKWSHDGSFLSVGLGNG 156 (401)
T ss_dssp CBCEEECTT----SEEE-------EEETTEEEEEETT--------TCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEeecCC----CEEE-------EECCCeEEEeeCC--------CCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCC
Confidence 445677651 3555 3467779999987 2333333443 889999999999999999999999
Q ss_pred CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC-CCceeeccccCccceeEEEecC
Q 019482 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP-SLRIILDEPKAHKSVLDMDFSL 164 (340)
Q Consensus 86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~~~~~~~~~~i~~~~~~~ 164 (340)
.|++||+.+++....+. .|...|.+++| ++++|++++.||.|++||++ .......+..|...|.+++|+|
T Consensus 157 ~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 227 (401)
T 4aez_A 157 LVDIYDVESQTKLRTMA-------GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS 227 (401)
T ss_dssp CEEEEETTTCCEEEEEC-------CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred eEEEEECcCCeEEEEec-------CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC
Confidence 99999999887665553 37789999999 45799999999999999998 4556667778888999999999
Q ss_pred CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEec--CCcceEEEEECCCCcEEeeeec
Q 019482 165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR--GDKALLAVYDISTWNKIGHKRL 242 (340)
Q Consensus 165 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~d~~i~i~d~~~~~~~~~~~~ 242 (340)
++++|++++.|+.|++||+++++.+..+.. +...+.+++|+|++..+ ++++ +.|+.|++||+++++.+..+.
T Consensus 228 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~p~~~~l----l~~~~gs~d~~i~i~d~~~~~~~~~~~- 301 (401)
T 4aez_A 228 DGLQLASGGNDNVVQIWDARSSIPKFTKTN-HNAAVKAVAWCPWQSNL----LATGGGTMDKQIHFWNAATGARVNTVD- 301 (401)
T ss_dssp TSSEEEEEETTSCEEEEETTCSSEEEEECC-CSSCCCEEEECTTSTTE----EEEECCTTTCEEEEEETTTCCEEEEEE-
T ss_pred CCCEEEEEeCCCeEEEccCCCCCccEEecC-CcceEEEEEECCCCCCE----EEEecCCCCCEEEEEECCCCCEEEEEe-
Confidence 999999999999999999999988888764 45689999999998763 3443 379999999999999887775
Q ss_pred cCCCeeEEEECCCCCEEEE--eeCCCcEEEEeccCceEeeccc-ccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482 243 LRKPASVLSISLDGKYLAM--GSKDGDICVVDVKKMEINHWSK-RLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 243 ~~~~i~~~~~s~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
+...+.+++|+|+++++++ |+.||.|++||+.+++...... ..| ...|.+++|+|++++|++++.||.|++|++..
T Consensus 302 ~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 302 AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH-DTRVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECC-SSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCC-CCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 5668999999999999999 5589999999999876555432 345 67999999999999999999999999999976
Q ss_pred CCC
Q 019482 320 PAD 322 (340)
Q Consensus 320 ~~~ 322 (340)
...
T Consensus 381 ~~~ 383 (401)
T 4aez_A 381 GDH 383 (401)
T ss_dssp ---
T ss_pred Ccc
Confidence 653
No 52
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.5e-41 Score=284.09 Aligned_cols=249 Identities=14% Similarity=0.101 Sum_probs=202.6
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
..+|++++|+|+ ..+++ | +.++.|++|+++.... .......+.+|.+.|++++|+|+|++|++|+.
T Consensus 82 ~~~v~~~~~s~d---~~l~~-~------s~dg~v~lWd~~~~~~----~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~ 147 (344)
T 4gqb_B 82 EAGVADLTWVGE---RGILV-A------SDSGAVELWELDENET----LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK 147 (344)
T ss_dssp SSCEEEEEEETT---TEEEE-E------ETTSEEEEEEECTTSS----CEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCEEEEEEeCC---CeEEE-E------ECCCEEEEEeccCCCc----eeEeeccccCCCCCEEEEEECCCCCEEEEEeC
Confidence 356999999994 34554 4 4677799999974322 12334556799999999999999999999999
Q ss_pred CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCC-eEEEccCCCcEEEEeCCCCceeecccc--CccceeEE
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPSLRIILDEPK--AHKSVLDM 160 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~i~~~ 160 (340)
|+.|++||+.+++....+.. |...|.+++|+|++. +|++++.|++|++||+++++....+.. +...+.++
T Consensus 148 d~~i~iwd~~~~~~~~~~~~-------h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 220 (344)
T 4gqb_B 148 DICIKVWDLAQQVVLSSYRA-------HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSL 220 (344)
T ss_dssp TSCEEEEETTTTEEEEEECC-------CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEE
T ss_pred CCeEEEEECCCCcEEEEEcC-------cCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceee
Confidence 99999999999887766543 789999999999875 789999999999999999887766543 33468999
Q ss_pred EecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee
Q 019482 161 DFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (340)
Q Consensus 161 ~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~ 239 (340)
+|+| ++++|++|+.|++|++||+++++++..+.. |...|++++|+|++..+ +++++.|+.|++||+++++.. .
T Consensus 221 ~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~-h~~~v~~v~fsp~g~~~----lasgs~D~~i~vwd~~~~~~~-~ 294 (344)
T 4gqb_B 221 AWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV-HSQCVTGLVFSPHSVPF----LASLSEDCSLAVLDSSLSELF-R 294 (344)
T ss_dssp EECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC-CSSCEEEEEECSSSSCC----EEEEETTSCEEEECTTCCEEE-E
T ss_pred eecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC-CCCCEEEEEEccCCCeE----EEEEeCCCeEEEEECCCCcEE-E
Confidence 9999 566889999999999999999999998875 45689999999998542 688999999999999988764 5
Q ss_pred eeccCCCeeEEEECCCCC-EEEEeeCCCcEEEEeccCceEe
Q 019482 240 KRLLRKPASVLSISLDGK-YLAMGSKDGDICVVDVKKMEIN 279 (340)
Q Consensus 240 ~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~ 279 (340)
+..|...|++++|+|+++ +|++++.|++|++|++.+....
T Consensus 295 ~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~ 335 (344)
T 4gqb_B 295 SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLP 335 (344)
T ss_dssp ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC----
T ss_pred EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCC
Confidence 788999999999999986 5678999999999999875543
No 53
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-41 Score=292.07 Aligned_cols=288 Identities=16% Similarity=0.209 Sum_probs=242.6
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
..+|++++|+| +..++++|+ .++.|.+|+. .......+.+|...|.+++|+|++++|++++.
T Consensus 108 ~~~v~~~~~s~---~~~~l~~~~------~dg~i~i~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 169 (425)
T 1r5m_A 108 TNQVTCLAWSH---DGNSIVTGV------ENGELRLWNK---------TGALLNVLNFHRAPIVSVKWNKDGTHIISMDV 169 (425)
T ss_dssp CBCEEEEEECT---TSSEEEEEE------TTSCEEEEET---------TSCEEEEECCCCSCEEEEEECTTSSEEEEEET
T ss_pred CCceEEEEEcC---CCCEEEEEe------CCCeEEEEeC---------CCCeeeeccCCCccEEEEEECCCCCEEEEEec
Confidence 45899999999 445677665 4566999982 23345668889999999999999999999999
Q ss_pred CCCEEEEEecCceeeeeeccccCC--------CCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCcc
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMP--------PLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK 155 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 155 (340)
|+.|++||+.+++....+...... .......+.++.|+|++ .+++++.+|.|++||+++++....+..|..
T Consensus 170 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~ 248 (425)
T 1r5m_A 170 ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHG 248 (425)
T ss_dssp TCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSS
T ss_pred CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCC
Confidence 999999999988766555332110 00011128899999986 588888999999999999988888888888
Q ss_pred ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc
Q 019482 156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (340)
Q Consensus 156 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~ 235 (340)
.|.+++|+|++++|++++.|+.|++||+++++.+..+.. +...+.+++|+|++ . +++++.|+.|++||+++++
T Consensus 249 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~-~-----l~~~~~d~~i~i~d~~~~~ 321 (425)
T 1r5m_A 249 PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYG-HSQSIVSASWVGDD-K-----VISCSMDGSVRLWSLKQNT 321 (425)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECC-CSSCEEEEEEETTT-E-----EEEEETTSEEEEEETTTTE
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecC-CCccEEEEEECCCC-E-----EEEEeCCCcEEEEECCCCc
Confidence 999999999999999999999999999999888888764 45689999999999 4 7888999999999999999
Q ss_pred EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce--------------------Eeeccccccccc-ceeeE
Q 019482 236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME--------------------INHWSKRLHLGT-SIALV 294 (340)
Q Consensus 236 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--------------------~~~~~~~~~~~~-~i~~~ 294 (340)
.+..+..+...+.+++|+|++++|++++.||.|++||+++++ .+..+. .|... .|.++
T Consensus 322 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~ 400 (425)
T 1r5m_A 322 LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ-SSQDNDYIFDL 400 (425)
T ss_dssp EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEEC-CTTCCCCEEEE
T ss_pred EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhc-CcccCCceEEE
Confidence 999999999999999999999999999999999999999887 555553 44223 89999
Q ss_pred EEecCCeEEEEEecCCcEEEEEec
Q 019482 295 EFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 295 ~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
+|+|++++|++++.||.|++|+++
T Consensus 401 ~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 401 SWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EECTTSSEEEEEESSSCCEEEECC
T ss_pred EccCCCceEEEEecCceEEEEeec
Confidence 999999999999999999999985
No 54
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-40 Score=275.24 Aligned_cols=281 Identities=12% Similarity=0.116 Sum_probs=237.7
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
+..+|+|++| ++ ..++++|+ .++.|++|+++ .......+..|...|.+++|+|++++|++++
T Consensus 17 h~~~v~~~~~-~~---~~~l~s~~------~dg~v~vw~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 78 (313)
T 3odt_A 17 HDQDVRDVVA-VD---DSKVASVS------RDGTVRLWSKD--------DQWLGTVVYTGQGFLNSVCYDSEKELLLFGG 78 (313)
T ss_dssp CSSCEEEEEE-EE---TTEEEEEE------TTSEEEEEEES--------SSEEEEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred CCCCcEEEEe-cC---CCEEEEEE------cCCcEEEEECC--------CCEEEEEeecCCccEEEEEECCCCCEEEEec
Confidence 4678999999 73 34566555 56779999996 4555677888999999999999999999999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 162 (340)
.|+.+++|++........... ...|...|.++.| +++++++++.||.|++|| .++....+..|...+.++.|
T Consensus 79 ~dg~i~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~ 150 (313)
T 3odt_A 79 KDTMINGVPLFATSGEDPLYT----LIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKV 150 (313)
T ss_dssp TTSCEEEEETTCCTTSCC-CE----ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEE
T ss_pred CCCeEEEEEeeecCCCCcccc----hhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEE
Confidence 999999999976532211111 1137789999999 577999999999999999 56667777788889999999
Q ss_pred cC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee
Q 019482 163 SL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (340)
Q Consensus 163 ~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 241 (340)
.| +++++++++.|+.|++|| .++....+...+...+.+++|+|++. +++++.|+.|++||+++++.+..+.
T Consensus 151 ~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~dg~i~i~d~~~~~~~~~~~ 222 (313)
T 3odt_A 151 VSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH------FISCSNDGLIKLVDMHTGDVLRTYE 222 (313)
T ss_dssp EETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE------EEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe------EEEccCCCeEEEEECCchhhhhhhh
Confidence 98 899999999999999999 45666677665778899999999998 5788899999999999999999999
Q ss_pred ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 242 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
.|...+.+++|+|++ .|++++.||.|++||+++++....+. .| ..+|.+++|+|+++ +++++.||.|++|+++...
T Consensus 223 ~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~-~~-~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 223 GHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT-LP-AISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp CCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE-CS-SSCEEEEEECTTSC-EEEEETTSCEEEEESCGGG
T ss_pred cCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe-cc-CceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCc
Confidence 999999999999999 68899999999999999998887764 45 56899999999998 6679999999999997654
No 55
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-41 Score=293.78 Aligned_cols=289 Identities=13% Similarity=0.116 Sum_probs=236.4
Q ss_pred CceeEEeeeeecCCCcc-EEEEcCCCCcccCCCceEEEEe----CCCCCCcccCCeeeEEEe----------cCCCCeeE
Q 019482 4 GGTVTCGSWIKRPENVN-LVVLGKSSRASSSPSVLEIFSF----DPKTTSVYTSPLVTYVFD----------ESEGDPMT 68 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~-~~~~g~~~~~~~~~~~i~i~~~----~~~~~~~~~~~~~~~~~~----------~h~~~v~~ 68 (340)
..+|+|++|+|+ +. ++++|+ .++.+.+|++ ....... .......+. +|.+.|.+
T Consensus 45 ~~~v~~~~~s~~---~~~~l~~~~------~dg~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (425)
T 1r5m_A 45 LDNIVSSTWNPL---DESILAYGE------KNSVARLARIVETDQEGKKYW--KLTIIAELRHPFALSASSGKTTNQVTC 113 (425)
T ss_dssp CSCCSEEEECSS---CTTEEEEEE------TBTEEEEEEEEEC------CE--EEEEEEEEECCCCCC------CBCEEE
T ss_pred cCceEEEEECCC---CCcEEEEec------CCceEEEEEEecccCCccccc--cccccccccccccccccccCCCCceEE
Confidence 368999999994 44 777666 5667999999 5322100 000112222 26889999
Q ss_pred EEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceee
Q 019482 69 IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL 148 (340)
Q Consensus 69 ~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 148 (340)
++|+|++++|++++.|+.|++|| .+++....+. .|...|.+++|+|++++|++++.|+.|++||+.+++...
T Consensus 114 ~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 114 LAWSHDGNSIVTGVENGELRLWN-KTGALLNVLN-------FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEE-TTSCEEEEEC-------CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeecc-------CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence 99999999999999999999999 4444444332 377899999999999999999999999999999988887
Q ss_pred ccccCccc---------------eeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcce
Q 019482 149 DEPKAHKS---------------VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213 (340)
Q Consensus 149 ~~~~~~~~---------------i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (340)
.+..+... +.++.|+|++ .+++++.|+.|++||+++++.+..+.. +...+.+++|+|+++.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~-- 261 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIG-HHGPISVLEFNDTNKL-- 261 (425)
T ss_dssp EECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECC-CSSCEEEEEEETTTTE--
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeecc-CCCceEEEEECCCCCE--
Confidence 77666555 9999999985 588888999999999999988877764 4568999999999986
Q ss_pred EEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceee
Q 019482 214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL 293 (340)
Q Consensus 214 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~ 293 (340)
+++++.|+.|++||+++++.+..+..+...+.+++|+|++ ++++++.|+.|++||+++++.+..+. .| ..+|.+
T Consensus 262 ---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~-~~-~~~i~~ 335 (425)
T 1r5m_A 262 ---LLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI-VD-GVPIFA 335 (425)
T ss_dssp ---EEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEE-CT-TCCEEE
T ss_pred ---EEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecc-cC-CccEEE
Confidence 7888899999999999999888888899999999999999 99999999999999999998877664 45 568999
Q ss_pred EEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 294 VEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 294 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
++|+|++++|++++.||.|++|++....
T Consensus 336 ~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 336 GRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 9999999999999999999999997543
No 56
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.2e-40 Score=289.35 Aligned_cols=298 Identities=13% Similarity=0.137 Sum_probs=228.3
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCC---cccCCeeeEEEecCC------------CCee
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS---VYTSPLVTYVFDESE------------GDPM 67 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~---~~~~~~~~~~~~~h~------------~~v~ 67 (340)
...+|+|++|+| ++.++|+|+ .++.|++|++...... ...+......+.+|. ..|+
T Consensus 27 ~~~~V~~v~~s~---~g~~la~g~------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~ 97 (447)
T 3dw8_B 27 EADIISTVEFNH---SGELLATGD------KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKIN 97 (447)
T ss_dssp GGGSEEEEEECS---SSSEEEEEE------TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCC
T ss_pred ccCcEEEEEECC---CCCEEEEEc------CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceE
Confidence 468999999999 456777766 5667999999744311 111233466788998 8899
Q ss_pred EEEEcCCC--CeEEEEecCCCEEEEEecCceeeeeecc---------------------------------ccCCCCCCC
Q 019482 68 TIAVNPSG--DDFVCSTTNGGCKLFEVYGGATDINLLA---------------------------------KKMPPLQDA 112 (340)
Q Consensus 68 ~~~~~~~~--~~l~~~~~d~~i~iw~~~~~~~~~~~~~---------------------------------~~~~~~~~~ 112 (340)
+++|+|++ .+|++++.|+.|++||+........... .......|.
T Consensus 98 ~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 177 (447)
T 3dw8_B 98 KIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT 177 (447)
T ss_dssp EEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS
T ss_pred EEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCC
Confidence 99999998 7999999999999999987543211000 000012488
Q ss_pred CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc-eee-------ccccCccceeEEEecCCC-CeEEEeeCCCeEEEEEc
Q 019482 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IIL-------DEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKT 183 (340)
Q Consensus 113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~-------~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~ 183 (340)
..|.+++|+|++++|++| .|+.|++||+++.. ... .+..|...|.+++|+|++ ++|++++.|+.|++||+
T Consensus 178 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 256 (447)
T 3dw8_B 178 YHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM 256 (447)
T ss_dssp SCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred cceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence 899999999999999998 79999999998443 332 355677899999999998 99999999999999999
Q ss_pred cCCee----EEEeecCCC-----------CceeeEEEccCCCcceEEEEEecCCcceEEEEECCC-CcEEeeeeccCCC-
Q 019482 184 EDGVA----WTFLTRNSD-----------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGHKRLLRKP- 246 (340)
Q Consensus 184 ~~~~~----~~~~~~~~~-----------~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~- 246 (340)
++++. +..+..+.. ..|.+++|+|++++ +++++. +.|++||+++ ++++..+..|...
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-----l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~ 330 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY-----MMTRDY-LSVKVWDLNMENRPVETYQVHEYLR 330 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE-----EEEEES-SEEEEEETTCCSSCSCCEESCGGGT
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCE-----EEEeeC-CeEEEEeCCCCccccceeecccccc
Confidence 98876 566654432 27999999999997 666777 9999999997 7777777777532
Q ss_pred --------------eeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccc----------------------------
Q 019482 247 --------------ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR---------------------------- 284 (340)
Q Consensus 247 --------------i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------------------------- 284 (340)
+..++|+|++++|++|+.||.|++||+.+++.+.....
T Consensus 331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (447)
T 3dw8_B 331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISV 410 (447)
T ss_dssp TTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEG
T ss_pred ccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccc
Confidence 23489999999999999999999999998876531100
Q ss_pred --cccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482 285 --LHLGTSIALVEFCPTQRVVLTASKEWGAMITKL 317 (340)
Q Consensus 285 --~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~ 317 (340)
......|..++|+|++++||+++.++ +++|.-
T Consensus 411 ~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 411 DSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp GGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 01134688999999999999998875 777764
No 57
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=6.1e-41 Score=281.40 Aligned_cols=266 Identities=12% Similarity=0.075 Sum_probs=217.5
Q ss_pred eEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec--CCCeEEEccCC
Q 019482 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVD 133 (340)
Q Consensus 56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d 133 (340)
...+.+|.+.|++++|+|++++|++++.||.|++||+.+.......... ...|...|.+++|+| ++++|++++.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~d~~~l~s~~~d 80 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDS---WRAHDSSIVAIDWASPEYGRIIASASYD 80 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEE---EECCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecce---eccCCCcEEEEEEcCCCCCCEEEEEcCC
Confidence 3457899999999999999999999999999999999876432222110 013778999999999 69999999999
Q ss_pred CcEEEEeCCCC---------ceeeccccCccceeEEEecCC--CCeEEEeeCCCeEEEEEccCCeeEEEee---------
Q 019482 134 GHLRIMHWPSL---------RIILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVAWTFLT--------- 193 (340)
Q Consensus 134 g~i~~~d~~~~---------~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~iwd~~~~~~~~~~~--------- 193 (340)
|.|++||++++ +....+..|...|.+++|+|+ +++|++++.|+.|++||+++++.+..+.
T Consensus 81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 160 (351)
T 3f3f_A 81 KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS 160 (351)
T ss_dssp SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence 99999999876 445666778889999999999 9999999999999999998876544332
Q ss_pred ---cCCCCceeeEEEccC---CCcceEEEEEecCCcceEEEEECCCCcE--EeeeeccCCCeeEEEECCCC----CEEEE
Q 019482 194 ---RNSDEKIELCRFSKD---GTKPFLFCTVQRGDKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDG----KYLAM 261 (340)
Q Consensus 194 ---~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~~~----~~l~~ 261 (340)
..+...+.+++|+|+ +.. +++++.++.+.+|+...++. +..+..|...|.+++|+|++ ++|++
T Consensus 161 ~~~~~~~~~~~~~~~~p~~~~~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s 235 (351)
T 3f3f_A 161 IPPANHLQSDFCLSWCPSRFSPEK-----LAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT 235 (351)
T ss_dssp CCCSSCSCCCEEEEECCCSSSCCE-----EEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE
T ss_pred cccCCcccceeEEEeccCCCCCcE-----EEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE
Confidence 134567999999997 665 78888899998888887765 56677888999999999998 89999
Q ss_pred eeCCCcEEEEeccCc----------------------------------------------eEeecccccccccceeeEE
Q 019482 262 GSKDGDICVVDVKKM----------------------------------------------EINHWSKRLHLGTSIALVE 295 (340)
Q Consensus 262 ~~~dg~i~i~d~~~~----------------------------------------------~~~~~~~~~~~~~~i~~~~ 295 (340)
++.||.|++||++.+ +.+..+ ..| ...|++++
T Consensus 236 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h-~~~v~~~~ 313 (351)
T 3f3f_A 236 GCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH-DDH-NGEVWSVS 313 (351)
T ss_dssp EETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE-CTT-SSCEEEEE
T ss_pred EcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE-ecc-cccEEEEE
Confidence 999999999999874 233322 345 57899999
Q ss_pred EecCCeEEEEEecCCcEEEEEecCCCCCCCCccccc
Q 019482 296 FCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLL 331 (340)
Q Consensus 296 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 331 (340)
|+|++++|++++.||.|++|++.....++.+.....
T Consensus 314 ~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~ 349 (351)
T 3f3f_A 314 WNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITA 349 (351)
T ss_dssp ECSSSCCEEEEETTSCEEEEEECTTSCEEEEEEEC-
T ss_pred EcCCCCEEEEecCCCcEEEEecCcCcchhheeehcc
Confidence 999999999999999999999988776555444433
No 58
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-41 Score=292.67 Aligned_cols=294 Identities=13% Similarity=0.126 Sum_probs=230.8
Q ss_pred CceeEEeeeee-cCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 4 GGTVTCGSWIK-RPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 4 ~~~v~~~~w~~-~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
..+|+|++|+| +. .++++|+ .|+.|++|++....... .......+ +|...|.+++|+|++++|++++
T Consensus 63 ~~~V~~~~~s~~~~---~~l~s~s------~dg~v~vwd~~~~~~~~--~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s 130 (437)
T 3gre_A 63 PNSITSSAVSPGET---PYLITGS------DQGVIKIWNLKEIIVGE--VYSSSLTY-DCSSTVTQITMIPNFDAFAVSS 130 (437)
T ss_dssp TSCEEEEEEECSSS---CEEEEEE------TTSEEEEEEHHHHHTTC--CCSCSEEE-ECSSCEEEEEECTTSSEEEEEE
T ss_pred CCceEEEEECCCCC---CEEEEec------CCceEEEeECcccccCc--ccceeeec-cCCCCEEEEEEeCCCCEEEEEe
Confidence 48999999999 53 4667665 56679999986411111 01112222 4999999999999999999999
Q ss_pred cCCCEEEEEec---CceeeeeeccccC-----CCCCCCCCeEEEE--EecCCCeEEEccCCCcEEEEeCCCCceeecccc
Q 019482 83 TNGGCKLFEVY---GGATDINLLAKKM-----PPLQDAGPQKCLS--FSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK 152 (340)
Q Consensus 83 ~d~~i~iw~~~---~~~~~~~~~~~~~-----~~~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 152 (340)
.|+.|++||+. .++.......... .+..+...+.++. +++++++|++++.|+.|++||+++++.+..+..
T Consensus 131 ~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 210 (437)
T 3gre_A 131 KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN 210 (437)
T ss_dssp TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence 99999999995 3322221111100 0001456778887 567899999999999999999999998888877
Q ss_pred --CccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEcc----CCCcceEEEEEecCCcceE
Q 019482 153 --AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK----DGTKPFLFCTVQRGDKALL 226 (340)
Q Consensus 153 --~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~d~~i 226 (340)
|...|.+++|+|++++|++|+.|+.|++||+++++++..+...+...|.+++|+| ++.. +++++.|+.|
T Consensus 211 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~-----l~s~~~dg~i 285 (437)
T 3gre_A 211 SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVI-----VVGGSSKTFL 285 (437)
T ss_dssp CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEE-----EEEESTTEEE
T ss_pred CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccE-----EEEEcCCCcE
Confidence 6789999999999999999999999999999999998888645556899996665 4544 7899999999
Q ss_pred EEEECCCCcEEeeeecc--------------------------CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEee
Q 019482 227 AVYDISTWNKIGHKRLL--------------------------RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH 280 (340)
Q Consensus 227 ~i~d~~~~~~~~~~~~~--------------------------~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 280 (340)
++||+++++.+..+..+ ...|.+++|+ ++++|++++.|+.|++||+.+++...
T Consensus 286 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~ 364 (437)
T 3gre_A 286 TIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK 364 (437)
T ss_dssp EEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred EEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence 99999999877766643 3457888888 77899999999999999999877655
Q ss_pred cccc------------------------------------cccccceeeEEEecC--CeEEEEEecCCcEEEEE
Q 019482 281 WSKR------------------------------------LHLGTSIALVEFCPT--QRVVLTASKEWGAMITK 316 (340)
Q Consensus 281 ~~~~------------------------------------~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iw~ 316 (340)
.+.. .| ...|++++|+++ +.+|++|+.||.|+||+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 365 AVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYH-HDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEECC--CCCEEEEEEEETTEEEEEEECC--------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EEecccccCceEEEEEeecceEEEEEecccccccccCccccc-ccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 4432 14 678999999998 88999999999999995
No 59
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=8.6e-41 Score=288.10 Aligned_cols=284 Identities=12% Similarity=0.137 Sum_probs=230.3
Q ss_pred eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCC
Q 019482 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG 85 (340)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~ 85 (340)
.+.+..|++ +..++++|+ .++.|++|++. .......+.+|...|++++|+|++++|++++.|+
T Consensus 99 ~~~~~~~~~---~~~~l~~~~------~dg~i~iwd~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~ 161 (420)
T 3vl1_A 99 YTAVDTAKL---QMRRFILGT------TEGDIKVLDSN--------FNLQREIDQAHVSEITKLKFFPSGEALISSSQDM 161 (420)
T ss_dssp EEEEEEECS---SSCEEEEEE------TTSCEEEECTT--------SCEEEEETTSSSSCEEEEEECTTSSEEEEEETTS
T ss_pred ceEEEEEec---CCCEEEEEE------CCCCEEEEeCC--------CcceeeecccccCccEEEEECCCCCEEEEEeCCC
Confidence 344446666 345677665 56669999876 4445556679999999999999999999999999
Q ss_pred CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccC------------
Q 019482 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA------------ 153 (340)
Q Consensus 86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~------------ 153 (340)
.|++||+.+++....+. .|...|.+++|+|++++|++++.|+.|++||+++++.+..+..+
T Consensus 162 ~i~iwd~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 234 (420)
T 3vl1_A 162 QLKIWSVKDGSNPRTLI-------GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL 234 (420)
T ss_dssp EEEEEETTTCCCCEEEE-------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEE
T ss_pred eEEEEeCCCCcCceEEc-------CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEE
Confidence 99999999887665553 27789999999999999999999999999999998877766542
Q ss_pred ------------ccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCC-cceEEEEEec
Q 019482 154 ------------HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT-KPFLFCTVQR 220 (340)
Q Consensus 154 ------------~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~ 220 (340)
...+.+++|+|++++|++++.||.|++||+++++.+..+...+...+.+++|+|++. . ++++
T Consensus 235 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----l~~g 309 (420)
T 3vl1_A 235 FVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANY-----IYAG 309 (420)
T ss_dssp EECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTE-----EEEE
T ss_pred ecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCE-----EEEE
Confidence 234556677899999999999999999999999988888777778899999999998 5 7889
Q ss_pred CCcceEEEEECCCCcE-Eeeeec-cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEee--------cccccccccc
Q 019482 221 GDKALLAVYDISTWNK-IGHKRL-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH--------WSKRLHLGTS 290 (340)
Q Consensus 221 ~~d~~i~i~d~~~~~~-~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~--------~~~~~~~~~~ 290 (340)
+.|+.|++||+++++. +..+.. +...+.++.+ |++++|++++.|+.|++||+...+... .....+ ...
T Consensus 310 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~ 387 (420)
T 3vl1_A 310 YENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSN-DDA 387 (420)
T ss_dssp ETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCS-SCC
T ss_pred eCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccC-Ccc
Confidence 9999999999998754 556665 5677888755 678899999999999999987732211 011233 468
Q ss_pred eeeEEEecCCe---EEEEEecCCcEEEEEecCC
Q 019482 291 IALVEFCPTQR---VVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 291 i~~~~~~~~~~---~l~~~~~dg~i~iw~~~~~ 320 (340)
|.+++|+|+++ .+++++.+|.+.+|++..|
T Consensus 388 v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~~ 420 (420)
T 3vl1_A 388 VSQFCYVSDDESNGEVLEVGKNNFCALYNLSNP 420 (420)
T ss_dssp CCEEEEECCSSSSCEEEEEETTTEEEEEESCC-
T ss_pred eEEEEEccCCCCcceEEEEcCCceEEEEeccCC
Confidence 99999999999 7888888999999998653
No 60
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9.2e-40 Score=281.58 Aligned_cols=284 Identities=11% Similarity=0.141 Sum_probs=232.1
Q ss_pred eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCC
Q 019482 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG 85 (340)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~ 85 (340)
-+.+++|++. ++||.| .++.|++|+.... .......+.+|...|++++|+|+|++|++|+.|+
T Consensus 107 y~~~l~wS~~----n~lAvg-------ld~tV~lWd~~tg------~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg 169 (420)
T 4gga_A 107 YLNLVDWSSG----NVLAVA-------LDNSVYLWSASSG------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA 169 (420)
T ss_dssp TCBCEEECTT----SEEEEE-------ETTEEEEEETTTC------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS
T ss_pred cceeEEECCC----CEEEEE-------eCCEEEEEECCCC------CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCC
Confidence 3567899863 467733 4677999998621 1122344567888999999999999999999999
Q ss_pred CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc-eeeccccCccceeEEEecC
Q 019482 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMDFSL 164 (340)
Q Consensus 86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~i~~~~~~~ 164 (340)
.|++||+.+++....+.. |...+.++.+ ++.+|++|+.|+.+++||..... .+..+..|...+..+.|+|
T Consensus 170 ~v~iWd~~~~~~~~~~~~-------h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~ 240 (420)
T 4gga_A 170 EVQLWDVQQQKRLRNMTS-------HSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 240 (420)
T ss_dssp CEEEEETTTTEEEEEECC-------CSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred eEEEEEcCCCcEEEEEeC-------CCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC
Confidence 999999999887665543 7778888776 46799999999999999988654 4455677888999999999
Q ss_pred CCCeEEEeeCCCeEEEEEccCCee----EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee
Q 019482 165 DSEFLATTSTDGSARIWKTEDGVA----WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (340)
Q Consensus 165 ~~~~l~~~~~d~~v~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 240 (340)
+++++++++.|+.+++|+..+++. +... ..+...|.+++|+|++..++ ....++.|+.|++||+++++....+
T Consensus 241 ~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~-~~~~~~V~~~~~~p~~~~~l--a~~~gs~D~~I~iwd~~t~~~~~~~ 317 (420)
T 4gga_A 241 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTF-TQHQGAVKAVAWCPWQSNVL--ATGGGTSDRHIRIWNVCSGACLSAV 317 (420)
T ss_dssp TSSEEEEEETTSCEEEEESSCCSSCSCCSEEE-CCCSSCEEEEEECTTCTTEE--EEEECTTTCEEEEEETTTTEEEEEE
T ss_pred CCCeeeeeeccccceEEeeccccccceeeeee-cccCCceeeeeeCCCcccEE--EEEeecCCCEEEEEeCCccccceee
Confidence 999999999999999999987653 2333 34557899999999988642 2456778999999999999988777
Q ss_pred eccCCCeeEEEECCCCCEEEEee--CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 241 RLLRKPASVLSISLDGKYLAMGS--KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 241 ~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
..+ ..+.++.|+|+++.+++++ .|+.|+|||+.+++++..+ .+| ...|++++|+|||++|++|+.|++|+||++.
T Consensus 318 ~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l-~gH-~~~V~~l~~spdg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 318 DAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL-KGH-TSRVLSLTMSPDGATVASAAADETLRLWRCF 394 (420)
T ss_dssp ECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE-CCC-SSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred ccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE-cCC-CCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 655 4788999999999988765 7899999999999998877 467 6799999999999999999999999999996
Q ss_pred CCC
Q 019482 319 VPA 321 (340)
Q Consensus 319 ~~~ 321 (340)
...
T Consensus 395 ~~~ 397 (420)
T 4gga_A 395 ELD 397 (420)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 61
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.2e-39 Score=276.42 Aligned_cols=246 Identities=11% Similarity=0.052 Sum_probs=214.1
Q ss_pred EecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCce--eeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcE
Q 019482 59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA--TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL 136 (340)
Q Consensus 59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 136 (340)
+..|.++|.+++|+|++++|++++.|+.|++||+.+++ ....+. .|...|.+++|+|++++|++++.||.|
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~~~~~dg~i 76 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-------EHNGQVTGVDWAPDSNRIVTCGTDRNA 76 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE-------CCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec-------CCCCcccEEEEeCCCCEEEEEcCCCeE
Confidence 45589999999999999999999999999999999876 444333 377899999999999999999999999
Q ss_pred EEEeCCCCceee--ccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee---EEEeecCCCCceeeEEEccCCCc
Q 019482 137 RIMHWPSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA---WTFLTRNSDEKIELCRFSKDGTK 211 (340)
Q Consensus 137 ~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~ 211 (340)
++||+++++... ....+...|.+++|+|++++|++++.|+.|++||++.++. ...+...+...+.+++|+|++..
T Consensus 77 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 156 (372)
T 1k8k_C 77 YVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL 156 (372)
T ss_dssp EEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred EEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCE
Confidence 999998876433 3356777999999999999999999999999999998763 34444556678999999999987
Q ss_pred ceEEEEEecCCcceEEEEEC------------------CCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEec
Q 019482 212 PFLFCTVQRGDKALLAVYDI------------------STWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDV 273 (340)
Q Consensus 212 ~~~~~~~~~~~d~~i~i~d~------------------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 273 (340)
+++++.|+.|++||+ ..++.+..+..|...+.+++|+|++++|++++.|+.|++||+
T Consensus 157 -----l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 157 -----LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp -----EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred -----EEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 788899999999995 367778888888999999999999999999999999999999
Q ss_pred cCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482 274 KKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 274 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
++++.+..+. .| ..+|.+++|+|++++|+++ .|+.+++|++..
T Consensus 232 ~~~~~~~~~~-~~-~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 232 DKKMAVATLA-SE-TLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp GGTTEEEEEE-CS-SCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CCCceeEEEc-cC-CCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 9998887664 45 5689999999999988887 899999999987
No 62
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-40 Score=280.52 Aligned_cols=251 Identities=14% Similarity=0.119 Sum_probs=211.5
Q ss_pred EEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCce--eeeeeccccCCCCCCCCCeEEEEEecC--CCeEEEccC
Q 019482 57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA--TDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGV 132 (340)
Q Consensus 57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~ 132 (340)
..+.+|.+.|++++|+|++++|++++.||.|++||+.... ....+. .|...|.+++|+++ +++|++++.
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~l~s~~~ 77 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-------GHEGPVWRVDWAHPKFGTILASCSY 77 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-------CCSSCEEEEEECCGGGCSEEEEEET
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec-------CCCCcEEEEEeCCCCCCCEEEEecc
Confidence 4678999999999999999999999999999999998433 322222 37789999999987 899999999
Q ss_pred CCcEEEEeCCCCc--eeeccccCccceeEEEecCC--CCeEEEeeCCCeEEEEEccCCee--EEEeecCCCCceeeEEEc
Q 019482 133 DGHLRIMHWPSLR--IILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFS 206 (340)
Q Consensus 133 dg~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~ 206 (340)
||.|++||+.+++ ....+..|...|.+++|+|+ +++|++++.|+.|++||++++.. ...+. .+...+.+++|+
T Consensus 78 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~v~~~~~~ 156 (379)
T 3jrp_A 78 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWA 156 (379)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE-CCTTCEEEEEEC
T ss_pred CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEec-CCCCceEEEEEc
Confidence 9999999999886 66667778889999999998 99999999999999999988743 23333 456789999999
Q ss_pred c-------------CCCcceEEEEEecCCcceEEEEECCCCc----EEeeeeccCCCeeEEEECCC---CCEEEEeeCCC
Q 019482 207 K-------------DGTKPFLFCTVQRGDKALLAVYDISTWN----KIGHKRLLRKPASVLSISLD---GKYLAMGSKDG 266 (340)
Q Consensus 207 ~-------------~~~~~~~~~~~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg 266 (340)
| ++.. +++++.|+.|++||++++. ....+..|...|.+++|+|+ +++|++++.||
T Consensus 157 ~~~~~~~~~~~~~~~~~~-----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg 231 (379)
T 3jrp_A 157 PATIEEDGEHNGTKESRK-----FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 231 (379)
T ss_dssp CCC----------CTTCE-----EEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred CccccccccccCCCCCCE-----EEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCC
Confidence 9 5776 7888999999999998765 44566778899999999999 89999999999
Q ss_pred cEEEEeccCce----EeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 267 DICVVDVKKME----INHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 267 ~i~i~d~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
.|++||+.+++ ........| ...|.+++|+|++++|++++.||.|++|++....
T Consensus 232 ~i~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 232 TCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp CEEEEEESSTTSCCEEEESSSSCC-SSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred EEEEEeCCCCCccceeeeeccccC-CCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 99999998863 221111224 5789999999999999999999999999998554
No 63
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.5e-39 Score=272.32 Aligned_cols=278 Identities=19% Similarity=0.186 Sum_probs=225.9
Q ss_pred CeeeEEEecCCCCeeEEEEcCC-CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc
Q 019482 53 PLVTYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131 (340)
Q Consensus 53 ~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 131 (340)
..+..+|+||.+.|++++|+|+ +++|++|+.|++|+|||+...+......... ...|...|.+++|+|++++|++++
T Consensus 28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~--l~~h~~~V~~~~~s~dg~~l~s~~ 105 (340)
T 4aow_A 28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRA--LRGHSHFVSDVVISSDGQFALSGS 105 (340)
T ss_dssp EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEE--ECCCSSCEEEEEECTTSSEEEEEE
T ss_pred eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEE--EeCCCCCEEEEEECCCCCEEEEEc
Confidence 3456679999999999999997 6899999999999999998754322111110 113788999999999999999999
Q ss_pred CCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCc
Q 019482 132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (340)
Q Consensus 132 ~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (340)
.|+.|++|+............+...+..+.+++++++|++++.|+.+++||+............+...+..++|++++..
T Consensus 106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 185 (340)
T 4aow_A 106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN 185 (340)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSS
T ss_pred ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCC
Confidence 99999999999888877777777788999999999999999999999999998776655555566778999999998765
Q ss_pred ceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccce
Q 019482 212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI 291 (340)
Q Consensus 212 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i 291 (340)
.+ +++++.|+.|++||+++++.+..+..|..+|++++|+|++++|++|+.|+.|++||+++.+.+..+.. ...+
T Consensus 186 ~~---~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~---~~~v 259 (340)
T 4aow_A 186 PI---IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG---GDII 259 (340)
T ss_dssp CE---EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC---SSCE
T ss_pred cE---EEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC---CceE
Confidence 43 57788999999999999999999999999999999999999999999999999999999988876642 3589
Q ss_pred eeEEEecCCeEEEEEecCCcEEEEEecCCCCC------CCCccccccccccccC
Q 019482 292 ALVEFCPTQRVVLTASKEWGAMITKLTVPADW------KGLSLPLLHSHSQNSV 339 (340)
Q Consensus 292 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~------~~~~~~~~h~~~v~~v 339 (340)
..+.|+|++. +++++.|+.|++|+++..... ........|...|++|
T Consensus 260 ~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 312 (340)
T 4aow_A 260 NALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 312 (340)
T ss_dssp EEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEE
T ss_pred EeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEE
Confidence 9999999876 556667999999998643211 1122334566666654
No 64
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.3e-39 Score=271.50 Aligned_cols=283 Identities=11% Similarity=0.021 Sum_probs=231.4
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCC-eEEEE
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCS 81 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~ 81 (340)
+..+|++++|+|+ ..++++|+ .++.|++|+++.... ......+.+|...|.+++|+|+++ +|+++
T Consensus 10 h~~~v~~~~~s~~---~~~l~~~~------~d~~v~iw~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 75 (342)
T 1yfq_A 10 PKDYISDIKIIPS---KSLLLITS------WDGSLTVYKFDIQAK-----NVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75 (342)
T ss_dssp CSSCEEEEEEEGG---GTEEEEEE------TTSEEEEEEEETTTT-----EEEEEEEEECSSCEEEEEEEESSSEEEEEE
T ss_pred CCCcEEEEEEcCC---CCEEEEEc------CCCeEEEEEeCCCCc-----cccceeeeecCCceEEEEECCCCCcEEEEE
Confidence 5678999999994 45666655 566799999974431 112344568999999999999999 99999
Q ss_pred ecCCCEEEEEe-cCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC---------Cceeeccc
Q 019482 82 TTNGGCKLFEV-YGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS---------LRIILDEP 151 (340)
Q Consensus 82 ~~d~~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---------~~~~~~~~ 151 (340)
+.||.|++||+ .+++. ..+.. ..|...|.+++|+| +++|++++.|+.|++||+++ ++.+..+.
T Consensus 76 ~~dg~i~~wd~~~~~~~-~~~~~-----~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 148 (342)
T 1yfq_A 76 TVQGEILKVDLIGSPSF-QALTN-----NEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK 148 (342)
T ss_dssp ETTSCEEEECSSSSSSE-EECBS-----CCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS
T ss_pred cCCCeEEEEEeccCCce-Eeccc-----cCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe
Confidence 99999999999 77654 22211 02778999999999 99999999999999999987 66665554
Q ss_pred cCccceeEEEecCCCCeEEEeeCCCeEEEEEccC-Cee-EEEeecCCCCceeeEEEcc-CCCcceEEEEEecCCcceEEE
Q 019482 152 KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-GVA-WTFLTRNSDEKIELCRFSK-DGTKPFLFCTVQRGDKALLAV 228 (340)
Q Consensus 152 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~-~~~-~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~d~~i~i 228 (340)
+...+.+++|+|++ +++++.|+.|++||+++ +.. .......+...+.+++|+| ++.. +++++.|+.|++
T Consensus 149 -~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~-----l~~~~~dg~i~i 220 (342)
T 1yfq_A 149 -VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEG-----YACSSIDGRVAV 220 (342)
T ss_dssp -SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCE-----EEEEETTSEEEE
T ss_pred -eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCE-----EEEEecCCcEEE
Confidence 77799999999887 99999999999999987 543 2333445567899999999 9886 788889999999
Q ss_pred EECCCC------cEEeeeeccCC---------CeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceee
Q 019482 229 YDISTW------NKIGHKRLLRK---------PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL 293 (340)
Q Consensus 229 ~d~~~~------~~~~~~~~~~~---------~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~ 293 (340)
||++.. +....+..+.. .|.+++|+|++++|++++.||.|++||+.+++.+..+. .|+..+|.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~h~~~v~~ 299 (342)
T 1yfq_A 221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA-KFNEDSVVK 299 (342)
T ss_dssp EECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-CCSSSEEEE
T ss_pred EEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh-cccCCCceE
Confidence 999887 66677777755 89999999999999999999999999999999887764 332578999
Q ss_pred EEEecCCeEEEEEecCCc-EEEEEe
Q 019482 294 VEFCPTQRVVLTASKEWG-AMITKL 317 (340)
Q Consensus 294 ~~~~~~~~~l~~~~~dg~-i~iw~~ 317 (340)
++ |++++|++++.||. .+.+..
T Consensus 300 ~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 300 IA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EE--ECSSEEEEEEECTHHHHCSSS
T ss_pred ec--CCCCeEEEEecCCcccccccc
Confidence 99 99999999999998 666654
No 65
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=8.7e-40 Score=304.32 Aligned_cols=286 Identities=12% Similarity=0.137 Sum_probs=247.8
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
+..+|+|++|+| ++.++++|+ .++.|.+|++. .......+.+|...|.+++|+|++++|++++
T Consensus 12 h~~~v~~i~~sp---~~~~la~~~------~~g~v~iwd~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 74 (814)
T 3mkq_A 12 RSDRVKGIDFHP---TEPWVLTTL------YSGRVEIWNYE--------TQVEVRSIQVTETPVRAGKFIARKNWIIVGS 74 (814)
T ss_dssp ECSCEEEEEECS---SSSEEEEEE------TTSEEEEEETT--------TTEEEEEEECCSSCEEEEEEEGGGTEEEEEE
T ss_pred CCCceEEEEECC---CCCEEEEEe------CCCEEEEEECC--------CCceEEEEecCCCcEEEEEEeCCCCEEEEEe
Confidence 357899999999 445677665 45669999987 4556677889999999999999999999999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC-ceeeccccCccceeEEE
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-RIILDEPKAHKSVLDMD 161 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~i~~~~ 161 (340)
.||.|++||+.+++....+.. |...|.+++|+|++++|++++.||.|++||++++ .....+..|...|.+++
T Consensus 75 ~dg~i~vw~~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~ 147 (814)
T 3mkq_A 75 DDFRIRVFNYNTGEKVVDFEA-------HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147 (814)
T ss_dssp TTSEEEEEETTTCCEEEEEEC-------CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEec-------CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEE
Confidence 999999999998877665532 7789999999999999999999999999999886 55566667778999999
Q ss_pred ecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEcc--CCCcceEEEEEecCCcceEEEEECCCCcEEe
Q 019482 162 FSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK--DGTKPFLFCTVQRGDKALLAVYDISTWNKIG 238 (340)
Q Consensus 162 ~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~ 238 (340)
|+| +++.|++++.|+.|++||+++++....+..++...+.+++|+| ++.. +++++.|+.|++||+++++.+.
T Consensus 148 ~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----l~~~~~dg~i~~~d~~~~~~~~ 222 (814)
T 3mkq_A 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY-----MITASDDLTIKIWDYQTKSCVA 222 (814)
T ss_dssp EETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCE-----EEEECTTSEEEEEETTTTEEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCE-----EEEEeCCCEEEEEECCCCcEEE
Confidence 999 8899999999999999999988888888777667899999999 7876 7889999999999999999999
Q ss_pred eeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeE-EEEEecCCcEEEEEe
Q 019482 239 HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRV-VLTASKEWGAMITKL 317 (340)
Q Consensus 239 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~iw~~ 317 (340)
.+..|...+.+++|+|+++++++++.||.|++||+.+++....+. .+ ...+.+++|+|+++. +++++.|+.+.+|++
T Consensus 223 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (814)
T 3mkq_A 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN-VG-LERSWCIATHPTGRKNYIASGFDNGFTVLSL 300 (814)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEEC-CS-SSSEEEEEECTTCGGGEEEEEETTEEEEEEC
T ss_pred EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cC-CCcEEEEEEccCCCceEEEEEeCCCEEEEEc
Confidence 999999999999999999999999999999999999988877664 34 468999999999863 244455677888887
Q ss_pred cC
Q 019482 318 TV 319 (340)
Q Consensus 318 ~~ 319 (340)
..
T Consensus 301 ~~ 302 (814)
T 3mkq_A 301 GN 302 (814)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 66
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.1e-39 Score=314.20 Aligned_cols=304 Identities=17% Similarity=0.176 Sum_probs=254.4
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
+...|+|++|+| ++.++++|+ .++.|++|++. +......+.+|...|.+++|+|+|++|++++
T Consensus 614 h~~~v~~~~~s~---~~~~l~s~~------~d~~i~vw~~~--------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 676 (1249)
T 3sfz_A 614 HTDAVYHACFSQ---DGQRIASCG------ADKTLQVFKAE--------TGEKLLDIKAHEDEVLCCAFSSDDSYIATCS 676 (1249)
T ss_dssp CSSCEEEEEECT---TSSEEEEEE------TTSCEEEEETT--------TCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred ccccEEEEEECC---CCCEEEEEe------CCCeEEEEECC--------CCCEEEEeccCCCCEEEEEEecCCCEEEEEe
Confidence 467899999999 456777666 56669999987 4455677889999999999999999999999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec--CCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEE
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~ 160 (340)
.|+.|++||+.+++....+.. |...|.+++|+| ++.++++++.|+.|++||+.+++....+.+|...|.++
T Consensus 677 ~d~~v~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~ 749 (1249)
T 3sfz_A 677 ADKKVKIWDSATGKLVHTYDE-------HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749 (1249)
T ss_dssp TTSEEEEEETTTCCEEEEEEC-------CSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEE
T ss_pred CCCeEEEEECCCCceEEEEcC-------CCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEE
Confidence 999999999998877665543 778999999999 55689999999999999999999998888999999999
Q ss_pred EecCCCCeEEEeeCCCeEEEEEccCCeeEEEee-----------------------------------------------
Q 019482 161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT----------------------------------------------- 193 (340)
Q Consensus 161 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----------------------------------------------- 193 (340)
+|+|+++++++++.||.|++||+++++....+.
T Consensus 750 ~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~ 829 (1249)
T 3sfz_A 750 RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS 829 (1249)
T ss_dssp EECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC
T ss_pred EEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC
Confidence 999999999999999999999998776544332
Q ss_pred -------cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCC
Q 019482 194 -------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG 266 (340)
Q Consensus 194 -------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 266 (340)
..+...+.+++|+|++.. +++++.++.|++||+.++..+..+..|...|.+++|+|+|+++++++.||
T Consensus 830 ~~~~~~~~~~~~~v~~~~~sp~~~~-----l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg 904 (1249)
T 3sfz_A 830 GLLAEIHTGHHSTIQYCDFSPYDHL-----AVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQ 904 (1249)
T ss_dssp CEEEEEECSSSSCCCEEEECSSTTE-----EEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CceeEEcCCCCCceEEEEEcCCCCE-----EEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCC
Confidence 134457888899999887 78889999999999999999999999999999999999999999999999
Q ss_pred cEEEEeccCceEeec------------------------------------ccccccccceeeEEEecCCeEEEEEecCC
Q 019482 267 DICVVDVKKMEINHW------------------------------------SKRLHLGTSIALVEFCPTQRVVLTASKEW 310 (340)
Q Consensus 267 ~i~i~d~~~~~~~~~------------------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 310 (340)
.|++||+.+...... ....+ ...+.+++|+|+++++++|+.||
T Consensus 905 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~sp~g~~l~~g~~~g 983 (1249)
T 3sfz_A 905 TIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLP-EAQVSCCCLSPHLEYVAFGDEDG 983 (1249)
T ss_dssp CEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEEC-CSCEEEEEECTTSSEEEEEETTS
T ss_pred eEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcc-cCcEEEEEEcCCCCEEEEEcCCC
Confidence 999999764211000 00011 34789999999999999999999
Q ss_pred cEEEEEecCCCCCCCCccccccccccccC
Q 019482 311 GAMITKLTVPADWKGLSLPLLHSHSQNSV 339 (340)
Q Consensus 311 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~v 339 (340)
.|++|++.... .......|...|.++
T Consensus 984 ~i~i~d~~~~~---~~~~~~~h~~~v~~l 1009 (1249)
T 3sfz_A 984 AIKIIELPNNR---VFSSGVGHKKAVRHI 1009 (1249)
T ss_dssp CCEEEETTTTS---CEEECCCCSSCCCCE
T ss_pred CEEEEEcCCCc---eeeecccCCCceEEE
Confidence 99999997544 344555777777654
No 67
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=6e-39 Score=280.15 Aligned_cols=290 Identities=15% Similarity=0.198 Sum_probs=239.3
Q ss_pred eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCC
Q 019482 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (340)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~ 86 (340)
++|+++.+ .++++|+ .++.|++|+.. +......+.+|.+.|.+++|+|++ +|++++.||.
T Consensus 125 ~~~~~~~~-----~~l~sgs------~dg~i~vwd~~--------~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~ 184 (464)
T 3v7d_B 125 ITCLQFED-----NYVITGA------DDKMIRVYDSI--------NKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRT 184 (464)
T ss_dssp EEEEEEET-----TEEEEEE------TTSCEEEEETT--------TTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSC
T ss_pred EEEEEECC-----CEEEEEc------CCCcEEEEECC--------CCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCC
Confidence 46666643 3566665 56679999987 555667888999999999999988 9999999999
Q ss_pred EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec--CCCeEEEccCCCcEEEEeCCCCcee-----------------
Q 019482 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRII----------------- 147 (340)
Q Consensus 87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~----------------- 147 (340)
|++||+.+++....+. .|...|.+++|++ +++++++++.|+.|++||++++...
T Consensus 185 i~vwd~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 257 (464)
T 3v7d_B 185 VRVWDIKKGCCTHVFE-------GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257 (464)
T ss_dssp EEEEETTTTEEEEEEC-------CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGG
T ss_pred EEEEECCCCcEEEEEC-------CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccC
Confidence 9999999888665553 2778999999994 7789999999999999999876532
Q ss_pred ------eccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecC
Q 019482 148 ------LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG 221 (340)
Q Consensus 148 ------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 221 (340)
....+|...+.++ +++++++++++.|+.|++||+++++++..+.. +...+.+++|+|+++. +++++
T Consensus 258 ~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~-----l~sg~ 329 (464)
T 3v7d_B 258 ENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG-HTDRIYSTIYDHERKR-----CISAS 329 (464)
T ss_dssp GCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEETTTTE-----EEEEE
T ss_pred CCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCCCEEEEEEcCCCCE-----EEEEe
Confidence 2344555566665 67799999999999999999999999888875 4568999999999997 78999
Q ss_pred CcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCe
Q 019482 222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (340)
Q Consensus 222 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 301 (340)
.|+.|++||+++++.+..+..|...+.++.|+ +++|++++.||.|++||+.+++...... + ...+..++|+|+++
T Consensus 330 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~-~~~~~~~~~~~~~~ 404 (464)
T 3v7d_B 330 MDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH--H-TNLSAITTFYVSDN 404 (464)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE--C-TTCCCEEEEEECSS
T ss_pred CCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec--C-CCCccEEEEEeCCC
Confidence 99999999999999999999999999999997 5799999999999999999877655432 2 56788899999999
Q ss_pred EEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482 302 VVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV 339 (340)
Q Consensus 302 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v 339 (340)
+|++++ ||.|++|++..... .......|...|.+|
T Consensus 405 ~l~~~~-dg~i~iwd~~~g~~--~~~~~~~~~~~v~~v 439 (464)
T 3v7d_B 405 ILVSGS-ENQFNIYNLRSGKL--VHANILKDADQIWSV 439 (464)
T ss_dssp EEEEEE-TTEEEEEETTTCCE--EESCTTTTCSEEEEE
T ss_pred EEEEec-CCeEEEEECCCCcE--EehhhccCCCcEEEE
Confidence 999998 89999999976542 122345566666654
No 68
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-39 Score=272.38 Aligned_cols=268 Identities=15% Similarity=0.181 Sum_probs=229.5
Q ss_pred CCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc
Q 019482 52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131 (340)
Q Consensus 52 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 131 (340)
.......+.+|.+.|++++|+|++++|++++.|+.|++||+.+++....+. .|...|.+++|+|++++|++++
T Consensus 21 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~s~~ 93 (369)
T 3zwl_B 21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD-------GHTGTIWSIDVDCFTKYCVTGS 93 (369)
T ss_dssp CSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEEC-------CCSSCEEEEEECTTSSEEEEEE
T ss_pred cccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhh-------hcCCcEEEEEEcCCCCEEEEEe
Confidence 455667899999999999999999999999999999999999887666553 2778999999999999999999
Q ss_pred CCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCC-----CeEEEEEccCCee-----------EEEeecC
Q 019482 132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTEDGVA-----------WTFLTRN 195 (340)
Q Consensus 132 ~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~v~iwd~~~~~~-----------~~~~~~~ 195 (340)
.||.|++||+.+++....+. +...+.+++|+|+++++++++.+ +.|++||++.+.. ...+. .
T Consensus 94 ~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~ 171 (369)
T 3zwl_B 94 ADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII-T 171 (369)
T ss_dssp TTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE-C
T ss_pred CCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc-C
Confidence 99999999999998887765 77799999999999999999998 9999999986542 22222 1
Q ss_pred CCC--ceeeEEEccCCCcceEEEEEecCCcceEEEEECCC-CcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEe
Q 019482 196 SDE--KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD 272 (340)
Q Consensus 196 ~~~--~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 272 (340)
+.. .+.+++|+|+++. +++++.|+.|++||+++ .+.+..+..+...+.+++|+|++++|++++.|+.|++||
T Consensus 172 ~~~~~~~~~~~~~~~~~~-----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 246 (369)
T 3zwl_B 172 HEGLDAATVAGWSTKGKY-----IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVD 246 (369)
T ss_dssp CTTCCCEEEEEECGGGCE-----EEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CcCccceeEEEEcCCCCE-----EEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEE
Confidence 222 7999999999987 78889999999999998 778888888999999999999999999999999999999
Q ss_pred ccCceEeecccccccccceeeEEEecCCeEEEEEecCC--------------cEEEEEecCCCCCCCCcccccccccccc
Q 019482 273 VKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW--------------GAMITKLTVPADWKGLSLPLLHSHSQNS 338 (340)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------------~i~iw~~~~~~~~~~~~~~~~h~~~v~~ 338 (340)
+++++....+. + ...+..++|+|+++++++++.++ .+++|++.... .......|...|.+
T Consensus 247 ~~~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~v~~ 320 (369)
T 3zwl_B 247 VSTLQVLKKYE--T-DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE---EIGRVQGHFGPLNT 320 (369)
T ss_dssp TTTCCEEEEEE--C-SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCC---EEEEEECCSSCEEE
T ss_pred CCCCceeeeec--C-CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc---chhheecccCcEEE
Confidence 99998887764 3 56899999999999999999998 78999876544 34445567666655
Q ss_pred C
Q 019482 339 V 339 (340)
Q Consensus 339 v 339 (340)
+
T Consensus 321 ~ 321 (369)
T 3zwl_B 321 V 321 (369)
T ss_dssp E
T ss_pred E
Confidence 4
No 69
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.5e-38 Score=261.64 Aligned_cols=282 Identities=11% Similarity=0.124 Sum_probs=227.6
Q ss_pred eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCC
Q 019482 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (340)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~ 86 (340)
+.+++|+++ ++||.| .|++|++|+.+.. .......+.+|...|++++|+|++++|++|+.|+.
T Consensus 28 ~~~l~WS~~----~~lAvg-------~D~tV~iWd~~tg------~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~ 90 (318)
T 4ggc_A 28 LNLVDWSSG----NVLAVA-------LDNSVYLWSASSG------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE 90 (318)
T ss_dssp CBCEEECTT----SEEEEE-------ETTEEEEEETTTC------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSE
T ss_pred ceEEEECCC----CEEEEE-------eCCEEEEEECCCC------CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCc
Confidence 467999973 367733 5778999998621 12223445678889999999999999999999999
Q ss_pred EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc-eeeccccCccceeEEEecCC
Q 019482 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMDFSLD 165 (340)
Q Consensus 87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~i~~~~~~~~ 165 (340)
|++||+.+++....+.. |...+.++ ++++..+++++.++.+++|+..... .+..+..|...+..+.++++
T Consensus 91 v~iw~~~~~~~~~~~~~-------h~~~~~~~--~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (318)
T 4ggc_A 91 VQLWDVQQQKRLRNMTS-------HSARVGSL--SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 161 (318)
T ss_dssp EEEEETTTTEEEEEEEC-------CSSCEEEE--EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT
T ss_pred EEEeecCCceeEEEecC-------ccceEEEe--ecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCC
Confidence 99999999887666543 55666654 5567799999999999999988764 44556677789999999999
Q ss_pred CCeEEEeeCCCeEEEEEccCCeeEE---EeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec
Q 019482 166 SEFLATTSTDGSARIWKTEDGVAWT---FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (340)
Q Consensus 166 ~~~l~~~~~d~~v~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 242 (340)
++++++++.|+.|++||+++++... .....+...+.++.++|++...+ .+.+++.++.|++||.+....... ..
T Consensus 162 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~i~lwd~~~~~~~~~-~~ 238 (318)
T 4ggc_A 162 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL--ATGGGTSDRHIRIWNVCSGACLSA-VD 238 (318)
T ss_dssp SSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEE--EEEECTTTCEEEEEETTTCCEEEE-EE
T ss_pred CCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEE--EEEecCCCCEEEEEeccccccccc-cc
Confidence 9999999999999999998765321 22234456799999999988643 256788999999999998877544 44
Q ss_pred cCCCeeEEEECCCCCEEEEee--CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482 243 LRKPASVLSISLDGKYLAMGS--KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 243 ~~~~i~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
+...+..+.|+|+++.+++++ .|+.|++||+++++++..+ .+| ...|++++|+||+++|++||.||+|+||++..
T Consensus 239 ~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l-~gH-~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 239 AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL-KGH-TSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE-CCC-SSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE-cCC-CCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 566899999999999887754 7999999999999998877 467 67999999999999999999999999999854
No 70
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.5e-39 Score=278.85 Aligned_cols=276 Identities=11% Similarity=0.116 Sum_probs=217.7
Q ss_pred CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC-CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCC
Q 019482 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD 111 (340)
Q Consensus 33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 111 (340)
.++.|.+|+++..+... .....+.+|.+.|++++|+| ++++|++++.||.|++||+.++...............|
T Consensus 55 ~~g~i~v~~~~~~~~~~----~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h 130 (402)
T 2aq5_A 55 GGGAFLVLPLGKTGRVD----KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH 130 (402)
T ss_dssp SSCCEEEEETTCCEECC----TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC
T ss_pred CCCEEEEEECccCCCCC----CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC
Confidence 56679999986433211 12234678999999999999 89999999999999999998874321110000011137
Q ss_pred CCCeEEEEEecCC-CeEEEccCCCcEEEEeCCCCceeecc--ccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee
Q 019482 112 AGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDE--PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA 188 (340)
Q Consensus 112 ~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~ 188 (340)
...|.+++|+|++ ++|++++.|+.|++||+++++.+..+ ..|...|.+++|+|++++|++++.|+.|++||+++++.
T Consensus 131 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 210 (402)
T 2aq5_A 131 TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTV 210 (402)
T ss_dssp SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE
T ss_pred CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCce
Confidence 8899999999998 69999999999999999999988877 67888999999999999999999999999999999999
Q ss_pred EEEe-ecCCCCceeeEEEccCCCcceEEEEEec---CCcceEEEEECCCCcE-Eeeee-ccCCCeeEEEECCCCCEEEE-
Q 019482 189 WTFL-TRNSDEKIELCRFSKDGTKPFLFCTVQR---GDKALLAVYDISTWNK-IGHKR-LLRKPASVLSISLDGKYLAM- 261 (340)
Q Consensus 189 ~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~d~~i~i~d~~~~~~-~~~~~-~~~~~i~~~~~s~~~~~l~~- 261 (340)
+..+ ..+....+.++.|+|++.. ++++ +.|+.|++||+++++. +.... .+...+.+++|+|++++|++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~-----l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 285 (402)
T 2aq5_A 211 VAEKDRPHEGTRPVHAVFVSEGKI-----LTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLC 285 (402)
T ss_dssp EEEEECSSCSSSCCEEEECSTTEE-----EEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEE
T ss_pred eeeeccCCCCCcceEEEEcCCCcE-----EEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEE
Confidence 8888 4444444899999999885 5666 7899999999998764 22222 45678999999999999975
Q ss_pred eeCCCcEEEEeccCceE-eecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482 262 GSKDGDICVVDVKKMEI-NHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 262 ~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
++.||.|++||+.+++. +..+....+..++.+++|+|++.++++ .++.+++|++..
T Consensus 286 g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 286 GKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHE 342 (402)
T ss_dssp ETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred EcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCC
Confidence 55799999999998773 322221112578999999999998765 566899999975
No 71
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.8e-39 Score=289.21 Aligned_cols=303 Identities=14% Similarity=0.064 Sum_probs=248.4
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCC-eeEEEEcC--CCCeEE
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGD-PMTIAVNP--SGDDFV 79 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~--~~~~l~ 79 (340)
..+.|++++|+| ++.++++++ ++.+.+|+++.... .......+.+|... |.+++|+| ++++|+
T Consensus 17 ~~~~v~~~~~sp---dg~~l~~~~-------~~~v~v~~~~~~~~----~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~ 82 (615)
T 1pgu_A 17 QRNFTTHLSYDP---TTNAIAYPC-------GKSAFVRCLDDGDS----KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLC 82 (615)
T ss_dssp CTTCCCCCEEET---TTTEEEEEE-------TTEEEEEECCSSCC----SSCSEEEECTTTTSCEEEEEECSSTTCCEEE
T ss_pred ccCceeEEEECC---CCCEEEEec-------CCeEEEEECCCCCC----ccccceEEecCCCceEEEEEECcCCCCCEEE
Confidence 457899999999 445677554 45699999872211 11455678999999 99999999 999999
Q ss_pred EEecCCCEEEEEecCc--------eeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC----CcEEEEeCCCCcee
Q 019482 80 CSTTNGGCKLFEVYGG--------ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----GHLRIMHWPSLRII 147 (340)
Q Consensus 80 ~~~~d~~i~iw~~~~~--------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~ 147 (340)
+++.||.|++||+.++ .....+. .|...|.+++|+|++++|++++.+ +.|++|| .++..
T Consensus 83 s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~ 153 (615)
T 1pgu_A 83 SGDESGKVIVWGWTFDKESNSVEVNVKSEFQ-------VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSL 153 (615)
T ss_dssp EEETTSEEEEEEEEEEGGGTEEEEEEEEEEE-------CCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEE
T ss_pred EecCCCEEEEEeCCCCcccccccccccchhh-------cccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcc
Confidence 9999999999999754 2222221 267899999999999999999987 6888888 56677
Q ss_pred eccccCccceeEEEecCCCC-eEEEeeCCCeEEEEEccCCeeEEEeecCCCC---ceeeEEEccC-CCcceEEEEEecCC
Q 019482 148 LDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDE---KIELCRFSKD-GTKPFLFCTVQRGD 222 (340)
Q Consensus 148 ~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~~~~~~~~~~~~ 222 (340)
..+..|...|.+++|+|+++ .+++++.|+.|++||+++++.+..+.. +.. .+.+++|+|+ ++. +++++.
T Consensus 154 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-----l~~~~~ 227 (615)
T 1pgu_A 154 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT-HHKQGSFVRDVEFSPDSGEF-----VITVGS 227 (615)
T ss_dssp EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS-SSCTTCCEEEEEECSTTCCE-----EEEEET
T ss_pred eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecc-cCCCCceEEEEEECCCCCCE-----EEEEeC
Confidence 77888888999999999998 799999999999999999999888875 445 7999999999 886 788899
Q ss_pred cceEEEEECCCCcEEeee-e---ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc--ccccceeeEEE
Q 019482 223 KALLAVYDISTWNKIGHK-R---LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL--HLGTSIALVEF 296 (340)
Q Consensus 223 d~~i~i~d~~~~~~~~~~-~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~i~~~~~ 296 (340)
|+.|++||+++++.+..+ . .|...|.+++|+ ++++|++++.|+.|++||+++++.+..+... .....+.++.|
T Consensus 228 dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (615)
T 1pgu_A 228 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA 306 (615)
T ss_dssp TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE
T ss_pred CCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe
Confidence 999999999999998888 5 788999999999 9999999999999999999998887765432 11357888888
Q ss_pred ecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482 297 CPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV 339 (340)
Q Consensus 297 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v 339 (340)
. +++++++++.||.+++|++.... .......|...|.++
T Consensus 307 ~-~~~~l~~~~~~g~i~~~d~~~~~---~~~~~~~~~~~v~~~ 345 (615)
T 1pgu_A 307 T-GNGRIISLSLDGTLNFYELGHDE---VLKTISGHNKGITAL 345 (615)
T ss_dssp E-ETTEEEEEETTSCEEEEETTEEE---EEEEECCCSSCEEEE
T ss_pred C-CCCeEEEEECCCCEEEEECCCCc---EEEEEeCCCCCEEEE
Confidence 5 88999999999999999986532 344455676666554
No 72
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.1e-38 Score=275.63 Aligned_cols=300 Identities=13% Similarity=0.130 Sum_probs=234.0
Q ss_pred CceeEEeeeeecCCC-------ccEEEEcCCCCcccCCCceEEEEeCCC--------------CCCc----ccCC-eeeE
Q 019482 4 GGTVTCGSWIKRPEN-------VNLVVLGKSSRASSSPSVLEIFSFDPK--------------TTSV----YTSP-LVTY 57 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~-------~~~~~~g~~~~~~~~~~~i~i~~~~~~--------------~~~~----~~~~-~~~~ 57 (340)
..|..|+.|.|+... ...+++|..... ..+.|.+++++.. .... ...+ ....
T Consensus 45 ~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~--~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 122 (430)
T 2xyi_A 45 EWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD--EQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIE 122 (430)
T ss_dssp SSCCSCEEECSCCEECTTCSCEEEEEEEECCCSS--SCEEEEEEEEEEC--------------------------CEEEE
T ss_pred CCCceEEEECcccccccCCCcceEEEEEEEcCCC--CCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEE
Confidence 457889999996421 245677776442 6788888876510 0000 1112 2235
Q ss_pred EEecCCCCeeEEEEcCC-CCeEEEEecCCCEEEEEecCc----------eeeeeeccccCCCCCCCCCeEEEEEecCCC-
Q 019482 58 VFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGG----------ATDINLLAKKMPPLQDAGPQKCLSFSVDGS- 125 (340)
Q Consensus 58 ~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iw~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 125 (340)
....|.+.|++++|+|+ +.+|++++.+|.|++|++... .....+. .|...|.+++|+|++.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~ 195 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-------GHQKEGYGLSWNPNLNG 195 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-------CCSSCCCCEEECTTSTT
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-------CCCCCeEEEEeCCCCCC
Confidence 56789999999999997 679999999999999999762 2222221 3778999999999988
Q ss_pred eEEEccCCCcEEEEeCCCCce-------eeccccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCC---eeEEEeec
Q 019482 126 RFAAGGVDGHLRIMHWPSLRI-------ILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDG---VAWTFLTR 194 (340)
Q Consensus 126 ~l~~~~~dg~i~~~d~~~~~~-------~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~---~~~~~~~~ 194 (340)
+|++++.||.|++|++.++.. ...+..|...|.+++|+| ++.+|++++.|+.|++||++++ +.+..+.
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~- 274 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD- 274 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-
T ss_pred eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-
Confidence 999999999999999987432 234556777899999999 7788999999999999999987 4555665
Q ss_pred CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC-CcEEeeeeccCCCeeEEEECCCCC-EEEEeeCCCcEEEEe
Q 019482 195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGHKRLLRKPASVLSISLDGK-YLAMGSKDGDICVVD 272 (340)
Q Consensus 195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d 272 (340)
.+...+.+++|+|++..+ +++++.|+.|++||+++ ..++..+..|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 275 ~~~~~v~~i~~~p~~~~~----l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd 350 (430)
T 2xyi_A 275 AHTAEVNCLSFNPYSEFI----LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350 (430)
T ss_dssp CCSSCEEEEEECSSCTTE----EEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEE
T ss_pred cCCCCeEEEEeCCCCCCE----EEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEe
Confidence 455789999999999853 67889999999999998 456778888999999999999985 699999999999999
Q ss_pred ccCc--------------eEeecccccccccceeeEEEecCCe-EEEEEecCCcEEEEEecC
Q 019482 273 VKKM--------------EINHWSKRLHLGTSIALVEFCPTQR-VVLTASKEWGAMITKLTV 319 (340)
Q Consensus 273 ~~~~--------------~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iw~~~~ 319 (340)
+... +.+... ..| ...|++++|+|+++ +|++++.||.|+||++..
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~-~~h-~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 351 LSKIGEEQSTEDAEDGPPELLFIH-GGH-TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp GGGTTCCCCHHHHHHCCTTEEEEC-CCC-SSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred CCCCccccCccccccCCcceEEEc-CCC-CCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 9872 222222 345 56899999999998 999999999999999963
No 73
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.2e-38 Score=284.04 Aligned_cols=310 Identities=16% Similarity=0.139 Sum_probs=237.5
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCC-eEEEE
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCS 81 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~ 81 (340)
...+|.+++|+|+ ..++++++.. .+....++.++ .......+.+|...|.+++|+|+++ .++++
T Consensus 115 ~~~~v~~~~~s~~---~~~l~~~~~~----~~~~~~v~~~d--------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 179 (615)
T 1pgu_A 115 LAGPISDISWDFE---GRRLCVVGEG----RDNFGVFISWD--------SGNSLGEVSGHSQRINACHLKQSRPMRSMTV 179 (615)
T ss_dssp CSSCEEEEEECTT---SSEEEEEECC----SSCSEEEEETT--------TCCEEEECCSCSSCEEEEEECSSSSCEEEEE
T ss_pred ccccEEEEEEeCC---CCEEEEeccC----CCCccEEEEEE--------CCCcceeeecCCccEEEEEECCCCCcEEEEE
Confidence 4678999999994 4456655521 22234444444 1224456789999999999999998 79999
Q ss_pred ecCCCEEEEEecCceeeeeeccccCCCCCCCC---CeEEEEEecC-CCeEEEccCCCcEEEEeCCCCceeecc-c---cC
Q 019482 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAG---PQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDE-P---KA 153 (340)
Q Consensus 82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~-~---~~ 153 (340)
+.|+.|++||+.+.+....+.. |.. .|.+++|+|+ +++|++++.||.|++||+++++.+..+ . .|
T Consensus 180 ~~d~~v~vwd~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 252 (615)
T 1pgu_A 180 GDDGSVVFYQGPPFKFSASDRT-------HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV 252 (615)
T ss_dssp ETTTEEEEEETTTBEEEEEECS-------SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC
T ss_pred eCCCcEEEEeCCCcceeeeecc-------cCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccccccc
Confidence 9999999999988876665532 556 8999999999 999999999999999999999988877 5 77
Q ss_pred ccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecC--------------------------------------
Q 019482 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN-------------------------------------- 195 (340)
Q Consensus 154 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-------------------------------------- 195 (340)
...|.+++|+ ++++|++++.|+.|++||+++++.+..+..+
T Consensus 253 ~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~ 331 (615)
T 1pgu_A 253 QGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEV 331 (615)
T ss_dssp CSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEE
T ss_pred CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcE
Confidence 7899999999 9999999999999999999877665544322
Q ss_pred ------CCCc---------------------------------eeeEEEccCCCcceE----------------------
Q 019482 196 ------SDEK---------------------------------IELCRFSKDGTKPFL---------------------- 214 (340)
Q Consensus 196 ------~~~~---------------------------------v~~~~~~~~~~~~~~---------------------- 214 (340)
+... |.+++|. ++..++.
T Consensus 332 ~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~ 410 (615)
T 1pgu_A 332 LKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNS-KAQEYSSISWDDTLKVNGITKHEFGSQPK 410 (615)
T ss_dssp EEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECC-STTCCEEEETTTEEEETTEEEEECSSCEE
T ss_pred EEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEEC-CCcEEEEEeCCCCEEEEEcccCcccCCce
Confidence 1112 2333331 1222100
Q ss_pred ----------------------------------------------EEEEecCC-cceEEEEECCCCcEE-eeeeccCCC
Q 019482 215 ----------------------------------------------FCTVQRGD-KALLAVYDISTWNKI-GHKRLLRKP 246 (340)
Q Consensus 215 ----------------------------------------------~~~~~~~~-d~~i~i~d~~~~~~~-~~~~~~~~~ 246 (340)
-.+++++. |+.|++||+.+++.. ..+..|...
T Consensus 411 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~ 490 (615)
T 1pgu_A 411 VASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAK 490 (615)
T ss_dssp EEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSC
T ss_pred EEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCc
Confidence 00233344 677777777765544 455667889
Q ss_pred eeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEec----------CCeEEEEEecCCcEEEEE
Q 019482 247 ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP----------TQRVVLTASKEWGAMITK 316 (340)
Q Consensus 247 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~----------~~~~l~~~~~dg~i~iw~ 316 (340)
|.+++|+|++++|++++.||.|++||+.+++.+..+...| ...|++++|+| ++++|++++.||.|++|+
T Consensus 491 v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~ 569 (615)
T 1pgu_A 491 PSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFR-TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS 569 (615)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCC-SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEE
T ss_pred eEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCC-CCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEE
Confidence 9999999999999999999999999999999988765436 67999999999 999999999999999999
Q ss_pred ecCCCCCCCCccccccccccccC
Q 019482 317 LTVPADWKGLSLPLLHSHSQNSV 339 (340)
Q Consensus 317 ~~~~~~~~~~~~~~~h~~~v~~v 339 (340)
+.... +.......|...|.+|
T Consensus 570 ~~~~~--~~~~~~~~h~~~v~~l 590 (615)
T 1pgu_A 570 VKRPM--KIIKALNAHKDGVNNL 590 (615)
T ss_dssp SSCTT--CCEEETTSSTTCEEEE
T ss_pred CCCCc--eechhhhcCccceEEE
Confidence 97653 3455677888888765
No 74
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.5e-39 Score=278.18 Aligned_cols=251 Identities=12% Similarity=0.082 Sum_probs=215.8
Q ss_pred eeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCce------eeeeeccccCCCCCCCCCeEEEEEecC----C
Q 019482 55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA------TDINLLAKKMPPLQDAGPQKCLSFSVD----G 124 (340)
Q Consensus 55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~----~ 124 (340)
....+.+|.+.|++++|+| ++|++++.||.|++|++.+.+ ....+. .|...|.+++|+|+ +
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~g 78 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-------VHKSGLHHVDVLQAIERDA 78 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-------CCTTCEEEEEEEEEEETTT
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEe-------cCCCcEEEEEEecccccCC
Confidence 4456789999999999998 799999999999999998876 233332 37789999999999 9
Q ss_pred ---CeEEEccCCCcEEEEeCCCCce-----eeccccC-----ccceeEEEec----CCCCe-EEEeeCCCeEEEEEccC-
Q 019482 125 ---SRFAAGGVDGHLRIMHWPSLRI-----ILDEPKA-----HKSVLDMDFS----LDSEF-LATTSTDGSARIWKTED- 185 (340)
Q Consensus 125 ---~~l~~~~~dg~i~~~d~~~~~~-----~~~~~~~-----~~~i~~~~~~----~~~~~-l~~~~~d~~v~iwd~~~- 185 (340)
++|++++.||.|++||+.+++. ...+..+ ...|.+++|+ |++++ |++++.|+.|++||+++
T Consensus 79 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 158 (397)
T 1sq9_A 79 FELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPF 158 (397)
T ss_dssp EEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESS
T ss_pred ccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcc
Confidence 9999999999999999998876 6667667 4789999999 99999 99999999999999998
Q ss_pred -----CeeEE-----Eee------cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec---c---
Q 019482 186 -----GVAWT-----FLT------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL---L--- 243 (340)
Q Consensus 186 -----~~~~~-----~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---~--- 243 (340)
++.+. .+. ..+...+.+++|+|++ . +++++.|+.|++||+++++.+..+.. |
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~-----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~ 232 (397)
T 1sq9_A 159 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L-----IATGFNNGTVQISELSTLRPLYNFESQHSMINN 232 (397)
T ss_dssp SSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E-----EEEECTTSEEEEEETTTTEEEEEEECCC---CC
T ss_pred ccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e-----EEEEeCCCcEEEEECCCCceeEEEecccccccc
Confidence 66555 553 2356689999999999 6 78999999999999999999888888 8
Q ss_pred CCCeeEEEECCCCCEEEEeeCC---CcEEEEeccCceEeeccccc------------ccccceeeEEEecCCeEEEEEec
Q 019482 244 RKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRL------------HLGTSIALVEFCPTQRVVLTASK 308 (340)
Q Consensus 244 ~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~------------~~~~~i~~~~~~~~~~~l~~~~~ 308 (340)
...+.+++|+|++++|++++.| +.|++||+++++.+..+... | ...|.+++|+|++++|++++.
T Consensus 233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~ 311 (397)
T 1sq9_A 233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH-SSWVMSLSFNDSGETLCSAGW 311 (397)
T ss_dssp CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB-SSCEEEEEECSSSSEEEEEET
T ss_pred CCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccccccc-CCcEEEEEECCCCCEEEEEeC
Confidence 8999999999999999999999 99999999998887766421 5 679999999999999999999
Q ss_pred CCcEEEEEecCCC
Q 019482 309 EWGAMITKLTVPA 321 (340)
Q Consensus 309 dg~i~iw~~~~~~ 321 (340)
||.|++|++....
T Consensus 312 dg~i~iwd~~~~~ 324 (397)
T 1sq9_A 312 DGKLRFWDVKTKE 324 (397)
T ss_dssp TSEEEEEETTTTE
T ss_pred CCeEEEEEcCCCc
Confidence 9999999997544
No 75
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-40 Score=280.88 Aligned_cols=244 Identities=11% Similarity=0.047 Sum_probs=198.6
Q ss_pred EecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCc--eeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcE
Q 019482 59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGG--ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL 136 (340)
Q Consensus 59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 136 (340)
++.|.++|++++|+|++++|++++.|+.|++||+.++ +....+. .|...|.+++|+|++++|++++.|+.|
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-------~h~~~v~~~~~s~~~~~l~s~s~d~~v 79 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFS-------DHDKIVTCVDWAPKSNRIVTCSQDRNA 79 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBC-------CCSSCEEEEEECTTTCCEEEEETTSSE
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEe-------cCCceEEEEEEeCCCCEEEEEeCCCeE
Confidence 4457789999999999999999999999999999987 3333222 378899999999999999999999999
Q ss_pred EEEeCCCCc---eeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee---EEEeecCCCCceeeEEEccCCC
Q 019482 137 RIMHWPSLR---IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA---WTFLTRNSDEKIELCRFSKDGT 210 (340)
Q Consensus 137 ~~~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~ 210 (340)
++||+.+++ ....+..|...|.+++|+|++++|++++.|+.|++||+++++. ...+...+...|.+++|+|+++
T Consensus 80 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 159 (377)
T 3dwl_C 80 YVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV 159 (377)
T ss_dssp EEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS
T ss_pred EEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC
Confidence 999999876 5666777888999999999999999999999999999998773 5666654677899999999998
Q ss_pred cceEEEEEecCCcceEEEEECC------------------CCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEe
Q 019482 211 KPFLFCTVQRGDKALLAVYDIS------------------TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD 272 (340)
Q Consensus 211 ~~~~~~~~~~~~d~~i~i~d~~------------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 272 (340)
. +++++.|+.|++||++ .++.+..+ .|...|.+++|+|++++|++++.||.|++||
T Consensus 160 ~-----l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd 233 (377)
T 3dwl_C 160 L-----LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAY 233 (377)
T ss_dssp E-----EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CE
T ss_pred E-----EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 7 7889999999999985 24455555 7888999999999999999999999999999
Q ss_pred ccCceE----eecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 273 VKKMEI----NHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 273 ~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
+.+++. +..+ ..| ..+|.+++|+|++++|++++.|+.+ +|+..
T Consensus 234 ~~~~~~~~~~~~~~-~~~-~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 234 PSAPEQPPRALITV-KLS-QLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp ECSTTSCEEECCCE-ECS-SSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCCCCcceeeEee-cCC-CCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 998876 4444 345 5789999999999999999877665 66664
No 76
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.8e-39 Score=271.08 Aligned_cols=257 Identities=16% Similarity=0.229 Sum_probs=212.2
Q ss_pred CeeeEEEecCCCCeeEEEEcCCCCeEE-EEec---CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC---CC
Q 019482 53 PLVTYVFDESEGDPMTIAVNPSGDDFV-CSTT---NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GS 125 (340)
Q Consensus 53 ~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~ 125 (340)
......+++|...|.+++|+|++..++ +++. |+.|++||+.+++....... .|...|.+++|+|+ ++
T Consensus 8 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~ 81 (357)
T 3i2n_A 8 QIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI------EKAKPIKCGTFGATSLQQR 81 (357)
T ss_dssp CEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE------EESSCEEEEECTTCCTTTC
T ss_pred HHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee------cccCcEEEEEEcCCCCCCc
Confidence 445566788999999999999997555 5555 89999999998765433221 36789999999998 69
Q ss_pred eEEEccCCCcEEEEeCCCCc-eeeccccCccceeEEE------ecCCCCeEEEeeCCCeEEEEEccCCe-eEEEeecCC-
Q 019482 126 RFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMD------FSLDSEFLATTSTDGSARIWKTEDGV-AWTFLTRNS- 196 (340)
Q Consensus 126 ~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~i~~~~------~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~- 196 (340)
+|++++.||.|++||+.+++ ....+..|...|.+++ |+|++++|++++.|+.|++||+++++ .+..+..+.
T Consensus 82 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 161 (357)
T 3i2n_A 82 YLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQG 161 (357)
T ss_dssp CEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTT
T ss_pred eEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCC
Confidence 99999999999999999887 7777778888999994 57899999999999999999999887 566664322
Q ss_pred --CCceeeEE----EccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECC---CCCEEEEeeCCCc
Q 019482 197 --DEKIELCR----FSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL---DGKYLAMGSKDGD 267 (340)
Q Consensus 197 --~~~v~~~~----~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~ 267 (340)
...+.+++ |+|++.. +++++.|+.|++||+++++.. ....+...+.+++|+| +++++++++.||.
T Consensus 162 ~~~~~v~~~~~~~~~~~~~~~-----l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 235 (357)
T 3i2n_A 162 ENKRDCWTVAFGNAYNQEERV-----VCAGYDNGDIKLFDLRNMALR-WETNIKNGVCSLEFDRKDISMNKLVATSLEGK 235 (357)
T ss_dssp SCCCCEEEEEEECCCC-CCCE-----EEEEETTSEEEEEETTTTEEE-EEEECSSCEEEEEESCSSSSCCEEEEEESTTE
T ss_pred CCCCceEEEEEEeccCCCCCE-----EEEEccCCeEEEEECccCcee-eecCCCCceEEEEcCCCCCCCCEEEEECCCCe
Confidence 33788888 7889887 788899999999999998874 4466788999999999 9999999999999
Q ss_pred EEEEeccCceEeeccc----ccccccceeeEEEecCCe-EEEEEecCCcEEEEEecCCCC
Q 019482 268 ICVVDVKKMEINHWSK----RLHLGTSIALVEFCPTQR-VVLTASKEWGAMITKLTVPAD 322 (340)
Q Consensus 268 i~i~d~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~ 322 (340)
|++||+++++....+. ..| ...|.+++|+|+++ +|++++.||.|++|++..+..
T Consensus 236 i~i~d~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 294 (357)
T 3i2n_A 236 FHVFDMRTQHPTKGFASVSEKAH-KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQ 294 (357)
T ss_dssp EEEEEEEEEETTTEEEEEEEECC-SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSC
T ss_pred EEEEeCcCCCcccceeeeccCCC-cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcc
Confidence 9999999877654432 245 67999999999998 899999999999999986553
No 77
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-39 Score=298.51 Aligned_cols=201 Identities=7% Similarity=0.055 Sum_probs=164.7
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
...+|+|++|+| +..++|+|+ .++.|++|+.. ....... ..|...|.+++|+| |++|++++
T Consensus 16 h~~~V~~lafsp---dg~~lAsgs------~Dg~I~lw~~~--------~~~~~~~-~~~~~~V~~l~fsp-g~~L~S~s 76 (902)
T 2oaj_A 16 MSSKPIAAAFDF---TQNLLAIAT------VTGEVHIYGQQ--------QVEVVIK-LEDRSAIKEMRFVK-GIYLVVIN 76 (902)
T ss_dssp CSSCEEEEEEET---TTTEEEEEE------TTSEEEEECST--------TCEEEEE-CSSCCCEEEEEEET-TTEEEEEE
T ss_pred CCCCcEEEEECC---CCCEEEEEe------CCCEEEEEeCC--------CcEEEEE-cCCCCCEEEEEEcC-CCEEEEEE
Confidence 357899999999 456788777 45669999764 2222222 34788999999999 88999999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCcee-----------eccc
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-----------LDEP 151 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-----------~~~~ 151 (340)
.|+.|++||+.+++....+. +...|.+++|+|++++|++|+.||.|++||+++++.. ....
T Consensus 77 ~D~~v~lWd~~~~~~~~~~~--------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~ 148 (902)
T 2oaj_A 77 AKDTVYVLSLYSQKVLTTVF--------VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPA 148 (902)
T ss_dssp TTCEEEEEETTTCSEEEEEE--------CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSS
T ss_pred CcCeEEEEECCCCcEEEEEc--------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccc
Confidence 99999999999877655442 5578999999999999999999999999999987653 2234
Q ss_pred cCccceeEEEecCC-CCeEEEeeCCCeEEEEEccCCeeEEEeecC-----------------CCCceeeEEEccCCCcce
Q 019482 152 KAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRN-----------------SDEKIELCRFSKDGTKPF 213 (340)
Q Consensus 152 ~~~~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~~~ 213 (340)
.|...|.+++|+|+ +..+++|+.|+.| +||+++++++..+..+ +...|.+++|+|+|..
T Consensus 149 ~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~-- 225 (902)
T 2oaj_A 149 ARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH-- 225 (902)
T ss_dssp SCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE--
T ss_pred cCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE--
Confidence 56779999999995 5789999999999 9999999988877643 2357999999999987
Q ss_pred EEEEEecCCcceEEEEECCCCcE
Q 019482 214 LFCTVQRGDKALLAVYDISTWNK 236 (340)
Q Consensus 214 ~~~~~~~~~d~~i~i~d~~~~~~ 236 (340)
+++++.|+.|++||++++++
T Consensus 226 ---lasgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 226 ---IITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp ---EEEEETTCCEEEEETTTCCE
T ss_pred ---EEEEECCCeEEEEECCCCcE
Confidence 78999999999999876654
No 78
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.8e-38 Score=290.14 Aligned_cols=257 Identities=19% Similarity=0.207 Sum_probs=215.6
Q ss_pred eeEEEecCCCCeeEEEEcCCC-CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC
Q 019482 55 VTYVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD 133 (340)
Q Consensus 55 ~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 133 (340)
....+++|.+.|++++|+|++ ++|++|+.|+.|++|++........... .....|...|.+++|+|++++|++|+.|
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~--~~~~~h~~~v~~v~~s~~g~~l~sgs~D 451 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQ--RRLTGHSHFVEDVVLSSDGQFALSGSWD 451 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEE--EEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccccc--ceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 345688999999999999875 6899999999999999976432110000 0011388999999999999999999999
Q ss_pred CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee--cCCCCceeeEEEccCCCc
Q 019482 134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKIELCRFSKDGTK 211 (340)
Q Consensus 134 g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~ 211 (340)
|.|++||+.+++....+.+|...|.+++|+|++++|++++.|++|++||........... ..|...|.+++|+|++..
T Consensus 452 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 531 (694)
T 3dm0_A 452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ 531 (694)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence 999999999999888888999999999999999999999999999999986554333222 245567999999998743
Q ss_pred ceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccce
Q 019482 212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI 291 (340)
Q Consensus 212 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i 291 (340)
.. +++++.|+.|++||+++++....+..|...|++++|+|++++|++++.||.|++||+.+++.+..+.. ...|
T Consensus 532 ~~---l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~---~~~v 605 (694)
T 3dm0_A 532 PT---IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA---NSVI 605 (694)
T ss_dssp CE---EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC---SSCE
T ss_pred ce---EEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC---CCcE
Confidence 22 68889999999999999999989999999999999999999999999999999999999998876532 3579
Q ss_pred eeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482 292 ALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 292 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
.+++|+|++.+|++++ |+.|+||++...
T Consensus 606 ~~~~~sp~~~~l~~~~-~~~i~iwd~~~~ 633 (694)
T 3dm0_A 606 HALCFSPNRYWLCAAT-EHGIKIWDLESK 633 (694)
T ss_dssp EEEEECSSSSEEEEEE-TTEEEEEETTTT
T ss_pred EEEEEcCCCcEEEEEc-CCCEEEEECCCC
Confidence 9999999998877765 566999998754
No 79
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.1e-38 Score=259.45 Aligned_cols=246 Identities=12% Similarity=0.106 Sum_probs=196.8
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC--CCCeEEE
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVC 80 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~ 80 (340)
+..+|++++|+| ++.++++|+ .|+.|++|+++... ......+.+|.+.|.+++|+| ++++|++
T Consensus 8 h~~~V~~~~~s~---~g~~las~s------~D~~v~iw~~~~~~------~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s 72 (297)
T 2pm7_B 8 HNEMIHDAVMDY---YGKRMATCS------SDKTIKIFEVEGET------HKLIDTLTGHEGPVWRVDWAHPKFGTILAS 72 (297)
T ss_dssp CSSCEEEEEECT---TSSEEEEEE------TTSCEEEEEBCSSC------BCCCEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred CcCceEEEEECC---CCCEEEEEe------CCCEEEEEecCCCC------cEEEEEEccccCCeEEEEecCCCcCCEEEE
Confidence 467899999999 445677666 56679999986322 223467889999999999986 3899999
Q ss_pred EecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC--CCeEEEccCCCcEEEEeCCCCce--eeccccCccc
Q 019482 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKS 156 (340)
Q Consensus 81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~ 156 (340)
++.|++|++||+.+++....... ..|...|.+++|+|+ +.+|++++.|+.|++||++++.. ...+..|...
T Consensus 73 ~s~D~~v~iWd~~~~~~~~~~~~-----~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~ 147 (297)
T 2pm7_B 73 CSYDGKVMIWKEENGRWSQIAVH-----AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 147 (297)
T ss_dssp EETTTEEEEEEBSSSCBCCCEEE-----CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSC
T ss_pred EcCCCEEEEEEcCCCceEEEEEe-----ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCc
Confidence 99999999999987642111111 137789999999997 88999999999999999987632 3445677789
Q ss_pred eeEEEecCC-------------CCeEEEeeCCCeEEEEEccCCe----eEEEeecCCCCceeeEEEccCC---CcceEEE
Q 019482 157 VLDMDFSLD-------------SEFLATTSTDGSARIWKTEDGV----AWTFLTRNSDEKIELCRFSKDG---TKPFLFC 216 (340)
Q Consensus 157 i~~~~~~~~-------------~~~l~~~~~d~~v~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~ 216 (340)
|.+++|+|+ +++|++|+.|++|++||+++++ ....+. .|...|.+++|+|++ .+
T Consensus 148 v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-~H~~~V~~v~~sp~~~~~~~----- 221 (297)
T 2pm7_B 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSY----- 221 (297)
T ss_dssp EEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEE-----
T ss_pred cceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec-CCCCceEEEEECCCCCCceE-----
Confidence 999999997 5789999999999999998765 444554 456789999999996 43
Q ss_pred EEecCCcceEEEEECCCCc---EEeee--eccCCCeeEEEECCCCCEEEEeeCCCcEEEEecc
Q 019482 217 TVQRGDKALLAVYDISTWN---KIGHK--RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK 274 (340)
Q Consensus 217 ~~~~~~d~~i~i~d~~~~~---~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 274 (340)
+++++.|+.|++||+++.. ....+ ..+...+.+++|+|+|++|++++.|+.|++|+..
T Consensus 222 las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 222 MASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 7889999999999998743 11122 4567789999999999999999999999999976
No 80
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1e-38 Score=297.06 Aligned_cols=251 Identities=12% Similarity=0.139 Sum_probs=223.2
Q ss_pred eeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC
Q 019482 55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (340)
Q Consensus 55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 134 (340)
....+.+|.+.|.+++|+|++++|++++.||.|++||+.++.....+.. |..+|.+++|+|++++|++++.||
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~dg 77 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQV-------TETPVRAGKFIARKNWIIVGSDDF 77 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC-------CSSCEEEEEEEGGGTEEEEEETTS
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEec-------CCCcEEEEEEeCCCCEEEEEeCCC
Confidence 3466889999999999999999999999999999999998877665543 778999999999999999999999
Q ss_pred cEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCC-eeEEEeecCCCCceeeEEEcc-CCCcc
Q 019482 135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSK-DGTKP 212 (340)
Q Consensus 135 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~~ 212 (340)
.|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|++||++++ .....+. .+...+.+++|+| ++..
T Consensus 78 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~- 155 (814)
T 3mkq_A 78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPKDPST- 155 (814)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE-CCSSCEEEEEEETTEEEE-
T ss_pred eEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc-CCCCcEEEEEEEcCCCCE-
Confidence 9999999999998888888899999999999999999999999999999987 4445554 4567899999999 6665
Q ss_pred eEEEEEecCCcceEEEEECCCCcEEeeeeccC-CCeeEEEECC--CCCEEEEeeCCCcEEEEeccCceEeeccccccccc
Q 019482 213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-KPASVLSISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGT 289 (340)
Q Consensus 213 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~i~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 289 (340)
+++++.|+.|++||+++++....+..+. ..+..++|+| ++.++++++.||.|++||+.+++.+..+. .| ..
T Consensus 156 ----l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~-~~ 229 (814)
T 3mkq_A 156 ----FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-GH-MS 229 (814)
T ss_dssp ----EEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE-CC-SS
T ss_pred ----EEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc-CC-CC
Confidence 7888999999999999888776666554 7899999999 99999999999999999999998877663 45 57
Q ss_pred ceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482 290 SIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 290 ~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
.|.+++|+|++++|++++.||.|++|++...
T Consensus 230 ~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~ 260 (814)
T 3mkq_A 230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 8999999999999999999999999998653
No 81
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.5e-39 Score=311.32 Aligned_cols=310 Identities=16% Similarity=0.158 Sum_probs=254.4
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
...+|.+++|+|+ ..++++|+ .++.+.+|+++ .......+.+|...|.+++|+|+|++|++++
T Consensus 839 ~~~~v~~~~~sp~---~~~l~~~~------~dg~v~vwd~~--------~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s 901 (1249)
T 3sfz_A 839 HHSTIQYCDFSPY---DHLAVIAL------SQYCVELWNID--------SRLKVADCRGHLSWVHGVMFSPDGSSFLTAS 901 (1249)
T ss_dssp SSSCCCEEEECSS---TTEEEEEC------SSSCEEEEETT--------TTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCceEEEEEcCC---CCEEEEEe------CCCeEEEEEcC--------CCceeeecCCCccceEEEEECCCCCEEEEEe
Confidence 3578899999994 45677666 45669999987 5556677889999999999999999999999
Q ss_pred cCCCEEEEEecCceeeee----------------------------ecc--ccCCCCCCCCCeEEEEEecCCCeEEEccC
Q 019482 83 TNGGCKLFEVYGGATDIN----------------------------LLA--KKMPPLQDAGPQKCLSFSVDGSRFAAGGV 132 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~----------------------------~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 132 (340)
.|+.|++|++.+...... ... .......+...+.+++|+|+++++++|+.
T Consensus 902 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~ 981 (1249)
T 3sfz_A 902 DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDE 981 (1249)
T ss_dssp TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEET
T ss_pred CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcC
Confidence 999999999764211000 000 00000113467999999999999999999
Q ss_pred CCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcc
Q 019482 133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP 212 (340)
Q Consensus 133 dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (340)
+|.|++||+.+++....+..|...|.+++|+|+++++++++.|+.|++||+.+++..... .+...+.++.|+|++.
T Consensus 982 ~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~v~~~~~~~~~~-- 1057 (1249)
T 3sfz_A 982 DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ--AHQETVKDFRLLQDSR-- 1057 (1249)
T ss_dssp TSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCB--CCSSCEEEEEECSSSE--
T ss_pred CCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEe--cCCCcEEEEEEcCCCc--
Confidence 999999999999988888888899999999999999999999999999999998876433 4567899999999876
Q ss_pred eEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccccccee
Q 019482 213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292 (340)
Q Consensus 213 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~ 292 (340)
+++++.|+.|++||+.+++.+..+..|...+.+++|+|+++++++++.|+.|++||+.+++....+ ..| ...|+
T Consensus 1058 ----l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l-~~h-~~~v~ 1131 (1249)
T 3sfz_A 1058 ----LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL-KGH-NGCVR 1131 (1249)
T ss_dssp ----EEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCC-CCC-SSCEE
T ss_pred ----EEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeee-ccC-CCcEE
Confidence 688889999999999999999999999999999999999999999999999999999998887766 356 57999
Q ss_pred eEEEecCCeEEEEEecCCcEEEEEecCCCCCCCC------ccccccccccccC
Q 019482 293 LVEFCPTQRVVLTASKEWGAMITKLTVPADWKGL------SLPLLHSHSQNSV 339 (340)
Q Consensus 293 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~------~~~~~h~~~v~~v 339 (340)
+++|+|++++|++++.||.|++|++......... .....|...|.++
T Consensus 1132 ~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 1184 (1249)
T 3sfz_A 1132 CSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1184 (1249)
T ss_dssp EEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEE
Confidence 9999999999999999999999999865532211 1124566666654
No 82
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-38 Score=271.57 Aligned_cols=248 Identities=10% Similarity=0.028 Sum_probs=203.8
Q ss_pred ecCCCCeeEEEEcCCCCeE-EEEecCCCEEEEEec--CceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcE
Q 019482 60 DESEGDPMTIAVNPSGDDF-VCSTTNGGCKLFEVY--GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL 136 (340)
Q Consensus 60 ~~h~~~v~~~~~~~~~~~l-~~~~~d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 136 (340)
.+|.+.|.+++|+|++++| ++++.|+.|++||+. +++....+... .+...|.+++|+|++++|++++.+|.|
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----~~~~~v~~~~~sp~~~~l~~~~~~g~v 173 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF-----CFSKRPNAISIAEDDTTVIIADKFGDV 173 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE-----ECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc-----cCCCCceEEEEcCCCCEEEEEeCCCcE
Confidence 3566789999999999996 889999999999998 66655444321 256789999999999999999999999
Q ss_pred EEEeCCCCceee----ccccCccceeEEEecCC---CCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCC
Q 019482 137 RIMHWPSLRIIL----DEPKAHKSVLDMDFSLD---SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209 (340)
Q Consensus 137 ~~~d~~~~~~~~----~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (340)
++|++.+++... .+..|...|.+++|+|+ +++|++++.|+.|++||+++++.+..+...+...|.+++|+ ++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~ 252 (450)
T 2vdu_B 174 YSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KD 252 (450)
T ss_dssp EEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-ST
T ss_pred EEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CC
Confidence 999998876543 56677889999999999 99999999999999999999988887665667789999999 88
Q ss_pred CcceEEEEEecCCcceEEEEECCCCcEEeeeec-------------------------cCCCeeEEEECCCCCEEEEee-
Q 019482 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-------------------------LRKPASVLSISLDGKYLAMGS- 263 (340)
Q Consensus 210 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-------------------------~~~~i~~~~~s~~~~~l~~~~- 263 (340)
.. +++++.|+.|++||+++++.+..+.. ....+..+.|+|++++|++++
T Consensus 253 ~~-----l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 327 (450)
T 2vdu_B 253 YL-----LLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVE 327 (450)
T ss_dssp TE-----EEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEET
T ss_pred CE-----EEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEEC
Confidence 87 78889999999999999998777653 235688999999999999998
Q ss_pred CCCcEEEEec--cCc---eEeecccccccccceeeEEEecCCeEEEEEec------CCcEEEEEecCCC
Q 019482 264 KDGDICVVDV--KKM---EINHWSKRLHLGTSIALVEFCPTQRVVLTASK------EWGAMITKLTVPA 321 (340)
Q Consensus 264 ~dg~i~i~d~--~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~ 321 (340)
.|+.|++|++ .++ +.+..+. .+ ..|.+++|+|++.++++++. +..|.+|.++...
T Consensus 328 ~d~~i~iw~~~~~~~~~l~~~~~~~-~~--~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~ 393 (450)
T 2vdu_B 328 ATKCIIILEMSEKQKGDLALKQIIT-FP--YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNE 393 (450)
T ss_dssp TCSEEEEEEECSSSTTCEEEEEEEE-CS--SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTT
T ss_pred CCCeEEEEEeccCCCCceeeccEec-cC--CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCC
Confidence 8999999999 554 4444443 33 58999999996544444443 4568999987553
No 83
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=6.7e-38 Score=268.74 Aligned_cols=296 Identities=14% Similarity=0.093 Sum_probs=229.7
Q ss_pred CCceeEEeeeee-cCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEE-----EecCCCCeeEEEEcC-CC
Q 019482 3 GGGTVTCGSWIK-RPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYV-----FDESEGDPMTIAVNP-SG 75 (340)
Q Consensus 3 ~~~~v~~~~w~~-~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-----~~~h~~~v~~~~~~~-~~ 75 (340)
+..+|+|++|+| +. .++++|+ .++.|++|+++............... ..+|...|.+++|+| ++
T Consensus 42 h~~~v~~~~~s~~~~---~~l~~~~------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 112 (408)
T 4a11_B 42 HGGGINTLDIEPVEG---RYMLSGG------SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT 112 (408)
T ss_dssp CSSCEEEEEECTTTC---CEEEEEE------TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT
T ss_pred cCCcEEEEEEecCCC---CEEEEEc------CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC
Confidence 568999999999 43 4566655 56679999987443222111000000 135999999999999 77
Q ss_pred CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC---CCeEEEccCCCcEEEEeCCCCceeecccc
Q 019482 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGVDGHLRIMHWPSLRIILDEPK 152 (340)
Q Consensus 76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 152 (340)
.+|++++.|+.|++||+.+++....+. +...+.++.|+|. +.++++++.|+.|++||+++++....+..
T Consensus 113 ~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 184 (408)
T 4a11_B 113 GMFTSSSFDKTLKVWDTNTLQTADVFN--------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG 184 (408)
T ss_dssp TCEEEEETTSEEEEEETTTTEEEEEEE--------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC
T ss_pred cEEEEEeCCCeEEEeeCCCCccceecc--------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC
Confidence 899999999999999999887655442 4578899999984 44999999999999999999988888888
Q ss_pred CccceeEEEecCCCCe-EEEeeCCCeEEEEEccCCe-eEEEee--------------cCCCCceeeEEEccCCCcceEEE
Q 019482 153 AHKSVLDMDFSLDSEF-LATTSTDGSARIWKTEDGV-AWTFLT--------------RNSDEKIELCRFSKDGTKPFLFC 216 (340)
Q Consensus 153 ~~~~i~~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~-~~~~~~--------------~~~~~~v~~~~~~~~~~~~~~~~ 216 (340)
|...|.+++|+|+++. +++++.|+.|++||++++. ++..+. ..+...|.+++|+|+++.
T Consensus 185 ~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----- 259 (408)
T 4a11_B 185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH----- 259 (408)
T ss_dssp CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE-----
T ss_pred CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCE-----
Confidence 8889999999999984 8899999999999998765 333331 245568999999999987
Q ss_pred EEecCCcceEEEEECCCCcEEeeeeccC-----CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccce
Q 019482 217 TVQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI 291 (340)
Q Consensus 217 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i 291 (340)
+++++.|+.|++||+++++.......+. ..+........+..+++++.++.|++||+.+++.+..+. .| ...|
T Consensus 260 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~-~~~v 337 (408)
T 4a11_B 260 LLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK-GH-YKTV 337 (408)
T ss_dssp EEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC-CC-SSCE
T ss_pred EEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec-cC-CCeE
Confidence 7888999999999999887654333221 122222233445667777889999999999999887763 56 5799
Q ss_pred eeEEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482 292 ALVEFCPTQRVVLTASKEWGAMITKLTVPAD 322 (340)
Q Consensus 292 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 322 (340)
++++|+|++++|++++.||.|++|++.....
T Consensus 338 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 338 DCCVFQSNFQELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred EEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence 9999999999999999999999999986553
No 84
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-39 Score=279.93 Aligned_cols=257 Identities=9% Similarity=0.085 Sum_probs=209.7
Q ss_pred CeeeEEE-ecCCCCeeEEEEcC-CCCeEEEEecCCCEEEEEecC---ceeeeeeccccCCCCCCCCCeEEEEEecCCCeE
Q 019482 53 PLVTYVF-DESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYG---GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF 127 (340)
Q Consensus 53 ~~~~~~~-~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 127 (340)
......+ ++|.+.|++++|+| ++++|++|+.||.|++||+.+ +...... ....|...|.+++|+|++++|
T Consensus 52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~l 126 (437)
T 3gre_A 52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSS-----LTYDCSSTVTQITMIPNFDAF 126 (437)
T ss_dssp CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCS-----EEEECSSCEEEEEECTTSSEE
T ss_pred ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccccee-----eeccCCCCEEEEEEeCCCCEE
Confidence 3444566 88999999999999 999999999999999999976 3211101 112378899999999999999
Q ss_pred EEccCCCcEEEEeCC---CCceeecccc------------CccceeEEE--ecCCCCeEEEeeCCCeEEEEEccCCeeEE
Q 019482 128 AAGGVDGHLRIMHWP---SLRIILDEPK------------AHKSVLDMD--FSLDSEFLATTSTDGSARIWKTEDGVAWT 190 (340)
Q Consensus 128 ~~~~~dg~i~~~d~~---~~~~~~~~~~------------~~~~i~~~~--~~~~~~~l~~~~~d~~v~iwd~~~~~~~~ 190 (340)
++++.||.|++||++ +++....... +...+.++. +++++++|++++.|+.|++||+++++++.
T Consensus 127 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 206 (437)
T 3gre_A 127 AVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQ 206 (437)
T ss_dssp EEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence 999999999999995 4443322211 334566666 55789999999999999999999999999
Q ss_pred EeecC-CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee-ccCCCeeEEEEC----CCCCEEEEeeC
Q 019482 191 FLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSIS----LDGKYLAMGSK 264 (340)
Q Consensus 191 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s----~~~~~l~~~~~ 264 (340)
.+... +...|.+++|+|++.. +++++.|+.|++||+++++.+..+. .+..+|.+++|+ |++.+|++++.
T Consensus 207 ~~~~~~h~~~v~~~~~s~~~~~-----l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~ 281 (437)
T 3gre_A 207 IIENSPRHGAVSSICIDEECCV-----LILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS 281 (437)
T ss_dssp EEECCGGGCCEEEEEECTTSCE-----EEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEEST
T ss_pred EEccCCCCCceEEEEECCCCCE-----EEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcC
Confidence 88763 5578999999999987 7899999999999999999888775 677789999665 46889999999
Q ss_pred CCcEEEEeccCceEeeccccc-------------------------ccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482 265 DGDICVVDVKKMEINHWSKRL-------------------------HLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 265 dg~i~i~d~~~~~~~~~~~~~-------------------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
||.|++||+++++.+..+... | ...|++++|+ ++++|++++.||.|++|++..
T Consensus 282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 282 KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS-LNALSTISVS-NDKILLTDEATSSIVMFSLNE 359 (437)
T ss_dssp TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS-GGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC
T ss_pred CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc-CCceEEEEEC-CceEEEecCCCCeEEEEECCC
Confidence 999999999988866554311 3 4679999999 789999999999999999976
Q ss_pred CC
Q 019482 320 PA 321 (340)
Q Consensus 320 ~~ 321 (340)
..
T Consensus 360 ~~ 361 (437)
T 3gre_A 360 LS 361 (437)
T ss_dssp GG
T ss_pred cc
Confidence 54
No 85
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.1e-37 Score=269.83 Aligned_cols=272 Identities=14% Similarity=0.188 Sum_probs=226.5
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
..+|+|++|.. .++++|+ .++.|++|+.. +......+.+|...|.+++| ++++|++|+.
T Consensus 133 ~~~v~~~~~d~-----~~l~~g~------~dg~i~iwd~~--------~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~ 191 (435)
T 1p22_A 133 SKGVYCLQYDD-----QKIVSGL------RDNTIKIWDKN--------TLECKRILTGHTGSVLCLQY--DERVIITGSS 191 (435)
T ss_dssp CCCEEEEECCS-----SEEEEEE------SSSCEEEEESS--------SCCEEEEECCCSSCEEEEEC--CSSEEEEEET
T ss_pred CCcEEEEEECC-----CEEEEEe------CCCeEEEEeCC--------CCeEEEEEcCCCCcEEEEEE--CCCEEEEEcC
Confidence 45688888832 4566665 56679999986 44556778899999999999 7889999999
Q ss_pred CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCcee---eccccCccceeEE
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII---LDEPKAHKSVLDM 160 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~---~~~~~~~~~i~~~ 160 (340)
||.|++||+.+++....+. .|...|.+++|++ .++++++.||.|++||+++++.. ..+.+|...|.++
T Consensus 192 dg~i~vwd~~~~~~~~~~~-------~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~ 262 (435)
T 1p22_A 192 DSTVRVWDVNTGEMLNTLI-------HHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 262 (435)
T ss_dssp TSCEEEEESSSCCEEEEEC-------CCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEE
T ss_pred CCeEEEEECCCCcEEEEEc-------CCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEE
Confidence 9999999999887765553 2778999999974 59999999999999999887655 5566777899999
Q ss_pred EecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee
Q 019482 161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (340)
Q Consensus 161 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 240 (340)
+| +++++++++.|+.|++||+++++.+..+.. +...+.++.|+ +.. +++++.|+.|++||+++++.+..+
T Consensus 263 ~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~--~~~-----l~~g~~dg~i~iwd~~~~~~~~~~ 332 (435)
T 1p22_A 263 DF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNG-HKRGIACLQYR--DRL-----VVSGSSDNTIRLWDIECGACLRVL 332 (435)
T ss_dssp EE--ETTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEEE--TTE-----EEEEETTSCEEEEETTTCCEEEEE
T ss_pred Ee--CCCEEEEEeCCCeEEEEECCcCcEEEEEcC-CCCcEEEEEeC--CCE-----EEEEeCCCeEEEEECCCCCEEEEE
Confidence 99 688999999999999999999999988875 44679999984 444 788999999999999999999999
Q ss_pred eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce---------EeecccccccccceeeEEEecCCeEEEEEecCCc
Q 019482 241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME---------INHWSKRLHLGTSIALVEFCPTQRVVLTASKEWG 311 (340)
Q Consensus 241 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 311 (340)
..|...+.+++| ++++|++|+.||.|++||+.+++ .+..+ ..| ...|.+++| ++++|++++.||.
T Consensus 333 ~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~h-~~~v~~l~~--~~~~l~s~s~Dg~ 406 (435)
T 1p22_A 333 EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL-VEH-SGRVFRLQF--DEFQIVSSSHDDT 406 (435)
T ss_dssp CCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE-CCC-SSCCCCEEE--CSSCEEECCSSSE
T ss_pred eCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec-cCC-CCCeEEEEe--CCCEEEEEeCCCE
Confidence 999999999998 78899999999999999998765 44444 355 578999999 7888999999999
Q ss_pred EEEEEecCCC
Q 019482 312 AMITKLTVPA 321 (340)
Q Consensus 312 i~iw~~~~~~ 321 (340)
|++|++....
T Consensus 407 i~iwd~~~~~ 416 (435)
T 1p22_A 407 ILIWDFLNDP 416 (435)
T ss_dssp EEEEC-----
T ss_pred EEEEECCCCC
Confidence 9999997654
No 86
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.2e-37 Score=261.78 Aligned_cols=293 Identities=11% Similarity=0.050 Sum_probs=231.9
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
+..+|+|++|+|+..++.++++|+ .++.|++|+++... ......+.+|...|.+++|+|++++|++++
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~------~dg~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGS------WANDVRCWEVQDSG------QTIPKAQQMHTGPVLDVCWSDDGSKVFTAS 105 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEE------TTSEEEEEEECTTS------CEEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred CCCceEEEEEcCCCCCceEEEEEC------CCCcEEEEEcCCCC------ceeEEEeccccCCEEEEEECcCCCEEEEEc
Confidence 468999999999642246777666 56669999997422 223356888999999999999999999999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEE--ecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEE
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF--SVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~ 160 (340)
.|+.|++||+.+++..... .|...|.+++| +|++++|++++.||.|++||+++++.+..+..+ ..+.++
T Consensus 106 ~dg~v~iwd~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~ 176 (368)
T 3mmy_A 106 CDKTAKMWDLSSNQAIQIA--------QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP-ERCYCA 176 (368)
T ss_dssp TTSEEEEEETTTTEEEEEE--------ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS-SCEEEE
T ss_pred CCCcEEEEEcCCCCceeec--------cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC-CCceEE
Confidence 9999999999988755422 37789999999 889999999999999999999998877766544 466666
Q ss_pred EecCCCCeEEEeeCCCeEEEEEccCCeeEEE-eecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC---cE
Q 019482 161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTF-LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW---NK 236 (340)
Q Consensus 161 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~---~~ 236 (340)
.+. ...+++++.++.+++|+++....... ..........++.+.++..... ..+++++.|+.|++||++.. ..
T Consensus 177 ~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~i~i~~~~~~~~~~~ 253 (368)
T 3mmy_A 177 DVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKP-TGFALGSIEGRVAIHYINPPNPAKD 253 (368)
T ss_dssp EEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCE-EEEEEEETTSEEEEEESSCSCHHHH
T ss_pred Eec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCC-CeEEEecCCCcEEEEecCCCCcccc
Confidence 666 45788888899999999987654333 3333344566777766654311 11688899999999999987 44
Q ss_pred EeeeeccCC------------CeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEE
Q 019482 237 IGHKRLLRK------------PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL 304 (340)
Q Consensus 237 ~~~~~~~~~------------~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 304 (340)
+..+..|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+. .| ..+|.+++|+|++++|+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~-~~~v~~~~~s~~g~~l~ 331 (368)
T 3mmy_A 254 NFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-QL-DQPISACCFNHNGNIFA 331 (368)
T ss_dssp SEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-CC-SSCEEEEEECTTSSCEE
T ss_pred ceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec-CC-CCCceEEEECCCCCeEE
Confidence 555666654 69999999999999999999999999999999887764 55 57999999999999999
Q ss_pred EEecCCcEEEEEecCCC
Q 019482 305 TASKEWGAMITKLTVPA 321 (340)
Q Consensus 305 ~~~~dg~i~iw~~~~~~ 321 (340)
+++.|+..+.|++....
T Consensus 332 ~~s~d~~~~~~~~~~~~ 348 (368)
T 3mmy_A 332 YASSYDWSKGHEFYNPQ 348 (368)
T ss_dssp EEECCCSTTCGGGCCTT
T ss_pred EEecccccccccccCCC
Confidence 99999877766655433
No 87
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-38 Score=291.92 Aligned_cols=291 Identities=10% Similarity=0.107 Sum_probs=208.7
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEec------------------CCC
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE------------------SEG 64 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~------------------h~~ 64 (340)
+.++|++++|+|+. ..++++|+ .++.+ +|++.. ......+.+ |..
T Consensus 150 h~~~V~sl~~sp~~--~~~l~~g~------~dg~v-lWd~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~ 212 (902)
T 2oaj_A 150 RLSPIVSIQWNPRD--IGTVLISY------EYVTL-TYSLVE--------NEIKQSFIYELPPFAPGGDFSEKTNEKRTP 212 (902)
T ss_dssp CCCCCCEEEEETTE--EEEEEEEC------SSCEE-EEETTT--------TEEEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred CCCCeEEEEEccCC--CCEEEEEe------CCCcE-EEECCC--------CceEEEEecccCCcCCCcccccccccccCC
Confidence 35789999999952 24566555 55669 999872 233333443 367
Q ss_pred CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeee--ecc---cc------CCCCCCCCCeEEEEEec----CC-CeEE
Q 019482 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN--LLA---KK------MPPLQDAGPQKCLSFSV----DG-SRFA 128 (340)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~--~~~---~~------~~~~~~~~~v~~~~~~~----~~-~~l~ 128 (340)
.|++++|+|+|++|++++.|+.|++||+.+++.... +.. .. ...+.+...|.+++|++ ++ .+|+
T Consensus 213 ~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~ 292 (902)
T 2oaj_A 213 KVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLI 292 (902)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEE
T ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEE
Confidence 899999999999999999999999999988765432 100 00 00012344677777743 21 2334
Q ss_pred Ec----------------------------------------------------------------------------cC
Q 019482 129 AG----------------------------------------------------------------------------GV 132 (340)
Q Consensus 129 ~~----------------------------------------------------------------------------~~ 132 (340)
+| +.
T Consensus 293 sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~ 372 (902)
T 2oaj_A 293 SHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILG 372 (902)
T ss_dssp EEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEET
T ss_pred eCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcC
Confidence 33 33
Q ss_pred CCcEEEEeCCCCceeec-------cccCcc----------------------------------ceeEEEecCCCCeEEE
Q 019482 133 DGHLRIMHWPSLRIILD-------EPKAHK----------------------------------SVLDMDFSLDSEFLAT 171 (340)
Q Consensus 133 dg~i~~~d~~~~~~~~~-------~~~~~~----------------------------------~i~~~~~~~~~~~l~~ 171 (340)
||.|++||+.++..... +..|+. .+..++|+|++++|++
T Consensus 373 dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laS 452 (902)
T 2oaj_A 373 NGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFIT 452 (902)
T ss_dssp TSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEE
T ss_pred CCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEE
Confidence 45566666654432211 111222 3344566889999999
Q ss_pred eeCCCeEEEEEccCCeeE----EEee------cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc------
Q 019482 172 TSTDGSARIWKTEDGVAW----TFLT------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN------ 235 (340)
Q Consensus 172 ~~~d~~v~iwd~~~~~~~----~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~------ 235 (340)
|+.|++|++||+.+++.. .... ..+...|.+++|+|+++. +++++.|++|++||+.+++
T Consensus 453 gs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~-----LAsgs~DgtV~lwd~~~~~~~~~~~ 527 (902)
T 2oaj_A 453 GHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLE-----LAVSIETGDVVLFKYEVNQFYSVEN 527 (902)
T ss_dssp EETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTE-----EEEEETTSCEEEEEEEECCC-----
T ss_pred ecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCe-----EEEEecCcEEEEEEecCccccCccc
Confidence 999999999999877421 1111 145568999999999997 8999999999999997652
Q ss_pred ---------------------------------------EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCc
Q 019482 236 ---------------------------------------KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM 276 (340)
Q Consensus 236 ---------------------------------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 276 (340)
++..+..|.+.|++++|+||| +||+|+.|+.|++||+++.
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~ 606 (902)
T 2oaj_A 528 RPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGP 606 (902)
T ss_dssp ----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTT
T ss_pred cCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCC
Confidence 356677899999999999999 9999999999999999887
Q ss_pred eEeec--c--c-ccccccceeeEEEe-----cCC---eEEEEEecCCcEEEEEe
Q 019482 277 EINHW--S--K-RLHLGTSIALVEFC-----PTQ---RVVLTASKEWGAMITKL 317 (340)
Q Consensus 277 ~~~~~--~--~-~~~~~~~i~~~~~~-----~~~---~~l~~~~~dg~i~iw~~ 317 (340)
..+.. + . .+| ...|++++|+ ||| ++|++|+.|++|++|++
T Consensus 607 ~~~~~~~~~~~~~gh-~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 607 AIIYMENIREISGAQ-SACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEEEEEEGGGTCSSC-CCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred eEEEEeehhHhcccc-ccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 76531 1 1 155 5789999999 885 89999999999999999
No 88
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.7e-38 Score=268.51 Aligned_cols=272 Identities=14% Similarity=0.136 Sum_probs=219.5
Q ss_pred EEEecCCCCeeEEEEcCC----CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC----CCeEE
Q 019482 57 YVFDESEGDPMTIAVNPS----GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD----GSRFA 128 (340)
Q Consensus 57 ~~~~~h~~~v~~~~~~~~----~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~ 128 (340)
....+|.+.|.+++|+|+ ...+++++.++.|++||+.+++....+.... ...|...|.+++|+|+ +++|+
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~l~ 89 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYV--DADADENFYTCAWTYDSNTSHPLLA 89 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEE--CSCTTCCEEEEEEEECTTTCCEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeecc--ccCCCCcEEEEEeccCCCCCCCEEE
Confidence 345689999999999984 4567777777799999999776554443221 1136688999999998 66999
Q ss_pred EccCCCcEEEEeCCCCceeeccccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeEEEee--cCCCCceeeEEE
Q 019482 129 AGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKIELCRF 205 (340)
Q Consensus 129 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~ 205 (340)
+++.||.|++||+.+++.+..+..|...|.+++|+| ++++|++++.|+.|++||+++++.+..+. ..+...|.+++|
T Consensus 90 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 90 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp EEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred EecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 999999999999999998888888889999999999 99999999999999999999999888873 346678999999
Q ss_pred ccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec----------------------------cCCCeeEEEECCCCC
Q 019482 206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL----------------------------LRKPASVLSISLDGK 257 (340)
Q Consensus 206 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----------------------------~~~~i~~~~~s~~~~ 257 (340)
+|++.. +++++.|+.|++||+++++....+.. |...|.+++|+ ++
T Consensus 170 ~~~~~~-----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 242 (366)
T 3k26_A 170 DLLGEK-----IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD 242 (366)
T ss_dssp CTTSSE-----EEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT
T ss_pred CCCCCE-----EEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC
Confidence 999987 78889999999999998765433332 78899999998 77
Q ss_pred EEEEeeCCCcEEEEeccCceE--------------eecccccccccceeeEEEecC--CeEEEEEecCCcEEEEEecCCC
Q 019482 258 YLAMGSKDGDICVVDVKKMEI--------------NHWSKRLHLGTSIALVEFCPT--QRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 258 ~l~~~~~dg~i~i~d~~~~~~--------------~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
++++++.|+.|++||+.+++. +..+ ..| ...|.+++|+|+ +++|++++.||.|++|++....
T Consensus 243 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 243 LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF-DYS-QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE-ECS-SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEEEecCCEEEEEeCCCccccccccccCCcchheeccc-ccc-CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence 999999999999999987643 3222 334 568999999999 9999999999999999997654
Q ss_pred CCC-CCcccccc--ccccccC
Q 019482 322 DWK-GLSLPLLH--SHSQNSV 339 (340)
Q Consensus 322 ~~~-~~~~~~~h--~~~v~~v 339 (340)
... .......| ...|.++
T Consensus 321 ~~~~~~~~~~~~~~~~~v~~~ 341 (366)
T 3k26_A 321 PHKAKCTTLTHHKCGAAIRQT 341 (366)
T ss_dssp GGGCEEEEECCTTCCSCEEEE
T ss_pred CccccceEEcccccCCceEEE
Confidence 322 12234444 4555543
No 89
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.4e-37 Score=264.92 Aligned_cols=255 Identities=12% Similarity=0.091 Sum_probs=206.3
Q ss_pred CCeeeEEEecCCCCeeEEEEcCCC-CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEE
Q 019482 52 SPLVTYVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAA 129 (340)
Q Consensus 52 ~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 129 (340)
.......+.+|...|++++|+|++ ++|++++.|+.|++||+.+.+....+.. ..|...|.+++|+| ++++|++
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~l~s 136 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG-----MGPGDAITGMKFNQFNTNQLFV 136 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC-----CSTTCBEEEEEEETTEEEEEEE
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeec-----CCcCCceeEEEeCCCCCCEEEE
Confidence 344566789999999999999999 8999999999999999987765444321 23789999999999 7899999
Q ss_pred ccCCCcEEEEeCCCCceeeccccCc---cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEc
Q 019482 130 GGVDGHLRIMHWPSLRIILDEPKAH---KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS 206 (340)
Q Consensus 130 ~~~dg~i~~~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 206 (340)
++.|+.|++||+++ .....+..+. ..|.+++|+|++++|++++.|+.|++||+ +++.+..+.. +...|.+++|+
T Consensus 137 ~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~-h~~~v~~~~~~ 213 (383)
T 3ei3_B 137 SSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKL-HKAKVTHAEFN 213 (383)
T ss_dssp EETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEEC-SSSCEEEEEEC
T ss_pred EeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEecc-CCCcEEEEEEC
Confidence 99999999999986 4444444433 67999999999999999999999999999 5677777764 45689999999
Q ss_pred cCCCcceEEEEEecCCcceEEEEECCC----CcEEeeeeccCCCeeEEEECC-CCCEEEEeeCCCcEEEEeccCceEeec
Q 019482 207 KDGTKPFLFCTVQRGDKALLAVYDIST----WNKIGHKRLLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHW 281 (340)
Q Consensus 207 ~~~~~~~~~~~~~~~~d~~i~i~d~~~----~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~ 281 (340)
|+++.. +++++.|+.|++||+++ +..+..+ .|...+.+++|+| ++++|++++.|+.|++||+++++....
T Consensus 214 ~~~~~~----l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 288 (383)
T 3ei3_B 214 PRCDWL----MATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQ 288 (383)
T ss_dssp SSCTTE----EEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSE
T ss_pred CCCCCE----EEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccc
Confidence 999832 78889999999999997 5555555 6889999999999 999999999999999999998766544
Q ss_pred ccc------cc---------cccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 282 SKR------LH---------LGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 282 ~~~------~~---------~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
+.. .| ....+..++|+|++++ +++.||.|++|++....
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~ 341 (383)
T 3ei3_B 289 IIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGG 341 (383)
T ss_dssp EEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCC
T ss_pred cccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCc
Confidence 321 11 0123344666666665 77899999999987554
No 90
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.3e-36 Score=262.41 Aligned_cols=275 Identities=15% Similarity=0.227 Sum_probs=234.2
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
+..+|++++|++ .++++|+ .++.|++|++. +......+.+|...|.+++|+ ++.+++++
T Consensus 158 h~~~v~~~~~~~-----~~l~s~~------~dg~i~vwd~~--------~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s 216 (445)
T 2ovr_B 158 HTGGVWSSQMRD-----NIIISGS------TDRTLKVWNAE--------TGECIHTLYGHTSTVRCMHLH--EKRVVSGS 216 (445)
T ss_dssp CSSCEEEEEEET-----TEEEEEE------TTSCEEEEETT--------TTEEEEEECCCSSCEEEEEEE--TTEEEEEE
T ss_pred CCCCEEEEEecC-----CEEEEEe------CCCeEEEEECC--------cCcEEEEECCCCCcEEEEEec--CCEEEEEe
Confidence 457889999974 3566555 56679999987 455667788999999999995 67899999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 162 (340)
.|+.|++||+.+++....+.. |...|.+++| +++++++++.||.|++||+++++.+..+..|...|.++.|
T Consensus 217 ~dg~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 287 (445)
T 2ovr_B 217 RDATLRVWDIETGQCLHVLMG-------HVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF 287 (445)
T ss_dssp TTSEEEEEESSSCCEEEEEEC-------CSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE
T ss_pred CCCEEEEEECCCCcEEEEEcC-------CcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE
Confidence 999999999998876655532 7789999999 7889999999999999999999988888888889999999
Q ss_pred cCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec
Q 019482 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (340)
Q Consensus 163 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 242 (340)
+++++++++.|+.|++||+++++.+..+..+ ...+.++.++ +.. +++++.|+.|++||+++++.+..+..
T Consensus 288 --~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~--~~~-----l~~~~~dg~i~vwd~~~~~~~~~~~~ 357 (445)
T 2ovr_B 288 --DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH-QSLTSGMELK--DNI-----LVSGNADSTVKIWDIKTGQCLQTLQG 357 (445)
T ss_dssp --CSSEEEEEETTSCEEEEETTTCCEEEEECCC-CSCEEEEEEE--TTE-----EEEEETTSCEEEEETTTCCEEEEECS
T ss_pred --CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC-cccEEEEEEe--CCE-----EEEEeCCCeEEEEECCCCcEEEEEcc
Confidence 7889999999999999999999998888754 4567777775 444 78889999999999999998888876
Q ss_pred ---cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc----ccccccceeeEEEecCCeEEEEEecCCc----
Q 019482 243 ---LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK----RLHLGTSIALVEFCPTQRVVLTASKEWG---- 311 (340)
Q Consensus 243 ---~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~---- 311 (340)
+...|.+++|+ +++|++++.||.|++||+.+++.+..+. ..+ ...|++++|+|++.++++++.||.
T Consensus 358 ~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~la~~~~dg~~~~~ 434 (445)
T 2ovr_B 358 PNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS-GGVVWRIRASNTKLVCAVGSRNGTEETK 434 (445)
T ss_dssp TTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGG-TCEEEEEEECSSEEEEEEECSSSSSCCE
T ss_pred CCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCC-CceEEEEEecCCEEEEEEcccCCCCccE
Confidence 77889999995 5799999999999999999998776652 233 578999999999999999999998
Q ss_pred EEEEEecCC
Q 019482 312 AMITKLTVP 320 (340)
Q Consensus 312 i~iw~~~~~ 320 (340)
+.||+++..
T Consensus 435 l~v~df~~~ 443 (445)
T 2ovr_B 435 LLVLDFDVD 443 (445)
T ss_dssp EEEEECCCC
T ss_pred EEEEECCCC
Confidence 999999754
No 91
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=9e-38 Score=258.87 Aligned_cols=246 Identities=10% Similarity=0.095 Sum_probs=195.8
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC--CCCeEEE
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVC 80 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~ 80 (340)
+..+|++++|+| ++.++++|+ .|+.|++|++... .......+.+|.+.|.+++|+| ++++|++
T Consensus 12 H~~~V~~v~~s~---~g~~lasgs------~D~~v~lwd~~~~------~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s 76 (316)
T 3bg1_A 12 HEDMIHDAQMDY---YGTRLATCS------SDRSVKIFDVRNG------GQILIADLRGHEGPVWQVAWAHPMYGNILAS 76 (316)
T ss_dssp --CCEEEEEECG---GGCEEEEEE------TTTEEEEEEEETT------EEEEEEEEECCSSCEEEEEECCGGGSSCEEE
T ss_pred ccCeEEEeeEcC---CCCEEEEEe------CCCeEEEEEecCC------CcEEEEEEcCCCccEEEEEeCCCCCCCEEEE
Confidence 467899999999 455777666 5677999998632 1224467899999999999986 4899999
Q ss_pred EecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC--CCeEEEccCCCcEEEEeCCCCce---eeccccCcc
Q 019482 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRI---ILDEPKAHK 155 (340)
Q Consensus 81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~---~~~~~~~~~ 155 (340)
++.|++|++||+.++........ ..|...|.+++|+|+ +.+|++++.|+.|++||++++.. ...+..|..
T Consensus 77 ~s~D~~v~iWd~~~~~~~~~~~~-----~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~ 151 (316)
T 3bg1_A 77 CSYDRKVIIWREENGTWEKSHEH-----AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTI 151 (316)
T ss_dssp EETTSCEEEECCSSSCCCEEEEE-----CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSS
T ss_pred EECCCEEEEEECCCCcceEEEEc-----cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccC
Confidence 99999999999987642111111 137789999999997 78999999999999999987532 344556777
Q ss_pred ceeEEEecCC-----------------CCeEEEeeCCCeEEEEEccCC---eeEEEeecCCCCceeeEEEccCC----Cc
Q 019482 156 SVLDMDFSLD-----------------SEFLATTSTDGSARIWKTEDG---VAWTFLTRNSDEKIELCRFSKDG----TK 211 (340)
Q Consensus 156 ~i~~~~~~~~-----------------~~~l~~~~~d~~v~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~----~~ 211 (340)
.+.+++|+|+ +++|++|+.|++|++||++.. +++..+. .|...|.+++|+|++ ..
T Consensus 152 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~-~h~~~V~~v~~sp~~~~~~~~ 230 (316)
T 3bg1_A 152 GCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE-AHSDWVRDVAWAPSIGLPTST 230 (316)
T ss_dssp CBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB-CCSSCEEEEECCCCSSCSCCE
T ss_pred CcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc-cCCCceEEEEecCCCCCCCce
Confidence 8999999997 468999999999999999755 3455554 455789999999986 44
Q ss_pred ceEEEEEecCCcceEEEEECCCCc----EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEecc
Q 019482 212 PFLFCTVQRGDKALLAVYDISTWN----KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK 274 (340)
Q Consensus 212 ~~~~~~~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 274 (340)
+++++.|+.|++||+++.. ....+..+...|.+++|+|++++|++++.|+.|++|+..
T Consensus 231 -----las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 231 -----IASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp -----EEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred -----EEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 7899999999999997631 123456678899999999999999999999999999975
No 92
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-38 Score=289.24 Aligned_cols=254 Identities=14% Similarity=0.133 Sum_probs=210.3
Q ss_pred EEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCce--eeeeeccccCCCCCCCCCeEEEEEecC--CCeEEEccC
Q 019482 57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA--TDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGV 132 (340)
Q Consensus 57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~ 132 (340)
..+.+|.+.|++++|+|++++|++|+.||.|++||+.+.. ....+. .|.++|.+++|+|+ +++|++|+.
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~-------~h~~~V~~l~~s~~~~~~~l~s~s~ 75 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-------GHEGPVWRVDWAHPKFGTILASCSY 75 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEEC-------CCSSCEEEEEECCTTSCSEEEEEET
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceecc-------CCcCceEEEEecCCCCCCEEEEEeC
Confidence 4578999999999999999999999999999999998443 222222 37899999999988 999999999
Q ss_pred CCcEEEEeCCCCc--eeeccccCccceeEEEecCC--CCeEEEeeCCCeEEEEEccCCee--EEEeecCCCCceeeEEEc
Q 019482 133 DGHLRIMHWPSLR--IILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFS 206 (340)
Q Consensus 133 dg~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~ 206 (340)
||.|++||+.+++ .......|...|.+++|+|+ ++++++|+.||.|++||++++.. ...+. .+...+.+++|+
T Consensus 76 Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~-~~~~~v~~l~~~ 154 (753)
T 3jro_A 76 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWA 154 (753)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE-CCSSCEEEEEEC
T ss_pred CCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee-cCCCceEEEEec
Confidence 9999999999886 56667778889999999998 99999999999999999988733 23333 456789999999
Q ss_pred c-------------CCCcceEEEEEecCCcceEEEEECCCC----cEEeeeeccCCCeeEEEECCC---CCEEEEeeCCC
Q 019482 207 K-------------DGTKPFLFCTVQRGDKALLAVYDISTW----NKIGHKRLLRKPASVLSISLD---GKYLAMGSKDG 266 (340)
Q Consensus 207 ~-------------~~~~~~~~~~~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg 266 (340)
| ++.. +++++.|+.|++||++++ .....+..|..+|.+++|+|+ ++++++++.||
T Consensus 155 p~~~~~~~~~~~~~d~~~-----l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg 229 (753)
T 3jro_A 155 PATIEEDGEHNGTKESRK-----FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 229 (753)
T ss_dssp CCC---------CGGGCC-----EEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS
T ss_pred CcccccccccccCCCCCE-----EEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC
Confidence 9 4666 788999999999999887 455667788999999999999 99999999999
Q ss_pred cEEEEeccCceEe---e-cccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCC
Q 019482 267 DICVVDVKKMEIN---H-WSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWK 324 (340)
Q Consensus 267 ~i~i~d~~~~~~~---~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 324 (340)
.|++||+.+++.. . .....| ...|++++|+|++++|++++.||.|++|++.....+.
T Consensus 230 ~I~iwd~~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~~~ 290 (753)
T 3jro_A 230 TCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 290 (753)
T ss_dssp CEEEEEESSSSSCCBCCBSSSSCC-SSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSCCB
T ss_pred EEEEecCCCCCCcceeEEeccCCC-CCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCCcc
Confidence 9999999886421 1 111224 5789999999999999999999999999998655443
No 93
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.7e-36 Score=264.60 Aligned_cols=284 Identities=13% Similarity=0.162 Sum_probs=231.2
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEc--CCCCeEEE
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVN--PSGDDFVC 80 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~~ 80 (340)
+.++|++++|+++. ++++|+ .++.|++|+++ +......+.+|...|.+++|+ +++.++++
T Consensus 161 h~~~V~~l~~~~~~----~l~s~s------~dg~i~vwd~~--------~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s 222 (464)
T 3v7d_B 161 HDGGVWALKYAHGG----ILVSGS------TDRTVRVWDIK--------KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT 222 (464)
T ss_dssp CSSCEEEEEECSTT----EEEEEE------TTSCEEEEETT--------TTEEEEEECCCSSCEEEEEEEESSSCEEEEE
T ss_pred CCcCEEEEEEcCCC----EEEEEe------CCCCEEEEECC--------CCcEEEEECCCCCccEEEEEecCCCCCEEEE
Confidence 46789999998842 566555 56779999987 455667788999999999998 57789999
Q ss_pred EecCCCEEEEEecCceeeeeeccc----------------cCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC
Q 019482 81 STTNGGCKLFEVYGGATDINLLAK----------------KMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL 144 (340)
Q Consensus 81 ~~~d~~i~iw~~~~~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 144 (340)
++.|+.|++||+.+.......... ......|...+.++ +++++++++++.||.|++||+.++
T Consensus 223 ~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~ 300 (464)
T 3v7d_B 223 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQM 300 (464)
T ss_dssp EETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTT
T ss_pred EcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCC
Confidence 999999999999876533211000 00011355667766 678899999999999999999999
Q ss_pred ceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc
Q 019482 145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA 224 (340)
Q Consensus 145 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~ 224 (340)
+.+..+..|...|.+++|+|+++++++++.|+.|++||+++++++..+.. +...+.+++|++ .. +++++.|+
T Consensus 301 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~--~~-----l~s~s~dg 372 (464)
T 3v7d_B 301 KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG-HTALVGLLRLSD--KF-----LVSAAADG 372 (464)
T ss_dssp EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECS--SE-----EEEEETTS
T ss_pred cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC-CCCcEEEEEEcC--CE-----EEEEeCCC
Confidence 99988888889999999999999999999999999999999999988875 456899999984 44 78899999
Q ss_pred eEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEE
Q 019482 225 LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL 304 (340)
Q Consensus 225 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 304 (340)
.|++||++++...... .+...+..++|+|+++++++++ ||.|++||+++++.+......| ...|.+++|+ +..+++
T Consensus 373 ~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~-~~~v~~v~~~-~~~l~~ 448 (464)
T 3v7d_B 373 SIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKD-ADQIWSVNFK-GKTLVA 448 (464)
T ss_dssp EEEEEETTTCCEEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTT-CSEEEEEEEE-TTEEEE
T ss_pred cEEEEECCCCceeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccC-CCcEEEEEec-CCEEEE
Confidence 9999999998765444 3556788899999999999998 8999999999999988655556 6799999997 456777
Q ss_pred EEecCCcEEEEEec
Q 019482 305 TASKEWGAMITKLT 318 (340)
Q Consensus 305 ~~~~dg~i~iw~~~ 318 (340)
+++.||.+.+|-++
T Consensus 449 ~~~~~g~~~i~~ld 462 (464)
T 3v7d_B 449 AVEKDGQSFLEILD 462 (464)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEeCCeEEEEEee
Confidence 77788888777664
No 94
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-37 Score=253.15 Aligned_cols=261 Identities=13% Similarity=0.130 Sum_probs=216.8
Q ss_pred CCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc
Q 019482 52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131 (340)
Q Consensus 52 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 131 (340)
.......+.+|.+.|++++| |++++|++++.||.|++||+.+......+.. |...|.+++|+|++++|++++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~ 78 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYT-------GQGFLNSVCYDSEKELLLFGG 78 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEE-------CSSCEEEEEEETTTTEEEEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeec-------CCccEEEEEECCCCCEEEEec
Confidence 34566789999999999999 9999999999999999999988776555443 678999999999999999999
Q ss_pred CCCcEEEEeCCCC---ceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEcc-
Q 019482 132 VDGHLRIMHWPSL---RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK- 207 (340)
Q Consensus 132 ~dg~i~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~- 207 (340)
.||.|++|++... +....+..|...|.++.| +++++++++.|+.|++|| .++....+.. +...+.++.|.|
T Consensus 79 ~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~-~~~~v~~~~~~~~ 153 (313)
T 3odt_A 79 KDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQA-HNASVWDAKVVSF 153 (313)
T ss_dssp TTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEEC-CSSCEEEEEEEET
T ss_pred CCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEeccc-CCCceeEEEEccC
Confidence 9999999998754 445566778889999999 577999999999999999 5666666664 456899999998
Q ss_pred CCCcceEEEEEecCCcceEEEEECCCCcEEeeeec-cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccc
Q 019482 208 DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH 286 (340)
Q Consensus 208 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 286 (340)
++.. +++++.|+.|++|| ..+....+.. +...+.+++|+|++. +++++.||.|++||+++++.+..+. .|
T Consensus 154 ~~~~-----l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~-~~ 224 (313)
T 3odt_A 154 SENK-----FLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE-GH 224 (313)
T ss_dssp TTTE-----EEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE-CC
T ss_pred CCCE-----EEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh-cC
Confidence 7775 78889999999999 4455556666 788999999999998 8999999999999999998887763 45
Q ss_pred cccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482 287 LGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV 339 (340)
Q Consensus 287 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v 339 (340)
..+|.+++|+|++ .|++++.||.|++|++.... .......|...+.++
T Consensus 225 -~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~i~~~ 272 (313)
T 3odt_A 225 -ESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGS---LKQVITLPAISIWSV 272 (313)
T ss_dssp -SSCEEEEEECTTS-CEEEEETTSEEEEECTTTCC---EEEEEECSSSCEEEE
T ss_pred -CceEEEEEEecCC-CEEEEecCCEEEEEECCCCc---eeEEEeccCceEEEE
Confidence 5799999999999 59999999999999987554 334445555555443
No 95
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.3e-36 Score=261.41 Aligned_cols=270 Identities=17% Similarity=0.238 Sum_probs=229.8
Q ss_pred eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCC
Q 019482 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (340)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~ 86 (340)
++|+++.. .++++|+ .++.|++|++. +......+.+|...|.+++|+ ++++++++.||.
T Consensus 122 ~~~~~~~g-----~~l~sg~------~dg~i~vwd~~--------~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~ 180 (445)
T 2ovr_B 122 ITCLQFCG-----NRIVSGS------DDNTLKVWSAV--------TGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRT 180 (445)
T ss_dssp EEEEEEET-----TEEEEEE------TTSCEEEEETT--------TCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSC
T ss_pred EEEEEEcC-----CEEEEEE------CCCcEEEEECC--------CCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCe
Confidence 46655542 4566665 56679999987 445567788999999999997 679999999999
Q ss_pred EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCC
Q 019482 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS 166 (340)
Q Consensus 87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 166 (340)
|++||+.+++....+. .|...|.++.|+ ++.+++++.||.|++||+++++....+..|...|.++.| ++
T Consensus 181 i~vwd~~~~~~~~~~~-------~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~ 249 (445)
T 2ovr_B 181 LKVWNAETGECIHTLY-------GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG 249 (445)
T ss_dssp EEEEETTTTEEEEEEC-------CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS
T ss_pred EEEEECCcCcEEEEEC-------CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC
Confidence 9999999887766553 277899999995 568999999999999999999988888888889999999 68
Q ss_pred CeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCC
Q 019482 167 EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKP 246 (340)
Q Consensus 167 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 246 (340)
+++++++.|+.|++||+++++++..+.. +...+.+++| ++.. +++++.|+.|++||+++++.+..+..+...
T Consensus 250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~--~~~~-----l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 321 (445)
T 2ovr_B 250 RRVVSGAYDFMVKVWDPETETCLHTLQG-HTNRVYSLQF--DGIH-----VVSGSLDTSIRVWDVETGNCIHTLTGHQSL 321 (445)
T ss_dssp SCEEEEETTSCEEEEEGGGTEEEEEECC-CSSCEEEEEE--CSSE-----EEEEETTSCEEEEETTTCCEEEEECCCCSC
T ss_pred CEEEEEcCCCEEEEEECCCCcEeEEecC-CCCceEEEEE--CCCE-----EEEEeCCCeEEEEECCCCCEEEEEcCCccc
Confidence 8999999999999999999999888874 4567999999 6665 788899999999999999999999999888
Q ss_pred eeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccc--cccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 247 ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR--LHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 247 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
+.++.+ +++++++++.||.|++||+++++.+..+.. .| ..+|.+++|+ +++|++++.||.|++|++....
T Consensus 322 v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~ 393 (445)
T 2ovr_B 322 TSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH-QSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGE 393 (445)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSC-SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred EEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCC-CCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCc
Confidence 888776 567999999999999999999888776642 24 5789999995 5799999999999999997655
No 96
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=269.57 Aligned_cols=245 Identities=12% Similarity=0.076 Sum_probs=196.4
Q ss_pred CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCcee-----------eeeeccccCCCCCCC------------CCeEEE
Q 019482 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT-----------DINLLAKKMPPLQDA------------GPQKCL 118 (340)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~-----------~~~~~~~~~~~~~~~------------~~v~~~ 118 (340)
|.+.|++++|+|+|++||+|+.||.|+||++.+.+. ...+. .|. ..|.++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~~~~~~~~~~~~~V~~l 99 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ-------SHEPEFDYLKSLEIEEKINKI 99 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE-------CCCCEEEGGGTEEECCCCCEE
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc-------cccccccccccccccCceEEE
Confidence 578899999999999999999999999999987652 22222 254 789999
Q ss_pred EEecCC--CeEEEccCCCcEEEEeCCCCceee---------------------------------------c-cccCccc
Q 019482 119 SFSVDG--SRFAAGGVDGHLRIMHWPSLRIIL---------------------------------------D-EPKAHKS 156 (340)
Q Consensus 119 ~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~---------------------------------------~-~~~~~~~ 156 (340)
+|+|++ .+|++++.|+.|++||+.+++... . ...|...
T Consensus 100 ~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 179 (447)
T 3dw8_B 100 RWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH 179 (447)
T ss_dssp EECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC
T ss_pred EEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc
Confidence 999998 789999999999999987644310 1 2457779
Q ss_pred eeEEEecCCCCeEEEeeCCCeEEEEEccC-CeeEEEe------ecCCCCceeeEEEccCC-CcceEEEEEecCCcceEEE
Q 019482 157 VLDMDFSLDSEFLATTSTDGSARIWKTED-GVAWTFL------TRNSDEKIELCRFSKDG-TKPFLFCTVQRGDKALLAV 228 (340)
Q Consensus 157 i~~~~~~~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~------~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~d~~i~i 228 (340)
|.+++|+|++++|++| .|+.|++||+++ ++.+..+ ...+...|.+++|+|++ .. +++++.|+.|++
T Consensus 180 v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-----l~s~~~dg~i~i 253 (447)
T 3dw8_B 180 INSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNT-----FVYSSSKGTIRL 253 (447)
T ss_dssp CCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTE-----EEEEETTSCEEE
T ss_pred eEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcE-----EEEEeCCCeEEE
Confidence 9999999999999998 799999999984 4444432 23456789999999998 65 788999999999
Q ss_pred EECCCCcE----EeeeeccCC------------CeeEEEECCCCCEEEEeeCCCcEEEEeccC-ceEeecccccccc---
Q 019482 229 YDISTWNK----IGHKRLLRK------------PASVLSISLDGKYLAMGSKDGDICVVDVKK-MEINHWSKRLHLG--- 288 (340)
Q Consensus 229 ~d~~~~~~----~~~~~~~~~------------~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~--- 288 (340)
||+++++. +..+..+.. .|.+++|+|++++|++++. +.|++||+++ ++++..+. .|..
T Consensus 254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~-~~~~~~~ 331 (447)
T 3dw8_B 254 CDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ-VHEYLRS 331 (447)
T ss_dssp EETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE-SCGGGTT
T ss_pred EECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee-ccccccc
Confidence 99999886 566777765 8999999999999999998 9999999987 66665543 3311
Q ss_pred --------c---ceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 289 --------T---SIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 289 --------~---~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
. .+..++|+|++++|++++.||.|++|++....
T Consensus 332 ~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 332 KLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp THHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred cccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 0 13349999999999999999999999987543
No 97
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-36 Score=254.71 Aligned_cols=247 Identities=11% Similarity=0.115 Sum_probs=200.8
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCC--CCeEEE
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVC 80 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~ 80 (340)
+..+|++++|+|+ ..++++|+ .++.|++|+++.. .......+.+|...|++++|+|+ +++|++
T Consensus 10 h~~~v~~~~~s~~---~~~l~~~~------~dg~i~iw~~~~~------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 74 (379)
T 3jrp_A 10 HNELIHDAVLDYY---GKRLATCS------SDKTIKIFEVEGE------THKLIDTLTGHEGPVWRVDWAHPKFGTILAS 74 (379)
T ss_dssp CCCCEEEEEECSS---SSEEEEEE------TTSCEEEEEEETT------EEEEEEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred CcccEEEEEEcCC---CCEEEEEE------CCCcEEEEecCCC------cceeeeEecCCCCcEEEEEeCCCCCCCEEEE
Confidence 4678999999994 45677665 5666999999632 23445678899999999999987 899999
Q ss_pred EecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC--CCeEEEccCCCcEEEEeCCCCc--eeeccccCccc
Q 019482 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLR--IILDEPKAHKS 156 (340)
Q Consensus 81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~ 156 (340)
++.|+.|++||+.+++....... ..|...|.+++|+|+ +++|++++.|+.|++||+.++. ....+..|...
T Consensus 75 ~~~dg~v~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 149 (379)
T 3jrp_A 75 CSYDGKVLIWKEENGRWSQIAVH-----AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 149 (379)
T ss_dssp EETTSCEEEEEEETTEEEEEEEE-----CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTC
T ss_pred eccCCEEEEEEcCCCceeEeeee-----cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCc
Confidence 99999999999998762222111 127789999999999 9999999999999999998773 33445567789
Q ss_pred eeEEEecC-------------CCCeEEEeeCCCeEEEEEccCCee----EEEeecCCCCceeeEEEccC---CCcceEEE
Q 019482 157 VLDMDFSL-------------DSEFLATTSTDGSARIWKTEDGVA----WTFLTRNSDEKIELCRFSKD---GTKPFLFC 216 (340)
Q Consensus 157 i~~~~~~~-------------~~~~l~~~~~d~~v~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~---~~~~~~~~ 216 (340)
|.+++|+| ++++|++++.|+.|++||+++++. ...+. .+...|.+++|+|+ +..
T Consensus 150 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~----- 223 (379)
T 3jrp_A 150 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSY----- 223 (379)
T ss_dssp EEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEE-----
T ss_pred eEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe-cccCcEeEEEECCCCCCCCe-----
Confidence 99999999 699999999999999999987653 23343 45678999999999 665
Q ss_pred EEecCCcceEEEEECCCCc-----EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC
Q 019482 217 TVQRGDKALLAVYDISTWN-----KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (340)
Q Consensus 217 ~~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 275 (340)
+++++.|+.|++||++++. .+.....+...+.+++|+|++++|++++.||.|++|++..
T Consensus 224 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 224 LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred EEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 7888999999999999864 2222233678899999999999999999999999999873
No 98
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=9.9e-38 Score=261.58 Aligned_cols=262 Identities=14% Similarity=0.115 Sum_probs=213.1
Q ss_pred EecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCC-eEEEccCCCcEE
Q 019482 59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLR 137 (340)
Q Consensus 59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~ 137 (340)
..+|.+.|.+++|+|++++|++++.|+.|++|++.+.......... ..|...|.+++|+|+++ +|++++.||.|+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS----LRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE----EECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee----eecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 3479999999999999999999999999999999877611111110 13778999999999999 999999999999
Q ss_pred EEeC-CCCceeecccc--CccceeEEEecCCCCeEEEeeCCCeEEEEEccC---------CeeEEEeecCCCCceeeEEE
Q 019482 138 IMHW-PSLRIILDEPK--AHKSVLDMDFSLDSEFLATTSTDGSARIWKTED---------GVAWTFLTRNSDEKIELCRF 205 (340)
Q Consensus 138 ~~d~-~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~---------~~~~~~~~~~~~~~v~~~~~ 205 (340)
+||+ .+++. ..+.. |...|.+++|+| +++|++++.|+.|++||+++ ++++..+. +...+.+++|
T Consensus 83 ~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~ 158 (342)
T 1yfq_A 83 KVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFTMDT 158 (342)
T ss_dssp EECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCEEEEEE
T ss_pred EEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--eCCceEEEEe
Confidence 9999 77655 55666 888999999999 99999999999999999987 66666554 5578999999
Q ss_pred ccCCCcceEEEEEecCCcceEEEEECCC-CcE--EeeeeccCCCeeEEEECC-CCCEEEEeeCCCcEEEEeccCc-----
Q 019482 206 SKDGTKPFLFCTVQRGDKALLAVYDIST-WNK--IGHKRLLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKM----- 276 (340)
Q Consensus 206 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~--~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~----- 276 (340)
+|++ +++++.++.|++||+++ +.. ......+...+.+++|+| +++++++++.||.|++|+++..
T Consensus 159 ~~~~-------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 159 NSSR-------LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp CSSE-------EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred cCCc-------EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence 9886 46778899999999998 543 334456678899999999 9999999999999999999876
Q ss_pred -eEeeccccccc--------ccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCcccccc-ccccccC
Q 019482 277 -EINHWSKRLHL--------GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLH-SHSQNSV 339 (340)
Q Consensus 277 -~~~~~~~~~~~--------~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h-~~~v~~v 339 (340)
+....+ ..|. ...|.+++|+|++++|++++.||.|++|++.... .......| ...|.++
T Consensus 232 ~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~h~~~v~~~ 300 (342)
T 1yfq_A 232 SSKRFAF-RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK---KIKNFAKFNEDSVVKI 300 (342)
T ss_dssp CTTCEEE-ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE---EEEECCCCSSSEEEEE
T ss_pred cccceee-ecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh---HhhhhhcccCCCceEe
Confidence 444333 2331 2389999999999999999999999999996543 34445555 7766654
No 99
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=9.6e-38 Score=270.15 Aligned_cols=270 Identities=12% Similarity=0.078 Sum_probs=204.7
Q ss_pred eEEEecCCCCeeEEEEcC-CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCC
Q 019482 56 TYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVD 133 (340)
Q Consensus 56 ~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d 133 (340)
.....+|...|++++|+| ++++||+|+.||.|+|||+.+.+...... ...|.+.|.+++|+| ++++|++++.|
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~-----~~gH~~~V~~l~f~p~~~~~l~s~s~D 186 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK-----GIGAGGSITGLKFNPLNTNQFYASSME 186 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC-----CCSSSCCCCEEEECSSCTTEEEEECSS
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE-----ccCCCCCEEEEEEeCCCCCEEEEEeCC
Confidence 345678999999999999 56789999999999999998765433221 124889999999998 68899999999
Q ss_pred CcEEEEeCCCCceeeccccC--ccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCc
Q 019482 134 GHLRIMHWPSLRIILDEPKA--HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (340)
Q Consensus 134 g~i~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (340)
|+|++||++++........+ ...+.+++|+|++++|++|+.||.|++||++. +.+..+.. |...|.+++|+|++..
T Consensus 187 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~-h~~~v~~v~~~p~~~~ 264 (435)
T 4e54_B 187 GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRM-HKKKVTHVALNPCCDW 264 (435)
T ss_dssp SCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBC-CSSCEEEEEECTTCSS
T ss_pred CEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEec-ccceEEeeeecCCCce
Confidence 99999999875443222222 23578999999999999999999999999864 55555654 5568999999999886
Q ss_pred ceEEEEEecCCcceEEEEECCCCcEEe---eeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccc-
Q 019482 212 PFLFCTVQRGDKALLAVYDISTWNKIG---HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL- 287 (340)
Q Consensus 212 ~~~~~~~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~- 287 (340)
+ +++++.|+.|++||+++.+... ....|...|++++|+|+|++|++++.||.|++||+.+++....+. .|.
T Consensus 265 ~----~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~-~~~~ 339 (435)
T 4e54_B 265 F----LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI-PHPH 339 (435)
T ss_dssp E----EEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC-CCCC
T ss_pred E----EEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe-cccc
Confidence 3 5788899999999998876433 335678899999999999999999999999999999877654432 111
Q ss_pred ----ccceeeEEEecCCeEEEEEe------------cCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482 288 ----GTSIALVEFCPTQRVVLTAS------------KEWGAMITKLTVPADWKGLSLPLLHSHSQNSV 339 (340)
Q Consensus 288 ----~~~i~~~~~~~~~~~l~~~~------------~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v 339 (340)
...+..+.|+|++.++++++ .++.|++|+...... ...+...|...|.++
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~--~~~l~~~~~~~v~s~ 405 (435)
T 4e54_B 340 RHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM--MCQLYDPESSGISSL 405 (435)
T ss_dssp CCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE--EEEECCSSCCCCCCE
T ss_pred cccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE--EEEEeCCCCCcEEEE
Confidence 11344567788777776664 235799999865432 122344566666543
No 100
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=8.3e-37 Score=260.59 Aligned_cols=298 Identities=12% Similarity=0.074 Sum_probs=201.9
Q ss_pred CceeEEeeeeecC-CCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccC-CeeeEEEecCCCCeeEEEE----------
Q 019482 4 GGTVTCGSWIKRP-ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTS-PLVTYVFDESEGDPMTIAV---------- 71 (340)
Q Consensus 4 ~~~v~~~~w~~~~-~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~---------- 71 (340)
....+++.|.... ....+++.| .++.|.+|.+.......... .......-.|...+..+.|
T Consensus 15 ~~~p~~~~w~~~~~~~~~l~a~g-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (393)
T 4gq1_A 15 NVRPYTTTWCSQSPSCSNLLAIG-------HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENL 87 (393)
T ss_dssp TCCEEEEEECTTSGGGTTEEEEE-------ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-
T ss_pred CCCCeEEEEeCCCCCCCCEEEEE-------CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccc
Confidence 4556788896432 234677744 45668899876443222111 1111111123333444443
Q ss_pred ----------cCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec--------CCCeEEEccCC
Q 019482 72 ----------NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--------DGSRFAAGGVD 133 (340)
Q Consensus 72 ----------~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~d 133 (340)
.+++.+|++++.|++|+|||...++....... .....|.+.|.+++|+| |+++|++++.|
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~--~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVL--GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEE--CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeee--cccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 44566899999999999999998765433221 11235889999999998 78999999999
Q ss_pred CcEEEEeCCCCceeeccccCccceeEEEecCCC-CeEEEeeCCCeEEEEEccCCeeEEEee-------------------
Q 019482 134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLT------------------- 193 (340)
Q Consensus 134 g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~------------------- 193 (340)
++|++||+.++........|+..+.+++|+|++ ++|++++.|++|++||+++++......
T Consensus 166 ~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 166 CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 999999999888888888899999999999977 479999999999999998876543321
Q ss_pred -----cCCCCceeeEEEc-cCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEE-----------------
Q 019482 194 -----RNSDEKIELCRFS-KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVL----------------- 250 (340)
Q Consensus 194 -----~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~----------------- 250 (340)
..+...+.++.|+ |+++. +++++.|+.+++||+..++....+..+...+..+
T Consensus 246 ~~~~~~~~~~~v~~v~~~~~dg~~-----l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIGSDGSG-----ILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLG 320 (393)
T ss_dssp ------CCSSSCSEEEEETTTTCE-----EEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSC
T ss_pred eeeecccccccceeeeeecCCCCE-----EEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCccee
Confidence 1234567888887 78887 7889999999999998876655554443333222
Q ss_pred -EECC--CCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 251 -SISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 251 -~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
.++| ++.++++|+.||.|++||+.+++...... .| ..+|.+++|+|||++||+++.|| +.+|++.
T Consensus 321 ~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~-~~-~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 321 ACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPI-QL-GMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEE-EC-SSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEec-CC-CCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 3333 34467788899999999999988766553 44 46999999999999999998765 6666664
No 101
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-36 Score=260.73 Aligned_cols=267 Identities=12% Similarity=0.063 Sum_probs=217.0
Q ss_pred CeeeEEEecCCCCee--EEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEc
Q 019482 53 PLVTYVFDESEGDPM--TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG 130 (340)
Q Consensus 53 ~~~~~~~~~h~~~v~--~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 130 (340)
+.......+|...+. +++|+ +..+++++.|+.|++||+.+++....... .|...|.+++|+|++++|+++
T Consensus 81 p~~~~~~~~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~------~~~~~v~~v~~s~~~~~l~~~ 152 (401)
T 4aez_A 81 PERVLDAPGIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALAET------DESTYVASVKWSHDGSFLSVG 152 (401)
T ss_dssp CSEEEECTTCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEEC------CTTCCEEEEEECTTSSEEEEE
T ss_pred cceeeeCCCCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEeeec------CCCCCEEEEEECCCCCEEEEE
Confidence 334444557776644 45555 46688899999999999998876554432 267899999999999999999
Q ss_pred cCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccC-CeeEEEeecCCCCceeeEEEccCC
Q 019482 131 GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDG 209 (340)
Q Consensus 131 ~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~ 209 (340)
+.||.|++||+.+++.+..+..|...|.+++|+ ++++++++.|+.|++||++. ...+..+. .+...|.+++|+|++
T Consensus 153 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~ 229 (401)
T 4aez_A 153 LGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQ-GHSSEVCGLAWRSDG 229 (401)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTTS
T ss_pred CCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEc-CCCCCeeEEEEcCCC
Confidence 999999999999999988888888999999995 67999999999999999994 55555555 456789999999999
Q ss_pred CcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCC-CEEEEee--CCCcEEEEeccCceEeecccccc
Q 019482 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG-KYLAMGS--KDGDICVVDVKKMEINHWSKRLH 286 (340)
Q Consensus 210 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~ 286 (340)
.. +++++.|+.|++||+++++.+..+..+...+.+++|+|++ .++++++ .|+.|++||+.+++.+..+. +
T Consensus 230 ~~-----l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~--~ 302 (401)
T 4aez_A 230 LQ-----LASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD--A 302 (401)
T ss_dssp SE-----EEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE--C
T ss_pred CE-----EEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe--C
Confidence 87 7889999999999999999988888999999999999976 4555554 79999999999998887663 3
Q ss_pred cccceeeEEEecCCeEEEE--EecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482 287 LGTSIALVEFCPTQRVVLT--ASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV 339 (340)
Q Consensus 287 ~~~~i~~~~~~~~~~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v 339 (340)
...|.+++|+|++++|++ |+.||.|++|++...... .......|...|.++
T Consensus 303 -~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~-~~~~~~~h~~~v~~~ 355 (401)
T 4aez_A 303 -GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT-KQVDIPAHDTRVLYS 355 (401)
T ss_dssp -SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE-EEEEEECCSSCCCEE
T ss_pred -CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce-eEEEecCCCCCEEEE
Confidence 468999999999999999 448999999999764321 122234566666554
No 102
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=4.6e-36 Score=251.66 Aligned_cols=253 Identities=14% Similarity=0.109 Sum_probs=206.6
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC--CCCeEEE
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVC 80 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~ 80 (340)
+..+|+|++|+|+ ..++++|+ .++.|++|++..... .......+.+|...|.+++|+| ++++|++
T Consensus 10 H~~~v~~~~~~~~---~~~l~~~~------~dg~i~iw~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s 76 (351)
T 3f3f_A 10 HDDLVHDVVYDFY---GRHVATCS------SDQHIKVFKLDKDTS----NWELSDSWRAHDSSIVAIDWASPEYGRIIAS 76 (351)
T ss_dssp CSSCEEEEEECSS---SSEEEEEE------TTSEEEEEEECSSSC----CEEEEEEEECCSSCEEEEEECCGGGCSEEEE
T ss_pred cccceeEEEEcCC---CCEEEEee------CCCeEEEEECCCCCC----cceecceeccCCCcEEEEEEcCCCCCCEEEE
Confidence 5688999999994 45677665 566799999974332 2234567889999999999999 6999999
Q ss_pred EecCCCEEEEEecCcee---------eeeeccccCCCCCCCCCeEEEEEecC--CCeEEEccCCCcEEEEeCCCCceeec
Q 019482 81 STTNGGCKLFEVYGGAT---------DINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRIILD 149 (340)
Q Consensus 81 ~~~d~~i~iw~~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~ 149 (340)
++.|+.|++||+..+.. ...+. .|...|.+++|+|+ +++|++++.||.|++||+++++.+..
T Consensus 77 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 149 (351)
T 3f3f_A 77 ASYDKTVKLWEEDPDQEECSGRRWNKLCTLN-------DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS 149 (351)
T ss_dssp EETTSCEEEEEECTTSCTTSSCSEEEEEEEC-------CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTC
T ss_pred EcCCCeEEEEecCCCcccccccCcceeeeec-------ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcc
Confidence 99999999999987632 22221 37789999999999 99999999999999999988765443
Q ss_pred cc-------------cCccceeEEEecCC---CCeEEEeeCCCeEEEEEccCCee--EEEeecCCCCceeeEEEccCC--
Q 019482 150 EP-------------KAHKSVLDMDFSLD---SEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDG-- 209 (340)
Q Consensus 150 ~~-------------~~~~~i~~~~~~~~---~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~-- 209 (340)
+. .+...+.+++|+|+ +.++++++.|+.+.+|+...++. +..+. .+...|.+++|+|++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~p~~~~ 228 (351)
T 3f3f_A 150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP-GHKSLIRSISWAPSIGR 228 (351)
T ss_dssp CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC-CCCSCEEEEEECCCSSC
T ss_pred ccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC-CCCcceeEEEECCCCCC
Confidence 32 45568999999997 89999999999998888877765 44444 456789999999998
Q ss_pred --CcceEEEEEecCCcceEEEEECCCC----------------------------------------------cEEeeee
Q 019482 210 --TKPFLFCTVQRGDKALLAVYDISTW----------------------------------------------NKIGHKR 241 (340)
Q Consensus 210 --~~~~~~~~~~~~~d~~i~i~d~~~~----------------------------------------------~~~~~~~ 241 (340)
.. +++++.|+.|++||++.+ +.+..+.
T Consensus 229 ~~~~-----l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (351)
T 3f3f_A 229 WYQL-----IATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD 303 (351)
T ss_dssp SSEE-----EEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEEC
T ss_pred cceE-----EEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe
Confidence 44 788999999999999874 4566677
Q ss_pred ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeec
Q 019482 242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW 281 (340)
Q Consensus 242 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 281 (340)
.|...|++++|+|++++|++++.||.|++||+.+++....
T Consensus 304 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 304 DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred cccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhh
Confidence 8889999999999999999999999999999998765443
No 103
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-38 Score=273.89 Aligned_cols=245 Identities=11% Similarity=0.010 Sum_probs=191.9
Q ss_pred CCCCeeEEEEcCCC---------CeEEE-------------------EecCCCEEEEEecCceeeeeeccccCCCCCCCC
Q 019482 62 SEGDPMTIAVNPSG---------DDFVC-------------------STTNGGCKLFEVYGGATDINLLAKKMPPLQDAG 113 (340)
Q Consensus 62 h~~~v~~~~~~~~~---------~~l~~-------------------~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 113 (340)
+.+.|.+++|+|++ ++||+ ++.|++|+||++.+++........ ...|.+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~---l~~~~~ 208 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQT---IVHSFG 208 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEE---EEECCC
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEE---EEecCC
Confidence 56788888888876 56665 456788999999876532111000 002567
Q ss_pred CeEEEEEecC------CCeEEEccCCCcEEEEeCCCCcee-----------eccccCccceeEEEecCCCCeEEEeeCCC
Q 019482 114 PQKCLSFSVD------GSRFAAGGVDGHLRIMHWPSLRII-----------LDEPKAHKSVLDMDFSLDSEFLATTSTDG 176 (340)
Q Consensus 114 ~v~~~~~~~~------~~~l~~~~~dg~i~~~d~~~~~~~-----------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 176 (340)
.|.+++|+|+ +.+|++++.||+|++||+.+++.. ..+..|...|.+++|+|++ .|++|+.||
T Consensus 209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~Dg 287 (524)
T 2j04_B 209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNG 287 (524)
T ss_dssp SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTS
T ss_pred cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCC
Confidence 8999999997 579999999999999999866421 2455677799999999864 899999999
Q ss_pred eEEEEEccCCee-EEEeecCCCCceeeE--EEccCC-CcceEEEEEecCCcceEEEEECCCCcEEeeeeccC--CCeeEE
Q 019482 177 SARIWKTEDGVA-WTFLTRNSDEKIELC--RFSKDG-TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR--KPASVL 250 (340)
Q Consensus 177 ~v~iwd~~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i~~~ 250 (340)
+|++||+++++. ...+. .|...|.++ .|+|++ .. +++++.|++|++||+++++.+..+..+. ..+.++
T Consensus 288 tV~lWD~~~~~~~~~~~~-~H~~~V~sv~~~~s~~g~~~-----laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v 361 (524)
T 2j04_B 288 FVAEFDLTDPEVPSFYDQ-VHDSYILSVSTAYSDFEDTV-----VSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPV 361 (524)
T ss_dssp EEEEEETTBCSSCSEEEE-CSSSCEEEEEEECCTTSCCE-----EEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCE
T ss_pred EEEEEECCCCCCceEEee-cccccEEEEEEEcCCCCCeE-----EEEeccCCeEEEEECCCCCcccccccccccCcccce
Confidence 999999987643 33444 456789999 578887 54 7899999999999999887766666554 357899
Q ss_pred EECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 251 SISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 251 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
+|+|+++.+++++.|+.|++||++++..+..+. +| ...|++++|+|++++|++|+.||+|++|++.
T Consensus 362 ~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~-gH-~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 362 VYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV-SR-ETTITAIGVSRLHPMVLAGSADGSLIITNAA 427 (524)
T ss_dssp EEETTTTEEEEECSSSEEEEEETTCTTCCEEEE-EC-SSCEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred EeCCCcCeEEEeCCCCcEEEEECcccccceeee-cC-CCceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence 999999999999999999999999987766553 56 6799999999999999999999999999974
No 104
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.3e-36 Score=259.04 Aligned_cols=248 Identities=16% Similarity=0.157 Sum_probs=204.2
Q ss_pred CeeEEEEcCCCCeEE-EEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCC
Q 019482 65 DPMTIAVNPSGDDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWP 142 (340)
Q Consensus 65 ~v~~~~~~~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~ 142 (340)
....++++|+...++ +++.||.|+||++.......... .....|.+.|.+++|+| ++++|++|+.||.|++||+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~---~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNV---PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP 112 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTC---CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCC---ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence 455688988776444 57889999999996653321111 11124889999999999 99999999999999999999
Q ss_pred CC-------ceeeccccCccceeEEEecCCC-CeEEEeeCCCeEEEEEccCCeeEEEee-cCCCCceeeEEEccCCCcce
Q 019482 143 SL-------RIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLT-RNSDEKIELCRFSKDGTKPF 213 (340)
Q Consensus 143 ~~-------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~ 213 (340)
++ +.+..+.+|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+. ..+...|.+++|+|++..
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-- 190 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL-- 190 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC--
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE--
Confidence 87 4566677888899999999998 699999999999999999999988884 346678999999999997
Q ss_pred EEEEEecCCcceEEEEECCCCcEEeee-eccCCC-eeEEEECCCCCEEEEe---eCCCcEEEEeccCceE-eeccccccc
Q 019482 214 LFCTVQRGDKALLAVYDISTWNKIGHK-RLLRKP-ASVLSISLDGKYLAMG---SKDGDICVVDVKKMEI-NHWSKRLHL 287 (340)
Q Consensus 214 ~~~~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~-i~~~~~s~~~~~l~~~---~~dg~i~i~d~~~~~~-~~~~~~~~~ 287 (340)
+++++.|+.|++||+++++.+..+ ..|... +.++.|+|++++|++| +.|+.|++||+++++. .......+
T Consensus 191 ---l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~- 266 (402)
T 2aq5_A 191 ---ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDT- 266 (402)
T ss_dssp ---EEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCC-
T ss_pred ---EEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccC-
Confidence 788899999999999999988887 667655 8999999999999999 7899999999988664 22222233
Q ss_pred ccceeeEEEecCCeEEE-EEecCCcEEEEEecCCC
Q 019482 288 GTSIALVEFCPTQRVVL-TASKEWGAMITKLTVPA 321 (340)
Q Consensus 288 ~~~i~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~ 321 (340)
...+..++|+|++++|+ +++.||.|++|++....
T Consensus 267 ~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 267 SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 56899999999999886 45579999999997655
No 105
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-36 Score=259.99 Aligned_cols=262 Identities=9% Similarity=0.026 Sum_probs=204.5
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
-..-|.+++|+| ++.++|+++ .|++|+ +. .. + ..+++|...|.+++|+|+|
T Consensus 14 ~~~~v~sv~~Sp---DG~~iASas------~D~TV~--d~--~~------~---~~l~gh~~~v~~V~FsPdg------- 64 (588)
T 2j04_A 14 FEDWKNNLTWAR---DGTLYLTTF------PDISIG--QP--KY------A---KDINCNSKNLFHVKEFPLE------- 64 (588)
T ss_dssp CSSSSCCEEECT---TSCEEEECS------SSEEEE--EE--CC------C---SCCSSBGGGTEEEEEECCC-------
T ss_pred hhccEEEEEECC---CCCEEEEEc------CCceee--cc--cc------c---ceecCCCccEEEEEECCCC-------
Confidence 356689999999 667888776 455577 31 11 1 1236899999999999999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCcc-----ce
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-----SV 157 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-----~i 157 (340)
.++.+.+|+.+... .+ ...+...|.+++|||+|++||+++.||.|++||.++ .+..+. |+. .+
T Consensus 65 ~~~~~~~~~~~~~~---~~------~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv 132 (588)
T 2j04_A 65 FENKLDFELAQQNG---LL------NSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTY 132 (588)
T ss_dssp CCCTTTTSCCCSSC---SS------TTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCE
T ss_pred CcceEEEEeCCCce---Ee------ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccE
Confidence 45555555543221 11 113568899999999999999999999999999544 444444 443 59
Q ss_pred eEEEecCCCCeEEEeeCCCeEEEEEccCCee-------EEEee---cCCCCceeeEEEccCCCcceEEEEEecCCcceEE
Q 019482 158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVA-------WTFLT---RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227 (340)
Q Consensus 158 ~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-------~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~ 227 (340)
.+++|+|||++|++|+.||+|++||++++.. +.++. ..|...|.+++|+|+| . ++++.|+.++
T Consensus 133 ~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-L------aass~D~tVr 205 (588)
T 2j04_A 133 HCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-L------VAALSNNSVF 205 (588)
T ss_dssp EEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-E------EEEETTCCEE
T ss_pred EEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-E------EEEeCCCeEE
Confidence 9999999999999999999999999998752 45553 3455789999999998 3 5567799999
Q ss_pred EEECCCCcE---Eeee-eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEE--ecCCe
Q 019482 228 VYDISTWNK---IGHK-RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF--CPTQR 301 (340)
Q Consensus 228 i~d~~~~~~---~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~ 301 (340)
+||+..++. ...+ ..|...|.+++|+ |+.|++++ ++.|++||+.+++..... .+| ...+.+++| +||+.
T Consensus 206 lWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~-~gh-~~~V~~va~~~s~d~~ 280 (588)
T 2j04_A 206 SMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK-TGS-LENFHIIPLNHEKEST 280 (588)
T ss_dssp EECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE-CSC-CSCCCEEEETTCSSCE
T ss_pred EEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE-cCC-CceEEEEEeeeCCCCC
Confidence 999988773 2345 3677889999999 68999987 699999999988874433 256 679999999 99999
Q ss_pred EEEEEecCCcEEEEEec
Q 019482 302 VVLTASKEWGAMITKLT 318 (340)
Q Consensus 302 ~l~~~~~dg~i~iw~~~ 318 (340)
.|++++.||. ++|..+
T Consensus 281 ~La~a~edG~-klw~~d 296 (588)
T 2j04_A 281 ILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEEECSSCEE-EEEESS
T ss_pred EEEEEcCCCC-EEEeec
Confidence 9999999999 999975
No 106
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.7e-35 Score=249.92 Aligned_cols=250 Identities=14% Similarity=0.115 Sum_probs=190.8
Q ss_pred eeEEeeeeecCCCccEEEEcCCCC-----cccCCCceEEEEeCCCCCCcccCCe-eeEEEecCCCCeeEEEEcCCCCeEE
Q 019482 6 TVTCGSWIKRPENVNLVVLGKSSR-----ASSSPSVLEIFSFDPKTTSVYTSPL-VTYVFDESEGDPMTIAVNPSGDDFV 79 (340)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~-----~~~~~~~i~i~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~ 79 (340)
.|.|++|.+ .+++.|.... .+..++.+++|.++........... .......+...+.+++|+|||++++
T Consensus 75 ~v~s~~~~~-----~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la 149 (365)
T 4h5i_A 75 SPTAIDASK-----GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAA 149 (365)
T ss_dssp CCCEEEEET-----TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEE
T ss_pred ceEEEEeCC-----CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEE
Confidence 455666554 3455554433 2446788999998755433211000 0111233456689999999999987
Q ss_pred EE--ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeec--cccCcc
Q 019482 80 CS--TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD--EPKAHK 155 (340)
Q Consensus 80 ~~--~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~--~~~~~~ 155 (340)
++ +.|++|+|||+.+.+....+ .|...|.+++|+|||++|++++.+ .+.+|+..+++.... ...|..
T Consensus 150 ~as~~~d~~i~iwd~~~~~~~~~~--------~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~ 220 (365)
T 4h5i_A 150 IASSKVPAIMRIIDPSDLTEKFEI--------ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNW 220 (365)
T ss_dssp EEESCSSCEEEEEETTTTEEEEEE--------ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTE
T ss_pred EEECCCCCEEEEeECCCCcEEEEe--------CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCC
Confidence 54 46899999999988876554 256789999999999999999855 566777676665432 334566
Q ss_pred ceeEEEecCCCCeEEEeeCCC----eEEEEEccCCeeE----EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEE
Q 019482 156 SVLDMDFSLDSEFLATTSTDG----SARIWKTEDGVAW----TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227 (340)
Q Consensus 156 ~i~~~~~~~~~~~l~~~~~d~----~v~iwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~ 227 (340)
.|.+++|+|+++++++++.|+ .+++|++...... ..+. .+...|++++|+|+|++ +++++.|+.|+
T Consensus 221 ~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~V~~~~~Spdg~~-----lasgs~D~~V~ 294 (365)
T 4h5i_A 221 SLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVT-NRFKGITSMDVDMKGEL-----AVLASNDNSIA 294 (365)
T ss_dssp EEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEE-SSCSCEEEEEECTTSCE-----EEEEETTSCEE
T ss_pred CEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeec-CCCCCeEeEEECCCCCc-----eEEEcCCCEEE
Confidence 899999999999999999887 6889998876542 2333 45567999999999997 78999999999
Q ss_pred EEECCCCcEEeee-eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC
Q 019482 228 VYDISTWNKIGHK-RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (340)
Q Consensus 228 i~d~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 275 (340)
+||+++++++..+ .+|...|++++|+|||++|++|+.|++|+|||+..
T Consensus 295 iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 295 LVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 9999999988775 68999999999999999999999999999999964
No 107
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=9.2e-35 Score=251.43 Aligned_cols=285 Identities=13% Similarity=0.122 Sum_probs=226.5
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
+..+.+++|+| +..+++.++ .++.|.+|+...... .. ......+.+|...|.+++|+|++.++++++.
T Consensus 122 ~~~~~~~~~s~---~~~~~~~~~------~~~~i~~~d~~~g~~-~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~ 189 (433)
T 3bws_A 122 GFQPKSVRFID---NTRLAIPLL------EDEGMDVLDINSGQT-VR--LSPPEKYKKKLGFVETISIPEHNELWVSQMQ 189 (433)
T ss_dssp SSCBCCCEESS---SSEEEEEBT------TSSSEEEEETTTCCE-EE--ECCCHHHHTTCCEEEEEEEGGGTEEEEEEGG
T ss_pred CCCceEEEEeC---CCeEEEEeC------CCCeEEEEECCCCeE-ee--ecCcccccccCCceeEEEEcCCCEEEEEECC
Confidence 34566899998 335666554 445699998763211 00 0000134578999999999999999999999
Q ss_pred CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEE-EccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 162 (340)
|+.|++||+.+++....+. .|...+.+++|+|++++++ +++.|+.|++||+++++....+.. ...+.+++|
T Consensus 190 d~~v~~~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~ 261 (433)
T 3bws_A 190 ANAVHVFDLKTLAYKATVD-------LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLL 261 (433)
T ss_dssp GTEEEEEETTTCCEEEEEE-------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEE
T ss_pred CCEEEEEECCCceEEEEEc-------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEE
Confidence 9999999998877655543 2567899999999999875 555799999999998887766544 456899999
Q ss_pred cCCCCeEEEee--------CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC
Q 019482 163 SLDSEFLATTS--------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234 (340)
Q Consensus 163 ~~~~~~l~~~~--------~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 234 (340)
+|+++++++++ .|+.|++||+++++.+..+. +...+..++|+|+++.+ +++++.++.|++||++++
T Consensus 262 ~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l----~~~~~~~~~v~v~d~~~~ 335 (433)
T 3bws_A 262 SKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG--PPGNKRHIVSGNTENKI----YVSDMCCSKIEVYDLKEK 335 (433)
T ss_dssp CTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE--EEECEEEEEECSSTTEE----EEEETTTTEEEEEETTTT
T ss_pred cCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc--CCCCcceEEECCCCCEE----EEEecCCCEEEEEECCCC
Confidence 99999999888 48899999999998877664 23468899999999863 466688999999999998
Q ss_pred cEEeeeeccCCCeeEEEECCCCCEEEEeeC---------------CCcEEEEeccCceEeecccccccccceeeEEEecC
Q 019482 235 NKIGHKRLLRKPASVLSISLDGKYLAMGSK---------------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (340)
Q Consensus 235 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~ 299 (340)
+.+..+. +...+.+++|+|+|+++++++. ||.|++||+.+++.+..+.. ...+.+++|+|+
T Consensus 336 ~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~d 411 (433)
T 3bws_A 336 KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA---GNQPTGLDVSPD 411 (433)
T ss_dssp EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC---SSSEEEEEECTT
T ss_pred cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC---CCCCceEEEcCC
Confidence 8776665 5677999999999999988876 57999999999988876643 357899999999
Q ss_pred CeEEEEEec-CCcEEEEEec
Q 019482 300 QRVVLTASK-EWGAMITKLT 318 (340)
Q Consensus 300 ~~~l~~~~~-dg~i~iw~~~ 318 (340)
|++|++++. |+.|++|+++
T Consensus 412 g~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 412 NRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp SCEEEEEETTTTEEEEEEET
T ss_pred CCEEEEEECCCCeEEEEEec
Confidence 999988775 9999999985
No 108
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-36 Score=252.57 Aligned_cols=269 Identities=12% Similarity=0.033 Sum_probs=201.3
Q ss_pred ccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceee
Q 019482 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD 98 (340)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~ 98 (340)
..++++|+ .|+.|++|++... .....+. ...|.++.|+|+ +++++.|+.|++|+.......
T Consensus 48 ~~~l~sg~------~Dg~v~iwd~~~~--------~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~ 108 (343)
T 3lrv_A 48 KWVCMCRC------EDGALHFTQLKDS--------KTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITI 108 (343)
T ss_dssp EEEEEEEE------ETTEEEEEEESSS--------SCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEE
T ss_pred CCEEEEEC------CCCcEEEEECCCC--------cEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEE
Confidence 45677666 5677999999732 2222233 456888899988 999999999999987643321
Q ss_pred eeecccc---CCCCCCCCCeEEEEEec--CCCeEEEccCCCcEEEEeCCCCceeeccccC-ccceeEEEecCCCCeEEEe
Q 019482 99 INLLAKK---MPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKA-HKSVLDMDFSLDSEFLATT 172 (340)
Q Consensus 99 ~~~~~~~---~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~ 172 (340)
....... .....|..+|.+++|+| +++++++++.||.|++||+++++.......+ ...+.+++|+|++++|++|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg 188 (343)
T 3lrv_A 109 LDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALY 188 (343)
T ss_dssp EETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEE
T ss_pred eecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEE
Confidence 1111100 01123567899999999 9999999999999999999998876555343 3479999999999999999
Q ss_pred eCCCeEEEEEccCCeeE-EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec---cCCCee
Q 019482 173 STDGSARIWKTEDGVAW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL---LRKPAS 248 (340)
Q Consensus 173 ~~d~~v~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~i~ 248 (340)
+.|+.|++||+++++.+ ..+...|...|.+++|+|++.. +++++ ++.|++||+++++.+..+.. +...+.
T Consensus 189 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~-----l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 262 (343)
T 3lrv_A 189 SPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYW-----MVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTG 262 (343)
T ss_dssp CTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSE-----EEEEE-SSBEEEEETTSSTTCBSSCCCBC-----C
T ss_pred cCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCE-----EEEEe-CCeEEEEEcCCCCcceeeccccccccccc
Confidence 99999999999999887 6676546689999999999986 66666 45999999999876544433 333343
Q ss_pred --EEEECCCCCEEEEeeC-CCcEEEEeccCceEeecccccccccceeeEEEec---CCeEEEEEecCCcEEEEEec
Q 019482 249 --VLSISLDGKYLAMGSK-DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP---TQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 249 --~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~iw~~~ 318 (340)
+++|+|+|++|++++. |+.+++|++.+....... .++..++|.+ +.+.+++++.||.+.++-..
T Consensus 263 ~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 263 TVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp CEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred ceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 6999999999999988 999999999765432211 3677888888 88899999999999887643
No 109
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-35 Score=257.26 Aligned_cols=246 Identities=9% Similarity=-0.053 Sum_probs=200.3
Q ss_pred CCeeEEEEcCCCCeEEEEecCCCEEEEEecCce---eeeeeccccC----------------------------------
Q 019482 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA---TDINLLAKKM---------------------------------- 106 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~---~~~~~~~~~~---------------------------------- 106 (340)
.++.+++|+|+|++|+++ .++.|++||+.+++ ..........
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478999999999966665 56789999998887 3322221000
Q ss_pred -------------CCCCCCCCeEEEEEecCCCeE-EEccCCCcEEEEeCC--CCceeeccc--cCccceeEEEecCCCCe
Q 019482 107 -------------PPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRIMHWP--SLRIILDEP--KAHKSVLDMDFSLDSEF 168 (340)
Q Consensus 107 -------------~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d~~--~~~~~~~~~--~~~~~i~~~~~~~~~~~ 168 (340)
....|.+.|.+++|+|++++| ++++.||.|++||+. +++....+. .+...|.+++|+|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 001244579999999999996 899999999999999 777776665 44568999999999999
Q ss_pred EEEeeCCCeEEEEEccCCeeEE----EeecCCCCceeeEEEccC---CCcceEEEEEecCCcceEEEEECCCCcEEee-e
Q 019482 169 LATTSTDGSARIWKTEDGVAWT----FLTRNSDEKIELCRFSKD---GTKPFLFCTVQRGDKALLAVYDISTWNKIGH-K 240 (340)
Q Consensus 169 l~~~~~d~~v~iwd~~~~~~~~----~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-~ 240 (340)
|++++.|+.+++|++.+++... .+.. +...|.+++|+|+ ++. +++++.|+.|++||+++++.+.. +
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~-----l~s~~~d~~i~vwd~~~~~~~~~~~ 237 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILG-HVSMLTDVHLIKDSDGHQF-----IITSDRDEHIKISHYPQCFIVDKWL 237 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEE-CSSCEEEEEEEECTTSCEE-----EEEEETTSCEEEEEESCTTCEEEEC
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeec-ccCceEEEEEcCCCCCCcE-----EEEEcCCCcEEEEECCCCceeeeee
Confidence 9999999999999998876543 4443 4568999999999 776 78889999999999999987766 5
Q ss_pred eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc-----------------------ccccceeeEEEe
Q 019482 241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL-----------------------HLGTSIALVEFC 297 (340)
Q Consensus 241 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------------------~~~~~i~~~~~~ 297 (340)
..|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+... .....|.+++|+
T Consensus 238 ~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 316 (450)
T 2vdu_B 238 FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS 316 (450)
T ss_dssp CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence 5788999999999 9999999999999999999998877655321 113468999999
Q ss_pred cCCeEEEEEe-cCCcEEEEEe
Q 019482 298 PTQRVVLTAS-KEWGAMITKL 317 (340)
Q Consensus 298 ~~~~~l~~~~-~dg~i~iw~~ 317 (340)
|++++|++++ .|+.|+||++
T Consensus 317 ~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 317 KNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp SSSSEEEEEETTCSEEEEEEE
T ss_pred CCCCEEEEEECCCCeEEEEEe
Confidence 9999999998 8999999999
No 110
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.2e-34 Score=243.83 Aligned_cols=280 Identities=12% Similarity=0.071 Sum_probs=210.8
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeE-EEE
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF-VCS 81 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~ 81 (340)
+..+|.|++|+| ++.++++|+ ++.+++|+.++ ....... +...+..+++.++++.+ +++
T Consensus 18 h~~~V~~v~fs~---dg~~la~g~-------~~~~~iw~~~~--------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 77 (355)
T 3vu4_A 18 VSNPVTDYEFNQ---DQSCLILST-------LKSFEIYNVHP--------VAHIMSQ--EMRHLSKVRMLHRTNYVAFVT 77 (355)
T ss_dssp -CCCCCEEEECT---TSSEEEEEC-------SSEEEEEEETT--------EEEEEEE--ECSCCCEEEECTTSSEEEEEC
T ss_pred CCCceEEEEECC---CCCEEEEEc-------CCEEEEEecCC--------cceeeee--ecCCeEEEEEcCCCCEEEEEE
Confidence 457899999999 456777554 33478999762 2222222 22358889999988877 467
Q ss_pred ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC-ceeeccccCccceeEE
Q 019482 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-RIILDEPKAHKSVLDM 160 (340)
Q Consensus 82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~i~~~ 160 (340)
+.|+.|++||..+++....+. +...|.+++|+++. ++++ .|+.|++||+.++ +.+..+.. +...+
T Consensus 78 ~~d~~v~iWd~~~~~~~~~~~--------~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~ 143 (355)
T 3vu4_A 78 GVKEVVHIWDDVKKQDVSRIK--------VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVC 143 (355)
T ss_dssp SSTTEEEEEETTTTEEEEEEE--------CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEE
T ss_pred CCccEEEEEECCCCcEEEEEE--------CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceE
Confidence 778899999999888765542 45689999998864 4433 3789999999987 55555443 44455
Q ss_pred EecCCCCeEEE--eeCCCeEEEEEccCCe---------------e-EEEeecCCCCceeeEEEccCCCcceEEEEEecCC
Q 019482 161 DFSLDSEFLAT--TSTDGSARIWKTEDGV---------------A-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD 222 (340)
Q Consensus 161 ~~~~~~~~l~~--~~~d~~v~iwd~~~~~---------------~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 222 (340)
++++ .++++ |+.||.|++||+++++ + +..+. .|...|.+++|+|++++ +++++.
T Consensus 144 ~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~-~h~~~v~~~~~s~~g~~-----l~s~s~ 215 (355)
T 3vu4_A 144 EFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK-AHTNPIKMVRLNRKSDM-----VATCSQ 215 (355)
T ss_dssp EEET--TEEEEEESSCTTCEEEEECCC------------------CCEEEC-CCSSCEEEEEECTTSSE-----EEEEET
T ss_pred EEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE-ccCCceEEEEECCCCCE-----EEEEeC
Confidence 6666 56665 6889999999998765 1 45555 45678999999999997 899999
Q ss_pred cce-EEEEECCCCcEEeeee-c-cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeec--c---------------
Q 019482 223 KAL-LAVYDISTWNKIGHKR-L-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW--S--------------- 282 (340)
Q Consensus 223 d~~-i~i~d~~~~~~~~~~~-~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~--------------- 282 (340)
|++ |++||+++++.+..+. + |...|.+++|+|++++|++++.|+.|++||++....... +
T Consensus 216 d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (355)
T 3vu4_A 216 DGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSL 295 (355)
T ss_dssp TCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCS
T ss_pred CCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccce
Confidence 998 9999999999998888 4 889999999999999999999999999999976432110 0
Q ss_pred -----cccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCC
Q 019482 283 -----KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKG 325 (340)
Q Consensus 283 -----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 325 (340)
.... ..+...++|++|++.|++++.||.+++|++......+.
T Consensus 296 ~~~~~~~~~-~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~~~ 342 (355)
T 3vu4_A 296 CNFKLSVDK-HVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEMER 342 (355)
T ss_dssp EEEECCCCT-TCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTTTE
T ss_pred eEEEeccCC-CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCCce
Confidence 0001 12347799999999999999999999999987665433
No 111
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=6.6e-35 Score=245.48 Aligned_cols=239 Identities=12% Similarity=0.077 Sum_probs=190.5
Q ss_pred EEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeE-EEccCCCcE
Q 019482 58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHL 136 (340)
Q Consensus 58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i 136 (340)
.++.|...|++++|+|+|++|++|+.++ +++|++...+..... +...+..+++.++++.+ ++++.|++|
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~d~~v 83 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ---------EMRHLSKVRMLHRTNYVAFVTGVKEVV 83 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE---------ECSCCCEEEECTTSSEEEEECSSTTEE
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee---------ecCCeEEEEEcCCCCEEEEEECCccEE
Confidence 4578999999999999999999998887 899999876654332 11247788898888877 567888999
Q ss_pred EEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCC-eeEEEeecCCCCceeeEEEccCCCcceEE
Q 019482 137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (340)
Q Consensus 137 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (340)
++||+.+++.+..+. +...|.+++|+++. ++++ .|+.|++||++++ +.+..+.. +...+++++ .. +
T Consensus 84 ~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~--~~--l- 150 (355)
T 3vu4_A 84 HIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR----FGGVCEFSN--GL--L- 150 (355)
T ss_dssp EEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE----EEEEEEEET--TE--E-
T ss_pred EEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc----CCceEEEEc--cE--E-
Confidence 999999998887664 66789999999764 4444 3789999999988 66665543 345566777 22 1
Q ss_pred EEEe-cCCcceEEEEECCCCc---------------E-EeeeeccCCCeeEEEECCCCCEEEEeeCCCc-EEEEeccCce
Q 019482 216 CTVQ-RGDKALLAVYDISTWN---------------K-IGHKRLLRKPASVLSISLDGKYLAMGSKDGD-ICVVDVKKME 277 (340)
Q Consensus 216 ~~~~-~~~d~~i~i~d~~~~~---------------~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~i~d~~~~~ 277 (340)
.+. ++.++.|++||+++++ + +..+..|...|.+++|+|+|++|++++.|+. |++||+++++
T Consensus 151 -a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~ 229 (355)
T 3vu4_A 151 -VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV 229 (355)
T ss_dssp -EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC
T ss_pred -EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 233 7899999999999865 2 5678899999999999999999999999998 9999999999
Q ss_pred Eeeccccc-ccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 278 INHWSKRL-HLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 278 ~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
.+..+..+ | ...|.+++|+|++++|++++.|+.|++|++..+.
T Consensus 230 ~~~~~~~g~h-~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 230 LVREFRRGLD-RADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EEEEEECTTC-CSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred EEEEEEcCCC-CCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 98887644 5 6799999999999999999999999999997654
No 112
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=248.65 Aligned_cols=233 Identities=11% Similarity=0.101 Sum_probs=189.3
Q ss_pred EEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC-------
Q 019482 70 AVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP------- 142 (340)
Q Consensus 70 ~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~------- 142 (340)
.+.+++.+|++|+.||.|++||+.+++....+. ...|.++.|+|+ +++++.|++|++|+..
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---------~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~ 110 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---------TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILD 110 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE---------EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe---------cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEee
Confidence 345678899999999999999999887665553 245667788887 9999999999999765
Q ss_pred --CCceeeccc-cCccceeEEEecC--CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEE
Q 019482 143 --SLRIILDEP-KAHKSVLDMDFSL--DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT 217 (340)
Q Consensus 143 --~~~~~~~~~-~~~~~i~~~~~~~--~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 217 (340)
+++.+.... .|...|.+++|+| +++++++++.|++|++||+++++.......++...+.+++|+|++.. +
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~-----l 185 (343)
T 3lrv_A 111 SKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLL-----L 185 (343)
T ss_dssp TTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCE-----E
T ss_pred cCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCE-----E
Confidence 444333333 4456899999999 99999999999999999999999877665566667999999999997 7
Q ss_pred EecCCcceEEEEECCCCcEE-eeeec-cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccc--ccccccee-
Q 019482 218 VQRGDKALLAVYDISTWNKI-GHKRL-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR--LHLGTSIA- 292 (340)
Q Consensus 218 ~~~~~d~~i~i~d~~~~~~~-~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~i~- 292 (340)
++++.|+.|++||+++++.+ ..+.. |..+|.+++|+|++.+|++++ |+.|++||+++++....+.. .| ..++.
T Consensus 186 asg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~ 263 (343)
T 3lrv_A 186 ALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIP-EFKTGT 263 (343)
T ss_dssp EEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC------CC
T ss_pred EEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccc-cccccc
Confidence 88899999999999999877 67777 899999999999999999999 45999999998876544432 12 23344
Q ss_pred -eEEEecCCeEEEEEec-CCcEEEEEecCCC
Q 019482 293 -LVEFCPTQRVVLTASK-EWGAMITKLTVPA 321 (340)
Q Consensus 293 -~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~ 321 (340)
+++|+|++++|++++. |+.++||++....
T Consensus 264 ~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 264 VTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred eEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 6999999999999998 9999999996543
No 113
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-35 Score=270.94 Aligned_cols=247 Identities=11% Similarity=0.119 Sum_probs=202.4
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCC--CCeEEE
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVC 80 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~ 80 (340)
+.++|+|++|+|+ +.++++|+ .++.|++|++... .......+.+|.+.|++++|+|+ +++|++
T Consensus 8 H~~~V~~l~~s~d---g~~latg~------~dg~I~vwd~~~~------~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s 72 (753)
T 3jro_A 8 HNELIHDAVLDYY---GKRLATCS------SDKTIKIFEVEGE------THKLIDTLTGHEGPVWRVDWAHPKFGTILAS 72 (753)
T ss_dssp CCCCEEEECCCSS---SCCEEEEE------TTTEEEEEEEETT------EEEEEEEECCCSSCEEEEEECCTTSCSEEEE
T ss_pred CcceeEEEEECCC---CCeEEEEE------CCCcEEEEecCCC------CCccceeccCCcCceEEEEecCCCCCCEEEE
Confidence 4689999999995 34566665 5667999998632 23445678899999999999988 999999
Q ss_pred EecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC--CCeEEEccCCCcEEEEeCCCCc--eeeccccCccc
Q 019482 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLR--IILDEPKAHKS 156 (340)
Q Consensus 81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~ 156 (340)
++.||.|++||+.+++....... ..|...|.+++|+|+ ++++++|+.||.|++||+.++. .......|...
T Consensus 73 ~s~Dg~I~vwd~~~~~~~~~~~~-----~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~ 147 (753)
T 3jro_A 73 CSYDGKVLIWKEENGRWSQIAVH-----AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 147 (753)
T ss_dssp EETTSCEEEEEEETTEEEEEEEE-----CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSC
T ss_pred EeCCCeEEEEECCCCcccccccc-----cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCc
Confidence 99999999999998762221111 137789999999999 9999999999999999998773 33445567789
Q ss_pred eeEEEecC-------------CCCeEEEeeCCCeEEEEEccCC----eeEEEeecCCCCceeeEEEccC---CCcceEEE
Q 019482 157 VLDMDFSL-------------DSEFLATTSTDGSARIWKTEDG----VAWTFLTRNSDEKIELCRFSKD---GTKPFLFC 216 (340)
Q Consensus 157 i~~~~~~~-------------~~~~l~~~~~d~~v~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~ 216 (340)
|.+++|+| +++++++|+.||.|++||++++ .....+. .+...|.+++|+|+ +..
T Consensus 148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~~~----- 221 (753)
T 3jro_A 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSY----- 221 (753)
T ss_dssp EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEE-----
T ss_pred eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec-CCCCcEEEEEeccCCCCCCE-----
Confidence 99999999 5899999999999999999887 3444444 45678999999999 675
Q ss_pred EEecCCcceEEEEECCCCc-----EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC
Q 019482 217 TVQRGDKALLAVYDISTWN-----KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (340)
Q Consensus 217 ~~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 275 (340)
+++++.|+.|++||+++++ .......+...+++++|+|+|+++++++.||.|++||+.+
T Consensus 222 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 222 LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred EEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 7889999999999999864 3333445778899999999999999999999999999874
No 114
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.1e-34 Score=251.16 Aligned_cols=254 Identities=15% Similarity=0.206 Sum_probs=214.4
Q ss_pred ecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEE
Q 019482 60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (340)
Q Consensus 60 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 139 (340)
.+|...|.++++ ++++|++|+.||.|++||+.+++....+. .|...|.+++| ++++|++|+.||.|++|
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~l~~--~~~~l~sg~~dg~i~vw 198 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILT-------GHTGSVLCLQY--DERVIITGSSDSTVRVW 198 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEEC-------CCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEc-------CCCCcEEEEEE--CCCEEEEEcCCCeEEEE
Confidence 456677988887 78999999999999999999887665553 27789999998 78899999999999999
Q ss_pred eCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEE--EeecCCCCceeeEEEccCCCcceEEEE
Q 019482 140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT--FLTRNSDEKIELCRFSKDGTKPFLFCT 217 (340)
Q Consensus 140 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~ 217 (340)
|+.+++.+..+..|...|.+++|+ +..+++++.|+.|++||+++++... .....+...+.+++| +++. +
T Consensus 199 d~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~-----l 269 (435)
T 1p22_A 199 DVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKY-----I 269 (435)
T ss_dssp ESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTE-----E
T ss_pred ECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCE-----E
Confidence 999999998888888899999997 4589999999999999999877652 233355678999999 5555 7
Q ss_pred EecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEe
Q 019482 218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC 297 (340)
Q Consensus 218 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~ 297 (340)
++++.|+.|++||+++++.+..+..|...+.++.+ +++++++|+.||.|++||+++++.+..+. .| ...|.+++|
T Consensus 270 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h-~~~v~~~~~- 344 (435)
T 1p22_A 270 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE-GH-EELVRCIRF- 344 (435)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEEC-CC-SSCEEEEEC-
T ss_pred EEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEe-CC-cCcEEEEEe-
Confidence 88899999999999999999999999999999998 56899999999999999999998887764 56 578999998
Q ss_pred cCCeEEEEEecCCcEEEEEecCCCCCC------CCccccccccccccC
Q 019482 298 PTQRVVLTASKEWGAMITKLTVPADWK------GLSLPLLHSHSQNSV 339 (340)
Q Consensus 298 ~~~~~l~~~~~dg~i~iw~~~~~~~~~------~~~~~~~h~~~v~~v 339 (340)
++.+|++|+.||.|++|++....... .......|...|.++
T Consensus 345 -~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 391 (435)
T 1p22_A 345 -DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL 391 (435)
T ss_dssp -CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE
T ss_pred -cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEE
Confidence 78899999999999999997543211 234456787777765
No 115
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.9e-35 Score=254.19 Aligned_cols=261 Identities=13% Similarity=0.129 Sum_probs=206.4
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcc--cCCeeeEEEecCCCCeeEEEEcCCCC-eEE
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY--TSPLVTYVFDESEGDPMTIAVNPSGD-DFV 79 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~ 79 (340)
+.++|++++|+|.. ..++++|+ .++.|.+|++........ ........+.+|...|.+++|+|++. +|+
T Consensus 127 h~~~v~~l~~~p~~--~~~lat~~------~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 198 (430)
T 2xyi_A 127 HEGEVNRARYMPQN--ACVIATKT------PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL 198 (430)
T ss_dssp ESSCCSEEEEETTE--EEEEEEEC------SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEE
T ss_pred CCCcEEEEEECCCC--CcEEEEEC------CCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEE
Confidence 45789999999942 35777666 456699999975322111 01334567889999999999999998 999
Q ss_pred EEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCC---ceeeccccCcc
Q 019482 80 CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSL---RIILDEPKAHK 155 (340)
Q Consensus 80 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~ 155 (340)
+++.||.|++|++..................|...|.+++|+| ++.+|++++.||.|++||++++ +....+..|..
T Consensus 199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 278 (430)
T 2xyi_A 199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA 278 (430)
T ss_dssp EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence 9999999999999874321111110011124778999999999 6789999999999999999977 45556667778
Q ss_pred ceeEEEecCCCC-eEEEeeCCCeEEEEEccC-CeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC
Q 019482 156 SVLDMDFSLDSE-FLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (340)
Q Consensus 156 ~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 233 (340)
.|.+++|+|+++ ++++|+.|+.|++||+++ .+++..+.. +...|.+++|+|+++.+ +++++.|+.|++||++.
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~-h~~~v~~i~~sp~~~~~----l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNETI----LASSGTDRRLHVWDLSK 353 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC-CSSCEEEEEECSSCTTE----EEEEETTSCCEEEEGGG
T ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec-CCCCEEEEEECCCCCCE----EEEEeCCCcEEEEeCCC
Confidence 999999999887 688999999999999998 456666664 45689999999999753 67888999999999987
Q ss_pred --------------CcEEeeeeccCCCeeEEEECCCCC-EEEEeeCCCcEEEEeccCc
Q 019482 234 --------------WNKIGHKRLLRKPASVLSISLDGK-YLAMGSKDGDICVVDVKKM 276 (340)
Q Consensus 234 --------------~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~ 276 (340)
.+.+.....|...|.+++|+|+++ +|++++.||.|++|++...
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 356666778888999999999998 8999999999999998764
No 116
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=9.1e-36 Score=255.47 Aligned_cols=288 Identities=11% Similarity=0.074 Sum_probs=220.1
Q ss_pred CceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC-CCCeEEEEecCCCEEEEEecCceeeeeeccc------cCC
Q 019482 35 SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAK------KMP 107 (340)
Q Consensus 35 ~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~------~~~ 107 (340)
..+++|.++ .......+.+|.+.|++++|+| ++++|++++.||.|++||+.+.......... ...
T Consensus 23 ~~~~v~~~~--------~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 94 (408)
T 4a11_B 23 STRRVLGLE--------LNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDH 94 (408)
T ss_dssp HHHHHHTEE--------ECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTC
T ss_pred Ccceeeccc--------cCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccc
Confidence 345666655 2233456778999999999999 9999999999999999999877654333211 011
Q ss_pred CCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCC---CCeEEEeeCCCeEEEEEc
Q 019482 108 PLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD---SEFLATTSTDGSARIWKT 183 (340)
Q Consensus 108 ~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~v~iwd~ 183 (340)
...|...|.+++|+| ++++|++++.||.|++||+.+++....+. +...+.++.|+|. +.++++++.|+.|++||+
T Consensus 95 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 173 (408)
T 4a11_B 95 PDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL 173 (408)
T ss_dssp TTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEES
T ss_pred cccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeC
Confidence 123788999999999 77899999999999999999988776554 6678899999884 448999999999999999
Q ss_pred cCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc-EEeee---------------eccCCCe
Q 019482 184 EDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHK---------------RLLRKPA 247 (340)
Q Consensus 184 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~---------------~~~~~~i 247 (340)
++++.+..+.. +...|.+++|+|+++.+ +++++.|+.|++||++++. .+..+ ..+...|
T Consensus 174 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 248 (408)
T 4a11_B 174 KSGSCSHILQG-HRQEILAVSWSPRYDYI----LATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV 248 (408)
T ss_dssp SSSCCCEEECC-CCSCEEEEEECSSCTTE----EEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCE
T ss_pred CCcceeeeecC-CCCcEEEEEECCCCCcE----EEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCce
Confidence 99988888864 45689999999999853 5788899999999998765 22222 4577889
Q ss_pred eEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccc---ccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCC
Q 019482 248 SVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL---GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWK 324 (340)
Q Consensus 248 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 324 (340)
.+++|+|++++|++++.||.|++||+.+++.......... ...+........+..+++++.|+.|++|++....
T Consensus 249 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--- 325 (408)
T 4a11_B 249 NGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE--- 325 (408)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC---
T ss_pred eEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCc---
Confidence 9999999999999999999999999998876544321110 1122222223345667778889999999996544
Q ss_pred CCccccccccccccC
Q 019482 325 GLSLPLLHSHSQNSV 339 (340)
Q Consensus 325 ~~~~~~~h~~~v~~v 339 (340)
.......|...|.++
T Consensus 326 ~~~~~~~~~~~v~~~ 340 (408)
T 4a11_B 326 QITMLKGHYKTVDCC 340 (408)
T ss_dssp EEEEECCCSSCEEEE
T ss_pred ceeeeccCCCeEEEE
Confidence 345556677777654
No 117
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=2.3e-34 Score=232.62 Aligned_cols=269 Identities=13% Similarity=0.079 Sum_probs=184.0
Q ss_pred CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec-CCCE-EEEEec--Cc--eeeeeeccccC
Q 019482 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-NGGC-KLFEVY--GG--ATDINLLAKKM 106 (340)
Q Consensus 33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-d~~i-~iw~~~--~~--~~~~~~~~~~~ 106 (340)
....+.+|+..... .-...++++.|+.+|..+.+.||-.-|++..- +=.+ .++.+. .. .....+...
T Consensus 61 ~~~~v~lw~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~-- 133 (356)
T 2w18_A 61 CEDVVSLWKALDAW-----QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKS-- 133 (356)
T ss_dssp ESSEEEEEEESSSS-----BEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEE--
T ss_pred ccceEEEcccCCCc-----cceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeC--
Confidence 34459999987321 23567889999999999999997654443221 1111 111111 00 000000000
Q ss_pred CCCCCCCCeEEEEEecCCCeEEEcc--CCCcEEEEeC-CCCceeeccccCccceeEEEecC---CCCeEEEeeCCCeEEE
Q 019482 107 PPLQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMHW-PSLRIILDEPKAHKSVLDMDFSL---DSEFLATTSTDGSARI 180 (340)
Q Consensus 107 ~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~~d~-~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~v~i 180 (340)
.+...|..+ ++++++.+++ .|+.|++|++ ++++.+.....|...+..++|+| ++.+|++++.|++|+|
T Consensus 134 ---g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkI 207 (356)
T 2w18_A 134 ---GNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVI 207 (356)
T ss_dssp ---EEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEE
T ss_pred ---CCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEE
Confidence 022223333 4666666633 5999999999 55777777777877888999998 7799999999999999
Q ss_pred EEccCCeeEEEeecCCC--CceeeEEEccCCCcceEE-------EEEecCCcceEEEEECCCCcEEeeee-----ccCCC
Q 019482 181 WKTEDGVAWTFLTRNSD--EKIELCRFSKDGTKPFLF-------CTVQRGDKALLAVYDISTWNKIGHKR-----LLRKP 246 (340)
Q Consensus 181 wd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~-------~~~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~ 246 (340)
||+++++++.++..++. ..+.+++|+|+|..+... .+++++.|++|++||..+++.+..+. +|...
T Consensus 208 WDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~ 287 (356)
T 2w18_A 208 WNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGR 287 (356)
T ss_dssp EETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCC
T ss_pred EECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcce
Confidence 99999999999975432 357778999999753211 13678899999999999998775542 33333
Q ss_pred eeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482 247 ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL 317 (340)
Q Consensus 247 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~ 317 (340)
+.+ .+.++.++++++.|++|+|||+.+++.+..+. +|....+..++|+|||++|++|+.|++|+||++
T Consensus 288 ~ls--g~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~-gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 288 FLE--GDVKDHCAAAILTSGTIAIWDLLLGQCTALLP-PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEE--EEEETTEEEEEETTSCEEEEETTTCSEEEEEC-CC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred eEc--cccCCCEEEEEcCCCcEEEEECCCCcEEEEec-CCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 333 33347889999999999999999999988774 553334556899999999999999999999996
No 118
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=245.37 Aligned_cols=265 Identities=15% Similarity=0.168 Sum_probs=208.5
Q ss_pred eeEEEecCCCCeeEEEEcCC---CCeEEEEecCCCEEEEEecC-ceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEc
Q 019482 55 VTYVFDESEGDPMTIAVNPS---GDDFVCSTTNGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG 130 (340)
Q Consensus 55 ~~~~~~~h~~~v~~~~~~~~---~~~l~~~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 130 (340)
....+.+|.+.|++++|+|+ |++|++++.||.|++||+.+ +........ .|...|.+++|+|++++|+++
T Consensus 31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ------MHTGPVLDVCWSDDGSKVFTA 104 (368)
T ss_dssp CEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE------ECSSCEEEEEECTTSSEEEEE
T ss_pred eeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec------cccCCEEEEEECcCCCEEEEE
Confidence 34567899999999999999 69999999999999999987 433322221 277899999999999999999
Q ss_pred cCCCcEEEEeCCCCceeeccccCccceeEEEe--cCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccC
Q 019482 131 GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF--SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD 208 (340)
Q Consensus 131 ~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 208 (340)
+.||.|++||+++++... ...|...|.+++| +|++++|++++.|+.|++||+++++.+..+..+ ..+.++.+.++
T Consensus 105 ~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~ 181 (368)
T 3mmy_A 105 SCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP--ERCYCADVIYP 181 (368)
T ss_dssp ETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS--SCEEEEEEETT
T ss_pred cCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC--CCceEEEecCC
Confidence 999999999999887665 5678889999999 889999999999999999999999988888744 35677777654
Q ss_pred CCcceEEEEEecCCcceEEEEECCCCcEEeeee--ccCCCeeEEEECCCCCE----EEEeeCCCcEEEEeccCce---Ee
Q 019482 209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR--LLRKPASVLSISLDGKY----LAMGSKDGDICVVDVKKME---IN 279 (340)
Q Consensus 209 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~s~~~~~----l~~~~~dg~i~i~d~~~~~---~~ 279 (340)
. ++.++.++.+.+||++......... .......++.+.++... +++++.||.|++||++... ..
T Consensus 182 --~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~ 254 (368)
T 3mmy_A 182 --M-----AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDN 254 (368)
T ss_dssp --E-----EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHS
T ss_pred --e-----eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccc
Confidence 3 5677789999999998765433222 23355667777665554 9999999999999998763 22
Q ss_pred ecccccccc-----------cceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482 280 HWSKRLHLG-----------TSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV 339 (340)
Q Consensus 280 ~~~~~~~~~-----------~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v 339 (340)
..+ ..|.. .+|.+++|+|++++|++++.||.|++|++.... .......|...|.++
T Consensus 255 ~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~ 321 (368)
T 3mmy_A 255 FTF-KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART---KLKTSEQLDQPISAC 321 (368)
T ss_dssp EEE-ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE---EEEECCCCSSCEEEE
T ss_pred eee-eeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc---EEEEecCCCCCceEE
Confidence 222 23311 169999999999999999999999999997443 344555677666654
No 119
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=6e-34 Score=245.29 Aligned_cols=249 Identities=15% Similarity=0.192 Sum_probs=204.8
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
+...|+|++|+| ++.++++|+ .++.|++|++. .......+.+|...+.+++++ +..|++++
T Consensus 146 ~~~~V~sv~fsp---dg~~lasgs------~Dg~v~iWd~~--------~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs 206 (420)
T 4gga_A 146 PGEYISSVAWIK---EGNYLAVGT------SSAEVQLWDVQ--------QQKRLRNMTSHSARVGSLSWN--SYILSSGS 206 (420)
T ss_dssp TTCCEEEEEECT---TSSEEEEEE------TTSCEEEEETT--------TTEEEEEECCCSSCEEEEEEE--TTEEEEEE
T ss_pred CCCcEEEEEECC---CCCEEEEEE------CCCeEEEEEcC--------CCcEEEEEeCCCCceEEEeeC--CCEEEEEe
Confidence 356799999999 456777776 56669999987 555667789999999998874 67999999
Q ss_pred cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCce----eeccccCcccee
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI----ILDEPKAHKSVL 158 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~----~~~~~~~~~~i~ 158 (340)
.|+.+++||............ .|...+..+.|+|+++++++++.|+.+++|+..+++. +.....+...|.
T Consensus 207 ~d~~i~~~d~~~~~~~~~~~~------~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~ 280 (420)
T 4gga_A 207 RSGHIHHHDVRVAEHHVATLS------GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK 280 (420)
T ss_dssp TTSEEEEEETTSSSCEEEEEE------CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEE
T ss_pred CCCceeEeeecccceeeEEec------ccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCcee
Confidence 999999999876544332222 3778999999999999999999999999999987653 334556677899
Q ss_pred EEEecCCCC-eEEE--eeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc
Q 019482 159 DMDFSLDSE-FLAT--TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (340)
Q Consensus 159 ~~~~~~~~~-~l~~--~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~ 235 (340)
+++|+|++. .+++ |+.|++|++||++++++...+..+ ..+.++.|+|++..++ ...+..|+.|++||+++++
T Consensus 281 ~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~--~~v~~~~~~~~~~~lv---~~sg~~d~~I~iwd~~~~~ 355 (420)
T 4gga_A 281 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH--SQVCSILWSPHYKELI---SGHGFAQNQLVIWKYPTMA 355 (420)
T ss_dssp EEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS--SCEEEEEEETTTTEEE---EEECTTTCCEEEEETTTCC
T ss_pred eeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc--cceeeeeecCCCCeEE---EEEecCCCEEEEEECCCCc
Confidence 999999654 4554 458999999999999998888743 4699999999998731 2345579999999999999
Q ss_pred EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeec
Q 019482 236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW 281 (340)
Q Consensus 236 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 281 (340)
++..+.+|...|++++|+|+|++|++|+.|++|++||+....+.+.
T Consensus 356 ~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~ 401 (420)
T 4gga_A 356 KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR 401 (420)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC--
T ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccch
Confidence 9999999999999999999999999999999999999987655443
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1e-32 Score=235.49 Aligned_cols=259 Identities=15% Similarity=0.163 Sum_probs=211.7
Q ss_pred CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeE-EEEecCCCEEEEEecCceeeeeeccccCCCCCC
Q 019482 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF-VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD 111 (340)
Q Consensus 33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 111 (340)
.++.|++|+.+ .......+.+|. .+.+++|+|+|+++ ++++.|+.|++||+.+++....+. +
T Consensus 10 ~d~~v~v~d~~--------~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~--------~ 72 (391)
T 1l0q_A 10 ESDNISVIDVT--------SNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP--------A 72 (391)
T ss_dssp TTTEEEEEETT--------TTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE--------C
T ss_pred CCCEEEEEECC--------CCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE--------C
Confidence 56679999986 444555666664 58999999999977 567789999999999887765543 2
Q ss_pred CCCeEEEEEecCCCeEE-EccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeE-EEeeCCCeEEEEEccCCeeE
Q 019482 112 AGPQKCLSFSVDGSRFA-AGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAW 189 (340)
Q Consensus 112 ~~~v~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~v~iwd~~~~~~~ 189 (340)
...+.+++|+|++++|+ +++.++.|++||+.+++....+. ++..+.+++|+|+++.+ ++++.|+.|++||+++++.+
T Consensus 73 ~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 151 (391)
T 1l0q_A 73 GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI 151 (391)
T ss_dssp SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 34899999999999775 55567999999999988776554 45578999999999977 68888999999999999988
Q ss_pred EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEee---CCC
Q 019482 190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS---KDG 266 (340)
Q Consensus 190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg 266 (340)
..+..+ ..+..++|+|+++.+ ++++..++.|++||+++++.+..+. +...+.+++|+|+++++++++ .++
T Consensus 152 ~~~~~~--~~~~~~~~~~dg~~l----~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~ 224 (391)
T 1l0q_A 152 NTVSVG--RSPKGIAVTPDGTKV----YVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFN 224 (391)
T ss_dssp EEEECC--SSEEEEEECTTSSEE----EEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCC
T ss_pred EEEecC--CCcceEEECCCCCEE----EEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCC
Confidence 877643 357999999999862 3567889999999999988776655 355789999999999999988 689
Q ss_pred cEEEEeccCceEeecccccccccceeeEEEecCCeEE-EEEecCCcEEEEEecC
Q 019482 267 DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVV-LTASKEWGAMITKLTV 319 (340)
Q Consensus 267 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iw~~~~ 319 (340)
.|++||+.+++.+..+.. + ..+.+++|+|++++| ++++.|+.+++|++..
T Consensus 225 ~v~~~d~~~~~~~~~~~~-~--~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 225 TVSMIDTGTNKITARIPV-G--PDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp EEEEEETTTTEEEEEEEC-C--SSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred cEEEEECCCCeEEEEEec-C--CCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 999999999988776643 3 357899999999877 6778899999999864
No 121
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-34 Score=245.39 Aligned_cols=240 Identities=9% Similarity=-0.024 Sum_probs=184.8
Q ss_pred CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC
Q 019482 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (340)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~ 141 (340)
-...|.+++|+|||+++|+++.|++|+ |....+. + ..|...|.+++|+|+| .++.+.+|+.
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~---l-------~gh~~~v~~V~FsPdg-------~~~~~~~~~~ 74 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD---I-------NCNSKNLFHVKEFPLE-------FENKLDFELA 74 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC---C-------SSBGGGTEEEEEECCC-------CCCTTTTSCC
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccce---e-------cCCCccEEEEEECCCC-------CcceEEEEeC
Confidence 456799999999999999999999999 6444322 1 1488999999999998 4666666554
Q ss_pred CCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCC----CceeeEEEccCCCcceEEEE
Q 019482 142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD----EKIELCRFSKDGTKPFLFCT 217 (340)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~ 217 (340)
+.. ....+ .+...|.+++|+|+|++||+++.||.|++||.+. ++..+. ++. ..+.+++|||||+. +
T Consensus 75 ~~~-~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~-----L 144 (588)
T 2j04_A 75 QQN-GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESS-----I 144 (588)
T ss_dssp CSS-CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSC-----E
T ss_pred CCc-eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCE-----E
Confidence 322 23222 4467899999999999999999999999999543 555554 332 25999999999998 8
Q ss_pred EecCCcceEEEEECCCCcE-------Eeee----eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEe---eccc
Q 019482 218 VQRGDKALLAVYDISTWNK-------IGHK----RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN---HWSK 283 (340)
Q Consensus 218 ~~~~~d~~i~i~d~~~~~~-------~~~~----~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~ 283 (340)
++++.|++|++||+.++.. +..+ .+|...|.+++|+||| +++++.|+.|++||+.+++.. +.+.
T Consensus 145 Asgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~ 222 (588)
T 2j04_A 145 VVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ 222 (588)
T ss_dssp EEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE
T ss_pred EEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec
Confidence 9999999999999998752 4555 4566799999999999 888889999999999887732 2333
Q ss_pred ccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482 284 RLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV 339 (340)
Q Consensus 284 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v 339 (340)
..| ...|.+++|+ |+.||+++ ++.|++|++.... .......|...+++|
T Consensus 223 ~~h-~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~---~~~~~~gh~~~V~~v 271 (588)
T 2j04_A 223 NAS-RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYS---ISSLKTGSLENFHII 271 (588)
T ss_dssp CCC-SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTE---EEEEECSCCSCCCEE
T ss_pred ccc-cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCe---EEEEEcCCCceEEEE
Confidence 345 5789999999 68899887 6999999986433 212333677766654
No 122
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.7e-32 Score=225.32 Aligned_cols=255 Identities=11% Similarity=0.098 Sum_probs=205.4
Q ss_pred eeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc
Q 019482 66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR 145 (340)
Q Consensus 66 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 145 (340)
.++|+||+++ .||+| .|++|+|||+.+++....+... .|...|.+++|+|++++|++|+.||+|++||+++++
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~-----~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~ 100 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQME-----QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 100 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECC-----STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEec-----CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce
Confidence 5789999876 66665 5899999999998876555322 377889999999999999999999999999999999
Q ss_pred eeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcce
Q 019482 146 IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225 (340)
Q Consensus 146 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~ 225 (340)
.+..+..|...+.++.+ ++..+++++.++.+++|+.............+...+..+.++++++. +++++.|+.
T Consensus 101 ~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~s~~~d~~ 173 (318)
T 4ggc_A 101 RLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-----LASGGNDNL 173 (318)
T ss_dssp EEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSE-----EEEEETTSC
T ss_pred eEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCE-----EEEEecCcc
Confidence 99888888777766554 57899999999999999998765544444456678999999999997 788999999
Q ss_pred EEEEECCCCcE----EeeeeccCCCeeEEEECCCCCEE---EEeeCCCcEEEEeccCceEeecccccccccceeeEEEec
Q 019482 226 LAVYDISTWNK----IGHKRLLRKPASVLSISLDGKYL---AMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298 (340)
Q Consensus 226 i~i~d~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l---~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~ 298 (340)
|++||+++++. ......+...+..+.++|++..+ ++++.++.|++||........... + ...+..+.|+|
T Consensus 174 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~--~-~~~v~~~~~~~ 250 (318)
T 4ggc_A 174 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--A-HSQVCSILWSP 250 (318)
T ss_dssp EEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE--C-SSCEEEEEEET
T ss_pred eeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc--c-eeeeeeeeecc
Confidence 99999998753 33445567789999999976533 456788999999999887766543 2 45799999999
Q ss_pred CCeEEEEEe--cCCcEEEEEecCCCCCCCCccccccccccccCC
Q 019482 299 TQRVVLTAS--KEWGAMITKLTVPADWKGLSLPLLHSHSQNSVS 340 (340)
Q Consensus 299 ~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~vs 340 (340)
+++.+++++ .|+.|+||++.... .+.....|.+.|++|+
T Consensus 251 ~~~~~~~~sg~~d~~i~iwd~~~~~---~~~~l~gH~~~V~~l~ 291 (318)
T 4ggc_A 251 HYKELISGHGFAQNQLVIWKYPTMA---KVAELKGHTSRVLSLT 291 (318)
T ss_dssp TTTEEEEEECTTTCCEEEEETTTCC---EEEEECCCSSCEEEEE
T ss_pred cccceEEEEEcCCCEEEEEECCCCc---EEEEEcCCCCCEEEEE
Confidence 998877654 79999999986544 4566678988887763
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=4.4e-31 Score=228.33 Aligned_cols=297 Identities=9% Similarity=0.018 Sum_probs=222.2
Q ss_pred ceeEEee---eeecCCCccEEEEcCCCC------cccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCC
Q 019482 5 GTVTCGS---WIKRPENVNLVVLGKSSR------ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG 75 (340)
Q Consensus 5 ~~v~~~~---w~~~~~~~~~~~~g~~~~------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 75 (340)
..++.++ |+|+.. ..+++...... .+..++.+.+|.+++....+ .....+..+ ..+.+++|+|++
T Consensus 61 ~g~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~----~~~~~~~~~-~~~~~~~~s~~~ 134 (433)
T 3bws_A 61 IALVEMAIPVYKDEKE-IELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITH----RFISRFKTG-FQPKSVRFIDNT 134 (433)
T ss_dssp EEEEEEEEECCCTTCC-EEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSE----EEEEEEECS-SCBCCCEESSSS
T ss_pred CccEEEEEeeccCCCc-EEEEEEccccCcceeeecccCCCceEEEEECCCCCcc----eEEEEEcCC-CCceEEEEeCCC
Confidence 4566777 887533 22222222111 12345556888887543221 222334444 457799999977
Q ss_pred CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCcc
Q 019482 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK 155 (340)
Q Consensus 76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~ 155 (340)
.++++++.++.|++||+.+++......... ...|...|.+++|+|+++++++++.|+.|++||+++++....+..+..
T Consensus 135 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~ 212 (433)
T 3bws_A 135 RLAIPLLEDEGMDVLDINSGQTVRLSPPEK--YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGK 212 (433)
T ss_dssp EEEEEBTTSSSEEEEETTTCCEEEECCCHH--HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSS
T ss_pred eEEEEeCCCCeEEEEECCCCeEeeecCccc--ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCC
Confidence 788888888999999999877654221100 113678999999999999999999999999999999888887777777
Q ss_pred ceeEEEecCCCCeEE-EeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecC--------CcceE
Q 019482 156 SVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG--------DKALL 226 (340)
Q Consensus 156 ~i~~~~~~~~~~~l~-~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------~d~~i 226 (340)
.+.+++|+|+++.++ +++.|+.|++||+++++.+..+.. ...+.+++|+|+++. +++++ .|+.|
T Consensus 213 ~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~-----l~~~~~~~~~~~~~dg~i 285 (433)
T 3bws_A 213 WSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK--IGLPRGLLLSKDGKE-----LYIAQFSASNQESGGGRL 285 (433)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC--CSEEEEEEECTTSSE-----EEEEEEESCTTCSCCEEE
T ss_pred CeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC--CCCceEEEEcCCCCE-----EEEEECCCCccccCCCeE
Confidence 899999999999875 555799999999999988877764 345999999999986 33333 58899
Q ss_pred EEEECCCCcEEeeeeccCCCeeEEEECCCCCEE-EEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEE
Q 019482 227 AVYDISTWNKIGHKRLLRKPASVLSISLDGKYL-AMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLT 305 (340)
Q Consensus 227 ~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 305 (340)
++||+++++.+... .+...+..++|+|+++.+ ++++.|+.|++||+.+++....+. + ...+.+++|+|++++|++
T Consensus 286 ~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~-~~~~~~~~~s~dg~~l~~ 361 (433)
T 3bws_A 286 GIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP--V-FDKPNTIALSPDGKYLYV 361 (433)
T ss_dssp EEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE--C-SSSEEEEEECTTSSEEEE
T ss_pred EEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec--C-CCCCCeEEEcCCCCEEEE
Confidence 99999998876554 344578899999999755 556889999999999988876653 3 467999999999998888
Q ss_pred Eec---------------CCcEEEEEecCC
Q 019482 306 ASK---------------EWGAMITKLTVP 320 (340)
Q Consensus 306 ~~~---------------dg~i~iw~~~~~ 320 (340)
++. ||.|++|++...
T Consensus 362 ~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~ 391 (433)
T 3bws_A 362 SCRGPNHPTEGYLKKGLVLGKVYVIDTTTD 391 (433)
T ss_dssp EECCCCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred EecCCCccccccccccccceEEEEEECCCC
Confidence 876 579999998643
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=2.3e-32 Score=233.18 Aligned_cols=235 Identities=9% Similarity=0.087 Sum_probs=169.7
Q ss_pred cEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC--------CCCeEEEEecCCCEEEEE
Q 019482 20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--------SGDDFVCSTTNGGCKLFE 91 (340)
Q Consensus 20 ~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--------~~~~l~~~~~d~~i~iw~ 91 (340)
.++++|+ .|++|++|+.+..... .......+.+|.+.|++++|+| |+++||+++.|++|+|||
T Consensus 102 ~~las~~------~d~~v~lw~~~~~~~~---~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 102 LFLACVC------QDNTVRLIITKNETII---TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR 172 (393)
T ss_dssp EEEEEEE------TTSCEEEEEEETTEEE---EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred CEEEEEe------CCCcEEEEECCCCccc---eeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence 4566555 5777999998733211 1112234689999999999998 789999999999999999
Q ss_pred ecCceeeeeeccccCCCCCCCCCeEEEEEecCC-CeEEEccCCCcEEEEeCCCCceeecc--------------------
Q 019482 92 VYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDE-------------------- 150 (340)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~-------------------- 150 (340)
+.+......... |..+|.+++|+|++ .+|++++.|++|++||+++++.....
T Consensus 173 ~~~~~~~~~~~~-------~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 173 LTDEGPILAGYP-------LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp EETTEEEEEEEE-------CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred CCCCceeeeecC-------CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 988776555443 77899999999987 48999999999999999876543221
Q ss_pred -----ccCccceeEEEec-CCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCC-----------------CceeeEEEcc
Q 019482 151 -----PKAHKSVLDMDFS-LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD-----------------EKIELCRFSK 207 (340)
Q Consensus 151 -----~~~~~~i~~~~~~-~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-----------------~~v~~~~~~~ 207 (340)
..|...+.++.|+ |+++.+++++.|+++++||+..++....+..+.. .......|+|
T Consensus 246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHP 325 (393)
T ss_dssp ------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEcc
Confidence 2344578888887 6999999999999999999987765554432211 1122233444
Q ss_pred CCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEecc
Q 019482 208 DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK 274 (340)
Q Consensus 208 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 274 (340)
.....+ +++++.|+.|++||+.+++.......+..+|.+++|+|||++||+++.+| +.+|.+.
T Consensus 326 ~~~~~~---~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 326 RYMDYF---ATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp SCTTEE---EEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred CCCCEE---EEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 333211 57788999999999999998888888999999999999999999998766 7777654
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=3.3e-30 Score=219.86 Aligned_cols=285 Identities=12% Similarity=0.068 Sum_probs=213.5
Q ss_pred CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEE-
Q 019482 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS- 81 (340)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~- 81 (340)
.+..+.+++|+|+.. .+++.++ .++.|++|+.. .......+..|. .+.+++|+|++++|+++
T Consensus 30 ~~~~~~~~~~s~dg~--~l~~~~~------~d~~i~v~d~~--------~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~ 92 (391)
T 1l0q_A 30 VGSNPMGAVISPDGT--KVYVANA------HSNDVSIIDTA--------TNNVIATVPAGS-SPQGVAVSPDGKQVYVTN 92 (391)
T ss_dssp CSSSEEEEEECTTSS--EEEEEEG------GGTEEEEEETT--------TTEEEEEEECSS-SEEEEEECTTSSEEEEEE
T ss_pred cCCCcceEEECCCCC--EEEEECC------CCCeEEEEECC--------CCeEEEEEECCC-CccceEECCCCCEEEEEE
Confidence 345689999999543 3445443 45679999876 344445555554 89999999999988655
Q ss_pred ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeE-EEccCCCcEEEEeCCCCceeeccccCccceeEE
Q 019482 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (340)
Q Consensus 82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~ 160 (340)
..++.|++||+.+++....+. +...+.+++|+|++++| ++++.++.|++||+.+++....+.. +..+.++
T Consensus 93 ~~~~~v~v~d~~~~~~~~~~~--------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~ 163 (391)
T 1l0q_A 93 MASSTLSVIDTTSNTVAGTVK--------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSPKGI 163 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEE--------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSEEEE
T ss_pred CCCCEEEEEECCCCeEEEEEe--------CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec-CCCcceE
Confidence 466999999999887655443 33578999999999977 6888899999999999887766654 4567999
Q ss_pred EecCCCCeE-EEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecC---CcceEEEEECCCCcE
Q 019482 161 DFSLDSEFL-ATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG---DKALLAVYDISTWNK 236 (340)
Q Consensus 161 ~~~~~~~~l-~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~d~~i~i~d~~~~~~ 236 (340)
+|+|+++++ ++++.|+.|++||+++++.+..+.. ...+.+++|+|+++. ++.++ .++.|++||+++++.
T Consensus 164 ~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~-----l~~~~~~~~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 164 AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV--EAAPSGIAVNPEGTK-----AYVTNVDKYFNTVSMIDTGTNKI 236 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--SSEEEEEEECTTSSE-----EEEEEECSSCCEEEEEETTTTEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec--CCCccceEECCCCCE-----EEEEecCcCCCcEEEEECCCCeE
Confidence 999999887 6777899999999999988877753 356899999999987 34333 689999999999988
Q ss_pred EeeeeccCCCeeEEEECCCCCEE-EEeeCCCcEEEEeccCceEeecccccccc-------------cceeeEEEecCC--
Q 019482 237 IGHKRLLRKPASVLSISLDGKYL-AMGSKDGDICVVDVKKMEINHWSKRLHLG-------------TSIALVEFCPTQ-- 300 (340)
Q Consensus 237 ~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------------~~i~~~~~~~~~-- 300 (340)
+..+..+. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+...... .......|+.+.
T Consensus 237 ~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~ 315 (391)
T 1l0q_A 237 TARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITS 315 (391)
T ss_dssp EEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCS
T ss_pred EEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccccccccccccccc
Confidence 87777654 57899999999988 56688999999999998877655321100 001112233221
Q ss_pred --------eEEEEEecCCcEEEEEecCCC
Q 019482 301 --------RVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 301 --------~~l~~~~~dg~i~iw~~~~~~ 321 (340)
..+...+.|...++|++....
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~W~~~~g~ 344 (391)
T 1l0q_A 316 GYIFLSEPVQFTDLSKDATEWKWDFGDGS 344 (391)
T ss_dssp SEEETTCCEEEEECCBSCSEEEEECSSSC
T ss_pred ccccccceEEEEeCCCCceEEEEECCCCc
Confidence 346677778899999986543
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=3e-31 Score=214.43 Aligned_cols=243 Identities=11% Similarity=0.019 Sum_probs=165.5
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe--
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-- 82 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-- 82 (340)
.||..+.+.|+......+++|.-. .+.++...+.++...+. ....-.+|...|..+ ++++.+.++.
T Consensus 87 ~~v~~~~~~~~~~~~~~~~~~~~~-----~~~v~sla~spd~~~~~----~~l~s~g~~~~v~~l---~~g~lv~ss~~g 154 (356)
T 2w18_A 87 VPVLQIVPVPDVYNLVCVALGNLE-----IREIRALFCSSDDESEK----QVLLKSGNIKAVLGL---TKRRLVSSSGTL 154 (356)
T ss_dssp SCEEEECCCTTCCSCEEEEECSSS-----EEEEEEECC------CC----EEEEEEEEEEEEEEE---TTTEEEEEESSS
T ss_pred ceeEEEEEcCcccceeeeeecccc-----ccceEEEEECCCccccc----cEEEeCCCeEEEEec---CCCcEEEecccC
Confidence 477778888766555555555421 12244444444322211 111123444445443 4555555533
Q ss_pred cCCCEEEEEecC-ceeeeeeccccCCCCCCCCCeEEEEEec---CCCeEEEccCCCcEEEEeCCCCceeeccccCcc---
Q 019482 83 TNGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSV---DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK--- 155 (340)
Q Consensus 83 ~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--- 155 (340)
.|+.|++|++.. ++....... |...+..++|+| ++.+|++++.|++|++||+++++.+..+..++.
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~-------~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~ 227 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFL-------MPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQA 227 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEE-------CCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---C
T ss_pred CCCcEEEEEECCCCceeeeecc-------CCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCccee
Confidence 588999999944 544433322 667888999999 779999999999999999999999888876553
Q ss_pred ceeEEEecCCCCeE------------EEeeCCCeEEEEEccCCeeEEEee----cCCCCceeeEEEccCCCcceEEEEEe
Q 019482 156 SVLDMDFSLDSEFL------------ATTSTDGSARIWKTEDGVAWTFLT----RNSDEKIELCRFSKDGTKPFLFCTVQ 219 (340)
Q Consensus 156 ~i~~~~~~~~~~~l------------~~~~~d~~v~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~ 219 (340)
.+.+++|+|+|+++ ++|+.|++|++||..+++.+..+. ..+...+.+..++ +.. +++
T Consensus 228 ~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~-----lAS 300 (356)
T 2w18_A 228 SVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHC-----AAA 300 (356)
T ss_dssp CCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTE-----EEE
T ss_pred eeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCE-----EEE
Confidence 57778999999876 567889999999999998876652 2232233333333 443 688
Q ss_pred cCCcceEEEEECCCCcEEeeeeccCCCee-EEEECCCCCEEEEeeCCCcEEEEec
Q 019482 220 RGDKALLAVYDISTWNKIGHKRLLRKPAS-VLSISLDGKYLAMGSKDGDICVVDV 273 (340)
Q Consensus 220 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~dg~i~i~d~ 273 (340)
++.|++|++||+.+++.+..+.+|...+. .++|+|||++|++|+.|++|+|||+
T Consensus 301 gS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 301 ILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 88999999999999999999988876554 6899999999999999999999996
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=100.00 E-value=3.9e-31 Score=226.84 Aligned_cols=301 Identities=13% Similarity=0.065 Sum_probs=215.0
Q ss_pred eeEEeeeeecCCCccEEEEcCCCCc--ccCCCceEEEEe--CCCCCCcccCCeeeEEEecCCCCeeEEEEcC--------
Q 019482 6 TVTCGSWIKRPENVNLVVLGKSSRA--SSSPSVLEIFSF--DPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-------- 73 (340)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~--~~~~~~i~i~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------- 73 (340)
++...+|.+... .+++.|+-... +..+..+++|++ ... .......+.+|...+..+++++
T Consensus 64 ~~~~~~w~~~g~--~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 135 (415)
T 2hqs_A 64 EVQPAAWSALGI--DAVVVGQVTPNPDGSYNVAYQLVDTGGAPG------TVLAQNSYKVNKQWLRYAGHTASDEVFEKL 135 (415)
T ss_dssp GCCHHHHHTTTC--CEEEEEEEEECTTSCEEEEEEEEECSSSTT------CEEEEEEEEECGGGHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHhcCC--CEEEEEEEEECCCCeEEEEEEEEeCCCCCC------CEEeeeEEEcChhHHHHHHHHHHHHHHHHH
Confidence 566778887544 56666652110 112237999998 422 1223456888988888888875
Q ss_pred ------CCCeEEEEecC------CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC---cEEE
Q 019482 74 ------SGDDFVCSTTN------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG---HLRI 138 (340)
Q Consensus 74 ------~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~ 138 (340)
.+..++.++.+ +.|++||++... ...+. .|...+.+++|+|||++|++++.++ .|++
T Consensus 136 ~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~-------~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~ 207 (415)
T 2hqs_A 136 TGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVH-------RSPQPLMSPAWSPDGSKLAYVTFESGRSALVI 207 (415)
T ss_dssp HSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEE-------EESSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred cCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CEEEe-------CCCCcceeeEEcCCCCEEEEEEecCCCcEEEE
Confidence 25667766654 689999997543 23332 2567899999999999999998875 9999
Q ss_pred EeCCCCceeeccccCccceeEEEecCCCCeEE-EeeCCC--eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEE
Q 019482 139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (340)
Q Consensus 139 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (340)
||+.+++.. .+..+...+.+++|+|||+.|+ +++.|+ .|++||+++++. ..+.. +...+.+++|+|+|+.+
T Consensus 208 ~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~-~~~~~~~~~~spdg~~l--- 281 (415)
T 2hqs_A 208 QTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTD-GRSNNTEPTWFPDSQNL--- 281 (415)
T ss_dssp EETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCC-CSSCEEEEEECTTSSEE---
T ss_pred EECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcC-CCCcccceEECCCCCEE---
Confidence 999988765 4556667899999999999887 666655 499999988776 34443 44679999999999972
Q ss_pred EEEecCCcc--eEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCC---CcEEEEeccCceEeecccccccccc
Q 019482 216 CTVQRGDKA--LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLHLGTS 290 (340)
Q Consensus 216 ~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~ 290 (340)
++.+..++ .|.+||+.+++. ..+..+...+..++|+|+|++|++++.+ ..|++||+.+++..... .+ ..
T Consensus 282 -~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~--~~--~~ 355 (415)
T 2hqs_A 282 -AFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS--ST--FL 355 (415)
T ss_dssp -EEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECC--CS--SS
T ss_pred -EEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEec--CC--CC
Confidence 22233344 788889988764 3444556678899999999999988764 58999999988775432 23 27
Q ss_pred eeeEEEecCCeEEEEEecCC---cEEEEEecCCCCCCCCcccccccccccc
Q 019482 291 IALVEFCPTQRVVLTASKEW---GAMITKLTVPADWKGLSLPLLHSHSQNS 338 (340)
Q Consensus 291 i~~~~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~h~~~v~~ 338 (340)
+.+++|+|||++|++++.++ .+++|++... .......|.+.|.+
T Consensus 356 ~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~----~~~~l~~~~~~v~~ 402 (415)
T 2hqs_A 356 DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR----FKARLPATDGQVKF 402 (415)
T ss_dssp CEEEEECTTSSEEEEEEEETTEEEEEEEETTSC----CEEECCCSSSEEEE
T ss_pred cCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC----cEEEeeCCCCCCcC
Confidence 89999999999999988876 6788876522 23334445555544
No 128
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.97 E-value=1.1e-28 Score=226.91 Aligned_cols=290 Identities=10% Similarity=0.039 Sum_probs=201.1
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCC---CeeEEEEcCCCCeEEEE
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG---DPMTIAVNPSGDDFVCS 81 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~~~ 81 (340)
.++.+++|+|+. .+++. +.++.+.+|+.. .......+.+|.. .|.+++|||||++|+++
T Consensus 17 ~~~~~~~~spdg---~~~~~-------~~dg~i~~~d~~--------~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~ 78 (723)
T 1xfd_A 17 IHDPEAKWISDT---EFIYR-------EQKGTVRLWNVE--------TNTSTVLIEGKKIESLRAIRYEISPDREYALFS 78 (723)
T ss_dssp CCCCCCCBSSSS---CBCCC-------CSSSCEEEBCGG--------GCCCEEEECTTTTTTTTCSEEEECTTSSEEEEE
T ss_pred ccccccEEcCCC---cEEEE-------eCCCCEEEEECC--------CCcEEEEeccccccccccceEEECCCCCEEEEE
Confidence 457889999954 45552 245678888776 3333345566654 49999999999999998
Q ss_pred ecC---------CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeecccc
Q 019482 82 TTN---------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK 152 (340)
Q Consensus 82 ~~d---------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 152 (340)
+.+ +.+++||+.+++. ..+... ..+...+..++|||||++|+.++. +.|++||+.+++.......
T Consensus 79 ~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~----~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 79 YNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPP----EVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp ESCCCCSSSCCCSEEEEEESSSCCC-EECCCT----TCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred ecCccceeecceeeEEEEECCCCce-EeccCC----ccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecC
Confidence 764 6788999988764 222111 123445888999999999999875 7899999998876554443
Q ss_pred Cccce------------------eEEEecCCCCeEEEeeCCC----------------------------------eEEE
Q 019482 153 AHKSV------------------LDMDFSLDSEFLATTSTDG----------------------------------SARI 180 (340)
Q Consensus 153 ~~~~i------------------~~~~~~~~~~~l~~~~~d~----------------------------------~v~i 180 (340)
+...+ .+++|+|||+.|++++.|+ .|++
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~ 232 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHV 232 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEE
Confidence 33323 7899999999999887543 7999
Q ss_pred EEccCCeeEEEeecC-----CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeecc-CCCe----eEE
Q 019482 181 WKTEDGVAWTFLTRN-----SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-RKPA----SVL 250 (340)
Q Consensus 181 wd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i----~~~ 250 (340)
||+.+++....+..+ +...+..++|+|||+.++ ........+..|.+||+.+++.......+ ...+ ..+
T Consensus 233 ~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~-~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 311 (723)
T 1xfd_A 233 IGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAV-TWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEP 311 (723)
T ss_dssp EESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEE-EEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCC
T ss_pred EECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEE-EEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCc
Confidence 999988765555432 245688999999998521 11112235678999999998876554432 3333 378
Q ss_pred EECCCCCEEEEe--eCCC------cEEEEe-ccCceE--eecccccccccceee-EEEecCCeEEEEEecC---CcEEEE
Q 019482 251 SISLDGKYLAMG--SKDG------DICVVD-VKKMEI--NHWSKRLHLGTSIAL-VEFCPTQRVVLTASKE---WGAMIT 315 (340)
Q Consensus 251 ~~s~~~~~l~~~--~~dg------~i~i~d-~~~~~~--~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~d---g~i~iw 315 (340)
+|+|||+.|+.. ..++ .|.+|| ..+++. ...+...+ ..+.. ++|+|||+.|+..+.+ +.++||
T Consensus 312 ~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 389 (723)
T 1xfd_A 312 VFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD--WDVTKILAYDEKGNKIYFLSTEDLPRRRQLY 389 (723)
T ss_dssp EECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS--SCEEEEEEEETTTTEEEEEESSSCTTCCEEE
T ss_pred eEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCC--eEEEeeeEEcCCCCEEEEEEcCCCCcceEEE
Confidence 999999977754 4566 577777 344441 33332222 23444 6999999988766555 789999
Q ss_pred EecCCC
Q 019482 316 KLTVPA 321 (340)
Q Consensus 316 ~~~~~~ 321 (340)
+++...
T Consensus 390 ~~~~~~ 395 (723)
T 1xfd_A 390 SANTVG 395 (723)
T ss_dssp EECSST
T ss_pred EEeCCC
Confidence 998654
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.97 E-value=6.9e-28 Score=222.09 Aligned_cols=293 Identities=11% Similarity=0.031 Sum_probs=204.6
Q ss_pred CceeEEeeeeecCCCccEEEEcCC-CCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCC-------------------
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKS-SRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE------------------- 63 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~-~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~------------------- 63 (340)
...+.+++|+| ++..+++++. .+ ......|.+|+.+.. .....+..+.
T Consensus 36 ~~~~~~~~~Sp---dG~~la~~~~~d~-~~~~~~i~~~d~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (741)
T 2ecf_A 36 GPTLMKPKVAP---DGSRVTFLRGKDS-DRNQLDLWSYDIGSG--------QTRLLVDSKVVLPGTETLSDEEKARRERQ 103 (741)
T ss_dssp CCCCEEEEECT---TSSEEEEEECCSS-CTTEEEEEEEETTTC--------CEEEEECGGGTC-----------------
T ss_pred CCCCCCceEec---CCCEEEEEeccCC-CCcccEEEEEECCCC--------ceeEccchhhcccccccccchhhhhhhhh
Confidence 45689999999 4556666553 21 001125777776522 2222222222
Q ss_pred -----CCeeEEEEcCCCCeEEEEecCCCEEEEEecCce--eeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcE
Q 019482 64 -----GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA--TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL 136 (340)
Q Consensus 64 -----~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 136 (340)
..|.+++|+|||++|++++. +.|++||+.++. ....+. .+...+.+++|+|||++|++++ ++.|
T Consensus 104 ~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~-------~~~~~~~~~~~SPDG~~la~~~-~~~i 174 (741)
T 2ecf_A 104 RIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLT-------HGEGFATDAKLSPKGGFVSFIR-GRNL 174 (741)
T ss_dssp ---CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCC-------CSSSCEEEEEECTTSSEEEEEE-TTEE
T ss_pred hhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcc-------cCCcccccccCCCCCCEEEEEe-CCcE
Confidence 23889999999999999887 889999998762 122221 2557799999999999999887 5689
Q ss_pred EEEeCCCCceeeccccCccc----------------eeEEEecCCCCeEEEeeCCC------------------------
Q 019482 137 RIMHWPSLRIILDEPKAHKS----------------VLDMDFSLDSEFLATTSTDG------------------------ 176 (340)
Q Consensus 137 ~~~d~~~~~~~~~~~~~~~~----------------i~~~~~~~~~~~l~~~~~d~------------------------ 176 (340)
++||+.+++.......+... +..+.|+|||++|++++.|+
T Consensus 175 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~ 254 (741)
T 2ecf_A 175 WVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP 254 (741)
T ss_dssp EEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred EEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence 99999987765444333322 47899999999999988765
Q ss_pred ---------eEEEEEccC-CeeEEEeec-CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCC
Q 019482 177 ---------SARIWKTED-GVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK 245 (340)
Q Consensus 177 ---------~v~iwd~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 245 (340)
.|++||+.+ ++....... .+...+..++| |||+.+++...-....+..|++||+.+++....+..+..
T Consensus 255 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~ 333 (741)
T 2ecf_A 255 AAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSP 333 (741)
T ss_dssp BTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECS
T ss_pred CCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCC
Confidence 889999988 776544322 34567899999 999974332222334578999999999987666655443
Q ss_pred ----CeeEEEECCCCCEEEEeeCCCcEEEEecc-CceEeecccccccccceeeE-EEecCCeEEE-EEecCC--cEEEEE
Q 019482 246 ----PASVLSISLDGKYLAMGSKDGDICVVDVK-KMEINHWSKRLHLGTSIALV-EFCPTQRVVL-TASKEW--GAMITK 316 (340)
Q Consensus 246 ----~i~~~~~s~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~-~~~~dg--~i~iw~ 316 (340)
.+..++|+|||+++++++.||.++||.+. .++ ...+. .+ ...+..+ .|+||++.|+ +++.++ .++||+
T Consensus 334 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~-~~-~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 334 TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALT-HG-NWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESC-CS-SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeee-ec-ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 45689999999999999999988887765 333 44442 33 3567777 5999998765 455555 899999
Q ss_pred ecCCC
Q 019482 317 LTVPA 321 (340)
Q Consensus 317 ~~~~~ 321 (340)
++...
T Consensus 411 ~~~~g 415 (741)
T 2ecf_A 411 VPLQG 415 (741)
T ss_dssp EETTC
T ss_pred EEcCC
Confidence 97643
No 130
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.97 E-value=2.1e-28 Score=200.40 Aligned_cols=256 Identities=13% Similarity=0.019 Sum_probs=185.2
Q ss_pred ccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecC-ceeeeeeccccCCCC
Q 019482 31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYG-GATDINLLAKKMPPL 109 (340)
Q Consensus 31 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~ 109 (340)
.+.++.|.+|+.. ..... .+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.......
T Consensus 18 ~~~~~~i~~~d~~--------~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~------ 81 (297)
T 2ojh_A 18 GSMRSSIEIFNIR--------TRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG------ 81 (297)
T ss_dssp CCCCEEEEEEETT--------TTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT------
T ss_pred CCcceeEEEEeCC--------CCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc------
Confidence 3467789999876 22222 3556888999999999999999887 67899999988 654322211
Q ss_pred CCCCCeEEEEEecCCCeEEEcc--CCCcEEEE--eCCCCceeeccccCccceeEEEecCCCCeEE-EeeCCCeEEEEEcc
Q 019482 110 QDAGPQKCLSFSVDGSRFAAGG--VDGHLRIM--HWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTE 184 (340)
Q Consensus 110 ~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~~--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~v~iwd~~ 184 (340)
.+...+.+++|+|++++|++++ .++...+| ++.+++. ..+. ....+..++|+|+++.|+ +++.++.+++|+++
T Consensus 82 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~ 159 (297)
T 2ojh_A 82 FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMT-KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMD 159 (297)
T ss_dssp TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECC-SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred cccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEee-cCCCccceEECCCCCEEEEEECCCCceEEEEEE
Confidence 1336788999999999999988 33444555 5555442 2332 333588899999999877 77789999999964
Q ss_pred C-CeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC-CCcEEeeeeccCCCeeEEEECCCCCEEEEe
Q 019482 185 D-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRKPASVLSISLDGKYLAMG 262 (340)
Q Consensus 185 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 262 (340)
. +.....+. .+...+.+++|+|+++.+ ++.+..++.+.+|+++ .+..+..+..+...+..+.|+|+|++|+++
T Consensus 160 ~~~~~~~~~~-~~~~~~~~~~~s~dg~~l----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 234 (297)
T 2ojh_A 160 IDSGVETRLT-HGEGRNDGPDYSPDGRWI----YFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFV 234 (297)
T ss_dssp TTTCCEEECC-CSSSCEEEEEECTTSSEE----EEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEE
T ss_pred CCCCcceEcc-cCCCccccceECCCCCEE----EEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEE
Confidence 3 22333343 344578999999999862 3344467888899876 455556666677788999999999999988
Q ss_pred eCC-----------CcEEEEeccCceEeecccc-cccccceeeEEEecCCeEEEEEecCC
Q 019482 263 SKD-----------GDICVVDVKKMEINHWSKR-LHLGTSIALVEFCPTQRVVLTASKEW 310 (340)
Q Consensus 263 ~~d-----------g~i~i~d~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg 310 (340)
+.+ +.|++||+.+++....... .| ...+..++|+|++++|++++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 235 SYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGG-QGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEES-TTTSCSCCBCTTSSEEEEEEECC
T ss_pred EcCCCCCcccccCceEEEEEecCCCCceeeeccCCC-CcccccceECCCCCEEEEEEecc
Confidence 765 5699999988765433322 33 46899999999999998887763
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=3e-27 Score=208.73 Aligned_cols=278 Identities=10% Similarity=0.028 Sum_probs=207.7
Q ss_pred eeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEE
Q 019482 11 SWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLF 90 (340)
Q Consensus 11 ~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw 90 (340)
+++| +..+++++. .++.|.+|+.. +.....++..+.. +..++|+|+|++|++++.|+.|++|
T Consensus 144 ~~~p---~~~~~vs~~------~d~~V~v~D~~--------t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~ 205 (543)
T 1nir_A 144 DLDL---PNLFSVTLR------DAGQIALVDGD--------SKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMI 205 (543)
T ss_dssp CCCG---GGEEEEEEG------GGTEEEEEETT--------TCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEE
T ss_pred ccCC---CCEEEEEEc------CCCeEEEEECC--------CceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEE
Confidence 3566 335566544 46679999765 3344455663333 8999999999999999999999999
Q ss_pred Ee--cCceeeeeeccccCCCCCCCCCeEEEEEec----CCCeEEEccC-CCcEEEEeCCCCceeeccccC----------
Q 019482 91 EV--YGGATDINLLAKKMPPLQDAGPQKCLSFSV----DGSRFAAGGV-DGHLRIMHWPSLRIILDEPKA---------- 153 (340)
Q Consensus 91 ~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~---------- 153 (340)
|+ .+.+....+. +...+..++|+| ||+++++++. +++|.+||..+++.+..+..+
T Consensus 206 D~~~~t~~~~~~i~--------~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~ 277 (543)
T 1nir_A 206 DLWAKEPTKVAEIK--------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH 277 (543)
T ss_dssp ETTSSSCEEEEEEE--------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE
T ss_pred ECcCCCCcEEEEEe--------cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccc
Confidence 99 6666544432 335679999999 9999998884 899999999998877665432
Q ss_pred cc-ceeEEEecCCCCe-EEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEEC
Q 019482 154 HK-SVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231 (340)
Q Consensus 154 ~~-~i~~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~ 231 (340)
.. .+..+.++|++.. +++...++.|.+||..+.+.+..........+..+.|+|+++++ ++++..++.|.+||+
T Consensus 278 ~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l----~va~~~~~~v~v~D~ 353 (543)
T 1nir_A 278 PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYF----MTAANNSNKVAVIDS 353 (543)
T ss_dssp SCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEE----EEEEGGGTEEEEEET
T ss_pred cCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEE----EEEecCCCeEEEEEC
Confidence 22 6889999997664 56667889999999988665442121234568899999999963 345567889999999
Q ss_pred CCCcEEeeeec----cCCCeeEEEECCC-CCEEEEee-CCCcEEEEeccC-------ceEeecccccccccceeeEEEec
Q 019482 232 STWNKIGHKRL----LRKPASVLSISLD-GKYLAMGS-KDGDICVVDVKK-------MEINHWSKRLHLGTSIALVEFCP 298 (340)
Q Consensus 232 ~~~~~~~~~~~----~~~~i~~~~~s~~-~~~l~~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~~~i~~~~~~~ 298 (340)
.+++.+..+.. |.+....+ ++|+ +..++++. .|++|.+||+.+ .++++.+. .+ +..+..++|+|
T Consensus 354 ~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~-~~-g~~~~~v~~~p 430 (543)
T 1nir_A 354 KDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ-GQ-GGGSLFIKTHP 430 (543)
T ss_dssp TTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE-CS-CSCCCCEECCT
T ss_pred CCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE-cC-CCCceEEEcCC
Confidence 99998877764 33323333 4677 66666665 579999999988 77777764 44 45788999999
Q ss_pred CCeEEEEEe-------cCCcEEEEEecCCC
Q 019482 299 TQRVVLTAS-------KEWGAMITKLTVPA 321 (340)
Q Consensus 299 ~~~~l~~~~-------~dg~i~iw~~~~~~ 321 (340)
|+++|++++ .+++|.||++....
T Consensus 431 dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 431 KSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp TCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred CCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 999999987 37899999998655
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.96 E-value=1.1e-26 Score=193.48 Aligned_cols=267 Identities=8% Similarity=-0.005 Sum_probs=189.2
Q ss_pred CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec-CCCEEEEEecCcee-eeeeccccCCCCC
Q 019482 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGAT-DINLLAKKMPPLQ 110 (340)
Q Consensus 33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-d~~i~iw~~~~~~~-~~~~~~~~~~~~~ 110 (340)
.++.|.+|+.+ +......+..+...+ .++|+|+|+++++++. ++.|.+||+.+++. ......
T Consensus 18 ~~~~v~~~d~~--------~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~------- 81 (331)
T 3u4y_A 18 HLRRISFFSTD--------TLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE------- 81 (331)
T ss_dssp GGTEEEEEETT--------TCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE-------
T ss_pred CCCeEEEEeCc--------ccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc-------
Confidence 55679999876 333334445555667 9999999997776665 78999999988775 333221
Q ss_pred CCCCeEEEEEecCCCeEEEccCCC---cEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEe-eCCCe-EEEEEccC
Q 019482 111 DAGPQKCLSFSVDGSRFAAGGVDG---HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT-STDGS-ARIWKTED 185 (340)
Q Consensus 111 ~~~~v~~~~~~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~-v~iwd~~~ 185 (340)
+..+..+++|+|++++++++..++ .|.+||+.+++.+..+.. .....+++|+|+|++++++ ..++. +.+|++..
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 334444499999999999666553 899999998887765543 4456899999999866555 45578 99999875
Q ss_pred CeeEEEe---ecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE---EeeeeccCCCeeEEEECCCCCEE
Q 019482 186 GVAWTFL---TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---IGHKRLLRKPASVLSISLDGKYL 259 (340)
Q Consensus 186 ~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l 259 (340)
...+... .......+..++|+|+++++ +++...++.|.+||+.+++. +..+.. ...+..++|+|+|+++
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l----~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l 235 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFA----FVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTV 235 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEE----EEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEE
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEE----EEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEE
Confidence 4332111 11223458899999999863 45566789999999998887 665554 3567889999999977
Q ss_pred EEee-CCCcEEEEeccCceE--eeccccc-----ccccceeeEEEecCCeEEEEEe-cCCcEEEEEecCCC
Q 019482 260 AMGS-KDGDICVVDVKKMEI--NHWSKRL-----HLGTSIALVEFCPTQRVVLTAS-KEWGAMITKLTVPA 321 (340)
Q Consensus 260 ~~~~-~dg~i~i~d~~~~~~--~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~ 321 (340)
++++ .++.|.+||+.+++. +..+... ........++|+|||++|++++ .++.|.+|++..+.
T Consensus 236 ~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 236 YVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred EEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 7665 477899999998877 2221111 1011235689999999876555 46799999997543
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.96 E-value=1.5e-26 Score=193.47 Aligned_cols=268 Identities=11% Similarity=0.116 Sum_probs=187.9
Q ss_pred CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC-CCEEEEEec--CceeeeeeccccCCCC
Q 019482 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-GGCKLFEVY--GGATDINLLAKKMPPL 109 (340)
Q Consensus 33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-~~i~iw~~~--~~~~~~~~~~~~~~~~ 109 (340)
.++.|.+|+++.... ... .....|...+.+++|+|+|++|++++.+ +.|.+|++. +++.......
T Consensus 13 ~~~~v~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~------ 80 (343)
T 1ri6_A 13 ESQQIHVWNLNHEGA-----LTL-TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES------ 80 (343)
T ss_dssp GGTEEEEEEECTTSC-----EEE-EEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE------
T ss_pred CCCeEEEEEECCCCc-----EEE-eeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccc------
Confidence 567799999974221 111 2223477789999999999999988876 899999997 4432211110
Q ss_pred CCCCCeEEEEEecCCCeEEEcc-CCCcEEEEeCC---CCceeeccccCccceeEEEecCCCCeEEEee-CCCeEEEEEcc
Q 019482 110 QDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWP---SLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTE 184 (340)
Q Consensus 110 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~ 184 (340)
.....+..++|+|++++|++++ .++.|.+||+. +.+..... .....+.+++|+|+++++++++ .++.|++||+.
T Consensus 81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~ 159 (343)
T 1ri6_A 81 ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-EGLDGCHSANISPDNRTLWVPALKQDRICLFTVS 159 (343)
T ss_dssp ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE-CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred ccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc-cCCCCceEEEECCCCCEEEEecCCCCEEEEEEec
Confidence 1123678999999999876665 48889999994 33333333 3344688999999999888777 88999999998
Q ss_pred C-CeeEE----EeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC--CcE--Eeeeecc------CCCeeE
Q 019482 185 D-GVAWT----FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST--WNK--IGHKRLL------RKPASV 249 (340)
Q Consensus 185 ~-~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--~~~--~~~~~~~------~~~i~~ 249 (340)
+ ++... .+.......+..++|+|+++.+ ++++..++.|.+||++. ++. ....... ...+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l----~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
T 1ri6_A 160 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA----YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD 235 (343)
T ss_dssp TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE----EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE
T ss_pred CCCceeeecccccccCCCCCcceEEECCCCCEE----EEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccc
Confidence 7 54432 2333334468899999999863 34556789999999954 332 2222211 124568
Q ss_pred EEECCCCCEEEEe-eCCCcEEEEecc--C--ceEeecccccccccceeeEEEecCCeEEEEEe-cCCcEEEEEecCC
Q 019482 250 LSISLDGKYLAMG-SKDGDICVVDVK--K--MEINHWSKRLHLGTSIALVEFCPTQRVVLTAS-KEWGAMITKLTVP 320 (340)
Q Consensus 250 ~~~s~~~~~l~~~-~~dg~i~i~d~~--~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~ 320 (340)
++|+|+|++|+++ ..++.|.+||+. + .+.+..+. . ...+..++|+|+|++|++++ .++.+.+|+++..
T Consensus 236 i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~-~--~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~ 309 (343)
T 1ri6_A 236 IHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP-T--ETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGE 309 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE-C--SSSCCCEEECTTSSEEEEECTTTCEEEEEEEETT
T ss_pred eEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec-C--CCccceEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 9999999988755 478999999998 3 33333332 1 23488999999999888877 6899999988743
No 134
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.96 E-value=9.6e-26 Score=189.49 Aligned_cols=286 Identities=12% Similarity=0.068 Sum_probs=204.1
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEE-ec
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TT 83 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~~ 83 (340)
..+..++|+|+.. .+++..........++.|.+|+.. + ......+.. ...+..++|+|+|++++++ ..
T Consensus 41 ~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~v~~~d~~--~------~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~ 109 (353)
T 3vgz_A 41 KGAYEMAYSQQEN--ALWLATSQSRKLDKGGVVYRLDPV--T------LEVTQAIHN-DLKPFGATINNTTQTLWFGNTV 109 (353)
T ss_dssp SSEEEEEEETTTT--EEEEEECCCTTTEESEEEEEECTT--T------CCEEEEEEE-SSCCCSEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCC--EEEEEcCCCcCCCCCccEEEEcCC--C------CeEEEEEec-CCCcceEEECCCCCEEEEEecC
Confidence 3467889999543 233322211111125556666554 2 222233332 3457899999999966554 55
Q ss_pred CCCEEEEEecCceeeeeeccccCCC--CCCCCCeEEEEEecCCCeEEEcc--CCCcEEEEeCCCCceeeccccCccceeE
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPP--LQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMHWPSLRIILDEPKAHKSVLD 159 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~i~~ 159 (340)
++.|.+||..+++....+....... ......+.+++|+|++++++++. .++.|.+||+.+++....+..+...+.+
T Consensus 110 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 189 (353)
T 3vgz_A 110 NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTG 189 (353)
T ss_dssp TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCC
T ss_pred CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccce
Confidence 7899999999887655543321100 00112368899999999877765 4788999999998887766545556889
Q ss_pred EEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecC---CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE
Q 019482 160 MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (340)
Q Consensus 160 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 236 (340)
++|+|+++++++++.++.|.+||+.+++.+..+... ....+..++|+|+++.+ .++...++.|.+||..+++.
T Consensus 190 ~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l----~~~~~~~~~v~~~d~~~~~~ 265 (353)
T 3vgz_A 190 LALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRA----FITDSKAAEVLVVDTRNGNI 265 (353)
T ss_dssp CEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEE----EEEESSSSEEEEEETTTCCE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEE----EEEeCCCCEEEEEECCCCcE
Confidence 999999999999999999999999999988777642 23457789999999963 34455679999999999988
Q ss_pred EeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCC
Q 019482 237 IGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW 310 (340)
Q Consensus 237 ~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 310 (340)
+..+.... ...++|+|+|+++++++ .++.|.+||..+++.+..+.. ...+.+++|+|||++|+.+..++
T Consensus 266 ~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 266 LAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT---PTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC---CSEEEEEEECTTSCEEEEEEECC
T ss_pred EEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec---CCCCCeEEEcCCCCEEEEEEccc
Confidence 77766543 25699999999766665 689999999999988776543 34689999999999777766653
No 135
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=1e-26 Score=199.38 Aligned_cols=237 Identities=19% Similarity=0.157 Sum_probs=180.8
Q ss_pred CceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCC---CEEEEEecCceeeeeeccccCCCCCC
Q 019482 35 SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG---GCKLFEVYGGATDINLLAKKMPPLQD 111 (340)
Q Consensus 35 ~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~ 111 (340)
+.|.+|+++.. ....+.+|...+.+++|+|+|++|++++.++ .|++||+.+++... +. .+
T Consensus 159 ~~i~i~d~~g~---------~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~-------~~ 221 (415)
T 2hqs_A 159 YELRVSDYDGY---------NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VA-------SF 221 (415)
T ss_dssp EEEEEEETTSC---------SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EE-------CC
T ss_pred ceEEEEcCCCC---------CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-ee-------cC
Confidence 67888887621 1245667889999999999999999999875 89999999876532 22 25
Q ss_pred CCCeEEEEEecCCCeEE-EccCCCc--EEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeC-CC--eEEEEEccC
Q 019482 112 AGPQKCLSFSVDGSRFA-AGGVDGH--LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTED 185 (340)
Q Consensus 112 ~~~v~~~~~~~~~~~l~-~~~~dg~--i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~ 185 (340)
...+.+++|+|||++|+ +++.++. |++||+.+++. ..+..+...+.+++|+|||++|++++. ++ .|++||+.+
T Consensus 222 ~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~ 300 (415)
T 2hqs_A 222 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING 300 (415)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC
Confidence 56899999999999887 6665554 99999988775 456667778999999999999888875 44 688889887
Q ss_pred CeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCC---cceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEe
Q 019482 186 GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD---KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG 262 (340)
Q Consensus 186 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 262 (340)
++.. .+.. +...+.+++|+|+|+++ +.++. +..|.+||+.+++.. .+..+. .+.+++|+|+|++|+++
T Consensus 301 ~~~~-~l~~-~~~~~~~~~~spdG~~l-----~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~ 371 (415)
T 2hqs_A 301 GAPQ-RITW-EGSQNQDADVSSDGKFM-----VMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYS 371 (415)
T ss_dssp SCCE-ECCC-SSSEEEEEEECTTSSEE-----EEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEE
T ss_pred CCEE-EEec-CCCcccCeEECCCCCEE-----EEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEE
Confidence 7643 3332 34568899999999973 33322 468999999988764 344443 78999999999999998
Q ss_pred eCCC---cEEEEeccCceEeecccccccccceeeEEEecCCe
Q 019482 263 SKDG---DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (340)
Q Consensus 263 ~~dg---~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 301 (340)
+.++ .|++||+..+... .+ ..+ ...|.+++|+|...
T Consensus 372 s~~~~~~~l~~~d~~g~~~~-~l-~~~-~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 372 SSQGMGSVLNLVSTDGRFKA-RL-PAT-DGQVKFPAWSPYLH 410 (415)
T ss_dssp EEETTEEEEEEEETTSCCEE-EC-CCS-SSEEEEEEECCCCC
T ss_pred EcCCCccEEEEEECCCCcEE-Ee-eCC-CCCCcCCccccccc
Confidence 8877 7999999765543 33 234 56899999999643
No 136
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=1.8e-26 Score=203.85 Aligned_cols=294 Identities=6% Similarity=0.030 Sum_probs=214.1
Q ss_pred eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC----CCCeEEEE
Q 019482 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP----SGDDFVCS 81 (340)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~~~ 81 (340)
.+.+++|+|+ ++++++++ .++.|.+|+++.. +.....++. +...+..++|+| +|++++++
T Consensus 180 ~~~~v~~spd---g~~l~v~~------~d~~V~v~D~~~~------t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~ 243 (543)
T 1nir_A 180 AVHISRMSAS---GRYLLVIG------RDARIDMIDLWAK------EPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAG 243 (543)
T ss_dssp TEEEEEECTT---SCEEEEEE------TTSEEEEEETTSS------SCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEE
T ss_pred ccceEEECCC---CCEEEEEC------CCCeEEEEECcCC------CCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEE
Confidence 4788999994 44555554 3477999998422 233344555 345689999999 99999988
Q ss_pred ec-CCCEEEEEecCceeeeeeccccC----CCCCCCCCeEEEEEecCCC-eEEEccCCCcEEEEeCCCCceee-ccccCc
Q 019482 82 TT-NGGCKLFEVYGGATDINLLAKKM----PPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPSLRIIL-DEPKAH 154 (340)
Q Consensus 82 ~~-d~~i~iw~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~ 154 (340)
+. +++|.+||..+.+....+..... ..+.....+..+.++|++. ++++...++.|.+||+.+.+.+. ....+.
T Consensus 244 ~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~ 323 (543)
T 1nir_A 244 AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAA 323 (543)
T ss_dssp EEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECC
T ss_pred EccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccC
Confidence 85 79999999998877665543110 0011234789999999765 55667788999999998765433 122344
Q ss_pred cceeEEEecCCCCeEEEe-eCCCeEEEEEccCCeeEEEeecC---CCCceeeEEEccCCCcceEEEEEecC-CcceEEEE
Q 019482 155 KSVLDMDFSLDSEFLATT-STDGSARIWKTEDGVAWTFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRG-DKALLAVY 229 (340)
Q Consensus 155 ~~i~~~~~~~~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~-~d~~i~i~ 229 (340)
..+.++.|+|++++++++ ..+++|.+||.++++++..+... |.+....+ ++|++... ++++. .|++|.+|
T Consensus 324 ~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~----~~s~~~~d~~V~v~ 398 (543)
T 1nir_A 324 PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPV----WSTSHLGDGSISLI 398 (543)
T ss_dssp SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEE----EEEEBSSSSEEEEE
T ss_pred cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccE----EEeccCCCceEEEE
Confidence 567889999999987655 46889999999999998887632 22222222 46775442 34443 68999999
Q ss_pred ECCC-------CcEEeeeeccCCCeeEEEECCCCCEEEEee-------CCCcEEEEeccCceEe-eccc-------cccc
Q 019482 230 DIST-------WNKIGHKRLLRKPASVLSISLDGKYLAMGS-------KDGDICVVDVKKMEIN-HWSK-------RLHL 287 (340)
Q Consensus 230 d~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-------~dg~i~i~d~~~~~~~-~~~~-------~~~~ 287 (340)
|+.+ ++.++.+..+...+..++++|++++|++++ .+++|.+||+.+++.. ..+. ..+
T Consensus 399 d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~- 477 (543)
T 1nir_A 399 GTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG- 477 (543)
T ss_dssp ECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS-
T ss_pred EeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCC-
Confidence 9998 889999999888889999999999999987 2679999999988766 3221 122
Q ss_pred ccceeeEEEecCCeEEEEEe-----cCCcEEEEEecCCC
Q 019482 288 GTSIALVEFCPTQRVVLTAS-----KEWGAMITKLTVPA 321 (340)
Q Consensus 288 ~~~i~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~~ 321 (340)
...+..+.|+|+|+.++++. .|+.|.|||.....
T Consensus 478 ~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~ 516 (543)
T 1nir_A 478 AKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK 516 (543)
T ss_dssp CCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred CCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCce
Confidence 46899999999999888663 47999999987544
No 137
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.96 E-value=8.8e-26 Score=189.43 Aligned_cols=271 Identities=12% Similarity=0.120 Sum_probs=184.6
Q ss_pred CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec---CCCEEEEEecCceeeeeeccccCCCC
Q 019482 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT---NGGCKLFEVYGGATDINLLAKKMPPL 109 (340)
Q Consensus 33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~ 109 (340)
.++.+.+|.++.....+. ......+...+..++|+|+|+ |++++. ++.|++|++.+++........
T Consensus 14 ~~~~i~v~~~d~~tg~~~-----~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~----- 82 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLT-----NDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV----- 82 (347)
T ss_dssp SCCEEEEEEEETTTTEEE-----EEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE-----
T ss_pred CCCCEEEEEEcCCCCeEE-----EeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee-----
Confidence 456799999986544331 122334557788999999999 655554 578999999776532211100
Q ss_pred CCCCCeEEEEEecCCCeEEEcc-CCCcEEEEeCCC-Cc--eeecccc---------CccceeEEEecCCCCeEEEeeCCC
Q 019482 110 QDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPS-LR--IILDEPK---------AHKSVLDMDFSLDSEFLATTSTDG 176 (340)
Q Consensus 110 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~-~~--~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~ 176 (340)
.+...+..++|+|+|++|++++ .++.|.+|++.. +. .+..... ....+.+++|+|+++++++...++
T Consensus 83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~ 162 (347)
T 3hfq_A 83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD 162 (347)
T ss_dssp EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence 1345678999999999888877 678999999963 22 2222211 112478899999999666666788
Q ss_pred eEEEEEcc-CCeeEE--EeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC--CcE--EeeeeccC-----
Q 019482 177 SARIWKTE-DGVAWT--FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST--WNK--IGHKRLLR----- 244 (340)
Q Consensus 177 ~v~iwd~~-~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--~~~--~~~~~~~~----- 244 (340)
.|++|++. +++... .+.......+..++|+|+|+++ +++...++.+.+|++.. ++. +.......
T Consensus 163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l----~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 238 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYA----FLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTA 238 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEE----EEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCS
T ss_pred EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEE----EEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCC
Confidence 99999998 454322 2222233357889999999863 35567788999999874 442 22222222
Q ss_pred -CCeeEEEECCCCCEEEE-eeCCCcEEEEeccC-c--eEeecccccccccceeeEEEecCCeEEEEEecC-CcEEEEEec
Q 019482 245 -KPASVLSISLDGKYLAM-GSKDGDICVVDVKK-M--EINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-WGAMITKLT 318 (340)
Q Consensus 245 -~~i~~~~~s~~~~~l~~-~~~dg~i~i~d~~~-~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~iw~~~ 318 (340)
..+..++|+|||++|++ ...++.|.+|++.. + +.+..+. .+ ...+..++|+|||++|++++.+ +.+.+|+++
T Consensus 239 ~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~-~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 239 HNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS-TE-GDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE-CS-SSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe-cC-CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 34788999999998855 45689999999973 2 3333222 22 3468899999999988887764 899999886
Q ss_pred CC
Q 019482 319 VP 320 (340)
Q Consensus 319 ~~ 320 (340)
..
T Consensus 317 ~~ 318 (347)
T 3hfq_A 317 LT 318 (347)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 138
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.96 E-value=6e-26 Score=189.39 Aligned_cols=265 Identities=12% Similarity=-0.002 Sum_probs=193.7
Q ss_pred CCCceEEEEeCCCCCCcccCCeeeEEEecCC-C-CeeEEEEcCCCCeEE-EEecCCCEEEEEecCceeeeeeccccCCCC
Q 019482 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-G-DPMTIAVNPSGDDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPPL 109 (340)
Q Consensus 33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-~-~v~~~~~~~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 109 (340)
.++.|.+|+.. +......+.... . .+..++|+|+|++++ ++..++.|.+||+.+++....+..... .
T Consensus 9 ~~~~v~~~d~~--------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~--~ 78 (337)
T 1pby_B 9 RPDKLVVIDTE--------KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP--E 78 (337)
T ss_dssp TTTEEEEEETT--------TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT--T
T ss_pred CCCeEEEEECC--------CCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc--c
Confidence 45669999875 333333343222 2 588999999998765 455678999999988776554432110 0
Q ss_pred CCCCCeEEEEEecCCCeEEEcc------------CCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCe
Q 019482 110 QDAGPQKCLSFSVDGSRFAAGG------------VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGS 177 (340)
Q Consensus 110 ~~~~~v~~~~~~~~~~~l~~~~------------~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 177 (340)
.+...+.+++|+|++++++++. .++.|.+||+.+++....+.. ...+.+++|+|++++|+++ ++.
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~ 155 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRD 155 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSS
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCe
Confidence 0112567899999999988885 579999999998877655543 4467889999999988888 688
Q ss_pred EEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc-----------------------eEEEEECCCC
Q 019482 178 ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA-----------------------LLAVYDISTW 234 (340)
Q Consensus 178 v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~-----------------------~i~i~d~~~~ 234 (340)
|++||+++++.+..+..... ...+.|+|++..++ +.+..++ .|.+||+.++
T Consensus 156 i~~~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 229 (337)
T 1pby_B 156 LHVMDPEAGTLVEDKPIQSW--EAETYAQPDVLAVW----NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229 (337)
T ss_dssp EEEEETTTTEEEEEECSTTT--TTTTBCCCBCCCCC----CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred EEEEECCCCcEeeeeecccc--CCCceeCCCccEEe----eeccCCCceeeeeeccccccccccccccccceEEEeCCCC
Confidence 99999999988777654331 12447899998632 2222222 5789999998
Q ss_pred cEE-eeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEE
Q 019482 235 NKI-GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAM 313 (340)
Q Consensus 235 ~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 313 (340)
+.. ..+..+...+..++|+|+|++++++ ++.|++||+.+++....+.. ...+.+++|+|||++|++++.++.|.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~i~ 304 (337)
T 1pby_B 230 EMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL---PHSYYSVNVSTDGSTVWLGGALGDLA 304 (337)
T ss_dssp CEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC---SSCCCEEEECTTSCEEEEESBSSEEE
T ss_pred CceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC---CCceeeEEECCCCCEEEEEcCCCcEE
Confidence 764 2233445567889999999999988 78999999999888766543 24688999999999999999999999
Q ss_pred EEEecCCC
Q 019482 314 ITKLTVPA 321 (340)
Q Consensus 314 iw~~~~~~ 321 (340)
+|++....
T Consensus 305 v~d~~~~~ 312 (337)
T 1pby_B 305 AYDAETLE 312 (337)
T ss_dssp EEETTTCC
T ss_pred EEECcCCc
Confidence 99986544
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.95 E-value=4.1e-26 Score=209.14 Aligned_cols=285 Identities=13% Similarity=0.086 Sum_probs=199.9
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 84 (340)
.+|.+++|+|+ . .+++. .++.+.+|+.. .... ..+..+...+.+++|+|||++|+++ .+
T Consensus 82 ~~v~~~~~spd-~--~~~~~--------~~~~i~~~d~~--------~~~~-~~l~~~~~~~~~~~~SpdG~~la~~-~~ 140 (706)
T 2z3z_A 82 FPSFRTLDAGR-G--LVVLF--------TQGGLVGFDML--------ARKV-TYLFDTNEETASLDFSPVGDRVAYV-RN 140 (706)
T ss_dssp CCCEEEEETTT-T--EEEEE--------ETTEEEEEETT--------TTEE-EEEECCTTCCTTCEECTTSSEEEEE-ET
T ss_pred cCceeEEECCC-C--eEEEE--------ECCEEEEEECC--------CCce-EEccCCcccccCCcCCCCCCEEEEE-EC
Confidence 46999999995 2 34442 23568899875 2222 2345567789999999999999985 67
Q ss_pred CCEEEEEecC-----ceeeeeeccccCC-------CCCCCCCeEEEEEecCCCeEEEcc---------------------
Q 019482 85 GGCKLFEVYG-----GATDINLLAKKMP-------PLQDAGPQKCLSFSVDGSRFAAGG--------------------- 131 (340)
Q Consensus 85 ~~i~iw~~~~-----~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~--------------------- 131 (340)
+.|++|++.+ ++........... ..++...+.++.|+|||++|++++
T Consensus 141 ~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~ 220 (706)
T 2z3z_A 141 HNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAES 220 (706)
T ss_dssp TEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEE
T ss_pred CeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCce
Confidence 8899999987 5543221111000 000112358899999999999887
Q ss_pred ------------CCCcEEEEeCCCCceeeccc--cCccceeEEEecCCCCeEEEeeCCC-----eEEEEEccCCeeEEEe
Q 019482 132 ------------VDGHLRIMHWPSLRIILDEP--KAHKSVLDMDFSLDSEFLATTSTDG-----SARIWKTEDGVAWTFL 192 (340)
Q Consensus 132 ------------~dg~i~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~~~~~~~ 192 (340)
.+..|++||+.+++...... .+...+.+++|+|||+.|++++.++ .|++||+.+++....+
T Consensus 221 ~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~ 300 (706)
T 2z3z_A 221 KPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTL 300 (706)
T ss_dssp EEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEE
T ss_pred EEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEE
Confidence 44679999999887554332 3445789999999999999887665 8999999988443333
Q ss_pred e-cCCCC---ceeeEEEcc--CCCcceEEEEEecCCcceEEEEECC-CCcEEeeeeccCCCeeE-EEECCCCCEEEEeeC
Q 019482 193 T-RNSDE---KIELCRFSK--DGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRKPASV-LSISLDGKYLAMGSK 264 (340)
Q Consensus 193 ~-~~~~~---~v~~~~~~~--~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~ 264 (340)
. ..... .+..++|+| +|+. ++++..++.+++|+++ +++.+..+..+...+.. ++|+|+|+.|+.++.
T Consensus 301 ~~~~~~~~~~~~~~~~~sp~~dg~~-----l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~ 375 (706)
T 2z3z_A 301 FVETDKHYVEPLHPLTFLPGSNNQF-----IWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFEST 375 (706)
T ss_dssp EEEECSSCCCCCSCCEECTTCSSEE-----EEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEES
T ss_pred EEccCCCeECccCCceeecCCCCEE-----EEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEec
Confidence 2 22221 246789999 9985 5677778888888876 56666667767777776 799999998876654
Q ss_pred C-C----cEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC----CcEEEEEecC
Q 019482 265 D-G----DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE----WGAMITKLTV 319 (340)
Q Consensus 265 d-g----~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iw~~~~ 319 (340)
+ + .|..||+.+++... +. + ...+.+++|+|||++|+....+ +.+++|++..
T Consensus 376 ~~~~~~~~l~~~d~~~~~~~~-l~--~-~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 376 EASPLERHFYCIDIKGGKTKD-LT--P-ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp SSCTTCBEEEEEETTCCCCEE-SC--C-SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred CCCCceEEEEEEEcCCCCcee-cc--C-CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence 4 3 67777777765332 22 3 4568999999999988776544 4599998754
No 140
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=8.1e-27 Score=214.96 Aligned_cols=250 Identities=10% Similarity=0.031 Sum_probs=186.0
Q ss_pred CCCeeEEEEcCCCCeEEEEec-CC-----CEEEEEecCceeeeeeccccCC-----------------CCCCCCCeEEEE
Q 019482 63 EGDPMTIAVNPSGDDFVCSTT-NG-----GCKLFEVYGGATDINLLAKKMP-----------------PLQDAGPQKCLS 119 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~-d~-----~i~iw~~~~~~~~~~~~~~~~~-----------------~~~~~~~v~~~~ 119 (340)
...+.+++|+|||++|++++. |+ .|++||+.+++........... .......+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456999999999999999998 87 8999999887654433221100 000002378899
Q ss_pred EecCCCeEEEccCCCcEEEEeCCCCc--eeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCC
Q 019482 120 FSVDGSRFAAGGVDGHLRIMHWPSLR--IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD 197 (340)
Q Consensus 120 ~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~ 197 (340)
|+|||++|++++. +.|++||+.+++ ....+..+...+..++|+|||++|++++ ++.|++||+.+++.......+..
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence 9999999998886 899999998873 3445666667899999999999999987 56999999998876554432221
Q ss_pred C---------------ceeeEEEccCCCcceEEEEEecCCcc---------------------------------eEEEE
Q 019482 198 E---------------KIELCRFSKDGTKPFLFCTVQRGDKA---------------------------------LLAVY 229 (340)
Q Consensus 198 ~---------------~v~~~~~~~~~~~~~~~~~~~~~~d~---------------------------------~i~i~ 229 (340)
. .+..++|+|||+.+ +.++.|+ .|.+|
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l-----~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~ 268 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAI-----AYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI 268 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCE-----EEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred ceeccccceeeeeccccccceEECCCCCEE-----EEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence 1 14789999999983 3333232 78999
Q ss_pred ECCC-CcEEeeee--ccCCCeeEEEECCCCCEEEEeeC-----CCcEEEEeccCceEeeccccccccc---ceeeEEEec
Q 019482 230 DIST-WNKIGHKR--LLRKPASVLSISLDGKYLAMGSK-----DGDICVVDVKKMEINHWSKRLHLGT---SIALVEFCP 298 (340)
Q Consensus 230 d~~~-~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~---~i~~~~~~~ 298 (340)
|+.+ ++...... .+...+..++| |||++|++++. +..|++||+.+++....+. .+... .+..++|+|
T Consensus 269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~sp 346 (741)
T 2ecf_A 269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH-ETSPTWVPLHNSLRFLD 346 (741)
T ss_dssp CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEE-EECSSCCCCCSCCEECT
T ss_pred ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEE-cCCCCcCCcCCceEECC
Confidence 9988 77543332 35567899999 99999997754 5679999999988766543 22122 456899999
Q ss_pred CCeEEEEEecCCcEEEEEecCCC
Q 019482 299 TQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 299 ~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
||+++++++.||.++||.++...
T Consensus 347 dg~~~~~~~~~g~~~l~~~~~~~ 369 (741)
T 2ecf_A 347 DGSILWSSERTGFQHLYRIDSKG 369 (741)
T ss_dssp TSCEEEEECTTSSCEEEEECSSS
T ss_pred CCeEEEEecCCCccEEEEEcCCC
Confidence 99999999999999999987543
No 141
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.95 E-value=1.3e-24 Score=183.30 Aligned_cols=280 Identities=11% Similarity=0.104 Sum_probs=187.7
Q ss_pred cEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC----CCEEEEEecCc
Q 019482 20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN----GGCKLFEVYGG 95 (340)
Q Consensus 20 ~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d----~~i~iw~~~~~ 95 (340)
..+..|+... +.++.|.+|.++.....+. ..... +...+..++|+|+|++|++++.+ +.+.+|+++..
T Consensus 14 ~~~~vg~y~~--~~~~~i~~~~~d~~~g~~~----~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~ 85 (361)
T 3scy_A 14 LTMLVGTYTS--GNSKGIYTFRFNEETGESL----PLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKE 85 (361)
T ss_dssp EEEEEEECCS--SSCCEEEEEEEETTTCCEE----EEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETT
T ss_pred eEEEEEeccC--CCCCCEEEEEEeCCCCCEE----Eeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCC
Confidence 3445555432 3567899999987654431 11122 66788899999999999998875 78999999763
Q ss_pred --eeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc-CCCcEEEEeCCCCceeeccc--------------cCcccee
Q 019482 96 --ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDEP--------------KAHKSVL 158 (340)
Q Consensus 96 --~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~--------------~~~~~i~ 158 (340)
+.. .+.... .+...+..+++ ++++|++++ .++.|.+|++.....+.... .+...+.
T Consensus 86 ~g~~~-~~~~~~----~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~ 158 (361)
T 3scy_A 86 KGTLH-LLNTQK----TMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLH 158 (361)
T ss_dssp TTEEE-EEEEEE----CSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEE
T ss_pred CCcEE-EeeEec----cCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcce
Confidence 321 111110 12345667777 777776665 57899999997543332211 0112357
Q ss_pred EEEecCCCCeEEEee-CCCeEEEEEccCCee------E------EEeecCCCCceeeEEEccCCCcceEEEEEecCCcce
Q 019482 159 DMDFSLDSEFLATTS-TDGSARIWKTEDGVA------W------TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225 (340)
Q Consensus 159 ~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~------~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~ 225 (340)
+++|+|+|+++++++ .++.|++|++..... + ..........+..++|+|+|+.+ .++...++.
T Consensus 159 ~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l----~v~~~~~~~ 234 (361)
T 3scy_A 159 CVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFA----YLINEIGGT 234 (361)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEE----EEEETTTCE
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEE----EEEcCCCCe
Confidence 899999999766555 578999999875431 1 22222334467899999999862 344457899
Q ss_pred EEEEECCCCcEE--eeeec---cCCCeeEEEECCCCCEEEEeeCC--CcEEEEecc--CceE--eecccccccccceeeE
Q 019482 226 LAVYDISTWNKI--GHKRL---LRKPASVLSISLDGKYLAMGSKD--GDICVVDVK--KMEI--NHWSKRLHLGTSIALV 294 (340)
Q Consensus 226 i~i~d~~~~~~~--~~~~~---~~~~i~~~~~s~~~~~l~~~~~d--g~i~i~d~~--~~~~--~~~~~~~~~~~~i~~~ 294 (340)
|.+||+.+++.. ..... +......++|+|||++|+++..+ +.|.+|++. +++. +..+. . +..+..+
T Consensus 235 v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~--~-g~~~~~~ 311 (361)
T 3scy_A 235 VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL--T-GIHPRNF 311 (361)
T ss_dssp EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE--C-SSCCCEE
T ss_pred EEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec--C-CCCCceE
Confidence 999999876542 22222 22346799999999999777654 889999995 3442 22222 1 3568899
Q ss_pred EEecCCeEEEEEe-cCCcEEEEEecCCC
Q 019482 295 EFCPTQRVVLTAS-KEWGAMITKLTVPA 321 (340)
Q Consensus 295 ~~~~~~~~l~~~~-~dg~i~iw~~~~~~ 321 (340)
+|+|||++|++++ .++.+.+|+++...
T Consensus 312 ~~spdg~~l~~~~~~~~~v~v~~~d~~~ 339 (361)
T 3scy_A 312 IITPNGKYLLVACRDTNVIQIFERDQAT 339 (361)
T ss_dssp EECTTSCEEEEEETTTTEEEEEEECTTT
T ss_pred EECCCCCEEEEEECCCCCEEEEEEECCC
Confidence 9999999888877 67899999887543
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=2.3e-24 Score=180.25 Aligned_cols=274 Identities=13% Similarity=0.147 Sum_probs=179.7
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
...+.+++|+|+ +..+++++. .++.+.+|+++...... .....+..+. .+..++|+|+|++|++++.
T Consensus 37 ~~~~~~~~~spd---g~~l~~~~~-----~~~~v~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~ 103 (343)
T 1ri6_A 37 PGQVQPMVVSPD---KRYLYVGVR-----PEFRVLAYRIAPDDGAL----TFAAESALPG-SLTHISTDHQGQFVFVGSY 103 (343)
T ss_dssp SSCCCCEEECTT---SSEEEEEET-----TTTEEEEEEECTTTCCE----EEEEEEECSS-CCSEEEECTTSSEEEEEET
T ss_pred CCCCceEEECCC---CCEEEEeec-----CCCeEEEEEecCCCCce----eeccccccCC-CCcEEEEcCCCCEEEEEec
Confidence 456778999994 344444332 23679999998543322 1222344333 7899999999998877665
Q ss_pred -CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc-CCCcEEEEeCCC-Cceee----cccc-Ccc
Q 019482 84 -NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPS-LRIIL----DEPK-AHK 155 (340)
Q Consensus 84 -d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~-~~~~~----~~~~-~~~ 155 (340)
++.|.+||+..+........ ......+.+++|+|+++++++++ .++.|.+||+.+ ++... .... ...
T Consensus 104 ~~~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 178 (343)
T 1ri6_A 104 NAGNVSVTRLEDGLPVGVVDV-----VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGA 178 (343)
T ss_dssp TTTEEEEEEEETTEEEEEEEE-----ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTC
T ss_pred CCCeEEEEECCCCcccccccc-----ccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCC
Confidence 78899999953321111111 11334588899999999888776 889999999987 54321 1222 234
Q ss_pred ceeEEEecCCCCeEEEee-CCCeEEEEEccC--Cee--EEEee---cCC--CCceeeEEEccCCCcceEEEEEecCCcce
Q 019482 156 SVLDMDFSLDSEFLATTS-TDGSARIWKTED--GVA--WTFLT---RNS--DEKIELCRFSKDGTKPFLFCTVQRGDKAL 225 (340)
Q Consensus 156 ~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~--~~~--~~~~~---~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~d~~ 225 (340)
.+..++|+|+++++++++ .++.+.+|+++. ++. ..... ..+ ...+..++|+|+++.+ +++...++.
T Consensus 179 ~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l----~v~~~~~~~ 254 (343)
T 1ri6_A 179 GPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL----YACDRTASL 254 (343)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE----EEEETTTTE
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEE----EEEecCCCE
Confidence 678899999999765554 789999999953 332 22222 111 1246689999999863 345667899
Q ss_pred EEEEECC--C--CcEEeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEec--cCceEeecccccccccceeeEEEec
Q 019482 226 LAVYDIS--T--WNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDV--KKMEINHWSKRLHLGTSIALVEFCP 298 (340)
Q Consensus 226 i~i~d~~--~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~--~~~~~~~~~~~~~~~~~i~~~~~~~ 298 (340)
|.+||+. + .+.+..+..... +..++|+|+|++|++++ .++.|.+|++ .+++..... ....+....+++|.|
T Consensus 255 i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~-~~~~g~~p~~i~~~~ 332 (343)
T 1ri6_A 255 ITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKG-RYAVGQGPMWVVVNA 332 (343)
T ss_dssp EEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEE-EEECSSSCCEEEEEE
T ss_pred EEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcc-ccccCCCCeeEEEEc
Confidence 9999998 3 234444444443 88999999999888887 5799999955 455433221 112134577888887
Q ss_pred CCe
Q 019482 299 TQR 301 (340)
Q Consensus 299 ~~~ 301 (340)
+.+
T Consensus 333 ~~~ 335 (343)
T 1ri6_A 333 HEG 335 (343)
T ss_dssp EC-
T ss_pred ccC
Confidence 643
No 143
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.95 E-value=4.5e-25 Score=210.09 Aligned_cols=281 Identities=14% Similarity=0.098 Sum_probs=211.6
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
...+.++.|+++ .+++.+. .++.+.+|.++..+... ..+..|. .+...+|+|+|++|+++.
T Consensus 203 ~~~v~~~~~s~d----~l~~~~~------~dg~~~l~~~~~~g~~~-------~~l~~~~-~~~~~~~SpDG~~la~~~- 263 (1045)
T 1k32_A 203 STHVSSPVIVGH----RIYFITD------IDGFGQIYSTDLDGKDL-------RKHTSFT-DYYPRHLNTDGRRILFSK- 263 (1045)
T ss_dssp SSCCEEEEEETT----EEEEEEC------TTSSCEEEEEETTSCSC-------EECCCCC-SSCEEEEEESSSCEEEEE-
T ss_pred CCcccceEEeCC----EEEEEEe------ccCceEEEEEeCCCCcc-------eEecCCC-CcceeeEcCCCCEEEEEe-
Confidence 456788899873 3444433 34568999987544322 2234444 467889999999998874
Q ss_pred CCCEEEEEecCceeeeeecccc----CCCCCCCCCeEEEEEe-cCCCeEEEccCCCcEEEEeCCCCceeeccccCcc-ce
Q 019482 84 NGGCKLFEVYGGATDINLLAKK----MPPLQDAGPQKCLSFS-VDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SV 157 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~i 157 (340)
++.|++|++...... .+.... .....+...+.+++|+ |||++|++++ ++.|.+|++.+++... +..+.. .+
T Consensus 264 ~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~ 340 (1045)
T 1k32_A 264 GGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRY 340 (1045)
T ss_dssp TTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEE
T ss_pred CCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceE
Confidence 788999998443322 221100 0001134468999999 9999998887 7899999998776543 555666 89
Q ss_pred eEEEecCCCCeEEEeeCCCeEE-EEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE
Q 019482 158 LDMDFSLDSEFLATTSTDGSAR-IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (340)
Q Consensus 158 ~~~~~~~~~~~l~~~~~d~~v~-iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 236 (340)
..++|+ ||+.|++++.+..+. +||+..++.. .+. .+...+..++|+|+|+. ++.++.++.|++||+.+++.
T Consensus 341 ~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~-~~~~~~~~~~~SpDG~~-----la~~~~~~~v~~~d~~tg~~ 412 (1045)
T 1k32_A 341 VRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFE-ENLGNVFAMGVDRNGKF-----AVVANDRFEIMTVDLETGKP 412 (1045)
T ss_dssp EEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECC-CCCCSEEEEEECTTSSE-----EEEEETTSEEEEEETTTCCE
T ss_pred EeeeEc-CCCeEEEEECCCceEEEEECCCCCce-Eec-CCccceeeeEECCCCCE-----EEEECCCCeEEEEECCCCce
Confidence 999999 999999999888898 9999876654 344 45567999999999997 66777889999999999988
Q ss_pred EeeeeccCCCeeEEEECCCCCEEEEeeCCC----------cEEEEeccCceEeecccccccccceeeEEEecCCeEEEEE
Q 019482 237 IGHKRLLRKPASVLSISLDGKYLAMGSKDG----------DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA 306 (340)
Q Consensus 237 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----------~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 306 (340)
......+...+..++|+|||++|++++.++ .|++||+.+++... + ..| ...+..++|+|||++|+++
T Consensus 413 ~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~-l-~~~-~~~~~~~~~spdG~~l~~~ 489 (1045)
T 1k32_A 413 TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-A-TTE-NSHDYAPAFDADSKNLYYL 489 (1045)
T ss_dssp EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-C-SCS-SSBEEEEEECTTSCEEEEE
T ss_pred EEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEE-e-eCC-CcccCCceEcCCCCEEEEE
Confidence 777768888899999999999999887654 89999999887433 3 233 4568889999999999999
Q ss_pred ecCCcEEEEEe
Q 019482 307 SKEWGAMITKL 317 (340)
Q Consensus 307 ~~dg~i~iw~~ 317 (340)
+.++...+|+.
T Consensus 490 s~~~~~~~~~~ 500 (1045)
T 1k32_A 490 SYRSLDPSPDR 500 (1045)
T ss_dssp ESCCCCCEECS
T ss_pred ecccCCcCcch
Confidence 98888777764
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=2.7e-24 Score=180.59 Aligned_cols=240 Identities=8% Similarity=-0.005 Sum_probs=186.8
Q ss_pred CCCeeEEEEcCCCCeEEEEec-------CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEE-EccCCC
Q 019482 63 EGDPMTIAVNPSGDDFVCSTT-------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDG 134 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~-------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg 134 (340)
...+..++|+|+|+++++++. ++.|.+||..+++....+.. ...+..++|+|++++++ +...++
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--------~~~~~~~~~s~dg~~l~v~~~~~~ 111 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN--------DLKPFGATINNTTQTLWFGNTVNS 111 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE--------SSCCCSEEEETTTTEEEEEETTTT
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec--------CCCcceEEECCCCCEEEEEecCCC
Confidence 356889999999998888774 45799999998876555432 23467899999999554 455679
Q ss_pred cEEEEeCCCCceeeccccCcc---------ceeEEEecCCCCeEEEee--CCCeEEEEEccCCeeEEEeecCCCCceeeE
Q 019482 135 HLRIMHWPSLRIILDEPKAHK---------SVLDMDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELC 203 (340)
Q Consensus 135 ~i~~~d~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~ 203 (340)
.|.+||+.+++....+..+.. .+.+++|+|+++++++++ .++.|.+||.++++.+..+.. ....+..+
T Consensus 112 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~ 190 (353)
T 3vgz_A 112 AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN-TGKMSTGL 190 (353)
T ss_dssp EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC-CCTTCCCC
T ss_pred EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC-CCCccceE
Confidence 999999999887666554332 268899999999877766 478999999999998887752 23358899
Q ss_pred EEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec----cCCCeeEEEECCCCCEEEEeeC-CCcEEEEeccCceE
Q 019482 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL----LRKPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEI 278 (340)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~ 278 (340)
+|+|+++. ++.+..++.|.+||..+++.+..+.. +...+..++|+|+|+++++++. ++.|.+||+.+++.
T Consensus 191 ~~s~dg~~-----l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 265 (353)
T 3vgz_A 191 ALDSEGKR-----LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI 265 (353)
T ss_dssp EEETTTTE-----EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE
T ss_pred EECCCCCE-----EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 99999997 56667789999999999988776654 3445778999999998877765 48999999999888
Q ss_pred eecccccccccceeeEEEecCCeEEEEE-ecCCcEEEEEecCC
Q 019482 279 NHWSKRLHLGTSIALVEFCPTQRVVLTA-SKEWGAMITKLTVP 320 (340)
Q Consensus 279 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~ 320 (340)
...+.... ...++|+|++++++.+ ..++.|.+|+....
T Consensus 266 ~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 266 LAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp EEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred EEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 77664322 3679999999865554 47899999998643
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.94 E-value=3.5e-25 Score=203.02 Aligned_cols=239 Identities=14% Similarity=0.050 Sum_probs=172.1
Q ss_pred CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC
Q 019482 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS 143 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 143 (340)
..|.+++|+|| ..++.+. ++.+++||+.+++..... .+...+.+++|+|||++|+++ .++.|++||+.+
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~--------~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~ 150 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLF--------DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGK 150 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEE--------CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEcc--------CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCc
Confidence 56999999999 6666554 588999999887643322 134567789999999999985 689999999988
Q ss_pred -----CceeeccccCccc--------------eeEEEecCCCCeEEEee-------------------------------
Q 019482 144 -----LRIILDEPKAHKS--------------VLDMDFSLDSEFLATTS------------------------------- 173 (340)
Q Consensus 144 -----~~~~~~~~~~~~~--------------i~~~~~~~~~~~l~~~~------------------------------- 173 (340)
++.......+... +.++.|+|||++|++++
T Consensus 151 ~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~ 230 (706)
T 2z3z_A 151 LGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT 230 (706)
T ss_dssp TTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTS
T ss_pred ccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCC
Confidence 7665444333332 48899999999999987
Q ss_pred --CCCeEEEEEccCCeeEEEeec-CCCCceeeEEEccCCCcceEEEEEecCCc-----ceEEEEECCCCcEEeeee-c-c
Q 019482 174 --TDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDK-----ALLAVYDISTWNKIGHKR-L-L 243 (340)
Q Consensus 174 --~d~~v~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~~~~~-~-~ 243 (340)
.+..|++||+.+++....... .+...+..++|+|||+.+ +.++.+ ..|.+||+.+++....+. . .
T Consensus 231 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l-----~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~ 305 (706)
T 2z3z_A 231 PSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENIL-----YVAEVNRAQNECKVNAYDAETGRFVRTLFVETD 305 (706)
T ss_dssp CCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEE-----EEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC
T ss_pred CCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEE-----EEEEeCCCCCeeEEEEEECCCCceeeEEEEccC
Confidence 446899999998876544332 344568999999999973 332223 489999999984333332 1 2
Q ss_pred CC---CeeEEEECC--CCCEEEEeeCCCcEEEEecc-CceEeecccccccccceee-EEEecCCeEEEEEecC-C--cEE
Q 019482 244 RK---PASVLSISL--DGKYLAMGSKDGDICVVDVK-KMEINHWSKRLHLGTSIAL-VEFCPTQRVVLTASKE-W--GAM 313 (340)
Q Consensus 244 ~~---~i~~~~~s~--~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~d-g--~i~ 313 (340)
.. .+..+.|+| ||+++++++.|+.++||++. +++.+..+. .+ ...+.. ++|+||++.|+.++.+ + .+.
T Consensus 306 ~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~-~~-~~~v~~~~~~spdg~~l~~~~~~~~~~~~~ 383 (706)
T 2z3z_A 306 KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT-KG-EWEVTNFAGFDPKGTRLYFESTEASPLERH 383 (706)
T ss_dssp SSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC-CS-SSCEEEEEEECTTSSEEEEEESSSCTTCBE
T ss_pred CCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC-CC-CeEEEeeeEEcCCCCEEEEEecCCCCceEE
Confidence 21 246789999 99999999999999999876 455554443 23 345766 7999999877665554 4 366
Q ss_pred EEEecCC
Q 019482 314 ITKLTVP 320 (340)
Q Consensus 314 iw~~~~~ 320 (340)
||.++..
T Consensus 384 l~~~d~~ 390 (706)
T 2z3z_A 384 FYCIDIK 390 (706)
T ss_dssp EEEEETT
T ss_pred EEEEEcC
Confidence 7766543
No 146
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.94 E-value=1.6e-24 Score=194.30 Aligned_cols=269 Identities=11% Similarity=0.021 Sum_probs=190.4
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCC-CCeeEEEEcCCCCeEEEEec
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~ 83 (340)
.+|++++|+| +++.+|+++. .++.++||.++ .... ..+..|. ..+..++|+|| +.+++++.
T Consensus 22 ~~~~~~~~~~---DG~~la~~s~-----~~g~~~lw~~~--------~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~ 83 (582)
T 3o4h_A 22 VEKYSLQGVV---DGDKLLVVGF-----SEGSVNAYLYD--------GGET-VKLNREPINSVLDPHYGVG-RVILVRDV 83 (582)
T ss_dssp SCEEEEEEEE---TTTEEEEEEE-----ETTEEEEEEEE--------TTEE-EECCSSCCSEECEECTTCS-EEEEEEEC
T ss_pred cchheeecCC---CCCeEEEEEc-----cCCceeEEEEc--------CCCc-EeeecccccccccccCCCC-eEEEEecc
Confidence 5799999999 4556665542 35679999974 2222 2344444 68999999999 77776665
Q ss_pred ---CCCEEEEEecC--ceeeeeeccccCCCCCCCCCeEEEEEecCCCe-EEEccCCCcEEEEeCCCCceeeccccCccce
Q 019482 84 ---NGGCKLFEVYG--GATDINLLAKKMPPLQDAGPQKCLSFSVDGSR-FAAGGVDGHLRIMHWPSLRIILDEPKAHKSV 157 (340)
Q Consensus 84 ---d~~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i 157 (340)
+...++|.+.. ......+. ....+...+|+|+++. +++...++.+.+||+.+++..... .+..
T Consensus 84 ~~g~~~~~l~~~~~~~~g~~~~l~--------~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~-~~~~-- 152 (582)
T 3o4h_A 84 SKGAEQHALFKVNTSRPGEEQRLE--------AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA-RLPG-- 152 (582)
T ss_dssp STTSCCEEEEEEETTSTTCCEECT--------TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE-EESS--
T ss_pred CCCCcceEEEEEeccCCCcccccc--------CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee-cCCC--
Confidence 45567776654 22222221 1223456788998863 333334445669999887655433 2322
Q ss_pred eEEEecCCCCeEEEeeCC----CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc--eEEEEEC
Q 019482 158 LDMDFSLDSEFLATTSTD----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDI 231 (340)
Q Consensus 158 ~~~~~~~~~~~l~~~~~d----~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~ 231 (340)
.+++|+|||++|++++.+ ..|++||+.+++.. .+. .+...+..++|+|||+. ++++..++ .|++||+
T Consensus 153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~-~~~~~~~~~~~SpDG~~-----l~~~~~~~~~~i~~~d~ 225 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFD-SGEGSFSSASISPGMKV-----TAGLETAREARLVTVDP 225 (582)
T ss_dssp CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EEC-CSSCEEEEEEECTTSCE-----EEEEECSSCEEEEEECT
T ss_pred ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Eee-cCCCccccceECCCCCE-----EEEccCCCeeEEEEEcC
Confidence 789999999999988877 78999999888765 444 34567899999999997 44556666 8999999
Q ss_pred CCCcEEeeeeccCCCeeEEE--------ECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEE
Q 019482 232 STWNKIGHKRLLRKPASVLS--------ISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVV 303 (340)
Q Consensus 232 ~~~~~~~~~~~~~~~i~~~~--------~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 303 (340)
.+++.. .+..+...+..+. |+|||.++++++.|+.+++|++ ++.... . ...+.+++|+ +++++
T Consensus 226 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~----~-~~~v~~~~~s-dg~~l 296 (582)
T 3o4h_A 226 RDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA----P-QGNHGRVVLW-RGKLV 296 (582)
T ss_dssp TTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC----C-SSEEEEEEEE-TTEEE
T ss_pred CCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc----C-CCceEEEEec-CCEEE
Confidence 998876 6666666666666 9999999999999999999999 665542 1 3568899999 99999
Q ss_pred EEEecCCc-EEEEEec
Q 019482 304 LTASKEWG-AMITKLT 318 (340)
Q Consensus 304 ~~~~~dg~-i~iw~~~ 318 (340)
++++.+.. -.+|.++
T Consensus 297 ~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 297 TSHTSLSTPPRIVSLP 312 (582)
T ss_dssp EEEEETTEEEEEEEET
T ss_pred EEEcCCCCCCeEEEEc
Confidence 98887744 3444444
No 147
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.93 E-value=3.3e-24 Score=179.73 Aligned_cols=233 Identities=12% Similarity=0.047 Sum_probs=175.9
Q ss_pred EEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEE-EccCCCcEEEEeCCCCce
Q 019482 68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRIMHWPSLRI 146 (340)
Q Consensus 68 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~~~ 146 (340)
.+++++++.++++++.++.|++||+.+++....+... ....+..++|+|++++++ +...++.|.+||+.+++.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~------~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~ 77 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP------DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN 77 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECS------SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecC------CCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE
Confidence 4567888889999999999999999988765554321 112567899999998654 555789999999998887
Q ss_pred eeccccCc------cceeEEEecCCCCeEEEeeCC------------CeEEEEEccCCee---EEEeecCCCCceeeEEE
Q 019482 147 ILDEPKAH------KSVLDMDFSLDSEFLATTSTD------------GSARIWKTEDGVA---WTFLTRNSDEKIELCRF 205 (340)
Q Consensus 147 ~~~~~~~~------~~i~~~~~~~~~~~l~~~~~d------------~~v~iwd~~~~~~---~~~~~~~~~~~v~~~~~ 205 (340)
...+.... ..+..++|+|+|+++++++.+ +.|.+||+.+++. +..+. ....+.+++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~ 155 (349)
T 1jmx_B 78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--MPRQVYLMRA 155 (349)
T ss_dssp EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--CCSSCCCEEE
T ss_pred EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--CCCcccceeE
Confidence 65554322 237889999999999988865 8999999988543 33333 2235889999
Q ss_pred ccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC-----------------------------------------
Q 019482 206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR----------------------------------------- 244 (340)
Q Consensus 206 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~----------------------------------------- 244 (340)
+|+++ ++ + .+ +.|.+||+.+++.+..+....
T Consensus 156 s~dg~-l~----~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 227 (349)
T 1jmx_B 156 ADDGS-LY----V-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPA 227 (349)
T ss_dssp CTTSC-EE----E-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------C
T ss_pred CCCCc-EE----E-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcc
Confidence 99998 32 2 23 339999999887665543221
Q ss_pred ---------------------------CCeeEEEECC-CCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEE
Q 019482 245 ---------------------------KPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF 296 (340)
Q Consensus 245 ---------------------------~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~ 296 (340)
..+..++|+| ++++++++ ++.|.+||+.+++....+.. ...+.+++|
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~ 302 (349)
T 1jmx_B 228 TADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL---DHTYYCVAF 302 (349)
T ss_dssp CCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC---SSCCCEEEE
T ss_pred ccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC---CCCccceEE
Confidence 1345677889 99999988 88999999999988776543 235789999
Q ss_pred ecCCeEEEEEecCCcEEEEEecCCC
Q 019482 297 CPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 297 ~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
+|++++|++++.++.|.+|++....
T Consensus 303 s~dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 303 DKKGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp CSSSSCEEEESBSSEEEEEETTTTE
T ss_pred CCCCCEEEEecCCCeEEEEeccccc
Confidence 9999988888889999999986543
No 148
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.93 E-value=1.7e-24 Score=186.34 Aligned_cols=206 Identities=13% Similarity=0.071 Sum_probs=155.3
Q ss_pred CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeee-------eec-cccCCCCCCCCCeEEEEEecCCCeEE----Ec
Q 019482 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI-------NLL-AKKMPPLQDAGPQKCLSFSVDGSRFA----AG 130 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~-------~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~----~~ 130 (340)
...++.+++++++.++++++.++ +++|+........ ... ......+.+...|.+++|+|++++|+ ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 34588999999999999999988 9998875321100 000 00001123556799999999999999 89
Q ss_pred cCCCcEEEEeCCCC--------ce---eeccccCccceeEEEecCC-CCeEEEeeCCCeEEEEEccCCeeEEEeecCCCC
Q 019482 131 GVDGHLRIMHWPSL--------RI---ILDEPKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE 198 (340)
Q Consensus 131 ~~dg~i~~~d~~~~--------~~---~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~ 198 (340)
+.|+.|++||++++ +. ...+.+|...|.+++|+|+ +++|++++.|++|++||+++++.+..... +..
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~-~~~ 193 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP-STV 193 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC-GGG
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC-CCC
Confidence 99999999998754 11 3344557779999999997 78999999999999999999876655543 456
Q ss_pred ceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC-------CCeeEEEECCCCCEEEEe-eCCC----
Q 019482 199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-------KPASVLSISLDGKYLAMG-SKDG---- 266 (340)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-------~~i~~~~~s~~~~~l~~~-~~dg---- 266 (340)
.+.+++|+|+|++ +++++.|+.|++||.+ ++....+..+. ..+.++.|++++.++++. +.||
T Consensus 194 ~v~~v~wspdg~~-----lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~ 267 (434)
T 2oit_A 194 AVTSVCWSPKGKQ-----LAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLET 267 (434)
T ss_dssp CEEEEEECTTSSC-----EEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSS
T ss_pred ceeEEEEcCCCCE-----EEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCC
Confidence 7999999999998 7889999999999998 55544444332 278999999988877553 3343
Q ss_pred --cEEEEeccCc
Q 019482 267 --DICVVDVKKM 276 (340)
Q Consensus 267 --~i~i~d~~~~ 276 (340)
.+++|++...
T Consensus 268 ~~~v~i~~l~~~ 279 (434)
T 2oit_A 268 SPDVVMALLPKK 279 (434)
T ss_dssp CCEEEEEECCCT
T ss_pred CCceEEEEeccC
Confidence 3899999764
No 149
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=5.6e-24 Score=202.58 Aligned_cols=240 Identities=12% Similarity=0.054 Sum_probs=183.7
Q ss_pred EEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCce-eeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcE
Q 019482 58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA-TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL 136 (340)
Q Consensus 58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 136 (340)
.+.+|...+.++.|+++ ..+++++.++.+.||.+.... ....+. +...+...+|+|||++|+++ .++.|
T Consensus 198 ~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~--------~~~~~~~~~~SpDG~~la~~-~~~~i 267 (1045)
T 1k32_A 198 KIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHT--------SFTDYYPRHLNTDGRRILFS-KGGSI 267 (1045)
T ss_dssp EEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECC--------CCCSSCEEEEEESSSCEEEE-ETTEE
T ss_pred ECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEec--------CCCCcceeeEcCCCCEEEEE-eCCEE
Confidence 45789999999999988 566677888999999886422 222221 12345677999999999887 48999
Q ss_pred EEEeCCCCceeecccc-----------CccceeEEEec-CCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEE
Q 019482 137 RIMHWPSLRIILDEPK-----------AHKSVLDMDFS-LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCR 204 (340)
Q Consensus 137 ~~~d~~~~~~~~~~~~-----------~~~~i~~~~~~-~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~ 204 (340)
++||+.... +..+.. +...+.+++|+ |||++|++++ ++.+++|++..++... +..+....+..++
T Consensus 268 ~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~ 344 (1045)
T 1k32_A 268 YIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRG 344 (1045)
T ss_dssp EEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEEC
T ss_pred EEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeee
Confidence 999985433 333333 22368899999 9999999988 7899999998776543 4333322789999
Q ss_pred EccCCCcceEEEEEecCCcceEE-EEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc
Q 019482 205 FSKDGTKPFLFCTVQRGDKALLA-VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK 283 (340)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 283 (340)
|+ +|+. ++..+.+..+. +||+.+++... +..+...+..++|+|||++|++++.++.|++||+.+++.....
T Consensus 345 ~s-dg~~-----l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~- 416 (1045)
T 1k32_A 345 GD-TKVA-----FIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE- 416 (1045)
T ss_dssp SS-SEEE-----EEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-
T ss_pred Ec-CCCe-----EEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEec-
Confidence 99 9886 44445578888 99998876543 3366678999999999999999999999999999998876654
Q ss_pred ccccccceeeEEEecCCeEEEEEecCC----------cEEEEEecC
Q 019482 284 RLHLGTSIALVEFCPTQRVVLTASKEW----------GAMITKLTV 319 (340)
Q Consensus 284 ~~~~~~~i~~~~~~~~~~~l~~~~~dg----------~i~iw~~~~ 319 (340)
..| ...+.+++|+|||++|++++.++ .|++|++..
T Consensus 417 ~~~-~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~ 461 (1045)
T 1k32_A 417 RSR-EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG 461 (1045)
T ss_dssp ECS-SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred cCC-CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence 244 56789999999999999887754 899999864
No 150
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=2.5e-24 Score=197.92 Aligned_cols=288 Identities=11% Similarity=0.028 Sum_probs=188.0
Q ss_pred eeEEeeeeecCCCccEEEEcCCCCc---ccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482 6 TVTCGSWIKRPENVNLVVLGKSSRA---SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (340)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~---~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (340)
.|.+++|+| ++..++++..... ...++.+.+|+++.... .......+|...+..++|+|||+.||.++
T Consensus 62 ~v~~~~~Sp---Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~------~~l~~~~~~~~~~~~~~~SPdG~~la~~~ 132 (723)
T 1xfd_A 62 RAIRYEISP---DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP------QSLDPPEVSNAKLQYAGWGPKGQQLIFIF 132 (723)
T ss_dssp TCSEEEECT---TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC------EECCCTTCCSCCCSBCCBCSSTTCEEEEE
T ss_pred ccceEEECC---CCCEEEEEecCccceeecceeeEEEEECCCCce------EeccCCccccccccccEECCCCCEEEEEE
Confidence 488999999 4456666543221 12346788888763321 00111234555689999999999999988
Q ss_pred cCCCEEEEEecCceeeeeeccccCCC--C---------CCCCCeEEEEEecCCCeEEEccCCC-----------------
Q 019482 83 TNGGCKLFEVYGGATDINLLAKKMPP--L---------QDAGPQKCLSFSVDGSRFAAGGVDG----------------- 134 (340)
Q Consensus 83 ~d~~i~iw~~~~~~~~~~~~~~~~~~--~---------~~~~~v~~~~~~~~~~~l~~~~~dg----------------- 134 (340)
. +.|++||+.+++............ . +..+.+.+++|+|||++|++++.|+
T Consensus 133 ~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~ 211 (723)
T 1xfd_A 133 E-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYP 211 (723)
T ss_dssp T-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSC
T ss_pred C-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCC
Confidence 6 679999998876433222111000 0 0012347899999999999887543
Q ss_pred -----------------cEEEEeCCCCceeeccccC------ccceeEEEecCCCCeEEEeeC----CCeEEEEEccCCe
Q 019482 135 -----------------HLRIMHWPSLRIILDEPKA------HKSVLDMDFSLDSEFLATTST----DGSARIWKTEDGV 187 (340)
Q Consensus 135 -----------------~i~~~d~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~----d~~v~iwd~~~~~ 187 (340)
.|++||+.+++....+..+ ...+..++|+|||+++++.+. +..|++||+.+++
T Consensus 212 ~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~ 291 (723)
T 1xfd_A 212 TVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV 291 (723)
T ss_dssp CCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred cceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc
Confidence 7999999888754444433 457899999999998877643 3579999999988
Q ss_pred eEEEeecCCCCce----eeEEEccCCCcceEEEEEecCCcc------eEEEEE-CCCCcE--EeeeeccCCCeeE-EEEC
Q 019482 188 AWTFLTRNSDEKI----ELCRFSKDGTKPFLFCTVQRGDKA------LLAVYD-ISTWNK--IGHKRLLRKPASV-LSIS 253 (340)
Q Consensus 188 ~~~~~~~~~~~~v----~~~~~~~~~~~~~~~~~~~~~~d~------~i~i~d-~~~~~~--~~~~~~~~~~i~~-~~~s 253 (340)
....+...+...+ ..++|+|||+.+++ .+...++ .|.+|| ...++. ...+......+.. ++|+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~---~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~s 368 (723)
T 1xfd_A 292 CTKKHEDESEAWLHRQNEEPVFSKDGRKFFF---IRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYD 368 (723)
T ss_dssp EEEEEEEECSSCCCCCCCCCEECTTSCSEEE---EEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEE
T ss_pred ceEEEEeccCCEEeccCCCceEcCCCCeEEE---EEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEc
Confidence 7666554433333 38899999997421 2234455 677788 344441 3344433344544 6999
Q ss_pred CCCCEEEEeeCC---CcEEEEeccCce--Eeeccccc--ccccceeeEEEecCCeEEEEEe
Q 019482 254 LDGKYLAMGSKD---GDICVVDVKKME--INHWSKRL--HLGTSIALVEFCPTQRVVLTAS 307 (340)
Q Consensus 254 ~~~~~l~~~~~d---g~i~i~d~~~~~--~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~ 307 (340)
|||+.|+..+.+ +.+++|++.... ....+... + ...+..++|+|||++|+...
T Consensus 369 pdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 369 EKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVE-NCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp TTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSS-SCCCCEEEECTTSSEEEEEC
T ss_pred CCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccC-CCCeEEEEECCCCCEEEEEc
Confidence 999999876554 789999986432 22222211 3 45688999999998877653
No 151
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.93 E-value=3.2e-23 Score=174.93 Aligned_cols=270 Identities=9% Similarity=0.045 Sum_probs=181.6
Q ss_pred CceEEEEeCCCCCCcccCCeeeEEEe-cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEec-CceeeeeeccccCCCCCCC
Q 019482 35 SVLEIFSFDPKTTSVYTSPLVTYVFD-ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVY-GGATDINLLAKKMPPLQDA 112 (340)
Q Consensus 35 ~~i~i~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~-~~~~~~~~~~~~~~~~~~~ 112 (340)
+.|.+|.++.....+. .. .... ++...+..++|+|+|++|++++.+ .|.+|++. +++....... . ..
T Consensus 14 ~~i~~~~~d~~~g~l~--~~--~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~-~-----~~ 82 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCK--LI--KRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASH-P-----IG 82 (365)
T ss_dssp CEEEEEEEETTTTEEE--EE--EEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE-E-----CC
T ss_pred CcEEEEEEECCCCCEE--Ee--eEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEe-e-----cC
Confidence 4588888876544331 11 1111 234578899999999999998888 89999997 6654322111 0 01
Q ss_pred CCeEEEEEecCCCe--EEEcc-------------CCCcEEEEeCC-CCceeeccc----cCccceeEEEecCCCCeEEEe
Q 019482 113 GPQKCLSFSVDGSR--FAAGG-------------VDGHLRIMHWP-SLRIILDEP----KAHKSVLDMDFSLDSEFLATT 172 (340)
Q Consensus 113 ~~v~~~~~~~~~~~--l~~~~-------------~dg~i~~~d~~-~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~ 172 (340)
+.+.+++|+|+|++ ++++. .++.+.+|++. +++....+. .+...+.+++|+|||++++++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 23456899999994 55554 68999999997 454432222 133578999999999988876
Q ss_pred eC-CCeEEEEEcc-CCeeE--EEeecC-CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC--CCcEE---eeeec
Q 019482 173 ST-DGSARIWKTE-DGVAW--TFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TWNKI---GHKRL 242 (340)
Q Consensus 173 ~~-d~~v~iwd~~-~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~--~~~~~---~~~~~ 242 (340)
+. ++.|++||+. +++.. ..+... +...+..++|+|+|+.+ .++...++.|.+|+++ +++.. ..+..
T Consensus 163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l----~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~ 238 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYL----YALMEAGNRICEYVIDPATHMPVYTHHSFPL 238 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEE----EEEETTTTEEEEEEECTTTCCEEEEEEEEES
T ss_pred cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEE----EEEECCCCeEEEEEEeCCCCcEEEccceEEc
Confidence 64 6799999998 67643 223211 23458999999999963 2334457899999765 45532 12221
Q ss_pred c-------CC------CeeEEE-ECCCCCEEEEeeCCC------cEEEEecc-CceEeecc--cccccccceeeEEEec-
Q 019482 243 L-------RK------PASVLS-ISLDGKYLAMGSKDG------DICVVDVK-KMEINHWS--KRLHLGTSIALVEFCP- 298 (340)
Q Consensus 243 ~-------~~------~i~~~~-~s~~~~~l~~~~~dg------~i~i~d~~-~~~~~~~~--~~~~~~~~i~~~~~~~- 298 (340)
. .. .+..++ |+|||++|++++.+. .|.+|++. +++..... ...+ ...+..++|+|
T Consensus 239 ~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~-~~~~~~~a~sp~ 317 (365)
T 1jof_A 239 IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP-TSGGHSNAVSPC 317 (365)
T ss_dssp SCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS-SCCTTCCCEEEC
T ss_pred CCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC-CCCcccceecCC
Confidence 1 11 478899 999999988776432 79999996 55544321 1112 34577899999
Q ss_pred --CCeEEEEEecC-CcEEEEEecCC
Q 019482 299 --TQRVVLTASKE-WGAMITKLTVP 320 (340)
Q Consensus 299 --~~~~l~~~~~d-g~i~iw~~~~~ 320 (340)
||++|++++.+ +.|.+|+++..
T Consensus 318 ~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 318 PWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999988864 89999999754
No 152
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=9.4e-24 Score=175.83 Aligned_cols=233 Identities=9% Similarity=-0.012 Sum_probs=170.1
Q ss_pred EEcCCCCe-EEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-CCcEEEEeCCCCce-
Q 019482 70 AVNPSGDD-FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRI- 146 (340)
Q Consensus 70 ~~~~~~~~-l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~- 146 (340)
.|.+++.+ +++.+.++.|.+||+.+++....... +...+ .++|+|+++++++++. ++.|.+||+.+++.
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-------~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~ 75 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITL-------GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK 75 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEEC-------CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEc-------cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee
Confidence 45565554 66777889999999998876554432 23455 9999999997666655 88999999998886
Q ss_pred eeccccCccceeEEEecCCCCeEEEeeCCC---eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCc
Q 019482 147 ILDEPKAHKSVLDMDFSLDSEFLATTSTDG---SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK 223 (340)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d 223 (340)
......+..+..+++|+|++++++++..++ .|.+||+++++.+..+... ..+..++|+|+|+++ +++...+
T Consensus 76 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~spdg~~l----~~~~~~~ 149 (331)
T 3u4y_A 76 VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP--YDAVGIAISPNGNGL----ILIDRSS 149 (331)
T ss_dssp EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC--TTEEEEEECTTSSCE----EEEEETT
T ss_pred EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC--CCccceEECCCCCEE----EEEecCC
Confidence 555544444554499999999998655553 8999999999988877643 357899999999863 3344455
Q ss_pred ce-EEEEECCCCcEE----eeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceE---eecccccccccceeeE
Q 019482 224 AL-LAVYDISTWNKI----GHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEI---NHWSKRLHLGTSIALV 294 (340)
Q Consensus 224 ~~-i~i~d~~~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~---~~~~~~~~~~~~i~~~ 294 (340)
+. |.+|++.....+ ............++|+|+|+++++++ .++.|++||+.+++. +..+.. ...+..+
T Consensus 150 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~~~~~ 226 (331)
T 3u4y_A 150 ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT---NNLPGTI 226 (331)
T ss_dssp TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC---SSCCCCE
T ss_pred CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC---CCCCceE
Confidence 66 999998864432 12223345678999999999766554 688999999998876 554432 3578899
Q ss_pred EEecCCeEEEEEe-cCCcEEEEEecC
Q 019482 295 EFCPTQRVVLTAS-KEWGAMITKLTV 319 (340)
Q Consensus 295 ~~~~~~~~l~~~~-~dg~i~iw~~~~ 319 (340)
+|+|||++|+.++ .++.|.+|++..
T Consensus 227 ~~spdg~~l~v~~~~~~~i~~~d~~~ 252 (331)
T 3u4y_A 227 VVSRDGSTVYVLTESTVDVFNFNQLS 252 (331)
T ss_dssp EECTTSSEEEEECSSEEEEEEEETTT
T ss_pred EECCCCCEEEEEEcCCCEEEEEECCC
Confidence 9999999766554 578899999864
No 153
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=3.2e-24 Score=175.36 Aligned_cols=221 Identities=14% Similarity=0.094 Sum_probs=162.9
Q ss_pred EecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC-CceeeccccCc-ccee
Q 019482 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-LRIILDEPKAH-KSVL 158 (340)
Q Consensus 81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~-~~i~ 158 (340)
++.++.|++||+.+++..... .|...+.+++|+|++++|++++ ++.|++||+.+ ++.......+. ..+.
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~~--------~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 88 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVVW--------QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNN 88 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEEE--------EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCS
T ss_pred CCcceeEEEEeCCCCceeeec--------cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccccccccc
Confidence 456789999999887754322 2567899999999999999876 78999999998 77665554443 5789
Q ss_pred EEEecCCCCeEEEee--CCCeEEEEEc--cCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC--
Q 019482 159 DMDFSLDSEFLATTS--TDGSARIWKT--EDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-- 232 (340)
Q Consensus 159 ~~~~~~~~~~l~~~~--~d~~v~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-- 232 (340)
+++|+|++++|++++ .++...||.+ .+++ ...+... ..+..++|+|+++.+ ++++..++.+.+|+++
T Consensus 89 ~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~--~~~~~~~~spdg~~l----~~~~~~~~~~~l~~~~~~ 161 (297)
T 2ojh_A 89 DHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN--LPSYWHGWSPDGKSF----TYCGIRDQVFDIYSMDID 161 (297)
T ss_dssp CCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS--SSEEEEEECTTSSEE----EEEEEETTEEEEEEEETT
T ss_pred ceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC--CCccceEECCCCCEE----EEEECCCCceEEEEEECC
Confidence 999999999999998 3345555554 4444 3334322 348899999999963 2355677888888853
Q ss_pred CCcEEeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEecc-CceEeecccccccccceeeEEEecCCeEEEEEecC-
Q 019482 233 TWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVK-KMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE- 309 (340)
Q Consensus 233 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d- 309 (340)
+++ ...+..+...+.++.|+|+|++|++++ .++.+++|++. .+.....+. .+ ...+..++|+|++++|++++.+
T Consensus 162 ~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~-~~-~~~~~~~~~s~dg~~l~~~~~~~ 238 (297)
T 2ojh_A 162 SGV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT-DS-AYGDWFPHPSPSGDKVVFVSYDA 238 (297)
T ss_dssp TCC-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC-CC-SEEEEEEEECTTSSEEEEEEEET
T ss_pred CCc-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe-cC-CcccCCeEECCCCCEEEEEEcCC
Confidence 333 345566677899999999999888766 58899999886 333333332 33 4578999999999999988876
Q ss_pred ----------CcEEEEEecCC
Q 019482 310 ----------WGAMITKLTVP 320 (340)
Q Consensus 310 ----------g~i~iw~~~~~ 320 (340)
+.+++|++...
T Consensus 239 ~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 239 DVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp TCCSCCSSEEEEEEEEETTSC
T ss_pred CCCcccccCceEEEEEecCCC
Confidence 45888887643
No 154
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.93 E-value=2.7e-24 Score=192.75 Aligned_cols=231 Identities=13% Similarity=0.030 Sum_probs=168.8
Q ss_pred CCCeeEEEEcCCCCeEEEEec-CCCEEEEEecCceeeeeeccccCCCCCCC-CCeEEEEEecCCCeEEEccC---CCcEE
Q 019482 63 EGDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDA-GPQKCLSFSVDGSRFAAGGV---DGHLR 137 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---dg~i~ 137 (340)
..+|++++|+|||++||+++. ||+++||++++++.. .+. .+. ..+..++|+|| +.+++++. +....
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt-------~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~ 91 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLN-------REPINSVLDPHYGVG-RVILVRDVSKGAEQHA 91 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECC-------SSCCSEECEECTTCS-EEEEEEECSTTSCCEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eee-------cccccccccccCCCC-eEEEEeccCCCCcceE
Confidence 457999999999999998877 999999999766542 221 133 57899999999 77776654 45556
Q ss_pred EEeCCC---CceeeccccCccceeEEEecCCCCe-EEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcce
Q 019482 138 IMHWPS---LRIILDEPKAHKSVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213 (340)
Q Consensus 138 ~~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (340)
+|.+.. +... .+... ..+...+|+|+++. +++.+.++.+.+||+.+++...... ... .+++|+|||+.
T Consensus 92 l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~---~~~~~spDG~~-- 163 (582)
T 3o4h_A 92 LFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPG---FGFVSDIRGDL-- 163 (582)
T ss_dssp EEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS---CEEEEEEETTE--
T ss_pred EEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CCC---ceEEECCCCCE--
Confidence 654432 2222 22222 23446688888764 3333344556699999887655443 222 78999999997
Q ss_pred EEEEEecCCc----ceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCC--cEEEEeccCceEeeccccccc
Q 019482 214 LFCTVQRGDK----ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG--DICVVDVKKMEINHWSKRLHL 287 (340)
Q Consensus 214 ~~~~~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~ 287 (340)
++.++.+ ..|++||+.+++.. .+..+...+..++|||||++|+++..++ .|++||+.+++.. .+ ..+
T Consensus 164 ---la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~-~~~- 236 (582)
T 3o4h_A 164 ---IAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL-ELP- 236 (582)
T ss_dssp ---EEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC-CCS-
T ss_pred ---EEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec-cCC-
Confidence 4434434 78999999988764 5667777889999999999999888888 8999999988876 33 334
Q ss_pred ccceeeEE--------EecCCeEEEEEecCCcEEEEEe
Q 019482 288 GTSIALVE--------FCPTQRVVLTASKEWGAMITKL 317 (340)
Q Consensus 288 ~~~i~~~~--------~~~~~~~l~~~~~dg~i~iw~~ 317 (340)
...+..++ |+|||.++++++.|+.+++|++
T Consensus 237 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 237 SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 44566667 9999999999999999999998
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.92 E-value=3.7e-22 Score=167.36 Aligned_cols=258 Identities=12% Similarity=0.079 Sum_probs=169.7
Q ss_pred eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe-cC
Q 019482 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TN 84 (340)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~d 84 (340)
.+..++|+|+ +.+++.+. .+.++.|.+|+++... ......+..+...+..++|+|+|++|++++ .+
T Consensus 41 ~p~~~a~spd---g~l~~~~~----~~~~~~v~~~~~~~g~------~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~ 107 (347)
T 3hfq_A 41 NPTYLALSAK---DCLYSVDK----EDDEGGIAAWQIDGQT------AHKLNTVVAPGTPPAYVAVDEARQLVYSANYHK 107 (347)
T ss_dssp CCCCEEECTT---CEEEEEEE----ETTEEEEEEEEEETTE------EEEEEEEEEESCCCSEEEEETTTTEEEEEETTT
T ss_pred CcceEEEccC---CeEEEEEe----cCCCceEEEEEecCCc------EEEeeeeecCCCCCEEEEECCCCCEEEEEeCCC
Confidence 3456788883 33444332 1235679999885221 112233445677899999999999998887 67
Q ss_pred CCEEEEEecCc-ee--eeeeccccCC--CCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC-CCceee--cccc-Ccc
Q 019482 85 GGCKLFEVYGG-AT--DINLLAKKMP--PLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP-SLRIIL--DEPK-AHK 155 (340)
Q Consensus 85 ~~i~iw~~~~~-~~--~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~~--~~~~-~~~ 155 (340)
+.+.+|++... .. .......... .......+.+++|+|+|+++++...++.|.+|++. +++... .... ...
T Consensus 108 ~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~ 187 (347)
T 3hfq_A 108 GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGF 187 (347)
T ss_dssp TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTC
T ss_pred CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCC
Confidence 89999999632 21 1111110000 00123458899999999966776778899999998 444221 1111 223
Q ss_pred ceeEEEecCCCCeEEE-eeCCCeEEEEEccC--Cee--EEEeecCCC-----CceeeEEEccCCCcceEEEEEecCCcce
Q 019482 156 SVLDMDFSLDSEFLAT-TSTDGSARIWKTED--GVA--WTFLTRNSD-----EKIELCRFSKDGTKPFLFCTVQRGDKAL 225 (340)
Q Consensus 156 ~i~~~~~~~~~~~l~~-~~~d~~v~iwd~~~--~~~--~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~d~~ 225 (340)
.+..++|+|||+++++ ...++.+.+|+++. ++. +..+..... ..+..++|+|+|+++ .++...++.
T Consensus 188 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l----~v~~~~~~~ 263 (347)
T 3hfq_A 188 GPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFL----YVSNRGYNT 263 (347)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEE----EEEEETTTE
T ss_pred CCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEE----EEEeCCCCE
Confidence 5778999999996655 55788999999874 443 222221111 347889999999963 245556899
Q ss_pred EEEEECCCC---cEEeeeeccCCCeeEEEECCCCCEEEEeeCC-CcEEEE--eccCceEee
Q 019482 226 LAVYDISTW---NKIGHKRLLRKPASVLSISLDGKYLAMGSKD-GDICVV--DVKKMEINH 280 (340)
Q Consensus 226 i~i~d~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~i~--d~~~~~~~~ 280 (340)
|.+||+... +.+..+..+...+..++|+|||++|++++.+ +.|.+| |..+++...
T Consensus 264 v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 264 LAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp EEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 999999732 4444555555678899999999999888764 899999 555666543
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.92 E-value=6e-24 Score=195.17 Aligned_cols=281 Identities=13% Similarity=0.101 Sum_probs=189.6
Q ss_pred EEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCC---CeeEEEEcCCCCeEEEEec-
Q 019482 8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG---DPMTIAVNPSGDDFVCSTT- 83 (340)
Q Consensus 8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~~~~~- 83 (340)
.+++|+|+. .+++.+ .++.|.+|+.+ .......+.+|.. .+.+++|||||++|++++.
T Consensus 19 ~~~~~s~dg---~~~~~~-------~d~~i~~~~~~--------~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~ 80 (719)
T 1z68_A 19 FFPNWISGQ---EYLHQS-------ADNNIVLYNIE--------TGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDY 80 (719)
T ss_dssp CCCEESSSS---EEEEEC-------TTSCEEEEESS--------SCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEE
T ss_pred CccEECCCC---eEEEEc-------CCCCEEEEEcC--------CCcEEEEEccccccccceeeEEECCCCCeEEEEecC
Confidence 478999943 566632 35679999886 3333344444433 4899999999999998876
Q ss_pred --------CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCc-
Q 019482 84 --------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH- 154 (340)
Q Consensus 84 --------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~- 154 (340)
++.|++||+.+++...... ....+..++|||||+.|+.+. ++.|++|++.+++.........
T Consensus 81 ~~~~~~s~~~~i~~~d~~~g~~~~~~~--------l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~ 151 (719)
T 1z68_A 81 SKLWRYSYTATYYIYDLSNGEFVRGNE--------LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE 151 (719)
T ss_dssp EECSSSCEEEEEEEEETTTTEECCSSC--------CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred ceeEEeecceEEEEEECCCCcccccee--------cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence 6899999998886521010 124578899999999999885 7899999998877654332221
Q ss_pred cce-----------------eEEEecCCCCeEEEeeCCC----------------------------------eEEEEEc
Q 019482 155 KSV-----------------LDMDFSLDSEFLATTSTDG----------------------------------SARIWKT 183 (340)
Q Consensus 155 ~~i-----------------~~~~~~~~~~~l~~~~~d~----------------------------------~v~iwd~ 183 (340)
..+ .+++|+|||++|++++.|. .|++||+
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~ 231 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDT 231 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEES
T ss_pred CCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEEC
Confidence 112 4899999999999987552 7889999
Q ss_pred cCCeeE--EEee-----cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEE----CCCCcEEeee----eccCCCee
Q 019482 184 EDGVAW--TFLT-----RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD----ISTWNKIGHK----RLLRKPAS 248 (340)
Q Consensus 184 ~~~~~~--~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d----~~~~~~~~~~----~~~~~~i~ 248 (340)
.+++.. ..+. ..+...+..++|+||++. ++...........|.+|| ..+++..... ..+...+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~-~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~ 310 (719)
T 1z68_A 232 TYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERV-CLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAG 310 (719)
T ss_dssp SCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEE-EEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSS
T ss_pred CCCCccceeEccCCccCCCCcceEEEeEEeCCCeE-EEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEc
Confidence 887642 1221 134557899999999753 111001122235689999 8777655444 35555565
Q ss_pred -----EEEECCCCCEEEE--eeCCC--cEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC-----CcEEE
Q 019482 249 -----VLSISLDGKYLAM--GSKDG--DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-----WGAMI 314 (340)
Q Consensus 249 -----~~~~s~~~~~l~~--~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i 314 (340)
.+.|+|||+.++. ...+| .|.+||+.+++... +. .+ ...+..+.++ +++.|+..+.+ +..++
T Consensus 311 ~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~-lt-~~-~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l 386 (719)
T 1z68_A 311 GFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQ-IT-SG-KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNI 386 (719)
T ss_dssp SSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEE-CS-CS-SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEE
T ss_pred cccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEe-cc-cC-ceEEEEEEEE-eCCEEEEEEecCCCCCceEEE
Confidence 7899999996654 43455 57777887766332 22 22 3457777777 77766665554 88999
Q ss_pred EEecCC
Q 019482 315 TKLTVP 320 (340)
Q Consensus 315 w~~~~~ 320 (340)
|.++..
T Consensus 387 ~~~~~~ 392 (719)
T 1z68_A 387 YRISIG 392 (719)
T ss_dssp EEEECS
T ss_pred EEEeCC
Confidence 999863
No 157
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.92 E-value=4.3e-23 Score=175.68 Aligned_cols=286 Identities=10% Similarity=0.061 Sum_probs=184.7
Q ss_pred eeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEE
Q 019482 10 GSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKL 89 (340)
Q Consensus 10 ~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~i 89 (340)
.+|+|+ +..+++... .++...+|.++..+. .......+|...+..++|+|||+.|+.++.++.|++
T Consensus 41 ~~~SpD---g~~l~~~~~-----~~g~~~l~~~d~~~g------~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~ 106 (388)
T 3pe7_A 41 KCFTRD---GSKLLFGGA-----FDGPWNYYLLDLNTQ------VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMR 106 (388)
T ss_dssp CCBCTT---SCEEEEEEC-----TTSSCEEEEEETTTC------EEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEE
T ss_pred ccCCCC---CCEEEEEEc-----CCCCceEEEEeCCCC------ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEE
Confidence 679994 444554442 233456666654432 223334456556667889999999999999989999
Q ss_pred EEecCceeeeeeccccCCCCCCCCCeEEE--EEecCCCeEEE----------------------ccCCCcEEEEeCCCCc
Q 019482 90 FEVYGGATDINLLAKKMPPLQDAGPQKCL--SFSVDGSRFAA----------------------GGVDGHLRIMHWPSLR 145 (340)
Q Consensus 90 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~----------------------~~~dg~i~~~d~~~~~ 145 (340)
||+.+++....... +...+... .++|++++++. ...+..|.+||+.+++
T Consensus 107 ~d~~~g~~~~~~~~-------~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 179 (388)
T 3pe7_A 107 VDLATLEENVVYQV-------PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE 179 (388)
T ss_dssp EETTTCCEEEEEEC-------CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred EECCCCcceeeeec-------hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence 99998765433221 22333333 34889988873 2345789999999886
Q ss_pred eeeccccCccceeEEEecC-CCCeEEEeeCC------CeEEEEEccCCeeEEEeecCCC-CceeeEEEccCCCcceEEEE
Q 019482 146 IILDEPKAHKSVLDMDFSL-DSEFLATTSTD------GSARIWKTEDGVAWTFLTRNSD-EKIELCRFSKDGTKPFLFCT 217 (340)
Q Consensus 146 ~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------~~v~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~ 217 (340)
... +..+...+..+.|+| ||+.|+.++.+ ..|.++|...++. ..+..... ..+..+.|+|||+.+++...
T Consensus 180 ~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~ 257 (388)
T 3pe7_A 180 STV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSY 257 (388)
T ss_dssp EEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred eEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEec
Confidence 543 444556789999999 99998877653 3788888765543 33433332 35778999999997433211
Q ss_pred EecCCcceEEEEECCCCcEEeeeeccC-----CCeeEEEECCCCCEEEEe---------eCCCcEEEEeccCceEeeccc
Q 019482 218 VQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMG---------SKDGDICVVDVKKMEINHWSK 283 (340)
Q Consensus 218 ~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~---------~~dg~i~i~d~~~~~~~~~~~ 283 (340)
-.+..+..|.+||+.+++......... .....+.|+|||+.|+.. ..+..|++||+.+++......
T Consensus 258 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 337 (388)
T 3pe7_A 258 LKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVAR 337 (388)
T ss_dssp ETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEE
T ss_pred CCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEecc
Confidence 112223359999999987532222111 001223799999988864 446689999999887654322
Q ss_pred cccccc-----------ceeeEEEecCCeEEEEEe-cCCcEEEEEecCCC
Q 019482 284 RLHLGT-----------SIALVEFCPTQRVVLTAS-KEWGAMITKLTVPA 321 (340)
Q Consensus 284 ~~~~~~-----------~i~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~ 321 (340)
+ .. .+..++|+|||+.|+..+ .+|...||.++.+.
T Consensus 338 --~-~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 338 --H-DTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp --C-CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred --c-cCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence 2 12 478899999998777655 57889999987665
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.92 E-value=2.2e-21 Score=163.55 Aligned_cols=275 Identities=13% Similarity=0.148 Sum_probs=177.3
Q ss_pred eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe-cC
Q 019482 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TN 84 (340)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~d 84 (340)
.+..++|+|+ +.++++++... ..++.+.+|.++..+..+ ........+...+..+++ ++++|++++ .+
T Consensus 51 ~p~~l~~spd---g~~l~~~~~~~--~~~~~v~~~~~~~~~g~~----~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~ 119 (361)
T 3scy_A 51 NPSYLIPSAD---GKFVYSVNEFS--KDQAAVSAFAFDKEKGTL----HLLNTQKTMGADPCYLTT--NGKNIVTANYSG 119 (361)
T ss_dssp CCCSEEECTT---SSEEEEEECCS--STTCEEEEEEEETTTTEE----EEEEEEECSSSCEEEEEE--CSSEEEEEETTT
T ss_pred CCceEEECCC---CCEEEEEEccC--CCCCcEEEEEEeCCCCcE----EEeeEeccCCCCcEEEEE--CCCEEEEEECCC
Confidence 3456788884 34444444211 134679999998653322 122233445567888888 888777776 57
Q ss_pred CCEEEEEecCceeeeeecc----c---cCCCCCCCCCeEEEEEecCCCeEEEcc-CCCcEEEEeCCCCce------e---
Q 019482 85 GGCKLFEVYGGATDINLLA----K---KMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRI------I--- 147 (340)
Q Consensus 85 ~~i~iw~~~~~~~~~~~~~----~---~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~------~--- 147 (340)
+.+.+|++........... . .....++...+.+++|+|+|+++++++ .++.|.+|++..... +
T Consensus 120 ~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~ 199 (361)
T 3scy_A 120 GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK 199 (361)
T ss_dssp TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE
T ss_pred CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec
Confidence 8999999975433222111 0 000112334578899999999665554 578999998875431 1
Q ss_pred ----eccccCccceeEEEecCCCCeEEEee-CCCeEEEEEccCCee--EEEeec--CCCCceeeEEEccCCCcceEEEEE
Q 019482 148 ----LDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVA--WTFLTR--NSDEKIELCRFSKDGTKPFLFCTV 218 (340)
Q Consensus 148 ----~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~--~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~ 218 (340)
.........+..++|+|+|+++++++ .++.|.+|++++++. +..+.. .....+..++|+|+|+++ .+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l----~v 275 (361)
T 3scy_A 200 GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYL----YA 275 (361)
T ss_dssp EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEE----EE
T ss_pred ccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEE----EE
Confidence 11223334678999999999887776 689999999987754 222221 112346799999999972 23
Q ss_pred ecCC-cceEEEEECC--CCc--EEeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEE--eccCceEeecccccccccc
Q 019482 219 QRGD-KALLAVYDIS--TWN--KIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVV--DVKKMEINHWSKRLHLGTS 290 (340)
Q Consensus 219 ~~~~-d~~i~i~d~~--~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~--d~~~~~~~~~~~~~~~~~~ 290 (340)
+... ++.|.+|++. +++ .+..+.. ...+..++|+|+|++|++++ .++.|.+| |..+++........+ ...
T Consensus 276 ~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-~~~ 353 (361)
T 3scy_A 276 SNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIK-VDK 353 (361)
T ss_dssp EECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEE-CSS
T ss_pred ECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeee-CCC
Confidence 4444 6899999986 444 3333444 55678999999999998887 57889996 555677665443333 346
Q ss_pred eeeEEEe
Q 019482 291 IALVEFC 297 (340)
Q Consensus 291 i~~~~~~ 297 (340)
+.++.|.
T Consensus 354 p~~v~~~ 360 (361)
T 3scy_A 354 PVCLKFV 360 (361)
T ss_dssp EEEEEEE
T ss_pred CeEEEEc
Confidence 7888885
No 159
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=1.9e-22 Score=168.16 Aligned_cols=244 Identities=14% Similarity=0.071 Sum_probs=174.5
Q ss_pred eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEec-C----CCCeeEEEEcCCCCeEEE
Q 019482 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE-S----EGDPMTIAVNPSGDDFVC 80 (340)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-h----~~~v~~~~~~~~~~~l~~ 80 (340)
.+.+++|+|+.. .+++.+. .++.|.+|+... ......+.. + ...+..++|+|+|+++++
T Consensus 35 ~~~~~~~s~dg~--~l~v~~~------~~~~v~~~d~~~--------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 98 (337)
T 1pby_B 35 TPMVPMVAPGGR--IAYATVN------KSESLVKIDLVT--------GETLGRIDLSTPEERVKSLFGAALSPDGKTLAI 98 (337)
T ss_dssp CCCCEEECTTSS--EEEEEET------TTTEEEEEETTT--------CCEEEEEECCBTTEEEECTTCEEECTTSSEEEE
T ss_pred CccceEEcCCCC--EEEEEeC------CCCeEEEEECCC--------CCeEeeEEcCCcccccccccceEECCCCCEEEE
Confidence 467889998542 3444333 345688887652 222222221 1 226789999999999988
Q ss_pred Ee------------cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceee
Q 019482 81 ST------------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL 148 (340)
Q Consensus 81 ~~------------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 148 (340)
+. .++.|.+||+.+++....+.. ...+.+++|+|++++|+++ ++.|.+||+.+++...
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--------~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~ 168 (337)
T 1pby_B 99 YESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--------PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVE 168 (337)
T ss_dssp EEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--------CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEE
T ss_pred EecccccccccccccCceEEEEECCCCcEEEEEeC--------CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEee
Confidence 86 578999999988776544421 2456788999999988887 6889999999888765
Q ss_pred ccccCccceeEEEecCCCCeEEEeeCC-C-----------------------eEEEEEccCCeeEEEeecCCCCceeeEE
Q 019482 149 DEPKAHKSVLDMDFSLDSEFLATTSTD-G-----------------------SARIWKTEDGVAWTFLTRNSDEKIELCR 204 (340)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~~~l~~~~~d-~-----------------------~v~iwd~~~~~~~~~~~~~~~~~v~~~~ 204 (340)
.+..+.. ...+.|+|+++.++..+.+ + .|.+||+++++....-...+...+..++
T Consensus 169 ~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~ 247 (337)
T 1pby_B 169 DKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTA 247 (337)
T ss_dssp EECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEE
T ss_pred eeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEE
Confidence 5543331 1234789998876655432 2 4689999988775222223334678899
Q ss_pred EccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccc
Q 019482 205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR 284 (340)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 284 (340)
|+|+++. ++++ ++.|.+||+.+++.+..+... ..+.+++|+|+|++|++++.++.|++||+.+++.+..+..
T Consensus 248 ~s~dg~~-----l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 248 VNPAKTR-----AFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp ECTTSSE-----EEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred ECCCCCE-----EEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 9999997 3333 789999999998887666543 4678999999999999999999999999999887766543
No 160
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.91 E-value=1.5e-23 Score=180.32 Aligned_cols=201 Identities=13% Similarity=0.101 Sum_probs=150.7
Q ss_pred CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc----------eee-----ccccCccceeEEEecCCCCeEE----Eee
Q 019482 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR----------IIL-----DEPKAHKSVLDMDFSLDSEFLA----TTS 173 (340)
Q Consensus 113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~----------~~~-----~~~~~~~~i~~~~~~~~~~~l~----~~~ 173 (340)
..+..+++++++.++++++.++ +++|+..... ... ....+...|.+++|+|++++|+ +++
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 3578899999999999998887 8888753110 000 0112334699999999999999 788
Q ss_pred CCCeEEEEEccCC--------eeEEE--eecCCCCceeeEEEccC-CCcceEEEEEecCCcceEEEEECCCCcEEeeeec
Q 019482 174 TDGSARIWKTEDG--------VAWTF--LTRNSDEKIELCRFSKD-GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (340)
Q Consensus 174 ~d~~v~iwd~~~~--------~~~~~--~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 242 (340)
.|+.|++||++++ +++.. ....|...|.+++|+|+ +.. +++++.|+.|++||++++..+.....
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~-----las~s~Dg~v~iwD~~~~~~~~~~~~ 190 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSM-----VAVCLADGSIAVLQVTETVKVCATLP 190 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTE-----EEEEETTSCEEEEEESSSEEEEEEEC
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCE-----EEEEECCCeEEEEEcCCCcceeeccC
Confidence 9999999999765 22222 22235678999999998 554 78889999999999999877666677
Q ss_pred cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc-----ccccceeeEEEecCCeEEEEEe-cCCc-----
Q 019482 243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL-----HLGTSIALVEFCPTQRVVLTAS-KEWG----- 311 (340)
Q Consensus 243 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~-~dg~----- 311 (340)
|...+.+++|+|+|++|++|+.||.|++||.+ ++....+... .+...+.+++|++++.++++.+ .||.
T Consensus 191 ~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~ 269 (434)
T 2oit_A 191 STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSP 269 (434)
T ss_dssp GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCC
T ss_pred CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCC
Confidence 88899999999999999999999999999998 3333222110 0123799999999998875533 4433
Q ss_pred -EEEEEecCC
Q 019482 312 -AMITKLTVP 320 (340)
Q Consensus 312 -i~iw~~~~~ 320 (340)
+++|++...
T Consensus 270 ~v~i~~l~~~ 279 (434)
T 2oit_A 270 DVVMALLPKK 279 (434)
T ss_dssp EEEEEECCCT
T ss_pred ceEEEEeccC
Confidence 889998754
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.91 E-value=6e-22 Score=165.97 Aligned_cols=245 Identities=15% Similarity=0.062 Sum_probs=170.7
Q ss_pred eeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCC-CCeeEEEEcCCCCeEE-EEecCCCE
Q 019482 10 GSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAVNPSGDDFV-CSTTNGGC 87 (340)
Q Consensus 10 ~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~-~~~~d~~i 87 (340)
+++.+ +..++++++ .++.|.+|+.. +......+..+. ..+..++|+|+|++++ +...++.|
T Consensus 5 ~~~~~---~~~~~v~~~------~~~~v~~~d~~--------~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i 67 (349)
T 1jmx_B 5 PALKA---GHEYMIVTN------YPNNLHVVDVA--------SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDI 67 (349)
T ss_dssp CCCCT---TCEEEEEEE------TTTEEEEEETT--------TTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEE
T ss_pred ccccC---CCEEEEEeC------CCCeEEEEECC--------CCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcE
Confidence 45555 334555444 45669999876 333333444332 2588999999998665 44567899
Q ss_pred EEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC------------CcEEEEeCCCCceeec--cccC
Q 019482 88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------------GHLRIMHWPSLRIILD--EPKA 153 (340)
Q Consensus 88 ~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------g~i~~~d~~~~~~~~~--~~~~ 153 (340)
.+||+.+++....+...... ......+.+++|+|+|++|++++.+ +.|.+||+.+++.... ...+
T Consensus 68 ~~~d~~t~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 146 (349)
T 1jmx_B 68 YGIDLDTCKNTFHANLSSVP-GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM 146 (349)
T ss_dssp EEEETTTTEEEEEEESCCST-TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC
T ss_pred EEEeCCCCcEEEEEEccccc-ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC
Confidence 99999888765444321100 0002236789999999999988865 8999999987543321 1223
Q ss_pred ccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCC-------------------------------------
Q 019482 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS------------------------------------- 196 (340)
Q Consensus 154 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~------------------------------------- 196 (340)
...+.+++|+|+++ +++++ +.|++||+.+++.+..+....
T Consensus 147 ~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 223 (349)
T 1jmx_B 147 PRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK 223 (349)
T ss_dssp CSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred CCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCc
Confidence 34688999999999 55554 349999999888776654221
Q ss_pred ------------------------------CCceeeEEEcc-CCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCC
Q 019482 197 ------------------------------DEKIELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK 245 (340)
Q Consensus 197 ------------------------------~~~v~~~~~~~-~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 245 (340)
...+..++|+| +++. ++.+ ++.|.+||+.+++.+..+.. ..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~-----l~~~--~~~v~~~d~~~~~~~~~~~~-~~ 295 (349)
T 1jmx_B 224 QDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ-----IYGV--LNRLAKYDLKQRKLIKAANL-DH 295 (349)
T ss_dssp ---CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTE-----EEEE--ESEEEEEETTTTEEEEEEEC-SS
T ss_pred CCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCE-----EEEE--cCeEEEEECccCeEEEEEcC-CC
Confidence 01244667778 8886 3333 88999999999987766654 34
Q ss_pred CeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc
Q 019482 246 PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK 283 (340)
Q Consensus 246 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 283 (340)
.+..++|+|+|++|++++.++.|++||+.+++.+..+.
T Consensus 296 ~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 296 TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred CccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 57889999999999988889999999999988776654
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.91 E-value=1.5e-23 Score=192.47 Aligned_cols=240 Identities=9% Similarity=-0.026 Sum_probs=167.2
Q ss_pred EEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC---------CCcEEE
Q 019482 68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---------DGHLRI 138 (340)
Q Consensus 68 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~~ 138 (340)
.++|+|+|++++ .+.|+.|++||+.+++.......... ....+.+++|||||++|++++. ++.|++
T Consensus 20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTM----KSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHH----HTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccc----cccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence 789999996554 45689999999998875443322110 0124789999999999998876 689999
Q ss_pred EeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCc-----------------ee
Q 019482 139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK-----------------IE 201 (340)
Q Consensus 139 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~-----------------v~ 201 (340)
||+.+++.+... .....+..++|+|||+.|+++. ++.|++||+.+++........+... ..
T Consensus 95 ~d~~~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 95 YDLSNGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp EETTTTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred EECCCCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcc
Confidence 999988763111 1124688999999999999986 7899999998887654332222211 25
Q ss_pred eEEEccCCCcceEEEEEecCCc----------------------------------ceEEEEECCCCcEE---e-----e
Q 019482 202 LCRFSKDGTKPFLFCTVQRGDK----------------------------------ALLAVYDISTWNKI---G-----H 239 (340)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~d----------------------------------~~i~i~d~~~~~~~---~-----~ 239 (340)
+++|+|||+.+ +.++.| ..|++||+.+++.. . .
T Consensus 173 ~~~wSPDG~~l-----a~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 247 (719)
T 1z68_A 173 ALWWSPNGKFL-----AYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAM 247 (719)
T ss_dssp CEEECTTSSEE-----EEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHH
T ss_pred cEEECCCCCEE-----EEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCcc
Confidence 89999999973 332222 28899999987642 1 1
Q ss_pred eeccCCCeeEEEECCCCCEEEEeeCC----CcEEEEe----ccCceEeeccc---cccccccee-----eEEEecCCeEE
Q 019482 240 KRLLRKPASVLSISLDGKYLAMGSKD----GDICVVD----VKKMEINHWSK---RLHLGTSIA-----LVEFCPTQRVV 303 (340)
Q Consensus 240 ~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~---~~~~~~~i~-----~~~~~~~~~~l 303 (340)
+..+...+..++|+||++++++.... ..|.+|| +.+++....+. ..+ ...+. .+.|+|||+.|
T Consensus 248 ~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l 326 (719)
T 1z68_A 248 IASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR-TGWAGGFFVSTPVFSYDAISY 326 (719)
T ss_dssp HHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS-SSCSSSSSCCCCEECTTSSCE
T ss_pred CCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC-CceEccccCCccEECCCCCeE
Confidence 22456678999999998877774432 2488899 88887765542 234 34565 88999999855
Q ss_pred E--EEecCCcEEEEEecCC
Q 019482 304 L--TASKEWGAMITKLTVP 320 (340)
Q Consensus 304 ~--~~~~dg~i~iw~~~~~ 320 (340)
+ +...+|...||.++..
T Consensus 327 ~~~~~~~~g~~~l~~~~~~ 345 (719)
T 1z68_A 327 YKIFSDKDGYKHIHYIKDT 345 (719)
T ss_dssp EEEEECTTSCEEEEEESSC
T ss_pred EEEEEccCCceEEEEEECC
Confidence 4 4556776666666543
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.90 E-value=1.1e-21 Score=180.41 Aligned_cols=284 Identities=12% Similarity=0.087 Sum_probs=187.4
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCC-----eeEEEEcCCCCeEE
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGD-----PMTIAVNPSGDDFV 79 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~l~ 79 (340)
.+.++++|+|+ +.+++.+ ++.|.+|+.. +......+.+|... ...++|||||++|+
T Consensus 17 ~~~~~~~w~~d---g~~~~~~--------~~~i~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~ 77 (740)
T 4a5s_A 17 LKLYSLRWISD---HEYLYKQ--------ENNILVFNAE--------YGNSSVFLENSTFDEFGHSINDYSISPDGQFIL 77 (740)
T ss_dssp CCCCCEEECSS---SEEEEEE--------TTEEEEEETT--------TCCEEEEECTTTTTTCCSCCCEEEECTTSSEEE
T ss_pred ccccccEECCC---CcEEEEc--------CCcEEEEECC--------CCceEEEEechhhhhhcccccceEECCCCCEEE
Confidence 45678999994 4677743 4569999876 33333446666543 24488999999999
Q ss_pred EEecC---------CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeecc
Q 019482 80 CSTTN---------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE 150 (340)
Q Consensus 80 ~~~~d---------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 150 (340)
.++.+ +.+.+||+.+++... +. .+...+..++|||||+.|+.+. ++.|++|++.+++..+..
T Consensus 78 ~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~-------~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt 148 (740)
T 4a5s_A 78 LEYNYVKQWRHSYTASYDIYDLNKRQLIT-EE-------RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRIT 148 (740)
T ss_dssp EEEEEEECSSSCEEEEEEEEETTTTEECC-SS-------CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECC
T ss_pred EEECCeeeEEEccceEEEEEECCCCcEEE-cc-------cCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEc
Confidence 98876 556799999887432 21 2456799999999999999884 689999999887754432
Q ss_pred c-cCccce-----------------eEEEecCCCCeEEEeeCCC------------------------------------
Q 019482 151 P-KAHKSV-----------------LDMDFSLDSEFLATTSTDG------------------------------------ 176 (340)
Q Consensus 151 ~-~~~~~i-----------------~~~~~~~~~~~l~~~~~d~------------------------------------ 176 (340)
. ++...+ ..+.|+|||+.|+.++.|.
T Consensus 149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~ 228 (740)
T 4a5s_A 149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTV 228 (740)
T ss_dssp SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEE
T ss_pred CCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCee
Confidence 2 221112 3489999999999875321
Q ss_pred eEEEEEccC---Ce--eEEEeec-----CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc----EE--eee
Q 019482 177 SARIWKTED---GV--AWTFLTR-----NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN----KI--GHK 240 (340)
Q Consensus 177 ~v~iwd~~~---~~--~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~----~~--~~~ 240 (340)
+|++||+.+ ++ ....+.. .+...+..++|+|||+.+ ++.+.....+..|.+||+.+++ +. ..+
T Consensus 229 ~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~-~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l 307 (740)
T 4a5s_A 229 KFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERIS-LQWLRRIQNYSVMDICDYDESSGRWNCLVARQH 307 (740)
T ss_dssp EEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEE-EEEEESSTTEEEEEEEEEETTTTEEEECGGGCE
T ss_pred EEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEE-EEEeCCCCCEEEEEEEECCCCccccceeEEEEe
Confidence 588899988 63 2233332 245568999999999842 2222333456789999999887 22 112
Q ss_pred --eccCCCee-----EEEECCCCCEEE-EeeC-C--CcEEEEeccCceEeecccccccccceeeEEEecCCeE-EEEEec
Q 019482 241 --RLLRKPAS-----VLSISLDGKYLA-MGSK-D--GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRV-VLTASK 308 (340)
Q Consensus 241 --~~~~~~i~-----~~~~s~~~~~l~-~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~ 308 (340)
..+...+. .+.|+|||+.|+ ..+. + ..|++||+.+++...... + ...+..+.+ +|++. +++++.
T Consensus 308 ~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~-g--~~~v~~~~~-~d~~~i~f~~~~ 383 (740)
T 4a5s_A 308 IEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITK-G--TWEVIGIEA-LTSDYLYYISNE 383 (740)
T ss_dssp EEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCC-S--SSCEEEEEE-ECSSEEEEEESC
T ss_pred eeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEeccc-C--CEEEEEEEE-EeCCEEEEEEec
Confidence 33444443 788999999877 6653 3 368888988776654432 2 234555432 44554 445544
Q ss_pred ----CCcEEEEEecCCC
Q 019482 309 ----EWGAMITKLTVPA 321 (340)
Q Consensus 309 ----dg~i~iw~~~~~~ 321 (340)
.+...||.++...
T Consensus 384 ~~~~~~~~~ly~v~~~g 400 (740)
T 4a5s_A 384 YKGMPGGRNLYKIQLID 400 (740)
T ss_dssp GGGCTTCBEEEEEETTE
T ss_pred CCCCCceeEEEEEECCC
Confidence 3567788776543
No 164
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.90 E-value=9.4e-22 Score=167.74 Aligned_cols=287 Identities=11% Similarity=0.045 Sum_probs=178.9
Q ss_pred eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCC-eeEEEEcCCCCeEEEEecCC
Q 019482 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGD-PMTIAVNPSGDDFVCSTTNG 85 (340)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~~~~~d~ 85 (340)
+.+++|+|+ +..+++.... ++...+|.++..+.. .. .+..+... ...+.|+|||++|+.++.++
T Consensus 38 ~~~~~~Spd---G~~l~~~~~~-----~g~~~l~~~d~~~~~------~~-~l~~~~~~~~~~~~~spdg~~l~~~~~~~ 102 (396)
T 3c5m_A 38 FYQKCFTQD---GKKLLFAGDF-----DGNRNYYLLNLETQQ------AV-QLTEGKGDNTFGGFISTDERAFFYVKNEL 102 (396)
T ss_dssp TTSCCBCTT---SCEEEEEECT-----TSSCEEEEEETTTTE------EE-ECCCSSCBCTTTCEECTTSSEEEEEETTT
T ss_pred eecCcCCCC---CCEEEEEEec-----CCCceEEEEECCCCc------EE-EeecCCCCccccceECCCCCEEEEEEcCC
Confidence 567789984 4444444321 122344544433321 11 12223333 33488999999999999988
Q ss_pred CEEEEEecCceeeeeeccccCCCCCCCCCeEE-------------------EEEecCCCeEEEc-----cCCCcEEEEeC
Q 019482 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKC-------------------LSFSVDGSRFAAG-----GVDGHLRIMHW 141 (340)
Q Consensus 86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~dg~i~~~d~ 141 (340)
.|++||+.+++....... +...... +.|+|+++.++.+ ..+..|.+||+
T Consensus 103 ~l~~~d~~~~~~~~~~~~-------~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~ 175 (396)
T 3c5m_A 103 NLMKVDLETLEEQVIYTV-------DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDI 175 (396)
T ss_dssp EEEEEETTTCCEEEEEEC-------CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEET
T ss_pred cEEEEECCCCCcEEEEec-------ccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEEC
Confidence 999999987754322211 1111111 3567888776654 35678999999
Q ss_pred CCCceeeccccCccceeEEEecC-CCCeEEEeeCC------CeEEEEEccCCeeEEEeecCC-CCceeeEEEccCCCcce
Q 019482 142 PSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTD------GSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPF 213 (340)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------~~v~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~ 213 (340)
.+++..... .+...+..+.|+| +++.|+..+.+ ..|.+||+..++.. .+.... ...+..++|+|+|+.++
T Consensus 176 ~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~ 253 (396)
T 3c5m_A 176 ETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMA 253 (396)
T ss_dssp TTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEE
T ss_pred CCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEE
Confidence 887754433 4555788999999 78877766543 36888898765433 333222 23578899999999743
Q ss_pred EEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECC-CCCEEEEee----------------CCCcEEEEeccCc
Q 019482 214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL-DGKYLAMGS----------------KDGDICVVDVKKM 276 (340)
Q Consensus 214 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~----------------~dg~i~i~d~~~~ 276 (340)
+.....+...+.|++||+.+++....... . ... +.|+| ||+++++++ .+..|++||+.++
T Consensus 254 ~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 254 YVSYFKGQTDRVIYKANPETLENEEVMVM-P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp EEEEETTTCCEEEEEECTTTCCEEEEEEC-C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred EEecCCCCccceEEEEECCCCCeEEeeeC-C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence 21111111225599999998875432222 2 233 88999 999888754 3478999999887
Q ss_pred eEeeccccccccc----------ceeeEEEecCCeEEEEEec-CCcEEEEEecCCCC
Q 019482 277 EINHWSKRLHLGT----------SIALVEFCPTQRVVLTASK-EWGAMITKLTVPAD 322 (340)
Q Consensus 277 ~~~~~~~~~~~~~----------~i~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~ 322 (340)
+..... .+... .+..++|+|||+.|+.++. ++...||.++....
T Consensus 331 ~~~~l~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 331 SAQKLC--KHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp BCCEEE--ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred ceEEcc--CCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence 654322 12111 2567899999988876664 67888998876654
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.89 E-value=9.9e-22 Score=180.72 Aligned_cols=248 Identities=9% Similarity=-0.041 Sum_probs=167.0
Q ss_pred CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC---------Cc
Q 019482 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---------GH 135 (340)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~ 135 (340)
....++|+|+|++++++ |+.|++||+.+++....+...... ........++|||||++|+.++.+ +.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFD--EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTT--TCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhh--hhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 46689999999988886 899999999988765443322111 112233568999999999998875 56
Q ss_pred EEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCC-----------------
Q 019482 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE----------------- 198 (340)
Q Consensus 136 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~----------------- 198 (340)
+.+||+.+++.. .+..+...+...+|||||+.||.+. |+.|++|++.+++...........
T Consensus 94 ~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~ 171 (740)
T 4a5s_A 94 YDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171 (740)
T ss_dssp EEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred EEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence 779999988754 4555667899999999999999985 789999999887754422222211
Q ss_pred ceeeEEEccCCCcceEEEEEec-------------------------------CCcceEEEEECCC---Cc--EEeeeec
Q 019482 199 KIELCRFSKDGTKPFLFCTVQR-------------------------------GDKALLAVYDIST---WN--KIGHKRL 242 (340)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~~~~~-------------------------------~~d~~i~i~d~~~---~~--~~~~~~~ 242 (340)
....+.|||||+.+.+...-.. .....|++||+.+ ++ ....+..
T Consensus 172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~ 251 (740)
T 4a5s_A 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA 251 (740)
T ss_dssp SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC
T ss_pred CCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC
Confidence 1235899999997433211000 0122689999998 73 1223332
Q ss_pred ------cCCCeeEEEECCCCCEEEEeeC----CCcEEEEeccCce----Eeecc---ccccccccee-----eEEEecCC
Q 019482 243 ------LRKPASVLSISLDGKYLAMGSK----DGDICVVDVKKME----INHWS---KRLHLGTSIA-----LVEFCPTQ 300 (340)
Q Consensus 243 ------~~~~i~~~~~s~~~~~l~~~~~----dg~i~i~d~~~~~----~~~~~---~~~~~~~~i~-----~~~~~~~~ 300 (340)
+...+..++|+|||+.++.... +..|++||+.+++ +.... ...+ ...+. ..+|+|||
T Consensus 252 ~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~-~~~v~~~~~~~p~fspDG 330 (740)
T 4a5s_A 252 PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST-TGWVGRFRPSEPHFTLDG 330 (740)
T ss_dssp CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS-SSCSSSSSCCCCEECTTS
T ss_pred CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC-CceEccCcCCCceEcCCC
Confidence 5667899999999997665533 3469999999887 32221 1223 23343 78999999
Q ss_pred eEEE-EEe-cCCcEEEEEecC
Q 019482 301 RVVL-TAS-KEWGAMITKLTV 319 (340)
Q Consensus 301 ~~l~-~~~-~dg~i~iw~~~~ 319 (340)
+.|+ ..+ .+|.-.||-++.
T Consensus 331 ~~l~~~~s~~~G~~~l~~~~~ 351 (740)
T 4a5s_A 331 NSFYKIISNEEGYRHICYFQI 351 (740)
T ss_dssp SEEEEEEECTTSCEEEEEEET
T ss_pred CEEEEEEEcCCCceEEEEEEC
Confidence 8776 555 456555555543
No 166
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.89 E-value=4e-20 Score=153.67 Aligned_cols=247 Identities=11% Similarity=-0.017 Sum_probs=183.6
Q ss_pred CCCeeEEEEcCCCCeEEEEecC------------------------CCEEEEEecCceeeeeeccccCCCCCCCCCeEEE
Q 019482 63 EGDPMTIAVNPSGDDFVCSTTN------------------------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCL 118 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d------------------------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 118 (340)
-+.+.+++++|+|+++++...+ +.|.+||..+++....... .+...+..+
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~------~~~~~p~gi 96 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK------NLFYLPHGL 96 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT------TTCSSEEEE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC------CccCCceEE
Confidence 4569999999999988887777 4699999987776443321 133578899
Q ss_pred EEecCCCeEEEccCCCcEEEEeCCCCc-eeecc---------ccCccceeEEEecC-CCCeEEEee-CCCeEEEEEccCC
Q 019482 119 SFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDE---------PKAHKSVLDMDFSL-DSEFLATTS-TDGSARIWKTEDG 186 (340)
Q Consensus 119 ~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~---------~~~~~~i~~~~~~~-~~~~l~~~~-~d~~v~iwd~~~~ 186 (340)
+++|+|+++++...++.|++||..... .+..+ ..+......++++| +++++++.+ .++.|++|| .++
T Consensus 97 a~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g 175 (329)
T 3fvz_A 97 SIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSG 175 (329)
T ss_dssp EECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTS
T ss_pred EECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCC
Confidence 999999988888888999999976542 33322 12223688999999 788888876 689999999 567
Q ss_pred eeEEEeecCC---------CCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee--ccCCCeeEEEECC-
Q 019482 187 VAWTFLTRNS---------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR--LLRKPASVLSISL- 254 (340)
Q Consensus 187 ~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~s~- 254 (340)
+.+..+.... -..+..++++|++..+ .++...++.|++||..+++.+..+. .+...+..++++|
T Consensus 176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l----~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg 251 (329)
T 3fvz_A 176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQL----CVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPG 251 (329)
T ss_dssp CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEE----EEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETT
T ss_pred CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEE----EEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCC
Confidence 7766664211 1237899999994432 5667788999999999888877664 3445688899999
Q ss_pred -----CCCEEEEeeCCCcEEEEeccCceEeeccc--ccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 255 -----DGKYLAMGSKDGDICVVDVKKMEINHWSK--RLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 255 -----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
+|+..++...+..|++||..+++.+..+. ..+ ...+.+++++|+|.++++...++.|++|++....
T Consensus 252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~-~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~~ 324 (329)
T 3fvz_A 252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKH-FDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEKM 324 (329)
T ss_dssp EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSC-CSSEEEEEECTTSEEEEEESSSCCEEEEEEEECS
T ss_pred EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCc-cCCeeEEEECCCCCEEEEECCCCEEEEEeCCccc
Confidence 33333333445689999999998877653 123 3568999999999999999999999999987543
No 167
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.89 E-value=1.3e-19 Score=147.58 Aligned_cols=247 Identities=11% Similarity=0.045 Sum_probs=175.4
Q ss_pred cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEe-cCCCeEEEccC-CCcEEE
Q 019482 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFS-VDGSRFAAGGV-DGHLRI 138 (340)
Q Consensus 61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~-dg~i~~ 138 (340)
++...+.+++++|+|+++++...++.|.+||... +....+... .....+...+.++++. ++++++++... ++.|.+
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~-~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGEC-GKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCB-SSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEEeccc-CCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3456789999999999888888889999999873 333333211 1111233568899995 67766666543 789999
Q ss_pred EeCCCCceeecccc-CccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeec-CCCCceeeEEEccCCCcceEEE
Q 019482 139 MHWPSLRIILDEPK-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFC 216 (340)
Q Consensus 139 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~ 216 (340)
|| .+++.+..+.. +...+..++++|+++++++...++.|++||.. ++.+..+.. .....+..++++|+++.
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l----- 177 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEI----- 177 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEE-----
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCE-----
Confidence 99 55665554432 23468899999999988887778999999964 555555542 22345889999999874
Q ss_pred EEecCCcceEEEEECCCCcEEeeeecc--CCCeeEEEECCCCCEEEEeeCCC-cEEEEeccCceEeecccccccccceee
Q 019482 217 TVQRGDKALLAVYDISTWNKIGHKRLL--RKPASVLSISLDGKYLAMGSKDG-DICVVDVKKMEINHWSKRLHLGTSIAL 293 (340)
Q Consensus 217 ~~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~i~~ 293 (340)
.++...++.|++||.. ++.+..+... ...+..++++|+|+++++...++ .|.+||.. ++.+..+........+.+
T Consensus 178 ~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~ 255 (286)
T 1q7f_A 178 FISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFD 255 (286)
T ss_dssp EEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEE
T ss_pred EEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCccee
Confidence 4566678899999974 4555455433 25678999999999888887776 99999964 444444432221234779
Q ss_pred EEEecCCeEEEEEecCCcEEEEEecC
Q 019482 294 VEFCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 294 ~~~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
++++|+|+++++ +.|+.|++|++..
T Consensus 256 i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 256 VALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred EEECCCCcEEEE-CCCCeEEEEEccc
Confidence 999999997777 5799999999854
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.88 E-value=1.2e-19 Score=165.08 Aligned_cols=288 Identities=15% Similarity=0.046 Sum_probs=185.6
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCee---------EEEEc--
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPM---------TIAVN-- 72 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~---------~~~~~-- 72 (340)
...+..++|++ +..+++.+. ...++...||....... ...+..|...+. ...|+
T Consensus 23 ~~~~~~~~~s~---~~~~~~~~~----~~~~~~~~l~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~S 87 (662)
T 3azo_A 23 SGRPACVGAVG---DEVWWVAPR----PAEAGRATLVRRRADGA--------EESALPAPWNVRNRVFEYSGFPWAGVPR 87 (662)
T ss_dssp CSCCEEEEEET---TEEEEEEEE----TTTTTEEEEEEECTTSC--------EEESSCTTCCBCCCGGGTCCCCEEEECC
T ss_pred CCccceeEEcC---CeEEEEecC----cccCCcEEEEEECCCCC--------cceeCCCCccccccccccCCccceeeee
Confidence 45678888886 334444331 12355688888742211 233445555555 56665
Q ss_pred CCCCe-EEEEec-CCCEEEEEec--C-ceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC----------CcEE
Q 019482 73 PSGDD-FVCSTT-NGGCKLFEVY--G-GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----------GHLR 137 (340)
Q Consensus 73 ~~~~~-l~~~~~-d~~i~iw~~~--~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~ 137 (340)
|||+. |+.++. +..|.++++. + +. ...+... ....+...+..++|+|||+.|++++.+ ..|+
T Consensus 88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~--~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~ 164 (662)
T 3azo_A 88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPV--SAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLA 164 (662)
T ss_dssp SSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCC--CCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEE
T ss_pred cCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCC--ccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEE
Confidence 99998 776654 4456666654 2 22 2222110 000144578899999999999988876 5899
Q ss_pred EEeCCC------Cceeeccc-cCccceeEEEecCCCCeEEEeeCC--------CeEEEEEcc-CC--eeEEEeecCCCCc
Q 019482 138 IMHWPS------LRIILDEP-KAHKSVLDMDFSLDSEFLATTSTD--------GSARIWKTE-DG--VAWTFLTRNSDEK 199 (340)
Q Consensus 138 ~~d~~~------~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d--------~~v~iwd~~-~~--~~~~~~~~~~~~~ 199 (340)
+||+.+ ++. ..+. .+...+..++|+|||++|+.++.+ ..|++||+. ++ .....+...+...
T Consensus 165 ~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~ 243 (662)
T 3azo_A 165 AVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEA 243 (662)
T ss_dssp EEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBC
T ss_pred EEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCce
Confidence 999987 544 3444 455678889999999999987754 379999998 56 2334444444567
Q ss_pred eeeEEEccCCCcceEEEEEecCCcc--eEEEEECCCCcEEeeeeccCCC--------eeEEEECCCCCEEEEeeCCCcEE
Q 019482 200 IELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDISTWNKIGHKRLLRKP--------ASVLSISLDGKYLAMGSKDGDIC 269 (340)
Q Consensus 200 v~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~--------i~~~~~s~~~~~l~~~~~dg~i~ 269 (340)
+..+.|+|||+. ++++..++ .|.+||+.+++.......+... +..++|+|+++++++++. +.++
T Consensus 244 ~~~~~~spdg~l-----~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~ 317 (662)
T 3azo_A 244 IAQAEWAPDGSL-----IVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAV 317 (662)
T ss_dssp EEEEEECTTSCE-----EEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCE
T ss_pred EcceEECCCCeE-----EEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccE
Confidence 899999999993 45556666 7777887676654333322211 467889999999999998 9999
Q ss_pred EE--eccCceEeecccccccccceeeE-EEecCCeEEEEEecCCcEEEEEecC
Q 019482 270 VV--DVKKMEINHWSKRLHLGTSIALV-EFCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 270 i~--d~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
|| |+.+++. ..+. .+ ...+..+ +++++.-++++++.+....||.++.
T Consensus 318 l~~~d~~~~~~-~~l~-~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~ 367 (662)
T 3azo_A 318 LGILDPESGEL-VDAA-GP-WTEWAATLTVSGTRAVGVAASPRTAYEVVELDT 367 (662)
T ss_dssp EEEEETTTTEE-EECC-SS-CCEEEEEEEEETTEEEEEEEETTEEEEEEEEET
T ss_pred EEEEECCCCcE-EEec-CC-CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEEC
Confidence 99 6556664 3332 23 3456666 5544444555666676677777654
No 169
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.87 E-value=7.4e-20 Score=154.35 Aligned_cols=249 Identities=10% Similarity=0.062 Sum_probs=159.5
Q ss_pred eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCe--EEEEe-
Q 019482 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDD--FVCST- 82 (340)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~~~~- 82 (340)
.+..++|+|+ ++++++++. + .+.+|+++..+ .+ ........+ +.+..++|+|+|++ ++++.
T Consensus 41 ~~~~~a~spd---g~~l~~~~~------~-~v~~~~~~~~g-~~----~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~ 104 (365)
T 1jof_A 41 PISWMTFDHE---RKNIYGAAM------K-KWSSFAVKSPT-EI----VHEASHPIG-GHPRANDADTNTRAIFLLAAKQ 104 (365)
T ss_dssp CCSEEEECTT---SSEEEEEEB------T-EEEEEEEEETT-EE----EEEEEEECC-SSGGGGCTTSCCEEEEEEECSS
T ss_pred CCcEEEECCC---CCEEEEEcc------c-eEEEEEECCCC-CE----EEeeEeecC-CCCccEEECCCCCEEEEEEecC
Confidence 5677888884 344443332 2 68999886322 11 111111111 23677999999994 44553
Q ss_pred ------------cCCCEEEEEecC-ceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc-CCCcEEEEeCC-CCcee
Q 019482 83 ------------TNGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWP-SLRII 147 (340)
Q Consensus 83 ------------~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~-~~~~~ 147 (340)
.++.+.+|++.. ++....+.... .++...+.+++|+|||++|+++. .++.|++|++. +++..
T Consensus 105 ~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~ 181 (365)
T 1jof_A 105 PPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYE---YQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE 181 (365)
T ss_dssp TTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEE---CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE
T ss_pred CcceeccceeecCCceEEEEccCCCCcCcceEeeEE---eCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEE
Confidence 688999999974 44322221100 01346789999999999887765 36789999998 66542
Q ss_pred --eccc--cCccceeEEEecCCCCeEEEeeC-CCeEEEEEcc--CCeeE---EEeec---C---CCC------ceeeEE-
Q 019482 148 --LDEP--KAHKSVLDMDFSLDSEFLATTST-DGSARIWKTE--DGVAW---TFLTR---N---SDE------KIELCR- 204 (340)
Q Consensus 148 --~~~~--~~~~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~~--~~~~~---~~~~~---~---~~~------~v~~~~- 204 (340)
..+. .+...+..++|+|+|+++++++. ++.|.+|+++ +++.. ..+.. . +.. .+..++
T Consensus 182 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 261 (365)
T 1jof_A 182 LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA 261 (365)
T ss_dssp EEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE
T ss_pred EeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEE
Confidence 2222 12446889999999999887764 6899999875 45442 12221 1 111 478899
Q ss_pred EccCCCcceEEEEEecCCc----ceEEEEECC-CCcEEee---eeccCCCeeEEEECC---CCCEEEEeeCC-CcEEEEe
Q 019482 205 FSKDGTKPFLFCTVQRGDK----ALLAVYDIS-TWNKIGH---KRLLRKPASVLSISL---DGKYLAMGSKD-GDICVVD 272 (340)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~d----~~i~i~d~~-~~~~~~~---~~~~~~~i~~~~~s~---~~~~l~~~~~d-g~i~i~d 272 (340)
|+|||+.++ ....+.+ +.|.+|++. +++.... ...+......++|+| ||++|++++.+ +.|.+|+
T Consensus 262 ~spdG~~l~---v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 262 LTFSGKYMF---ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp ECTTSSEEE---EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred ECCCCCEEE---EECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEE
Confidence 999999632 1111222 289999996 5654321 223444567889999 89999999864 8999999
Q ss_pred ccCc
Q 019482 273 VKKM 276 (340)
Q Consensus 273 ~~~~ 276 (340)
+...
T Consensus 339 ~~~~ 342 (365)
T 1jof_A 339 WKDE 342 (365)
T ss_dssp EETT
T ss_pred Echh
Confidence 8765
No 170
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.87 E-value=1.6e-20 Score=159.79 Aligned_cols=251 Identities=10% Similarity=-0.056 Sum_probs=163.2
Q ss_pred EEEecCCCCeeE-----EEEcCCCCeEEEEec-CCC--EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEE
Q 019482 57 YVFDESEGDPMT-----IAVNPSGDDFVCSTT-NGG--CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA 128 (340)
Q Consensus 57 ~~~~~h~~~v~~-----~~~~~~~~~l~~~~~-d~~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 128 (340)
..+..|...... .+|+|||++|+.++. ++. |.+||+.+++...... .+...+..+.|+||++.|+
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~-------~~~~~~~~~~~spdg~~l~ 96 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE-------GRGDNTFGGFLSPDDDALF 96 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCC-------SSCBCSSSCEECTTSSEEE
T ss_pred EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeee-------CCCCCccceEEcCCCCEEE
Confidence 345556555555 889999999998887 664 7778887776433221 1223344578999999999
Q ss_pred EccCCCcEEEEeCCCCceeeccccCccceeEE--EecCCCCeEEEe----------------------eCCCeEEEEEcc
Q 019482 129 AGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM--DFSLDSEFLATT----------------------STDGSARIWKTE 184 (340)
Q Consensus 129 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~--~~~~~~~~l~~~----------------------~~d~~v~iwd~~ 184 (340)
.++.++.|++||+.+++.......+...+... .++|+++.++.. ..+..|.+||+.
T Consensus 97 ~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 176 (388)
T 3pe7_A 97 YVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK 176 (388)
T ss_dssp EEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT
T ss_pred EEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECC
Confidence 99989999999999987665444444434333 348999988742 244789999999
Q ss_pred CCeeEEEeecCCCCceeeEEEcc-CCCcceEEEEEecCC---cceEEEEECCCCcEEeeeeccC--CCeeEEEECCCCCE
Q 019482 185 DGVAWTFLTRNSDEKIELCRFSK-DGTKPFLFCTVQRGD---KALLAVYDISTWNKIGHKRLLR--KPASVLSISLDGKY 258 (340)
Q Consensus 185 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~s~~~~~ 258 (340)
+++...... ....+..++|+| +|+.+.+ ...... ...|.++|...++.. .+..+. ..+..+.|+|||+.
T Consensus 177 ~g~~~~l~~--~~~~~~~~~~sp~dg~~l~~--~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~ 251 (388)
T 3pe7_A 177 TGESTVILQ--ENQWLGHPIYRPYDDSTVAF--CHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSA 251 (388)
T ss_dssp TCCEEEEEE--ESSCEEEEEEETTEEEEEEE--EECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSC
T ss_pred CCceEEeec--CCccccccEECCCCCCEEEE--EEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCE
Confidence 887654443 334688999999 9986321 111111 447888888766543 233333 24778899999998
Q ss_pred EEEeeC-CC----cEEEEeccCceEeecccc-cc--cccceeeEEEecCCeEEEEE---------ecCCcEEEEEecC
Q 019482 259 LAMGSK-DG----DICVVDVKKMEINHWSKR-LH--LGTSIALVEFCPTQRVVLTA---------SKEWGAMITKLTV 319 (340)
Q Consensus 259 l~~~~~-dg----~i~i~d~~~~~~~~~~~~-~~--~~~~i~~~~~~~~~~~l~~~---------~~dg~i~iw~~~~ 319 (340)
|+..+. ++ .|++||+.+++....... .+ .......++|+|||+.|+.. ..+..|++|++..
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 252 LVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp EEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred EEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence 866543 22 399999998875432211 10 00112334799999988754 4456788888764
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.86 E-value=3e-20 Score=169.03 Aligned_cols=251 Identities=10% Similarity=0.015 Sum_probs=173.3
Q ss_pred CeeeEEEecCCCCeeEEEEcCCCCeEEEE--ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeE---------EEEEe
Q 019482 53 PLVTYVFDESEGDPMTIAVNPSGDDFVCS--TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK---------CLSFS 121 (340)
Q Consensus 53 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~~~~ 121 (340)
+.....+.+|...+..++|++++-+++.. +.++...||....+.....+.. +...+. ...|+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~ 85 (662)
T 3azo_A 13 PIDAALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALP-------APWNVRNRVFEYSGFPWAGV 85 (662)
T ss_dssp SCCHHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSC-------TTCCBCCCGGGTCCCCEEEE
T ss_pred CCCHHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCC-------CCccccccccccCCccceee
Confidence 33334466789999999999876666666 4578899999744433333322 222333 45565
Q ss_pred --cCCCe-EEEccC-CCcEEEEeCC--C-Cceeecccc-----CccceeEEEecCCCCeEEEeeCC----------CeEE
Q 019482 122 --VDGSR-FAAGGV-DGHLRIMHWP--S-LRIILDEPK-----AHKSVLDMDFSLDSEFLATTSTD----------GSAR 179 (340)
Q Consensus 122 --~~~~~-l~~~~~-dg~i~~~d~~--~-~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d----------~~v~ 179 (340)
|||+. |+.++. +..|.++++. . ++ ...+.. +...+..++|+|||+.|++++.+ ..|+
T Consensus 86 ~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~ 164 (662)
T 3azo_A 86 PRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLA 164 (662)
T ss_dssp CCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEE
T ss_pred eecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEE
Confidence 99998 766543 5667777765 2 33 333433 44578899999999999998876 5899
Q ss_pred EEEccC------CeeEEEee-cCCCCceeeEEEccCCCcceEEEEEecCC--------cceEEEEECC-CC---cEEeee
Q 019482 180 IWKTED------GVAWTFLT-RNSDEKIELCRFSKDGTKPFLFCTVQRGD--------KALLAVYDIS-TW---NKIGHK 240 (340)
Q Consensus 180 iwd~~~------~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--------d~~i~i~d~~-~~---~~~~~~ 240 (340)
+||+.+ ++. ..+. .+ ...+..++|+|||+.+ +..+. ...|.+||+. ++ +.....
T Consensus 165 ~~~~~~~~~~~~~~~-~~l~~~~-~~~~~~~~~SpDG~~l-----a~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~ 237 (662)
T 3azo_A 165 AVPLDGSAAADRSAV-RELSDDA-HRFVTGPRLSPDGRQA-----VWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL 237 (662)
T ss_dssp EEETTSTTTTCGGGS-EESSCSC-SSEECCCEECTTSSEE-----EEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred EEECCCCccccCCce-eEEEecC-CCcccCceECCCCCEE-----EEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC
Confidence 999987 544 3443 32 3568889999999973 32221 2589999999 56 343333
Q ss_pred eccCCCeeEEEECCCCCEEEEeeCCC--cEEEEeccCceEeeccccccccc-------ceeeEEEecCCeEEEEEecCCc
Q 019482 241 RLLRKPASVLSISLDGKYLAMGSKDG--DICVVDVKKMEINHWSKRLHLGT-------SIALVEFCPTQRVVLTASKEWG 311 (340)
Q Consensus 241 ~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~l~~~~~dg~ 311 (340)
..+...+..+.|+|||+++++++.++ .|.+||+.+++...... .+... .+..++|+|+++++++++. +.
T Consensus 238 ~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~ 315 (662)
T 3azo_A 238 GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR-REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA 315 (662)
T ss_dssp EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC-CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS
T ss_pred CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc-ccccccCccccccCceEeEeCCCEEEEEEEc-Cc
Confidence 44467899999999999888888888 67777776776554432 22111 1568999999999999999 99
Q ss_pred EEEEEecCC
Q 019482 312 AMITKLTVP 320 (340)
Q Consensus 312 i~iw~~~~~ 320 (340)
++||.++..
T Consensus 316 ~~l~~~d~~ 324 (662)
T 3azo_A 316 AVLGILDPE 324 (662)
T ss_dssp CEEEEEETT
T ss_pred cEEEEEECC
Confidence 999988754
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.85 E-value=3.9e-18 Score=141.99 Aligned_cols=283 Identities=12% Similarity=-0.008 Sum_probs=184.9
Q ss_pred CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (340)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (340)
..+|.+++|++... .++.. ..++.++.|.- .....+..+...+.+++|+|+|++++++..
T Consensus 5 ~~~~~~~~~~~~~~---~~~~~------~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~ 64 (333)
T 2dg1_A 5 QQDLPTLFYSGKSN---SAVPI------ISESELQTITA-----------EPWLEISKKGLQLEGLNFDRQGQLFLLDVF 64 (333)
T ss_dssp -CCCCBCCSCGGGG---CSSCC------CCGGGSCEEEC-----------EEEEEEESSCCCEEEEEECTTSCEEEEETT
T ss_pred ccccceeeecCCcc---ceeEE------eecccCccccc-----------ceeEEEeccCccccCcEECCCCCEEEEECC
Confidence 46688899998543 22211 24455777721 122345567777899999999997778888
Q ss_pred CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC----CcEEEEeCCCCceeeccc--cCccce
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----GHLRIMHWPSLRIILDEP--KAHKSV 157 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~--~~~~~i 157 (340)
++.|.+||..+++...... .+...+.+++++|+++++++...+ +.|.+||.+++.....+. .....+
T Consensus 65 ~~~i~~~d~~~~~~~~~~~-------~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 65 EGNIFKINPETKEIKRPFV-------SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TCEEEEECTTTCCEEEEEE-------CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCEEEEEeCCCCcEEEEee-------CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 8899999998766433221 134678999999999888777666 689999988766432221 223468
Q ss_pred eEEEecCCCCeEEEeeC------CCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEEC
Q 019482 158 LDMDFSLDSEFLATTST------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231 (340)
Q Consensus 158 ~~~~~~~~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~ 231 (340)
.+++++|+++++++... .+.|..+|.++++...... . ...+..++|+|+++.+ .++...++.|.+||+
T Consensus 138 ~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~-~~~~~~i~~~~dg~~l----~v~~~~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-N-ISVANGIALSTDEKVL----WVTETTANRLHRIAL 211 (333)
T ss_dssp EEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-E-ESSEEEEEECTTSSEE----EEEEGGGTEEEEEEE
T ss_pred cceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec-C-CCcccceEECCCCCEE----EEEeCCCCeEEEEEe
Confidence 99999999987776653 3556666665544433222 2 2347889999999853 244455789999999
Q ss_pred CC-CcEEeee-----ecc--CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccc----ccceeeEEEecC
Q 019482 232 ST-WNKIGHK-----RLL--RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL----GTSIALVEFCPT 299 (340)
Q Consensus 232 ~~-~~~~~~~-----~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~i~~~~~~~~ 299 (340)
++ +..+..+ ... ...+..++++++|+++++...++.|.+||.. ++.+..+..... ...+.+++|+||
T Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred cCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCC
Confidence 64 3322111 111 1356789999999988887778899999984 444443321110 015889999999
Q ss_pred CeEEEEEecCC----cEEEEEecCC
Q 019482 300 QRVVLTASKEW----GAMITKLTVP 320 (340)
Q Consensus 300 ~~~l~~~~~dg----~i~iw~~~~~ 320 (340)
++.|+.++.++ .-.||.++..
T Consensus 291 g~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 291 TNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp SCEEEEEEECGGGTCCEEEEEEECS
T ss_pred CCEEEEEeCccCCCCCceEEEEecc
Confidence 86666555543 3456666544
No 173
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.84 E-value=3.5e-18 Score=143.03 Aligned_cols=224 Identities=13% Similarity=0.072 Sum_probs=153.1
Q ss_pred CCeeEEEEcCCCCeEEEEecC---C--CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC-----
Q 019482 64 GDPMTIAVNPSGDDFVCSTTN---G--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----- 133 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d---~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----- 133 (340)
..+..++|+|||++|+.++.+ + .|.+|++.+++..... . ... +..++|+|||+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~-~-------~~~-~~~~~wspdg~~l~~~~~~~~~~~ 129 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKIL-E-------AKN-IRSLEWNEDSRKLLIVGFKRREDE 129 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEE-E-------ESE-EEEEEECTTSSEEEEEEECCCC--
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEE-c-------CCC-ccceeECCCCCEEEEEEccCCCcC
Confidence 458899999999999887654 3 3777787776543222 1 123 8899999999988887632
Q ss_pred ----------------------CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCC-------eEEEEEcc
Q 019482 134 ----------------------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG-------SARIWKTE 184 (340)
Q Consensus 134 ----------------------g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-------~v~iwd~~ 184 (340)
..|.+||+.+++.+..+.. . .+..+.|+||| +++++..+. ...+|.+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d 206 (347)
T 2gop_A 130 DFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE 206 (347)
T ss_dssp -------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE
T ss_pred CcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC
Confidence 5699999988876333433 3 78899999999 777776542 34555554
Q ss_pred CCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCC-------cceEEEEECCCCcEEeeeeccCCCeeE-EEECCCC
Q 019482 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-------KALLAVYDISTWNKIGHKRLLRKPASV-LSISLDG 256 (340)
Q Consensus 185 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~~i~~-~~~s~~~ 256 (340)
+++. ..+..+ ..+..+ +|+|+.++ +.+.. ...|.+|| +++.......+...+.. +.|+ ++
T Consensus 207 ~~~~-~~l~~~--~~~~~~--spdg~~l~----~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg 274 (347)
T 2gop_A 207 DGKE-EKMFEK--VSFYAV--DSDGERIL----LYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK 274 (347)
T ss_dssp TTEE-EEEEEE--ESEEEE--EECSSCEE----EEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE
T ss_pred CCce-EEeccC--cceeeE--CCCCCEEE----EEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc
Confidence 5543 334332 334444 99999732 22211 35788888 55554444445567776 8999 88
Q ss_pred CEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcE-EEEEec
Q 019482 257 KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGA-MITKLT 318 (340)
Q Consensus 257 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i-~iw~~~ 318 (340)
++++++.++.++|| +.+++..... .+ ...|.+++|+| .++++++.++.. .||.++
T Consensus 275 -~~~~~~~~~~~~l~-~~~g~~~~~~--~~-~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 275 -VYFTLFEEGSVNLY-IWDGEIKPIA--KG-RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp -EEEEEEETTEEEEE-EESSSEEEEE--CS-SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred -EEEEEecCCcEEEE-EcCCceEEEe--cC-CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 88999999999999 8766554332 22 45789999999 677777777665 888886
No 174
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.84 E-value=2.1e-18 Score=144.88 Aligned_cols=265 Identities=11% Similarity=0.042 Sum_probs=177.3
Q ss_pred CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec----------CCCEEEEEecCceeeeeec
Q 019482 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT----------NGGCKLFEVYGGATDINLL 102 (340)
Q Consensus 33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~----------d~~i~iw~~~~~~~~~~~~ 102 (340)
.++.+.+|+.. +......+..+..+ .++|+|||++++++.. ++.|.+||..+.+....+.
T Consensus 29 ~d~~v~v~D~~--------t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~ 98 (361)
T 2oiz_A 29 TESRVHVYDYT--------NGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEIS 98 (361)
T ss_dssp GGCEEEEEETT--------TCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEE
T ss_pred ccCeEEEEECC--------CCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEE
Confidence 46678888654 22223445555444 8999999999998863 5679999998877665543
Q ss_pred cccCCCCCCCCCeEEEEEecCCCeEEEccC--CCcEEEEeCCCCceeec-cccCccceeEEEecCCC-CeEEEeeCCCeE
Q 019482 103 AKKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRIMHWPSLRIILD-EPKAHKSVLDMDFSLDS-EFLATTSTDGSA 178 (340)
Q Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v 178 (340)
.... ...+......++++|||++|+++.. ++.|.+||+.+++.+.. +.. . ....+.+.|++ ..+++.+.||.+
T Consensus 99 ~~~~-~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~ 175 (361)
T 2oiz_A 99 LPPK-RVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGL 175 (361)
T ss_dssp ECTT-BCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSE
T ss_pred cCcc-ccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcE
Confidence 2110 1112345678999999999998864 57899999999887765 432 2 22335677765 567888899999
Q ss_pred EEEEccC-CeeEEEee----cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEE--eeeecc--------
Q 019482 179 RIWKTED-GVAWTFLT----RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI--GHKRLL-------- 243 (340)
Q Consensus 179 ~iwd~~~-~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~--~~~~~~-------- 243 (340)
.+|++.. ++...... .........+.+++++.. ++..+.++.+.++|+...... ..+...
T Consensus 176 ~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~ 250 (361)
T 2oiz_A 176 LTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDK-----AHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKN 250 (361)
T ss_dssp EEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSE-----EEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTT
T ss_pred EEEEECCCCcEeeeccccceEcCCCCceEEEecccCCE-----EEEEeCCCeEEEEEecCCCceecccccccCccccccc
Confidence 9999865 55442211 001111223445677765 333346788999998755421 111110
Q ss_pred --CCCeeEEEECCCCCEEEEeeC-----------CCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCC
Q 019482 244 --RKPASVLSISLDGKYLAMGSK-----------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW 310 (340)
Q Consensus 244 --~~~i~~~~~s~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 310 (340)
......++++|+++.++++.. .+.|.+||+.+++.+..+.. + . +.+++|+|||++|++++. +
T Consensus 251 ~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~-~--~-p~~ia~spdg~~l~v~n~-~ 325 (361)
T 2oiz_A 251 WVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG-R--D-ALSMTIDQQRNLMLTLDG-G 325 (361)
T ss_dssp CEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC-T--T-CCEEEEETTTTEEEEECS-S
T ss_pred cccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec-C--C-eeEEEECCCCCEEEEeCC-C
Confidence 011223789999888887653 34799999999998887643 3 3 999999999999998887 9
Q ss_pred cEEEEEecCC
Q 019482 311 GAMITKLTVP 320 (340)
Q Consensus 311 ~i~iw~~~~~ 320 (340)
.|.+||....
T Consensus 326 ~v~v~D~~t~ 335 (361)
T 2oiz_A 326 NVNVYDISQP 335 (361)
T ss_dssp CEEEEECSSS
T ss_pred eEEEEECCCC
Confidence 9999998654
No 175
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.83 E-value=1.7e-19 Score=153.75 Aligned_cols=238 Identities=9% Similarity=-0.063 Sum_probs=158.2
Q ss_pred CeeEEEEcCCCCeEEEEecC---CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC
Q 019482 65 DPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (340)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~ 141 (340)
.+..++|+|||++|+..... ..|.+||+.+++... +... +......+.|+|||++|+.++.++.|++||+
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l~~~------~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~ 109 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-LTEG------KGDNTFGGFISTDERAFFYVKNELNLMKVDL 109 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-CCCS------SCBCTTTCEECTTSSEEEEEETTTEEEEEET
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-eecC------CCCccccceECCCCCEEEEEEcCCcEEEEEC
Confidence 37788999999998877543 367888887766432 2110 1112233789999999999988889999999
Q ss_pred CCCceeeccccCccceeE-------------------EEecCCCCeEEEe-----eCCCeEEEEEccCCeeEEEeecCCC
Q 019482 142 PSLRIILDEPKAHKSVLD-------------------MDFSLDSEFLATT-----STDGSARIWKTEDGVAWTFLTRNSD 197 (340)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~-------------------~~~~~~~~~l~~~-----~~d~~v~iwd~~~~~~~~~~~~~~~ 197 (340)
.+++.......+...... +.|+|+++.++.. ..+..|++||+.+++...... ..
T Consensus 110 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~--~~ 187 (396)
T 3c5m_A 110 ETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ--DT 187 (396)
T ss_dssp TTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE--ES
T ss_pred CCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc--CC
Confidence 887754433322222222 4678888877654 356789999998887655443 33
Q ss_pred CceeeEEEcc-CCCcceEEEEEecCCc----ceEEEEECCCCcEEeeeecc-CCCeeEEEECCCCCEEEEeeCC-----C
Q 019482 198 EKIELCRFSK-DGTKPFLFCTVQRGDK----ALLAVYDISTWNKIGHKRLL-RKPASVLSISLDGKYLAMGSKD-----G 266 (340)
Q Consensus 198 ~~v~~~~~~~-~~~~~~~~~~~~~~~d----~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~d-----g 266 (340)
..+..+.|+| ++..+++ ...... ..|.+||+..++........ ...+..+.|+|+|++|+.++.+ +
T Consensus 188 ~~~~~~~~sp~dg~~l~~---~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 264 (396)
T 3c5m_A 188 AWLGHPIYRPFDDSTVGF---CHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDR 264 (396)
T ss_dssp SCEEEEEEETTEEEEEEE---EECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCE
T ss_pred cccccceECCCCCCEEEE---EecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccc
Confidence 4688999999 7775322 222222 57999998766533222211 2357789999999988777543 4
Q ss_pred cEEEEeccCceEeecccccccccceeeEEEec-CCeEEEEEe----------------cCCcEEEEEecC
Q 019482 267 DICVVDVKKMEINHWSKRLHLGTSIALVEFCP-TQRVVLTAS----------------KEWGAMITKLTV 319 (340)
Q Consensus 267 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~----------------~dg~i~iw~~~~ 319 (340)
.|++||+.+++...... .. ... +.|+| ||+++++++ .+..|++|++..
T Consensus 265 ~l~~~d~~~g~~~~l~~-~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~ 329 (396)
T 3c5m_A 265 VIYKANPETLENEEVMV-MP---PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA 329 (396)
T ss_dssp EEEEECTTTCCEEEEEE-CC---SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred eEEEEECCCCCeEEeee-CC---CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence 49999998876544321 11 123 89999 999888765 236788887753
No 176
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.83 E-value=2.2e-17 Score=135.13 Aligned_cols=238 Identities=11% Similarity=-0.029 Sum_probs=166.9
Q ss_pred EEecCCCCeeEEEEcCCCC-eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcE
Q 019482 58 VFDESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL 136 (340)
Q Consensus 58 ~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 136 (340)
.+..+.....+++|+|+|+ .++++..++.|..|+..++ ...+.. +...+.+++++|+|+++++...++.|
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~-------~~~~~~~l~~~~dg~l~v~~~~~~~i 92 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMH-------PSHHQNGHCLNKQGHLIACSHGLRRL 92 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEES-------SCSSEEEEEECTTCCEEEEETTTTEE
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEEC-------CCCCcceeeECCCCcEEEEecCCCeE
Confidence 3445667788999999998 6778888889999999876 222221 34678999999999988877777899
Q ss_pred EEEeCCCCceeeccccC----ccceeEEEecCCCCeEEE----ee-------------CCCeEEEEEccCCeeEEEeecC
Q 019482 137 RIMHWPSLRIILDEPKA----HKSVLDMDFSLDSEFLAT----TS-------------TDGSARIWKTEDGVAWTFLTRN 195 (340)
Q Consensus 137 ~~~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~----~~-------------~d~~v~iwd~~~~~~~~~~~~~ 195 (340)
.+||..+++........ ...+..++++|+|+++++ ++ ..+.|..++.. ++. ..+..
T Consensus 93 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~- 169 (296)
T 3e5z_A 93 ERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIR- 169 (296)
T ss_dssp EEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEEC-
T ss_pred EEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeec-
Confidence 99999777654322111 124678999999998887 33 12456666554 443 33332
Q ss_pred CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC-CCcE---EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEE
Q 019482 196 SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNK---IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVV 271 (340)
Q Consensus 196 ~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 271 (340)
....+..++|+|+++. +++...++.|.+||+. +++. ...+......+..++++++|++.++. ++.|.+|
T Consensus 170 ~~~~~~gi~~s~dg~~-----lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~ 242 (296)
T 3e5z_A 170 DRVKPNGLAFLPSGNL-----LVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVL 242 (296)
T ss_dssp CCSSEEEEEECTTSCE-----EEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred CCCCCccEEECCCCCE-----EEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence 3345789999999996 5666778899999987 4443 22222234456789999999876665 7889999
Q ss_pred eccCceEeecccccccccceeeEEE-ecCCeEEEEEecCCcEEEEEecCCC
Q 019482 272 DVKKMEINHWSKRLHLGTSIALVEF-CPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 272 d~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
|.. ++.+..+. .+ .. +.+++| +|+++.|+.++.+ .+|.++...
T Consensus 243 ~~~-g~~~~~~~-~~-~~-~~~~~f~~~d~~~L~v~t~~---~l~~~~~~~ 286 (296)
T 3e5z_A 243 TPD-GDELGRVL-TP-QT-TSNLCFGGPEGRTLYMTVST---EFWSIETNV 286 (296)
T ss_dssp CTT-SCEEEEEE-CS-SC-CCEEEEESTTSCEEEEEETT---EEEEEECSC
T ss_pred CCC-CCEEEEEE-CC-CC-ceeEEEECCCCCEEEEEcCC---eEEEEEccc
Confidence 986 55555443 23 23 899999 5899888888876 466665443
No 177
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.83 E-value=1.4e-17 Score=138.29 Aligned_cols=209 Identities=9% Similarity=0.059 Sum_probs=152.3
Q ss_pred cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCce-eeeeeccc--cCCCCCCCCCeEEEEEec-CCCeEEEcc-CCCc
Q 019482 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA-TDINLLAK--KMPPLQDAGPQKCLSFSV-DGSRFAAGG-VDGH 135 (340)
Q Consensus 61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~-~dg~ 135 (340)
++...+..++++|+|+.+++...++.|++|+..... ....+... ......+...+..++++| +++++++.+ .++.
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 455679999999999988888888999999986542 22222110 000012345689999999 788777775 6899
Q ss_pred EEEEeCCCCceeecccc----------CccceeEEEecCC-CCeEEEeeCCCeEEEEEccCCeeEEEeec-CCCCceeeE
Q 019482 136 LRIMHWPSLRIILDEPK----------AHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELC 203 (340)
Q Consensus 136 i~~~d~~~~~~~~~~~~----------~~~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~~v~~~ 203 (340)
|++|+ .+++.+..+.. .......++++|+ ++++++...++.|++||.++++.+..+.. .....+..+
T Consensus 168 I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~ 246 (329)
T 3fvz_A 168 IVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAI 246 (329)
T ss_dssp EEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEE
T ss_pred EEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCccee
Confidence 99999 55665544421 1124789999998 77777777889999999988888887753 233467889
Q ss_pred EEcc------CCCcceEEEEEecCCcceEEEEECCCCcEEeeee---ccCCCeeEEEECCCCCEEEEeeCCCcEEEEecc
Q 019482 204 RFSK------DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR---LLRKPASVLSISLDGKYLAMGSKDGDICVVDVK 274 (340)
Q Consensus 204 ~~~~------~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 274 (340)
+|+| ++.. .++...+..|++||..+++.+..+. .+......++++|+|.++++...++.|++|++.
T Consensus 247 ~~~pg~~~~~~g~~-----~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 247 SYIPGFLFAVNGKP-----YFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EEETTEEEEEECCC-----CTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred eecCCEEEEeCCCE-----EeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 9999 3332 2333445689999999999887763 445668899999999888888889999999986
Q ss_pred C
Q 019482 275 K 275 (340)
Q Consensus 275 ~ 275 (340)
.
T Consensus 322 ~ 322 (329)
T 3fvz_A 322 E 322 (329)
T ss_dssp E
T ss_pred c
Confidence 4
No 178
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.82 E-value=1.3e-17 Score=134.49 Aligned_cols=241 Identities=7% Similarity=-0.020 Sum_probs=168.6
Q ss_pred CeeEEEEcCCCCeEE-EEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC
Q 019482 65 DPMTIAVNPSGDDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS 143 (340)
Q Consensus 65 ~v~~~~~~~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 143 (340)
.+.+++++++|+.++ +...++.|.+|+..+....... ......+.+++++++++++++.. ++.|.+||...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~-------~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~ 96 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP-------FNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGS 96 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECC-------CCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEe-------eCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCC
Confidence 688999999998666 4467788999987654322111 11234678899999998666655 88999999876
Q ss_pred CceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCc
Q 019482 144 LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK 223 (340)
Q Consensus 144 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d 223 (340)
.............+..++++|+++++++...++.|.+|+..+........ .....+..++++++++. .++...+
T Consensus 97 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~l-----~v~~~~~ 170 (270)
T 1rwi_B 97 NNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-TGLNDPDGVAVDNSGNV-----YVTDTDN 170 (270)
T ss_dssp SCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC-CSCCSCCCEEECTTCCE-----EEEEGGG
T ss_pred ceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecc-ccCCCceeEEEeCCCCE-----EEEECCC
Confidence 54332222223568899999999877777778899999765544332221 22235789999999973 4555567
Q ss_pred ceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEE
Q 019482 224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVV 303 (340)
Q Consensus 224 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 303 (340)
+.|.+||................+..++++++|.++++...++.|.+||..+....... ..+ ...+.+++++++|+++
T Consensus 171 ~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~-~~~-~~~p~~i~~~~~g~l~ 248 (270)
T 1rwi_B 171 NRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP-FTG-LNTPLAVAVDSDRTVY 248 (270)
T ss_dssp TEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECC-CCS-CSCEEEEEECTTCCEE
T ss_pred CEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeec-cCC-CCCceeEEECCCCCEE
Confidence 89999999876654332233356889999999977777777889999998765443322 122 2468999999999988
Q ss_pred EEEecCCcEEEEEecCCC
Q 019482 304 LTASKEWGAMITKLTVPA 321 (340)
Q Consensus 304 ~~~~~dg~i~iw~~~~~~ 321 (340)
++...++.|+++++..+.
T Consensus 249 v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 249 VADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEGGGTEEEEECCCGGG
T ss_pred EEECCCCEEEEEcCCCcc
Confidence 999999999999986544
No 179
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.82 E-value=2.6e-17 Score=138.26 Aligned_cols=265 Identities=11% Similarity=0.023 Sum_probs=174.7
Q ss_pred EeeeeecCCCccEEEEcCCC----CcccCCCceEEEEeCCCCCCcccCCeeeEEEec------CCCCeeEEEEcCCCCeE
Q 019482 9 CGSWIKRPENVNLVVLGKSS----RASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE------SEGDPMTIAVNPSGDDF 78 (340)
Q Consensus 9 ~~~w~~~~~~~~~~~~g~~~----~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~l 78 (340)
.++|+|+. +.+..+... ..+..++.|.+|+.. +......+.. +...+..++++|+|++|
T Consensus 54 ~i~~spdg---~~lyv~~~~~~~~~~g~~~~~v~v~d~~--------t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l 122 (361)
T 2oiz_A 54 HVQVSNDG---KKIYTMTTYHERITRGKRSDVVEVWDAD--------KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFI 122 (361)
T ss_dssp EEEECTTS---SEEEEEEEEETTSSSSCEEEEEEEEETT--------TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEE
T ss_pred ceEECCCC---CEEEEEEecccccccCCCCCEEEEEECc--------CCcEEEEEEcCccccccCCCcceEEECCCCCEE
Confidence 78899854 334333210 001135668888754 2222222322 23467889999999999
Q ss_pred EEEec--CCCEEEEEecCceeeee-eccccCCCCCCCCCeEEEEEecCC-CeEEEccCCCcEEEEeCCC-Cceee-----
Q 019482 79 VCSTT--NGGCKLFEVYGGATDIN-LLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPS-LRIIL----- 148 (340)
Q Consensus 79 ~~~~~--d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~-~~~~~----- 148 (340)
+++.. ++.|.+||+.+.+.... +.. .....+.+.|++ ..+++.+.||.+.+|++.. ++...
T Consensus 123 ~v~n~~~~~~v~v~d~~~~~~~~~~i~~---------~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~ 193 (361)
T 2oiz_A 123 VLQNASPATSIGIVDVAKGDYVEDVTAA---------AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSK 193 (361)
T ss_dssp EEEEESSSEEEEEEETTTTEEEEEEGGG---------TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECC
T ss_pred EEECCCCCCeEEEEECCCCcEEEEEecC---------CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeecccc
Confidence 98874 57899999998876554 321 122335667765 5677788899999998865 44331
Q ss_pred -ccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee--EEEeecCC---------CCceeeEEEccCCCcceEEE
Q 019482 149 -DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA--WTFLTRNS---------DEKIELCRFSKDGTKPFLFC 216 (340)
Q Consensus 149 -~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~ 216 (340)
.+.....+ ..+.++|++..++..+.++.+.++|+..... ...+.... ......++|+|+++.+|.
T Consensus 194 ~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv-- 270 (361)
T 2oiz_A 194 QMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYV-- 270 (361)
T ss_dssp CCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEE--
T ss_pred ceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEE--
Confidence 11111122 2345577887777778899999999875432 12211000 011223789999887432
Q ss_pred EEe-cC-------CcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCc--eEeecccccc
Q 019482 217 TVQ-RG-------DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM--EINHWSKRLH 286 (340)
Q Consensus 217 ~~~-~~-------~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~ 286 (340)
... .+ ....|.+||+.+++.+..+..+. ...++|+|||++|++++. +.|.+||..++ +.+..+. ..
T Consensus 271 ~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~-~~ 346 (361)
T 2oiz_A 271 FMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIE-GA 346 (361)
T ss_dssp EEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEET-TS
T ss_pred EEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEec-cC
Confidence 111 11 14589999999999998888776 899999999999999887 99999999999 8887652 22
Q ss_pred cccceeeEEEecCCe
Q 019482 287 LGTSIALVEFCPTQR 301 (340)
Q Consensus 287 ~~~~i~~~~~~~~~~ 301 (340)
+.....++++|+|+
T Consensus 347 -G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 347 -AEASLQVQFHPVGG 360 (361)
T ss_dssp -CSSEEEEEECCCSC
T ss_pred -CCCcEEEEecCCCC
Confidence 45678999999985
No 180
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.81 E-value=1.4e-16 Score=132.13 Aligned_cols=236 Identities=10% Similarity=-0.053 Sum_probs=167.9
Q ss_pred CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC
Q 019482 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS 143 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 143 (340)
..+..+.+. +++.+++...++.|.+||..+++....+. ....+..++++++++.+++...++.|.+||..+
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~--------~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t 114 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT--------GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT 114 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE--------CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTT
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC--------CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence 346778774 34455555667899999999888766552 235678999999985444444789999999998
Q ss_pred CceeeccccCc-----cceeEEEecCCCCeEEEee-CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEE
Q 019482 144 LRIILDEPKAH-----KSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT 217 (340)
Q Consensus 144 ~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 217 (340)
++....+.... .....+++ .+++.+++.. .++.|.++|+++++.+..+... .....+.++|+|+. .
T Consensus 115 ~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g--~~p~~i~~~~dG~l-----~ 186 (328)
T 3dsm_A 115 YEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG--IQPTSLVMDKYNKM-----W 186 (328)
T ss_dssp TEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS--SCBCCCEECTTSEE-----E
T ss_pred CeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC--CCccceEEcCCCCE-----E
Confidence 88665544322 14556777 3444444433 4889999999999988877643 34678999999984 3
Q ss_pred EecCCc----------ceEEEEECCCCcEEeeeecc-CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccc
Q 019482 218 VQRGDK----------ALLAVYDISTWNKIGHKRLL-RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH 286 (340)
Q Consensus 218 ~~~~~d----------~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 286 (340)
+++..+ +.|.++|..+++....+... ......++++|++++|+++.. .|.+||..+++.........
T Consensus 187 v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~ 264 (328)
T 3dsm_A 187 TITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEF 264 (328)
T ss_dssp EEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCC
T ss_pred EEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecC
Confidence 444433 78999999998877665543 236789999999999988765 89999998887642211111
Q ss_pred cccceeeEEEec-CCeEEEEE----ecCCcEEEEEec
Q 019482 287 LGTSIALVEFCP-TQRVVLTA----SKEWGAMITKLT 318 (340)
Q Consensus 287 ~~~~i~~~~~~~-~~~~l~~~----~~dg~i~iw~~~ 318 (340)
.......++++| +++++++. ..++.|.+|+.+
T Consensus 265 ~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 265 RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 135688999999 56666666 578899999876
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.81 E-value=6.2e-18 Score=154.86 Aligned_cols=244 Identities=12% Similarity=0.039 Sum_probs=166.7
Q ss_pred CCCCeeEEEEcCCCCeEEEEecCC-----CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCc-
Q 019482 62 SEGDPMTIAVNPSGDDFVCSTTNG-----GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH- 135 (340)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~- 135 (340)
|...+..++|||||++||.+..++ .|++||+.+++........ ..+..++|+|||+.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~--------~~~~~~~wspDg~~l~~~~~~~~~ 194 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--------VKFSCMAWTHDGKGMFYNAYPQQD 194 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--------ECSCCEEECTTSSEEEEEECCCCS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC--------cccceEEEEeCCCEEEEEEECCcc
Confidence 444688999999999998766543 8999999988765432211 22567999999999998887765
Q ss_pred ---------------EEEEeCCCCce----eeccccCccceeEEEecCCCCeEEEeeC-----CCeEEEEEccC------
Q 019482 136 ---------------LRIMHWPSLRI----ILDEPKAHKSVLDMDFSLDSEFLATTST-----DGSARIWKTED------ 185 (340)
Q Consensus 136 ---------------i~~~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~v~iwd~~~------ 185 (340)
|++|++.+++. +.....+...+..+.|+|||++|+.++. +..|++||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 274 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT 274 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccC
Confidence 99999987652 2122223345788999999999887764 56899999986
Q ss_pred Ce-eEEEeecCCCCceeeEEEccCCCcceEEEEEec--CCcceEEEEECCCCcE--EeeeeccCC--CeeEEEECCCCCE
Q 019482 186 GV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR--GDKALLAVYDISTWNK--IGHKRLLRK--PASVLSISLDGKY 258 (340)
Q Consensus 186 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~d~~i~i~d~~~~~~--~~~~~~~~~--~i~~~~~s~~~~~ 258 (340)
+. ....+..+.. .+.. .|+|+|+.+++ .+. .....|.+||+.++.. ...+..+.. .+..+.|++++.+
T Consensus 275 ~~~~~~~l~~~~~-~~~~-~~s~dg~~l~~---~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 349 (710)
T 2xdw_A 275 GILKWVKLIDNFE-GEYD-YVTNEGTVFTF---KTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFL 349 (710)
T ss_dssp SSCCCEEEECSSS-SCEE-EEEEETTEEEE---EECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEE
T ss_pred CccceEEeeCCCC-cEEE-EEeccCCEEEE---EECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEE
Confidence 43 3455554333 3333 58899987432 221 2245799999987642 233444433 5778899988888
Q ss_pred EEEeeCCCc--EEEEeccCceEeecccccccccceeeEEEecCCeEEEEE-ec---CCcEEEEEecCC
Q 019482 259 LAMGSKDGD--ICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA-SK---EWGAMITKLTVP 320 (340)
Q Consensus 259 l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~---dg~i~iw~~~~~ 320 (340)
+++...|+. |.+||+.+++....+. .+ ...+..++++|++..++.. +. .+.+++|++...
T Consensus 350 v~~~~~~g~~~l~~~~~~~g~~~~~l~-~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 350 VLCYLHDVKNTLQLHDLATGALLKIFP-LE-VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEC-CC-SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred EEEEEECCEEEEEEEECCCCCEEEecC-CC-CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 888888884 5667776676555443 23 4578899999998655533 22 367888887543
No 182
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.81 E-value=2.6e-15 Score=122.74 Aligned_cols=278 Identities=6% Similarity=-0.030 Sum_probs=182.5
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 84 (340)
..+.++++.++ +.+.+... .++.+..|+.+ ... ....+..+...+.+++++++|..+++...+
T Consensus 15 ~~~~~i~~d~~---g~l~v~~~------~~~~v~~~d~~---~~~-----~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~ 77 (299)
T 2z2n_A 15 TGPYGITVSDK---GKVWITQH------KANMISCINLD---GKI-----TEYPLPTPDAKVMCLTISSDGEVWFTENAA 77 (299)
T ss_dssp CCEEEEEECTT---SCEEEEET------TTTEEEEECTT---CCE-----EEEECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred CCccceEECCC---CCEEEEec------CCCcEEEEcCC---CCe-----EEecCCcccCceeeEEECCCCCEEEeCCCC
Confidence 45778888873 34555322 23445555433 111 112222345679999999999877777667
Q ss_pred CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeec-cccCccceeEEEec
Q 019482 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMDFS 163 (340)
Q Consensus 85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~i~~~~~~ 163 (340)
+.|..|+... +. ..+... .....+.++++.++++++++...++.|..||. +++.... .......+..+++.
T Consensus 78 ~~i~~~~~~g-~~-~~~~~~-----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~ 149 (299)
T 2z2n_A 78 NKIGRITKKG-II-KEYTLP-----NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLG 149 (299)
T ss_dssp TEEEEECTTS-CE-EEEECS-----STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred CeEEEECCCC-cE-EEEeCC-----CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEc
Confidence 8899998762 22 111110 13357899999999988887777889999998 5543322 22233468899999
Q ss_pred CCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee-eec
Q 019482 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRL 242 (340)
Q Consensus 164 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-~~~ 242 (340)
++++.+++...++.|..||. +++............+..+++++++.. .++...++.|.+||. +++.... ...
T Consensus 150 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l-----~v~~~~~~~i~~~~~-~g~~~~~~~~~ 222 (299)
T 2z2n_A 150 SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDAL-----WFVEIIGNKIGRITT-SGEITEFKIPT 222 (299)
T ss_dssp TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSE-----EEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCE-----EEEccCCceEEEECC-CCcEEEEECCC
Confidence 99988777777789999998 665543222223345889999999874 345556788999999 6654322 222
Q ss_pred cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 243 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
....+..++++++|++.++...++.|..||. +++........+ ...+.++++ ++++++++.+ .+.+..++.+
T Consensus 223 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~-~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~ 294 (299)
T 2z2n_A 223 PNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIK-SAEPHGICF-DGETIWFAME-CDKIGKLTLI 294 (299)
T ss_dssp TTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSS-SCCEEEEEE-CSSCEEEEET-TTEEEEEEEC
T ss_pred CCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCC-CCccceEEe-cCCCEEEEec-CCcEEEEEcC
Confidence 3456889999999987766657789999998 444332211222 357899999 9988777765 4566666654
No 183
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.80 E-value=1.7e-16 Score=129.07 Aligned_cols=237 Identities=12% Similarity=0.079 Sum_probs=161.0
Q ss_pred eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEE------ecCCCCeeEEEE-cCCCCeE
Q 019482 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF------DESEGDPMTIAV-NPSGDDF 78 (340)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~~~~-~~~~~~l 78 (340)
.+.++++.++ ..+++... .++.|.+|+.+ .... ..+ .+|...+..+++ .+++..+
T Consensus 31 ~p~~v~~~~~---g~l~v~~~------~~~~i~~~d~~--g~~~-------~~~~~~~~~~~~~~~p~~i~~~~~~g~l~ 92 (286)
T 1q7f_A 31 EPSGVAVNAQ---NDIIVADT------NNHRIQIFDKE--GRFK-------FQFGECGKRDSQLLYPNRVAVVRNSGDII 92 (286)
T ss_dssp CEEEEEECTT---CCEEEEEG------GGTEEEEECTT--SCEE-------EEECCBSSSTTCBSSEEEEEEETTTTEEE
T ss_pred CCceEEECCC---CCEEEEEC------CCCEEEEECCC--CcEE-------EEecccCCCcccccCceEEEEEcCCCeEE
Confidence 4677888873 34555333 34457777543 2111 111 134467899999 4677666
Q ss_pred EEEec-CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccc--cCcc
Q 019482 79 VCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP--KAHK 155 (340)
Q Consensus 79 ~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~ 155 (340)
++... ++.|++||. +++....+.. .+...+.+++++|+++++++...++.|.+||.. ++....+. .+..
T Consensus 93 v~~~~~~~~i~~~d~-~g~~~~~~~~------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~ 164 (286)
T 1q7f_A 93 VTERSPTHQIQIYNQ-YGQFVRKFGA------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLE 164 (286)
T ss_dssp EEECGGGCEEEEECT-TSCEEEEECT------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCS
T ss_pred EEcCCCCCEEEEECC-CCcEEEEecC------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccC
Confidence 66543 788999994 4444333321 133567999999999988887778999999954 45444332 2334
Q ss_pred ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecC-CCCceeeEEEccCCCcceEEEEEecCCcc-eEEEEECCC
Q 019482 156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKA-LLAVYDIST 233 (340)
Q Consensus 156 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~d~-~i~i~d~~~ 233 (340)
.+..++++|+++++++...++.|++||. +++.+..+... ....+..++++++|.. +++...++ .|.+||. +
T Consensus 165 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l-----~v~~~~~~~~i~~~~~-~ 237 (286)
T 1q7f_A 165 FPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEI-----LIADNHNNFNLTIFTQ-D 237 (286)
T ss_dssp SEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCE-----EEEECSSSCEEEEECT-T
T ss_pred CcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCE-----EEEeCCCCEEEEEECC-C
Confidence 6889999999998888778899999997 45555555432 1246889999999974 45555565 9999995 4
Q ss_pred CcEEeeeeccCC--CeeEEEECCCCCEEEEeeCCCcEEEEeccCc
Q 019482 234 WNKIGHKRLLRK--PASVLSISLDGKYLAMGSKDGDICVVDVKKM 276 (340)
Q Consensus 234 ~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 276 (340)
++.+..+..+.. .+..++++|+|+++++ +.|+.|++|++...
T Consensus 238 g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 238 GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 566656654432 3678999999987666 67999999997654
No 184
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.80 E-value=2e-16 Score=127.56 Aligned_cols=217 Identities=7% Similarity=-0.062 Sum_probs=168.4
Q ss_pred CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccC
Q 019482 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153 (340)
Q Consensus 74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 153 (340)
.++.|++++.++.|++||.++++...++.... ...+.++.++|+|+++++ .++.|..||. +++.+..+..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~------~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~ 74 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK------GWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAP 74 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCT------TCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc------cCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCC
Confidence 45789999999999999998998877765321 135788999999998883 4678999998 78888877654
Q ss_pred c-cceeEEEecCCCCeEEEeeC-CCeEEEEEccCCeeEEEeecCC-----CCceeeEEEccCCCcceEEEEEecCCcceE
Q 019482 154 H-KSVLDMDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLTRNS-----DEKIELCRFSKDGTKPFLFCTVQRGDKALL 226 (340)
Q Consensus 154 ~-~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i 226 (340)
. ..+.++.+.|+|+++++.+. ++.+..+|. +++.+..+.... ......+++.++|.. +++...++.|
T Consensus 75 ~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~-----lv~~~~~~~v 148 (276)
T 3no2_A 75 AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNY-----LVPLFATSEV 148 (276)
T ss_dssp TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCE-----EEEETTTTEE
T ss_pred CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCE-----EEEecCCCEE
Confidence 3 47888999999999999887 778888885 677776664211 123556788999986 6777889999
Q ss_pred EEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccc----cccceeeEEEecCCeE
Q 019482 227 AVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH----LGTSIALVEFCPTQRV 302 (340)
Q Consensus 227 ~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~ 302 (340)
..||.. ++.+..+.... ...++...++|+.++++..++.|..+|..+++.+..+.... .-..+.+++..++|++
T Consensus 149 ~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i 226 (276)
T 3no2_A 149 REIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGL 226 (276)
T ss_dssp EEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCE
T ss_pred EEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCE
Confidence 999998 98887776643 45667888999999999888899999999998876653211 0123788889999998
Q ss_pred EEEEe
Q 019482 303 VLTAS 307 (340)
Q Consensus 303 l~~~~ 307 (340)
+++..
T Consensus 227 ~v~~~ 231 (276)
T 3no2_A 227 YICNW 231 (276)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 88874
No 185
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.80 E-value=6.5e-16 Score=136.31 Aligned_cols=268 Identities=11% Similarity=0.101 Sum_probs=181.5
Q ss_pred CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEec--CceeeeeeccccCCCCC
Q 019482 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVY--GGATDINLLAKKMPPLQ 110 (340)
Q Consensus 33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~--~~~~~~~~~~~~~~~~~ 110 (340)
.++.+.+++.+ +......+.. ...+..+.|+|||+++++++.++.|.+||+. +.+....+.
T Consensus 175 ~~~~V~viD~~--------t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~-------- 237 (567)
T 1qks_A 175 DAGQIALIDGS--------TYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK-------- 237 (567)
T ss_dssp TTTEEEEEETT--------TCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE--------
T ss_pred CCCeEEEEECC--------CCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe--------
Confidence 45668888765 3333333443 2357799999999999999999999999995 555544432
Q ss_pred CCCCeEEEEEe----cCCCeEEEccC-CCcEEEEeCCCCceeeccccC--------------------------------
Q 019482 111 DAGPQKCLSFS----VDGSRFAAGGV-DGHLRIMHWPSLRIILDEPKA-------------------------------- 153 (340)
Q Consensus 111 ~~~~v~~~~~~----~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~-------------------------------- 153 (340)
.......++|+ |||++++++.. +++|.++|..+.+.+..+.-.
T Consensus 238 ~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~ 317 (567)
T 1qks_A 238 IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 317 (567)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec
Confidence 22346789999 69998887765 589999998877655432210
Q ss_pred -----------------------ccceeEEEecCCCCeEEEee-CCCeEEEEEccCCeeEEEeec-CC-CCceeeEE-Ec
Q 019482 154 -----------------------HKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLTR-NS-DEKIELCR-FS 206 (340)
Q Consensus 154 -----------------------~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~-~~-~~~v~~~~-~~ 206 (340)
.....++.|+|++++++++. .++.|.++|+.+++.+..+.. .. ..+-..+. ++
T Consensus 318 ~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~ 397 (567)
T 1qks_A 318 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVH 397 (567)
T ss_dssp TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEE
T ss_pred CCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeEC
Confidence 00123567999999876655 578999999999988777654 11 11112333 57
Q ss_pred cCCCcceEEEEEecCCcceEEEEECCC-------CcEEeeeeccCCCeeEEEECCCCCEEEEeeC-------CCcEEEEe
Q 019482 207 KDGTKPFLFCTVQRGDKALLAVYDIST-------WNKIGHKRLLRKPASVLSISLDGKYLAMGSK-------DGDICVVD 272 (340)
Q Consensus 207 ~~~~~~~~~~~~~~~~d~~i~i~d~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-------dg~i~i~d 272 (340)
|++...+ ......++.|.++|..+ ++.+..+......-..+..+|+++++.+... .++|.++|
T Consensus 398 p~~g~v~---~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 398 PTFGPVW---ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp TTTEEEE---EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred CCCCcEE---EeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence 8755421 12233568999999988 6777777765444455788999999998763 35899999
Q ss_pred ccCc-----eEe-ecccc------cccccceeeEEEecCCeEEEEEe-----cCCcEEEEEecCC
Q 019482 273 VKKM-----EIN-HWSKR------LHLGTSIALVEFCPTQRVVLTAS-----KEWGAMITKLTVP 320 (340)
Q Consensus 273 ~~~~-----~~~-~~~~~------~~~~~~i~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~ 320 (340)
+.+. ... ..+.. ...+..+..+.|+|+|+.+..+. .++.|.|+|.+..
T Consensus 475 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 475 IKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp GGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence 9877 211 11110 11135789999999998776653 3689999887543
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.80 E-value=2.9e-16 Score=128.44 Aligned_cols=238 Identities=11% Similarity=0.043 Sum_probs=161.7
Q ss_pred eEEeeeeecCCCcc-EEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCC
Q 019482 7 VTCGSWIKRPENVN-LVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG 85 (340)
Q Consensus 7 v~~~~w~~~~~~~~-~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~ 85 (340)
..+++|+|+ ++ +++++. .++.|..|+.+ + . ...+..+...+.+++++|+|+++++...++
T Consensus 30 ~eg~~~d~~---g~~l~~~~~------~~~~i~~~~~~--~------~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~ 90 (296)
T 3e5z_A 30 TEGPVYVPA---RSAVIFSDV------RQNRTWAWSDD--G------Q--LSPEMHPSHHQNGHCLNKQGHLIACSHGLR 90 (296)
T ss_dssp EEEEEEEGG---GTEEEEEEG------GGTEEEEEETT--S------C--EEEEESSCSSEEEEEECTTCCEEEEETTTT
T ss_pred ccCCeEeCC---CCEEEEEeC------CCCEEEEEECC--C------C--eEEEECCCCCcceeeECCCCcEEEEecCCC
Confidence 457899984 44 555444 34446666654 2 2 233455677899999999999887777678
Q ss_pred CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEE----cc-------------CCCcEEEEeCCCCceee
Q 019482 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA----GG-------------VDGHLRIMHWPSLRIIL 148 (340)
Q Consensus 86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~-------------~dg~i~~~d~~~~~~~~ 148 (340)
.|.+||..+++......... ......+..++++|+|+++++ ++ ..+.|..++.. ++ ..
T Consensus 91 ~i~~~d~~~g~~~~~~~~~~---~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~ 165 (296)
T 3e5z_A 91 RLERQREPGGEWESIADSFE---GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LS 165 (296)
T ss_dssp EEEEECSTTCCEEEEECEET---TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EE
T ss_pred eEEEEcCCCCcEEEEeeccC---CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EE
Confidence 89999997766432221110 011245678999999998886 43 13456666654 33 33
Q ss_pred ccccCccceeEEEecCCCCeEEEeeCCCeEEEEEcc-CCee---EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc
Q 019482 149 DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-DGVA---WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA 224 (340)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~-~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~ 224 (340)
....+......++|+|+++.+++.+.++.|++|++. +++. ...+ ......+..++++++|.. ..+. ++
T Consensus 166 ~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l------~v~~-~~ 237 (296)
T 3e5z_A 166 APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLI------WASA-GD 237 (296)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCE------EEEE-TT
T ss_pred EeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCE------EEEc-CC
Confidence 334444567899999999988777778999999997 4544 2333 334456788999999983 3333 78
Q ss_pred eEEEEECCCCcEEeeeeccCCCeeEEEE-CCCCCEEEEeeCCCcEEEEeccCceEe
Q 019482 225 LLAVYDISTWNKIGHKRLLRKPASVLSI-SLDGKYLAMGSKDGDICVVDVKKMEIN 279 (340)
Q Consensus 225 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~~~~dg~i~i~d~~~~~~~ 279 (340)
.|.+||.. ++.+..+..+.. +.+++| +|+++.|++++.++ +.-++.++.+..
T Consensus 238 ~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~~ 290 (296)
T 3e5z_A 238 GVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGLE 290 (296)
T ss_dssp EEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBCC
T ss_pred eEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccccc
Confidence 89999987 777777776666 899999 68999999888764 656666665543
No 187
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.80 E-value=2.1e-17 Score=138.32 Aligned_cols=217 Identities=11% Similarity=0.030 Sum_probs=149.9
Q ss_pred CCeeEEEEcCCCCeEEEEe---------cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC-
Q 019482 64 GDPMTIAVNPSGDDFVCST---------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD- 133 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~---------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d- 133 (340)
..+..+++ ||++++... .++.|.+||+.+++.. .+ ..+..++|+|||++|+.++.+
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l-----------~~~~~~~~SpDg~~la~~~~~~ 80 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI-----------ENATMPRISPDGKKIAFMRANE 80 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE-----------ESCEEEEECTTSSEEEEEEEET
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec-----------ccCCCeEECCCCCEEEEEEecc
Confidence 34667777 888887642 2457889998876532 22 356889999999999887654
Q ss_pred --C--cEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCC---------------------------CeEEEEE
Q 019482 134 --G--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD---------------------------GSARIWK 182 (340)
Q Consensus 134 --g--~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------------------------~~v~iwd 182 (340)
+ .|.+|++.+++..... .... +..+.|+|||+.|+.++.+ ..|++||
T Consensus 81 ~~~~~~l~~~~~~~g~~~~l~-~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d 158 (347)
T 2gop_A 81 EKKVSEIWVADLETLSSKKIL-EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFD 158 (347)
T ss_dssp TTTEEEEEEEETTTTEEEEEE-EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEE
T ss_pred CCCcceEEEEECCCCceEEEE-cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEE
Confidence 2 4888888877654433 3334 8999999999998887642 5799999
Q ss_pred ccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCC---------cceEEEEECCCCcEEeeeeccCCCeeEEEEC
Q 019482 183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD---------KALLAVYDISTWNKIGHKRLLRKPASVLSIS 253 (340)
Q Consensus 183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s 253 (340)
+.+++.+..+.. . .+..+.|+|+| . ++++.. ...|.++| +++. ..+..+ ..+..+ +
T Consensus 159 ~~~~~~~~~l~~--~-~~~~~~~spdg-~-----~~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~-~~~~~~--s 223 (347)
T 2gop_A 159 TESEEVIEEFEK--P-RFSSGIWHRDK-I-----VVNVPHREIIPQYFKFWDIYIWE--DGKE-EKMFEK-VSFYAV--D 223 (347)
T ss_dssp TTTTEEEEEEEE--E-TTCEEEEETTE-E-----EEEEECCCSSCCSSCCEEEEEEE--TTEE-EEEEEE-ESEEEE--E
T ss_pred CCCCeEEeeecC--C-CcccccCCCCe-E-----EEEEecccccccccccccEEEeC--CCce-EEeccC-cceeeE--C
Confidence 988877455554 2 68899999999 3 222221 23455666 4443 333333 444444 9
Q ss_pred CCCCEEEEeeCC--------CcEEEEeccCceEeecccccccccceee-EEEecCCeEEEEEecCCcEEEEEec
Q 019482 254 LDGKYLAMGSKD--------GDICVVDVKKMEINHWSKRLHLGTSIAL-VEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 254 ~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
|||++|+.++.+ ..|.+|| +++..... ..+ ...+.. +.|+ |+ ++++++.++.++|| ++
T Consensus 224 pdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~-~~~-~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 224 SDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL-DEV-DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp ECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS-TTC-CSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred CCCCEEEEEEccccCCccccceEEEEC--CCceEecc-ccC-CcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence 999998887644 3688888 55544333 233 456776 8999 88 89999999999999 87
No 188
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.79 E-value=1.8e-15 Score=123.73 Aligned_cols=242 Identities=9% Similarity=0.034 Sum_probs=171.0
Q ss_pred EecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEE
Q 019482 59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI 138 (340)
Q Consensus 59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 138 (340)
+..+...+.+++++++|+.+++...++.|.+||.. +... .+... .....+.++++++++.++++...++.|..
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~-----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 82 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLP-----TPDAKVMCLTISSDGEVWFTENAANKIGR 82 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECS-----STTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCC-----cccCceeeEEECCCCCEEEeCCCCCeEEE
Confidence 33455679999999999877766667889999987 4332 21111 12367899999999988887777888999
Q ss_pred EeCCCCcee-eccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEE
Q 019482 139 MHWPSLRII-LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT 217 (340)
Q Consensus 139 ~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 217 (340)
||.. ++.. .........+..+++.++++++++...++.|..||. +++............+..+++++++.. .
T Consensus 83 ~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l-----~ 155 (299)
T 2z2n_A 83 ITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNAL-----W 155 (299)
T ss_dssp ECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCE-----E
T ss_pred ECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCE-----E
Confidence 9976 3322 222223346889999999988887777889999998 555443322223346889999999874 3
Q ss_pred EecCCcceEEEEECCCCcEEee-eeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEE
Q 019482 218 VQRGDKALLAVYDISTWNKIGH-KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF 296 (340)
Q Consensus 218 ~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~ 296 (340)
++...++.|..||. +++.... .......+..++++++|++.++...++.|.+||. +++........+ ...+.++++
T Consensus 156 v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~ 232 (299)
T 2z2n_A 156 FTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTP-NARPHAITA 232 (299)
T ss_dssp EEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEE
T ss_pred EEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCC-CCCceeEEE
Confidence 44556788999999 6655432 2223456789999999997777667889999999 665443211222 357889999
Q ss_pred ecCCeEEEEEecCCcEEEEEe
Q 019482 297 CPTQRVVLTASKEWGAMITKL 317 (340)
Q Consensus 297 ~~~~~~l~~~~~dg~i~iw~~ 317 (340)
+++|+++++...++.|..|+.
T Consensus 233 ~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 233 GAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp CSTTCEEEEETTTTEEEEEET
T ss_pred CCCCCEEEeccCCceEEEECC
Confidence 999997777767788888886
No 189
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.79 E-value=8e-18 Score=153.75 Aligned_cols=243 Identities=11% Similarity=0.013 Sum_probs=161.3
Q ss_pred cCCCCeeEEEEcCCCCeEEE-----EecCCCEEEEEecCceee-eeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC
Q 019482 61 ESEGDPMTIAVNPSGDDFVC-----STTNGGCKLFEVYGGATD-INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (340)
Q Consensus 61 ~h~~~v~~~~~~~~~~~l~~-----~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 134 (340)
+|...+..++|||||++||. |+.+..|++||+.+++.. .... .. .....++|+|||+.|+.++.|.
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-------~~-~~~~~~~wspDg~~l~~~~~d~ 189 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-------EG-GKYATPKWTPDSKGFYYEWLPT 189 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-------SC-CTTCCCEECTTSSEEEEEECCC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-------Cc-ccccceEEecCCCEEEEEEecC
Confidence 45556899999999999984 334468999999988753 1111 11 1125789999999999988876
Q ss_pred c-------------EEEEeCCCCc----eeeccccCccceeEEEecCCCCeEEEeeCCC----eEEEEEccCCeeEEEee
Q 019482 135 H-------------LRIMHWPSLR----IILDEPKAHKSVLDMDFSLDSEFLATTSTDG----SARIWKTEDGVAWTFLT 193 (340)
Q Consensus 135 ~-------------i~~~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~v~iwd~~~~~~~~~~~ 193 (340)
. |++|++.+++ .+.....+...+..+.|+|||++|+.++.++ .|++|+..+++. ..+.
T Consensus 190 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~ 268 (695)
T 2bkl_A 190 DPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLV 268 (695)
T ss_dssp CTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEE
T ss_pred CCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEee
Confidence 5 9999998776 2222323335688999999999988877665 677776655543 3344
Q ss_pred cCCCCceeeEEEccCCCcceEEEEEec--CCcceEEEEECCCCcE--Eeeeecc--CCCeeEEEECCCCCEEEEeeCCCc
Q 019482 194 RNSDEKIELCRFSKDGTKPFLFCTVQR--GDKALLAVYDISTWNK--IGHKRLL--RKPASVLSISLDGKYLAMGSKDGD 267 (340)
Q Consensus 194 ~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~d~~i~i~d~~~~~~--~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~ 267 (340)
.... .+....+ +++. +++ .+. ..++.|.+||+.+++. ...+..+ ...+..++|+ ++.++++...|+.
T Consensus 269 ~~~~-~~~~~~~-~~g~-l~~---~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~ 341 (695)
T 2bkl_A 269 KGVG-AKYEVHA-WKDR-FYV---LTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT 341 (695)
T ss_dssp ECSS-CCEEEEE-ETTE-EEE---EECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE
T ss_pred cCCC-ceEEEEe-cCCc-EEE---EECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence 3333 3455555 6666 322 222 2468999999987653 1223322 3457788888 6778888889998
Q ss_pred EEEEecc-CceEeecccccccccceeeEEEecCCeEEEEE----ecCCcEEEEEecCC
Q 019482 268 ICVVDVK-KMEINHWSKRLHLGTSIALVEFCPTQRVVLTA----SKEWGAMITKLTVP 320 (340)
Q Consensus 268 i~i~d~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~iw~~~~~ 320 (340)
.+||.+. +++....+.. +....+..++++|+++.++.. ...+.+++|++...
T Consensus 342 ~~l~~~~~~g~~~~~l~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 342 SEVRVATLKGKPVRTVQL-PGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp EEEEEEETTCCEEEECCC-SSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEEEEEeCCCCeeEEecC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 8888665 3444443322 213568888999998766632 23477888887543
No 190
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.78 E-value=1.2e-16 Score=133.05 Aligned_cols=238 Identities=8% Similarity=-0.034 Sum_probs=165.3
Q ss_pred CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC
Q 019482 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS 143 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 143 (340)
..|.++.|++++..++....++.++.|. .+....+.. +...+.+++|+|++++++++..++.|.+||..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-------~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~ 75 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPWLEISK-------KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET 75 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEEEES-------SCCCEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred cccceeeecCCccceeEEeecccCcccc---cceeEEEec-------cCccccCcEECCCCCEEEEECCCCEEEEEeCCC
Confidence 4578889999888787777788899992 222222221 335678999999999888888889999999988
Q ss_pred CceeeccccCccceeEEEecCCCCeEEEeeCC----CeEEEEEccCCeeEEEee-cCCCCceeeEEEccCCCcceEEEEE
Q 019482 144 LRIILDEPKAHKSVLDMDFSLDSEFLATTSTD----GSARIWKTEDGVAWTFLT-RNSDEKIELCRFSKDGTKPFLFCTV 218 (340)
Q Consensus 144 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~ 218 (340)
++.......+...+.+++++|+++++++...+ +.|.+||.++++....+. ......+..++++|++.. .+
T Consensus 76 ~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l-----~v 150 (333)
T 2dg1_A 76 KEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGF-----YF 150 (333)
T ss_dssp CCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCE-----EE
T ss_pred CcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCE-----EE
Confidence 77554333445679999999999888877666 689999988776543332 123346889999999974 23
Q ss_pred ecCC------cceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEe-eCCCcEEEEeccC-ceEeec-----cccc
Q 019482 219 QRGD------KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDVKK-MEINHW-----SKRL 285 (340)
Q Consensus 219 ~~~~------d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~-~~~~~~-----~~~~ 285 (340)
+... .+.|..+|..+++... +.........++|+|+|+.|+++ +.++.|.+||+.+ +..... ....
T Consensus 151 ~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~ 229 (333)
T 2dg1_A 151 TDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYF 229 (333)
T ss_dssp EECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEEC
T ss_pred EeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEec
Confidence 3332 3567777776555432 22233457889999999866554 5578999999963 222111 0000
Q ss_pred ccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482 286 HLGTSIALVEFCPTQRVVLTASKEWGAMITKL 317 (340)
Q Consensus 286 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~ 317 (340)
.....+..++++++|+++++...++.|.+|+.
T Consensus 230 ~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 230 TGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp CSSSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred CCCCCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence 10136788999999998888888889999976
No 191
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.76 E-value=4.2e-16 Score=142.76 Aligned_cols=251 Identities=11% Similarity=0.000 Sum_probs=163.7
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 84 (340)
..+..++|+| ++..+|++...+ +.....|.+|+++. ... ....+.. ..+..++|+|||+.|+.++.+
T Consensus 125 ~~~~~~~~SP---Dg~~la~~~~~~-G~~~~~i~v~d~~t--g~~-----~~~~~~~--~~~~~~~wspDg~~l~~~~~~ 191 (710)
T 2xdw_A 125 VALRGYAFSE---DGEYFAYGLSAS-GSDWVTIKFMKVDG--AKE-----LPDVLER--VKFSCMAWTHDGKGMFYNAYP 191 (710)
T ss_dssp EEEEEEEECT---TSSEEEEEEEET-TCSCEEEEEEETTT--TEE-----EEEEEEE--ECSCCEEECTTSSEEEEEECC
T ss_pred EEEEEEEECC---CCCEEEEEEcCC-CCceEEEEEEECCC--CCC-----CcccccC--cccceEEEEeCCCEEEEEEEC
Confidence 3578899999 445566554321 11223677777652 111 1112222 236789999999999998877
Q ss_pred CC----------------EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-----CCcEEEEeCCC
Q 019482 85 GG----------------CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----DGHLRIMHWPS 143 (340)
Q Consensus 85 ~~----------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~ 143 (340)
+. |++|++.++.....+.... ..+...+..+.|+|||++|+..+. +..|++||+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~---~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF---PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC---TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred CccccccccccccCCCCEEEEEECCCCcccceEEecc---CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence 65 9999997765321221111 113455789999999999887764 56899999976
Q ss_pred ------Cc-eeeccccCccceeEEEecCCCCeEEEeeCC----CeEEEEEccCCe--eEEEeecCCC-CceeeEEEccCC
Q 019482 144 ------LR-IILDEPKAHKSVLDMDFSLDSEFLATTSTD----GSARIWKTEDGV--AWTFLTRNSD-EKIELCRFSKDG 209 (340)
Q Consensus 144 ------~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~v~iwd~~~~~--~~~~~~~~~~-~~v~~~~~~~~~ 209 (340)
+. ....+..+...+.. .|+|+|+.|+..+.+ ..|.+||+.+++ ....+..+.. ..+..+.|++++
T Consensus 269 ~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 347 (710)
T 2xdw_A 269 ESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN 347 (710)
T ss_dssp SSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT
T ss_pred cccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC
Confidence 43 24444444444444 588888877766543 369999998764 2344443433 367889998665
Q ss_pred CcceEEEEEecCCcc--eEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEee----CCCcEEEEeccCce
Q 019482 210 TKPFLFCTVQRGDKA--LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS----KDGDICVVDVKKME 277 (340)
Q Consensus 210 ~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----~dg~i~i~d~~~~~ 277 (340)
.. +++...++ .|.+||+.+++.+..+..+...+..+.++|+++.++... ..+.|++||+.+++
T Consensus 348 ~l-----v~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 348 FL-----VLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EE-----EEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EE-----EEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 53 34444454 577888877877677776777788899999997766442 34789999998876
No 192
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.76 E-value=1.2e-14 Score=122.31 Aligned_cols=240 Identities=7% Similarity=-0.079 Sum_probs=161.1
Q ss_pred EEEEcCCCCeEEEEe----------cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC--CCc
Q 019482 68 TIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGH 135 (340)
Q Consensus 68 ~~~~~~~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~ 135 (340)
.++++|||++++++. .++.|.+||..+.+....+................+.|+|||++|+++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 999999999998876 35679999998876655443210001111133468999999999998874 478
Q ss_pred EEEEeCCCCceeec-cccCccceeEEEecCCC-CeEEEeeCCCeEEEEEccCCeeEEEee-----cCCCCceeeEEEccC
Q 019482 136 LRIMHWPSLRIILD-EPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLT-----RNSDEKIELCRFSKD 208 (340)
Q Consensus 136 i~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~ 208 (340)
|.++| .+++.+.. +... . ++.+.|++ +.+++.+.||.+.++|. +++...... ...........+.++
T Consensus 150 v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~ 223 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK 223 (373)
T ss_pred EEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec
Confidence 99999 99887765 4322 2 24455654 45666778999999999 777663322 111111123456666
Q ss_pred CCcceEEEEEecCCcceEEEEECCCCcE--Eeeeecc----------CCCeeEEEECCCCCEEEEeeC----------CC
Q 019482 209 GTKPFLFCTVQRGDKALLAVYDISTWNK--IGHKRLL----------RKPASVLSISLDGKYLAMGSK----------DG 266 (340)
Q Consensus 209 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~----------~~~i~~~~~s~~~~~l~~~~~----------dg 266 (340)
+... +..+..+.+.+.|+..... +..+... ......+.++|+++.++++.. ++
T Consensus 224 ~~~~-----~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~ 298 (373)
T 2mad_H 224 SGRI-----VWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK 298 (373)
T ss_pred CCEE-----EEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCC
Confidence 6542 2223567899999875532 2222111 122344789999998888653 35
Q ss_pred cEEEEeccCceEeecccccccccceeeEEEecCCe-EEEEEe-cCCcEEEEEecCCC
Q 019482 267 DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTAS-KEWGAMITKLTVPA 321 (340)
Q Consensus 267 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i~iw~~~~~~ 321 (340)
.|.++|+.+++.+..+.. +....+++|+|||+ .++++. .++.|.++|....+
T Consensus 299 ~V~VID~~t~~vv~~i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 299 EVTSVTGLVGQTSSQISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred eEEEEECCCCEEEEEEEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 799999999999887743 33689999999998 777777 58999999987544
No 193
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.76 E-value=1.1e-15 Score=123.14 Aligned_cols=203 Identities=8% Similarity=-0.002 Sum_probs=144.5
Q ss_pred CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC
Q 019482 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (340)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~ 141 (340)
+...+.+++++++|+.+++.. ++.|.+||........ +. ......+.+++++++++++++...++.|.+|+.
T Consensus 65 ~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~-~~------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~ 136 (270)
T 1rwi_B 65 GLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV-LP------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAA 136 (270)
T ss_dssp SCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE-CC------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECT
T ss_pred CcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee-ee------cCCcCCCcceEECCCCCEEEEECCCCEEEEEEC
Confidence 345688999999998665555 7789999987654321 11 012356889999999987777777889999986
Q ss_pred CCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecC
Q 019482 142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG 221 (340)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 221 (340)
.+.............+.+++++++++++++...++.|.+||........... .....+..++++++|.. .++..
T Consensus 137 ~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~g~l-----~v~~~ 210 (270)
T 1rwi_B 137 GSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF-TDITAPWGIAVDEAGTV-----YVTEH 210 (270)
T ss_dssp TCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC-SSCCSEEEEEECTTCCE-----EEEET
T ss_pred CCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecc-cCCCCceEEEECCCCCE-----EEEEC
Confidence 6544333222233467889999999877777777899999987665443322 22246889999999863 45556
Q ss_pred CcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE
Q 019482 222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI 278 (340)
Q Consensus 222 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 278 (340)
.++.|.+||................+..++++|+|+++++...++.|+++++...+.
T Consensus 211 ~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 211 NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp TTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 678899999876544322222235688999999999888888899999999876543
No 194
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.75 E-value=4e-16 Score=142.52 Aligned_cols=242 Identities=13% Similarity=0.026 Sum_probs=155.4
Q ss_pred cCCCCeEEEEecCC---CEEEEEec--CceeeeeeccccCCCCCCCCCeEEEEEecCCCeEE-----EccCCCcEEEEeC
Q 019482 72 NPSGDDFVCSTTNG---GCKLFEVY--GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-----AGGVDGHLRIMHW 141 (340)
Q Consensus 72 ~~~~~~l~~~~~d~---~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-----~~~~dg~i~~~d~ 141 (340)
+|+|++++....++ .-.+|... .++ ...+.........|...+..++|||||++|+ .|+.+..|++||+
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQ-EKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSC-CEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCC-cEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 47899888776554 35566554 332 2222221111112445688999999999998 5555678999999
Q ss_pred CCCcee-eccccCccceeEEEecCCCCeEEEeeCCCe-------------EEEEEccCCee--EEEeec-CCCCceeeEE
Q 019482 142 PSLRII-LDEPKAHKSVLDMDFSLDSEFLATTSTDGS-------------ARIWKTEDGVA--WTFLTR-NSDEKIELCR 204 (340)
Q Consensus 142 ~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-------------v~iwd~~~~~~--~~~~~~-~~~~~v~~~~ 204 (340)
.+++.. ..... ......++|+|||+.|+.++.|.. |++|++.+++. ...+.. .+...+..+.
T Consensus 155 ~tg~~~~~~~~~-~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~ 233 (695)
T 2bkl_A 155 DSGEWSKVDVIE-GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSD 233 (695)
T ss_dssp TTCCBCSSCCBS-CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEE
T ss_pred CCCCCcCCcccC-cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEE
Confidence 998865 21111 112268999999999999988766 99999987763 122221 2234678999
Q ss_pred EccCCCcceEEEEEecC-CcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEee---CCCcEEEEeccCceE--
Q 019482 205 FSKDGTKPFLFCTVQRG-DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS---KDGDICVVDVKKMEI-- 278 (340)
Q Consensus 205 ~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~i~d~~~~~~-- 278 (340)
|+|||+++++ ..... ....|.++|..+++. ..+..+...+....+ ++|++++... .++.|.+||+.+++.
T Consensus 234 ~SpDG~~l~~--~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~ 309 (695)
T 2bkl_A 234 LSRDGKYLFV--YILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARAS 309 (695)
T ss_dssp ECTTSCCEEE--EEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGG
T ss_pred ECCCCCEEEE--EEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccC
Confidence 9999997322 11111 234788887766553 344444445556666 6666444443 257899999987653
Q ss_pred eecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482 279 NHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 279 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
...+...+....+.+++|+ ++.++++...|+..+||.++..
T Consensus 310 ~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~ 350 (695)
T 2bkl_A 310 WKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK 350 (695)
T ss_dssp CEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred CeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC
Confidence 1122222213468889998 7789999999999999988754
No 195
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.75 E-value=5.5e-14 Score=114.83 Aligned_cols=277 Identities=8% Similarity=-0.040 Sum_probs=178.8
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 84 (340)
..+.++++.++ +.+.+... .++.|..++.+ ... ....+..+...+.++++.++|..+++...+
T Consensus 20 ~~p~~i~~d~~---g~l~v~~~------~~~~v~~~~~~---~~~-----~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~ 82 (300)
T 2qc5_A 20 SGPYGITSSED---GKVWFTQH------KANKISSLDQS---GRI-----KEFEVPTPDAKVMCLIVSSLGDIWFTENGA 82 (300)
T ss_dssp CCEEEEEECTT---SCEEEEET------TTTEEEEECTT---SCE-----EEEECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred CCcceeeECCC---CCEEEEcC------CCCeEEEECCC---Cce-----EEEECCCCCCcceeEEECCCCCEEEEecCC
Confidence 35667777763 34555322 23445555433 211 112233344679999999999877776667
Q ss_pred CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeec-cccCccceeEEEec
Q 019482 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMDFS 163 (340)
Q Consensus 85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~i~~~~~~ 163 (340)
+.|..+|.. ++.. .+... .....+.++++.++++++++...++.|..+|.. ++.... .......+..+++.
T Consensus 83 ~~v~~~d~~-g~~~-~~~~~-----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d 154 (300)
T 2qc5_A 83 NKIGKLSKK-GGFT-EYPLP-----QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLG 154 (300)
T ss_dssp TEEEEECTT-SCEE-EEECS-----STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEEC
T ss_pred CeEEEECCC-CCeE-EecCC-----CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEEC
Confidence 789999877 4432 22111 123568999999999888877768889999987 554322 22233468899999
Q ss_pred CCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee-eec
Q 019482 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRL 242 (340)
Q Consensus 164 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-~~~ 242 (340)
++++++++...++.|..+|. +++............+..+++++++.. .++....+.|.+||. +++.... ...
T Consensus 155 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l-----~v~~~~~~~i~~~~~-~g~~~~~~~~~ 227 (300)
T 2qc5_A 155 SDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGAL-----WFVEIMGNKIGRITT-TGEISEYDIPT 227 (300)
T ss_dssp TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSE-----EEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred CCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCE-----EEEccCCCEEEEEcC-CCcEEEEECCC
Confidence 99997776666789999998 555443222223346889999999873 344455678999998 4444322 222
Q ss_pred cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482 243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL 317 (340)
Q Consensus 243 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~ 317 (340)
....+..++++++|++.++...++.|..||. +++......... ...+.+++++++|+++++.. . .|..++.
T Consensus 228 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 228 PNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTE-NAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp TTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCST-TCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCcc-CCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 3456789999999987776666789999998 444332211112 34688999999998666665 4 5555553
No 196
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.75 E-value=3.7e-15 Score=123.53 Aligned_cols=240 Identities=5% Similarity=-0.083 Sum_probs=159.7
Q ss_pred CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCC
Q 019482 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA 112 (340)
Q Consensus 33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 112 (340)
.++.|.+++.. +......+. ....+..++++++++.+++...++.|.+||..+.+....+..... ....
T Consensus 62 ~~~~v~viD~~--------t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~--~~~~ 130 (328)
T 3dsm_A 62 NSHVIFAIDIN--------TFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM--DMES 130 (328)
T ss_dssp GGTEEEEEETT--------TCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC--CTTT
T ss_pred CCCEEEEEECc--------ccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc--cccC
Confidence 34567777665 233333343 346789999999985444443788999999998876554432110 0011
Q ss_pred CCeEEEEEecCCCeEEEcc-CCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCC----------CeEEEE
Q 019482 113 GPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD----------GSARIW 181 (340)
Q Consensus 113 ~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------~~v~iw 181 (340)
.....+++ .+++.+++.. .++.|.++|+.+++....+... .....+.++|+|++++++..+ +.|.++
T Consensus 131 ~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~i 208 (328)
T 3dsm_A 131 GSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRI 208 (328)
T ss_dssp CBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEE
T ss_pred CCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEE
Confidence 24456677 4444444433 4889999999998876655433 345789999999977777654 789999
Q ss_pred EccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee--eeccCCCeeEEEECCC-CCE
Q 019482 182 KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH--KRLLRKPASVLSISLD-GKY 258 (340)
Q Consensus 182 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~i~~~~~s~~-~~~ 258 (340)
|.++++....+.......+..++|+|+++.+ ..... .|.+||..+++.... ..........++++|+ +++
T Consensus 209 d~~t~~v~~~~~~~~g~~p~~la~~~d~~~l-----yv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~l 281 (328)
T 3dsm_A 209 DAETFTVEKQFKFKLGDWPSEVQLNGTRDTL-----YWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEV 281 (328)
T ss_dssp ETTTTEEEEEEECCTTCCCEEEEECTTSCEE-----EEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCE
T ss_pred ECCCCeEEEEEecCCCCCceeEEEecCCCEE-----EEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeE
Confidence 9999988777654333468999999999863 33322 899999988775321 1111356788999995 555
Q ss_pred EEEe----eCCCcEEEEeccCceEeecccccccccceeeEEE
Q 019482 259 LAMG----SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF 296 (340)
Q Consensus 259 l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~ 296 (340)
.++. ..++.|.+||.. ++.+..+.. +.....++|
T Consensus 282 yva~~~~y~~~~~V~v~d~~-g~~~~~i~~---G~~P~~~~~ 319 (328)
T 3dsm_A 282 YVADAIDYQQQGIVYRYSPQ-GKLIDEFYV---GIIPGAFCW 319 (328)
T ss_dssp EEEECTTSSSEEEEEEECTT-CCEEEEEEE---EESEEEEEE
T ss_pred EEEcccccccCCEEEEECCC-CCEEEEEEe---ccCcceEEE
Confidence 5555 568899999998 777776643 234556665
No 197
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.74 E-value=2.5e-15 Score=124.85 Aligned_cols=266 Identities=11% Similarity=-0.017 Sum_probs=173.5
Q ss_pred CCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe----------cCCCEEEEEecCceeeeeecc
Q 019482 34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLA 103 (340)
Q Consensus 34 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~ 103 (340)
++.+.+++.. +......+.....+ . ++++|||++++++. .++.|.+||..+.+....+..
T Consensus 58 ~~~V~ViD~~--------t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v 127 (386)
T 3sjl_D 58 VTQQFVIDGE--------AGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIEL 127 (386)
T ss_dssp SEEEEEEETT--------TTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred CCEEEEEECC--------CCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEEC
Confidence 3456666554 33444445544444 4 99999999888775 356799999999887666533
Q ss_pred ccCCCCCCCCCeEEEEEecCCCeEEEccC--CCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEE
Q 019482 104 KKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIW 181 (340)
Q Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iw 181 (340)
..............+.|+|||++++++.. ++.|.++|+.+++.+..+.-.. . ...+....+.+++.+.||++.+.
T Consensus 128 ~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v 204 (386)
T 3sjl_D 128 PDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKV 204 (386)
T ss_dssp TTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEE
T ss_pred CCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEE
Confidence 21011111234567999999999888764 6899999999998877664321 1 12232244567777788999888
Q ss_pred EccC-CeeEEEeecCC---CCce-eeEEEc-cCCCcceEEEEEecCCcceEEEEECCCCc--EEeeeec----------c
Q 019482 182 KTED-GVAWTFLTRNS---DEKI-ELCRFS-KDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRL----------L 243 (340)
Q Consensus 182 d~~~-~~~~~~~~~~~---~~~v-~~~~~~-~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~----------~ 243 (340)
++.+ ++......... ..++ ....|. ++|+. +..+.++.+.+.|+.+.. .+..... .
T Consensus 205 ~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~------~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~ 278 (386)
T 3sjl_D 205 AFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRL------VWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR 278 (386)
T ss_dssp ECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEE------EEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE
T ss_pred ECCCCCeEEEeecceeccccccccccceeEcCCCcE------EEEeCCCEEEEEECCCCcceeecceecccccccccccc
Confidence 8876 55432221111 1122 224564 67753 334447899999997664 2222220 1
Q ss_pred CCCeeEEEECCCCCEEEEeeC----------CCcEEEEeccCceEeecccccccccceeeEEEecCCe-EEEE-EecCCc
Q 019482 244 RKPASVLSISLDGKYLAMGSK----------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLT-ASKEWG 311 (340)
Q Consensus 244 ~~~i~~~~~s~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~-~~~dg~ 311 (340)
......++++|+++.+++... .+.|.++|+.+++.+..+..+ ..++++++++|++ +|++ ...++.
T Consensus 279 p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~ 355 (386)
T 3sjl_D 279 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKT 355 (386)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTE
T ss_pred CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCe
Confidence 123445778999998888753 257999999999999887653 4789999999996 5655 455899
Q ss_pred EEEEEecCCC
Q 019482 312 AMITKLTVPA 321 (340)
Q Consensus 312 i~iw~~~~~~ 321 (340)
|.++|....+
T Consensus 356 VsViD~~t~k 365 (386)
T 3sjl_D 356 LYIHDAESGE 365 (386)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECCCCc
Confidence 9999986544
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.74 E-value=8.9e-15 Score=117.87 Aligned_cols=212 Identities=12% Similarity=0.110 Sum_probs=157.3
Q ss_pred cEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCC-CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceee
Q 019482 20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD 98 (340)
Q Consensus 20 ~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~ 98 (340)
++++.++ .++.|.+|+.. +......+..+. ..+.++.++|+|++++ +.++.|+.||. +++..
T Consensus 6 ~~lv~~~------~~~~v~~~d~~--------tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~ 68 (276)
T 3no2_A 6 HLLVGGS------GWNKIAIINKD--------TKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGREL 68 (276)
T ss_dssp EEEEECT------TCSEEEEEETT--------TTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEE
T ss_pred cEEEeeC------CCCEEEEEECC--------CCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEE
Confidence 5666555 45668888764 444445566665 4789999999999888 34566999998 67766
Q ss_pred eeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-CCcEEEEeCCCCceeeccc------cCccceeEEEecCCCCeEEE
Q 019482 99 INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIILDEP------KAHKSVLDMDFSLDSEFLAT 171 (340)
Q Consensus 99 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~ 171 (340)
..+... ....+.++.+.++|+.+++.+. ++.|..+|. +++.+..+. .++.....+.+.++|+++++
T Consensus 69 W~~~~~------~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~ 141 (276)
T 3no2_A 69 WNIAAP------AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVP 141 (276)
T ss_dssp EEEECC------TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEE
T ss_pred EEEcCC------CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEE
Confidence 665431 2246788999999999998876 777888875 666554443 22234556788999999999
Q ss_pred eeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC------C
Q 019482 172 TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR------K 245 (340)
Q Consensus 172 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~------~ 245 (340)
...++.|..||.+ ++.+.++... ..+.++...+++.. ++++..++.|..+|..+++.+..+.... .
T Consensus 142 ~~~~~~v~~~d~~-G~~~w~~~~~--~~~~~~~~~~~g~~-----~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~ 213 (276)
T 3no2_A 142 LFATSEVREIAPN-GQLLNSVKLS--GTPFSSAFLDNGDC-----LVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLF 213 (276)
T ss_dssp ETTTTEEEEECTT-SCEEEEEECS--SCCCEEEECTTSCE-----EEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCS
T ss_pred ecCCCEEEEECCC-CCEEEEEECC--CCccceeEcCCCCE-----EEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcccc
Confidence 9999999999987 9988888643 34677888899885 5666677789999999999887776432 1
Q ss_pred CeeEEEECCCCCEEEEee
Q 019482 246 PASVLSISLDGKYLAMGS 263 (340)
Q Consensus 246 ~i~~~~~s~~~~~l~~~~ 263 (340)
.+..+...++|+.+++..
T Consensus 214 ~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 214 FVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEEEEECTTSCEEEEEE
T ss_pred ccccceEcCCCCEEEEec
Confidence 267788888998887764
No 199
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.74 E-value=6e-15 Score=130.18 Aligned_cols=234 Identities=10% Similarity=0.022 Sum_probs=168.7
Q ss_pred CCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC--CCceeecc
Q 019482 73 PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP--SLRIILDE 150 (340)
Q Consensus 73 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~--~~~~~~~~ 150 (340)
|.+..+++...++.|.++|..+++....+.. ...+..+.|+|||+++++++.|+.|.+||+. +++.+..+
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~--------g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i 236 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT--------GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI 236 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC--------SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC--------CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEE
Confidence 4445666777789999999999877665532 2356789999999999999999999999995 77766666
Q ss_pred ccCccceeEEEec----CCCCeEEEeeC-CCeEEEEEccCCeeEEEeecCC----------CCceeeEEEccCCCcceEE
Q 019482 151 PKAHKSVLDMDFS----LDSEFLATTST-DGSARIWKTEDGVAWTFLTRNS----------DEKIELCRFSKDGTKPFLF 215 (340)
Q Consensus 151 ~~~~~~i~~~~~~----~~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~~~ 215 (340)
.... ....++|+ |||+++++++. ++++.++|..+.+.+..+.... ...+..+..++++...
T Consensus 237 ~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~--- 312 (567)
T 1qks_A 237 KIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF--- 312 (567)
T ss_dssp ECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEE---
T ss_pred ecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEE---
Confidence 5433 46789999 69998887764 5899999999999887765321 1256788888887642
Q ss_pred EEEecCCcceEEEEECCCCcEEeeee-ccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceEeecccc-ccccccee
Q 019482 216 CTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKR-LHLGTSIA 292 (340)
Q Consensus 216 ~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-~~~~~~i~ 292 (340)
++....++.|.++|....+.+.... ........+.|+|+|++++++. .++.|.++|+.+++....+.. +....+-.
T Consensus 313 -vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~ 391 (567)
T 1qks_A 313 -IVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGR 391 (567)
T ss_dssp -EEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTT
T ss_pred -EEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcc
Confidence 4555778999999998765332222 2234567889999999987765 578899999999987766543 21111223
Q ss_pred eEE-EecCC-eEEEEEe-cCCcEEEEEecC
Q 019482 293 LVE-FCPTQ-RVVLTAS-KEWGAMITKLTV 319 (340)
Q Consensus 293 ~~~-~~~~~-~~l~~~~-~dg~i~iw~~~~ 319 (340)
.+. ++|++ ..+++.. .++.|.+++...
T Consensus 392 g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 392 GANFVHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp CEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred ceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 333 57874 4445543 468999999875
No 200
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.74 E-value=1e-14 Score=120.11 Aligned_cols=248 Identities=13% Similarity=0.049 Sum_probs=166.2
Q ss_pred ecCCCCeeEEEEcCCCCeEEE-------EecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEcc
Q 019482 60 DESEGDPMTIAVNPSGDDFVC-------STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGG 131 (340)
Q Consensus 60 ~~h~~~v~~~~~~~~~~~l~~-------~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~ 131 (340)
...-..+.+++|+++|..+++ ...++.|.+||..+++........ ...+...+.+++++++ ++++++..
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~---~~~~~~~~~~i~~~~~~g~l~v~~~ 90 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPE---VNGYGGIPAGCQCDRDANQLFVADM 90 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCE---ETTEECCEEEEEECSSSSEEEEEET
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecc---cCCCCCCCceEEEecCCCcEEEEEC
Confidence 344556889999999987777 577788999998776543211100 0012356889999999 76555544
Q ss_pred CCCcEEEEeCCCCceeec-ccc----CccceeEEEecCCCCeEEEeeCC---------------CeEEEEEccCCeeEEE
Q 019482 132 VDGHLRIMHWPSLRIILD-EPK----AHKSVLDMDFSLDSEFLATTSTD---------------GSARIWKTEDGVAWTF 191 (340)
Q Consensus 132 ~dg~i~~~d~~~~~~~~~-~~~----~~~~i~~~~~~~~~~~l~~~~~d---------------~~v~iwd~~~~~~~~~ 191 (340)
.+.|.+||.. ++.... ... ....+.+++++++|+++++...+ +.|..+|.. ++....
T Consensus 91 -~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (314)
T 1pjx_A 91 -RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV 167 (314)
T ss_dssp -TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred -CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
Confidence 4479999987 654332 211 11357899999999887776654 567777765 544332
Q ss_pred eecCCCCceeeEEEc----cCCCcceEEEEEecCCcceEEEEECC-CCcE-----EeeeeccC-CCeeEEEECCCCCEEE
Q 019482 192 LTRNSDEKIELCRFS----KDGTKPFLFCTVQRGDKALLAVYDIS-TWNK-----IGHKRLLR-KPASVLSISLDGKYLA 260 (340)
Q Consensus 192 ~~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~-----~~~~~~~~-~~i~~~~~s~~~~~l~ 260 (340)
.. . ......++|+ |+++.+ .++...++.|.+||.. +++. ...+..+. .....++++++|++++
T Consensus 168 ~~-~-~~~~~~i~~~~~~d~dg~~l----~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v 241 (314)
T 1pjx_A 168 DT-A-FQFPNGIAVRHMNDGRPYQL----IVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLV 241 (314)
T ss_dssp EE-E-ESSEEEEEEEECTTSCEEEE----EEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEE
T ss_pred cc-C-CCCcceEEEecccCCCCCEE----EEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEE
Confidence 22 1 2346789999 998642 3444567899999986 4432 11222222 4578899999999888
Q ss_pred EeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCe-EEEEEecCCcEEEEEecCCC
Q 019482 261 MGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 261 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~ 321 (340)
+...++.|.+||..+++....+. .+ ...+.+++|+|+++ ++++...++.|..+++..+.
T Consensus 242 ~~~~~~~i~~~d~~~g~~~~~~~-~~-~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 242 ANWGSSHIEVFGPDGGQPKMRIR-CP-FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp EEETTTEEEEECTTCBSCSEEEE-CS-SSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred EEcCCCEEEEEcCCCCcEeEEEe-CC-CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence 87778899999998676554442 22 35789999999998 45555667889998887544
No 201
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.73 E-value=4.2e-16 Score=143.38 Aligned_cols=242 Identities=12% Similarity=0.033 Sum_probs=156.5
Q ss_pred CCCCeeEEEEcCCCCeEEEEecC-----CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCc-
Q 019482 62 SEGDPMTIAVNPSGDDFVCSTTN-----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH- 135 (340)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~- 135 (340)
|...+..++|||||++||.+..+ ..|++||+.+++....... ...+..++|+|| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~--------~~~~~~~~wspD-~~l~~~~~~~~~ 231 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELK--------WVKFSGLAWLGN-DALLYSRFAEPK 231 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEE--------EEESCCCEESTT-SEEEEEECCCC-
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCC--------CceeccEEEECC-CEEEEEEecCcc
Confidence 44468899999999999877654 3599999998876432111 112346899999 88888776554
Q ss_pred -------------EEEEeCCCCce----eeccccCccceeEEEecCCCCeEEEeeCCC-----eEEEEEccCC--eeEEE
Q 019482 136 -------------LRIMHWPSLRI----ILDEPKAHKSVLDMDFSLDSEFLATTSTDG-----SARIWKTEDG--VAWTF 191 (340)
Q Consensus 136 -------------i~~~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~--~~~~~ 191 (340)
|++|++.++.. +.....+...+..+.|+|||++|+..+.++ .|++||+.++ ++...
T Consensus 232 ~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 311 (741)
T 1yr2_A 232 EGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTA 311 (741)
T ss_dssp -------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEE
T ss_pred cccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEE
Confidence 89999877652 222222223578999999999988777543 8999999877 31445
Q ss_pred eecCCCCceeeEEEccCCCcceEEEEEe--cCCcceEEEEECCCC--cEEeeeeccCCCeeEEEECCCCCEEEEeeCCCc
Q 019482 192 LTRNSDEKIELCRFSKDGTKPFLFCTVQ--RGDKALLAVYDISTW--NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGD 267 (340)
Q Consensus 192 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~d~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 267 (340)
+..... ..... ++|+++.+++ .+ ...+..|.+||+.++ +....+..+...+..+.++ ++.++++...|+.
T Consensus 312 l~~~~~-~~~~~-~~~dg~~l~~---~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~ 385 (741)
T 1yr2_A 312 LIPDLK-AQWDF-VDGVGDQLWF---VSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK 385 (741)
T ss_dssp EECSSS-SCEEE-EEEETTEEEE---EECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE
T ss_pred ecCCCC-ceEEE-EeccCCEEEE---EECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence 544433 33344 3488887432 22 123567999999875 2333333344456677777 5667788888988
Q ss_pred EEEEecc-CceEeecccccccccceeeEEEecCCeEEEEE----ecCCcEEEEEecC
Q 019482 268 ICVVDVK-KMEINHWSKRLHLGTSIALVEFCPTQRVVLTA----SKEWGAMITKLTV 319 (340)
Q Consensus 268 i~i~d~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~iw~~~~ 319 (340)
.+||.+. +++....+.... ...+..++++|+++.|+.. ...+.+++|++..
T Consensus 386 ~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 386 SQVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp EEEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred EEEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 7777554 344444443222 3578899999998755522 2347788888754
No 202
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.72 E-value=6.8e-14 Score=119.25 Aligned_cols=239 Identities=7% Similarity=-0.081 Sum_probs=163.8
Q ss_pred CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC--cEEEEeC
Q 019482 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG--HLRIMHW 141 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~~d~ 141 (340)
..+..++|+++|+++++...++.|++||..++........ ..... ++|+|+++.|+++..++ .|.+++.
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~--------~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~ 201 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG--------FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMK 201 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET--------CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc--------CCCCc-eeEecCCCcEEEEecCCCceEEEEEc
Confidence 4588999999999777777778999999987765433221 12233 89999999888887765 7888887
Q ss_pred CCCceeecc----ccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEe---ecCCCCce-e-eEEEccCCCcc
Q 019482 142 PSLRIILDE----PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL---TRNSDEKI-E-LCRFSKDGTKP 212 (340)
Q Consensus 142 ~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~~~v-~-~~~~~~~~~~~ 212 (340)
..+.....+ ......+.+++++|++..|+.+..++.|+.||..++...... .......- . .++|+|++..+
T Consensus 202 ~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l 281 (409)
T 3hrp_A 202 ASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF 281 (409)
T ss_dssp GGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred CCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence 655432222 113346788999995555555777889999999876543220 11111111 3 89999965542
Q ss_pred eEEEEEecCCcceEEEEECCCCcEEeeeeccC---------------CCeeEEEECCCCCEEEEee-CCCcEEEEeccCc
Q 019482 213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLR---------------KPASVLSISLDGKYLAMGS-KDGDICVVDVKKM 276 (340)
Q Consensus 213 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~---------------~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~ 276 (340)
.++...++.|+.||.... +..+.... .....++++|+|+++++-. .++.|+.|++.++
T Consensus 282 ----yv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G 355 (409)
T 3hrp_A 282 ----YMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG 355 (409)
T ss_dssp ----EEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred ----EEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence 455667889999997643 22222221 3467899999999777777 7899999998777
Q ss_pred eEeeccccc-c-----------cccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482 277 EINHWSKRL-H-----------LGTSIALVEFCPTQRVVLTASKEWGAMITKL 317 (340)
Q Consensus 277 ~~~~~~~~~-~-----------~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~ 317 (340)
+........ . .-.....++++++|.++++-..++.|+.+.+
T Consensus 356 ~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 356 YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 654332110 0 0135789999999998888888888887765
No 203
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.72 E-value=1.1e-13 Score=112.96 Aligned_cols=240 Identities=9% Similarity=0.023 Sum_probs=168.6
Q ss_pred cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEe
Q 019482 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH 140 (340)
Q Consensus 61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d 140 (340)
.....+.++++.++|+.+++...++.|.+||.. ++... +... .....+.++++.++++++++...++.|..+|
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~-----~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d 89 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVP-----TPDAKVMCLIVSSLGDIWFTENGANKIGKLS 89 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECS-----STTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECC-----CCCCcceeEEECCCCCEEEEecCCCeEEEEC
Confidence 345678999999999977777677889999987 44322 1111 1235789999999998777776678899999
Q ss_pred CCCCceee-ccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEe
Q 019482 141 WPSLRIIL-DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (340)
Q Consensus 141 ~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 219 (340)
.. ++... ........+..+++.++++++++...++.|..+|.. ++............+..+++.++++. .++
T Consensus 90 ~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l-----~v~ 162 (300)
T 2qc5_A 90 KK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNAL-----WFT 162 (300)
T ss_dssp TT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSE-----EEE
T ss_pred CC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCE-----EEE
Confidence 77 55432 222223568899999999888877768899999987 55543222223346889999999983 345
Q ss_pred cCCcceEEEEECCCCcEEee-eeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEec
Q 019482 220 RGDKALLAVYDISTWNKIGH-KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298 (340)
Q Consensus 220 ~~~d~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~ 298 (340)
...++.|..+|. +++.... .......+..++++++|++.++....+.|.+||. +++......... ...+.++++++
T Consensus 163 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~d~ 239 (300)
T 2qc5_A 163 ENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTP-NARPHAITAGK 239 (300)
T ss_dssp ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEECS
T ss_pred ecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCC-CCCceEEEECC
Confidence 555788999998 5554322 1123346789999999987777666778999998 444433221222 35688999999
Q ss_pred CCeEEEEEecCCcEEEEEe
Q 019482 299 TQRVVLTASKEWGAMITKL 317 (340)
Q Consensus 299 ~~~~l~~~~~dg~i~iw~~ 317 (340)
+|+++++...++.|..++.
T Consensus 240 ~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 240 NSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp TTCEEEEETTTTEEEEECT
T ss_pred CCCEEEeccCCCeEEEECC
Confidence 9997777767788888875
No 204
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.70 E-value=1.1e-14 Score=123.16 Aligned_cols=265 Identities=9% Similarity=-0.054 Sum_probs=174.9
Q ss_pred CceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe----------cCCCEEEEEecCceeeeeeccc
Q 019482 35 SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLAK 104 (340)
Q Consensus 35 ~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~ 104 (340)
+.+.+++.. +......+..-..+ .++++|||++++++. .++.|.++|..+.+....+...
T Consensus 99 ~~VsVID~~--------t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~ 168 (426)
T 3c75_H 99 TQQFVIDGS--------TGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELP 168 (426)
T ss_dssp EEEEEEETT--------TTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEET
T ss_pred CeEEEEECC--------CCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECC
Confidence 567777665 44444445544444 899999999888776 3568999999998876665321
Q ss_pred cCCCCCCCCCeEEEEEecCCCeEEEccC--CCcEEEEeCCCCceeeccccCccceeEEEecCCC-CeEEEeeCCCeEEEE
Q 019482 105 KMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIW 181 (340)
Q Consensus 105 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iw 181 (340)
.............+.|+|||++++++.. ++.|.+.|+.+++.+..+.-... ....|++ ..+++.+.||++.+.
T Consensus 169 g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V 244 (426)
T 3c75_H 169 DAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARV 244 (426)
T ss_dssp TCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEE
T ss_pred CccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEE
Confidence 0001111133467899999999998764 57899999999988766643221 2334433 455666678888888
Q ss_pred EccCCeeEEE----eecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEE--eeeec----------cCC
Q 019482 182 KTEDGVAWTF----LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI--GHKRL----------LRK 245 (340)
Q Consensus 182 d~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~--~~~~~----------~~~ 245 (340)
+..+++.... +..........+.+.+++..+ +.....+.+.+.|....... ..+.. ...
T Consensus 245 ~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~-----~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~ 319 (426)
T 3c75_H 245 DFADGETKVTNTEVFHTEDELLINHPAFSLRSGRL-----VWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPG 319 (426)
T ss_dssp ECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEE-----EEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEEC
T ss_pred ECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEE-----EEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccC
Confidence 8765554422 111111112345678888863 33345678999998765421 11110 011
Q ss_pred CeeEEEECCCCCEEEEeeC----------CCcEEEEeccCceEeecccccccccceeeEEEecCCe-EEEEEe-cCCcEE
Q 019482 246 PASVLSISLDGKYLAMGSK----------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTAS-KEWGAM 313 (340)
Q Consensus 246 ~i~~~~~s~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i~ 313 (340)
....++++|+++.+++... ++.|.++|+.+.+.+..+..+ ....+++|+|||+ +++++. .++.|.
T Consensus 320 g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~Vs 396 (426)
T 3c75_H 320 GWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLH 396 (426)
T ss_dssp SSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred CceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEE
Confidence 2233789999988877643 357999999999998877543 3689999999998 888877 589999
Q ss_pred EEEecCCC
Q 019482 314 ITKLTVPA 321 (340)
Q Consensus 314 iw~~~~~~ 321 (340)
|+|+...+
T Consensus 397 VID~~t~k 404 (426)
T 3c75_H 397 IYDAATGE 404 (426)
T ss_dssp EEETTTCC
T ss_pred EEECCCCC
Confidence 99986544
No 205
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.69 E-value=1.5e-13 Score=112.30 Aligned_cols=230 Identities=8% Similarity=-0.002 Sum_probs=152.4
Q ss_pred ecCCCCeeEEEEcCCCC-eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEE
Q 019482 60 DESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI 138 (340)
Q Consensus 60 ~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 138 (340)
..+..-..+..|+|++. .+++...++.|..||..++.... . .....+.+++++++|+++++ . ++.|.+
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~--------~~~~~~~~i~~~~dG~l~v~-~-~~~l~~ 77 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-V--------TMDAPVSSVALRQSGGYVAT-I-GTKFCA 77 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-E--------ECSSCEEEEEEBTTSSEEEE-E-TTEEEE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-E--------eCCCceEEEEECCCCCEEEE-E-CCeEEE
Confidence 33444566899999655 55566667889999998765421 1 12357899999999995554 3 567999
Q ss_pred EeCCCCceeecccc----CccceeEEEecCCCCeEEEeeCC---------CeEEEEEccC-CeeEEEeecCCCCceeeEE
Q 019482 139 MHWPSLRIILDEPK----AHKSVLDMDFSLDSEFLATTSTD---------GSARIWKTED-GVAWTFLTRNSDEKIELCR 204 (340)
Q Consensus 139 ~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d---------~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~ 204 (340)
||.++++....... ....+..++++|+|+++++...+ ..-.+|.+.. ++... +... ......++
T Consensus 78 ~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~-~~~pngi~ 155 (297)
T 3g4e_A 78 LNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQ-VDISNGLD 155 (297)
T ss_dssp EETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEE-ESBEEEEE
T ss_pred EECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-Eeec-cccccceE
Confidence 99887764322111 12357899999999976654321 2345555543 33322 2222 23468899
Q ss_pred EccCCCcceEEEEEecCCcceEEEEEC--CCCcEE-----eeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce
Q 019482 205 FSKDGTKPFLFCTVQRGDKALLAVYDI--STWNKI-----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME 277 (340)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~d~~i~i~d~--~~~~~~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 277 (340)
|+|+++.+ .++...++.|.+||+ .++... ..+.........++++++|++.++...++.|..||..+++
T Consensus 156 ~spdg~~l----yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~ 231 (297)
T 3g4e_A 156 WSLDHKIF----YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK 231 (297)
T ss_dssp ECTTSCEE----EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC
T ss_pred EcCCCCEE----EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce
Confidence 99999863 345566789999987 455431 1122223457889999999888877778889999999888
Q ss_pred EeecccccccccceeeEEEe-cCCeEEEEEec
Q 019482 278 INHWSKRLHLGTSIALVEFC-PTQRVVLTASK 308 (340)
Q Consensus 278 ~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~ 308 (340)
.+..+.. + ...+++++|. ||++.|..++.
T Consensus 232 ~~~~i~~-p-~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 232 RLQTVKL-P-VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEEEC-S-SSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEEEEC-C-CCCceEEEEeCCCCCEEEEEcC
Confidence 7776643 2 2478999998 88876654443
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.66 E-value=3.3e-14 Score=130.79 Aligned_cols=241 Identities=13% Similarity=0.062 Sum_probs=153.5
Q ss_pred cCCCCeEEEEecCC---CEEEEEecCc----eeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC-----CcEEEE
Q 019482 72 NPSGDDFVCSTTNG---GCKLFEVYGG----ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRIM 139 (340)
Q Consensus 72 ~~~~~~l~~~~~d~---~i~iw~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~ 139 (340)
+|+|++++....++ .-.+|..... .....+.........+...+..++|||||++|+.+..+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 48999888766554 3566766532 22222211111111123367889999999999876543 469999
Q ss_pred eCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCe--------------EEEEEccCCee--EEEeec-CCCCceee
Q 019482 140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGS--------------ARIWKTEDGVA--WTFLTR-NSDEKIEL 202 (340)
Q Consensus 140 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~--------------v~iwd~~~~~~--~~~~~~-~~~~~v~~ 202 (340)
|+.+++.+... .....+..++|+|| +.|+.++.++. |++|++.+++. ...+.. .+...+..
T Consensus 195 dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~ 272 (741)
T 1yr2_A 195 GVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG 272 (741)
T ss_dssp ETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred ECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence 99998865431 11123468999999 98888876554 88999877652 222221 11224789
Q ss_pred EEEccCCCcceEEEEEecC--CcceEEEEECCCC--cEEeeeeccCCCeeEEEECCCCCEEEEeeCC----CcEEEEecc
Q 019482 203 CRFSKDGTKPFLFCTVQRG--DKALLAVYDISTW--NKIGHKRLLRKPASVLSISLDGKYLAMGSKD----GDICVVDVK 274 (340)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~i~d~~ 274 (340)
+.|+|||+++++ ..... ....|.+||+.++ +....+..+....... ++|+|+.|+..+.+ +.|.+||+.
T Consensus 273 ~~~SpDG~~l~~--~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~ 349 (741)
T 1yr2_A 273 ASVSSDGRWVVI--TSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLS 349 (741)
T ss_dssp EEECTTSCEEEE--EEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECS
T ss_pred EEECCCCCEEEE--EEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC
Confidence 999999997432 11111 3568999999876 3134444444444444 35899988887653 459999998
Q ss_pred Cc--eEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482 275 KM--EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 275 ~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
++ +....+ ..+ ...+.+++|+ ++.++++...|+..+||.++..
T Consensus 350 ~~~~~~~~l~-~~~-~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~ 394 (741)
T 1yr2_A 350 GSTPRFDTVV-PES-KDNLESVGIA-GNRLFASYIHDAKSQVLAFDLD 394 (741)
T ss_dssp SSSCEEEEEE-CCC-SSEEEEEEEE-BTEEEEEEEETTEEEEEEEETT
T ss_pred CCccccEEEe-cCC-CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC
Confidence 74 333322 233 4467788887 6788899999999999988753
No 207
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.65 E-value=4.7e-13 Score=112.01 Aligned_cols=287 Identities=10% Similarity=0.056 Sum_probs=172.8
Q ss_pred ccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEE-----------c--CCCCeEEE-EecC
Q 019482 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV-----------N--PSGDDFVC-STTN 84 (340)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-----------~--~~~~~l~~-~~~d 84 (340)
..++.+............+.+.++++....+. .-.....+..-.+......| + +++++|++ +..+
T Consensus 27 ~~y~~~~~~~~~~~~~d~la~vDvdp~s~ty~-~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s 105 (462)
T 2ece_A 27 LAYVACLYTGTGINRADFIAVVDVNPKSETYS-KIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRS 105 (462)
T ss_dssp EEEEEEECTTTTCCCCCEEEEEECCTTSTTTT-SEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTT
T ss_pred EEEEEeeccCCCCCCCCeEEEEECCCCCCCcc-eEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCC
Confidence 33444443322233566678888876554332 11222222222223444444 6 77887765 5566
Q ss_pred CCEEEEEecCc----eeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC------CcEEEEeCCCCceeeccccCc
Q 019482 85 GGCKLFEVYGG----ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------GHLRIMHWPSLRIILDEPKAH 154 (340)
Q Consensus 85 ~~i~iw~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~ 154 (340)
+.|.++|+.+. +....+...+...-........+..+|+| .++++..+ |.|.++|.++.+.+.+.....
T Consensus 106 ~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~ 184 (462)
T 2ece_A 106 SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDR 184 (462)
T ss_dssp CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBC
T ss_pred CeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCC
Confidence 88999999755 33322210000000011244667888999 66666555 789999999999887775332
Q ss_pred c---ceeEEEecCCCCeEEEee-------------------CCCeEEEEEccCCeeEEEeecC-CCCceeeEEE--ccCC
Q 019482 155 K---SVLDMDFSLDSEFLATTS-------------------TDGSARIWKTEDGVAWTFLTRN-SDEKIELCRF--SKDG 209 (340)
Q Consensus 155 ~---~i~~~~~~~~~~~l~~~~-------------------~d~~v~iwd~~~~~~~~~~~~~-~~~~v~~~~~--~~~~ 209 (340)
. --..+-|+|+++.+++.. .+.+|.+||+.+++.+.++... .......+.| +|++
T Consensus 185 ~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg 264 (462)
T 2ece_A 185 GDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTK 264 (462)
T ss_dssp TTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTC
T ss_pred CCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCC
Confidence 2 234578899999888884 3689999999999888888753 2223455655 9999
Q ss_pred CcceEEEEEe-cCCcceEEEEECCCCcE--Eeee--ec----------------cCCCeeEEEECCCCCEEEEeeC-CCc
Q 019482 210 TKPFLFCTVQ-RGDKALLAVYDISTWNK--IGHK--RL----------------LRKPASVLSISLDGKYLAMGSK-DGD 267 (340)
Q Consensus 210 ~~~~~~~~~~-~~~d~~i~i~d~~~~~~--~~~~--~~----------------~~~~i~~~~~s~~~~~l~~~~~-dg~ 267 (340)
++.|+.+-++ ...+++|.+|..+.++. ++.+ .. .......+.+||||++|+++.. .+.
T Consensus 265 ~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~ 344 (462)
T 2ece_A 265 LMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGE 344 (462)
T ss_dssp CEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTE
T ss_pred CEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCE
Confidence 9755433211 11456777666544321 1111 00 0234678999999999998875 578
Q ss_pred EEEEeccC---ceEeeccccccc------------ccceeeEEEecCCeEEEEEe
Q 019482 268 ICVVDVKK---MEINHWSKRLHL------------GTSIALVEFCPTQRVVLTAS 307 (340)
Q Consensus 268 i~i~d~~~---~~~~~~~~~~~~------------~~~i~~~~~~~~~~~l~~~~ 307 (340)
|.+||+.. .+.+..+..+.. ...-..++++|||++|+++.
T Consensus 345 VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 345 VRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 99999853 234433322200 01358899999999998888
No 208
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.64 E-value=1.2e-12 Score=108.33 Aligned_cols=222 Identities=13% Similarity=0.023 Sum_probs=145.8
Q ss_pred CeeEEEEcCCCC-eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC
Q 019482 65 DPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS 143 (340)
Q Consensus 65 ~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 143 (340)
...+..|+|++. .+++...++.|..||..+++... +. ....+.++.|+++++++++. .+ .|.+||..+
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~--------~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~ 118 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA--------LPFMGSALAKISDSKQLIAS-DD-GLFLRDTAT 118 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE--------CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTT
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE--------CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCC
Confidence 456889999755 45566667889999988765422 11 22578999999999877654 34 499999887
Q ss_pred Cceeecccc---C-ccceeEEEecCCCCeEEEeeC------CCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcce
Q 019482 144 LRIILDEPK---A-HKSVLDMDFSLDSEFLATTST------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213 (340)
Q Consensus 144 ~~~~~~~~~---~-~~~i~~~~~~~~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (340)
++....... . ...+.+++++|+|+++++... .+.|..++ +++... +... ......++|+|+++.+
T Consensus 119 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~-~~~~~~i~~s~dg~~l- 193 (326)
T 2ghs_A 119 GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFAD-ISIPNSICFSPDGTTG- 193 (326)
T ss_dssp CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEE-ESSEEEEEECTTSCEE-
T ss_pred CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCC-CcccCCeEEcCCCCEE-
Confidence 764322111 1 236889999999987665542 24555555 454432 2221 2346789999999863
Q ss_pred EEEEEecCCcceEEEEECC--CC-cE-----EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc
Q 019482 214 LFCTVQRGDKALLAVYDIS--TW-NK-----IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285 (340)
Q Consensus 214 ~~~~~~~~~d~~i~i~d~~--~~-~~-----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 285 (340)
.++...++.|.+||+. ++ +. ...+.........++++++|++.++...++.|.+||. +++.+..+. .
T Consensus 194 ---yv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~-~ 268 (326)
T 2ghs_A 194 ---YFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE-V 268 (326)
T ss_dssp ---EEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE-C
T ss_pred ---EEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE-C
Confidence 2445567899999986 55 31 1111122345678999999988777766788999998 455554443 2
Q ss_pred ccccceeeEEEe-cCCeEEEEEec
Q 019482 286 HLGTSIALVEFC-PTQRVVLTASK 308 (340)
Q Consensus 286 ~~~~~i~~~~~~-~~~~~l~~~~~ 308 (340)
+ ...+.+++|+ ++++.|+.++.
T Consensus 269 ~-~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 269 P-GKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp S-CSBEEEEEEESTTSCEEEEEEB
T ss_pred C-CCCcEEEEEecCCCCEEEEEec
Confidence 2 3468999998 88776654443
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.64 E-value=9.5e-15 Score=121.86 Aligned_cols=177 Identities=10% Similarity=0.003 Sum_probs=133.1
Q ss_pred CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeee-----eccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEE
Q 019482 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN-----LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (340)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 139 (340)
.++.+++++...++++|+.++ +.+|+++..+.... +.. .....+.. |+.++| |+++|+++ .++.|++|
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~--~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTF--KWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCC--SEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccc--eEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 689999999999999999987 88899865441000 000 00112445 999999 88999998 88999999
Q ss_pred eCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEe
Q 019482 140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (340)
Q Consensus 140 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 219 (340)
|+.+.........+...+.++.+.+. .+++++.||.|.+||+.+++... + ...|++++|+|+|. +.
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~----~~~Vs~v~WSpkG~-------~v 177 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-L----AQNVTSFDVTNSQL-------AV 177 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-E----EESEEEEEECSSEE-------EE
T ss_pred EchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-c----cCCceEEEEcCCce-------EE
Confidence 99876655555555667888777654 38888999999999999877643 2 23699999999992 45
Q ss_pred cCCcceEEEEECCCCcE--Eeee------e---ccCCCeeEEEECCCCCEEEEe
Q 019482 220 RGDKALLAVYDISTWNK--IGHK------R---LLRKPASVLSISLDGKYLAMG 262 (340)
Q Consensus 220 ~~~d~~i~i~d~~~~~~--~~~~------~---~~~~~i~~~~~s~~~~~l~~~ 262 (340)
+..|+.+++|+...... ...+ . .+...|.++.|.+++.++++-
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 66789999999887764 4444 2 256789999999999988873
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.63 E-value=4.7e-13 Score=110.14 Aligned_cols=202 Identities=10% Similarity=0.079 Sum_probs=134.5
Q ss_pred CCCCeeEEEEcCC-CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC-------
Q 019482 62 SEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------- 133 (340)
Q Consensus 62 h~~~v~~~~~~~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------- 133 (340)
+...+.+++++++ |+++++...+ .|.+||.+ ++......... .......+.+++++++|+++++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~~~-~l~~~d~~-g~~~~~~~~~~--~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~ 144 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADMRL-GLLVVQTD-GTFEEIAKKDS--EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADY 144 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEETTT-EEEEEETT-SCEEECCSBCT--TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCC
T ss_pred CCCCCceEEEecCCCcEEEEECCC-CEEEEeCC-CCEEEEEeccC--CCccccCCcCEEECCCCCEEEEecCcccccccc
Confidence 4467999999999 7655554434 58999987 54322101100 00122457899999999877776554
Q ss_pred --------CcEEEEeCCCCceeeccccCccceeEEEec----CCCCeEEEe-eCCCeEEEEEcc-CCee-----EEEeec
Q 019482 134 --------GHLRIMHWPSLRIILDEPKAHKSVLDMDFS----LDSEFLATT-STDGSARIWKTE-DGVA-----WTFLTR 194 (340)
Q Consensus 134 --------g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~d~~v~iwd~~-~~~~-----~~~~~~ 194 (340)
+.|..|+.. ++.. .+.........++|+ |+++.++.+ ..++.|.+||.+ +++. ...+.
T Consensus 145 ~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~- 221 (314)
T 1pjx_A 145 TRSMQEKFGSIYCFTTD-GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP- 221 (314)
T ss_dssp CBTTSSSCEEEEEECTT-SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC-
T ss_pred cccccCCCCeEEEECCC-CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC-
Confidence 567777765 4432 222233356789999 999765544 567899999986 4442 12222
Q ss_pred CCC-CceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEe-eCCCcEEEEe
Q 019482 195 NSD-EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVD 272 (340)
Q Consensus 195 ~~~-~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d 272 (340)
... ..+..++++++|.. .++...++.|.+||.++++.+..+..+...+.+++++|+|+.|+++ ..++.|..|+
T Consensus 222 ~~~~~~p~~i~~d~~G~l-----~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 222 GTHEGGADGMDFDEDNNL-----LVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp CCSSCEEEEEEEBTTCCE-----EEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCCCCCceEECCCCCE-----EEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 111 45788999999974 3444457889999998777666666666788999999999955554 4567899999
Q ss_pred ccC
Q 019482 273 VKK 275 (340)
Q Consensus 273 ~~~ 275 (340)
+..
T Consensus 297 ~~~ 299 (314)
T 1pjx_A 297 WQR 299 (314)
T ss_dssp CSS
T ss_pred CCC
Confidence 875
No 211
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.62 E-value=3e-14 Score=129.93 Aligned_cols=240 Identities=9% Similarity=0.009 Sum_probs=154.7
Q ss_pred cCCCCeeEEEEcCCCCeEEEEe-----cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC-
Q 019482 61 ESEGDPMTIAVNPSGDDFVCST-----TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG- 134 (340)
Q Consensus 61 ~h~~~v~~~~~~~~~~~l~~~~-----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg- 134 (340)
+|...+..++|||||++||.+. ....|++||+.+++........ .....++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--------~k~~~~~Ws-Dg~~l~y~~~~~~ 196 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--------VKFSGISWL-GNEGFFYSSYDKP 196 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--------EESCCCEEE-TTTEEEEEESSCC
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--------ceeccEEEe-CCCEEEEEEecCc
Confidence 3555688999999999988543 2247999999988754322110 112467899 999888887764
Q ss_pred ------------cEEEEeCCCCce----eecccc-CccceeEEEecCCCCeEEEeeC----CCeEEEEEccCCe-eEEEe
Q 019482 135 ------------HLRIMHWPSLRI----ILDEPK-AHKSVLDMDFSLDSEFLATTST----DGSARIWKTEDGV-AWTFL 192 (340)
Q Consensus 135 ------------~i~~~d~~~~~~----~~~~~~-~~~~i~~~~~~~~~~~l~~~~~----d~~v~iwd~~~~~-~~~~~ 192 (340)
.|++|++.+... +..... +......+.|+|||++|+.... +..|+++|+.++. ....+
T Consensus 197 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 197 DGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp C-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 399999887542 222222 2334678999999998765432 3589999997763 34444
Q ss_pred ecCCCCceeeEEEccCCCcceEEEEEec--CCcceEEEEECCCCcE--EeeeeccCCCeeEEEECCCCCEEEEeeCCC--
Q 019482 193 TRNSDEKIELCRFSKDGTKPFLFCTVQR--GDKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDG-- 266 (340)
Q Consensus 193 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-- 266 (340)
..... ..... +++++..+++ .+. .....|..+|+.++.. ...+..+...+. .|++++++|+....++
T Consensus 277 ~~~~~-~~~~~-~~~~g~~l~~---~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~ 349 (693)
T 3iuj_A 277 QGDLD-ADVSL-VDNKGSTLYL---LTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDAT 349 (693)
T ss_dssp ECSSS-SCEEE-EEEETTEEEE---EECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTE
T ss_pred eCCCC-ceEEE-EeccCCEEEE---EECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCe
Confidence 43332 33333 6777776432 222 2247899999987654 234444554444 8999998888776544
Q ss_pred -cEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC----CcEEEEEec
Q 019482 267 -DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE----WGAMITKLT 318 (340)
Q Consensus 267 -~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iw~~~ 318 (340)
.|++||+..+.... +.... ...+..+.+++++..|+....+ +.++.|++.
T Consensus 350 ~~l~~~d~~g~~~~~-l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~ 404 (693)
T 3iuj_A 350 ARVEQFDYEGKRVRE-VALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPK 404 (693)
T ss_dssp EEEEEECTTSCEEEE-ECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred eEEEEEECCCCeeEE-eecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence 68999988654433 32222 3467778888888766655444 667777764
No 212
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.62 E-value=4.8e-13 Score=109.69 Aligned_cols=229 Identities=10% Similarity=-0.031 Sum_probs=148.4
Q ss_pred EecCCCCeeEEEEcCCCC-eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEE
Q 019482 59 FDESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR 137 (340)
Q Consensus 59 ~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 137 (340)
+..+........|+|+|+ .+++...++.|..|+.. ++. ..+.. ....+..++++++|+++++...++.|.
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~~~-------~~~~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVLLD-------ATAFTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEEEE-------SCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEEeC-------CCCccceeeECCCCCEEEEECCCCEEE
Confidence 444556678999999998 55666677889999874 332 22211 335688999999998777666667899
Q ss_pred EEeCCCCceeeccccC----ccceeEEEecCCCCeEEE----eeC-------------CCeEEEEEccCCeeEEEeecCC
Q 019482 138 IMHWPSLRIILDEPKA----HKSVLDMDFSLDSEFLAT----TST-------------DGSARIWKTEDGVAWTFLTRNS 196 (340)
Q Consensus 138 ~~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~----~~~-------------d~~v~iwd~~~~~~~~~~~~~~ 196 (340)
.|+.. ++........ ...+..++++|+|+++++ |.. .+.|..+|..+++..... ..
T Consensus 111 ~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~ 187 (305)
T 3dr2_A 111 RSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DL 187 (305)
T ss_dssp EECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EE
T ss_pred EECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cC
Confidence 99975 4432211111 124678999999998886 332 256777887666554332 22
Q ss_pred CCceeeEEEccCCCcceEEEEEecCC-----cceEEEEECCCCcEE--eee-eccCCCeeEEEECCCCCEEEEeeCCCcE
Q 019482 197 DEKIELCRFSKDGTKPFLFCTVQRGD-----KALLAVYDISTWNKI--GHK-RLLRKPASVLSISLDGKYLAMGSKDGDI 268 (340)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~--~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i 268 (340)
.....++|+|+++.++ ++... .+.|.+||+...... ..+ .........++++++|++.+ ++.+ .|
T Consensus 188 -~~p~gl~~spdg~~ly----v~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~-gv 260 (305)
T 3dr2_A 188 -DHPNGLAFSPDEQTLY----VSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGT-GV 260 (305)
T ss_dssp -SSEEEEEECTTSSEEE----EEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSS-EE
T ss_pred -CCCcceEEcCCCCEEE----EEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCC-cE
Confidence 3467899999998632 22222 378999998765411 111 11233456789999999544 4444 49
Q ss_pred EEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCC
Q 019482 269 CVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW 310 (340)
Q Consensus 269 ~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 310 (340)
.+|+.. ++.+..+.. . ..+..++|+|+++.|..++.++
T Consensus 261 ~~~~~~-g~~~~~~~~-~--~~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 261 CVFDSD-GQLLGHIPT-P--GTASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp EEECTT-SCEEEEEEC-S--SCCCEEEECTTSCEEEEEETTE
T ss_pred EEECCC-CCEEEEEEC-C--CceeEEEEeCCCCEEEEEcCCe
Confidence 999984 555444432 2 2588999999998887777663
No 213
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.61 E-value=3.3e-14 Score=118.62 Aligned_cols=175 Identities=15% Similarity=0.068 Sum_probs=130.3
Q ss_pred CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc----------eeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEE
Q 019482 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR----------IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK 182 (340)
Q Consensus 113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd 182 (340)
.++..+++++...++++|+.++ +.+|++.... .......... |+.++| |+++|+++ .++.|++||
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 3688999999999999999875 6669875433 1111223445 999999 89999998 789999999
Q ss_pred ccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEe
Q 019482 183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG 262 (340)
Q Consensus 183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 262 (340)
+++......... +...+.++.+.+.. ++....||.|.+||+.++.... +...|++++|||+| ++.|
T Consensus 113 v~sl~~~~~~~~-~~~~v~~i~~~~p~-------~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg 178 (388)
T 1xip_A 113 LEELSEFRTVTS-FEKPVFQLKNVNNT-------LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVL 178 (388)
T ss_dssp SSSTTCEEEEEE-CSSCEEEEEECSSE-------EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEE
T ss_pred chhhhccCccce-eecceeeEEecCCC-------EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEE
Confidence 987665444433 33457777766542 4666789999999999887643 34589999999999 6788
Q ss_pred eCCCcEEEEeccCceE--eeccc-----c---cccccceeeEEEecCCeEEEEEe
Q 019482 263 SKDGDICVVDVKKMEI--NHWSK-----R---LHLGTSIALVEFCPTQRVVLTAS 307 (340)
Q Consensus 263 ~~dg~i~i~d~~~~~~--~~~~~-----~---~~~~~~i~~~~~~~~~~~l~~~~ 307 (340)
..||.+++|+...++. ...+. . .| ...|.++.|.+++.++++-+
T Consensus 179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~-~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVE-EYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTT-TSEEEEEEESSSSEEEEEEE
T ss_pred EcCCcEEEEcCCCccccccceecCCcccccccCC-CeeEEEEEEecCCeEEEEEc
Confidence 9999999999888774 33331 1 23 46899999999999888743
No 214
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.61 E-value=1.3e-12 Score=108.94 Aligned_cols=246 Identities=9% Similarity=-0.006 Sum_probs=155.4
Q ss_pred CCeeEEEEcCCCCeEEEEec--CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-----CCcE
Q 019482 64 GDPMTIAVNPSGDDFVCSTT--NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----DGHL 136 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i 136 (340)
..+..++++|+|+.+++... ++.++||.+.+++. ..+.........+...+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 67899999999998888642 34366777654432 2121110111134568999999999876665433 5789
Q ss_pred EEEeCCCCceeeccccC------ccceeEEEecCCCCe-EEEee---CCCeEEEEEccCCeeEEEeecCC----------
Q 019482 137 RIMHWPSLRIILDEPKA------HKSVLDMDFSLDSEF-LATTS---TDGSARIWKTEDGVAWTFLTRNS---------- 196 (340)
Q Consensus 137 ~~~d~~~~~~~~~~~~~------~~~i~~~~~~~~~~~-l~~~~---~d~~v~iwd~~~~~~~~~~~~~~---------- 196 (340)
.+||+.+++.+..+... ...+..++++|++.. +++-. .++.|.+||+.+++....+..+.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 99999988755443221 124688999986544 45544 57899999998877655442210
Q ss_pred ------------------CCceeeEEEccCCCcceEEEEEecCCcceEEEEECC---CCc-----EEe--eeeccCCCee
Q 019482 197 ------------------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS---TWN-----KIG--HKRLLRKPAS 248 (340)
Q Consensus 197 ------------------~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~---~~~-----~~~--~~~~~~~~i~ 248 (340)
...+..++|+|+++.++ ++......+..++.. .+. ... ....+.....
T Consensus 176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pd 251 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLY----LSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICD 251 (343)
T ss_dssp ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEE----EEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCS
T ss_pred ECCEEEEeccCCCceeceecccceeEeccCCCEEE----EEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCc
Confidence 01257799999998632 222333456555532 111 000 1112233556
Q ss_pred EEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEE
Q 019482 249 VLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMIT 315 (340)
Q Consensus 249 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 315 (340)
.++++++|+++++...++.|.+||..+++......... .....+++|.++++++++.+..+.+.+|
T Consensus 252 gia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~-~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 252 GISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEK-LSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp CEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGG-GSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred eEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCc-eecCCeeEECCCCcEEEEeCcccccccc
Confidence 79999999999998889999999985565433322111 3468899999999988887766555433
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.57 E-value=5.1e-12 Score=103.14 Aligned_cols=228 Identities=10% Similarity=0.005 Sum_probs=142.2
Q ss_pred EeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEE
Q 019482 9 CGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCK 88 (340)
Q Consensus 9 ~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~ 88 (340)
+..|+++.. .++++.. ..+.|..|+.+ +... ..+ .....+.+++++|+|+++++ .. ..|.
T Consensus 17 gp~w~~~~~--~l~~~d~------~~~~i~~~d~~--~~~~-------~~~-~~~~~~~~i~~~~dG~l~v~-~~-~~l~ 76 (297)
T 3g4e_A 17 SPVWEEVSN--SLLFVDI------PAKKVCRWDSF--TKQV-------QRV-TMDAPVSSVALRQSGGYVAT-IG-TKFC 76 (297)
T ss_dssp EEEEETTTT--EEEEEET------TTTEEEEEETT--TCCE-------EEE-ECSSCEEEEEEBTTSSEEEE-ET-TEEE
T ss_pred CCeEECCCC--EEEEEEC------CCCEEEEEECC--CCcE-------EEE-eCCCceEEEEECCCCCEEEE-EC-CeEE
Confidence 567887433 4555333 23446555543 2211 111 23567999999999995554 44 4599
Q ss_pred EEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC---------CCcEEEEeCCCCceeeccccCccceeE
Q 019482 89 LFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---------DGHLRIMHWPSLRIILDEPKAHKSVLD 159 (340)
Q Consensus 89 iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~~~d~~~~~~~~~~~~~~~~i~~ 159 (340)
+||.++++......... ......+.+++++|+|+++++... ...-.+|.+..................
T Consensus 77 ~~d~~~g~~~~~~~~~~---~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~png 153 (297)
T 3g4e_A 77 ALNWKEQSAVVLATVDN---DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNG 153 (297)
T ss_dssp EEETTTTEEEEEEECCT---TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEE
T ss_pred EEECCCCcEEEEEecCC---CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccc
Confidence 99988766432221110 012245789999999986665422 123345544432222223333345678
Q ss_pred EEecCCCCeEE-EeeCCCeEEEEEc--cCCeeE--EEee--cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC
Q 019482 160 MDFSLDSEFLA-TTSTDGSARIWKT--EDGVAW--TFLT--RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (340)
Q Consensus 160 ~~~~~~~~~l~-~~~~d~~v~iwd~--~~~~~~--~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~ 232 (340)
++|+|+++.|+ +.+.++.|.+|++ .++... ..+. ......+..++++++|.. .++....+.|..||..
T Consensus 154 i~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~l-----wva~~~~~~v~~~d~~ 228 (297)
T 3g4e_A 154 LDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKL-----WVACYNGGRVIRLDPV 228 (297)
T ss_dssp EEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCE-----EEEEETTTEEEEECTT
T ss_pred eEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCE-----EEEEcCCCEEEEEcCC
Confidence 99999998664 4556789999997 445431 1121 112245788999999974 3444456789999999
Q ss_pred CCcEEeeeeccCCCeeEEEEC-CCCCEEEEeeC
Q 019482 233 TWNKIGHKRLLRKPASVLSIS-LDGKYLAMGSK 264 (340)
Q Consensus 233 ~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~ 264 (340)
+++.+..+..+...+++++|. |+++.|++++.
T Consensus 229 tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 229 TGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 999888888777789999998 88887776654
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.57 E-value=9.7e-12 Score=105.96 Aligned_cols=238 Identities=11% Similarity=-0.005 Sum_probs=150.8
Q ss_pred eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCC
Q 019482 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG 85 (340)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~ 85 (340)
....++|.+ +..++++.. .++.|+.|+.+ .......... ..... ++|+|+++.|+++..++
T Consensus 132 ~P~~la~d~---~g~lyv~d~------~~~~I~~id~~--------~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~ 192 (409)
T 3hrp_A 132 YMWGIAAVG---NNTVLAYQR------DDPRVRLISVD--------DNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEG 192 (409)
T ss_dssp CEEEEEECS---TTEEEEEET------TTTEEEEEETT--------TTEEEEEEET-CCBCB-CEECTTSSEEEEEBSST
T ss_pred CceEEEEeC---CCCEEEEec------CCCcEEEEECC--------CCEEEEeecc-CCCCc-eeEecCCCcEEEEecCC
Confidence 456788886 334555333 23457666654 2222222333 23344 99999999998888766
Q ss_pred --CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeec----cccCccce-e
Q 019482 86 --GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD----EPKAHKSV-L 158 (340)
Q Consensus 86 --~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~----~~~~~~~i-~ 158 (340)
.|.+++.........+ .... ......+.+++++|++..|+.+..++.|+.||..++..... ..+....- .
T Consensus 193 ~~~I~~~d~~~~~~~~~~-g~~~--~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~ 269 (409)
T 3hrp_A 193 THTVYVYMKASGWAPTRI-GQLG--STFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPG 269 (409)
T ss_dssp TCEEEEEEGGGTTCEEEE-EECC--TTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSC
T ss_pred CceEEEEEcCCCceeEEe-eecc--chhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCcc
Confidence 6777777654332222 0000 01235568899999544555567788999999887654322 21221111 3
Q ss_pred -EEEecCC-CCeEEEeeCCCeEEEEEccCCeeEEEeecCC--------------CCceeeEEEccCCCcceEEEEEecC-
Q 019482 159 -DMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNS--------------DEKIELCRFSKDGTKPFLFCTVQRG- 221 (340)
Q Consensus 159 -~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~~~~~~~~~~~- 221 (340)
.++|+|+ +.++++-..++.|+.|+.... +..+.... -.....++++|+|.. .++..
T Consensus 270 ~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~l-----yvad~~ 342 (409)
T 3hrp_A 270 PYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNF-----YIVDGF 342 (409)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCE-----EEEETT
T ss_pred ccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCE-----EEEeCC
Confidence 8999995 666666667789999987643 22332221 134788999999984 46666
Q ss_pred CcceEEEEECCCCcEEeeeecc---------------CCCeeEEEECCCCCEEEEeeCCCcEEEEec
Q 019482 222 DKALLAVYDISTWNKIGHKRLL---------------RKPASVLSISLDGKYLAMGSKDGDICVVDV 273 (340)
Q Consensus 222 ~d~~i~i~d~~~~~~~~~~~~~---------------~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 273 (340)
.++.|+.||+.++... .+..+ -.....++++|+|.++++-..++.|+.+++
T Consensus 343 ~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 343 KGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 7899999998777643 33332 135788999999888887778888888775
No 217
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.56 E-value=1.5e-11 Score=100.70 Aligned_cols=232 Identities=13% Similarity=0.058 Sum_probs=146.8
Q ss_pred eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCC
Q 019482 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (340)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~ 86 (340)
.....|.++.. .++.++. ..+.|..|+. .+. . ..+..+...+..++++++|+++++...++.
T Consensus 47 ~egp~~~~~g~--~l~~~d~------~~~~i~~~~~--~g~-~-------~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~ 108 (305)
T 3dr2_A 47 SEGPAWWEAQR--TLVWSDL------VGRRVLGWRE--DGT-V-------DVLLDATAFTNGNAVDAQQRLVHCEHGRRA 108 (305)
T ss_dssp EEEEEEEGGGT--EEEEEET------TTTEEEEEET--TSC-E-------EEEEESCSCEEEEEECTTSCEEEEETTTTE
T ss_pred ccCCeEeCCCC--EEEEEEC------CCCEEEEEeC--CCC-E-------EEEeCCCCccceeeECCCCCEEEEECCCCE
Confidence 35678888432 3555443 3344666643 221 1 223445677999999999997666556677
Q ss_pred EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEE----ccC-------------CCcEEEEeCCCCceeec
Q 019482 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA----GGV-------------DGHLRIMHWPSLRIILD 149 (340)
Q Consensus 87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~~~d~~~~~~~~~ 149 (340)
|.+|+.+ ++.. .+.... . ......+.++++.|+|++.++ |.. .+.|..+|..+++....
T Consensus 109 v~~~~~~-g~~~-~~~~~~-~-~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~ 184 (305)
T 3dr2_A 109 ITRSDAD-GQAH-LLVGRY-A-GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM 184 (305)
T ss_dssp EEEECTT-SCEE-EEECEE-T-TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE
T ss_pred EEEECCC-CCEE-EEEecc-C-CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE
Confidence 9999875 3322 111110 0 011245678999999998876 432 25677788766654432
Q ss_pred cccCccceeEEEecCCCCeEEEeeCC------CeEEEEEccCCee--EEEeecCCCCceeeEEEccCCCcceEEEEEecC
Q 019482 150 EPKAHKSVLDMDFSLDSEFLATTSTD------GSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG 221 (340)
Q Consensus 150 ~~~~~~~i~~~~~~~~~~~l~~~~~d------~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 221 (340)
. .......++|+||++.|+.+... +.|++|++..+.. ...+.......+..++++++|. +..+.
T Consensus 185 ~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~------lwv~~ 256 (305)
T 3dr2_A 185 A--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW------LWSSS 256 (305)
T ss_dssp E--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC------EEECC
T ss_pred e--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC------EEEec
Confidence 2 33456789999999987777654 6899999876541 1112111234467899999998 34444
Q ss_pred CcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEe
Q 019482 222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD 272 (340)
Q Consensus 222 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 272 (340)
.+ .|.+||. .++.+..+.... .+.+++|+|+++.|++++.++ +..++
T Consensus 257 ~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 257 GT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp SS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred CC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 44 4999998 466666666555 588999999999888887754 44433
No 218
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.54 E-value=1e-11 Score=103.27 Aligned_cols=218 Identities=13% Similarity=0.117 Sum_probs=144.7
Q ss_pred CeeEEEEcCCCCeEEEEec--CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482 65 DPMTIAVNPSGDDFVCSTT--NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (340)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 142 (340)
....++|+|||++++++.. ++.|.++|+.+.+....+... + + ...+....+.+++.+.||.+.+.++.
T Consensus 138 ~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~--------g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~ 207 (386)
T 3sjl_D 138 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP--------D-C-YHIFPTAPDTFFMHCRDGSLAKVAFG 207 (386)
T ss_dssp CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC--------S-E-EEEEEEETTEEEEEETTSCEEEEECC
T ss_pred CCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC--------C-c-ceeecCCCceeEEECCCCCEEEEECC
Confidence 5778999999999988864 578999999999877666321 1 1 22232244566677778888888887
Q ss_pred C-CceeeccccC----cccee-EEEec-CCCCeEEEeeCCCeEEEEEccCCe--eEEEee---------cCCCCceeeEE
Q 019482 143 S-LRIILDEPKA----HKSVL-DMDFS-LDSEFLATTSTDGSARIWKTEDGV--AWTFLT---------RNSDEKIELCR 204 (340)
Q Consensus 143 ~-~~~~~~~~~~----~~~i~-~~~~~-~~~~~l~~~~~d~~v~iwd~~~~~--~~~~~~---------~~~~~~v~~~~ 204 (340)
+ ++........ ..++. ...|. ++|++++ .+.+|.|++.|+..+. .+..+. .-..+....++
T Consensus 208 ~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a 286 (386)
T 3sjl_D 208 TEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA 286 (386)
T ss_dssp SSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEE
T ss_pred CCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceee
Confidence 5 4432211111 12222 24664 5776555 5558999999997654 222221 00112345688
Q ss_pred EccCCCcceEEEEEec-------CCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCC-EEEEee-CCCcEEEEeccC
Q 019482 205 FSKDGTKPFLFCTVQR-------GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK-YLAMGS-KDGDICVVDVKK 275 (340)
Q Consensus 205 ~~~~~~~~~~~~~~~~-------~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~i~d~~~ 275 (340)
++++++.+|.. .-. ...+.|.++|+.+++.+..+.... .+..+.++||++ +|++.. .++.|.++|..+
T Consensus 287 ~~~~~~~lyV~--~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t 363 (386)
T 3sjl_D 287 YHRALDRIYLL--VDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSINVSQDEKPLLYALSTGDKTLYIHDAES 363 (386)
T ss_dssp EETTTTEEEEE--EEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECSSSSCEEEEEETTTTEEEEEETTT
T ss_pred ECCCCCeEEEE--eccccccccCCCCCEEEEEECCCCeEEEEEECCC-CcceEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 89999875432 111 124689999999999988776543 678999999997 666654 489999999999
Q ss_pred ceEeecccccccccceeeEEEecC
Q 019482 276 MEINHWSKRLHLGTSIALVEFCPT 299 (340)
Q Consensus 276 ~~~~~~~~~~~~~~~i~~~~~~~~ 299 (340)
++.+..+... ..-+.+.+++|
T Consensus 364 ~k~~~~i~~~---~~p~~l~~s~d 384 (386)
T 3sjl_D 364 GEELRSVNQL---GHGPQVITTAD 384 (386)
T ss_dssp CCEEEEECCC---CSSCCEEEECC
T ss_pred CcEEEEecCC---CCCceeEECCc
Confidence 9998877543 34567777776
No 219
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.54 E-value=5.9e-11 Score=99.73 Aligned_cols=201 Identities=12% Similarity=0.029 Sum_probs=134.7
Q ss_pred CeeEEEEcCCCCeEEEEec--CCCEEEEEecCceeeee-eccccCCCCCCCCCeEEEEEecCC-CeEEEccCCCcEEEEe
Q 019482 65 DPMTIAVNPSGDDFVCSTT--NGGCKLFEVYGGATDIN-LLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMH 140 (340)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~--d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d 140 (340)
....++|+|||++|+++.. ++.|.++| .+++.... +.. . .++.+.|++ +.+++.+.||.+.++|
T Consensus 126 ~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~--------~---~~~~~~~~~~~~~~~~~~dg~~~~vd 193 (373)
T 2mad_H 126 YSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS--------P---TCYHIHPGAPSTFYLLCAQGGLAKTD 193 (373)
T ss_pred CccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC--------C---ceEEEEeCCCceEEEEcCCCCEEEEE
Confidence 4668999999999998874 47799999 88876544 311 1 124555655 3556667899999999
Q ss_pred CCCCceeeccc-----cCccc-eeEEEecCCCCeEEEeeCCCeEEEEEccCCe--eEEEeecC---------CCCceeeE
Q 019482 141 WPSLRIILDEP-----KAHKS-VLDMDFSLDSEFLATTSTDGSARIWKTEDGV--AWTFLTRN---------SDEKIELC 203 (340)
Q Consensus 141 ~~~~~~~~~~~-----~~~~~-i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~--~~~~~~~~---------~~~~v~~~ 203 (340)
. +++...... ....+ .....+.+++..++..+..+.+.+.|+..+. .+..+... .......+
T Consensus 194 ~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~ 272 (373)
T 2mad_H 194 H-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQV 272 (373)
T ss_pred C-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeE
Confidence 9 776552211 11122 2335567766555555577899999987543 22222110 01123447
Q ss_pred EEccCCCcceEEEEEecC-------CcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCC-EEEEee-CCCcEEEEecc
Q 019482 204 RFSKDGTKPFLFCTVQRG-------DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK-YLAMGS-KDGDICVVDVK 274 (340)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~-------~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~i~d~~ 274 (340)
.++|+++.+|.. .... ..+.|.++|+.+++.+..+... .....+.|+|||+ +++++. .++.|.++|+.
T Consensus 273 ~~s~d~~~lyV~--~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 273 AYLKSSDGIYLL--TSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred EECCCCCEEEEE--eccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 889998874321 1111 2468999999999988877543 3578999999999 777777 48999999999
Q ss_pred CceEeec
Q 019482 275 KMEINHW 281 (340)
Q Consensus 275 ~~~~~~~ 281 (340)
+++.+..
T Consensus 350 t~~vv~~ 356 (373)
T 2mad_H 350 AGDQDQS 356 (373)
T ss_pred CCCEEee
Confidence 9998876
No 220
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.51 E-value=3e-12 Score=106.55 Aligned_cols=255 Identities=7% Similarity=-0.144 Sum_probs=159.6
Q ss_pred ceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe----------cCCCEEEEEecCceeeeeecccc
Q 019482 36 VLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLAKK 105 (340)
Q Consensus 36 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~~ 105 (340)
.+.+++.+ +.....++.....+ .+.++||+++++++. .++.|.+||+.+.+....+....
T Consensus 47 ~vsvID~~--------t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~ 116 (368)
T 1mda_H 47 ENWVSCAG--------CGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPD 116 (368)
T ss_dssp EEEEEETT--------TTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETT
T ss_pred eEEEEECC--------CCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCC
Confidence 45565544 33444445444445 799999999998886 36789999999998877664320
Q ss_pred CCCCCCCCCeEEEEEecCCCeEEEccC--CCcEEE--EeCCCCceeeccccCccceeEEEecCCCC-eEEEeeCCCeEEE
Q 019482 106 MPPLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRI--MHWPSLRIILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARI 180 (340)
Q Consensus 106 ~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~--~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~i 180 (340)
...+........++++|||++++++.. +..+.+ +|+.+ +..+.-. + ++.+.|+++ .+++.+.|+.+.+
T Consensus 117 ~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~---~~~~~p~g~~~~~~~~~dg~~~~ 189 (368)
T 1mda_H 117 APRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-S---CFHIHPGAAATHYLGSCPASLAA 189 (368)
T ss_dssp SCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-S---CCCCEEEETTEEECCCCTTSCEE
T ss_pred ccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-C---ceEEccCCCeEEEEEcCCCCEEE
Confidence 000001123467999999999998864 456888 99876 2222211 1 122345443 3455667888888
Q ss_pred EEccC-----CeeEEE----eecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc--EEeeeecc------
Q 019482 181 WKTED-----GVAWTF----LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLL------ 243 (340)
Q Consensus 181 wd~~~-----~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~------ 243 (340)
.|+++ ++.... +.. ...+. . ++++.. ++..+. +.+.+.|+.... .+..+...
T Consensus 190 vd~~~~~~~~~~v~~~~t~~i~v-g~~P~---~-~~~~~~-----~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~ 258 (368)
T 1mda_H 190 SDLAAAPAAAGIVGAQCTGAQNC-SSQAA---Q-ANYPGM-----LVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKA 258 (368)
T ss_dssp EECCSSCCCCEECCCCSCTTSCB-CSCCE---E-ETTTTE-----EEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHH
T ss_pred EECccccccCCeEEEEeeeeeeC-CCCcc---c-cccCCE-----EEEEcC-CEEEEEECCCCcceEEEEEEeccccccc
Confidence 88876 433211 111 11222 3 555554 233334 889999987543 22211110
Q ss_pred ----CCCeeEEEECCCCCEEEEeeC-C--------CcEEEEeccCceEeecccccccccceeeEEEecCCe-EEEEEe-c
Q 019482 244 ----RKPASVLSISLDGKYLAMGSK-D--------GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTAS-K 308 (340)
Q Consensus 244 ----~~~i~~~~~s~~~~~l~~~~~-d--------g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~ 308 (340)
......+.++|+++.++++.. + +.+.++|+.+.+.+..+..+ .....++|+|||+ .+++.. .
T Consensus 259 ~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg---~~p~gi~~s~Dg~~l~va~~~~ 335 (368)
T 1mda_H 259 DNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAG 335 (368)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETT
T ss_pred cccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC---CCcceEEECCCCCEEEEEccCC
Confidence 011222689999998887643 2 35679999999998877543 3689999999997 566666 5
Q ss_pred CCcEEEEEecCCC
Q 019482 309 EWGAMITKLTVPA 321 (340)
Q Consensus 309 dg~i~iw~~~~~~ 321 (340)
++.|.++|+...+
T Consensus 336 ~~~VsVID~~t~k 348 (368)
T 1mda_H 336 TEVLDIYDAASDQ 348 (368)
T ss_dssp TTEEEEEESSSCE
T ss_pred CCeEEEEECCCCc
Confidence 8999999996544
No 221
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.47 E-value=1.5e-10 Score=95.67 Aligned_cols=188 Identities=12% Similarity=0.012 Sum_probs=122.3
Q ss_pred CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC------CCcE
Q 019482 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV------DGHL 136 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i 136 (340)
...+.+++|+|+|+++++. .++ |.+||..+++... +.... .......+.+++++|+|+++++... .+.|
T Consensus 89 ~~~v~~i~~~~dg~l~v~~-~~g-l~~~d~~~g~~~~-~~~~~--~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l 163 (326)
T 2ghs_A 89 PFMGSALAKISDSKQLIAS-DDG-LFLRDTATGVLTL-HAELE--SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSI 163 (326)
T ss_dssp SSCEEEEEEEETTEEEEEE-TTE-EEEEETTTCCEEE-EECSS--TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEE
T ss_pred CCcceEEEEeCCCeEEEEE-CCC-EEEEECCCCcEEE-EeeCC--CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEE
Confidence 4579999999999877654 455 9999987766432 21110 0011246889999999987665432 2455
Q ss_pred EEEeCCCCceeeccccCccceeEEEecCCCCeEEEe-eCCCeEEEEEcc--CC-ee-----EEEeecCCCCceeeEEEcc
Q 019482 137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT-STDGSARIWKTE--DG-VA-----WTFLTRNSDEKIELCRFSK 207 (340)
Q Consensus 137 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~v~iwd~~--~~-~~-----~~~~~~~~~~~v~~~~~~~ 207 (340)
..++ +++.. .+.........++|+|+++.++.+ +.++.|.+||+. ++ +. ...+. .....+..+++++
T Consensus 164 ~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~-~~~~~p~gi~~d~ 239 (326)
T 2ghs_A 164 YHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST-GIKGGMDGSVCDA 239 (326)
T ss_dssp EEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT-TSSSEEEEEEECT
T ss_pred EEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECC-CCCCCCCeeEECC
Confidence 5555 44432 222223356789999999876554 457899999986 55 31 11221 1234577899999
Q ss_pred CCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEEC-CCCCEEEEeeCC
Q 019482 208 DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS-LDGKYLAMGSKD 265 (340)
Q Consensus 208 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~d 265 (340)
+|.. .++...++.|..||. +++.+..+......+++++|+ |+++.|++++..
T Consensus 240 ~G~l-----wva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 240 EGHI-----WNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp TSCE-----EEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred CCCE-----EEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 9974 333334578999998 567666676666679999998 888877665543
No 222
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.46 E-value=1.4e-11 Score=112.47 Aligned_cols=251 Identities=11% Similarity=0.061 Sum_probs=149.6
Q ss_pred ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (340)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 84 (340)
..+..++|+| ++..+|++...+ +.....|++++++.. .. ....+.+. ....++|+ ||+.|+.++.+
T Consensus 129 ~~l~~~~~Sp---Dg~~lAy~~~~~-G~~~~~i~v~dl~tg--~~-----~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~ 194 (693)
T 3iuj_A 129 TALDQLSFSR---DGRILAYSLSLA-GSDWREIHLMDVESK--QP-----LETPLKDV--KFSGISWL-GNEGFFYSSYD 194 (693)
T ss_dssp CEEEEEEECT---TSSEEEEEEECS-SCCEEEEEEEETTTC--SE-----EEEEEEEE--ESCCCEEE-TTTEEEEEESS
T ss_pred EEEEEEEECC---CCCEEEEEEecC-CCceEEEEEEECCCC--CC-----CccccCCc--eeccEEEe-CCCEEEEEEec
Confidence 4677889999 445666544321 122355777776522 11 11112211 13568899 99999988877
Q ss_pred CC-------------EEEEEecCceeeeeeccccCCCCC-CCCCeEEEEEecCCCeEEEcc----CCCcEEEEeCCCCc-
Q 019482 85 GG-------------CKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSVDGSRFAAGG----VDGHLRIMHWPSLR- 145 (340)
Q Consensus 85 ~~-------------i~iw~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~----~dg~i~~~d~~~~~- 145 (340)
.. |++|++.+........... .. +......+.|+|||++|+... .+..|+++|+.++.
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~---~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~ 271 (693)
T 3iuj_A 195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA---IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA 271 (693)
T ss_dssp CCC-------CCCCEEEEEETTSCGGGCEEEESC---SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC
T ss_pred CcccccccccCCCcEEEEEECCCCcccceEEEec---CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC
Confidence 43 8899987654322222111 01 233467899999999886543 23589999997763
Q ss_pred eeeccccCccceeEEEecCCCCeEE-EeeCC---CeEEEEEccCCee--EEEeecCCCCceeeEEEccCCCcceEEEEEe
Q 019482 146 IILDEPKAHKSVLDMDFSLDSEFLA-TTSTD---GSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (340)
Q Consensus 146 ~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d---~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 219 (340)
....+..+....... |++++..|+ .+..+ +.|..+|+.++.. ...+..+... +. .|+++++.+++ ...
T Consensus 272 ~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-~~--~~s~~g~~lv~--~~~ 345 (693)
T 3iuj_A 272 PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-VL--TVHSGSGYLFA--EYM 345 (693)
T ss_dssp CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS-CE--EEEEETTEEEE--EEE
T ss_pred ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC-EE--EEEEECCEEEE--EEE
Confidence 333444444444444 666666554 44433 6799999987654 3445444433 33 89999987321 112
Q ss_pred cCCcceEEEEECCCCcEEeeeec-cCCCeeEEEECCCCCEEEEeeCC----CcEEEEeccCceEe
Q 019482 220 RGDKALLAVYDISTWNKIGHKRL-LRKPASVLSISLDGKYLAMGSKD----GDICVVDVKKMEIN 279 (340)
Q Consensus 220 ~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~ 279 (340)
......|++||+..+. ...+.. ....+..+.++|+++.++....+ +.++.||+.+++..
T Consensus 346 ~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 346 VDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp ETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred ECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 2223479999988543 334332 33456777888888877766544 78999999877643
No 223
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.46 E-value=9.2e-11 Score=106.50 Aligned_cols=221 Identities=10% Similarity=0.072 Sum_probs=144.3
Q ss_pred CCCEEEEEecCceeeeeeccccCCCC------------------------CCCCCeEEEEEecCCCeEEEccCCCc----
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPPL------------------------QDAGPQKCLSFSVDGSRFAAGGVDGH---- 135 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~------------------------~~~~~v~~~~~~~~~~~l~~~~~dg~---- 135 (340)
++.|+.||..+++....+......+. .+......++++|+..+++.+..++.
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~ 261 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP 261 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence 68899999999987766542110000 01111235788998888888887763
Q ss_pred ---------------EEEEeCCCCceeeccccCcc---------ceeEEEecCCCC---eEEEeeCCCeEEEEEccCCee
Q 019482 136 ---------------LRIMHWPSLRIILDEPKAHK---------SVLDMDFSLDSE---FLATTSTDGSARIWKTEDGVA 188 (340)
Q Consensus 136 ---------------i~~~d~~~~~~~~~~~~~~~---------~i~~~~~~~~~~---~l~~~~~d~~v~iwd~~~~~~ 188 (340)
|..+|.++++.+..+...+. +........+|+ .++.++.+|.++++|.++|+.
T Consensus 262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 341 (689)
T 1yiq_A 262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL 341 (689)
T ss_dssp HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence 99999999998876654211 122222223565 788999999999999999998
Q ss_pred EEEeecCCCC--------------------------------------ceeeEEEccCCCcceEEEEE------------
Q 019482 189 WTFLTRNSDE--------------------------------------KIELCRFSKDGTKPFLFCTV------------ 218 (340)
Q Consensus 189 ~~~~~~~~~~--------------------------------------~v~~~~~~~~~~~~~~~~~~------------ 218 (340)
+......... .-..++++|+...+++...-
T Consensus 342 l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~ 421 (689)
T 1yiq_A 342 LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP 421 (689)
T ss_dssp EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC
T ss_pred eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc
Confidence 7443211100 01136788887754321100
Q ss_pred ----------ec------------------CCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEE
Q 019482 219 ----------QR------------------GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV 270 (340)
Q Consensus 219 ----------~~------------------~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 270 (340)
.+ ..++.|..||+.+++.+-....+. +...-.+...+.++++++.||.++.
T Consensus 422 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a 500 (689)
T 1yiq_A 422 KRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIA 500 (689)
T ss_dssp CCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEE
T ss_pred cccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEE
Confidence 00 014889999999999876665543 3333356667889999999999999
Q ss_pred EeccCceEeecccccccccceeeEEEecCCeE-EEEE
Q 019482 271 VDVKKMEINHWSKRLHLGTSIALVEFCPTQRV-VLTA 306 (340)
Q Consensus 271 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~ 306 (340)
||.++++.+..+...+ .....-+.|..+|+. +++.
T Consensus 501 ~D~~tG~~lw~~~~~~-~~~~~p~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 501 YAADTGEKLWEQPAAS-GVMAAPVTYSVDGEQYVTFM 536 (689)
T ss_dssp EETTTCCEEEEEECSS-CCCSCCEEEEETTEEEEEEE
T ss_pred EECCCCccceeeeCCC-CcccCceEEEECCEEEEEEE
Confidence 9999999987765433 333455778888864 4444
No 224
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.43 E-value=1.2e-13 Score=116.18 Aligned_cols=203 Identities=13% Similarity=0.025 Sum_probs=114.5
Q ss_pred CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccC
Q 019482 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153 (340)
Q Consensus 74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 153 (340)
++..+++++.|+.|+.||..+++....... +.+.+..+..++..+++++.||.|+.||.++++.+.....+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~ 78 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE---------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT 78 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC---------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC---------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc
Confidence 577899999999999999999988776643 22333334567778888889999999999888876555433
Q ss_pred cc-cee-EEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEEC
Q 019482 154 HK-SVL-DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231 (340)
Q Consensus 154 ~~-~i~-~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~ 231 (340)
.. .+. ...+. ++..+++++.|+.++.||.++|+.+..+..+. ...++|++.. ++.++.++.|+.||.
T Consensus 79 ~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~~~-----v~~~~~dg~v~a~d~ 147 (369)
T 2hz6_A 79 IPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSPSTSL-----LYLGRTEYTITMYDT 147 (369)
T ss_dssp HHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------------EEEEEEEEEEECCCS
T ss_pred CccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccccCCE-----EEEEecCCEEEEEEC
Confidence 22 111 11111 34567788889999999999999877665332 2345666665 566778899999999
Q ss_pred CCCcEEeeeeccCCCeeEEEECCCC---CEEEEeeCCCcEEEEeccCceEeecccccccccceee-EEEecCCe
Q 019482 232 STWNKIGHKRLLRKPASVLSISLDG---KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL-VEFCPTQR 301 (340)
Q Consensus 232 ~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~ 301 (340)
++++.+..+.... .....++++. ..+++++.||.|+.||..+++.+..... ..++.. ..++++|.
T Consensus 148 ~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~---~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 148 KTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY---ASPVVAFYVWQREGL 216 (369)
T ss_dssp SSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC---SSCEEEEEECTTSSC
T ss_pred CCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC---CCceEEEEEecCCce
Confidence 9998765543221 1223344432 5677788999999999999987655432 234433 34455664
No 225
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.43 E-value=8e-11 Score=98.10 Aligned_cols=249 Identities=8% Similarity=-0.083 Sum_probs=148.1
Q ss_pred eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec--
Q 019482 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-- 83 (340)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-- 83 (340)
.+..+++++ ++++++..... .++.+++|.++ .+ .+..-+.......+|...+..++++++|+++++-..
T Consensus 18 ~p~~va~~~---~g~~~v~~~~~----~~~~~~l~~~~-~g-~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~ 88 (343)
T 2qe8_A 18 APGNITLTP---DGRLFLSLHQF----YQPEMQVAELT-QD-GLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQ 88 (343)
T ss_dssp CEEEEEECT---TSCEEEEECGG----GCCSCSEEEEE-TT-EEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHH
T ss_pred CcceEEECC---CCCEEEEeCCC----CCCceEEEEEC-CC-CeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCC
Confidence 456777777 34555543211 11226777776 22 121111111112346678999999999886665443
Q ss_pred ---CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeE-EEcc---CCCcEEEEeCCCCceeeccccC---
Q 019482 84 ---NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGG---VDGHLRIMHWPSLRIILDEPKA--- 153 (340)
Q Consensus 84 ---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~---~dg~i~~~d~~~~~~~~~~~~~--- 153 (340)
++.|.+||+.+++....+.... ....+...+..+++++++..+ ++-. .++.|.+||+.+++....+..|
T Consensus 89 ~~~~~~i~~~d~~tg~~~~~~~~~~-~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~ 167 (343)
T 2qe8_A 89 SKSVPKLVAWDTLNNQLSRVIYLPP-PITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGI 167 (343)
T ss_dssp HTSCCEEEEEETTTTEEEEEEECCT-TTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTT
T ss_pred cCCCCeEEEEECCCCeEEEEEECCh-hhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcc
Confidence 5679999998887554442211 111233456899999865444 4444 5788999999877654433211
Q ss_pred --------------------------ccceeEEEecCCCCeEEEeeCCC-eEEEEEcc---CCe-----e---EEEeecC
Q 019482 154 --------------------------HKSVLDMDFSLDSEFLATTSTDG-SARIWKTE---DGV-----A---WTFLTRN 195 (340)
Q Consensus 154 --------------------------~~~i~~~~~~~~~~~l~~~~~d~-~v~iwd~~---~~~-----~---~~~~~~~ 195 (340)
...+..++|+|+++.|+.+..++ .+..++.. .+. . +..+ .
T Consensus 168 ~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g- 245 (343)
T 2qe8_A 168 APEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY-S- 245 (343)
T ss_dssp SCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE-E-
T ss_pred cccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec-c-
Confidence 01357899999999888877665 45555432 110 0 0111 1
Q ss_pred CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeecc-CCCeeEEEECCCCCEEEEeeCCCcEEEE
Q 019482 196 SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-RKPASVLSISLDGKYLAMGSKDGDICVV 271 (340)
Q Consensus 196 ~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 271 (340)
.......++++++|.. .++...++.|.+||..+++........ ......+++.++++++++.+..+.+.+|
T Consensus 246 ~~g~pdgia~d~~G~l-----~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 246 EKPICDGISIDKDHNI-----YVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp ECCSCSCEEECTTCCE-----EEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred cCCCCceEEECCCCCE-----EEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 1234678999999874 466667889999999556543222222 3457899999998888777655444333
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.42 E-value=2.2e-10 Score=103.83 Aligned_cols=242 Identities=10% Similarity=0.060 Sum_probs=159.5
Q ss_pred CCeEEEEec------CCCEEEEEecCceeeeeeccccCCC---C----------------------CCCCCeEEEEEecC
Q 019482 75 GDDFVCSTT------NGGCKLFEVYGGATDINLLAKKMPP---L----------------------QDAGPQKCLSFSVD 123 (340)
Q Consensus 75 ~~~l~~~~~------d~~i~iw~~~~~~~~~~~~~~~~~~---~----------------------~~~~~v~~~~~~~~ 123 (340)
+..+++++. ++.|+.+|..+++............ . ........++++|+
T Consensus 174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~ 253 (677)
T 1kb0_A 174 KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE 253 (677)
T ss_dssp TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT
T ss_pred CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC
Confidence 345555543 6889999999998776664322110 0 01112235788998
Q ss_pred CCeEEEccCCC-------------------cEEEEeCCCCceeeccccCc---------cceeEEEecCCC---CeEEEe
Q 019482 124 GSRFAAGGVDG-------------------HLRIMHWPSLRIILDEPKAH---------KSVLDMDFSLDS---EFLATT 172 (340)
Q Consensus 124 ~~~l~~~~~dg-------------------~i~~~d~~~~~~~~~~~~~~---------~~i~~~~~~~~~---~~l~~~ 172 (340)
+..++.+..++ .|..+|.++++....+.... ....-+....+| ..++.+
T Consensus 254 ~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~ 333 (677)
T 1kb0_A 254 LNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHA 333 (677)
T ss_dssp TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEEC
T ss_pred CCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEE
Confidence 88888877654 49999999999887654321 112223334467 679999
Q ss_pred eCCCeEEEEEccCCeeEEEeecCCCC----------ce------------------------eeEEEccCCCcceEEEEE
Q 019482 173 STDGSARIWKTEDGVAWTFLTRNSDE----------KI------------------------ELCRFSKDGTKPFLFCTV 218 (340)
Q Consensus 173 ~~d~~v~iwd~~~~~~~~~~~~~~~~----------~v------------------------~~~~~~~~~~~~~~~~~~ 218 (340)
+.+|.++++|.++|+.+..+...... ++ ..++++|++..+++...-
T Consensus 334 ~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~ 413 (677)
T 1kb0_A 334 PKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQN 413 (677)
T ss_dssp CTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEE
T ss_pred CCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChh
Confidence 99999999999999988766422100 00 156888887764332110
Q ss_pred e------------c--------------------------CCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEE
Q 019482 219 Q------------R--------------------------GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (340)
Q Consensus 219 ~------------~--------------------------~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 260 (340)
. + ...+.|..||+.+++.+-.... ..+.....+..++..++
T Consensus 414 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~ 492 (677)
T 1kb0_A 414 VPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVF 492 (677)
T ss_dssp CCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEE
T ss_pred cceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEE
Confidence 0 0 0238899999999998766653 33444555667888999
Q ss_pred EeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEE-EEec----------------CCcEEEEEec
Q 019482 261 MGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL-TASK----------------EWGAMITKLT 318 (340)
Q Consensus 261 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~----------------dg~i~iw~~~ 318 (340)
+++.||.+++||.++++.+..+...+ .....-+.+..+|+.++ ..+. .+.+.++.+.
T Consensus 493 ~g~~dg~l~a~D~~tG~~lw~~~~~~-~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~ 566 (677)
T 1kb0_A 493 QGTADGRLVAYHAATGEKLWEAPTGT-GVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG 566 (677)
T ss_dssp EECTTSEEEEEETTTCCEEEEEECSS-CCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred EECCCCcEEEEECCCCceeeeeeCCC-CcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence 99999999999999999988775444 33445667778886444 3222 3677888876
No 227
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.42 E-value=4.7e-11 Score=101.04 Aligned_cols=231 Identities=10% Similarity=-0.062 Sum_probs=151.3
Q ss_pred CCCCeEEEEecC-----CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc----------CCCcEE
Q 019482 73 PSGDDFVCSTTN-----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG----------VDGHLR 137 (340)
Q Consensus 73 ~~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~ 137 (340)
++++.+++.... +.|.++|..+.+....+... ..+ .+.++||+++++++. .++.|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG-------~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~Vs 152 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG-------FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVE 152 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC-------SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC-------CCC--ceEECCCCCEEEEEeccccccccCCCCCEEE
Confidence 467766666542 58999999999887776542 134 799999999888876 367899
Q ss_pred EEeCCCCceeeccccC-------ccceeEEEecCCCCeEEEeeC--CCeEEEEEccCCeeEEEeecCCCCceeeEEEccC
Q 019482 138 IMHWPSLRIILDEPKA-------HKSVLDMDFSLDSEFLATTST--DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD 208 (340)
Q Consensus 138 ~~d~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~--d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 208 (340)
++|..+++.+..+.-. ......+.++|||++++++.. ++.|.+.|+.+++.+..+.... +....|+
T Consensus 153 viD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g-----~~~~~p~ 227 (426)
T 3c75_H 153 VFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD-----CYHIFPA 227 (426)
T ss_dssp EECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-----EEEEEEE
T ss_pred EEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC-----ceeeccC
Confidence 9999998877665321 123567899999999998874 5789999999999988876322 1334555
Q ss_pred CCcceEEEEEecCCcceEEEEECCCCcEEee----eeccCCCe-eEEEECCCCCEEEEeeCCCcEEEEeccCceEee--c
Q 019482 209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGH----KRLLRKPA-SVLSISLDGKYLAMGSKDGDICVVDVKKMEINH--W 281 (340)
Q Consensus 209 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~----~~~~~~~i-~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~--~ 281 (340)
+... +++.+.|+.+.+.+..+++.... +.....++ ..+.++++++.++..+..+.+.+.|........ .
T Consensus 228 g~~~----~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~ 303 (426)
T 3c75_H 228 SPTV----FYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAP 303 (426)
T ss_dssp ETTE----EEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCC
T ss_pred CCcE----EEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeee
Confidence 5442 23334567777777755544321 11111221 235679998888887888999999986644221 1
Q ss_pred cc--------ccccccceeeEEEecCCeEEEEEec----------CCcEEEEEecCCC
Q 019482 282 SK--------RLHLGTSIALVEFCPTQRVVLTASK----------EWGAMITKLTVPA 321 (340)
Q Consensus 282 ~~--------~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~ 321 (340)
.. ..........++++||++.++.... ++.|.+.|....+
T Consensus 304 ~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k 361 (426)
T 3c75_H 304 IEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE 361 (426)
T ss_dssp EESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred eeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe
Confidence 10 0000112334789999876666532 3467777765443
No 228
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.42 E-value=9.5e-10 Score=92.25 Aligned_cols=218 Identities=15% Similarity=0.129 Sum_probs=141.0
Q ss_pred CCCceEEEEeCCCCCCcccCCeeeEEEe-------cCCCCeeEEEEcCCCCeEEEEecC------CCEEEEEecCceeee
Q 019482 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFD-------ESEGDPMTIAVNPSGDDFVCSTTN------GGCKLFEVYGGATDI 99 (340)
Q Consensus 33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~~~~~d------~~i~iw~~~~~~~~~ 99 (340)
.++.|.++++..+.. .+....+++ ........+...|+| .++++..+ +.|.++|..+.+...
T Consensus 104 ~s~~I~viD~~t~p~----~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~ 178 (462)
T 2ece_A 104 RSSRIYIIDTKPNPR----EPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLG 178 (462)
T ss_dssp TTCCEEEEECCSCTT----SCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEE
T ss_pred CCCeEEEEECCCCCC----CceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEE
Confidence 345688888753332 233333331 112246678889999 66666555 679999999888776
Q ss_pred eeccccCCCCCCCCCeEEEEEecCCCeEEEcc-------------------CCCcEEEEeCCCCceeeccccC-c-ccee
Q 019482 100 NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-------------------VDGHLRIMHWPSLRIILDEPKA-H-KSVL 158 (340)
Q Consensus 100 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------------------~dg~i~~~d~~~~~~~~~~~~~-~-~~i~ 158 (340)
....... ....-+.+.|+|+++.+++.. .+.+|.+||+.+++.+..+.-. . ....
T Consensus 179 ~~~~~~~----~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~ 254 (462)
T 2ece_A 179 KWEIDRG----DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMAL 254 (462)
T ss_dssp ECCSBCT----TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEE
T ss_pred EEccCCC----CccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccc
Confidence 6643211 112345688999999888874 3688999999988766655443 1 2345
Q ss_pred EEEe--cCCCCeEEEee------CCCeEEEEEccCCeeE--EEe--ecC---------------CCCceeeEEEccCCCc
Q 019482 159 DMDF--SLDSEFLATTS------TDGSARIWKTEDGVAW--TFL--TRN---------------SDEKIELCRFSKDGTK 211 (340)
Q Consensus 159 ~~~~--~~~~~~l~~~~------~d~~v~iwd~~~~~~~--~~~--~~~---------------~~~~v~~~~~~~~~~~ 211 (340)
.+.| +|+++++.+++ .+++|.+|..+.++.. +.+ ... .......+.+++|+++
T Consensus 255 ~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrf 334 (462)
T 2ece_A 255 ELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKF 334 (462)
T ss_dssp EEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCE
T ss_pred eeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCE
Confidence 5655 99999877666 4668887776554211 111 100 0234788999999997
Q ss_pred ceEEEEEecCCcceEEEEECCC---CcEEeeeeccC--------------CCeeEEEECCCCCEEEEee
Q 019482 212 PFLFCTVQRGDKALLAVYDIST---WNKIGHKRLLR--------------KPASVLSISLDGKYLAMGS 263 (340)
Q Consensus 212 ~~~~~~~~~~~d~~i~i~d~~~---~~~~~~~~~~~--------------~~i~~~~~s~~~~~l~~~~ 263 (340)
+ .++.-..+.|.+||+.. .+.+..+.... ..-..+.++|||++|+++.
T Consensus 335 L----YVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 335 L----YLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp E----EEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred E----EEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 4 34555678999999863 23444443321 1257899999999999987
No 229
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.39 E-value=7.5e-10 Score=87.28 Aligned_cols=196 Identities=12% Similarity=0.060 Sum_probs=136.4
Q ss_pred CeEEEEEecCCCeEEEccC--CCcEEEEeCCCCceeeccccCcc-ceeEEEecCCCCeE-EEeeCCCeEEEEEccCCeeE
Q 019482 114 PQKCLSFSVDGSRFAAGGV--DGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAW 189 (340)
Q Consensus 114 ~v~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l-~~~~~d~~v~iwd~~~~~~~ 189 (340)
....+.|++++.+.++.+. ++.|.++|+.+++.+..+.-... ....+++. ++.| ++.-.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 3578999998754444432 57999999999998776542222 22345554 4444 44446889999999999999
Q ss_pred EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC-----CCeeEEEECCCCCEEEEeeC
Q 019482 190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGSK 264 (340)
Q Consensus 190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~ 264 (340)
.++... . .....+++|++. ++.+..++.|.++|..+.+.+..+.... ..++.+.|. +|+..+....
T Consensus 100 ~~i~~g-~--~~g~glt~Dg~~-----l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~ 170 (266)
T 2iwa_A 100 KNFTHQ-M--KDGWGLATDGKI-----LYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ 170 (266)
T ss_dssp EEEECC-S--SSCCEEEECSSS-----EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred EEEECC-C--CCeEEEEECCCE-----EEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCC
Confidence 888644 1 123446778887 3334458899999999988777765432 135678887 6755555556
Q ss_pred CCcEEEEeccCceEeeccccccc-----------ccceeeEEEecCCe-EEEEEecCCcEEEEEecCC
Q 019482 265 DGDICVVDVKKMEINHWSKRLHL-----------GTSIALVEFCPTQR-VVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 265 dg~i~i~d~~~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~ 320 (340)
++.|.+.|..+++.+..+..... ....+.++|+|+++ +++++...+.+.+-++...
T Consensus 171 ~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 171 TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 78999999999998877653210 13568999999975 5566667788888888654
No 230
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.39 E-value=9.2e-14 Score=116.92 Aligned_cols=182 Identities=15% Similarity=0.062 Sum_probs=103.6
Q ss_pred CCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCcee-
Q 019482 123 DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIE- 201 (340)
Q Consensus 123 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~- 201 (340)
++..+++++.||.|+.||..+++.+..+.. ..+.+..+.+++..+++++.|+.|+.||.++++.+..+.......+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 567899999999999999999998877765 45555556677878888889999999999988876655422111111
Q ss_pred eEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeec
Q 019482 202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW 281 (340)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 281 (340)
+..+..++. +++++.++.++.||.++++.+..+..+. ...++|++..+++++.|+.|+.||.++++.+..
T Consensus 86 sp~~~~~~~------v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~ 155 (369)
T 2hz6_A 86 SPCRSSDGI------LYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWN 155 (369)
T ss_dssp CSCC-----------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred CceEecCCE------EEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEe
Confidence 111112333 5667778999999999999876655433 235667888999999999999999999887654
Q ss_pred ccccccccceeeEEEecCC---eEEEEEecCCcEEEEEecCC
Q 019482 282 SKRLHLGTSIALVEFCPTQ---RVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 282 ~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~iw~~~~~ 320 (340)
.... .....++.++. ..+++++.||.++.|+....
T Consensus 156 ~~~~----~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 156 ATYF----DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp EEEE----EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred Eecc----cccCccccCCccccceEEEECCCCEEEEEECCCC
Confidence 3211 12233344432 45667788888888887543
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.39 E-value=2.7e-10 Score=103.47 Aligned_cols=237 Identities=12% Similarity=0.090 Sum_probs=155.8
Q ss_pred CCCeEEEEecCCCEEEEEecCceeeeeeccc-cCCC-CCC-CCCeEEEEEecCCCeEEEcc------CCCcEEEEeCCCC
Q 019482 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAK-KMPP-LQD-AGPQKCLSFSVDGSRFAAGG------VDGHLRIMHWPSL 144 (340)
Q Consensus 74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~~~~-~~~-~~~v~~~~~~~~~~~l~~~~------~dg~i~~~d~~~~ 144 (340)
.+..+++++.|+.|..+|..+++........ .... ... ..++ . .++ .++++. .+|.|+.||.+++
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~----v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG 193 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPR----V-VNG-KVVIGNGGAEFGVRGYVTAYDAETG 193 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCE----E-ETT-EEEECCBCTTTCCBCEEEEEETTTC
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcE----E-ECC-EEEEEeCCCccCCCCEEEEEECCCC
Confidence 3567888889999999999999887766432 1100 001 1111 1 144 444443 3689999999999
Q ss_pred ceeeccccCc-------------------------------cceeEEEecCCCCeEEEeeCCCe----------------
Q 019482 145 RIILDEPKAH-------------------------------KSVLDMDFSLDSEFLATTSTDGS---------------- 177 (340)
Q Consensus 145 ~~~~~~~~~~-------------------------------~~i~~~~~~~~~~~l~~~~~d~~---------------- 177 (340)
+.+..+.... .....++++|+...++.++.++.
T Consensus 194 ~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y 273 (689)
T 1yiq_A 194 KEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLF 273 (689)
T ss_dssp CEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTT
T ss_pred cEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCcee
Confidence 9876553210 01125788888888888887763
Q ss_pred ---EEEEEccCCeeEEEeecCCC--------CceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC--
Q 019482 178 ---ARIWKTEDGVAWTFLTRNSD--------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-- 244 (340)
Q Consensus 178 ---v~iwd~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-- 244 (340)
|..+|.++|+.+-.+...+. ..+.......+|+.. -.++.++.++.++++|.++++.+.......
T Consensus 274 ~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~--~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~ 351 (689)
T 1yiq_A 274 LSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPR--KVLMQAPKNGFFYVIDRATGELLSAKGIVPQS 351 (689)
T ss_dssp TTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEE--EEEEECCTTSEEEEEETTTCCEEEEEESSCCS
T ss_pred eeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEE--EEEEEECCCCeEEEEECCCCCEeccccccccc
Confidence 99999999999877764321 111112222344311 116778899999999999999874322111
Q ss_pred -------------------------------------CCeeEEEECCCCCEEEEeeC-----------------------
Q 019482 245 -------------------------------------KPASVLSISLDGKYLAMGSK----------------------- 264 (340)
Q Consensus 245 -------------------------------------~~i~~~~~s~~~~~l~~~~~----------------------- 264 (340)
..-..++++|+..++++...
T Consensus 352 w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (689)
T 1yiq_A 352 WTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQ 431 (689)
T ss_dssp SEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCC
T ss_pred cccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccc
Confidence 01123688888888776532
Q ss_pred ----------------------CCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 265 ----------------------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 265 ----------------------dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
+|.|+.||+.+++.+-.... ..+...-.+...+.+++.++.||.++.||.+..+
T Consensus 432 ~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 432 LGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY---VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp CSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC---CCCccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence 37799999999998766532 2345555677788899999999999999987655
No 232
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.38 E-value=6e-10 Score=100.99 Aligned_cols=238 Identities=8% Similarity=-0.016 Sum_probs=159.6
Q ss_pred CCCeEEEEecCCCEEEEEecCceeeeeeccc-cCCCCCCCCCeEE-EEEecCCCeEEEccC------CCcEEEEeCCCCc
Q 019482 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAK-KMPPLQDAGPQKC-LSFSVDGSRFAAGGV------DGHLRIMHWPSLR 145 (340)
Q Consensus 74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~v~~-~~~~~~~~~l~~~~~------dg~i~~~d~~~~~ 145 (340)
++..+++++.|+.|..+|..+++........ ... ....+.. ... .+..+++++. ++.|+.+|..+++
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~---~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~ 201 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQK---GSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGE 201 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCC---SSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcC---cCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCc
Confidence 4567888889999999999999887766432 100 0011111 111 2335555543 6899999999999
Q ss_pred eeeccccCcc--------------------------------ceeEEEecCCCCeEEEeeCCC-----------------
Q 019482 146 IILDEPKAHK--------------------------------SVLDMDFSLDSEFLATTSTDG----------------- 176 (340)
Q Consensus 146 ~~~~~~~~~~--------------------------------~i~~~~~~~~~~~l~~~~~d~----------------- 176 (340)
.+.++..... ....++++|++..++.++.++
T Consensus 202 ~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~ 281 (677)
T 1kb0_A 202 RKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLY 281 (677)
T ss_dssp EEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred EEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCee
Confidence 8765543211 113578889888888877654
Q ss_pred --eEEEEEccCCeeEEEeecCCC--------CceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCC
Q 019482 177 --SARIWKTEDGVAWTFLTRNSD--------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKP 246 (340)
Q Consensus 177 --~v~iwd~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 246 (340)
+|..+|.++++.+-.+...+. .....+....+|+.. -.++.++.++.++++|.++++.+........+
T Consensus 282 ~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~--~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~ 359 (677)
T 1kb0_A 282 LASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPR--KVILHAPKNGFFFVLDRTNGKFISAKNFVPVN 359 (677)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEE--EEEEECCTTSEEEEEETTTCCEEEEEESSCCS
T ss_pred eEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEe--eEEEEECCCCEEEEEECCCCCEeccccccccC
Confidence 599999999999877664221 112223333466311 11678889999999999999987655422100
Q ss_pred -----------e------------------------eEEEECCCCCEEEEeeC---------------------------
Q 019482 247 -----------A------------------------SVLSISLDGKYLAMGSK--------------------------- 264 (340)
Q Consensus 247 -----------i------------------------~~~~~s~~~~~l~~~~~--------------------------- 264 (340)
+ ..++++|++.++++...
T Consensus 360 ~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 439 (677)
T 1kb0_A 360 WASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTG 439 (677)
T ss_dssp SEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGT
T ss_pred cccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccc
Confidence 0 25688998888887543
Q ss_pred ----------------CCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 265 ----------------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 265 ----------------dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
.|.|..||+.+++.+-.... ..++.+..+..++.+++.++.||.+++||....+
T Consensus 440 ~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 440 WNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE 509 (677)
T ss_dssp CCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cccccccccccCCCCCccEEEEEeCCCCcEEeecCC---CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence 27799999999998765532 3456666777888888999999999999987655
No 233
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.37 E-value=3.3e-11 Score=104.48 Aligned_cols=221 Identities=10% Similarity=0.028 Sum_probs=150.6
Q ss_pred CCCeEEEEecC-CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEE-e-cCCCeEEEcc------------------C
Q 019482 74 SGDDFVCSTTN-GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF-S-VDGSRFAAGG------------------V 132 (340)
Q Consensus 74 ~~~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~------------------~ 132 (340)
||++++....+ ..|.+.|+++.+....+.. +....+..+++ + |+++++++++ .
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i------p~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~ 173 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEI------PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY 173 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEEC------SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeC------CCCCCCcceeeeecCCCcEEEEecccccccCCCCccccccccc
Confidence 78888776654 5799999999886653321 12345778888 5 8999988884 3
Q ss_pred CCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCC------------------------------------
Q 019482 133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG------------------------------------ 176 (340)
Q Consensus 133 dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~------------------------------------ 176 (340)
++.+.+.|.++.+...++.-.. ....++++|+|+++++++.+.
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~ 252 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 252 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred CceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence 4679999999988777665433 456788999999988887543
Q ss_pred --eEEEEEccC--Cee-EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc------------EEee
Q 019482 177 --SARIWKTED--GVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN------------KIGH 239 (340)
Q Consensus 177 --~v~iwd~~~--~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~------------~~~~ 239 (340)
.|.+.|.++ ++. +..+... ....++.++|||+++ ++++..+..|.++|+.+.+ ....
T Consensus 253 i~~V~VID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDGk~v----~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~ 326 (595)
T 1fwx_A 253 LNGVKVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDKKHL----CVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 326 (595)
T ss_dssp ETTEEEEECSGGGCCSSEEEEEEE--SSCCCEEECTTSSEE----EEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred ECcEEEEeCcccCCceeEEEEecC--CCceEEEEcCCCCEE----EEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence 366667666 434 3444322 246789999999974 5777789999999999653 2222
Q ss_pred eeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC----------ceEeeccccccc---ccceeeEEEecCCeEEEEE
Q 019482 240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK----------MEINHWSKRLHL---GTSIALVEFCPTQRVVLTA 306 (340)
Q Consensus 240 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~ 306 (340)
.. .......++|+|+|...++...|++|.+||+.+ .+.+..+..... ...-.++.++|||++|+++
T Consensus 327 v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~ 405 (595)
T 1fwx_A 327 PE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCL 405 (595)
T ss_dssp CB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred cC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEc
Confidence 22 234567899999994444556789999999987 344444432110 1111334568999999887
Q ss_pred ec
Q 019482 307 SK 308 (340)
Q Consensus 307 ~~ 308 (340)
..
T Consensus 406 Nk 407 (595)
T 1fwx_A 406 SK 407 (595)
T ss_dssp ES
T ss_pred CC
Confidence 65
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.33 E-value=5.1e-10 Score=92.58 Aligned_cols=220 Identities=12% Similarity=-0.022 Sum_probs=145.8
Q ss_pred CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCc
Q 019482 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH 154 (340)
Q Consensus 75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 154 (340)
+..+..++.++.+..+|.. ++....... ....+.++...+++. +..++.++.|..+|.. ++.........
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~-------~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~ 176 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKT-------KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTND 176 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEEC-------SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSS
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcC-------CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCC
Confidence 4567778878889999987 554433322 122345556666775 5567778899999988 77665555444
Q ss_pred cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC
Q 019482 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234 (340)
Q Consensus 155 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 234 (340)
..+.++...+++..++. + +.|..+| .+++........ ...+.++...+++. +..++.++.+..+|. ++
T Consensus 177 ~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~-~~~~~~~~~~~~g~------l~v~t~~~gl~~~~~-~g 244 (330)
T 3hxj_A 177 AITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYAG-YWTVTRPAISEDGT------IYVTSLDGHLYAINP-DG 244 (330)
T ss_dssp CCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECCS-SCCCSCCEECTTSC------EEEEETTTEEEEECT-TS
T ss_pred CceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEccC-CcceeceEECCCCe------EEEEcCCCeEEEECC-CC
Confidence 56777778777775544 4 7899999 777766655432 34588888888887 566666778888874 55
Q ss_pred cEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEE
Q 019482 235 NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI 314 (340)
Q Consensus 235 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 314 (340)
+.+..+......+..+.+.+++ .|.+++.+|.|..+|. +++....... . ...+.++...++|+ |..++.+|.+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~-~-~~~~~~~~~d~~g~-l~~gt~~G~~~~ 319 (330)
T 3hxj_A 245 TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFET-G-SWIIATPVIDENGT-IYFGTRNGKFYA 319 (330)
T ss_dssp CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEEC-S-SCCCSCCEECTTCC-EEEECTTSCEEE
T ss_pred CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEc-C-CccccceEEcCCCE-EEEEcCCCeEEE
Confidence 6555555444444556666566 5666777888999996 5665544322 2 34677888878876 556888999988
Q ss_pred EEecCCC
Q 019482 315 TKLTVPA 321 (340)
Q Consensus 315 w~~~~~~ 321 (340)
...+...
T Consensus 320 ~~~~~~~ 326 (330)
T 3hxj_A 320 LFNLEHH 326 (330)
T ss_dssp EEC----
T ss_pred Eeccccc
Confidence 8765443
No 235
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.33 E-value=6.4e-09 Score=83.32 Aligned_cols=222 Identities=8% Similarity=-0.042 Sum_probs=140.7
Q ss_pred CCeeEEEEcCCCCeEEEEe-cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEE-ccCCCcEEEEeC
Q 019482 64 GDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHW 141 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~~d~ 141 (340)
..+..++|++++..|+.+. .++.|..+++...... .+.. ........+++++++..|+. -...+.|.++++
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~~~~------~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~ 108 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-TIIR------QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKM 108 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-EEEC------TTCCCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE-EEEE------CCCCCccEEEEEecCCeEEEEECCCCEEEEEEc
Confidence 3478999999776666554 4678999998765432 1211 01246789999997655554 445678999998
Q ss_pred CCCceeeccccCccceeEEEecCCCCeEEEeeC---CCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEE
Q 019482 142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218 (340)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 218 (340)
..................++++|++..|..+.. .+.|..+++.. +....+..........+++++++..+ .+
T Consensus 109 ~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~l----yv 183 (267)
T 1npe_A 109 DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQL----CW 183 (267)
T ss_dssp TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEE----EE
T ss_pred CCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEE----EE
Confidence 643322212222245689999996665555543 36888888753 33333322222457899999988763 35
Q ss_pred ecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceEeecccccccccceeeEEEe
Q 019482 219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC 297 (340)
Q Consensus 219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~ 297 (340)
+....+.|..+|............ ......++. ++..|+.+. .++.|..+|..+++.+..+..+. ......+++.
T Consensus 184 ~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~--d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~ 259 (267)
T 1npe_A 184 VDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTS--YGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIA 259 (267)
T ss_dssp EETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEE--ETTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEE
T ss_pred EECCCCEEEEEecCCCceEEEecC-CCCceEEEE--eCCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeec
Confidence 556678999999986543333332 223455665 345555554 56899999999998877764332 2247888888
Q ss_pred cCCe
Q 019482 298 PTQR 301 (340)
Q Consensus 298 ~~~~ 301 (340)
|++.
T Consensus 260 ~~~~ 263 (267)
T 1npe_A 260 LSQC 263 (267)
T ss_dssp CSCC
T ss_pred CccC
Confidence 8864
No 236
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.30 E-value=1.3e-09 Score=84.85 Aligned_cols=192 Identities=10% Similarity=0.126 Sum_probs=131.3
Q ss_pred CeEEEEEecCCCeEEEccCCC--cEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEe-eCCCeEEEEEccCCeeEE
Q 019482 114 PQKCLSFSVDGSRFAAGGVDG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT-STDGSARIWKTEDGVAWT 190 (340)
Q Consensus 114 ~v~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~v~iwd~~~~~~~~ 190 (340)
....+.|+ ++.++.+.+.+| .|+.+|+++++......-. .........++++.|... -.++.+.+||.++.+.+.
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEE
Confidence 34788998 666666666665 8999999999987766433 333333333335554444 468899999999999999
Q ss_pred EeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC-----CCeeEEEECCCCCEEEEeeCC
Q 019482 191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGSKD 265 (340)
Q Consensus 191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~d 265 (340)
++..... ...++++++. ++.+..++.|.++|..+.+.+..+.... ..++.+.|. +|+..+..-.+
T Consensus 122 ti~~~~e----G~glt~dg~~-----L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~ 191 (262)
T 3nol_A 122 SFNYDGE----GWGLTHNDQY-----LIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQT 191 (262)
T ss_dssp EEECSSC----CCCEEECSSC-----EEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred EEECCCC----ceEEecCCCE-----EEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccC
Confidence 9875432 2344467776 4444457889999999998877765432 234567776 67655555568
Q ss_pred CcEEEEeccCceEeecccccc----------cccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 266 GDICVVDVKKMEINHWSKRLH----------LGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 266 g~i~i~d~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
+.|.+.|.++++.+..+.... .....+.|+|+|+++.|+..++.. =++|.++
T Consensus 192 ~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W-p~~~ev~ 253 (262)
T 3nol_A 192 NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW-PKVFEIT 253 (262)
T ss_dssp SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC-SEEEEEE
T ss_pred CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC-CceEEEE
Confidence 899999999999887664321 123568999999887777776643 2455554
No 237
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.30 E-value=6.3e-09 Score=85.81 Aligned_cols=251 Identities=10% Similarity=-0.008 Sum_probs=153.0
Q ss_pred EEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCC------------CCCCCCCeEEEEEec-CC
Q 019482 58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMP------------PLQDAGPQKCLSFSV-DG 124 (340)
Q Consensus 58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~------------~~~~~~~v~~~~~~~-~~ 124 (340)
.+.+.-....+++|+++|++++++..++.|..|+..+............. .......+..+++.+ ++
T Consensus 13 ~~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 13 LIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN 92 (322)
T ss_dssp EEECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred ecCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence 34444456788999999987888888888999988765432111000000 000113578899998 66
Q ss_pred CeEEEccCCCcEEEEeCCCCceee--ccccC--ccceeEEEecC-CCCeEEEeeC-----------------CCeEEEEE
Q 019482 125 SRFAAGGVDGHLRIMHWPSLRIIL--DEPKA--HKSVLDMDFSL-DSEFLATTST-----------------DGSARIWK 182 (340)
Q Consensus 125 ~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~--~~~i~~~~~~~-~~~~l~~~~~-----------------d~~v~iwd 182 (340)
+ |+.+...+.|..+|..+++... ..... ......+++.+ +|++.++-.. ++.|..+|
T Consensus 93 ~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 93 Q-LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp E-EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred c-EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence 5 4444444558888876553211 11111 12467899999 9987666432 36788899
Q ss_pred ccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc--EEeeeeccCCCeeEEEECCCCCEEE
Q 019482 183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLA 260 (340)
Q Consensus 183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~ 260 (340)
..+++....... . .....++++|+++.+ .++....+.|..|++.... ....+....+ ...++++++|++.+
T Consensus 172 ~~~~~~~~~~~~-~-~~p~gia~~~dg~~l----yv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~v 244 (322)
T 2fp8_A 172 PSTKETTLLLKE-L-HVPGGAEVSADSSFV----LVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWV 244 (322)
T ss_dssp TTTTEEEEEEEE-E-SCCCEEEECTTSSEE----EEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEE
T ss_pred CCCCEEEEeccC-C-ccCcceEECCCCCEE----EEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEE
Confidence 876664332221 1 235789999999853 2444557889999987521 1111222223 67899999998766
Q ss_pred EeeC----------CCcEEEEeccCceEeeccccccc--ccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 261 MGSK----------DGDICVVDVKKMEINHWSKRLHL--GTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 261 ~~~~----------dg~i~i~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
+... .+.|..+|.. ++.+..+..... -..+..+++ .+++++++....+.|..+++.
T Consensus 245 a~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 245 SSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred EecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 6544 4678888874 555544432210 134667776 577777777778888888775
No 238
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.28 E-value=4e-09 Score=83.15 Aligned_cols=198 Identities=8% Similarity=-0.026 Sum_probs=136.8
Q ss_pred CeeEEEEcCCCCeEEEEec--CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482 65 DPMTIAVNPSGDDFVCSTT--NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (340)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 142 (340)
....++|+|++..+++.+. ++.|+++|+.+++....+... .......+++.. ++..++...++.+.++|..
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~------~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~ 94 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMD------DSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRR 94 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECC------TTCCEEEEEEET-TEEEEEETTCSEEEEEETT
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecC------CCcceEEEEEeC-CEEEEEEecCCEEEEEECC
Confidence 3679999998754444443 578999999999877665321 111223455542 2344555568899999999
Q ss_pred CCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCC----CceeeEEEccCCCcceEEEEE
Q 019482 143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD----EKIELCRFSKDGTKPFLFCTV 218 (340)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~ 218 (340)
+.+.+..+..... ....+++|++.++++..++.|.++|.++.+.+..+.-... ..++.+.|. ++.. .+
T Consensus 95 t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l-----yv 166 (266)
T 2iwa_A 95 TLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV-----WA 166 (266)
T ss_dssp TTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE-----EE
T ss_pred CCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE-----EE
Confidence 9888877653311 2344667888877777789999999999888887763321 135678888 6642 34
Q ss_pred ecCCcceEEEEECCCCcEEeeeeccC-------------CCeeEEEECCCCCEEEE-eeCCCcEEEEeccCce
Q 019482 219 QRGDKALLAVYDISTWNKIGHKRLLR-------------KPASVLSISLDGKYLAM-GSKDGDICVVDVKKME 277 (340)
Q Consensus 219 ~~~~d~~i~i~d~~~~~~~~~~~~~~-------------~~i~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~ 277 (340)
....++.|.+.|..+++.+..+.... ...+.++|+|+++.+++ +...+.|...++....
T Consensus 167 n~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 167 NIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred ecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 45567899999999999887776421 24589999999875555 5567889998887643
No 239
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.28 E-value=1e-08 Score=86.40 Aligned_cols=222 Identities=11% Similarity=0.057 Sum_probs=138.9
Q ss_pred CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCc
Q 019482 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH 154 (340)
Q Consensus 75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 154 (340)
+..++.++.++.+..+|..+++........... ... ......... +..++.+..++.+..+|..+++.........
T Consensus 143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~-~~~-~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~ 218 (376)
T 3q7m_A 143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPS-LSL-RGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQ 218 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-------CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCc-eee-cCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEeccc
Confidence 457788888999999999888876655332110 000 000111121 3467888889999999999998776554321
Q ss_pred c-------ceeEEEecC--CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcce
Q 019482 155 K-------SVLDMDFSL--DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225 (340)
Q Consensus 155 ~-------~i~~~~~~~--~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~ 225 (340)
. .+..+.-.| .+..++.++.++.+..+|.++++.+..... .....+... +.. +..++.++.
T Consensus 219 ~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~---~~~~~~~~~--~~~-----l~~~~~~g~ 288 (376)
T 3q7m_A 219 ATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL---GSVNDFIVD--GNR-----IYLVDQNDR 288 (376)
T ss_dssp -----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC---CCEEEEEEE--TTE-----EEEEETTCC
T ss_pred CCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC---CCCCCceEE--CCE-----EEEEcCCCe
Confidence 1 011111222 356677788899999999999988766542 123344433 333 555667889
Q ss_pred EEEEECCCCcEEeeeecc-CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceee-EEEecCCeEE
Q 019482 226 LAVYDISTWNKIGHKRLL-RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL-VEFCPTQRVV 303 (340)
Q Consensus 226 i~i~d~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l 303 (340)
+..+|..+++.+-..... ......... .+..|++++.+|.|..+|..+++.+....... ..+.. ... . +..|
T Consensus 289 l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~--~~~~~~~~~-~-~~~l 362 (376)
T 3q7m_A 289 VMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDS--SGFQTEPVA-A-DGKL 362 (376)
T ss_dssp EEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCT--TCBCSCCEE-E-TTEE
T ss_pred EEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCC--CcceeCCEE-E-CCEE
Confidence 999999999877555422 222222333 35688889999999999999998876543211 22322 222 2 3467
Q ss_pred EEEecCCcEEEEE
Q 019482 304 LTASKEWGAMITK 316 (340)
Q Consensus 304 ~~~~~dg~i~iw~ 316 (340)
+.++.+|.++.|+
T Consensus 363 ~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 363 LIQAKDGTVYSIT 375 (376)
T ss_dssp EEEBTTSCEEEEE
T ss_pred EEEeCCCEEEEEe
Confidence 7788899998886
No 240
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.27 E-value=7.8e-10 Score=92.09 Aligned_cols=231 Identities=8% Similarity=-0.058 Sum_probs=141.7
Q ss_pred CCceEEEEeCCCCCCcccCCeeeEEEecC-------CCCeeEEEEcCCCCeEEEEec--CCCEEE--EEecCceeeeeec
Q 019482 34 PSVLEIFSFDPKTTSVYTSPLVTYVFDES-------EGDPMTIAVNPSGDDFVCSTT--NGGCKL--FEVYGGATDINLL 102 (340)
Q Consensus 34 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~~~~~--d~~i~i--w~~~~~~~~~~~~ 102 (340)
++.|.+++.. +.....++..+ ......++++|||++++++.. +..+.+ +|..+ ...+.
T Consensus 95 ~~~VsviD~~--------T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~ 163 (368)
T 1mda_H 95 TDYVEVFDPV--------TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTK 163 (368)
T ss_dssp EEEEEEECTT--------TCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEE
T ss_pred CCEEEEEECC--------CCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEE
Confidence 4567777665 33333344322 135778999999999998875 356888 88876 22221
Q ss_pred cccCCCCCCCCCeEEEEEecCCC-eEEEccCCCcEEEEeCCC-----Cceee----ccccCccceeEEEecCCCCeEEEe
Q 019482 103 AKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPS-----LRIIL----DEPKAHKSVLDMDFSLDSEFLATT 172 (340)
Q Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~-----~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~ 172 (340)
. . +. ..+.|+++ .+++.+.||.+.+.++++ ++... .+.-...+. . .+++..++..
T Consensus 164 v------~--~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~v 228 (368)
T 1mda_H 164 S------A--SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWA 228 (368)
T ss_dssp C------S--SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEEC
T ss_pred C------C--Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEE
Confidence 1 0 11 12345543 445566788888888876 43321 111112233 3 6666666666
Q ss_pred eCCCeEEEEEccCCe--eEEEeecC------C---CCceeeEEEccCCCcceEEEEEec-C-C-----cceEEEEECCCC
Q 019482 173 STDGSARIWKTEDGV--AWTFLTRN------S---DEKIELCRFSKDGTKPFLFCTVQR-G-D-----KALLAVYDISTW 234 (340)
Q Consensus 173 ~~d~~v~iwd~~~~~--~~~~~~~~------~---~~~v~~~~~~~~~~~~~~~~~~~~-~-~-----d~~i~i~d~~~~ 234 (340)
+. +.+.+.|+.... .+..+... . ......++++|+++.+|+ ... . . +..+.++|+.+.
T Consensus 229 s~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV---~~~~~~~~~~~~~~~~~ViD~~t~ 304 (368)
T 1mda_H 229 VA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI---LTVEHSRSCLAAAENTSSVTASVG 304 (368)
T ss_dssp BS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE---EEEECSSCTTSCEEEEEEEESSSC
T ss_pred cC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE---EeccccCcccccCCCEEEEECCCC
Confidence 66 999999986542 22222111 0 011223789999997432 111 1 2 234559999999
Q ss_pred cEEeeeeccCCCeeEEEECCCCCE-EEEee-CCCcEEEEeccCceEeecccccccccceeeEEEec
Q 019482 235 NKIGHKRLLRKPASVLSISLDGKY-LAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298 (340)
Q Consensus 235 ~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~ 298 (340)
+.+..+.... ....+.|+|||++ +++.. .++.|.++|+.+++.+..+.. +.....+++.+
T Consensus 305 ~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v---g~~P~~i~~~~ 366 (368)
T 1mda_H 305 QTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL---DKGPESLSVQN 366 (368)
T ss_dssp CEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC---CSCCCEEECCC
T ss_pred eEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC---CCCCCEEEeec
Confidence 9887776544 5788999999985 45555 489999999999999987753 33556666654
No 241
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.27 E-value=1.5e-08 Score=85.45 Aligned_cols=222 Identities=8% Similarity=0.008 Sum_probs=141.2
Q ss_pred CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccC
Q 019482 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153 (340)
Q Consensus 74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 153 (340)
++..+++++.++.|..+|..+++.......... ....+ .. .+..+++++.++.|..+|..+++........
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~---~~~~p----~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~ 172 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGE---ALSRP----VV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLD 172 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSC---CCSCC----EE--ETTEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCc---eEcCC----EE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCC
Confidence 456788888899999999998887665532210 01111 11 2347777888999999999999887665433
Q ss_pred ccce-----eEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCc---------e-eeEEEccCCCcceEEEEE
Q 019482 154 HKSV-----LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK---------I-ELCRFSKDGTKPFLFCTV 218 (340)
Q Consensus 154 ~~~i-----~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~---------v-~~~~~~~~~~~~~~~~~~ 218 (340)
.... ...... +..++.++.++.+..+|.++++.+.......... + ..... .++. +.
T Consensus 173 ~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~------v~ 243 (376)
T 3q7m_A 173 MPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV-VNGV------VF 243 (376)
T ss_dssp C-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE-ETTE------EE
T ss_pred CCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE-ECCE------EE
Confidence 2211 122222 4567788889999999999998876665321100 1 11111 1232 56
Q ss_pred ecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEec
Q 019482 219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298 (340)
Q Consensus 219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~ 298 (340)
.++.++.+..+|.++++.+..... .....+.. ++..+++++.++.|..+|..+++.+....... ...+......
T Consensus 244 ~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~- 317 (376)
T 3q7m_A 244 ALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLL-HRLLTSPVLY- 317 (376)
T ss_dssp EECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTT-TSCCCCCEEE-
T ss_pred EEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccC-CCcccCCEEE-
Confidence 667789999999999987754432 23334433 46688888889999999999998765443111 1223333332
Q ss_pred CCeEEEEEecCCcEEEEEecCC
Q 019482 299 TQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 299 ~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
+..|+.++.+|.+.+++....
T Consensus 318 -~~~l~v~~~~g~l~~~d~~tG 338 (376)
T 3q7m_A 318 -NGNLVVGDSEGYLHWINVEDG 338 (376)
T ss_dssp -TTEEEEECTTSEEEEEETTTC
T ss_pred -CCEEEEEeCCCeEEEEECCCC
Confidence 456778888888888886543
No 242
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.27 E-value=1.9e-09 Score=83.94 Aligned_cols=184 Identities=15% Similarity=0.097 Sum_probs=126.5
Q ss_pred CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeE-EEeeCCCeEEEEEccCCeeEEE
Q 019482 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAWTF 191 (340)
Q Consensus 113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~v~iwd~~~~~~~~~ 191 (340)
.....+.|+ ++.+..+.+.+|.|+++|+++++.+... ...........++++.| +..-.++.+.+||.++.+.+.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 345788887 4566777778889999999999987766 22333332233334444 4444688999999999999999
Q ss_pred eecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC-----CCeeEEEECCCCCEEEEeeCCC
Q 019482 192 LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGSKDG 266 (340)
Q Consensus 192 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~dg 266 (340)
+..... -..++ ++++. ++.+..++.|.++|..+.+.+..+.... ..++.+.|. +|+..+..-.++
T Consensus 132 i~~~~e--GwGLt--~Dg~~-----L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~ 201 (268)
T 3nok_A 132 TRYSGE--GWGLC--YWNGK-----LVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSS 201 (268)
T ss_dssp EECSSC--CCCEE--EETTE-----EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCS
T ss_pred EeCCCc--eeEEe--cCCCE-----EEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCC
Confidence 875432 23443 56765 3444458899999999998877765432 245667776 776555554678
Q ss_pred cEEEEeccCceEeecccccc-----------cccceeeEEEecCCeEEEEEecC
Q 019482 267 DICVVDVKKMEINHWSKRLH-----------LGTSIALVEFCPTQRVVLTASKE 309 (340)
Q Consensus 267 ~i~i~d~~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~~~~~d 309 (340)
.|.+.|.++++.+..+.... .....+.|+++|+++.|+..++-
T Consensus 202 ~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 202 DVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred eEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 99999999999887664321 12467899999987666655553
No 243
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.25 E-value=1.6e-09 Score=94.09 Aligned_cols=190 Identities=11% Similarity=0.053 Sum_probs=133.6
Q ss_pred CCCeEEEccC-CCcEEEEeCCCCceee--ccccCccceeEEEe-c-CCCCeEEEee------------------CCCeEE
Q 019482 123 DGSRFAAGGV-DGHLRIMHWPSLRIIL--DEPKAHKSVLDMDF-S-LDSEFLATTS------------------TDGSAR 179 (340)
Q Consensus 123 ~~~~l~~~~~-dg~i~~~d~~~~~~~~--~~~~~~~~i~~~~~-~-~~~~~l~~~~------------------~d~~v~ 179 (340)
||++++.... ++.|.+.|+.+.++.. .+... ..+..+++ + |+++++++++ .++.+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g-~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA-KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC-CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC-CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 7887776654 5679999999988766 33322 35778887 5 8999988884 345799
Q ss_pred EEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecC------------------------------C---cceE
Q 019482 180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG------------------------------D---KALL 226 (340)
Q Consensus 180 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------------------------------~---d~~i 226 (340)
+.|.++.+...++.-.. ....++++|+|++.|..+--+.. . -+.|
T Consensus 179 vID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 99999999888887433 36778899999975432210000 0 0237
Q ss_pred EEEECCC--CcE-EeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCce------------Eeecccccccccc
Q 019482 227 AVYDIST--WNK-IGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKME------------INHWSKRLHLGTS 290 (340)
Q Consensus 227 ~i~d~~~--~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~------------~~~~~~~~~~~~~ 290 (340)
.+.|.++ ++. +..+... ....++.++|||+++++++ .+..|.++|+.+.+ ...... .+..
T Consensus 257 ~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~---vG~g 332 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE---LGLG 332 (595)
T ss_dssp EEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB---CCSC
T ss_pred EEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC---CCCC
Confidence 7788877 444 3344332 3567799999999888775 57899999999763 222222 2457
Q ss_pred eeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482 291 IALVEFCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 291 i~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
...++|+|+|....+.-.|+.|.+|+++.
T Consensus 333 P~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 333 PLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred cceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 89999999996666777899999999976
No 244
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.22 E-value=1.5e-08 Score=78.31 Aligned_cols=195 Identities=12% Similarity=0.159 Sum_probs=130.3
Q ss_pred CCCeEEEEEecCCCeEEEccCC--CcEEEEeCCCCceeeccccCccceeEEEecCCCCe-EEEeeCCCeEEEEEccCCee
Q 019482 112 AGPQKCLSFSVDGSRFAAGGVD--GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVA 188 (340)
Q Consensus 112 ~~~v~~~~~~~~~~~l~~~~~d--g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~ 188 (340)
......+.|++ +.++.+.+.+ ..|+.+|+.+++......-.. ........+.++. ....-.++.+.+||.++.+.
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~ 97 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTP 97 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcE
Confidence 35567899986 5555555554 489999999999877664332 2222222333444 44445789999999999999
Q ss_pred EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC-----CCeeEEEECCCCCEEEEee
Q 019482 189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGS 263 (340)
Q Consensus 189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~ 263 (340)
+.++.....+ .. +.+++.. ++.+..++.|.++|..+.+.+..+.... ..++.+.+. +|+..+..-
T Consensus 98 ~~ti~~~~~G--wg--lt~dg~~-----L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw 167 (243)
T 3mbr_X 98 RARFRYPGEG--WA--LTSDDSH-----LYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW 167 (243)
T ss_dssp EEEEECSSCC--CE--EEECSSC-----EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred EEEEeCCCCc--eE--EeeCCCE-----EEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEEC
Confidence 9998754322 33 4466766 3444458899999999998877765432 345666765 666555554
Q ss_pred CCCcEEEEeccCceEeeccccc-----------ccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482 264 KDGDICVVDVKKMEINHWSKRL-----------HLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 264 ~dg~i~i~d~~~~~~~~~~~~~-----------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
.+..|.+.|.++++.+..+... ......+.|+++|+++.|+..++-. =++|.++.
T Consensus 168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~w-p~~~~v~~ 233 (243)
T 3mbr_X 168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRW-PMLYEIRL 233 (243)
T ss_dssp TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTC-SEEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCC-CcEEEEEE
Confidence 6789999999999987765422 1124678999999877666666542 24555554
No 245
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.20 E-value=2.4e-09 Score=88.44 Aligned_cols=221 Identities=13% Similarity=0.013 Sum_probs=138.8
Q ss_pred CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC
Q 019482 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL 144 (340)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 144 (340)
.+.++...++|. +..++.+ +..+|. +++........ ........+. +..+..++.++.|..+|.. +
T Consensus 61 ~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~-------~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g 126 (330)
T 3hxj_A 61 IECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTK-------KAIVSDFTIF--EDILYVTSMDGHLYAINTD-G 126 (330)
T ss_dssp EEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC------------CCEEEE--TTEEEEECTTSEEEEECTT-S
T ss_pred cccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECC-------CCcccCceEE--CCEEEEEecCCEEEEEcCC-C
Confidence 356677766665 4444444 888875 44333222111 1111222233 4467777888999999988 7
Q ss_pred ceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc
Q 019482 145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA 224 (340)
Q Consensus 145 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~ 224 (340)
+...........+.++...+++. +..++.++.|..+|.. ++....+... ...+.++...+++. +..++ +
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~-~~~~~~~~~d~~g~------l~v~t--~ 195 (330)
T 3hxj_A 127 TEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTN-DAITSAASIGKDGT------IYFGS--D 195 (330)
T ss_dssp CEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECS-SCCCSCCEECTTCC------EEEES--S
T ss_pred CEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecC-CCceeeeEEcCCCE------EEEEe--C
Confidence 76655544444566677777776 5567778999999998 7776666533 34577788877887 34444 7
Q ss_pred eEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEE
Q 019482 225 LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL 304 (340)
Q Consensus 225 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 304 (340)
.|..+| .+++...........+.++...++|. |.+++.++.|..+|. +++....... . ...+..+.+.+++. |.
T Consensus 196 ~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~-~-~~~~~~~~~~~~g~-l~ 269 (330)
T 3hxj_A 196 KVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKT-G-KRIESSPVIGNTDT-IY 269 (330)
T ss_dssp SEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEEC-S-SCCCSCCEECTTSC-EE
T ss_pred EEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeC-C-CCccccceEcCCCe-EE
Confidence 799999 77777666655556688888888875 455666788888885 4444433322 1 22345566666665 56
Q ss_pred EEecCCcEEEEE
Q 019482 305 TASKEWGAMITK 316 (340)
Q Consensus 305 ~~~~dg~i~iw~ 316 (340)
.++.+|.+..++
T Consensus 270 v~t~~ggl~~~d 281 (330)
T 3hxj_A 270 FGSYDGHLYAIN 281 (330)
T ss_dssp EECTTCEEEEEC
T ss_pred EecCCCCEEEEC
Confidence 666777777776
No 246
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.19 E-value=1.4e-07 Score=77.09 Aligned_cols=227 Identities=11% Similarity=0.031 Sum_probs=136.7
Q ss_pred CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC--CcEEEEeC
Q 019482 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--GHLRIMHW 141 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~~~d~ 141 (340)
.....++|+++|+.+++-..++.|..||...... ... . ....+..+++.++++++++.... ..|..++.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-~~~-~-------~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~ 102 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-IHA-T-------VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK 102 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-EEE-E-------CSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE-EEE-e-------CCCCceeEEEcCCCcEEEEeccCCcceEEEEcC
Confidence 5688999999998666666778898888765322 111 1 12467899999999866554332 24667777
Q ss_pred CCCceeeccc-cCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee-EEEeec--------CCCCceeeEEEccCCCc
Q 019482 142 PSLRIILDEP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTR--------NSDEKIELCRFSKDGTK 211 (340)
Q Consensus 142 ~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~--------~~~~~v~~~~~~~~~~~ 211 (340)
.+++...... ........++..+++..+++-..++.|+.+|...++. +..... ..-.....+ +|+++.
T Consensus 103 ~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 103 SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 7766432211 1112234445455555455554688999999875432 111100 011123445 788875
Q ss_pred ceEEEEEecCCcceEEEEECCC-CcE--EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEee--cccccc
Q 019482 212 PFLFCTVQRGDKALLAVYDIST-WNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH--WSKRLH 286 (340)
Q Consensus 212 ~~~~~~~~~~~d~~i~i~d~~~-~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~ 286 (340)
+ .++....+.|..||+.. ++. ...+.. ......++++++|++.++....+.|.++|.. ++... .+.. .
T Consensus 181 l----yv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~-~ 253 (306)
T 2p4o_A 181 L----YVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ-G 253 (306)
T ss_dssp E----EEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG-T
T ss_pred E----EEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc-c
Confidence 3 35556778999999875 321 111111 1345678999999887777778899999975 54422 2221 1
Q ss_pred cccceeeEEEe---cCCeEEEEEecC
Q 019482 287 LGTSIALVEFC---PTQRVVLTASKE 309 (340)
Q Consensus 287 ~~~~i~~~~~~---~~~~~l~~~~~d 309 (340)
....++++|. ||++.|+.++..
T Consensus 254 -~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 254 -VIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp -CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred -cCCceEEEEecccCCCCEEEEECCC
Confidence 2468899998 887666555443
No 247
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.15 E-value=1.1e-06 Score=81.55 Aligned_cols=242 Identities=10% Similarity=0.024 Sum_probs=152.8
Q ss_pred CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC
Q 019482 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS 143 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 143 (340)
..|.++...++|...+ |+.+| |.+|+..+...............-....|.++...++|.+ -.|+.++-|..|+..+
T Consensus 263 ~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-Wigt~~~Gl~~~~~~~ 339 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWI-GTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGM-WLGTYFGGLNYYHPIR 339 (795)
T ss_dssp SBEEEEEECTTSCEEE-EESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCE-EEEESSSCEEEECGGG
T ss_pred CeEEEEEEcCCCCEEE-EeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCE-EEEECCCCeEEeCCCc
Confidence 5699999988887554 44556 9999987765432211110011113467999999988864 4566667788888665
Q ss_pred Cceeeccc-----c-CccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeec-------CCCCceeeEEEccCCC
Q 019482 144 LRIILDEP-----K-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-------NSDEKIELCRFSKDGT 210 (340)
Q Consensus 144 ~~~~~~~~-----~-~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~ 210 (340)
........ . ....|.++...++|+ |..|+.++-|..||..+++....... .....|.++...+++.
T Consensus 340 ~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~ 418 (795)
T 4a2l_A 340 NRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKS 418 (795)
T ss_dssp GSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTT
T ss_pred ccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCC
Confidence 43221111 0 123688998888876 45566677799999877654332211 1234688898888887
Q ss_pred cceEEEEEecCCcceEEEEECCCCcEEeeee----ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccc--
Q 019482 211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKR----LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR-- 284 (340)
Q Consensus 211 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-- 284 (340)
. +..++.++-|..||..+++...... .....|.++...++|++.+.. .+ .|.+||..+++.......
T Consensus 419 ~-----lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~ 491 (795)
T 4a2l_A 419 L-----VYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEKD 491 (795)
T ss_dssp E-----EEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCTT
T ss_pred E-----EEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEEcccccc
Confidence 2 2344555669999998876432221 224578899988888765544 44 499999888765443211
Q ss_pred --cccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 285 --LHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 285 --~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
......|.++...++|++.+... +.+..|+..
T Consensus 492 ~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~ 525 (795)
T 4a2l_A 492 GTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQE 525 (795)
T ss_dssp CCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEE
T ss_pred ccccCCceEEEEEECCCCCEEEEeC--CceEEEeCC
Confidence 11135789999999998766554 457777764
No 248
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.15 E-value=2.1e-08 Score=78.09 Aligned_cols=187 Identities=11% Similarity=0.016 Sum_probs=128.1
Q ss_pred cCCCC--eeEEEEcCCCCeEEEEecCC--CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeE-EEccCCCc
Q 019482 61 ESEGD--PMTIAVNPSGDDFVCSTTNG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGH 135 (340)
Q Consensus 61 ~h~~~--v~~~~~~~~~~~l~~~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~ 135 (340)
.|... ...+.|+ ++.++.+.+.+| .|+++|+.+++........ .........++++.| +....++.
T Consensus 38 phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~--------~~~FgeGit~~g~~ly~ltw~~~~ 108 (262)
T 3nol_A 38 PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG--------KRYFGEGISDWKDKIVGLTWKNGL 108 (262)
T ss_dssp ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC--------TTCCEEEEEEETTEEEEEESSSSE
T ss_pred cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC--------CccceeEEEEeCCEEEEEEeeCCE
Confidence 35444 4789998 666666777665 8999999999877665321 222222233334444 44456889
Q ss_pred EEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCC----CceeeEEEccCCCc
Q 019482 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD----EKIELCRFSKDGTK 211 (340)
Q Consensus 136 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~ 211 (340)
+.+||..+.+.+.++.... ....+++|++.|+.+..++.|.++|..+.+.+..+..... ..++.+.|. +|+.
T Consensus 109 v~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~l 184 (262)
T 3nol_A 109 GFVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEI 184 (262)
T ss_dssp EEEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEE
Confidence 9999999999887776433 2234446778777777678899999999988887764221 234457776 5642
Q ss_pred ceEEEEEecCCcceEEEEECCCCcEEeeeecc------------CCCeeEEEECCCCCEEEEeeCC
Q 019482 212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLL------------RKPASVLSISLDGKYLAMGSKD 265 (340)
Q Consensus 212 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~------------~~~i~~~~~s~~~~~l~~~~~d 265 (340)
.+..-.++.|.+.|.++++.+..+... ....+.++++|+++.|++.+..
T Consensus 185 -----yan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 185 -----FANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp -----EEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred -----EEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 344456789999999999988776542 1245889999998888777653
No 249
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.13 E-value=2.4e-07 Score=83.98 Aligned_cols=222 Identities=10% Similarity=0.064 Sum_probs=140.4
Q ss_pred CCCEEEEEecCceeeeeeccccCCCC------------------------CCCCCeEEEEEecCCCeEEEccCCC-----
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPPL------------------------QDAGPQKCLSFSVDGSRFAAGGVDG----- 134 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~~------------------------~~~~~v~~~~~~~~~~~l~~~~~dg----- 134 (340)
++.|..+|..+++....+......+. .+......+++.|+...++.+..++
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~ 256 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR 256 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence 57899999999988776643111000 0011123478888888888887665
Q ss_pred --------------cEEEEeCCCCceeeccccCc---------cceeEEEecCCCC---eEEEeeCCCeEEEEEccCCee
Q 019482 135 --------------HLRIMHWPSLRIILDEPKAH---------KSVLDMDFSLDSE---FLATTSTDGSARIWKTEDGVA 188 (340)
Q Consensus 135 --------------~i~~~d~~~~~~~~~~~~~~---------~~i~~~~~~~~~~---~l~~~~~d~~v~iwd~~~~~~ 188 (340)
.|..+|.++++.+..+...+ .+.....+..+|+ .++.++.+|.++++|.++|+.
T Consensus 257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 336 (668)
T 1kv9_A 257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL 336 (668)
T ss_dssp HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence 39999999999887665421 1222223334565 688999999999999999998
Q ss_pred EEEeecCC-----------CCc------------------------eeeEEEccCCCcceEEEE----------------
Q 019482 189 WTFLTRNS-----------DEK------------------------IELCRFSKDGTKPFLFCT---------------- 217 (340)
Q Consensus 189 ~~~~~~~~-----------~~~------------------------v~~~~~~~~~~~~~~~~~---------------- 217 (340)
+....... ..+ -..++++|+...+|+...
T Consensus 337 l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~ 416 (668)
T 1kv9_A 337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR 416 (668)
T ss_dssp EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccc
Confidence 74433111 000 012677777665332110
Q ss_pred ---E------------ecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecc
Q 019482 218 ---V------------QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS 282 (340)
Q Consensus 218 ---~------------~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 282 (340)
. ....++.|..||+.+++.+-...... +.....+...+.++++++.|+.++.||.++++.+..+
T Consensus 417 ~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~ 495 (668)
T 1kv9_A 417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQF 495 (668)
T ss_dssp SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEe
Confidence 0 11235889999999999876655433 3333344556789999999999999999999988766
Q ss_pred cccccccceeeEEEecCCe-EEEEEe
Q 019482 283 KRLHLGTSIALVEFCPTQR-VVLTAS 307 (340)
Q Consensus 283 ~~~~~~~~i~~~~~~~~~~-~l~~~~ 307 (340)
.... ...-.-+.+..+|+ +++.++
T Consensus 496 ~~~~-~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 496 EAQS-GIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp ECSS-CCCSCCEEEEETTEEEEEEEE
T ss_pred cCCC-CcccCceEEEECCEEEEEEEe
Confidence 4332 21223445556776 455444
No 250
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.12 E-value=2.1e-07 Score=74.44 Aligned_cols=228 Identities=8% Similarity=-0.105 Sum_probs=135.2
Q ss_pred CeEEEEecCCCEEEEEecCceeee----eeccccCCCCCCCCCeEEEEEecCCCeEEE-ccCCCcEEEEeCCCCceeecc
Q 019482 76 DDFVCSTTNGGCKLFEVYGGATDI----NLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWPSLRIILDE 150 (340)
Q Consensus 76 ~~l~~~~~d~~i~iw~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~~ 150 (340)
.+|+.+.. +.|+.++++...... ..... ....+..++|++++..|+. -..++.|..+++.........
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~------~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~ 74 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHI------PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII 74 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEE------EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecC------CCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE
Confidence 44555554 358888887653210 01100 1135678999997655554 445688999998765433222
Q ss_pred ccCccceeEEEecCCCCeEE-EeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCC--cceEE
Q 019482 151 PKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD--KALLA 227 (340)
Q Consensus 151 ~~~~~~i~~~~~~~~~~~l~-~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--d~~i~ 227 (340)
.........++++|++..|+ +-...+.|.++++..... ..+..........++++|++..++ ++... .+.|.
T Consensus 75 ~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~i~vd~~~g~ly----v~~~~~~~~~I~ 149 (267)
T 1npe_A 75 RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLY----WTDWNRDNPKIE 149 (267)
T ss_dssp CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEE----EEECCSSSCEEE
T ss_pred ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEEECCCCCccEEEEeeCCCEEE----EEECCCCCcEEE
Confidence 22224678999999765554 444567999999864332 223222224578999999766533 22222 46888
Q ss_pred EEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEE
Q 019482 228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA 306 (340)
Q Consensus 228 i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 306 (340)
.+++..................++++|+++.|+.+. ..+.|..+|+........... ......++.. ++.++++.
T Consensus 150 ~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~---~~~P~gi~~d-~~~lyva~ 225 (267)
T 1npe_A 150 TSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG---LQYPFAVTSY-GKNLYYTD 225 (267)
T ss_dssp EEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC---CCSEEEEEEE-TTEEEEEE
T ss_pred EEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC---CCCceEEEEe-CCEEEEEE
Confidence 888764332111112234578899999877766554 467899999976554333221 1234566654 45555555
Q ss_pred ecCCcEEEEEecC
Q 019482 307 SKEWGAMITKLTV 319 (340)
Q Consensus 307 ~~dg~i~iw~~~~ 319 (340)
...+.|.+++...
T Consensus 226 ~~~~~v~~~d~~~ 238 (267)
T 1npe_A 226 WKTNSVIAMDLAI 238 (267)
T ss_dssp TTTTEEEEEETTT
T ss_pred CCCCeEEEEeCCC
Confidence 5567787777643
No 251
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.09 E-value=3e-06 Score=78.70 Aligned_cols=240 Identities=11% Similarity=0.068 Sum_probs=151.8
Q ss_pred CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 142 (340)
...|.++...++|. |..|+.++-|..|+........ +........-....|.++...++|++ -.|+.++-|..|+..
T Consensus 309 ~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~ 385 (795)
T 4a2l_A 309 QRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKN-IRNIPYKNSLSDNVVSCIVEDKDKNL-WIGTNDGGLNLYNPI 385 (795)
T ss_dssp SSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEE-ECCCTTSSSCSCSSEEEEEECTTSCE-EEEESSSCEEEECTT
T ss_pred CCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceE-EcCCCCCCCCCCCeeEEEEECCCCCE-EEEECCCCeEEEcCC
Confidence 35699999998887 4456665559999876554321 11110000112457999998888864 456667679999987
Q ss_pred CCceeecccc--------CccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeec---CCCCceeeEEEccCCCc
Q 019482 143 SLRIILDEPK--------AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR---NSDEKIELCRFSKDGTK 211 (340)
Q Consensus 143 ~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~ 211 (340)
+++....... ....|.++...++++.|..|+.++-|..+|.++++....... .....|.++...+++.
T Consensus 386 ~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~- 464 (795)
T 4a2l_A 386 TQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN- 464 (795)
T ss_dssp TCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC-
T ss_pred CCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC-
Confidence 6654322111 134688998888887566677777799999887764332210 1234688898888887
Q ss_pred ceEEEEEecCCcceEEEEECCCCcEEeeee------ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecc---
Q 019482 212 PFLFCTVQRGDKALLAVYDISTWNKIGHKR------LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS--- 282 (340)
Q Consensus 212 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~------~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--- 282 (340)
+..++. +-+.+||..+++...... .....|.++...++|++.+.. . +-|..||..+++. ...
T Consensus 465 -----lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~-~~~~~~ 535 (795)
T 4a2l_A 465 -----LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLDI-QKASIL 535 (795)
T ss_dssp -----EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTEE-EECCCS
T ss_pred -----EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCeE-EEecCC
Confidence 344444 458889988765432221 123568899999888766654 4 4589999887765 211
Q ss_pred -cccccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482 283 -KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL 317 (340)
Q Consensus 283 -~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~ 317 (340)
...-....|.++...++|++.++.. . .+..|+.
T Consensus 536 ~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~ 569 (795)
T 4a2l_A 536 PVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNE 569 (795)
T ss_dssp CSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEET
T ss_pred CCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECC
Confidence 0111135789999999998666554 3 5666664
No 252
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.08 E-value=6.1e-08 Score=87.82 Aligned_cols=236 Identities=13% Similarity=0.106 Sum_probs=151.8
Q ss_pred CCeEEEEecCCCEEEEEecCceeeeeeccccCC-CCCC-CCCeEEEEEecCCCeEEEccC------CCcEEEEeCCCCce
Q 019482 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMP-PLQD-AGPQKCLSFSVDGSRFAAGGV------DGHLRIMHWPSLRI 146 (340)
Q Consensus 75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~~~-~~~v~~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~ 146 (340)
+..++.++.|+.|..+|..+++........... .... ..++ . .++ .++++.. +|.|..+|.++++.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~----v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~ 190 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPR----V-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKL 190 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCE----E-ETT-EEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCE----E-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcE
Confidence 557888888999999999999887766432110 0001 1111 1 134 4555543 58999999999998
Q ss_pred eeccccCc---c----------------------------ceeEEEecCCCCeEEEeeCCC-------------------
Q 019482 147 ILDEPKAH---K----------------------------SVLDMDFSLDSEFLATTSTDG------------------- 176 (340)
Q Consensus 147 ~~~~~~~~---~----------------------------~i~~~~~~~~~~~l~~~~~d~------------------- 176 (340)
+..+.... . ....++++|+...++.++.++
T Consensus 191 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~ 270 (668)
T 1kv9_A 191 AWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLS 270 (668)
T ss_dssp EEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence 76653210 0 112467888888888887665
Q ss_pred eEEEEEccCCeeEEEeecCC-C-------CceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCC---
Q 019482 177 SARIWKTEDGVAWTFLTRNS-D-------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK--- 245 (340)
Q Consensus 177 ~v~iwd~~~~~~~~~~~~~~-~-------~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~--- 245 (340)
.|..+|.++++.+-.+...+ . .+.....+..+|+.. -.++.++.++.++++|..+++.+........
T Consensus 271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~--~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~ 348 (668)
T 1kv9_A 271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPR--KVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWA 348 (668)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEE--EEEEECCTTSEEEEEETTTCCEEEEEESSCCCSE
T ss_pred eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEE--EEEEEECCCCEEEEEECCCCCEeccccccccccc
Confidence 49999999999987776431 1 122222333355421 1167788999999999999998743322110
Q ss_pred ---------------------------------CeeEEEECCCCCEEEEe------------------------------
Q 019482 246 ---------------------------------PASVLSISLDGKYLAMG------------------------------ 262 (340)
Q Consensus 246 ---------------------------------~i~~~~~s~~~~~l~~~------------------------------ 262 (340)
.-..++++|+...+++.
T Consensus 349 ~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 428 (668)
T 1kv9_A 349 EKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA 428 (668)
T ss_dssp EEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred cccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccccc
Confidence 01126777876666542
Q ss_pred ------eCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 263 ------SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 263 ------~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
..+|.|..||+.+++.+-.... ..+.....+...+.+++.++.||.++.|+.....
T Consensus 429 ~~~p~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 429 TDVPAAVVSGALLAWDPVKQKAAWKVPY---PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE 490 (668)
T ss_dssp CCCCGGGCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CCCCCCCccceEEEEeCCCCcEEEEccC---CCCCcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence 1247899999999998765432 2345555566678888999999999999986544
No 253
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.05 E-value=5.8e-07 Score=81.48 Aligned_cols=284 Identities=11% Similarity=0.005 Sum_probs=152.6
Q ss_pred EeeeeecCCCccEEEEcCCCCcc---cCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec-C
Q 019482 9 CGSWIKRPENVNLVVLGKSSRAS---SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-N 84 (340)
Q Consensus 9 ~~~w~~~~~~~~~~~~g~~~~~~---~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-d 84 (340)
++++.+. +..+++.|+..... ...+.-.++.+++.......... ....+.....++++.++|+.++.|+. +
T Consensus 190 ~~av~~~--~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~---~~~~~~~~~~~~~~~~~g~lyv~GG~~~ 264 (656)
T 1k3i_A 190 AAAIEPT--SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV---TVTKHDMFCPGISMDGNGQIVVTGGNDA 264 (656)
T ss_dssp EEEEETT--TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE---EECSCCCSSCEEEECTTSCEEEECSSST
T ss_pred eEEEEec--CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc---cCCCCCCccccccCCCCCCEEEeCCCCC
Confidence 3444442 34677777653311 01223356677766655432111 11123334556788889999999884 4
Q ss_pred CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc-CC-----CcEEEEeCCCCceeecc----ccCc
Q 019482 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VD-----GHLRIMHWPSLRIILDE----PKAH 154 (340)
Q Consensus 85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----g~i~~~d~~~~~~~~~~----~~~~ 154 (340)
..+.+||..+.+..... .+.....-.+++..++++.++.|+ .+ ..+.+||..+.+-...- ....
T Consensus 265 ~~v~~yd~~t~~W~~~~------~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~ 338 (656)
T 1k3i_A 265 KKTSLYDSSSDSWIPGP------DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPML 338 (656)
T ss_dssp TCEEEEEGGGTEEEECC------CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGC
T ss_pred CceEEecCcCCceeECC------CCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccc
Confidence 58999999877543221 111222224556667899989888 34 46999999876533210 0000
Q ss_pred cceeEEEecCCCCeEEEeeCC---------CeEEEEEccCCeeEEEeecCCC--------CceeeEEEcc-CCCcceEEE
Q 019482 155 KSVLDMDFSLDSEFLATTSTD---------GSARIWKTEDGVAWTFLTRNSD--------EKIELCRFSK-DGTKPFLFC 216 (340)
Q Consensus 155 ~~i~~~~~~~~~~~l~~~~~d---------~~v~iwd~~~~~~~~~~~~~~~--------~~v~~~~~~~-~~~~~~~~~ 216 (340)
..-....+..++..++.++.+ ..+..||..+............ ..-.++.|.. +++.
T Consensus 339 ~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i----- 413 (656)
T 1k3i_A 339 TADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKI----- 413 (656)
T ss_dssp CCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEE-----
T ss_pred cccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeE-----
Confidence 000012233455555555444 3567888877654332221110 1123344433 4432
Q ss_pred EEecCCcc-----------eEEEEECCCCcEEeee--eccCC-CeeEEEECCCCCEEEEeeCC-----------CcEEEE
Q 019482 217 TVQRGDKA-----------LLAVYDISTWNKIGHK--RLLRK-PASVLSISLDGKYLAMGSKD-----------GDICVV 271 (340)
Q Consensus 217 ~~~~~~d~-----------~i~i~d~~~~~~~~~~--~~~~~-~i~~~~~s~~~~~l~~~~~d-----------g~i~i~ 271 (340)
++.++.+. .+.+||..+..-.... ..... .-.++...|+++.++.|+.+ ..+.+|
T Consensus 414 ~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~y 493 (656)
T 1k3i_A 414 LTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIY 493 (656)
T ss_dssp EEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEE
T ss_pred EEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEE
Confidence 34444321 6888888765533221 11111 23455677899999999864 468999
Q ss_pred eccCceEeecccccccccceeeEEEecCCeEEEEEec
Q 019482 272 DVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK 308 (340)
Q Consensus 272 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 308 (340)
|..+.+-...-.............+.|||++++.||.
T Consensus 494 dp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 494 VPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 9988764432211111112234456789999999985
No 254
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=99.03 E-value=5e-07 Score=77.35 Aligned_cols=239 Identities=5% Similarity=-0.033 Sum_probs=141.7
Q ss_pred CeeEEEEcC-CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-CC----cEEE
Q 019482 65 DPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DG----HLRI 138 (340)
Q Consensus 65 ~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg----~i~~ 138 (340)
.+..++++| ++..|+.+...+.|+.+|+......... . .......++|++++++|+++.. ++ .+..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~-------~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~ 209 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-S-------GLSKVRTICWTHEADSMIITNDQNNNDRPNNYI 209 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-C-------CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-c-------CCCCcceEEEeCCCCEEEEEeCCCCcccceEEE
Confidence 467899998 4556666665577888888776543222 1 2356789999999996665543 22 2333
Q ss_pred EeCCCCcee--eccccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEE
Q 019482 139 MHWPSLRII--LDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (340)
Q Consensus 139 ~d~~~~~~~--~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (340)
++. .+... ..+. .......++++| ++.++++-..++.|..++...+................++|+|+++++
T Consensus 210 ~~~-~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~l--- 284 (430)
T 3tc9_A 210 LTR-ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYA--- 284 (430)
T ss_dssp EEG-GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEE---
T ss_pred EeC-CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEE---
Confidence 442 22221 1111 123457789999 676666666678999999987654332322222357889999999853
Q ss_pred EEEecCCcceEEEEECCC--CcE--Eeeeecc---------------CCCee-EEEEC--------CCCCEEEEeeCCCc
Q 019482 216 CTVQRGDKALLAVYDIST--WNK--IGHKRLL---------------RKPAS-VLSIS--------LDGKYLAMGSKDGD 267 (340)
Q Consensus 216 ~~~~~~~d~~i~i~d~~~--~~~--~~~~~~~---------------~~~i~-~~~~s--------~~~~~l~~~~~dg~ 267 (340)
.++....+.|..++... ++. +..+... -.... .++.. ++|.+.++-...+.
T Consensus 285 -yv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~ 363 (430)
T 3tc9_A 285 -YIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHC 363 (430)
T ss_dssp -EEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTE
T ss_pred -EEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcE
Confidence 35556778899887653 211 1111111 01122 44443 34555555556778
Q ss_pred EEEEeccCceEeecccc------c--c-------cccceeeEEEec-CCeEEEEEecCCcEEEEEec
Q 019482 268 ICVVDVKKMEINHWSKR------L--H-------LGTSIALVEFCP-TQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 268 i~i~d~~~~~~~~~~~~------~--~-------~~~~i~~~~~~~-~~~~l~~~~~dg~i~iw~~~ 318 (340)
|+.++. .+......-. + . .-.....++++| ++.++++-.....|+..+++
T Consensus 364 I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 364 IRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 998883 4544332211 0 0 012478999999 57777776667777777653
No 255
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=99.02 E-value=5e-08 Score=89.75 Aligned_cols=200 Identities=7% Similarity=-0.028 Sum_probs=118.4
Q ss_pred CeEEEEEe-cCCCeEEEccC-C----CcEEEEeCCCC-ceeeccccCccceeEEEecCCCCeEEEeeCC-----CeEEEE
Q 019482 114 PQKCLSFS-VDGSRFAAGGV-D----GHLRIMHWPSL-RIILDEPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIW 181 (340)
Q Consensus 114 ~v~~~~~~-~~~~~l~~~~~-d----g~i~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~v~iw 181 (340)
.+...+|| |||++|+.+.. + ..|+++|+.++ +.+... .......+.|+||++.|+....| ..|+++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~--~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK--VSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC--EEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc--ccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 56789999 99998875432 2 35999999988 632211 11224578999999888877655 368888
Q ss_pred EccCCee--EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc--E--EeeeeccCCCeeEEEECCC
Q 019482 182 KTEDGVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN--K--IGHKRLLRKPASVLSISLD 255 (340)
Q Consensus 182 d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~--~~~~~~~~~~i~~~~~s~~ 255 (340)
++.+++. ...+..........+.|+|||+++++ .........|.++|+.++. . ............++.|+.+
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~--~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g 330 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCI--GSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGT 330 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEE--EEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETT
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEE--EecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeC
Confidence 8876542 22222222234567899999997543 2233456789999998752 2 2222223344455555444
Q ss_pred CCEEEEeeCC----CcEEEEeccCc-eEee-cccccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482 256 GKYLAMGSKD----GDICVVDVKKM-EINH-WSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 256 ~~~l~~~~~d----g~i~i~d~~~~-~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
+.+++....+ ..|..+|+.+. +... .+. ......+..+.+. .+.++++...++..+||-++.
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~-~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD-HSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC-CCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC-CCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 4444444433 25677777642 2221 121 1112245566665 346667777888877777663
No 256
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=99.01 E-value=9.9e-07 Score=75.51 Aligned_cols=242 Identities=7% Similarity=-0.022 Sum_probs=143.6
Q ss_pred CCeeEEEEcCC--CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC---C-cEE
Q 019482 64 GDPMTIAVNPS--GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---G-HLR 137 (340)
Q Consensus 64 ~~v~~~~~~~~--~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g-~i~ 137 (340)
.....++|+|+ +..|+.+...+.|+.++..++....... .......++++++++++++-... . .+.
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~--------~~~~P~giavd~dG~lyVad~~~~~~~~gv~ 210 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT--------NIGQCADVNFTLNGDMVVVDDQSSDTNTGIY 210 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC--------CCSCEEEEEECTTCCEEEEECCSCTTSEEEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec--------CCCCccEEEECCCCCEEEEcCCCCcccceEE
Confidence 34789999985 4455555544789999987766433221 22467899999999944443211 1 133
Q ss_pred EEeCCCCceeeccccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeEEEee-cCCCCceeeEEEccCCCcceEE
Q 019482 138 IMHWPSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLT-RNSDEKIELCRFSKDGTKPFLF 215 (340)
Q Consensus 138 ~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~ 215 (340)
..+...+...............++++| ++.++++-..++.|+.+|..++.....+. .........++|+|+++.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~L--- 287 (433)
T 4hw6_A 211 LFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWA--- 287 (433)
T ss_dssp EECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEE---
T ss_pred EEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEE---
Confidence 333221111000111123456789999 66666565567889999988776533332 2222233469999999853
Q ss_pred EEEecCCcceEEEEECCC--CcE--Eeeeecc---------------CCCeeEEEE---------CCCCCEEEEeeCCCc
Q 019482 216 CTVQRGDKALLAVYDIST--WNK--IGHKRLL---------------RKPASVLSI---------SLDGKYLAMGSKDGD 267 (340)
Q Consensus 216 ~~~~~~~d~~i~i~d~~~--~~~--~~~~~~~---------------~~~i~~~~~---------s~~~~~l~~~~~dg~ 267 (340)
.++....+.|..++... +.. ...+.+. -.....+++ .++|.+.++-...+.
T Consensus 288 -Yvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~ 366 (433)
T 4hw6_A 288 -YIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT 366 (433)
T ss_dssp -EEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE
T ss_pred -EEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE
Confidence 35556678899988652 221 1111111 123566888 777777777677788
Q ss_pred EEEEeccCceEeecccccc---------------cccceeeEEEe-cCCeEEEEEecCCcEEEEEec
Q 019482 268 ICVVDVKKMEINHWSKRLH---------------LGTSIALVEFC-PTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 268 i~i~d~~~~~~~~~~~~~~---------------~~~~i~~~~~~-~~~~~l~~~~~dg~i~iw~~~ 318 (340)
|+.++. ++......-... .-.....++++ ++|.++++-...+.|+..+++
T Consensus 367 I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 367 VRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 999985 454432221100 01246789999 678877777777778777653
No 257
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.97 E-value=2.4e-06 Score=66.95 Aligned_cols=203 Identities=7% Similarity=0.051 Sum_probs=130.6
Q ss_pred EEecCCCCeeEEEEcCCCCeEE-EEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcE
Q 019482 58 VFDESEGDPMTIAVNPSGDDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL 136 (340)
Q Consensus 58 ~~~~h~~~v~~~~~~~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 136 (340)
.+.+-.+.+..++|+|++..|+ +...++.|...|.. ++....+.. ........+++.+++.++++.-.++.+
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l------~g~~D~EGIa~~~~g~~~vs~E~~~~l 93 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL------DFVKDLETIEYIGDNQFVISDERDYAI 93 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC------SSCSSEEEEEECSTTEEEEEETTTTEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec------CCCCChHHeEEeCCCEEEEEECCCCcE
Confidence 3445567899999999877555 46667778888876 554444321 122467889999988776766567889
Q ss_pred EEEeCCCCcee---ecc------ccCccceeEEEecCCCCeEEEeeCCCeEEEEEccC---CeeEEEee------cCCCC
Q 019482 137 RIMHWPSLRII---LDE------PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED---GVAWTFLT------RNSDE 198 (340)
Q Consensus 137 ~~~d~~~~~~~---~~~------~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~---~~~~~~~~------~~~~~ 198 (340)
.++++.....+ ... .........++|+|.++.|.++.......+|.++. ...+..+. .....
T Consensus 94 ~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~ 173 (255)
T 3qqz_A 94 YVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLD 173 (255)
T ss_dssp EEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred EEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccC
Confidence 99887654321 111 11223578999999887777766555555665541 11122221 11223
Q ss_pred ceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC---------CCeeEEEECCCCCEEEEeeCCCcEE
Q 019482 199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR---------KPASVLSISLDGKYLAMGSKDGDIC 269 (340)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~~~~~dg~i~ 269 (340)
.+..++++|....+ ++.+.....+..+|.. ++.+..+.... .....++|.++|+ |+..++-+.++
T Consensus 174 d~S~l~~dp~tg~l----liLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y 247 (255)
T 3qqz_A 174 DVSGAEFNQQKNTL----LVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFY 247 (255)
T ss_dssp CCCEEEEETTTTEE----EEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEE
T ss_pred CceeEEEcCCCCeE----EEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEE
Confidence 47899999987764 4556778889999976 55555554432 2567899999997 44557777777
Q ss_pred EEec
Q 019482 270 VVDV 273 (340)
Q Consensus 270 i~d~ 273 (340)
.|.-
T Consensus 248 ~f~~ 251 (255)
T 3qqz_A 248 RFTP 251 (255)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7654
No 258
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.96 E-value=5.9e-07 Score=69.41 Aligned_cols=183 Identities=7% Similarity=-0.052 Sum_probs=122.7
Q ss_pred CeeEEEEcCCCCeEEEEecC--CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482 65 DPMTIAVNPSGDDFVCSTTN--GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (340)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 142 (340)
-...+.|++ +..+.+.+.. ..|+.+|+.+++......... ...-..+++. .++.......++.+.+||..
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~------~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~ 93 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP------PYFGAGIVAW-RDRLIQLTWRNHEGFVYDLA 93 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT------TCCEEEEEEE-TTEEEEEESSSSEEEEEETT
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC------CcceeEEEEe-CCEEEEEEeeCCEEEEEECC
Confidence 366899986 5555555554 389999999998776653211 1111234443 23344455678999999999
Q ss_pred CCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCC----CceeeEEEccCCCcceEEEEE
Q 019482 143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD----EKIELCRFSKDGTKPFLFCTV 218 (340)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~ 218 (340)
+.+.+.++...... ..+ .++++.|+.+..++.|.++|.++.+.+..+..... ..++.+.+. +|+. .+
T Consensus 94 tl~~~~ti~~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l-----ya 164 (243)
T 3mbr_X 94 TLTPRARFRYPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL-----LA 164 (243)
T ss_dssp TTEEEEEEECSSCC-CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE-----EE
T ss_pred cCcEEEEEeCCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE-----EE
Confidence 99988777654322 333 45677777777788999999999988887764221 234566665 5542 34
Q ss_pred ecCCcceEEEEECCCCcEEeeeecc-------------CCCeeEEEECCCCCEEEEeeC
Q 019482 219 QRGDKALLAVYDISTWNKIGHKRLL-------------RKPASVLSISLDGKYLAMGSK 264 (340)
Q Consensus 219 ~~~~d~~i~i~d~~~~~~~~~~~~~-------------~~~i~~~~~s~~~~~l~~~~~ 264 (340)
..-.+..|.+.|.++++.+..+... ..-.+.++++|+++.|++.+.
T Consensus 165 nvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 165 NVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 4446779999999999988776532 134688999998877777664
No 259
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.95 E-value=7.3e-06 Score=75.96 Aligned_cols=242 Identities=12% Similarity=0.034 Sum_probs=146.1
Q ss_pred CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC
Q 019482 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS 143 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 143 (340)
..|.++...++|.+.+ ++.+| +.+||..+.+..................|.++...++|. |..|+..+-|.++|..+
T Consensus 211 ~~i~~i~~d~~g~lwi-gt~~G-l~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWI-GTSKG-LALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQ 287 (781)
T ss_dssp SSEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTC
T ss_pred CceeEEEEcCCCCEEE-EeCCc-HheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCC
Confidence 5688999888887555 44455 999998766543211110000001246789999888885 44455545688899876
Q ss_pred Cceeeccc--------------cCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee--------cCCCCcee
Q 019482 144 LRIILDEP--------------KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT--------RNSDEKIE 201 (340)
Q Consensus 144 ~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--------~~~~~~v~ 201 (340)
+....... -....|.++...++|. |..|+.++-|..++...+....... ......|.
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 366 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS 366 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE
Confidence 54321111 1224688998888876 5556666778888876554322111 11234688
Q ss_pred eEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee---eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE
Q 019482 202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI 278 (340)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 278 (340)
++...+++. +..++.++-|..||..++...... ......|.++...++|.+.+ |+.++-|..+|..+++.
T Consensus 367 ~i~~d~~g~------lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~ 439 (781)
T 3v9f_A 367 SVCDDGQGK------LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKF 439 (781)
T ss_dssp EEEECTTSC------EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEE
T ss_pred EEEEcCCCC------EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcE
Confidence 898888887 455565566888998765432211 12235688888888876554 66666799999887765
Q ss_pred eecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 279 NHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 279 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
............|.++...++|++.+... +.+..++..
T Consensus 440 ~~~~~~~~~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~ 477 (781)
T 3v9f_A 440 QIIELEKNELLDVRVFYEDKNKKIWIGTH--AGVFVIDLA 477 (781)
T ss_dssp EECCSTTTCCCCEEEEEECTTSEEEEEET--TEEEEEESS
T ss_pred EEeccCCCCCCeEEEEEECCCCCEEEEEC--CceEEEeCC
Confidence 44321111135789998888888665543 457777654
No 260
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.95 E-value=3.3e-07 Score=71.43 Aligned_cols=181 Identities=8% Similarity=-0.056 Sum_probs=124.2
Q ss_pred eeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc
Q 019482 66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR 145 (340)
Q Consensus 66 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 145 (340)
...+.|+ ++.++.+.+.+|.|+++|+++++..... .. ....-..+++.. ++..+....++.+.+||..+.+
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~------~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~ 127 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL------GNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQ 127 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC------TTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC------CCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCc
Confidence 4688887 4556667778888999999999877665 21 111113355543 2344445578999999999999
Q ss_pred eeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCC----CceeeEEEccCCCcceEEEEEecC
Q 019482 146 IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD----EKIELCRFSKDGTKPFLFCTVQRG 221 (340)
Q Consensus 146 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~ 221 (340)
.+.++...... ..++ +|++.|+.+..++.|.++|.++.+.+..+.-... ..++.+.|. +|+. .+..-
T Consensus 128 ~~~ti~~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~l-----yanvw 198 (268)
T 3nok_A 128 RERTTRYSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVI-----YANIW 198 (268)
T ss_dssp EEEEEECSSCC-CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE-----EEEET
T ss_pred EEEEEeCCCce-eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEE-----EEEEC
Confidence 88777643322 3333 5678777777789999999999988887763221 134567776 6642 34445
Q ss_pred CcceEEEEECCCCcEEeeeecc-------------CCCeeEEEECCCCCEEEEeeC
Q 019482 222 DKALLAVYDISTWNKIGHKRLL-------------RKPASVLSISLDGKYLAMGSK 264 (340)
Q Consensus 222 ~d~~i~i~d~~~~~~~~~~~~~-------------~~~i~~~~~s~~~~~l~~~~~ 264 (340)
.+..|.+.|.++++.+..+... ..-.+.++++|+++.|++.+.
T Consensus 199 ~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 199 HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 6789999999999987776542 135688999998766666554
No 261
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.93 E-value=1.1e-05 Score=66.17 Aligned_cols=226 Identities=8% Similarity=-0.085 Sum_probs=132.3
Q ss_pred eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEE-ccCCCcEEEEeCCC----Cceeeccc
Q 019482 77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWPS----LRIILDEP 151 (340)
Q Consensus 77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~~d~~~----~~~~~~~~ 151 (340)
+|+.+..+ .|+..|+.+.+..... .....+..++|++++..|+. -...+.|..+++.. ......+.
T Consensus 3 ~ll~~~~~-~I~~i~~~~~~~~~~~--------~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~ 73 (316)
T 1ijq_A 3 YLFFTNRH-EVRKMTLDRSEYTSLI--------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 73 (316)
T ss_dssp EEEEECBS-SEEEEETTSCCCEEEE--------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred EEEEECCC-eEEEEECCCcceEehh--------cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe
Confidence 44554444 4888888776543222 12356789999986655544 44568899999875 22121122
Q ss_pred cCccceeEEEecCCCC-eEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCC-cceEEEE
Q 019482 152 KAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-KALLAVY 229 (340)
Q Consensus 152 ~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-d~~i~i~ 229 (340)
..-.....+++.+.+. +.++-...+.|.+.++..... ..+..........++++|.+..+| .+... .+.|..+
T Consensus 74 ~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~iavdp~~g~ly----~~d~~~~~~I~~~ 148 (316)
T 1ijq_A 74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMY----WTDWGTPAKIKKG 148 (316)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEE----EEECSSSCEEEEE
T ss_pred CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce-EEEEECCCCCcceEEeCCCCCEEE----EEccCCCCeEEEE
Confidence 2223557889987544 445555678999999875433 333222234678999999777533 22222 3788888
Q ss_pred ECCCCcEEeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEec
Q 019482 230 DISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK 308 (340)
Q Consensus 230 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 308 (340)
++............-.....++++|++..|+.+. ..+.|..+|+...................++++. .+.++++-..
T Consensus 149 ~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~ 227 (316)
T 1ijq_A 149 GLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDII 227 (316)
T ss_dssp ETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETT
T ss_pred cCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECC
Confidence 8864332212222234578899999877776664 4578999998753322221111111245677775 4566666666
Q ss_pred CCcEEEEEe
Q 019482 309 EWGAMITKL 317 (340)
Q Consensus 309 dg~i~iw~~ 317 (340)
.+.|..++.
T Consensus 228 ~~~V~~~~~ 236 (316)
T 1ijq_A 228 NEAIFSANR 236 (316)
T ss_dssp TTEEEEEET
T ss_pred CCeEEEEeC
Confidence 677766664
No 262
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.93 E-value=2.1e-06 Score=76.26 Aligned_cols=228 Identities=11% Similarity=0.056 Sum_probs=137.2
Q ss_pred CeEEEEec------CCCEEEEEecCceeeeeeccccCC------C-C----------------------CC-CC-CeEEE
Q 019482 76 DDFVCSTT------NGGCKLFEVYGGATDINLLAKKMP------P-L----------------------QD-AG-PQKCL 118 (340)
Q Consensus 76 ~~l~~~~~------d~~i~iw~~~~~~~~~~~~~~~~~------~-~----------------------~~-~~-~v~~~ 118 (340)
..+++++. ++.|..+|..+++...+....... + . .+ .. ....+
T Consensus 161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~ 240 (571)
T 2ad6_A 161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY 240 (571)
T ss_dssp TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence 34555554 788999999998877655432110 0 0 00 00 01235
Q ss_pred EEecCCCeEEEccCC----------------CcEEEEeCCCCceeeccccCc---------cceeEEEecCCCC---eEE
Q 019482 119 SFSVDGSRFAAGGVD----------------GHLRIMHWPSLRIILDEPKAH---------KSVLDMDFSLDSE---FLA 170 (340)
Q Consensus 119 ~~~~~~~~l~~~~~d----------------g~i~~~d~~~~~~~~~~~~~~---------~~i~~~~~~~~~~---~l~ 170 (340)
++.++...++.+..+ +.|..+|.++++.+..+.... ....-+...++|+ .++
T Consensus 241 a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~ 320 (571)
T 2ad6_A 241 AYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLS 320 (571)
T ss_dssp EEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEE
T ss_pred EEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEE
Confidence 666766666655432 359999999999877654321 1111122234674 577
Q ss_pred EeeCCCeEEEEEccCCeeEEEeecCCC------------Cce--------------------------eeEEEccCCCcc
Q 019482 171 TTSTDGSARIWKTEDGVAWTFLTRNSD------------EKI--------------------------ELCRFSKDGTKP 212 (340)
Q Consensus 171 ~~~~d~~v~iwd~~~~~~~~~~~~~~~------------~~v--------------------------~~~~~~~~~~~~ 212 (340)
.++.+|.++++|.++++.+........ .++ ..++++|+...+
T Consensus 321 ~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~ 400 (571)
T 2ad6_A 321 HIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTL 400 (571)
T ss_dssp EECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEE
T ss_pred EeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEE
Confidence 888999999999999998776543210 011 245778877654
Q ss_pred eEEEEE------------------ec--------------CCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEE
Q 019482 213 FLFCTV------------------QR--------------GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (340)
Q Consensus 213 ~~~~~~------------------~~--------------~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 260 (340)
++...- .+ ..++.|..||..+++.+-...... .+....+...+..++
T Consensus 401 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~ 479 (571)
T 2ad6_A 401 YAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVW 479 (571)
T ss_dssp EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEE
T ss_pred EEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEE
Confidence 432110 00 246899999999999876655432 222222333466788
Q ss_pred EeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEE
Q 019482 261 MGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLT 305 (340)
Q Consensus 261 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 305 (340)
+++.||.|+.+|.++++.+..+.... ...-.-+.+..+|+.++.
T Consensus 480 ~g~~dg~l~a~D~~tG~~lw~~~~~~-~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 480 YATLDGYLKALDNKDGKELWNFKMPS-GGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp EECTTSEEEEEETTTCCEEEEEECSS-CCCSCCEEEEETTEEEEE
T ss_pred EEcCCCeEEEEECCCCCEEEEEeCCC-CcEeeeEEEEECCEEEEE
Confidence 89999999999999999887665433 112233446678865443
No 263
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.93 E-value=8.4e-06 Score=75.56 Aligned_cols=244 Identities=10% Similarity=0.016 Sum_probs=147.8
Q ss_pred CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeecccc--CCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEe
Q 019482 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKK--MPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH 140 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d 140 (340)
...|.++...++|. |..|+.++-|..++.............. ....-....|.++...+++.+ ..|+.++-|..|+
T Consensus 312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~ 389 (781)
T 3v9f_A 312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFE 389 (781)
T ss_dssp SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEE
T ss_pred CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEE
Confidence 45699999998886 5556655559999876554322111000 000112357899998887764 4556556688899
Q ss_pred CCCCceeecc---ccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee-cCCCCceeeEEEccCCCcceEEE
Q 019482 141 WPSLRIILDE---PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT-RNSDEKIELCRFSKDGTKPFLFC 216 (340)
Q Consensus 141 ~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~ 216 (340)
..++...... ......|.++...+++.+. .|+.++-+..+|.++++...... ......|.++...+++.
T Consensus 390 ~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~------ 462 (781)
T 3v9f_A 390 NGKRVAIYNKENRELLSNSVLCSLKDSEGNLW-FGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK------ 462 (781)
T ss_dssp TTEEEEECC-----CCCSBEEEEEECTTSCEE-EEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE------
T ss_pred CCCCeEEEccCCCCCCCcceEEEEECCCCCEE-EEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC------
Confidence 7654332211 1123468888888777654 46666778999987765432211 11235688888888877
Q ss_pred EEecCCcceEEEEECCCCcEEeeeecc-----CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc-ccccccc
Q 019482 217 TVQRGDKALLAVYDISTWNKIGHKRLL-----RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK-RLHLGTS 290 (340)
Q Consensus 217 ~~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~ 290 (340)
+..++. +-|..||..+++........ ...|.++...++|++.+. +.++-|..||..+++...... ..-....
T Consensus 463 lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~~~~~~~~l~~~~ 540 (781)
T 3v9f_A 463 IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQLVRKFNQYEGFCSNT 540 (781)
T ss_dssp EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCEEEEECTTTTCSCSC
T ss_pred EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCeEEEccCCCCCCCCe
Confidence 333444 45889998876543222222 356889999888876554 443448889987765443221 1111357
Q ss_pred eeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 291 IALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 291 i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
|.++...++|++.++.. +|.+..|+..
T Consensus 541 i~~i~~d~~g~lWi~T~-~Glv~~~d~~ 567 (781)
T 3v9f_A 541 INQIYRSSKGQMWLATG-EGLVCFPSAR 567 (781)
T ss_dssp EEEEEECTTSCEEEEET-TEEEEESCTT
T ss_pred eEEEEECCCCCEEEEEC-CCceEEECCC
Confidence 88999988988666554 5543666543
No 264
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.92 E-value=7.4e-07 Score=79.16 Aligned_cols=237 Identities=10% Similarity=-0.014 Sum_probs=145.0
Q ss_pred CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeE-EEEEecCCCeEEEccC------CCcEEEEeCCCCcee
Q 019482 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK-CLSFSVDGSRFAAGGV------DGHLRIMHWPSLRII 147 (340)
Q Consensus 75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~ 147 (340)
+..++.++.|+.+..+|..+++...+....... ....+. .... .++ .+++++. ++.|..+|.++++.+
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~---~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 189 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPK---VGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELK 189 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGG---GTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCC---ccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEE
Confidence 567888888999999999998877655322100 000111 0011 144 4555544 789999999999887
Q ss_pred eccccCccc--------------------------------------eeEEEecCCCCeEEEeeCC--------------
Q 019482 148 LDEPKAHKS--------------------------------------VLDMDFSLDSEFLATTSTD-------------- 175 (340)
Q Consensus 148 ~~~~~~~~~--------------------------------------i~~~~~~~~~~~l~~~~~d-------------- 175 (340)
.++...... ...+++.++...++.++.+
T Consensus 190 W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~ 269 (571)
T 2ad6_A 190 WRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNK 269 (571)
T ss_dssp EEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred EEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCce
Confidence 654322110 0235666765666655432
Q ss_pred --CeEEEEEccCCeeEEEeecCCC-C----ceee---EEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC-
Q 019482 176 --GSARIWKTEDGVAWTFLTRNSD-E----KIEL---CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR- 244 (340)
Q Consensus 176 --~~v~iwd~~~~~~~~~~~~~~~-~----~v~~---~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~- 244 (340)
+.|..+|.++++.+-.+..... . .+.. +...++|+... .++.+..++.+.++|..+++.+.......
T Consensus 270 y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~--~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~ 347 (571)
T 2ad6_A 270 WTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTP--LLSHIDRNGILYTLNRENGNLIVAEKVDPA 347 (571)
T ss_dssp TTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEE--EEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred eEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEE--EEEEeCCCcEEEEEECCCCCEEeeecccCC
Confidence 3699999999998877753221 0 1111 22224564211 14567889999999999998876554321
Q ss_pred ------------CCe--------------------------eEEEECCCCCEEEEee-----------------------
Q 019482 245 ------------KPA--------------------------SVLSISLDGKYLAMGS----------------------- 263 (340)
Q Consensus 245 ------------~~i--------------------------~~~~~s~~~~~l~~~~----------------------- 263 (340)
.++ ..++++|+..++++..
T Consensus 348 ~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~ 427 (571)
T 2ad6_A 348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGA 427 (571)
T ss_dssp CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred ccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccc
Confidence 111 2357888877777653
Q ss_pred --------------CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 264 --------------KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 264 --------------~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
.+|.|..||+.+++.+-.... ..++.+..+...+..++.++.||.++.+|....+
T Consensus 428 ~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~---~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 428 TLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE---KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp EEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE---SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cceeccCccccCCCCCCeEEEEECCCCCEEEEecC---CCCccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence 347899999999988765432 2234443444455667778899999999876544
No 265
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.92 E-value=3.6e-06 Score=74.83 Aligned_cols=243 Identities=10% Similarity=0.037 Sum_probs=145.4
Q ss_pred EEEcCCCCe----EEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeE-EEEEecCCCeEEEcc------CCCcEE
Q 019482 69 IAVNPSGDD----FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK-CLSFSVDGSRFAAGG------VDGHLR 137 (340)
Q Consensus 69 ~~~~~~~~~----l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~------~dg~i~ 137 (340)
++++|.+.. ++.++.|+.+..+|..+++...+....... ....+. .... .++ .+++++ .+|.|+
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~---~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~ 185 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIK---VGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLT 185 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGG---GTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCC---ccceeecCCEE-ECC-EEEEEecccccCCCCeEE
Confidence 455444444 888888999999999998877665321100 000111 0011 144 455554 379999
Q ss_pred EEeCCCCceeeccccCccc-------------------------------------e-eEEEecCCCCeEEEeeCC----
Q 019482 138 IMHWPSLRIILDEPKAHKS-------------------------------------V-LDMDFSLDSEFLATTSTD---- 175 (340)
Q Consensus 138 ~~d~~~~~~~~~~~~~~~~-------------------------------------i-~~~~~~~~~~~l~~~~~d---- 175 (340)
.+|.++++.+.++...... + ..+++.++..+++.+..+
T Consensus 186 A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~ 265 (599)
T 1w6s_A 186 AYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPW 265 (599)
T ss_dssp EEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCS
T ss_pred EEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccc
Confidence 9999999987655432111 0 134566766777766654
Q ss_pred ------------CeEEEEEccCCeeEEEeecCCCC--------ceeeEEEc-cCCCcceEEEEEecCCcceEEEEECCCC
Q 019482 176 ------------GSARIWKTEDGVAWTFLTRNSDE--------KIELCRFS-KDGTKPFLFCTVQRGDKALLAVYDISTW 234 (340)
Q Consensus 176 ------------~~v~iwd~~~~~~~~~~~~~~~~--------~v~~~~~~-~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 234 (340)
+.|..+|.++++.+-.++..+.. ...-+... .+|+... .++.++.++.+.++|.+++
T Consensus 266 ~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~--~v~~~~~~G~l~~lD~~tG 343 (599)
T 1w6s_A 266 NETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARK--LLTHPDRNGIVYTLDRTDG 343 (599)
T ss_dssp CGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEE--EEEEECTTSEEEEEETTTC
T ss_pred cCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEE--EEEEECCCcEEEEEECCCC
Confidence 48999999999998777643221 01112222 4564211 1566788999999999999
Q ss_pred cEEeeeeccC-------------CC--------------------------eeEEEECCCCCEEEEee------------
Q 019482 235 NKIGHKRLLR-------------KP--------------------------ASVLSISLDGKYLAMGS------------ 263 (340)
Q Consensus 235 ~~~~~~~~~~-------------~~--------------------------i~~~~~s~~~~~l~~~~------------ 263 (340)
+.+....... .+ -..++++|+..++++..
T Consensus 344 ~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~ 423 (599)
T 1w6s_A 344 ALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFML 423 (599)
T ss_dssp CEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCC
T ss_pred CEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccc
Confidence 9876544211 01 12456777666655421
Q ss_pred ---------------------------CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482 264 ---------------------------KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK 316 (340)
Q Consensus 264 ---------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~ 316 (340)
.+|.|..||+.+++.+-..... .+..+-.....+.+++.++.||.++.+|
T Consensus 424 ~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagg~vf~gt~dg~l~A~D 500 (599)
T 1w6s_A 424 PYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER---FAVWGGTMATAGDLVFYGTLDGYLKARD 500 (599)
T ss_dssp CCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred cccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC---CCccCcceEecCCEEEEECCCCeEEEEE
Confidence 3478999999999877554321 2232222333556677788899888888
Q ss_pred ecCCC
Q 019482 317 LTVPA 321 (340)
Q Consensus 317 ~~~~~ 321 (340)
.+..+
T Consensus 501 ~~tG~ 505 (599)
T 1w6s_A 501 SDTGD 505 (599)
T ss_dssp TTTCC
T ss_pred CCCCC
Confidence 76544
No 266
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.90 E-value=1.5e-05 Score=66.22 Aligned_cols=235 Identities=8% Similarity=-0.087 Sum_probs=139.8
Q ss_pred CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEc-cCCCcEEEEeCC
Q 019482 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWP 142 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~ 142 (340)
+.-.|.+..++ .+|+.+... .|+..++......... .....+..++|++....|+.+ ...+.|..+++.
T Consensus 34 d~~~C~~~~~~-~~ll~~~~~-~I~~i~~~g~~~~~~~--------~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~ 103 (349)
T 3v64_C 34 DRRSCKALGPE-PVLLFANRI-DIRQVLPHRSEYTLLL--------NNLENAIALDFHHRRELVFWSDVTLDRILRANLN 103 (349)
T ss_dssp TSSCEEESSSC-CEEEEECBS-CEEEECTTSCCEEEEE--------CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCcccccccC-ceeEeeccc-ceEEEeCCCCeeEEee--------cCCCceEEEEEeccccEEEEEeccCCceEEEecC
Confidence 34456666663 345544443 4877777655432221 122457899999866555544 456789999987
Q ss_pred CCceeeccccCccceeEEEecCCC-CeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecC
Q 019482 143 SLRIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG 221 (340)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 221 (340)
.................+++.+.+ +++++-...+.|.+.++..... ..+..........++++|.+..+| .+..
T Consensus 104 g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~l~~P~~iavdp~~g~ly----~td~ 178 (349)
T 3v64_C 104 GSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIY----WTDW 178 (349)
T ss_dssp SCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECTTCSCEEEEEEETTTTEEE----EEEC
T ss_pred CCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-EEEEeCCCCCcceEEEecCcCeEE----Eecc
Confidence 654333222223355788998854 4445555678999999875433 333322334578999999776532 3333
Q ss_pred Cc-ceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceEeecccccccccceeeEEEecC
Q 019482 222 DK-ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (340)
Q Consensus 222 ~d-~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~ 299 (340)
.. +.|..+++............-...+.++++|++..|+.+. ..+.|..+|+........+. .. .....++++ ..
T Consensus 179 ~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~-~~-~~~P~giav-~~ 255 (349)
T 3v64_C 179 GNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS-QG-LPHPFAITV-FE 255 (349)
T ss_dssp SSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SS-CSSEEEEEE-ET
T ss_pred CCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe-CC-CCCceEEEE-EC
Confidence 44 7899998875433222222234568899999777666664 46789999987543222221 11 234677787 45
Q ss_pred CeEEEEEecCCcEEEEE
Q 019482 300 QRVVLTASKEWGAMITK 316 (340)
Q Consensus 300 ~~~l~~~~~dg~i~iw~ 316 (340)
+.++.+-...+.|...+
T Consensus 256 ~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 256 DSLYWTDWHTKSINSAN 272 (349)
T ss_dssp TEEEEEETTTTEEEEEE
T ss_pred CEEEEecCCCCeEEEEE
Confidence 56566655566665554
No 267
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.90 E-value=7.5e-06 Score=69.06 Aligned_cols=233 Identities=8% Similarity=-0.083 Sum_probs=138.6
Q ss_pred eeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEE-EccCCCcEEEEeCCCC
Q 019482 66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRIMHWPSL 144 (340)
Q Consensus 66 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~ 144 (340)
-.+.+..+ ..+|+.+.. ..|+..++......... .....+..++|.+....|+ +-...+.|..+++...
T Consensus 79 ~~C~~~~~-~~~l~~~~~-~~I~~i~~~~~~~~~~~--------~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~ 148 (386)
T 3v65_B 79 RSCKALGP-EPVLLFANR-IDIRQVLPHRSEYTLLL--------NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGS 148 (386)
T ss_dssp SCEEECSS-CCEEEEECB-SCEEEECTTSCCCEEEE--------CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CeECCccc-cceeEeecC-ccceeeccCCCcEEEEe--------cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence 34555544 334554444 44888887665432221 1234578999998655554 4445678999998765
Q ss_pred ceeeccccCccceeEEEecCCCC-eEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCc
Q 019482 145 RIILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK 223 (340)
Q Consensus 145 ~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d 223 (340)
...............+++.+.+. ++++-...+.|.+.++..... ..+..........++++|.+..+| .+....
T Consensus 149 ~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~-~~l~~~~l~~P~giavdp~~g~ly----~td~~~ 223 (386)
T 3v65_B 149 NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIY----WTDWGN 223 (386)
T ss_dssp CEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-EEEECSSCSCEEEEEEETTTTEEE----EEECSS
T ss_pred CcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-EEeecCCCCCCcEEEEEcCCCeEE----EeccCC
Confidence 43332222233557788988544 445555567888888764433 333322334678999999877643 333334
Q ss_pred -ceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceEeecccccccccceeeEEEecCCe
Q 019482 224 -ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (340)
Q Consensus 224 -~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 301 (340)
+.|..+++............-...+.++++|++..|+.+. ..+.|..+|+........+. .. .....++++ ..+.
T Consensus 224 ~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-~~-~~~P~giav-~~~~ 300 (386)
T 3v65_B 224 TPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS-QG-LPHPFAITV-FEDS 300 (386)
T ss_dssp SCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC-SS-CSSEEEEEE-ETTE
T ss_pred CCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE-CC-CCCceEEEE-ECCE
Confidence 7899998875443322222234568899998777666654 46789999987543322221 11 235677888 4556
Q ss_pred EEEEEecCCcEEEEE
Q 019482 302 VVLTASKEWGAMITK 316 (340)
Q Consensus 302 ~l~~~~~dg~i~iw~ 316 (340)
++.+-...+.|..++
T Consensus 301 ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 301 LYWTDWHTKSINSAN 315 (386)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEeeCCCCeEEEEE
Confidence 666665666666655
No 268
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.88 E-value=3.5e-07 Score=75.32 Aligned_cols=184 Identities=13% Similarity=0.063 Sum_probs=114.8
Q ss_pred CeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccc-------------------cCccceeEEEecC-CCCeEEEee
Q 019482 114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP-------------------KAHKSVLDMDFSL-DSEFLATTS 173 (340)
Q Consensus 114 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-------------------~~~~~i~~~~~~~-~~~~l~~~~ 173 (340)
...+++|.+++++++++..++.|..|+..+++...... .....+..+++.+ +++ |+.+.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEE
Confidence 34678899999878888888999999987654321110 0012478899998 565 45554
Q ss_pred CCCeEEEEEccCCeeEEEeec----CCCCceeeEEEcc-CCCcceEEEEEec-----------------CCcceEEEEEC
Q 019482 174 TDGSARIWKTEDGVAWTFLTR----NSDEKIELCRFSK-DGTKPFLFCTVQR-----------------GDKALLAVYDI 231 (340)
Q Consensus 174 ~d~~v~iwd~~~~~~~~~~~~----~~~~~v~~~~~~~-~~~~~~~~~~~~~-----------------~~d~~i~i~d~ 231 (340)
..+.+..+|..+++. ..+.. ........+++.+ +|.. .++. ..++.|..||.
T Consensus 99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l-----~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 172 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIV-----YFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP 172 (322)
T ss_dssp TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCE-----EEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEE-----EEECCcccccccccceehcccCCCceEEEEeC
Confidence 455688888765532 22221 1112467899999 8863 2221 12477999998
Q ss_pred CCCcEEeeeeccCCCeeEEEECCCCCEEEEe-eCCCcEEEEeccCce--EeecccccccccceeeEEEecCCeEEEEEec
Q 019482 232 STWNKIGHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDVKKME--INHWSKRLHLGTSIALVEFCPTQRVVLTASK 308 (340)
Q Consensus 232 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 308 (340)
.+++....... ......++++|+|+.|+++ ..++.|..|++.... ....+.. . .. ...+++.++|++.++...
T Consensus 173 ~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~-~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 173 STKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-I-PN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp TTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-C-SS-EEEEEECTTSCEEEEEEE
T ss_pred CCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-C-CC-CCCeEECCCCCEEEEecC
Confidence 77664322222 2345679999999877666 456889999987521 0111111 1 22 678999999987766644
No 269
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.87 E-value=1.5e-06 Score=78.87 Aligned_cols=247 Identities=12% Similarity=0.098 Sum_probs=137.5
Q ss_pred eEEEEcC-CCCeEEEEecCC-----------CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-C
Q 019482 67 MTIAVNP-SGDDFVCSTTNG-----------GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-D 133 (340)
Q Consensus 67 ~~~~~~~-~~~~l~~~~~d~-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d 133 (340)
...++.| +++.++.|+.+. .+.+||+.+++....... . ..+.....++++.++++.++.|+. +
T Consensus 189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~-~---~~~~~~~~~~~~~~~g~lyv~GG~~~ 264 (656)
T 1k3i_A 189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT-V---TKHDMFCPGISMDGNGQIVVTGGNDA 264 (656)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE-E---CSCCCSSCEEEECTTSCEEEECSSST
T ss_pred eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCccc-C---CCCCCccccccCCCCCCEEEeCCCCC
Confidence 3667777 888888877543 578898887654321111 0 012233445778889999999884 4
Q ss_pred CcEEEEeCCCCceeeccccCc-cceeEEEecCCCCeEEEee-CC-----CeEEEEEccCCeeEEEeecC----CCCceee
Q 019482 134 GHLRIMHWPSLRIILDEPKAH-KSVLDMDFSLDSEFLATTS-TD-----GSARIWKTEDGVAWTFLTRN----SDEKIEL 202 (340)
Q Consensus 134 g~i~~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~-~d-----~~v~iwd~~~~~~~~~~~~~----~~~~v~~ 202 (340)
..+.+||..+.+-...-.... ..-.+++..+++++++.|+ .+ ..+.+||..+++-.. +... ....-..
T Consensus 265 ~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~-~~~~~~~p~~~~~~~ 343 (656)
T 1k3i_A 265 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPNAKVNPMLTADKQ 343 (656)
T ss_dssp TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETTSCSGGGCCCCTT
T ss_pred CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCccee-CCCcccccccccccc
Confidence 579999988765332211111 1223455667899999988 34 579999998765322 2100 0000001
Q ss_pred EEEccCCCcceEEE-----EEecCCcceEEEEECCCCcEEeeeeccC---------CCeeEEEEC-CCCCEEEEeeCCC-
Q 019482 203 CRFSKDGTKPFLFC-----TVQRGDKALLAVYDISTWNKIGHKRLLR---------KPASVLSIS-LDGKYLAMGSKDG- 266 (340)
Q Consensus 203 ~~~~~~~~~~~~~~-----~~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~s-~~~~~l~~~~~dg- 266 (340)
..+..++.. +++. ....+....+..||..+..-........ ..-.++.+. .++++++.|+.++
T Consensus 344 ~~~~~~~~i-yv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~ 422 (656)
T 1k3i_A 344 GLYRSDNHA-WLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY 422 (656)
T ss_dssp GGGTTTCSC-CEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSS
T ss_pred ceeecCCce-EEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCC
Confidence 112233332 1110 1112234567889988765332222111 122344443 3778888887542
Q ss_pred ----------cEEEEeccCceEeecc-cccccccceeeEEEecCCeEEEEEecC-----------CcEEEEEecC
Q 019482 267 ----------DICVVDVKKMEINHWS-KRLHLGTSIALVEFCPTQRVVLTASKE-----------WGAMITKLTV 319 (340)
Q Consensus 267 ----------~i~i~d~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d-----------g~i~iw~~~~ 319 (340)
.|.+||..+..-.... ........-.++...|++++++.|+.+ ..+.+||...
T Consensus 423 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t 497 (656)
T 1k3i_A 423 QDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ 497 (656)
T ss_dssp SSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred CCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC
Confidence 6788888776544322 111212223455677899999999865 4578888754
No 270
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.87 E-value=2.1e-05 Score=65.30 Aligned_cols=206 Identities=3% Similarity=-0.073 Sum_probs=125.4
Q ss_pred CCCeeEEEEcCCCCeEEEEe-cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeE-EEccCCCcEEEEe
Q 019482 63 EGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRIMH 140 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d 140 (340)
...+..++|++.+..|+.+. ..+.|+.++++.......... .......+++.+.+..| ++-...+.|.+.+
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~-------~~~~p~glavd~~~g~ly~~d~~~~~I~~~~ 144 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST-------GLESPGGLAVDWVHDKLYWTDSGTSRIEVAN 144 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-------SCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC-------CCCCccEEEEecCCCeEEEEcCCCCeEEEEc
Confidence 34588999998666665544 557788888876543222111 12345788998755444 5545567899999
Q ss_pred CCCCceeeccccCccceeEEEecCCCCeEEEee-CC-CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEE
Q 019482 141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TD-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218 (340)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 218 (340)
+..................++++|.+..|..+. .. +.|...++... ....+....-.....++++|++..+| .
T Consensus 145 ~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGla~d~~~~~lY----~ 219 (349)
T 3v64_C 145 LDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMY----W 219 (349)
T ss_dssp TTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSSCSCEEEEEEETTTTEEE----E
T ss_pred CCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCcceEEEeCCCCEEE----E
Confidence 875433322222334678999999655554443 44 77888887643 33333222234578999999877643 4
Q ss_pred ecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeec
Q 019482 219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW 281 (340)
Q Consensus 219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 281 (340)
+....+.|..+|+..................+++ ..+..+++-...+.|..++..+++....
T Consensus 220 aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~ 281 (349)
T 3v64_C 220 VDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEI 281 (349)
T ss_dssp EETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred EECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEE
Confidence 4556788999998754432223222345567777 3444555555677888888656554433
No 271
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.86 E-value=5.8e-07 Score=82.71 Aligned_cols=195 Identities=11% Similarity=0.019 Sum_probs=112.2
Q ss_pred CeeEEEEc-CCCCeEEEEec-CC----CEEEEEecCc-eeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC----
Q 019482 65 DPMTIAVN-PSGDDFVCSTT-NG----GCKLFEVYGG-ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---- 133 (340)
Q Consensus 65 ~v~~~~~~-~~~~~l~~~~~-d~----~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---- 133 (340)
.+...+|| |||++||.+.. +| .|+++|+.++ +...... ......++|+||++.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~---------~~~~~~~~WspDg~~l~y~~~d~~~~ 245 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV---------SGTNGEIVWGPDHTSLFYVTKDETLR 245 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE---------EEECSCCEECSSTTEEEEEEECTTCC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc---------cCceeeEEEecCCCEEEEEEECCCCC
Confidence 57789999 99998886543 23 4999999887 5221110 0113467899999988777654
Q ss_pred -CcEEEEeCCCCcee--eccc-cCccceeEEEecCCCCeEEEeeC---CCeEEEEEccCCe-eE--EEeecCCCCceeeE
Q 019482 134 -GHLRIMHWPSLRII--LDEP-KAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGV-AW--TFLTRNSDEKIELC 203 (340)
Q Consensus 134 -g~i~~~d~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~l~~~~~---d~~v~iwd~~~~~-~~--~~~~~~~~~~v~~~ 203 (340)
..|+.+++.+++.. ..+. ........+.|+|||++|+..+. ...|+++|+.++. .. ..+.........++
T Consensus 246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~ 325 (751)
T 2xe4_A 246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDV 325 (751)
T ss_dssp EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEE
T ss_pred CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEE
Confidence 35888888775421 2221 12234567899999998876652 3468888987752 22 33433333444555
Q ss_pred EEccCCCcceEEEEEecC---CcceEEEEECCCCcEEee-eeccCC--CeeEEEECCCCCEEEEeeCCCc--EEEEec
Q 019482 204 RFSKDGTKPFLFCTVQRG---DKALLAVYDISTWNKIGH-KRLLRK--PASVLSISLDGKYLAMGSKDGD--ICVVDV 273 (340)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~-~~~~~~--~i~~~~~s~~~~~l~~~~~dg~--i~i~d~ 273 (340)
.|+. +..++ +.+.. ....|..+|+.++..... +..+.. .+..+.+. .+.++++...++. |.++|+
T Consensus 326 ~~~~-g~~l~---~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 326 QMHG-TSHLV---ILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEET-TTEEE---EEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred eeee-CCEEE---EEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 5443 55422 22221 345788888875322122 222332 34445554 2344555666775 555564
No 272
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.85 E-value=2.2e-06 Score=69.95 Aligned_cols=193 Identities=13% Similarity=0.017 Sum_probs=118.2
Q ss_pred CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCC--CeEEEEEccCCeeEE
Q 019482 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD--GSARIWKTEDGVAWT 190 (340)
Q Consensus 113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--~~v~iwd~~~~~~~~ 190 (340)
.....++|+++++++++-..++.|..||.... ..... ........+++.++++++++.... ..|..+|..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE-eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 45678999999987777667889999997653 22222 223468899999999866655332 247777777776543
Q ss_pred EeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE-Eeeee---------ccCCCeeEEEECCCCCEEE
Q 019482 191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK-IGHKR---------LLRKPASVLSISLDGKYLA 260 (340)
Q Consensus 191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-~~~~~---------~~~~~i~~~~~s~~~~~l~ 260 (340)
............++..+++.. +++...++.|..+|..+++. +.... ..-...+.+ +|++++|+
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~-----~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ly 182 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQY-----LTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLY 182 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEE-----EEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEE
T ss_pred EEeCCCccccCcccccCCCcE-----EEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEE
Confidence 332212222344555554432 34445678899999876531 11100 001123445 78887776
Q ss_pred Eee-CCCcEEEEeccC-ceEe--ecccccccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482 261 MGS-KDGDICVVDVKK-MEIN--HWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL 317 (340)
Q Consensus 261 ~~~-~dg~i~i~d~~~-~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~ 317 (340)
++. ..+.|..|++.. ++.. ..+. . ......++++++|+++++....+.|.+++.
T Consensus 183 v~d~~~~~I~~~~~~~~g~~~~~~~~~--~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~ 240 (306)
T 2p4o_A 183 VSNTEKMLLLRIPVDSTDKPGEPEIFV--E-QTNIDDFAFDVEGNLYGATHIYNSVVRIAP 240 (306)
T ss_dssp EEETTTTEEEEEEBCTTSCBCCCEEEE--E-SCCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred EEeCCCCEEEEEEeCCCCCCCccEEEe--c-cCCCCCeEECCCCCEEEEeCCCCeEEEECC
Confidence 654 567899999875 3221 1111 1 135678999999988777777788888764
No 273
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.82 E-value=1.1e-05 Score=68.13 Aligned_cols=207 Identities=3% Similarity=-0.093 Sum_probs=127.0
Q ss_pred CCCeeEEEEcCCCCeEEEE-ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeE-EEccCCCcEEEEe
Q 019482 63 EGDPMTIAVNPSGDDFVCS-TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRIMH 140 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d 140 (340)
...+..++|++.+..|+.+ ...+.|+.++++.......... .......+++.+.+..| ++-...+.|.+.+
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~-------~~~~p~glavd~~~g~lY~~d~~~~~I~~~~ 187 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST-------GLESPGGLAVDWVHDKLYWTDSGTSRIEVAN 187 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS-------SCSCCCCEEEETTTTEEEEEETTTTEEEECB
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC-------CCCCccEEEEEeCCCeEEEEcCCCCeEEEEe
Confidence 3458899999866655544 4557788888876543222211 11344678888755444 4545567899888
Q ss_pred CCCCceeeccccCccceeEEEecCCCCeEEEee-CC-CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEE
Q 019482 141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TD-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218 (340)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 218 (340)
+..................++++|.+..|+.+. .. +.|..+++.... ...+....-.....++++|++..+ .+
T Consensus 188 ~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGlavd~~~~~l----Y~ 262 (386)
T 3v65_B 188 LDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRM----YW 262 (386)
T ss_dssp TTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEEGGGTEE----EE
T ss_pred CCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCeeeEEEeCCCCEE----EE
Confidence 765443322323334678999999666555544 33 678888876433 333322223457899999887764 34
Q ss_pred ecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecc
Q 019482 219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS 282 (340)
Q Consensus 219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 282 (340)
+....+.|..+|+..................+++ ..+..+++-...+.|..+|..+++....+
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 263 VDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp EETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 4566788999998754433223323345567777 34455555556788998886666555444
No 274
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.79 E-value=3.1e-05 Score=65.56 Aligned_cols=226 Identities=9% Similarity=-0.057 Sum_probs=134.0
Q ss_pred eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEc-cCCCcEEEEeCCCC----ceeeccc
Q 019482 77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSL----RIILDEP 151 (340)
Q Consensus 77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~----~~~~~~~ 151 (340)
+|+.+.. ..|+..++......... .....+..++|++....|+.+ ...+.|+.+++... .......
T Consensus 85 ~ll~~~~-~~I~~i~l~~~~~~~~~--------~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~ 155 (400)
T 3p5b_L 85 YLFFTNR-HEVRKMTLDRSEYTSLI--------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 155 (400)
T ss_dssp EEEEEET-TEEEEECTTSCSCEEEE--------CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC
T ss_pred eeEEecc-ceeEEEccCCcceeEec--------cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe
Confidence 4555444 45888888765432221 133577899999866655554 45678888888652 1222222
Q ss_pred cCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEE
Q 019482 152 KAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD 230 (340)
Q Consensus 152 ~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d 230 (340)
........+++.+ .+++.++-...+.|.+.+++.......+. ........+++.|.+..+|. .-.+..+.|...+
T Consensus 156 ~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~-~~~~~P~~iavdp~~g~ly~---td~~~~~~I~~~~ 231 (400)
T 3p5b_L 156 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYW---TDWGTPAKIKKGG 231 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE-CSSCCEEEEEEETTTTEEEE---EECSSSCCEEEEE
T ss_pred CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe-CCCCCcceEEEecccCeEEE---EeCCCCCEEEEEe
Confidence 2334677899988 45555555567899999987554433333 23345789999997765331 2223347888888
Q ss_pred CCCCcEEeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC
Q 019482 231 ISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE 309 (340)
Q Consensus 231 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 309 (340)
+............-.....++++|++..|+.+. ..+.|..+|+..............-....++++. .+.++.+-...
T Consensus 232 ~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~ 310 (400)
T 3p5b_L 232 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIIN 310 (400)
T ss_dssp TTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSS
T ss_pred CCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCC
Confidence 875443322233335678899999877777764 4678999998764433222111111234567763 34555566556
Q ss_pred CcEEEEE
Q 019482 310 WGAMITK 316 (340)
Q Consensus 310 g~i~iw~ 316 (340)
+.|..++
T Consensus 311 ~~V~~~~ 317 (400)
T 3p5b_L 311 EAIFSAN 317 (400)
T ss_dssp CSEEEEE
T ss_pred CeEEEEE
Confidence 6666665
No 275
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.79 E-value=1.1e-05 Score=63.24 Aligned_cols=198 Identities=9% Similarity=0.048 Sum_probs=122.3
Q ss_pred CCeEEEEEecCCCeE-EEccCCCcEEEEeCCCCceeeccc-cCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee--
Q 019482 113 GPQKCLSFSVDGSRF-AAGGVDGHLRIMHWPSLRIILDEP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-- 188 (340)
Q Consensus 113 ~~v~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-- 188 (340)
..+..++|+|+++.| ++...++.|...|.. ++....+. ........+++.+++.++++.-.++.+.++++.....
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~ 105 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVK 105 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeee
Confidence 468999999976655 456678889999987 77665553 2234677889999888777766778999998865442
Q ss_pred -EEEee-----cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC-CCcEEeeee-------ccCCCeeEEEECC
Q 019482 189 -WTFLT-----RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKR-------LLRKPASVLSISL 254 (340)
Q Consensus 189 -~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~-------~~~~~i~~~~~s~ 254 (340)
+.... ...+.....++|+|.+..+++ +....-..|..|+-. ....+.... ..-..+..++++|
T Consensus 106 ~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v---a~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp 182 (255)
T 3qqz_A 106 ILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF---FKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQ 182 (255)
T ss_dssp EEEEEECCCSSCCCSSCCEEEEEETTTTEEEE---EEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEET
T ss_pred eeeeeccccccccccCCcceEEEeCCCCEEEE---EECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcC
Confidence 22221 122334689999999876432 222222355556511 111111111 1223578999999
Q ss_pred C-CCEEEEeeCCCcEEEEeccCceEeeccccc--cc-----ccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 255 D-GKYLAMGSKDGDICVVDVKKMEINHWSKRL--HL-----GTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 255 ~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
. +++++....+..|..+|.+.. ++..+... .. -.....|+|.++|++.++ ++-+ .+|.+.
T Consensus 183 ~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n--~~y~f~ 250 (255)
T 3qqz_A 183 QKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPN--RFYRFT 250 (255)
T ss_dssp TTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTT--EEEEEE
T ss_pred CCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCc--eEEEEE
Confidence 6 455666666788999997654 43332211 10 125689999999986666 5554 455553
No 276
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.79 E-value=8.6e-06 Score=72.44 Aligned_cols=221 Identities=11% Similarity=0.038 Sum_probs=134.5
Q ss_pred CCCEEEEEecCceeeeeeccccCCC-----------------------------CC-CCCCe-EEEEEecCCCeEEEccC
Q 019482 84 NGGCKLFEVYGGATDINLLAKKMPP-----------------------------LQ-DAGPQ-KCLSFSVDGSRFAAGGV 132 (340)
Q Consensus 84 d~~i~iw~~~~~~~~~~~~~~~~~~-----------------------------~~-~~~~v-~~~~~~~~~~~l~~~~~ 132 (340)
++.|+.+|..+++...+........ .. ....+ ..+++.++..+++.+..
T Consensus 181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g 260 (599)
T 1w6s_A 181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG 260 (599)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCC
Confidence 7889999999988776654321100 00 00011 13556677777777665
Q ss_pred C----------------CcEEEEeCCCCceeeccccCcc---------ceeEEEec-CCC---CeEEEeeCCCeEEEEEc
Q 019482 133 D----------------GHLRIMHWPSLRIILDEPKAHK---------SVLDMDFS-LDS---EFLATTSTDGSARIWKT 183 (340)
Q Consensus 133 d----------------g~i~~~d~~~~~~~~~~~~~~~---------~i~~~~~~-~~~---~~l~~~~~d~~v~iwd~ 183 (340)
+ +.|..+|.++++....+...+. ...-+... .+| ..++.++.+|.++++|.
T Consensus 261 ~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~ 340 (599)
T 1w6s_A 261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDR 340 (599)
T ss_dssp CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEET
T ss_pred CCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEEC
Confidence 4 3799999999998776654321 11112222 467 46777889999999999
Q ss_pred cCCeeEEEeecCC------------CCce--------------------------eeEEEccCCCcceEEE---------
Q 019482 184 EDGVAWTFLTRNS------------DEKI--------------------------ELCRFSKDGTKPFLFC--------- 216 (340)
Q Consensus 184 ~~~~~~~~~~~~~------------~~~v--------------------------~~~~~~~~~~~~~~~~--------- 216 (340)
++++.+....... ..++ ..++++|+...++...
T Consensus 341 ~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~ 420 (599)
T 1w6s_A 341 TDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEP 420 (599)
T ss_dssp TTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEE
T ss_pred CCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeec
Confidence 9999887654221 0011 2456777766433211
Q ss_pred -----------------EEe--cC------CcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEE
Q 019482 217 -----------------TVQ--RG------DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVV 271 (340)
Q Consensus 217 -----------------~~~--~~------~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 271 (340)
+.. .+ ..+.|..||+.+++.+-...... +...-.+...+.+++.++.|+.++.|
T Consensus 421 ~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagg~vf~gt~dg~l~A~ 499 (599)
T 1w6s_A 421 FMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF-AVWGGTMATAGDLVFYGTLDGYLKAR 499 (599)
T ss_dssp CCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEE
T ss_pred ccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC-CccCcceEecCCEEEEECCCCeEEEE
Confidence 011 12 45889999999999876554321 22211122356788889999999999
Q ss_pred eccCceEeecccccccccceeeEEEecCCe-EEEEE
Q 019482 272 DVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTA 306 (340)
Q Consensus 272 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~ 306 (340)
|.++++.+-...... .....-+.+..+|+ ++++.
T Consensus 500 D~~tG~~lW~~~l~~-g~~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 500 DSDTGDLLWKFKIPS-GAIGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp ETTTCCEEEEEECSS-CCCSCCEEEEETTEEEEEEE
T ss_pred ECCCCCEEEEeeCCC-CcEeccEEEEeCCEEEEEEE
Confidence 999999887664332 22233456667886 44443
No 277
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.78 E-value=1.9e-06 Score=76.62 Aligned_cols=172 Identities=10% Similarity=0.013 Sum_probs=106.8
Q ss_pred CcEEEEeCCCCceeeccccC-cc--------ceeEEEec-CCCC---eEEEeeCCCeEEEEEccCCeeEEEeecCCC---
Q 019482 134 GHLRIMHWPSLRIILDEPKA-HK--------SVLDMDFS-LDSE---FLATTSTDGSARIWKTEDGVAWTFLTRNSD--- 197 (340)
Q Consensus 134 g~i~~~d~~~~~~~~~~~~~-~~--------~i~~~~~~-~~~~---~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~--- 197 (340)
+.|..+|..+++.+..+... +. ...-+... .+|+ .++.++.+|.++++|.++++.+........
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 370 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW 370 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence 57999999999988776432 11 11112222 4664 688899999999999999998766543210
Q ss_pred ---------Cc--------------------------------eeeEEEccCCCcceEEEEE------------------
Q 019482 198 ---------EK--------------------------------IELCRFSKDGTKPFLFCTV------------------ 218 (340)
Q Consensus 198 ---------~~--------------------------------v~~~~~~~~~~~~~~~~~~------------------ 218 (340)
.+ -..++++|+...++....-
T Consensus 371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 450 (582)
T 1flg_A 371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY 450 (582)
T ss_dssp EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence 00 0134566665543321100
Q ss_pred ----------ecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccc
Q 019482 219 ----------QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLG 288 (340)
Q Consensus 219 ----------~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 288 (340)
....++.|..||+.+++.+-...... +...-.....+.+++.++.|+.++.||.++++.+..+.... .
T Consensus 451 ~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~-g 528 (582)
T 1flg_A 451 LGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS-G 528 (582)
T ss_dssp CCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS-C
T ss_pred eccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCC-C
Confidence 01236889999999999875554432 22221222246788889999999999999999987665432 2
Q ss_pred cceeeEEEecCCe-EEEEEe
Q 019482 289 TSIALVEFCPTQR-VVLTAS 307 (340)
Q Consensus 289 ~~i~~~~~~~~~~-~l~~~~ 307 (340)
....-+.+..+|+ ++++.+
T Consensus 529 ~~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 529 IVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp CCSCCEEEEETTEEEEEEEE
T ss_pred cccCceEEEECCEEEEEEEc
Confidence 2223367778886 444433
No 278
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.75 E-value=1.2e-05 Score=71.51 Aligned_cols=240 Identities=14% Similarity=0.078 Sum_probs=143.1
Q ss_pred CCeEEEEecCCCEEEEEecCceeeeeeccccCC-CCC-CCCCeEEEEEe-cCCC-eEEEcc------CCCcEEEEeCCCC
Q 019482 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMP-PLQ-DAGPQKCLSFS-VDGS-RFAAGG------VDGHLRIMHWPSL 144 (340)
Q Consensus 75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~~-~~~~v~~~~~~-~~~~-~l~~~~------~dg~i~~~d~~~~ 144 (340)
+..++.++.++.|..+|..+++...+....... ... ...++ +.=. .+++ .++++. .++.|..+|.+++
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG 194 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTG 194 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEECCCC
Confidence 557888888999999999999877665332100 000 11121 1100 1233 555654 3789999999999
Q ss_pred ceeeccccCcc-----------------------------------------ceeEEEecCCCCeEEEeeC---------
Q 019482 145 RIILDEPKAHK-----------------------------------------SVLDMDFSLDSEFLATTST--------- 174 (340)
Q Consensus 145 ~~~~~~~~~~~-----------------------------------------~i~~~~~~~~~~~l~~~~~--------- 174 (340)
+.+........ .-..++++|+..+++.+..
T Consensus 195 ~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~ 274 (582)
T 1flg_A 195 EEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWA 274 (582)
T ss_dssp CEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGG
T ss_pred CEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcc
Confidence 87764432100 0013456676666665552
Q ss_pred -----------C----CeEEEEEccCCeeEEEeecCC-CC----ceee-EEEc---cCCCcceEEEEEecCCcceEEEEE
Q 019482 175 -----------D----GSARIWKTEDGVAWTFLTRNS-DE----KIEL-CRFS---KDGTKPFLFCTVQRGDKALLAVYD 230 (340)
Q Consensus 175 -----------d----~~v~iwd~~~~~~~~~~~~~~-~~----~v~~-~~~~---~~~~~~~~~~~~~~~~d~~i~i~d 230 (340)
| +.|..+|.++++.+-.++..+ +. .+.. +.+. .+|+..- .++.++.++.++++|
T Consensus 275 r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~--~v~~~~~~G~l~~lD 352 (582)
T 1flg_A 275 RTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVK--ATAHADRNGFFYVVD 352 (582)
T ss_dssp GSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEE--EEEEECTTSEEEEEE
T ss_pred cccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEE--EEEEECCCceEEEEE
Confidence 2 689999999999987775322 11 0111 1122 3564211 156788999999999
Q ss_pred CCCCcEEeeeeccC-------------CC--------------------------------eeEEEECCCCCEEEEee--
Q 019482 231 ISTWNKIGHKRLLR-------------KP--------------------------------ASVLSISLDGKYLAMGS-- 263 (340)
Q Consensus 231 ~~~~~~~~~~~~~~-------------~~--------------------------------i~~~~~s~~~~~l~~~~-- 263 (340)
.++++.+....... .+ -..++++|+...+++..
T Consensus 353 ~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~ 432 (582)
T 1flg_A 353 RSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANH 432 (582)
T ss_dssp TTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEEC
T ss_pred CCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechh
Confidence 99998875544321 00 01346677655555432
Q ss_pred -------------------------------CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcE
Q 019482 264 -------------------------------KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGA 312 (340)
Q Consensus 264 -------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 312 (340)
.+|.|..||+.+++.+-..... .++..-.....+.+++.++.||.+
T Consensus 433 ~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagglvf~g~~dg~l 509 (582)
T 1flg_A 433 WKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYF 509 (582)
T ss_dssp EEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEE
T ss_pred cceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC---CCCcccceEeCCCEEEEECCCCcE
Confidence 2578999999999877554321 233332233345677778899999
Q ss_pred EEEEecCCC
Q 019482 313 MITKLTVPA 321 (340)
Q Consensus 313 ~iw~~~~~~ 321 (340)
+.+|.+..+
T Consensus 510 ~A~D~~tG~ 518 (582)
T 1flg_A 510 KAFDAKSGK 518 (582)
T ss_dssp EEEETTTCC
T ss_pred EEEECCCCC
Confidence 888876544
No 279
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=4.6e-05 Score=65.57 Aligned_cols=245 Identities=7% Similarity=-0.059 Sum_probs=143.3
Q ss_pred eeEEEEcC-CCCeEEEEec-CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEE-------ecCCCeEEEccCCC--
Q 019482 66 PMTIAVNP-SGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF-------SVDGSRFAAGGVDG-- 134 (340)
Q Consensus 66 v~~~~~~~-~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~l~~~~~dg-- 134 (340)
...|+|+| ++..|+.+.. .+.|++.|+..+.......... ........++| +++++.|+++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~----~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~ 216 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINT----IPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK 216 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTT----SSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCc----cccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence 56899998 3555555444 4568888887766543322110 12345899999 99999666665443
Q ss_pred -----cEEEEeCCC-Ccee-----eccccCccceeEEEecCC-CCeEEEeeCCCeEEEEEcc-------CCee-------
Q 019482 135 -----HLRIMHWPS-LRII-----LDEPKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTE-------DGVA------- 188 (340)
Q Consensus 135 -----~i~~~d~~~-~~~~-----~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~-------~~~~------- 188 (340)
.|.+++... +... ..+. .-.....++++|+ +.++++-..++.|..+|+. ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~ 295 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN 295 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred cccCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence 266665333 2221 1111 1124567889995 4445555577889999997 5543
Q ss_pred ----EEE-eecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC--CCcE--Eeeeecc---C------------
Q 019482 189 ----WTF-LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TWNK--IGHKRLL---R------------ 244 (340)
Q Consensus 189 ----~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~--~~~~--~~~~~~~---~------------ 244 (340)
... +..........++|+|+++.+ .++-.....|+.+|.. .+.. ...+.+. .
T Consensus 296 ~~g~~~~l~~~~~~~~p~~ia~~p~G~~l----YvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f 371 (496)
T 3kya_A 296 NPNTFKQLFTIADPSWEFQIFIHPTGKYA----YFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM 371 (496)
T ss_dssp CTTTEEEEEECSSSSCCEEEEECTTSSEE----EEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred cccccceeEecCCCCCceEEEEcCCCCEE----EEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence 112 222223456899999999853 3555677888886653 3321 0112111 0
Q ss_pred CCee-EEEEC-------CCCCEEEEeeCCCcEEEEeccCceEeecccc------------ccc---------ccceeeEE
Q 019482 245 KPAS-VLSIS-------LDGKYLAMGSKDGDICVVDVKKMEINHWSKR------------LHL---------GTSIALVE 295 (340)
Q Consensus 245 ~~i~-~~~~s-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------~~~---------~~~i~~~~ 295 (340)
.... .+... ++|.++++=..+..|+.++ .++......-. +.. -.....|+
T Consensus 372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa 450 (496)
T 3kya_A 372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV 450 (496)
T ss_dssp SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence 1123 34454 4566666666778899998 44543322111 000 12467899
Q ss_pred EecC-CeEEEEEecCCcEEEEEecCC
Q 019482 296 FCPT-QRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 296 ~~~~-~~~l~~~~~dg~i~iw~~~~~ 320 (340)
++++ |.++++=.....|+.++++..
T Consensus 451 vd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 451 YDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCC
T ss_pred EECCCCEEEEEeCCCCEEEEEECCCC
Confidence 9997 887777777788888888654
No 280
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.69 E-value=1.6e-05 Score=64.69 Aligned_cols=190 Identities=11% Similarity=0.145 Sum_probs=120.1
Q ss_pred CCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCC----CC---eEEEeeC---CCeEEEEEcc-CCeeEEE
Q 019482 123 DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD----SE---FLATTST---DGSARIWKTE-DGVAWTF 191 (340)
Q Consensus 123 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~----~~---~l~~~~~---d~~v~iwd~~-~~~~~~~ 191 (340)
...+++.....+-+.+||+ +++.+..+.. +.++.+..-|+ |+ ++++... +++|.+|++. ....+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 3445666667788999999 7887777643 45666666552 32 2333333 5799999773 2223444
Q ss_pred eec---C--CC-CceeeEEE--ccCCCcceEEEEEecCCcceEEEEECC---C----CcEEeeeeccCCCeeEEEECCCC
Q 019482 192 LTR---N--SD-EKIELCRF--SKDGTKPFLFCTVQRGDKALLAVYDIS---T----WNKIGHKRLLRKPASVLSISLDG 256 (340)
Q Consensus 192 ~~~---~--~~-~~v~~~~~--~~~~~~~~~~~~~~~~~d~~i~i~d~~---~----~~~~~~~~~~~~~i~~~~~s~~~ 256 (340)
+.. . .. ..+..+++ +|.....+ ++....++.+..|++. . .+.++.+.. ...+..+...+..
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~y---afV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~ 191 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYY---AMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEY 191 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEE---EEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTT
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEE---EEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCC
Confidence 421 0 11 45677777 67544322 4566677999998883 2 344555554 3567888899988
Q ss_pred CEEEEeeCCCcEEEEecc-----CceEeecccccccccceeeEEEe--cCCe-EEEEEe-cCCcEEEEEecC
Q 019482 257 KYLAMGSKDGDICVVDVK-----KMEINHWSKRLHLGTSIALVEFC--PTQR-VVLTAS-KEWGAMITKLTV 319 (340)
Q Consensus 257 ~~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~~~~~~i~~~~~~--~~~~-~l~~~~-~dg~i~iw~~~~ 319 (340)
..|+.+-++..|..|+.+ +++.+......+....+..|++- ++++ +|++++ .+....+|+...
T Consensus 192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG 263 (355)
T ss_dssp TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence 999999998777777754 34455443333434468888884 4554 555555 678999999863
No 281
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.64 E-value=0.00012 Score=60.30 Aligned_cols=233 Identities=11% Similarity=0.045 Sum_probs=122.8
Q ss_pred CCCeeEEEEcCCCCeEEEEecCCCEEEEEecC-ceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC
Q 019482 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~ 141 (340)
...+.++.|++ +..++ ++..+. |+...+ ++.-...... ....+.+..+.+.+++..++.+. +|.|..- .
T Consensus 79 ~~~~~~i~~~~-~~~~~-~g~~g~--i~~S~DgG~tW~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~S-~ 148 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWI-VGEPPI--MLHTTDGGQSWSQIPLD----PKLPGSPRLIKALGNGSAEMITN-VGAIYRT-K 148 (327)
T ss_dssp CCEEEEEEEET-TEEEE-EEETTE--EEEESSTTSSCEECCCC----TTCSSCEEEEEEEETTEEEEEET-TCCEEEE-S
T ss_pred CccEEEEEecC-CeEEE-EECCCe--EEEECCCCCCceECccc----cCCCCCeEEEEEECCCCEEEEeC-CccEEEE-c
Confidence 34588899976 44444 455563 333333 3322221110 01224567888877776666554 5544321 1
Q ss_pred CCCceee-ccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEec
Q 019482 142 PSLRIIL-DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR 220 (340)
Q Consensus 142 ~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 220 (340)
..++.-. ........+..+.+.|++.+++.+. ++.+..-+-..++.-..+.......+..+.+.+++. +...
T Consensus 149 DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~------~~~~ 221 (327)
T 2xbg_A 149 DSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR------LWMI 221 (327)
T ss_dssp STTSSEEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSC------EEEE
T ss_pred CCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECCCCCCCccceeEECCCCC------EEEE
Confidence 2232211 1123344688999999888777665 454443321113332223323345688899999887 3444
Q ss_pred CCcceEEEEECCCCcEEeeeec----cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc-ccccceeeEE
Q 019482 221 GDKALLAVYDISTWNKIGHKRL----LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL-HLGTSIALVE 295 (340)
Q Consensus 221 ~~d~~i~i~d~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~i~~~~ 295 (340)
+.++.+++.+.+.++.-..... ....+..+.+.+++..++++. +|.| ++....++.-..+... .....+.++.
T Consensus 222 ~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~ 299 (327)
T 2xbg_A 222 VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKIL 299 (327)
T ss_dssp ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEE
T ss_pred eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEE
Confidence 5567777764332332222221 123578899998887777664 6666 3344444322222111 0124678899
Q ss_pred EecCCeEEEEEecCCcEEEE
Q 019482 296 FCPTQRVVLTASKEWGAMIT 315 (340)
Q Consensus 296 ~~~~~~~l~~~~~dg~i~iw 315 (340)
|.++++ ++.++.+|.|.-+
T Consensus 300 ~~~~~~-~~~~G~~G~i~~~ 318 (327)
T 2xbg_A 300 FFSPDQ-GFILGQKGILLRY 318 (327)
T ss_dssp EEETTE-EEEECSTTEEEEE
T ss_pred EECCCc-eEEEcCCceEEEE
Confidence 986666 5566678865444
No 282
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.61 E-value=0.00012 Score=60.75 Aligned_cols=233 Identities=13% Similarity=0.086 Sum_probs=122.1
Q ss_pred CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC---CCeEEEccC-C-----
Q 019482 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGV-D----- 133 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~-d----- 133 (340)
-.....++|.|+|+++ ++...+.|++++ +++.. .+.... ...........++|+|+ +..|+++.. .
T Consensus 30 l~~P~~ia~~pdG~l~-V~e~~g~I~~i~--~g~~~-~~~~~~-v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~ 104 (352)
T 2ism_A 30 LEVPWALAFLPDGGML-IAERPGRIRLFR--EGRLS-TYAELS-VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLR 104 (352)
T ss_dssp CSCEEEEEECTTSCEE-EEETTTEEEEEE--TTEEE-EEEECC-CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSE
T ss_pred CCCceEEEEcCCCeEE-EEeCCCeEEEEE--CCCcc-Eeecce-EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCc
Confidence 3467899999999854 456668888888 33321 111111 11123457899999998 555555443 2
Q ss_pred CcEEEEeCCCCc-----eeec-cc---cCccceeEEEecCCCCeEEEeeC-------------CCeEEEEEccCC-----
Q 019482 134 GHLRIMHWPSLR-----IILD-EP---KAHKSVLDMDFSLDSEFLATTST-------------DGSARIWKTEDG----- 186 (340)
Q Consensus 134 g~i~~~d~~~~~-----~~~~-~~---~~~~~i~~~~~~~~~~~l~~~~~-------------d~~v~iwd~~~~----- 186 (340)
+.|..++...+. .+.. +. ........++|.|||.+.++.+. .+.|.-++....
T Consensus 105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n 184 (352)
T 2ism_A 105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN 184 (352)
T ss_dssp EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence 567788876431 1111 22 11113468999999976666432 145555555420
Q ss_pred -------eeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc-------eEEEEECCC--------C--------cE
Q 019482 187 -------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA-------LLAVYDIST--------W--------NK 236 (340)
Q Consensus 187 -------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~-------~i~i~d~~~--------~--------~~ 236 (340)
.....+...+ .....++|+|+...++. .-.+.+. .|.+..... + .+
T Consensus 185 pf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v---~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p 260 (352)
T 2ism_A 185 PFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFS---SEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDP 260 (352)
T ss_dssp TTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEE---EEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCC
T ss_pred cccCCCCCCccEEEEcC-CCcccEEEECCCCCEEE---EEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCC
Confidence 0111122122 23678899994333221 2222222 344332211 0 11
Q ss_pred EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE------eecccccccccceeeEEEecCCeEEEEEec
Q 019482 237 IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI------NHWSKRLHLGTSIALVEFCPTQRVVLTASK 308 (340)
Q Consensus 237 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 308 (340)
+..+ ........++| .+|.++++.-..+.|...++..... ...+. .. ...+..+++.|||.++++...
T Consensus 261 ~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-~~-~~rp~~v~~~pdG~lyv~~~~ 334 (352)
T 2ism_A 261 LYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-SG-FGRLREVQVGPDGALYVTTSN 334 (352)
T ss_dssp SEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-ES-SCCEEEEEECTTSCEEEEECS
T ss_pred eEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec-cc-CCCeeEEEECCCCcEEEEEeC
Confidence 1111 11223456677 4666666665667788887764321 11111 11 247899999999987766543
No 283
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.60 E-value=6.7e-05 Score=61.35 Aligned_cols=205 Identities=7% Similarity=-0.096 Sum_probs=124.5
Q ss_pred CeeEEEEcCCCCeEE-EEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCC-eEEEccCCCcEEEEeCC
Q 019482 65 DPMTIAVNPSGDDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWP 142 (340)
Q Consensus 65 ~v~~~~~~~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~ 142 (340)
.+.+++|++.+..|+ +-...+.|+.+++............ .......+++.+.+. +.++-...+.|.++++.
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~------~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~d 109 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS------GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD 109 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE------CCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC------CCCCccEEEEEcCCCeEEEEECCCCEEEEEECC
Confidence 467899998655555 4445677888888765321111111 113456788987444 44554566789999987
Q ss_pred CCceeeccccCccceeEEEecCCCCeEEEee--CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEec
Q 019482 143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR 220 (340)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 220 (340)
.................+++.|.+..|+.+. ..+.|...++.. .....+....-.....++++|++..+ ..+.
T Consensus 110 G~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~Pnglavd~~~~~l----Y~aD 184 (318)
T 3sov_A 110 GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLTLDYEEQKL----YWAD 184 (318)
T ss_dssp SCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEEEETTTTEE----EEEE
T ss_pred CCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCCCccEEEEeccCCEE----EEEE
Confidence 5433222223334678999999655555554 257888888753 33333322223457899999987764 3455
Q ss_pred CCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeec
Q 019482 221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW 281 (340)
Q Consensus 221 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 281 (340)
...+.|..+|+..................+++.. +..+.+-...+.|..++..+++....
T Consensus 185 ~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~ 244 (318)
T 3sov_A 185 AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLRE 244 (318)
T ss_dssp TTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred CCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEE
Confidence 6778999999875433222222234456677753 34444555678899999877665443
No 284
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.59 E-value=0.00016 Score=59.19 Aligned_cols=208 Identities=8% Similarity=-0.075 Sum_probs=124.4
Q ss_pred CCCeeEEEEcCCCCeEEEE-ecCCCEEEEEecCc---eeeeeeccccCCCCCCCCCeEEEEEecCCCeE-EEccCCCcEE
Q 019482 63 EGDPMTIAVNPSGDDFVCS-TTNGGCKLFEVYGG---ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLR 137 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~-~~d~~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~ 137 (340)
...+.+++|++.+..|+.+ ..++.|..+++.+. .....+... .......+++.+.+..| ++-...+.|.
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~------~~~~p~glavd~~~~~ly~~d~~~~~I~ 102 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR------DIQAPDGLAVDWIHSNIYWTDSVLGTVS 102 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS------SCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC------CCCCcCEEEEeecCCeEEEEECCCCEEE
Confidence 4568899999876656554 44578888888751 111111110 11345788998755444 4445678899
Q ss_pred EEeCCCCceeeccccCccceeEEEecCCCCeEEEeeC-C-CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEE
Q 019482 138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-D-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (340)
Q Consensus 138 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (340)
++++..................++++|.+..|+.+.. . +.|...++. +.....+....-.....+++++++..+
T Consensus 103 ~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~l--- 178 (316)
T 1ijq_A 103 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRL--- 178 (316)
T ss_dssp EEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEE---
T ss_pred EEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEE---
Confidence 9998754332222222346789999996665555443 2 678888875 443333332233467899999987764
Q ss_pred EEEecCCcceEEEEECCCCcEEeeeec--cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecc
Q 019482 216 CTVQRGDKALLAVYDISTWNKIGHKRL--LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS 282 (340)
Q Consensus 216 ~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 282 (340)
..+....+.|..+|+........... .......+++. .+..+++-...+.|..++..+++....+
T Consensus 179 -Y~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 179 -YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp -EEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred -EEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 34556678999999975332222221 12345677774 3455555556788999998766544433
No 285
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.58 E-value=0.00022 Score=60.42 Aligned_cols=209 Identities=6% Similarity=-0.087 Sum_probs=126.6
Q ss_pred CCCCeeEEEEcCCCCeEEEEe-cCCCEEEEEecCce---eeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcE
Q 019482 62 SEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGA---TDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHL 136 (340)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~-~d~~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i 136 (340)
....+..++|++.+..|+.+. ..+.|+.+++.... ....+.. ........+++.+. +++.++-...+.|
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~------~~~~~p~glavD~~~~~lY~~d~~~~~I 183 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS------RDIQAPDGLAVDWIHSNIYWTDSVLGTV 183 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC------SSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe------CCCCCcccEEEEecCCceEEEECCCCeE
Confidence 356788999998766665554 45778888876522 1111111 12246688999884 4444555567889
Q ss_pred EEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeC--CCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE
Q 019482 137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST--DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (340)
Q Consensus 137 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (340)
.+.+++.................++++|.+..|+.+.. .+.|...++..... ..+....-.....+++++++..+|
T Consensus 184 ~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~-~~~~~~~l~~P~glavd~~~~~lY- 261 (400)
T 3p5b_L 184 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLY- 261 (400)
T ss_dssp EEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEE-
T ss_pred EEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc-EEEEECCCCceEEEEEEeCCCEEE-
Confidence 99998765443333333345789999996665555442 36788888864333 333222224688999999887643
Q ss_pred EEEEecCCcceEEEEECCCCcEEeeeec--cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecc
Q 019482 215 FCTVQRGDKALLAVYDISTWNKIGHKRL--LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS 282 (340)
Q Consensus 215 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 282 (340)
.+......|..+|+........... .-.....+++. .+.++++-...+.|..+|..+++....+
T Consensus 262 ---~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 262 ---WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp ---EEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred ---EEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence 4456678899999875443222222 12334566662 3344555556788999997777655444
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.56 E-value=0.00024 Score=65.33 Aligned_cols=226 Identities=9% Similarity=-0.066 Sum_probs=128.8
Q ss_pred eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEE-EccCCCcEEEEeCCCC----ceeeccc
Q 019482 77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRIMHWPSL----RIILDEP 151 (340)
Q Consensus 77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~----~~~~~~~ 151 (340)
+|+.+.. ..|+..++......... .....+..++|.+....|+ +-...+.|+.+++... .....+.
T Consensus 397 ~Ll~an~-~~Ir~i~l~~~~~~~l~--------~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~ 467 (791)
T 3m0c_C 397 YLFFTNR-HEVRKMTLDRSEYTSLI--------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 467 (791)
T ss_dssp EEEEECB-SSEEEECTTSCCCEEEE--------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred ccccccc-cceeEeeccCCcceeee--------cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe
Confidence 4444443 34777777654432211 1235678999998555444 4445678888888652 1122222
Q ss_pred cCccceeEEEecCCCCe-EEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEE
Q 019482 152 KAHKSVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD 230 (340)
Q Consensus 152 ~~~~~i~~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d 230 (340)
........|++.+.++. +++-...+.|.+.++..... ..+..........|++.|.+..+|. .-.+....|...+
T Consensus 468 ~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~-~~l~~~~l~~P~gIaVDp~~g~LYw---tD~g~~~~I~~~~ 543 (791)
T 3m0c_C 468 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYW---TDWGTPAKIKKGG 543 (791)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEE---EECSSSCEEEEEE
T ss_pred cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE-EEEEeCCCCCcceEEEecCCCCEEE---ecCCCCCeEEEEe
Confidence 23345678999886654 44555678999999875443 3343333345889999998765432 2223347899999
Q ss_pred CCCCcEEeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC
Q 019482 231 ISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE 309 (340)
Q Consensus 231 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 309 (340)
+............-.....|++++.+..|+.+. ..+.|..+++........+.....-....+|++.. ++++++-...
T Consensus 544 ~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~ 622 (791)
T 3m0c_C 544 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIIN 622 (791)
T ss_dssp TTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTT
T ss_pred cCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCC
Confidence 875544333333335678999998777777664 45679999986644333322111012344666643 3444444444
Q ss_pred CcEEEEE
Q 019482 310 WGAMITK 316 (340)
Q Consensus 310 g~i~iw~ 316 (340)
+.|...+
T Consensus 623 ~~I~~~d 629 (791)
T 3m0c_C 623 EAIFSAN 629 (791)
T ss_dssp TEEEEEE
T ss_pred CEEEEEe
Confidence 5555444
No 287
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.55 E-value=0.00012 Score=59.94 Aligned_cols=227 Identities=6% Similarity=-0.028 Sum_probs=130.4
Q ss_pred eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeE-EEccCCCcEEEEeCCCCceee-ccccCc
Q 019482 77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRIMHWPSLRIIL-DEPKAH 154 (340)
Q Consensus 77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~-~~~~~~ 154 (340)
+|+.+.. ..|+..+++.......... .....+..+.|.+....| .+-...+.|..+++....... .....-
T Consensus 6 ~ll~~~~-~~I~~i~l~~~~~~~~~~~------~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l 78 (318)
T 3sov_A 6 LLLYANR-RDLRLVDATNGKENATIVV------GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL 78 (318)
T ss_dssp EEEEECE-EEEEEEETTCTTSCCEEEE------EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECC
T ss_pred EEEEEcc-CeEEEEECCCCceEEEEEe------cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCC
Confidence 3444433 4488888876531111111 011346789999855444 444556789999987653211 122222
Q ss_pred cceeEEEecCC-CCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEec-CCcceEEEEECC
Q 019482 155 KSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR-GDKALLAVYDIS 232 (340)
Q Consensus 155 ~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~d~~i~i~d~~ 232 (340)
.....+++.+. ++++++-...+.|.+++++.... ..+..........+++.|.+..+| .+. +..+.|...++.
T Consensus 79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~~~~P~giavdp~~g~ly----~td~~~~~~I~r~~~d 153 (318)
T 3sov_A 79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMY----WTDWGEVPKIERAGMD 153 (318)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEEGGGTEEE----EEECSSSCEEEEEETT
T ss_pred CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE-EEEEeCCCCCccEEEEeCCCCEEE----EEecCCCCEEEEEEcC
Confidence 35677889874 44555555678999999864433 333323334678999999766532 222 346788888887
Q ss_pred CCcEEeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCc
Q 019482 233 TWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWG 311 (340)
Q Consensus 233 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 311 (340)
...........-...+.++++|++..|+.+. ..+.|..+|+......... ... .....++++.. +.++.+-...+.
T Consensus 154 G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~-~~~-~~~P~glav~~-~~lywtd~~~~~ 230 (318)
T 3sov_A 154 GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV-KGS-LPHPFALTLFE-DILYWTDWSTHS 230 (318)
T ss_dssp SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSC-CSCEEEEEEET-TEEEEEETTTTE
T ss_pred CCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe-cCC-CCCceEEEEeC-CEEEEEecCCCe
Confidence 4332222222224568899999777766664 5678999998753322222 112 23456777753 455555555566
Q ss_pred EEEEEec
Q 019482 312 AMITKLT 318 (340)
Q Consensus 312 i~iw~~~ 318 (340)
|..++..
T Consensus 231 V~~~~~~ 237 (318)
T 3sov_A 231 ILACNKY 237 (318)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 6666653
No 288
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.48 E-value=6.6e-06 Score=74.84 Aligned_cols=219 Identities=10% Similarity=-0.080 Sum_probs=122.8
Q ss_pred CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc-CCCcEEEEeCCC----CceeeccccCccceeE
Q 019482 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPS----LRIILDEPKAHKSVLD 159 (340)
Q Consensus 85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~----~~~~~~~~~~~~~i~~ 159 (340)
..|+..++.+....... .....+..++|.+.+..|+.+. ..+.|+.+++.. ......+.........
T Consensus 386 ~~I~~id~~~~~~~~~~--------~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~g 457 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLI--------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 457 (699)
T ss_dssp TC-CEECTTSCCEECCS--------CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCC
T ss_pred cceEEEeCCCCcceeee--------ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcce
Confidence 45777777655432221 1224567889998766666554 457899999875 2222222122234567
Q ss_pred EEecCC-CCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCC-cceEEEEECCCCcEE
Q 019482 160 MDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-KALLAVYDISTWNKI 237 (340)
Q Consensus 160 ~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~ 237 (340)
|++.+. ++++++-...+.|.++++..... ..+..........++++|.+..+| ++... .+.|..+++......
T Consensus 458 lavD~~~g~LY~tD~~~~~I~v~d~dg~~~-~~l~~~~~~~P~giavDp~~g~ly----~td~~~~~~I~~~~~dG~~~~ 532 (699)
T 1n7d_A 458 LAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFREQGSKPRAIVVDPVHGFMY----WTDWGTPAKIKKGGLNGVDIY 532 (699)
T ss_dssp EECCCSSSBCEECCTTTSCEEEEBSSSCCE-EEECCCSSCCCCCEECCSSSSCCE----ECCCSSSCCEEBCCSSSCCCC
T ss_pred EEEEeeCCcEEEEeccCCeEEEEecCCCce-EEEEeCCCCCcceEEEccCCCcEE----EcccCCCCeEEEEeCCCCCee
Confidence 888864 44555545678899999865443 333322224578899999776632 22222 367888777543221
Q ss_pred eeeeccCCCeeEEEECCCCCEEEEe-eCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482 238 GHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK 316 (340)
Q Consensus 238 ~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~ 316 (340)
......-...+.|+|+|++..|+.+ ...+.|..+++........+..........+|++..+ .++++....+.|..++
T Consensus 533 ~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d 611 (699)
T 1n7d_A 533 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSAN 611 (699)
T ss_dssp EESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEE
T ss_pred EEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEE
Confidence 1111222345679999976655555 4567899999875433222211111123456666554 5555665667777776
Q ss_pred e
Q 019482 317 L 317 (340)
Q Consensus 317 ~ 317 (340)
.
T Consensus 612 ~ 612 (699)
T 1n7d_A 612 R 612 (699)
T ss_dssp T
T ss_pred c
Confidence 4
No 289
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.48 E-value=0.00034 Score=57.50 Aligned_cols=243 Identities=12% Similarity=0.075 Sum_probs=129.7
Q ss_pred CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 142 (340)
...+.++.|.+.+..+++ +..+.| +...+.++.-..... .. ......+.++.|.+ +..++ ++..+.|.. ...
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~-~~--~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~D 106 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTL-VL--DHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTD 106 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCC-CC--SCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESS
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCC-CC--CCCCccEEEEEecC-CeEEE-EECCCeEEE-ECC
Confidence 456899999877777774 456643 333333332111111 00 01234688999986 44444 455665443 222
Q ss_pred CCceeeccc---cCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEe
Q 019482 143 SLRIILDEP---KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (340)
Q Consensus 143 ~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 219 (340)
.++.-.... .....+..+.+.+++..++.+. ++.|.. ..+.++.-..........+..+.+.+++.. ++.
T Consensus 107 gG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~-----~~~ 179 (327)
T 2xbg_A 107 GGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEY-----VAV 179 (327)
T ss_dssp TTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCE-----EEE
T ss_pred CCCCceECccccCCCCCeEEEEEECCCCEEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcE-----EEE
Confidence 233211111 1223567788777776666654 554432 223354444444334456889999998874 334
Q ss_pred cCCcceEEEEEC--CCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc--ccccceeeEE
Q 019482 220 RGDKALLAVYDI--STWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL--HLGTSIALVE 295 (340)
Q Consensus 220 ~~~d~~i~i~d~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~i~~~~ 295 (340)
+......+-.|- .+.+.+. ......+..+.+.++++.+++ +.+|.+++.+...++.-..+... .....+..++
T Consensus 180 g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~ 256 (327)
T 2xbg_A 180 SSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLA 256 (327)
T ss_dssp ETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEE
T ss_pred ECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEE
Confidence 443444444443 3444432 233457888999999876654 46787777643334433322211 1123588899
Q ss_pred EecCCeEEEEEecCCcEEEEEecCCCCCCC
Q 019482 296 FCPTQRVVLTASKEWGAMITKLTVPADWKG 325 (340)
Q Consensus 296 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 325 (340)
+.+++..++++. +|.+ .+..+....|..
T Consensus 257 ~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~ 284 (327)
T 2xbg_A 257 YRTPNEVWLAGG-AGAL-LCSQDGGQTWQQ 284 (327)
T ss_dssp ESSSSCEEEEES-TTCE-EEESSTTSSCEE
T ss_pred ecCCCEEEEEeC-CCeE-EEeCCCCcccEE
Confidence 998887766654 5655 344444444443
No 290
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.46 E-value=0.00011 Score=59.44 Aligned_cols=156 Identities=9% Similarity=-0.007 Sum_probs=101.6
Q ss_pred CeEEEEEecCCCeEEEc-cCCCcEEEEeCCCCceee-cccc----Cc--cceeEEEe---cCCCCeEEEee---------
Q 019482 114 PQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIIL-DEPK----AH--KSVLDMDF---SLDSEFLATTS--------- 173 (340)
Q Consensus 114 ~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~-~~~~----~~--~~i~~~~~---~~~~~~l~~~~--------- 173 (340)
...+++|.+....|..+ -..++|..|+...+.... .+.. .. ..+..+.| .|+++++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 34578998855455444 478999999987554322 2222 11 14689999 68877777543
Q ss_pred ----CCCeEEEEEcc---CCeeEEEeecC------------CCCceeeEEEccCCCcceEEEEEecCCc-ceEEEEECCC
Q 019482 174 ----TDGSARIWKTE---DGVAWTFLTRN------------SDEKIELCRFSKDGTKPFLFCTVQRGDK-ALLAVYDIST 233 (340)
Q Consensus 174 ----~d~~v~iwd~~---~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~~~~~~~~~d-~~i~i~d~~~ 233 (340)
.+..|..+|+. +++.+...... .......++..++|+. -++.+.. +.|...+...
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gna-----YVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNS-----YVAFALGMPAIARVSADG 168 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCE-----EEEEEESSCEEEEECTTS
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCE-----EEeCCCCCCeEEEEeCCC
Confidence 25789999998 77776544311 1124789999999985 2334444 6666666654
Q ss_pred CcEEeeeecc------CCCeeEEEECCCCCEEEEeeCCCcEEEEeccC
Q 019482 234 WNKIGHKRLL------RKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (340)
Q Consensus 234 ~~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 275 (340)
... ..+... ....+.++++|+|+.|++....|.|..+|+..
T Consensus 169 ~~~-~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 169 KTV-STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CCE-EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CEE-eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 322 222111 12367899999999888887799999999884
No 291
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.43 E-value=0.00017 Score=58.77 Aligned_cols=191 Identities=14% Similarity=0.176 Sum_probs=118.1
Q ss_pred CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC----CC---eEEEccC---CCcEEEEeCC-
Q 019482 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD----GS---RFAAGGV---DGHLRIMHWP- 142 (340)
Q Consensus 74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~~---dg~i~~~d~~- 142 (340)
....++.....+-+.+||+ .++....+. .+.++.+..-|+ |+ ++++..+ +++|.+|++.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~---------~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp 108 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYN---------TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG 108 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEEC---------CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECT
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEcc---------CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECC
Confidence 3446666666777999999 555544442 145566666553 22 2233333 5789999773
Q ss_pred -CCceeecccc------Cc-cceeEEEe--cCC-CC-eEEEeeCCCeEEEEEcc-------CCeeEEEeecCCCCceeeE
Q 019482 143 -SLRIILDEPK------AH-KSVLDMDF--SLD-SE-FLATTSTDGSARIWKTE-------DGVAWTFLTRNSDEKIELC 203 (340)
Q Consensus 143 -~~~~~~~~~~------~~-~~i~~~~~--~~~-~~-~l~~~~~d~~v~iwd~~-------~~~~~~~~~~~~~~~v~~~ 203 (340)
+++ +..... .. ..+..+++ +|. ++ ++++...+|.+..|++. +.+.+.++... ..+..+
T Consensus 109 ~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg--sq~Egc 185 (355)
T 3amr_A 109 KNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN--SQTEGM 185 (355)
T ss_dssp TTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS--SCEEEE
T ss_pred CCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC--CCcceE
Confidence 333 322311 11 45667777 774 44 57777888999999983 34556666643 468889
Q ss_pred EEccCCCcceEEEEEecCCcceEEEEECC-----CCcEEeeee--ccCCCeeEEEE--CCCCC-EEEEee-CCCcEEEEe
Q 019482 204 RFSKDGTKPFLFCTVQRGDKALLAVYDIS-----TWNKIGHKR--LLRKPASVLSI--SLDGK-YLAMGS-KDGDICVVD 272 (340)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-----~~~~~~~~~--~~~~~i~~~~~--s~~~~-~l~~~~-~dg~i~i~d 272 (340)
...+.... ++.+-.+.-|..||.+ +++.+.... .....+..|++ .++++ +|++.+ .++...+||
T Consensus 186 vvDd~~g~-----Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 186 AADDEYGR-----LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp EEETTTTE-----EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred EEcCCCCe-----EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 99987776 6666777667777755 233443332 12246778887 55666 677666 467899999
Q ss_pred cc-CceEeecc
Q 019482 273 VK-KMEINHWS 282 (340)
Q Consensus 273 ~~-~~~~~~~~ 282 (340)
.. +.+.+..+
T Consensus 261 r~~~~~~vg~f 271 (355)
T 3amr_A 261 RQGKNKYVADF 271 (355)
T ss_dssp SSTTCCEEEEE
T ss_pred CCCCCcEEEEE
Confidence 96 55544443
No 292
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.40 E-value=0.00058 Score=56.73 Aligned_cols=233 Identities=13% Similarity=0.050 Sum_probs=124.8
Q ss_pred CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC---CCeEEEccC----C--
Q 019482 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGV----D-- 133 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~----d-- 133 (340)
-.....++|.|+|+ |+++..++.|++++. +++ ..+.... ...........|+++|+ +..|+++.. +
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~--~~~~~~~-v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~ 102 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLISP-SGK--KLVASFD-VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH 102 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEECS-SCE--EEEEECC-CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCc--eEeeccc-eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence 45688999999997 555566688888873 333 1111110 01113356899999997 445554433 2
Q ss_pred --CcEEEEeCCCC-------ceeec-cccC-ccceeEEEecCCCCeEEEeeC-------------CCeEEEEEccCCee-
Q 019482 134 --GHLRIMHWPSL-------RIILD-EPKA-HKSVLDMDFSLDSEFLATTST-------------DGSARIWKTEDGVA- 188 (340)
Q Consensus 134 --g~i~~~d~~~~-------~~~~~-~~~~-~~~i~~~~~~~~~~~l~~~~~-------------d~~v~iwd~~~~~~- 188 (340)
..|..|+.... +.+.. +... ......++|.|||.++++.+. .+.|.-++.. ++.
T Consensus 103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p 181 (354)
T 3a9g_A 103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPP 181 (354)
T ss_dssp EEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCC
T ss_pred cceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCC
Confidence 56777776543 11111 2111 113467999999987666432 1455555543 220
Q ss_pred -------EEEeecCCCCceeeEEEcc-CCCcceEEEEEecCCc--ceEEEEECCC--------C--------cEEeeeec
Q 019482 189 -------WTFLTRNSDEKIELCRFSK-DGTKPFLFCTVQRGDK--ALLAVYDIST--------W--------NKIGHKRL 242 (340)
Q Consensus 189 -------~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~d--~~i~i~d~~~--------~--------~~~~~~~~ 242 (340)
...+...+. ....++|+| ++.. + +.-.+.+ ..|.+..... + .++..+..
T Consensus 182 ~~npf~~~~i~a~G~r-np~Gla~d~~~g~l-~---v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~ 256 (354)
T 3a9g_A 182 ADNPFPNSPIWSYGHR-NPQGIDWHRASGVM-V---ATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGS 256 (354)
T ss_dssp TTSSSTTCCEEEECCS-CCCEEEECTTTCCE-E---EEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred CCCCCCCCcEEEEccC-CcceEEEeCCCCCE-E---EEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCC
Confidence 112222222 367899999 5552 2 1112222 2343332111 0 11111111
Q ss_pred cCCCeeEEEEC-------CCCCEEEEeeCCCcEEEEeccCc-eEe--ecccccccccceeeEEEecCCeEEEEEe
Q 019482 243 LRKPASVLSIS-------LDGKYLAMGSKDGDICVVDVKKM-EIN--HWSKRLHLGTSIALVEFCPTQRVVLTAS 307 (340)
Q Consensus 243 ~~~~i~~~~~s-------~~~~~l~~~~~dg~i~i~d~~~~-~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 307 (340)
.......++|. .+|+++++.-..+.|...++... +.. ..+.... ...+..+++.|||.++++..
T Consensus 257 ~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 257 ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNV-FGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTT-SCCEEEEEECTTSCEEEEEC
T ss_pred CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCC-CCCeeEEEECCCCcEEEEEe
Confidence 22346777883 46777777666778988888753 221 1221111 34789999999998777664
No 293
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.39 E-value=2.5e-05 Score=66.82 Aligned_cols=155 Identities=8% Similarity=0.039 Sum_probs=97.7
Q ss_pred ceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCC----cceEEEEE
Q 019482 156 SVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD----KALLAVYD 230 (340)
Q Consensus 156 ~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----d~~i~i~d 230 (340)
....++++| ++..|..+...+.|+.+|+..++...... .......++|+++++.++ ++... ...+..++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~--~~~~P~~ia~d~~G~~ly----vad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS--GLSKVRTICWTHEADSMI----ITNDQNNNDRPNNYILT 211 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC--CCSCEEEEEECTTSSEEE----EEECCSCTTSEEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec--CCCCcceEEEeCCCCEEE----EEeCCCCcccceEEEEe
Confidence 457889998 45566666555889999988766543332 334588999999998532 23221 22344444
Q ss_pred CCCCcEE--eeeeccCCCeeEEEECC-CCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeE-EEEE
Q 019482 231 ISTWNKI--GHKRLLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRV-VLTA 306 (340)
Q Consensus 231 ~~~~~~~--~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~ 306 (340)
.. +... ..+.. ......++++| +|.++++-..++.|..++..++.......... ......++|+|+|++ +++-
T Consensus 212 ~~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~-~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 212 RE-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD-SGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp GG-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS-SSCCEEEEECTTSSEEEEEE
T ss_pred CC-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC-CCcceeEEEcCCCCEEEEEE
Confidence 32 2211 12222 23457788999 67666666677899999998766532221111 235678999999984 4555
Q ss_pred ecCCcEEEEEecC
Q 019482 307 SKEWGAMITKLTV 319 (340)
Q Consensus 307 ~~dg~i~iw~~~~ 319 (340)
...+.|..++.+.
T Consensus 289 ~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 289 VNQHYILRSDYDW 301 (430)
T ss_dssp TTTTEEEEEEEET
T ss_pred CCCCEEEEEeCCc
Confidence 5677888887764
No 294
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.39 E-value=0.0012 Score=60.79 Aligned_cols=205 Identities=6% Similarity=-0.102 Sum_probs=121.6
Q ss_pred CCCCeeEEEEcCCCCeEEEE-ecCCCEEEEEecCcee---eeeeccccCCCCCCCCCeEEEEEecCCCeEE-EccCCCcE
Q 019482 62 SEGDPMTIAVNPSGDDFVCS-TTNGGCKLFEVYGGAT---DINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHL 136 (340)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~-~~d~~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i 136 (340)
....+.+++|++.+..|+.+ ...+.|+.+++..... ...+... .......|++.+.+..|+ +-...+.|
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~------~l~~P~GLAvD~~~~~LY~tD~~~~~I 495 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR------DIQAPDGLAVDWIHSNIYWTDSVLGTV 495 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS------SCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec------CCCCcceeeeeecCCcEEEEecCCCeE
Confidence 34568899999865555544 4457788888865321 1111110 224557899988765554 44567889
Q ss_pred EEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeC--CCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE
Q 019482 137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST--DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (340)
Q Consensus 137 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (340)
.+.++........+.........|+++|.+.+|+.+.. .+.|...++... ....+....-.....|++++.+..+|
T Consensus 496 ~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~-~~~~lv~~~l~~P~GLavD~~~~~LY- 573 (791)
T 3m0c_C 496 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLY- 573 (791)
T ss_dssp EEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEE-
T ss_pred EEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC-ceEEEEeCCCCCceEEEEecCCCeEE-
Confidence 99998755433323233346789999997655555542 267888888644 33344333334688999998877643
Q ss_pred EEEEecCCcceEEEEECCCCcEEeeeecc--CCCeeEEEECCCCCEEEEe-eCCCcEEEEeccCceEe
Q 019482 215 FCTVQRGDKALLAVYDISTWNKIGHKRLL--RKPASVLSISLDGKYLAMG-SKDGDICVVDVKKMEIN 279 (340)
Q Consensus 215 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~ 279 (340)
++-.....|..+|+............ -.....|++. +..|+.+ ...+.|...|..+++.+
T Consensus 574 ---waD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 574 ---WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp ---EEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred ---EEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcce
Confidence 34456678999998755443333321 1233455553 3355544 45677888887666443
No 295
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.36 E-value=0.00036 Score=56.39 Aligned_cols=211 Identities=10% Similarity=0.021 Sum_probs=124.5
Q ss_pred EEecCCCCeeEEEEcCCCCeEEEEe-cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEE---ecCCCeEEEcc--
Q 019482 58 VFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF---SVDGSRFAAGG-- 131 (340)
Q Consensus 58 ~~~~h~~~v~~~~~~~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~-- 131 (340)
.++...--..+++|++....|..++ ..+.|..|+...+...................+..+.| .|+++++++..
T Consensus 7 ~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~ 86 (334)
T 2p9w_A 7 DVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA 86 (334)
T ss_dssp EECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred EecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence 3444555577899988666666555 78999999987554322211100000111224589999 68877777533
Q ss_pred -----------CCCcEEEEeCC---CCceeeccc--c-----------CccceeEEEecCCCCeEEEeeCC-CeEEEEEc
Q 019482 132 -----------VDGHLRIMHWP---SLRIILDEP--K-----------AHKSVLDMDFSLDSEFLATTSTD-GSARIWKT 183 (340)
Q Consensus 132 -----------~dg~i~~~d~~---~~~~~~~~~--~-----------~~~~i~~~~~~~~~~~l~~~~~d-~~v~iwd~ 183 (340)
.+..|..||+. +++.+.... . .......++..++|+..++++.. +.|...+.
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence 25779999998 776553322 1 11247899999999999998887 88777776
Q ss_pred cCCeeEEEeecCC-----CCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE--Eeeee-cc---CCCeeEE-E
Q 019482 184 EDGVAWTFLTRNS-----DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK--IGHKR-LL---RKPASVL-S 251 (340)
Q Consensus 184 ~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~-~~---~~~i~~~-~ 251 (340)
... .+..+.... ....+.++++|++.. ++.....+.|..+|+++... +.... +. -.....+ .
T Consensus 167 dG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~-----Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp 240 (334)
T 2p9w_A 167 DGK-TVSTFAWESGNGGQRPGYSGITFDPHSNK-----LIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVT 240 (334)
T ss_dssp TSC-CEEEEEECCCCSSSCCSCSEEEEETTTTE-----EEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEE
T ss_pred CCC-EEeeeeecCCCcccccCcceEEEeCCCCE-----EEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccc
Confidence 533 333322111 123668999999986 34443499999999885432 21110 11 1123333 2
Q ss_pred ECCCCCEEEE-eeCCCcEEEEecc
Q 019482 252 ISLDGKYLAM-GSKDGDICVVDVK 274 (340)
Q Consensus 252 ~s~~~~~l~~-~~~dg~i~i~d~~ 274 (340)
.-.+|+.+++ ....+.+.+.+..
T Consensus 241 ~~~~G~vllV~~~~~~~~~l~S~D 264 (334)
T 2p9w_A 241 VPVGNESVLVGARAPYAISFRSWD 264 (334)
T ss_dssp EEETTEEEEEEEETTEEEEEECSS
T ss_pred cccCCEEEEEEcCCCCEEEEECCC
Confidence 2236777444 4445555555543
No 296
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.32 E-value=2e-05 Score=71.65 Aligned_cols=208 Identities=7% Similarity=-0.083 Sum_probs=121.9
Q ss_pred CCeeEEEEcCCCCeEEEEe-cCCCEEEEEecCc---eeeeeeccccCCCCCCCCCeEEEEEecCC-CeEEEccCCCcEEE
Q 019482 64 GDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGG---ATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRI 138 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~-~d~~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~ 138 (340)
..+..++|++.+..|+.+. ..+.|+.+++.+. .....+.. ........|++.+.+ +++++-...+.|.+
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~------~~~~~P~glavD~~~g~LY~tD~~~~~I~v 479 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSV 479 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC------SCC--CCCEECCCSSSBCEECCTTTSCEEE
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe------CCCCCcceEEEEeeCCcEEEEeccCCeEEE
Confidence 4577899998777666554 4578999888751 11111110 011234568887644 44444455688999
Q ss_pred EeCCCCceeeccccCccceeEEEecCCCCeEEEeeC-C-CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEE
Q 019482 139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-D-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC 216 (340)
Q Consensus 139 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 216 (340)
+++........+.........++++|.+.+|+.+.. . +.|..+++... ....+....-.....++|+|++..+|
T Consensus 480 ~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~PnGlavd~~~~~LY--- 555 (699)
T 1n7d_A 480 ADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLY--- 555 (699)
T ss_dssp EBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSSCCCEEECTTTCCEE---
T ss_pred EecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCCccEEEEeccCCEEE---
Confidence 998755433322222345678899996655555442 2 67888777533 22223212223577899999877643
Q ss_pred EEecCCcceEEEEECCCCcEEeeeec--cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc
Q 019482 217 TVQRGDKALLAVYDISTWNKIGHKRL--LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK 283 (340)
Q Consensus 217 ~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 283 (340)
++....+.|..+|+........... .......+++..+ .++++....+.|..++..+++.+..+.
T Consensus 556 -~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 556 -WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp -EEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred -EEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 4456678899999875433222211 1122345555443 344455567889999988888776653
No 297
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.29 E-value=0.0012 Score=56.83 Aligned_cols=203 Identities=6% Similarity=-0.113 Sum_probs=112.1
Q ss_pred CCeeEEEE-------cCCCCeEEEEecCC-C------EEEEEecC-ceeee----eeccccCCCCCCCCCeEEEEEecC-
Q 019482 64 GDPMTIAV-------NPSGDDFVCSTTNG-G------CKLFEVYG-GATDI----NLLAKKMPPLQDAGPQKCLSFSVD- 123 (340)
Q Consensus 64 ~~v~~~~~-------~~~~~~l~~~~~d~-~------i~iw~~~~-~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~- 123 (340)
..+..++| +++|+.|+++...+ . |.+++... +.... .... .......++++|+
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-------~~~~p~giavdp~~ 258 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-------AYKQCNGATIHPIN 258 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-------EESCCCCEEECTTT
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec-------cCCCceEEEEcCCC
Confidence 35899999 99999777666554 2 55555333 12110 1111 1123457788994
Q ss_pred CCeEEEccCCCcEEEEeCC-------CCce-----------eecc--ccCccceeEEEecCCCCeEEEe-eCCCeEEEEE
Q 019482 124 GSRFAAGGVDGHLRIMHWP-------SLRI-----------ILDE--PKAHKSVLDMDFSLDSEFLATT-STDGSARIWK 182 (340)
Q Consensus 124 ~~~l~~~~~dg~i~~~d~~-------~~~~-----------~~~~--~~~~~~i~~~~~~~~~~~l~~~-~~d~~v~iwd 182 (340)
+.++++-..++.|..+|+. ++.. ...+ .........++|+|++++|..+ +..+.|+.++
T Consensus 259 g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid 338 (496)
T 3kya_A 259 GELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSD 338 (496)
T ss_dssp CCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEe
Confidence 5555566677889999987 4443 0011 1122345789999999964444 4567888866
Q ss_pred ccC--Cee--EEEeecC--CC------------Ccee-eEEEc-------cCCCcceEEEEEecCCcceEEEEECCCCcE
Q 019482 183 TED--GVA--WTFLTRN--SD------------EKIE-LCRFS-------KDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (340)
Q Consensus 183 ~~~--~~~--~~~~~~~--~~------------~~v~-~~~~~-------~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 236 (340)
... +.. ...+.+. .. .... .+... +++.. .++-.....|+.++ .++..
T Consensus 339 ~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~l-----yVaD~~N~rIr~i~-~~G~v 412 (496)
T 3kya_A 339 YDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDF-----YFVDRLNFCVRKVT-PEGIV 412 (496)
T ss_dssp EETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEE-----EEEEGGGTEEEEEC-TTCBE
T ss_pred cCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeE-----EEEECCCCEEEEEe-CCCCE
Confidence 543 221 1222211 00 1233 33343 23332 35556678889888 34533
Q ss_pred Eeeeecc------------------------CCCeeEEEECCC-CCEEEEeeCCCcEEEEeccCceEee
Q 019482 237 IGHKRLL------------------------RKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEINH 280 (340)
Q Consensus 237 ~~~~~~~------------------------~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~ 280 (340)
..+.+. -.....++++++ |.++++=..+..|+.+++.......
T Consensus 413 -~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 413 -STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp -EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred -EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 333221 023467888886 6555555567788888887655443
No 298
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.25 E-value=0.0016 Score=55.65 Aligned_cols=196 Identities=10% Similarity=0.074 Sum_probs=115.2
Q ss_pred CCeEEEEEecC--CCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCC---C-eEEEEEccCC
Q 019482 113 GPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD---G-SARIWKTEDG 186 (340)
Q Consensus 113 ~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~-~v~iwd~~~~ 186 (340)
.....++|+|+ ...|+.+...+.|+.+|..+++... +.........++++++++++++.... . .+...+...+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence 34678999985 3445555444889999987766543 33334468899999999944443311 1 2333333222
Q ss_pred ee-EEEeecCCCCceeeEEEcc-CCCcceEEEEEecCCcceEEEEECCCCcEEeee-ecc-CCCeeEEEECCCCCEEEEe
Q 019482 187 VA-WTFLTRNSDEKIELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK-RLL-RKPASVLSISLDGKYLAMG 262 (340)
Q Consensus 187 ~~-~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-~~~-~~~i~~~~~s~~~~~l~~~ 262 (340)
.. ...+. .......++++| ++.. .++...++.|+.+|..++.....+ ... ...-..++|+|++++|+.+
T Consensus 218 ~~~~~~~~--~~~~P~giavd~~~G~l-----yv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC--NARGAKTCAVHPQNGKI-----YYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE--ECSSBCCCEECTTTCCE-----EECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred eecccccc--ccCCCCEEEEeCCCCeE-----EEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence 11 01121 123467789999 5552 345556789999999877652222 211 1223469999999966555
Q ss_pred -eCCCcEEEEeccC--ceEe--ecccc-----cc--------cccceeeEEE---------ecCCeEEEEEecCCcEEEE
Q 019482 263 -SKDGDICVVDVKK--MEIN--HWSKR-----LH--------LGTSIALVEF---------CPTQRVVLTASKEWGAMIT 315 (340)
Q Consensus 263 -~~dg~i~i~d~~~--~~~~--~~~~~-----~~--------~~~~i~~~~~---------~~~~~~l~~~~~dg~i~iw 315 (340)
...+.|+.+++.. +... ..+.. +. .-.....+++ .++|.++++-...+.|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 4567899988652 2211 00000 00 0123567899 6777777776667777776
Q ss_pred E
Q 019482 316 K 316 (340)
Q Consensus 316 ~ 316 (340)
+
T Consensus 371 ~ 371 (433)
T 4hw6_A 371 T 371 (433)
T ss_dssp C
T ss_pred C
Confidence 5
No 299
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.24 E-value=0.00034 Score=57.67 Aligned_cols=202 Identities=12% Similarity=0.082 Sum_probs=114.0
Q ss_pred CCeeEEEEcCCCCeEEEE------------ecCCCEEEEEecCcee-eeeeccccCCCCCCCCCeEEEEEec--CCC-eE
Q 019482 64 GDPMTIAVNPSGDDFVCS------------TTNGGCKLFEVYGGAT-DINLLAKKMPPLQDAGPQKCLSFSV--DGS-RF 127 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~------------~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~--~~~-~l 127 (340)
...-.+...|+|..++++ ..+|.|.++|+++... ...+.......-...-....+.+.+ ++. +|
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 346677788888655554 2688899999874321 1122111100111224567788766 454 34
Q ss_pred EEc-cC--CCcEEEEeCCCCce----eeccccC-ccceeEEEecCCCCeEEEeeC-----------------CCeEEEEE
Q 019482 128 AAG-GV--DGHLRIMHWPSLRI----ILDEPKA-HKSVLDMDFSLDSEFLATTST-----------------DGSARIWK 182 (340)
Q Consensus 128 ~~~-~~--dg~i~~~d~~~~~~----~~~~~~~-~~~i~~~~~~~~~~~l~~~~~-----------------d~~v~iwd 182 (340)
+++ .. +..|.+|+++.... +..+.+. -...+++.+.++|.+.++... .|.|.-+|
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 443 22 46788887764321 1122211 135789999999987777541 24455555
Q ss_pred ccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC-CcE--EeeeeccCCCeeEEEECC-CCCE
Q 019482 183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNK--IGHKRLLRKPASVLSISL-DGKY 258 (340)
Q Consensus 183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~--~~~~~~~~~~i~~~~~s~-~~~~ 258 (340)
. ++.. .+.... ...+.++|+||++.+ .++.+..+.|..||+.. ++. ...+ ........+++.+ +|++
T Consensus 210 ~--~~~~-~~~~~l-~~pNGia~spDg~~l----Yvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~l 280 (355)
T 3sre_A 210 P--NDVR-VVAEGF-DFANGINISPDGKYV----YIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDL 280 (355)
T ss_dssp T--TCCE-EEEEEE-SSEEEEEECTTSSEE----EEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCE
T ss_pred C--CeEE-EeecCC-cccCcceECCCCCEE----EEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcE
Confidence 4 3322 222222 357899999999874 34555678899999863 322 1223 2245567789999 5988
Q ss_pred EEEeeCC-CcEEEEecc
Q 019482 259 LAMGSKD-GDICVVDVK 274 (340)
Q Consensus 259 l~~~~~d-g~i~i~d~~ 274 (340)
.+++..+ +.|..|+..
T Consensus 281 wva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 281 WVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEEESCHHHHHSCCTT
T ss_pred EEEecCCceEEEEECCC
Confidence 7766533 344444443
No 300
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.19 E-value=0.0011 Score=59.51 Aligned_cols=204 Identities=9% Similarity=-0.064 Sum_probs=119.5
Q ss_pred CCCeeEEEEcCCCCeEEEEec-CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEE-EccCCCcEEEEe
Q 019482 63 EGDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRIMH 140 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~d 140 (340)
-..+.+++|++.+..|+.+.. .+.|+.++++.......+... .......+++.+.+..|+ +-...+.|.+.+
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~------~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~ 112 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS------GLLSPDGLACDWLGEKLYWTDSETNRIEVSN 112 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECS------SCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeC------CCCCcCeEEEEecCCEEEEEeCCCCEEEEEE
Confidence 345789999997776665544 567888887654321122111 224678999999655554 445678899999
Q ss_pred CCCCceeeccccCccceeEEEecCCCCeEEEeeC--CCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEE
Q 019482 141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST--DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218 (340)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 218 (340)
+............-.....+++.|.+..|..+.. .+.|...++. |.....+....-.....+++++++..+| .
T Consensus 113 ~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~Glald~~~~~LY----~ 187 (619)
T 3s94_A 113 LDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLY----W 187 (619)
T ss_dssp TTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSSEEEEEEETTTTEEE----E
T ss_pred CCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEeCCCCCCcEEEEEccCCEEE----E
Confidence 8754332222233345788999997555555543 3567777765 3333333322334678999999877643 4
Q ss_pred ecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE
Q 019482 219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI 278 (340)
Q Consensus 219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 278 (340)
+....+.|..+|+..................+++..+ ...++-...+.|...|..+++.
T Consensus 188 aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 188 ADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp EETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred EeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 4566778999998764432222212223346777655 3444444567899999877654
No 301
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.13 E-value=0.0042 Score=55.67 Aligned_cols=221 Identities=7% Similarity=-0.040 Sum_probs=123.5
Q ss_pred CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc-CCCcEEEEeCCCCce-eeccccCccceeEEEe
Q 019482 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRI-ILDEPKAHKSVLDMDF 162 (340)
Q Consensus 85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~-~~~~~~~~~~i~~~~~ 162 (340)
..|+..++.......... ......+..++|++.+..|+.+. ..+.|..+++..... ...+...-.....+++
T Consensus 18 ~~I~~i~~~~~~~~~~~~------~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 18 RDLRLVDATNGKENATIV------VGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp SBEEEECCC---------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred ccEEEEeCCCCcceEEEE------EcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence 447777776542111111 12335678999999666665544 457788888875432 1222222246789999
Q ss_pred cCCCCe-EEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee
Q 019482 163 SLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (340)
Q Consensus 163 ~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 241 (340)
.+.+.. +++-...+.|.+.++.... ...+....-.....+++.|.+..+|. .--+....|...++..........
T Consensus 92 D~~~~~ly~~d~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~Iavdp~~g~ly~---tD~g~~~~I~r~~~dG~~~~~l~~ 167 (619)
T 3s94_A 92 DWLGEKLYWTDSETNRIEVSNLDGSL-RKVLFWQELDQPRAIALDPSSGFMYW---TDWGEVPKIERAGMDGSSRFIIIN 167 (619)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCCCCEEEETTTTEEEE---EECSSSCEEEEEETTSCSCEEEEC
T ss_pred EecCCEEEEEeCCCCEEEEEECCCCC-EEEEEeCCCCCCceEEEecCCCeEEE---eccCCCCEEEEEECCCCceEEEEe
Confidence 985554 4555567899999987543 33333233345789999998665332 111334677777776443322222
Q ss_pred ccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 242 LLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 242 ~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
..-.....++++++++.|+.+. ..+.|..+|+.......... .. .....++++..+ ..+.+-...+.|...+..
T Consensus 168 ~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~-~~-~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 168 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-GS-LPHPFALTLFED-ILYWTDWSTHSILACNKY 242 (619)
T ss_dssp SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESS
T ss_pred CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe-CC-CCCceEEEEeCC-EEEEecCCCCEEEEEECC
Confidence 2334678899999776666664 46789999987654433322 11 123467777665 444554455666666553
No 302
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=98.13 E-value=0.0025 Score=52.91 Aligned_cols=246 Identities=11% Similarity=0.069 Sum_probs=126.8
Q ss_pred CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC---CCeEEEccC--------
Q 019482 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGV-------- 132 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~-------- 132 (340)
.....++|.|+|+.|+++...|.|++++.. +.....+................++|+|+ +..|+....
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 457899999999845556677888888753 22211111110011123456789999995 445544422
Q ss_pred CCcEEEEeCCCC-------ceee-cccc---CccceeEEEecCCCCeEEEeeC-------------CCeEEEEEccCCe-
Q 019482 133 DGHLRIMHWPSL-------RIIL-DEPK---AHKSVLDMDFSLDSEFLATTST-------------DGSARIWKTEDGV- 187 (340)
Q Consensus 133 dg~i~~~d~~~~-------~~~~-~~~~---~~~~i~~~~~~~~~~~l~~~~~-------------d~~v~iwd~~~~~- 187 (340)
...|..+++... +.+. .+.. .......++|.|||.+.++.+. .+.|.-++....-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 234666666432 1111 1111 1112467999999976665433 2456666654220
Q ss_pred -----------eEEEeecCCCCceeeEEEccCCCcceEEEEEecCCc--ceEEEEECCCCc-------------------
Q 019482 188 -----------AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK--ALLAVYDISTWN------------------- 235 (340)
Q Consensus 188 -----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d--~~i~i~d~~~~~------------------- 235 (340)
....+...+ .....++|+|+...++. .-.+.+ ..|.+ +..+.
T Consensus 177 ~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~---~d~g~~~~dei~~--i~~G~nyGwp~~~~~~~~~~~~~~ 250 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWL---NEHGPRGGDEINI--PQKGKNYGWPLATWGINYSGFKIP 250 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEE---EEECSBSCEEEEC--CCTTCBCCTTTBCSSBCTTSSCCT
T ss_pred CCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEE---EecCCCCCcEEeE--eccCCcCCCCCccCCCCCCCCccC
Confidence 111222222 23778999994333221 111222 12222 11111
Q ss_pred ------------EEeeeeccCCCeeEEEECC-------CCCEEEEeeCCCcEEEEeccCceEeecccc-cccccceeeEE
Q 019482 236 ------------KIGHKRLLRKPASVLSISL-------DGKYLAMGSKDGDICVVDVKKMEINHWSKR-LHLGTSIALVE 295 (340)
Q Consensus 236 ------------~~~~~~~~~~~i~~~~~s~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~i~~~~ 295 (340)
++..+. +......+.|.. +|+++++.-..+.|...++..++....... ......+..++
T Consensus 251 ~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~ 329 (353)
T 2g8s_A 251 EAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVR 329 (353)
T ss_dssp TCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEE
T ss_pred cccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEE
Confidence 001111 112455677753 466777666778888888876543322110 11134789999
Q ss_pred EecCCeEEEEEecCCcEEEEEec
Q 019482 296 FCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 296 ~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
+.|||.++++.. +..=+||.+.
T Consensus 330 ~~pdG~lyv~td-~~~g~I~ri~ 351 (353)
T 2g8s_A 330 TGPDGYLYVLTD-ESSGELLKVS 351 (353)
T ss_dssp ECTTSCEEEEEC-STTEEEEEEE
T ss_pred ECCCCcEEEEEe-CCCCEEEEEe
Confidence 999998666543 2233567664
No 303
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=98.12 E-value=0.0012 Score=54.48 Aligned_cols=185 Identities=12% Similarity=0.098 Sum_probs=106.8
Q ss_pred CeEEEEEecCCCeEEEc------------cCCCcEEEEeCCCC--ce-eeccccC-----ccceeEEEecC--CCC-eEE
Q 019482 114 PQKCLSFSVDGSRFAAG------------GVDGHLRIMHWPSL--RI-ILDEPKA-----HKSVLDMDFSL--DSE-FLA 170 (340)
Q Consensus 114 ~v~~~~~~~~~~~l~~~------------~~dg~i~~~d~~~~--~~-~~~~~~~-----~~~i~~~~~~~--~~~-~l~ 170 (340)
...++...|+|..++++ ..+|.|.++|+.+. +. ...+.+. .-....+.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34556667776444443 26899999998742 21 1122221 12456677655 453 344
Q ss_pred Ee-eC--CCeEEEEEccCCee----EEEeecCCCCceeeEEEccCCCcceEEEEEecC-----------------CcceE
Q 019482 171 TT-ST--DGSARIWKTEDGVA----WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG-----------------DKALL 226 (340)
Q Consensus 171 ~~-~~--d~~v~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----------------~d~~i 226 (340)
.+ .. +.++.+|+++.... +..+....-...+.+.+.++|.. .++.. ..+.+
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~f-----yvt~~~~ftd~~~~~~e~~~~~~~g~v 205 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHF-----YATNDHYFIDPYLKSWEMHLGLAWSFV 205 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEE-----EEEESCSCSSHHHHHHHHHTTCCCEEE
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCE-----EecCCcEeCCcccccchhhccCCccEE
Confidence 44 32 56788888765322 22333333346789999999873 12211 23556
Q ss_pred EEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccC-ceE--eecccccccccceeeEEEec-CCe
Q 019482 227 AVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKK-MEI--NHWSKRLHLGTSIALVEFCP-TQR 301 (340)
Q Consensus 227 ~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~-~~~--~~~~~~~~~~~~i~~~~~~~-~~~ 301 (340)
..+|.. +. ......-...+.++|+||++.|+++. ..+.|..|++.. ++. .+.+ ........+++.+ +|+
T Consensus 206 yr~d~~--~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~---~~~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 206 TYYSPN--DV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL---SFDTLVDNISVDPVTGD 279 (355)
T ss_dssp EEECTT--CC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE---ECSSEEEEEEECTTTCC
T ss_pred EEEECC--eE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE---eCCCCCceEEEeCCCCc
Confidence 666653 22 22222223568899999998887765 467899999863 322 1122 1135678899999 598
Q ss_pred EEEEEecC
Q 019482 302 VVLTASKE 309 (340)
Q Consensus 302 ~l~~~~~d 309 (340)
+.+++..+
T Consensus 280 lwva~~~~ 287 (355)
T 3sre_A 280 LWVGCHPN 287 (355)
T ss_dssp EEEEEESC
T ss_pred EEEEecCC
Confidence 87766544
No 304
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.12 E-value=0.0021 Score=51.67 Aligned_cols=238 Identities=10% Similarity=0.071 Sum_probs=143.2
Q ss_pred EEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc-e
Q 019482 68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-I 146 (340)
Q Consensus 68 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~ 146 (340)
+.-.+|..+.+|.-. ...++++|+++........ ....|.--+|-.+. .|+..+ +..|+-|+++... +
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~--------~~e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P 139 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--------MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQP 139 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE--------CSSCEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCC
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhccee--------cCCccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCC
Confidence 344588888777665 5679999999887665543 22466666675443 454444 4579999997543 3
Q ss_pred eeccccCc----cceeEEEecCCCCeEEEee-------CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEE
Q 019482 147 ILDEPKAH----KSVLDMDFSLDSEFLATTS-------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (340)
Q Consensus 147 ~~~~~~~~----~~i~~~~~~~~~~~l~~~~-------~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (340)
...+..|. ..|.....+++.++++..+ -.|.+.+|..+.+.. +.+. +|.+....+.+.-+.....++
T Consensus 140 ~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ie-Ghaa~F~~~~~~g~~~~~~lf 217 (365)
T 2xzh_A 140 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIE-GHAASFAQFKMEGNAEESTLF 217 (365)
T ss_dssp EEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEEC-CSEEEEEEECCTTCSSCEEEE
T ss_pred ceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc-ceee-eeeeeeEEEecCCCCCCceEE
Confidence 33333332 2678888899999876544 237889999875432 3333 333222222222222222233
Q ss_pred EEEec-CCcceEEEEECCCC---cEE-----ee-eecc---CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecc
Q 019482 216 CTVQR-GDKALLAVYDISTW---NKI-----GH-KRLL---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS 282 (340)
Q Consensus 216 ~~~~~-~~d~~i~i~d~~~~---~~~-----~~-~~~~---~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 282 (340)
+++.- ...+.+++.++... .+. .. +... ..-.-++..|+.-..++..+.-|.|++||++++.++..-
T Consensus 218 ~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~n 297 (365)
T 2xzh_A 218 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 297 (365)
T ss_dssp EEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEe
Confidence 33332 23468999998542 111 11 1111 122456778888888999999999999999999988754
Q ss_pred cccccccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482 283 KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 283 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
.- . ..+|-..+-+.+..=++.....|.|.--.++..
T Consensus 298 rI-S-~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 298 RI-S-GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EC-C-SSCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred cc-C-CCceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 32 2 346655555555445666668887776666543
No 305
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.02 E-value=0.0016 Score=54.11 Aligned_cols=191 Identities=13% Similarity=0.046 Sum_probs=93.7
Q ss_pred CCCeeEEEEcCC---CCeEEEEec-C-----CCEEEEEecCcee--eeeeccccC--CCCCCCCCeEEEEEecCCCeEEE
Q 019482 63 EGDPMTIAVNPS---GDDFVCSTT-N-----GGCKLFEVYGGAT--DINLLAKKM--PPLQDAGPQKCLSFSVDGSRFAA 129 (340)
Q Consensus 63 ~~~v~~~~~~~~---~~~l~~~~~-d-----~~i~iw~~~~~~~--~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~ 129 (340)
......++|+|+ +..|+.+.. . ..|..++...... ...+..... ....| ....++|.|||.+.++
T Consensus 74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h--~~~~l~~~pdG~Lyv~ 151 (352)
T 2ism_A 74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLH--SGGRIAFGPDGMLYVT 151 (352)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCC--CCCCEEECTTSCEEEE
T ss_pred CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCc--CCceEEECCCCCEEEE
Confidence 456899999998 555554433 2 5577787764321 111111000 01112 2368999999976665
Q ss_pred ccC-------------CCcEEEEeCCCC------------ceeeccccCccceeEEEecC-CCCeEEEeeCCCeE-----
Q 019482 130 GGV-------------DGHLRIMHWPSL------------RIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSA----- 178 (340)
Q Consensus 130 ~~~-------------dg~i~~~d~~~~------------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v----- 178 (340)
.+. .|.|.-++.... .....+.........++|+| +++++++-.....+
T Consensus 152 ~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~ 231 (352)
T 2ism_A 152 TGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGH 231 (352)
T ss_dssp CCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CC
T ss_pred ECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCC
Confidence 432 245665664420 00111111223467899999 56654443322221
Q ss_pred -EEEEccCCe------------------eEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE---
Q 019482 179 -RIWKTEDGV------------------AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK--- 236 (340)
Q Consensus 179 -~iwd~~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--- 236 (340)
.+.-+..+. ++..+ ........++| .+|.. ++.....+.|...++.....
T Consensus 232 dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~--~~~~ap~G~~~-~~G~l-----~v~~~~~~~v~~v~~~~~~~~~~ 303 (352)
T 2ism_A 232 DEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW--PQGFPPGNLAF-FRGDL-----YVAGLRGQALLRLVLEGERGRWR 303 (352)
T ss_dssp CEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC--TTCCCEEEEEE-ETTEE-----EEEETTTTEEEEEEEEEETTEEE
T ss_pred eEEEEeccCCcCCCCcccCCCCCCCCcCCeEec--CCCCCCcceEE-ECCEE-----EEEECCCCEEEEEEECCCCccee
Confidence 122222222 11111 11123456666 34442 34444556777776654321
Q ss_pred ---EeeeeccCCCeeEEEECCCCCEEEEee
Q 019482 237 ---IGHKRLLRKPASVLSISLDGKYLAMGS 263 (340)
Q Consensus 237 ---~~~~~~~~~~i~~~~~s~~~~~l~~~~ 263 (340)
...+......+..+++.|||.+.++..
T Consensus 304 ~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 304 VLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp EEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred ecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 112212235678899999997666653
No 306
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.00 E-value=0.0027 Score=51.28 Aligned_cols=188 Identities=12% Similarity=0.016 Sum_probs=93.4
Q ss_pred CCCeEEEEecC-----CCEEEEEecCce---eeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC-----CcEEEEe
Q 019482 74 SGDDFVCSTTN-----GGCKLFEVYGGA---TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRIMH 140 (340)
Q Consensus 74 ~~~~l~~~~~d-----~~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d 140 (340)
++..++.|+.+ ..+.+||+.+.+ .... .. . .....-.++.. .+++.++.|+.+ ..+.+||
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~--~~-~---p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d 134 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSV--AP-M---NVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYD 134 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEE--CC-C---SSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEEC--CC-C---CCCccceeEEE-ECCEEEEEcccCCCcccceEEEEc
Confidence 56677777754 368889887665 2211 11 1 11111112222 266677777644 3588899
Q ss_pred CCCCceee--ccccCccceeEEEecCCCCeEEEeeCC-----CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcce
Q 019482 141 WPSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213 (340)
Q Consensus 141 ~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (340)
+.+.+-.. ...........+. .++++++.|+.+ ..+.+||+.+.+-...-.......-.++.. -+++.
T Consensus 135 ~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i-- 209 (301)
T 2vpj_A 135 PNIDQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHI-- 209 (301)
T ss_dssp TTTTEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEE--
T ss_pred CCCCeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEE--
Confidence 87765322 1211111112222 267777777754 468899987764332211111111112222 23332
Q ss_pred EEEEEecCC-----cceEEEEECCCCcEE--eeeeccCCCeeEEEECCCCCEEEEeeCC-----CcEEEEeccCceE
Q 019482 214 LFCTVQRGD-----KALLAVYDISTWNKI--GHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEI 278 (340)
Q Consensus 214 ~~~~~~~~~-----d~~i~i~d~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~ 278 (340)
.+.++. ...+.+||+.+.+-. ..+.........+. -+++.++.|+.+ ..+.+||+++.+-
T Consensus 210 ---~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 210 ---YVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp ---EEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred ---EEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 334443 356899999876532 21111111122222 266777777765 3577888876553
No 307
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.99 E-value=0.0081 Score=53.94 Aligned_cols=224 Identities=8% Similarity=-0.046 Sum_probs=133.9
Q ss_pred eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEE-ccCCCcEEEEeCCCCceeeccccCcc
Q 019482 77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWPSLRIILDEPKAHK 155 (340)
Q Consensus 77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~~~~~~~ 155 (340)
+|+.+. ...|+..++++......+ ++..-..+..++|++....|+. -..++.|..+++..............
T Consensus 8 ~Ll~s~-~~~I~~i~l~~~~~~~~~------~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~ 80 (628)
T 4a0p_A 8 FLLFSR-RADIRRISLETNNNNVAI------PLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLD 80 (628)
T ss_dssp EEEEEE-TTEEEEEESSCTTCEEEC------CCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred EEEEEe-CCcEEEEECCCCCcceEE------EcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCC
Confidence 444443 455888888765422111 1122346789999996665554 44578899998875433322222223
Q ss_pred ceeEEEecCCCCeE-EEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEec-CCcceEEEEECCC
Q 019482 156 SVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR-GDKALLAVYDIST 233 (340)
Q Consensus 156 ~i~~~~~~~~~~~l-~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~d~~i~i~d~~~ 233 (340)
....+++.+.+..| ++-...+.|.+.++..... ..+....-.....+++.|....+| .+. +....|...++..
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~iavdp~~G~lY----~tD~g~~~~I~r~~~dG 155 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVWKDLDSPRALALDPAEGFMY----WTEWGGKPKIDRAAMDG 155 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEECSSCCCEEEEEEETTTTEEE----EEECSSSCEEEEEETTS
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEEeCCCCCcccEEEccCCCeEE----EeCCCCCCEEEEEeCCC
Confidence 56788898755544 4545567899999865433 333222334578999999766532 222 3367888888875
Q ss_pred CcEEeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcE
Q 019482 234 WNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGA 312 (340)
Q Consensus 234 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 312 (340)
....... ..-.....++++++++.|+.+. ..+.|..+|+..... ..+. .. .....++++.. +.++.+-...+.|
T Consensus 156 ~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~-~~-l~~P~glav~~-~~ly~tD~~~~~I 230 (628)
T 4a0p_A 156 SERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIA-DD-LPHPFGLTQYQ-DYIYWTDWSRRSI 230 (628)
T ss_dssp CSCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE-EC-CSCEEEEEEET-TEEEEEETTTTEE
T ss_pred CceEEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEee-cc-CCCceEEEEEC-CEEEEecCCCCEE
Confidence 5433222 2345678899999877776664 467899999876443 2221 12 23456777765 4555555456666
Q ss_pred EEEEe
Q 019482 313 MITKL 317 (340)
Q Consensus 313 ~iw~~ 317 (340)
...+.
T Consensus 231 ~~~dk 235 (628)
T 4a0p_A 231 ERANK 235 (628)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 65553
No 308
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.97 E-value=0.0044 Score=50.04 Aligned_cols=218 Identities=9% Similarity=-0.016 Sum_probs=106.5
Q ss_pred CCCeEEEEe-cC-----CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC-----CcEEEEeCC
Q 019482 74 SGDDFVCST-TN-----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRIMHWP 142 (340)
Q Consensus 74 ~~~~l~~~~-~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d~~ 142 (340)
++..++.|+ .+ ..+.+||+.+.+..... . . +....-.++. ..+++.++.|+.+ ..+.+||+.
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~-~--~---p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~ 86 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLP-S--I---TRKRRYVASV-SLHDRIYVIGGYDGRSRLSSVECLDYT 86 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECC-C--C---SSCCBSCEEE-EETTEEEEECCBCSSCBCCCEEEEETT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCC-C--C---ChhhccccEE-EECCEEEEEcCCCCCccCceEEEEECC
Confidence 344555565 22 36888888776543211 1 1 1111111222 2356677777754 468999988
Q ss_pred CCc---ee--eccccCccceeEEEecCCCCeEEEeeCC-----CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcc
Q 019482 143 SLR---II--LDEPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP 212 (340)
Q Consensus 143 ~~~---~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (340)
+.+ -. ............+.+ +++.++.|+.+ ..+.+||+.+.+-...-.......-.++.. -+++.
T Consensus 87 ~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i- 162 (301)
T 2vpj_A 87 ADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVI- 162 (301)
T ss_dssp CCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEE-
T ss_pred CCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEE-
Confidence 765 22 222211112222222 57777777644 368899987765322211111111112222 24432
Q ss_pred eEEEEEecCC-----cceEEEEECCCCcEE--eeeeccCCCeeEEEECCCCCEEEEeeCC-----CcEEEEeccCceEee
Q 019482 213 FLFCTVQRGD-----KALLAVYDISTWNKI--GHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEINH 280 (340)
Q Consensus 213 ~~~~~~~~~~-----d~~i~i~d~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~ 280 (340)
.+.++. ...+.+||+.+.+-. ..+.........+. -+++.++.|+.+ ..+.+||+.+.+-..
T Consensus 163 ----yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 236 (301)
T 2vpj_A 163 ----YCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT 236 (301)
T ss_dssp ----EEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred ----EEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence 333433 256889998776422 11111111112222 256777777664 468999998876443
Q ss_pred cccccccccceeeEEEecCCeEEEEEecCC
Q 019482 281 WSKRLHLGTSIALVEFCPTQRVVLTASKEW 310 (340)
Q Consensus 281 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 310 (340)
...... . .....+..-++++++.|+.++
T Consensus 237 ~~~~p~-~-r~~~~~~~~~~~i~v~GG~~~ 264 (301)
T 2vpj_A 237 VTSMTT-P-RCYVGATVLRGRLYAIAGYDG 264 (301)
T ss_dssp ECCCSS-C-CBSCEEEEETTEEEEECCBCS
T ss_pred CCCCCC-c-ccceeEEEECCEEEEEcCcCC
Confidence 221111 1 111122233778888887663
No 309
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.96 E-value=0.0031 Score=50.94 Aligned_cols=178 Identities=8% Similarity=0.003 Sum_probs=103.1
Q ss_pred EEEecCCCeEEEccCC--------------CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEee--CCC--eEE
Q 019482 118 LSFSVDGSRFAAGGVD--------------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS--TDG--SAR 179 (340)
Q Consensus 118 ~~~~~~~~~l~~~~~d--------------g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~--~v~ 179 (340)
--+++++++|+.+... ..|+..++...+... +... ....|+++++.|+-.. .++ .|+
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD----PCIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS----CEEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC----CccEEEEeCCEEEEEeecCCCCceEE
Confidence 4567888888776543 357777776654322 2211 1236788888888765 334 455
Q ss_pred EEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEE
Q 019482 180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYL 259 (340)
Q Consensus 180 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 259 (340)
.-++. +.....+.... + ..++++++.++ .+.....+|...++..+....... +... ..++|++++|
T Consensus 133 ~~~~d-Gs~~~~lt~~~---~--~~~~~~g~~iy----~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~i 198 (302)
T 3s25_A 133 RIRID-GEEKKKIKNHY---L--FTCNTSDRYFY----YNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNV 198 (302)
T ss_dssp EEETT-SCCCEEEESSC---C--CCSEEETTEEE----EECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEE
T ss_pred EEECC-CCCeEEEeCCC---c--eEeeEECCEEE----EEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEE
Confidence 55554 33334444222 2 45688888742 333457789999988765433322 2332 2356999998
Q ss_pred EEeeCC--CcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 260 AMGSKD--GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 260 ~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
+-...+ ..|..-++......... ...+ ..|+|++.+|.-++..+.-.|+.+....
T Consensus 199 y~t~~~~~~~I~~~~ldG~~~~~Lt-----~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 199 YYMDVNRDNAIVHVNINNPNPVVLT-----EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp EEEEGGGTTEEEEECSSSCCCEECS-----CSCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred EEEEcCCCcEEEEEECCCCCeEEEe-----CCCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 876543 35777777665543322 1233 3478888888766443335666666554
No 310
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.86 E-value=0.0089 Score=50.06 Aligned_cols=238 Identities=11% Similarity=0.095 Sum_probs=144.1
Q ss_pred EEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc-e
Q 019482 68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-I 146 (340)
Q Consensus 68 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~ 146 (340)
+.-.+|..+.+|.-. ...++|+|+++........- ...|.--.|-.+. .|+..+ +..|+-|+++... +
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~--------~e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P 138 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM--------TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQP 138 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC--------SSCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec--------CCCceEEEecCCC-eEEEEc-CCeeEEecccCCCCc
Confidence 455788888777655 56799999998876655432 2345555665443 455444 4679999997543 3
Q ss_pred eeccccCc----cceeEEEecCCCCeEEEee-------CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEE
Q 019482 147 ILDEPKAH----KSVLDMDFSLDSEFLATTS-------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (340)
Q Consensus 147 ~~~~~~~~----~~i~~~~~~~~~~~l~~~~-------~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (340)
...+..|. ..|.....+++.++++..+ -.|.+.+|..+.+.. +.+. +|.+....+....+..-..++
T Consensus 139 ~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ie-Ghaa~F~~~~~~g~~~~~~lf 216 (494)
T 1bpo_A 139 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIE-GHAASFAQFKMEGNAEESTLF 216 (494)
T ss_dssp EEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEEC-CSEEEEEEEECTTCSSEEEEE
T ss_pred hhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chhe-eeeeeeEEEecCCCCCCceEE
Confidence 33333332 2688888899999876543 247889999875432 3333 343333333332222222233
Q ss_pred EEEecC-CcceEEEEECCCC---cE-----Eee-eecc---CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecc
Q 019482 216 CTVQRG-DKALLAVYDISTW---NK-----IGH-KRLL---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS 282 (340)
Q Consensus 216 ~~~~~~-~d~~i~i~d~~~~---~~-----~~~-~~~~---~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 282 (340)
|++.-. ..+.+++.++... .+ ... +... ..-..++..++.-..++..+.-|.|++||+.++.++..-
T Consensus 217 ~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~n 296 (494)
T 1bpo_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (494)
T ss_dssp EEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeee
Confidence 333322 3478999998543 11 111 1111 122456788888889999999999999999999988754
Q ss_pred cccccccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482 283 KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 283 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
. .. ..+|-..+-+....-++.....|.|.--.++..
T Consensus 297 r-Is-~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 297 R-IS-GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp E-CC-SSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred c-cc-CCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 3 22 345655555555455666667787766666543
No 311
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.86 E-value=0.013 Score=56.49 Aligned_cols=175 Identities=11% Similarity=0.185 Sum_probs=104.5
Q ss_pred cEEEEeCCCCceeecccc-CccceeEEE---ecCC-CCeEEEee----------CCCeEEEEEccCCeeEEEeecCCCCc
Q 019482 135 HLRIMHWPSLRIILDEPK-AHKSVLDMD---FSLD-SEFLATTS----------TDGSARIWKTEDGVAWTFLTRNSDEK 199 (340)
Q Consensus 135 ~i~~~d~~~~~~~~~~~~-~~~~i~~~~---~~~~-~~~l~~~~----------~d~~v~iwd~~~~~~~~~~~~~~~~~ 199 (340)
.|++.|..+.+.+..+.- ..+.+.+++ |..+ ..+++.|. ..|.|++|++..++.........+++
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 366677666665433322 223444444 4332 46788776 34789999998665544444445677
Q ss_pred eeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEecc--Cce
Q 019482 200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK--KME 277 (340)
Q Consensus 200 v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~--~~~ 277 (340)
+++++-- +|. +++ +....+++|++...+.+......-..+..+.....++++++|..-..+.++..+ ..+
T Consensus 888 v~al~~~-~g~------Lla-~ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~ 959 (1158)
T 3ei3_A 888 VYSMVEF-NGK------LLA-SINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGN 959 (1158)
T ss_dssp EEEEEEE-TTE------EEE-EETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTE
T ss_pred CEEEeee-CCE------EEE-EcCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCe
Confidence 8887644 343 222 235789999998765443111111123333443467899999887778776544 344
Q ss_pred EeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482 278 INHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 278 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
......... ...++++.|-.++ .++.+..+|.+.+...+.
T Consensus 960 L~~~a~D~~-~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 960 FEEIARDFN-PNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEEEECCS-CBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred EEEEEeecc-cccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 433322222 4578888887665 677788999999998865
No 312
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.79 E-value=0.019 Score=51.57 Aligned_cols=199 Identities=8% Similarity=-0.082 Sum_probs=122.1
Q ss_pred CCeeEEEEcCCCCeEEEE-ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeE-EEccCCCcEEEEeC
Q 019482 64 GDPMTIAVNPSGDDFVCS-TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRIMHW 141 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d~ 141 (340)
..+.+++|++.+..|+.+ ..++.|+.++++.......... ....+..+++.+.+..| ++-...+.|.+.++
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~-------g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~ 109 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF-------GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKL 109 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-------SCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC-------CCCCcceEEEEeCCCEEEEEECCCCEEEEEec
Confidence 468899999976666554 4567888888765433222211 11346788888765545 44455678999998
Q ss_pred CCCceeeccccCccceeEEEecCCCCeEEEee--CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEe
Q 019482 142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (340)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 219 (340)
............-.....++++|....|..+. ..+.|...++..... ..+.. .-.....+++++++..+ ..+
T Consensus 110 dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~-~~~~P~GlalD~~~~~L----Y~a 183 (628)
T 4a0p_A 110 DGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVP-NVGRANGLTIDYAKRRL----YWT 183 (628)
T ss_dssp TSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEEC-SCSSEEEEEEETTTTEE----EEE
T ss_pred CCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEEC-CCCCcceEEEccccCEE----EEE
Confidence 65433222223334678999999555555544 246788888764433 33332 23468899999987764 345
Q ss_pred cCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce
Q 019482 220 RGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME 277 (340)
Q Consensus 220 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 277 (340)
....+.|..+|+..... ..+.........+++.. +..+++-...+.|...|..+++
T Consensus 184 D~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 184 DLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp ETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred ECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 56678899999876543 22333333445677754 3344444457788888876554
No 313
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.77 E-value=0.01 Score=47.95 Aligned_cols=189 Identities=15% Similarity=0.126 Sum_probs=93.2
Q ss_pred CCCeEEEEecC-----CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC-----cEEEEeCCC
Q 019482 74 SGDDFVCSTTN-----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-----HLRIMHWPS 143 (340)
Q Consensus 74 ~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~ 143 (340)
++..++.|+.+ ..+.+||..+.+..... . . +....-.+++. .+++.++.|+.++ .+.+||+.+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~--~---p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~ 133 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA-N--M---RDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKS 133 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC-C--C---SSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTT
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCC-C--C---CccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCC
Confidence 56677777754 35888888776543221 1 1 11111112222 2566677776543 578889877
Q ss_pred Cceeec--cccCccceeEEEecCCCCeEEEeeCC-------CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE
Q 019482 144 LRIILD--EPKAHKSVLDMDFSLDSEFLATTSTD-------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (340)
Q Consensus 144 ~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-------~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (340)
.+-... ..........+. -++++++.|+.+ ..+.+||+.+.+-...-.......-.++.. -+++.
T Consensus 134 ~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i--- 207 (302)
T 2xn4_A 134 NEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLL--- 207 (302)
T ss_dssp TEEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEE---
T ss_pred CeEeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEE---
Confidence 653321 111111112222 256777777642 358899987764322211111111112222 23332
Q ss_pred EEEEecCCc-----ceEEEEECCCCcE--EeeeeccCCCeeEEEECCCCCEEEEeeCCC-----cEEEEeccCceEe
Q 019482 215 FCTVQRGDK-----ALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDG-----DICVVDVKKMEIN 279 (340)
Q Consensus 215 ~~~~~~~~d-----~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~ 279 (340)
.+.++.+ ..+.+||+.+.+- +..+.........+. .+++.++.|+.++ .+.+||+.+.+-.
T Consensus 208 --yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 208 --YAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp --EEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred --EEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 3444432 4688999987542 221111111112222 3677777777653 4888998876543
No 314
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.76 E-value=0.011 Score=47.91 Aligned_cols=222 Identities=13% Similarity=0.033 Sum_probs=108.4
Q ss_pred eEEEEec--CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC----CcEEEEeCCCCceee--
Q 019482 77 DFVCSTT--NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----GHLRIMHWPSLRIIL-- 148 (340)
Q Consensus 77 ~l~~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~-- 148 (340)
.++.|+. ...+.+||..+.+..... . .+ .. ......+. .++..++.|+.+ ..+.+||+.+.+-..
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~-~--~p-~~-r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~ 86 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIR-C--PF-EK-RRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKL 86 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECC-C--CS-CC-CBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCC-C--CC-cc-cceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECC
Confidence 4445544 256888998877643221 1 11 01 11112222 366677777754 568899988765322
Q ss_pred ccccCccceeEEEecCCCCeEEEeeCC------CeEEEEEccCCeeEEEeecCCCCce-eeEEEccCCCcceEEEEEecC
Q 019482 149 DEPKAHKSVLDMDFSLDSEFLATTSTD------GSARIWKTEDGVAWTFLTRNSDEKI-ELCRFSKDGTKPFLFCTVQRG 221 (340)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~v~iwd~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~ 221 (340)
...........+.+ ++++++.|+.+ ..+.+||..+.+-.. +........ .++.. -+++ + .+.++
T Consensus 87 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~-~~~~-i----yv~GG 157 (306)
T 3ii7_A 87 GPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT-KPSMLTQRCSHGMVE-ANGL-I----YVCGG 157 (306)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEE-ETTE-E----EEECC
T ss_pred CCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe-CCCCcCCcceeEEEE-ECCE-E----EEECC
Confidence 22211112222222 57777887755 468899988765322 211111111 12222 2443 2 23333
Q ss_pred C---------cceEEEEECCCCcE--EeeeeccCCCeeEEEECCCCCEEEEeeCC-----CcEEEEeccCceEeeccccc
Q 019482 222 D---------KALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEINHWSKRL 285 (340)
Q Consensus 222 ~---------d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~ 285 (340)
. -..+.+||+.+.+- +..+......-..+.+ ++++++.|+.+ ..+.+||+.+.+-.......
T Consensus 158 ~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p 235 (306)
T 3ii7_A 158 SLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMP 235 (306)
T ss_dssp EESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCS
T ss_pred CCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCC
Confidence 2 35588999887642 2211111111122222 66777777653 46889999886544322111
Q ss_pred ccccceeeEEEecCCeEEEEEecC-----CcEEEEEec
Q 019482 286 HLGTSIALVEFCPTQRVVLTASKE-----WGAMITKLT 318 (340)
Q Consensus 286 ~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iw~~~ 318 (340)
. ...-.+++. -++++++.|+.+ ..+.+|+..
T Consensus 236 ~-~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~ 271 (306)
T 3ii7_A 236 W-KGVTVKCAA-VGSIVYVLAGFQGVGRLGHILEYNTE 271 (306)
T ss_dssp C-CBSCCEEEE-ETTEEEEEECBCSSSBCCEEEEEETT
T ss_pred C-CccceeEEE-ECCEEEEEeCcCCCeeeeeEEEEcCC
Confidence 1 111112222 267888888865 335555543
No 315
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.73 E-value=0.028 Score=51.90 Aligned_cols=229 Identities=12% Similarity=0.038 Sum_probs=132.8
Q ss_pred CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~ 142 (340)
...|.++.-..+|. |-.|+.+| +..||-...+ ..... . ......|.++.-..++ .|..|+.+| +..||..
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~---~~~~~--~-~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~ 90 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQ---QHFTY--G-ENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYR 90 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEE---ECSCT--T-STTSSCEEEEEEETTT-EEEEEETTE-EEEEETT
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCceE---EEEcc--C-CCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCC
Confidence 45799999888774 55667788 7777743222 11110 0 1123568888877776 555566555 7899987
Q ss_pred CCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee----cCCCCceeeEEEccCCCcceEEEEE
Q 019482 143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT----RNSDEKIELCRFSKDGTKPFLFCTV 218 (340)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~ 218 (340)
+.+...........|.++.. .++. |..++.+ -+..+|..+++.. .+. ......|.++...+++.. .
T Consensus 91 ~~~f~~~~~~~~~~i~~i~~-~~g~-lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~l------W 160 (758)
T 3ott_A 91 ADRYEQPETDFPTDVRTMAL-QGDT-LWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQI------Y 160 (758)
T ss_dssp TTEECCCSCCCCSCEEEEEE-ETTE-EEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCE------E
T ss_pred CCEEECcccCCCceEEEEEe-cCCc-EEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCE------E
Confidence 65432211111234666654 3554 5555555 6888998765543 221 112345788887777773 3
Q ss_pred ecCCcceEEEEECCCCcEEeeeecc------CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccccccee
Q 019482 219 QRGDKALLAVYDISTWNKIGHKRLL------RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292 (340)
Q Consensus 219 ~~~~d~~i~i~d~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~ 292 (340)
.++.+ -+..+|..+++... +... ...|.++...+++..|..|+. +-+..+|..+++..... ... ...|.
T Consensus 161 igt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~-~l~-~~~i~ 235 (758)
T 3ott_A 161 VGTYN-GLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTE-AFH-NNSIK 235 (758)
T ss_dssp EEETT-EEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEE-EEE-EEEEE
T ss_pred EEeCC-CHhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEecc-CCC-CCeEE
Confidence 33334 47788887665322 1111 124778887777776666664 45888998776543321 111 34688
Q ss_pred eEEEecCCeEEEEEecCCcEEEEEec
Q 019482 293 LVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 293 ~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
++...++|.+.+.. . +.+.+++..
T Consensus 236 ~i~~d~~g~lWigT-~-~Gl~~~~~~ 259 (758)
T 3ott_A 236 SLALDGNGDLLAGT-D-NGLYVYHND 259 (758)
T ss_dssp EEEECTTCCEEEEE-T-TEEEEECCT
T ss_pred EEEEcCCCCEEEEe-C-CceeEEecC
Confidence 88888888766544 3 456666543
No 316
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.72 E-value=0.0055 Score=50.86 Aligned_cols=98 Identities=10% Similarity=0.098 Sum_probs=46.5
Q ss_pred CCCeEEEEecC-CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-C---------CcEEEEeCC
Q 019482 74 SGDDFVCSTTN-GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-D---------GHLRIMHWP 142 (340)
Q Consensus 74 ~~~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d---------g~i~~~d~~ 142 (340)
++..++.|+.+ ..+.+||+............ .+.. .......+. -+++.++.|+. + ..+.+||+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~-~p~~-~R~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~ 94 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAA-FPGG-PRDQATSAF--IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPK 94 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCC-CTTC-CCBSCEEEE--ETTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCC-CCCC-cCccceEEE--ECCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence 56666666544 46888887642222222211 1100 111112222 25667777765 2 468899988
Q ss_pred CCceeeccccC-ccceeEEEecCCCCeEEEeeCC
Q 019482 143 SLRIILDEPKA-HKSVLDMDFSLDSEFLATTSTD 175 (340)
Q Consensus 143 ~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d 175 (340)
+.+-....... .......+...++++++.|+.+
T Consensus 95 ~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 95 TNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred CCcEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 76533221111 1111111122467788888754
No 317
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.72 E-value=0.013 Score=47.54 Aligned_cols=188 Identities=13% Similarity=0.045 Sum_probs=92.0
Q ss_pred CCCeEEEEec----C-----CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC-----CcEEEE
Q 019482 74 SGDDFVCSTT----N-----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRIM 139 (340)
Q Consensus 74 ~~~~l~~~~~----d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~ 139 (340)
++..++.|+. + ..+.+||+.+.+..... . .. . .......+.+ +++.++.|+.+ ..+.+|
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~-~--~p-~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~y 142 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA-P--MS-V-PRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERY 142 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECC-C--CS-S-CCBTCEEEEE--TTEEEEECCEETTEECCCEEEE
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECC-C--CC-c-CccccEEEEE--CCEEEEEcCCCCCcccccEEEE
Confidence 5666667665 2 46888888776543221 1 11 0 1111122222 66677777643 358889
Q ss_pred eCCCCceeec--cccCccceeEEEecCCCCeEEEeeCC-----CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcc
Q 019482 140 HWPSLRIILD--EPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP 212 (340)
Q Consensus 140 d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (340)
|+.+.+-... ..........+.+ ++++++.|+.+ ..+.+||+.+.+-...-.......-.++... +++.
T Consensus 143 d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i- 218 (308)
T 1zgk_A 143 EPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCI- 218 (308)
T ss_dssp ETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEE-
T ss_pred CCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEE-
Confidence 9877653321 1111112222222 57777777754 4588999876643221111111111122222 3332
Q ss_pred eEEEEEecCCc-----ceEEEEECCCCcEE--eeeeccCCCeeEEEECCCCCEEEEeeCC-----CcEEEEeccCceE
Q 019482 213 FLFCTVQRGDK-----ALLAVYDISTWNKI--GHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEI 278 (340)
Q Consensus 213 ~~~~~~~~~~d-----~~i~i~d~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~ 278 (340)
.+.++.+ ..+.+||+.+.+-. ..+.........+. -++++++.|+.+ ..+.+||+.+.+-
T Consensus 219 ----yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 219 ----YAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp ----EEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred ----EEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 3444432 56899998875422 11111111112222 256777777654 3577788776543
No 318
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.69 E-value=0.015 Score=47.76 Aligned_cols=236 Identities=14% Similarity=0.104 Sum_probs=122.3
Q ss_pred CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC---CCeEEEc---cCCCc
Q 019482 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAG---GVDGH 135 (340)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~---~~dg~ 135 (340)
.-.....++|.|+|+.+++-...|.|++++..++... .+................|+++|+ +.+|+.. ..++.
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~-~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT-ELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe-eecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 3456889999999986666554888888876544321 111110111224567899999995 3344432 23455
Q ss_pred EEEEeCCCC----------ceee-cccc-CccceeEEEecCCCCeEEEeeC-------------CCeEEEEEccCCe---
Q 019482 136 LRIMHWPSL----------RIIL-DEPK-AHKSVLDMDFSLDSEFLATTST-------------DGSARIWKTEDGV--- 187 (340)
Q Consensus 136 i~~~d~~~~----------~~~~-~~~~-~~~~i~~~~~~~~~~~l~~~~~-------------d~~v~iwd~~~~~--- 187 (340)
|.-|.+..+ +.+. .+.. .......|.|.|||.+.++.+. -|.|.-.+....-
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~ 188 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG 188 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence 666665441 1111 1111 1113467999999987777542 2444444443210
Q ss_pred ----eEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc--eEEEEECCCCc------------------EEeeeecc
Q 019482 188 ----AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDISTWN------------------KIGHKRLL 243 (340)
Q Consensus 188 ----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~------------------~~~~~~~~ 243 (340)
....+...+. ....++|+|++.. + ..-.+.++ .|... ..+. ++..+..+
T Consensus 189 nPf~~~~i~a~G~R-Np~Gla~dp~G~L-~---~~d~g~~~~deln~i--~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~ 261 (347)
T 3das_A 189 NPFPGSPVYSYGHR-NVQGLAWDDKQRL-F---ASEFGQDTWDELNAI--KPGDNYGWPEAEGKGGGSGFHDPVAQWSTD 261 (347)
T ss_dssp CSSTTCCEEEBCCS-BCCEEEECTTCCE-E---EEECCSSSCEEEEEE--CTTCBCCTTTCCSSCCCTTCCCCSEEECTT
T ss_pred CCCCCCeEEeeCCC-CcceEEECCCCCE-E---EEecCCCCCceeeEE--cCCCEecCCcccCCCCCccccCCcEecCCC
Confidence 0112222332 3678999998763 1 12222222 23322 2111 11111111
Q ss_pred CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEe---ecccccccccceeeEEEecCCeEEEEEe
Q 019482 244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN---HWSKRLHLGTSIALVEFCPTQRVVLTAS 307 (340)
Q Consensus 244 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 307 (340)
......++|. +|..+...-..+.|....+...... ..+.... ...+..++..|||.++++.+
T Consensus 262 ~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~-~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 262 EASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGE-YGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTT-SSCEEEEEEEETTEEEEEEC
T ss_pred CCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCC-CCCccEEEECCCCcEEEEEc
Confidence 1234556665 3555555555567777777654321 1111121 35799999999998776654
No 319
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.69 E-value=0.0041 Score=46.99 Aligned_cols=181 Identities=8% Similarity=-0.064 Sum_probs=98.8
Q ss_pred CCeEEEccCCCcEEEEeCCCCce--e---eccccC--ccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeE------E
Q 019482 124 GSRFAAGGVDGHLRIMHWPSLRI--I---LDEPKA--HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW------T 190 (340)
Q Consensus 124 ~~~l~~~~~dg~i~~~d~~~~~~--~---~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~------~ 190 (340)
...|+...+| +++.=....+.. - ....+. -..+..++|+|+|.+.++ .+|.++-.+..+.+.. .
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence 3455666666 555544444331 0 011112 236789999999986666 5777666665442111 1
Q ss_pred EeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEe-----ee--eccCCCeeEEEECCCCCEEEEee
Q 019482 191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG-----HK--RLLRKPASVLSISLDGKYLAMGS 263 (340)
Q Consensus 191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~-----~~--~~~~~~i~~~~~s~~~~~l~~~~ 263 (340)
.+-...-....++.|.|+|.. ... .|+.|.-++..+...-. .. ...=..+..+.+.|+|.+.++.
T Consensus 81 ~IG~~Gw~~F~a~~fD~~G~L------Yav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~- 152 (236)
T 1tl2_A 81 KIGNGGWNQFQFLFFDPNGYL------YAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH- 152 (236)
T ss_dssp EEECSCGGGCSEEEECTTSCE------EEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-
T ss_pred EecccccccceEEEECCCCCE------EEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-
Confidence 111001112478999999983 333 56888888764322110 01 1111467899999999887777
Q ss_pred CCCcEEEEeccCceEeecc------cccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482 264 KDGDICVVDVKKMEINHWS------KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA 321 (340)
Q Consensus 264 ~dg~i~i~d~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 321 (340)
|+.++-....+......+ -... -..-+.+.|.+++.+.+.. +| ++|....|.
T Consensus 153 -dg~lyr~~~P~~~~~~wl~~~~~~g~~g-~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~p~ 210 (236)
T 1tl2_A 153 -GQQFYKALPPVSNQDNWLARATKIGQGG-WDTFKFLFFSSVGTLFGVQ--GG--KFYEDYPPS 210 (236)
T ss_dssp -TTEEEEECCCSSTTCCHHHHCEEEESSS-GGGEEEEEECTTSCEEEEE--TT--EEEEESCCC
T ss_pred -CCcEEecCCCCCCCcccccccceeccCC-cceEEEEEECCCCcEEEEe--CC--eEEecCCcc
Confidence 777554433322111111 0011 1234557799999877766 55 677776664
No 320
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.69 E-value=0.02 Score=49.13 Aligned_cols=111 Identities=11% Similarity=0.126 Sum_probs=60.9
Q ss_pred CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeee-ccccCCCCCCCCCeEEEEEecC---CCeEEEccC------
Q 019482 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINL-LAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGV------ 132 (340)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~------ 132 (340)
-.....++|.|+|+++++-...+.|++++..++...... ................|+|+|+ +..|+.+..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 456789999999986665443346877775444322111 1110000113467889999995 555554432
Q ss_pred -------CCcEEEEeCCCC-------ceeec-ccc-CccceeEEEecCCCCeEEEee
Q 019482 133 -------DGHLRIMHWPSL-------RIILD-EPK-AHKSVLDMDFSLDSEFLATTS 173 (340)
Q Consensus 133 -------dg~i~~~d~~~~-------~~~~~-~~~-~~~~i~~~~~~~~~~~l~~~~ 173 (340)
...|.-+++... +.+.. +.. .......|+|.|||.+.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 134555554321 11211 111 112468899999998777654
No 321
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.64 E-value=0.016 Score=46.80 Aligned_cols=187 Identities=9% Similarity=0.046 Sum_probs=94.8
Q ss_pred CCCeEEEEecC----CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC------CcEEEEeCCC
Q 019482 74 SGDDFVCSTTN----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------GHLRIMHWPS 143 (340)
Q Consensus 74 ~~~~l~~~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~~d~~~ 143 (340)
++..++.|+.+ ..+.+||+.+.+..... . .+ ... .....+. -+++.++.|+.+ ..+.+||..+
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~-~--~p-~~r-~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 127 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKL-G--PP-TPR-DSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRT 127 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEE-C--CS-SCC-BSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTT
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECC-C--CC-ccc-cceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCC
Confidence 56677777754 56888888877543221 1 11 011 1112222 266677777755 4588999887
Q ss_pred Cceeec--cccCccceeEEEecCCCCeEEEeeC---------CCeEEEEEccCCeeEEEeecCCCCce-eeEEEccCCCc
Q 019482 144 LRIILD--EPKAHKSVLDMDFSLDSEFLATTST---------DGSARIWKTEDGVAWTFLTRNSDEKI-ELCRFSKDGTK 211 (340)
Q Consensus 144 ~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~---------d~~v~iwd~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~ 211 (340)
.+-... ..........+. -++++++.|+. -..+.+||+.+.+-.. +........ .++... +++.
T Consensus 128 ~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~-~~~i 203 (306)
T 3ii7_A 128 ESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE-LCPMIEARKNHGLVFV-KDKI 203 (306)
T ss_dssp TEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEE-TTEE
T ss_pred CceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEE-CCCccchhhcceEEEE-CCEE
Confidence 653221 111111112222 25677777763 3458899988764322 221111111 122222 3432
Q ss_pred ceEEEEEecCCc-----ceEEEEECCCCc--EEeeeeccCCCeeEEEECCCCCEEEEeeCC-----CcEEEEeccCceE
Q 019482 212 PFLFCTVQRGDK-----ALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEI 278 (340)
Q Consensus 212 ~~~~~~~~~~~d-----~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~ 278 (340)
.+.++.+ ..+.+||+.+.+ .+..+.........+.+ +++.++.|+.+ ..+.+||+.+.+-
T Consensus 204 -----~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 204 -----FAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp -----EEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred -----EEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 3344432 468899988754 22222222222223333 67777888754 4688889887653
No 322
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.59 E-value=0.02 Score=46.20 Aligned_cols=224 Identities=13% Similarity=0.058 Sum_probs=107.9
Q ss_pred CeEEEEecC----CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC-----CcEEEEeCCCCce
Q 019482 76 DDFVCSTTN----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRIMHWPSLRI 146 (340)
Q Consensus 76 ~~l~~~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~ 146 (340)
..++.|+.+ ..+..||+.+.+.... . ..+ ....-.+++. -++..++.|+.+ ..+.+||..+.+-
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~--~-~~p---~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W 89 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQV--A-ELP---SRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQW 89 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEE--C-CCS---SCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEE
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEc--c-cCC---cccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCce
Confidence 344445432 3578888877653221 1 111 1111112222 266677777754 3588899877653
Q ss_pred eec--cccCccceeEEEecCCCCeEEEeeCCC-----eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEe
Q 019482 147 ILD--EPKAHKSVLDMDFSLDSEFLATTSTDG-----SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (340)
Q Consensus 147 ~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 219 (340)
... ..........+. -+++.++.|+.++ .+.+||+.+.+-...-.......-.+++. -+++ + .+.
T Consensus 90 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~-i----yv~ 161 (302)
T 2xn4_A 90 TSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGL-L----YAV 161 (302)
T ss_dssp EEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTE-E----EEE
T ss_pred eeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCE-E----EEE
Confidence 221 111111222222 2577777777553 57888887664322211111111112222 2333 2 233
Q ss_pred cCC-------cceEEEEECCCCcE--EeeeeccCCCeeEEEECCCCCEEEEeeCC-----CcEEEEeccCceEeeccccc
Q 019482 220 RGD-------KALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEINHWSKRL 285 (340)
Q Consensus 220 ~~~-------d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~ 285 (340)
++. ...+.+||+.+.+= +..+.........+. -++++++.|+.+ ..+.+||+.+.+-.......
T Consensus 162 GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~ 239 (302)
T 2xn4_A 162 GGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN 239 (302)
T ss_dssp CCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred eCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCC
Confidence 332 24588999887542 222221111122222 267777777654 46899999886544322111
Q ss_pred ccccceeeEEEecCCeEEEEEecCC-----cEEEEEec
Q 019482 286 HLGTSIALVEFCPTQRVVLTASKEW-----GAMITKLT 318 (340)
Q Consensus 286 ~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iw~~~ 318 (340)
. . .........++++++.|+.++ .+.+|+..
T Consensus 240 ~-~-r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 275 (302)
T 2xn4_A 240 M-C-RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPT 275 (302)
T ss_dssp S-C-CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred C-c-cccCeEEEECCEEEEECCcCCCcccccEEEEcCC
Confidence 1 1 111112234778888888664 36666654
No 323
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.58 E-value=0.0026 Score=48.04 Aligned_cols=143 Identities=11% Similarity=-0.048 Sum_probs=80.4
Q ss_pred CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccc--------eeEEEecCCCCeEEEeeCCCeEEEEEcc
Q 019482 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS--------VLDMDFSLDSEFLATTSTDGSARIWKTE 184 (340)
Q Consensus 113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~l~~~~~d~~v~iwd~~ 184 (340)
..+.+++|+|+|.+.++ .+|.+.-.+..+..... ....... ...+.|.|+|.+.++ .||.|+-++..
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~-W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDN-WMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCC-HHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCccc-ccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 36679999999976555 67877766654422211 1111112 478899999987777 46988877753
Q ss_pred CCeeE------EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE------Eeeee-ccCCCeeEEE
Q 019482 185 DGVAW------TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK------IGHKR-LLRKPASVLS 251 (340)
Q Consensus 185 ~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~------~~~~~-~~~~~i~~~~ 251 (340)
+...- ..+-...=..+..+.|.|+|. +.+.. |+.++-....+... ...+. ..-...+.+.
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~------Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~ 188 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGY------LYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLF 188 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSC------EEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEE
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCce------EEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEE
Confidence 32111 111111113578999999998 44444 66654333322110 01111 1112345567
Q ss_pred ECCCCCEEEEeeCCCcEE
Q 019482 252 ISLDGKYLAMGSKDGDIC 269 (340)
Q Consensus 252 ~s~~~~~l~~~~~dg~i~ 269 (340)
|.|++.+.++. ++.++
T Consensus 189 f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 189 FSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp ECTTSCEEEEE--TTEEE
T ss_pred ECCCCcEEEEe--CCeEE
Confidence 88888777766 66443
No 324
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.0018 Score=52.94 Aligned_cols=115 Identities=12% Similarity=0.056 Sum_probs=70.6
Q ss_pred CeEEEEecCCCEEEEEecCceeeeeecccc-CCCCCCCCCeEEEEEecCCCeEEEc-cCCCcEEEEeCCCCceeeccccC
Q 019482 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKK-MPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIILDEPKA 153 (340)
Q Consensus 76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~ 153 (340)
..++.++.||.|.-+|..+++....+.... .+.+....+. ...++..++.. +.||.|..++..+|.....+...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~----~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~ 86 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPS----RLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIR 86 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSC----TTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCc----cccCCcEEEEEECCCCEEEEEECCCCcEEeeeccc
Confidence 468888999999999998888877775431 1111100000 00123333333 57999999998887544322211
Q ss_pred ccce--eEEEec-----------CCCCeEEEeeCCCeEEEEEccCCeeEEEeecC
Q 019482 154 HKSV--LDMDFS-----------LDSEFLATTSTDGSARIWKTEDGVAWTFLTRN 195 (340)
Q Consensus 154 ~~~i--~~~~~~-----------~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~ 195 (340)
..+ .-+... ..+..+++|+.++.+...|+++|+.+..+...
T Consensus 87 -~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 87 -QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp -HHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred -cceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 111 001111 14567889999999999999999999888643
No 325
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.52 E-value=0.014 Score=48.82 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=75.9
Q ss_pred CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeee------------eeccccCCCCCCCCCeEEEEEec---CCCeEE
Q 019482 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI------------NLLAKKMPPLQDAGPQKCLSFSV---DGSRFA 128 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~------------~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~ 128 (340)
+.|..+..+|+|++||..+..+ |.|-.+..+.... .+..... ......+|..+.|+| .+..|+
T Consensus 66 ~~i~qlvlSpsG~lLAl~g~~~-V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~-~~~~~s~I~qVlWHPl~~~ds~LV 143 (452)
T 3pbp_A 66 DDTFHVISSTSGDLLCLFNDNE-IFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE-EVGPKSSIKKVLFHPKSYRDSCIV 143 (452)
T ss_dssp CTTCEEEECTTSSEEEEECSSE-EEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC-C--CCCCEEEEEECTTBGGGCEEE
T ss_pred CceeEEEECCCCCEEEEecCCe-EEEEEecCccccCcccccccccceeEEEcCCc-ccCCCCceeEEEeccccCCCCeEE
Confidence 3688899999999999887654 9998887332111 1111111 111357899999999 455788
Q ss_pred EccCCCcEEEEeCCCCc-eeeccc------c---CccceeEEEecCCCCeEEEee--CCCeEEEE
Q 019482 129 AGGVDGHLRIMHWPSLR-IILDEP------K---AHKSVLDMDFSLDSEFLATTS--TDGSARIW 181 (340)
Q Consensus 129 ~~~~dg~i~~~d~~~~~-~~~~~~------~---~~~~i~~~~~~~~~~~l~~~~--~d~~v~iw 181 (340)
+-..|+.|++||+.... ....+. + ....|.+++|.+++-.|...+ ..|.|+-.
T Consensus 144 VLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 144 VLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 88999999999997522 111111 1 114688999998776666644 67777653
No 326
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.50 E-value=0.019 Score=48.01 Aligned_cols=152 Identities=11% Similarity=0.025 Sum_probs=94.1
Q ss_pred cCCCCeEEEeeCCCeEEEEEccCCeeEEEeecC---CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc----
Q 019482 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN---- 235 (340)
Q Consensus 163 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~---- 235 (340)
..+|..++.+- ++.||.-++.....-+.+... .-..+..+..+|+|.. ++-..+..|.|-.+..+.
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~l------LAl~g~~~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDL------LCLFNDNEIFVMEVPWGYSNVE 101 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSE------EEEECSSEEEEEECCTTCSCCC
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCE------EEEecCCeEEEEEecCccccCc
Confidence 34555555553 578888887744444444433 1225788999999995 222346678888877321
Q ss_pred --------EEeeeec------cCCCeeEEEECCC---CCEEEEeeCCCcEEEEeccCce-Eeeccc---cc----ccccc
Q 019482 236 --------KIGHKRL------LRKPASVLSISLD---GKYLAMGSKDGDICVVDVKKME-INHWSK---RL----HLGTS 290 (340)
Q Consensus 236 --------~~~~~~~------~~~~i~~~~~s~~---~~~l~~~~~dg~i~i~d~~~~~-~~~~~~---~~----~~~~~ 290 (340)
..+.+.. ...+|..+.|+|- +..|++-..|+.|++||+.... ....+. .. .....
T Consensus 102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~e 181 (452)
T 3pbp_A 102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVND 181 (452)
T ss_dssp CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCC
T ss_pred ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccce
Confidence 1112222 2467999999994 5689999999999999997521 111111 00 00146
Q ss_pred eeeEEEecCCeEEEEE--ecCCcEEEEEecCCC
Q 019482 291 IALVEFCPTQRVVLTA--SKEWGAMITKLTVPA 321 (340)
Q Consensus 291 i~~~~~~~~~~~l~~~--~~dg~i~iw~~~~~~ 321 (340)
|.+++|..++-.|... +.+|.|+-..--.|.
T Consensus 182 v~S~~Fg~~~lTLYvl~~t~~GDIYAlcP~LP~ 214 (452)
T 3pbp_A 182 ITDLEFSKDGLTLYCLNTTEGGDIFAFYPFLPS 214 (452)
T ss_dssp EEEEEECTTSSCEEEEECTTSCEEEEESSCCCS
T ss_pred EEEEEEcCCCcEEEEEecCCCCCEEEECCCCcc
Confidence 8899999988656554 477777655444444
No 327
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.46 E-value=0.03 Score=45.30 Aligned_cols=226 Identities=12% Similarity=-0.031 Sum_probs=109.9
Q ss_pred CCCeEEEEecC----CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC----C-----CcEEEEe
Q 019482 74 SGDDFVCSTTN----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV----D-----GHLRIMH 140 (340)
Q Consensus 74 ~~~~l~~~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d-----g~i~~~d 140 (340)
++..++.|+.+ ..+.+||..+.+.... .. . +....-.+++. .+++.++.|+. + ..+.+||
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~--~~-~---p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d 96 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRL--AD-L---QVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYN 96 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEEC--CC-C---SSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeEC--CC-C---CcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEEC
Confidence 45566666632 3688899877664322 11 1 11111112222 26667777765 2 4588899
Q ss_pred CCCCceeec--cccCccceeEEEecCCCCeEEEeeCC-----CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcce
Q 019482 141 WPSLRIILD--EPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213 (340)
Q Consensus 141 ~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (340)
+.+.+-... ..........+.+ ++++++.|+.+ ..+.+||+.+.+-...-.......-.++... ++..
T Consensus 97 ~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i-- 171 (308)
T 1zgk_A 97 PMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLL-- 171 (308)
T ss_dssp TTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEE--
T ss_pred CCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEE--
Confidence 877653221 1111112222222 57777777643 3688899877643221111111111122222 3332
Q ss_pred EEEEEecCC-----cceEEEEECCCCcEE--eeeeccCCCeeEEEECCCCCEEEEeeCC-----CcEEEEeccCceEeec
Q 019482 214 LFCTVQRGD-----KALLAVYDISTWNKI--GHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEINHW 281 (340)
Q Consensus 214 ~~~~~~~~~-----d~~i~i~d~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~ 281 (340)
.+.++. ...+.+||+.+.+=. ..+.........+.+ ++++++.|+.+ ..+.+||+.+.+-...
T Consensus 172 ---yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 246 (308)
T 1zgk_A 172 ---YAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFV 246 (308)
T ss_dssp ---EEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred ---EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence 233333 246889998775422 111111112222233 66777777654 5699999988764432
Q ss_pred ccccccccceeeEEEecCCeEEEEEecCC-----cEEEEEec
Q 019482 282 SKRLHLGTSIALVEFCPTQRVVLTASKEW-----GAMITKLT 318 (340)
Q Consensus 282 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iw~~~ 318 (340)
..... ...-.+++. -++++++.|+.++ .+.+|++.
T Consensus 247 ~~~p~-~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~ 286 (308)
T 1zgk_A 247 APMKH-RRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPD 286 (308)
T ss_dssp CCCSS-CCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETT
T ss_pred CCCCC-CccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCC
Confidence 21111 111122222 3678888887653 34455543
No 328
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.37 E-value=0.045 Score=45.29 Aligned_cols=194 Identities=9% Similarity=0.003 Sum_probs=103.7
Q ss_pred CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc-eeecc---ccCccceeEEEecCC---CCeEEEeeC----C----Ce
Q 019482 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDE---PKAHKSVLDMDFSLD---SEFLATTST----D----GS 177 (340)
Q Consensus 113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~---~~~~~~i~~~~~~~~---~~~l~~~~~----d----~~ 177 (340)
.....++|.|+|++++ +..+|.|++++ .+++ .+..+ .........|+++|+ +..|..+.. + ..
T Consensus 29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 4568899999997554 45669999997 3443 22211 112346789999997 444444432 3 56
Q ss_pred EEEEEccCC-------eeE-EEeecCCCCceeeEEEccCCCcceEEEEEecCC-------------cceEEEEECCCC--
Q 019482 178 ARIWKTEDG-------VAW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-------------KALLAVYDISTW-- 234 (340)
Q Consensus 178 v~iwd~~~~-------~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------------d~~i~i~d~~~~-- 234 (340)
|..|+.... +.+ ..+..........++|.|||.. .++.+. .+.|.-++....
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~L-----yvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p 181 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGML-----YITTGDAADPRLAQDLSSLAGKILRVDEEGRPP 181 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCE-----EEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcE-----EEEECCCCCCccccCCCCCCeEEEEEcCCCCCC
Confidence 777877643 111 1122111223578999999963 222221 245666665432
Q ss_pred ------cEEeeeeccCCCeeEEEECC-CCCEEEEeeCCC---cEEEEeccCce------------------Eeecccccc
Q 019482 235 ------NKIGHKRLLRKPASVLSISL-DGKYLAMGSKDG---DICVVDVKKME------------------INHWSKRLH 286 (340)
Q Consensus 235 ------~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg---~i~i~d~~~~~------------------~~~~~~~~~ 286 (340)
.......++ .....++|+| +|+++++-...+ .|.+.. .+. +...+ .+
T Consensus 182 ~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~--~~ 256 (354)
T 3a9g_A 182 ADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDT--GS 256 (354)
T ss_dssp TTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEEC--TT
T ss_pred CCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeec--CC
Confidence 111111222 2356799999 566555432221 244332 211 11111 01
Q ss_pred cccceeeEEEe-------cCCeEEEEEecCCcEEEEEec
Q 019482 287 LGTSIALVEFC-------PTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 287 ~~~~i~~~~~~-------~~~~~l~~~~~dg~i~iw~~~ 318 (340)
.......++|. .+|.++++.-..+.|...+++
T Consensus 257 ~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~ 295 (354)
T 3a9g_A 257 ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFG 295 (354)
T ss_dssp CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEEC
T ss_pred CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEEC
Confidence 12357788883 567777776666666666665
No 329
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.30 E-value=0.042 Score=45.10 Aligned_cols=160 Identities=8% Similarity=0.004 Sum_probs=91.3
Q ss_pred cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEE--Eee---cCCCCceeeEEEccC---CCcceEEEEEecCCcceE
Q 019482 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT--FLT---RNSDEKIELCRFSKD---GTKPFLFCTVQRGDKALL 226 (340)
Q Consensus 155 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~---~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~d~~i 226 (340)
.....|+|.|+|.++++--..|.|++++...++... .+. .........++++|+ +..+|+ ..+...++.|
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv--~yt~~~~~~v 109 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYA--YFTSASDNRI 109 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEE--EEECSSSEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEE--EEecCCCCEE
Confidence 456899999999877766558999999876554321 111 122345789999996 343332 2333455667
Q ss_pred EEEECCCC----------cEEe-eee-ccCCCeeEEEECCCCCEEEEeeC-------------CCcEEEEeccCce----
Q 019482 227 AVYDISTW----------NKIG-HKR-LLRKPASVLSISLDGKYLAMGSK-------------DGDICVVDVKKME---- 277 (340)
Q Consensus 227 ~i~d~~~~----------~~~~-~~~-~~~~~i~~~~~s~~~~~l~~~~~-------------dg~i~i~d~~~~~---- 277 (340)
.-|.+... +.+. .+. ...+....+.|.|||.+.++.+. .|.|.-++....-
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 76766542 1111 111 11234567999999987776542 3555555554320
Q ss_pred ---EeecccccccccceeeEEEecCCeEEEEE-ecCCcEEEEEec
Q 019482 278 ---INHWSKRLHLGTSIALVEFCPTQRVVLTA-SKEWGAMITKLT 318 (340)
Q Consensus 278 ---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iw~~~ 318 (340)
....+..++ .....++|+|+|.+.++= +.|+.-.|-.+.
T Consensus 190 Pf~~~~i~a~G~--RNp~Gla~dp~G~L~~~d~g~~~~deln~i~ 232 (347)
T 3das_A 190 PFPGSPVYSYGH--RNVQGLAWDDKQRLFASEFGQDTWDELNAIK 232 (347)
T ss_dssp SSTTCCEEEBCC--SBCCEEEECTTCCEEEEECCSSSCEEEEEEC
T ss_pred CCCCCeEEeeCC--CCcceEEECCCCCEEEEecCCCCCceeeEEc
Confidence 011122233 246789999998766553 334444455554
No 330
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.20 E-value=0.071 Score=51.70 Aligned_cols=236 Identities=10% Similarity=0.064 Sum_probs=131.4
Q ss_pred EEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCcee-
Q 019482 69 IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII- 147 (340)
Q Consensus 69 ~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~- 147 (340)
.-.+|..+.+|.-. ..+++|+|+++........ ...+|.--.|-.+. .|+..+ +..|+-|++......
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~--------~~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~ 139 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--------MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPV 139 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhcccc--------cCCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccH
Confidence 44678777666554 5679999998776544332 22455555665443 444443 457999999753333
Q ss_pred eccccCc----cceeEEEecCCCCeEEEee-------CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEE
Q 019482 148 LDEPKAH----KSVLDMDFSLDSEFLATTS-------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC 216 (340)
Q Consensus 148 ~~~~~~~----~~i~~~~~~~~~~~l~~~~-------~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 216 (340)
..+..|. ..|.....+++.++++..+ -.|.+.+|..+.+.. +.+. +|.+....+....+.....++|
T Consensus 140 k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~ie-gha~~F~~~~~~~~~~~~~l~~ 217 (1630)
T 1xi4_A 140 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIE-GHAASFAQFKMEGNAEESTLFC 217 (1630)
T ss_pred HHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhh-HhHhhhheeccCCCCCCceEEE
Confidence 3333332 3677788899998876543 357889998865432 2222 2322232232221111112333
Q ss_pred EEec-CCcceEEEEECCCC---cEEe------eeecc---CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc
Q 019482 217 TVQR-GDKALLAVYDISTW---NKIG------HKRLL---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK 283 (340)
Q Consensus 217 ~~~~-~~d~~i~i~d~~~~---~~~~------~~~~~---~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 283 (340)
++.- ...+.++|.++... .+.. .+... ..-..++..++.-..+...+.-|.|++||+.++.++..-.
T Consensus 218 f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 218 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred EEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc
Confidence 3322 22468888888543 1110 01111 1123456778877888889999999999999998875432
Q ss_pred ccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482 284 RLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 284 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
.. ..+|-..+-+....-++.....|.|.--.++.
T Consensus 298 -is-~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 298 -IS-GETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred -cc-CCceEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence 22 23444444333333344444666655555543
No 331
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.18 E-value=0.064 Score=43.24 Aligned_cols=226 Identities=12% Similarity=0.064 Sum_probs=129.9
Q ss_pred CceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCC
Q 019482 35 SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGP 114 (340)
Q Consensus 35 ~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 114 (340)
..+++++++.+. ....+.+ ..+|.--.|-. .+.|+..+... |+-|+++......+....+. .+ ....
T Consensus 87 ~~LQiFnletK~------klks~~~---~e~VvfWkWis-~~~L~lVT~ta-VyHWs~~~~s~P~kvFdR~~-~L-~~~Q 153 (365)
T 2xzh_A 87 KTLQIFNIEMKS------KMKAHTM---TDDVTFWKWIS-LNTVALVTDNA-VYHWSMEGESQPVKMFDRHS-SL-AGCQ 153 (365)
T ss_dssp TEEEEEETTTTE------EEEEEEC---SSCEEEEEECS-SSEEEEEESSE-EEEEESSTTCCCEEEEECCG-GG-TTCE
T ss_pred CeEEEechHHhh------hhcceec---CCccEEEEecC-CCeEEEEcCCc-EEEEcccCCCCCceeeecch-hc-ccce
Confidence 458888887331 1122222 35677777763 44566666544 99999986544433332211 11 2356
Q ss_pred eEEEEEecCCCeEEEcc-------CCCcEEEEeCCCCceeeccccCccceeEEEecCC---CCeEEEeeC---CCeEEEE
Q 019482 115 QKCLSFSVDGSRFAAGG-------VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD---SEFLATTST---DGSARIW 181 (340)
Q Consensus 115 v~~~~~~~~~~~l~~~~-------~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~---d~~v~iw 181 (340)
|..-..+++.++++..+ -.|.+.+|..+.+. .+.+.+|......+....+ .+.++.+.. .+.++|-
T Consensus 154 IInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIi 232 (365)
T 2xzh_A 154 IINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHII 232 (365)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEE
Confidence 77777788888776543 23778999987543 3345555443333332211 123443332 2578888
Q ss_pred EccCC---ee-----EEEeecC---CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEE
Q 019482 182 KTEDG---VA-----WTFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVL 250 (340)
Q Consensus 182 d~~~~---~~-----~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~ 250 (340)
++... .+ ...+... ...-.-++..++.... +..-+.-|.|++||+.++.++..-+....+|...
T Consensus 233 Ei~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygv-----iyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~t 307 (365)
T 2xzh_A 233 EVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV-----VFLITKYGYIHLYDLETGTCIYMNRISGETIFVT 307 (365)
T ss_dssp ECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTE-----EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCE-----EEEEeCCcEEEEEEcccCcEEEEeccCCCceEEe
Confidence 87432 11 1111111 1223445556655543 3444567899999999999998888777777766
Q ss_pred EECCCCCEEEEeeCCCcEEEEeccCceEe
Q 019482 251 SISLDGKYLAMGSKDGDICVVDVKKMEIN 279 (340)
Q Consensus 251 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~ 279 (340)
+-+....=++.....|.|.-..++....+
T Consensus 308 a~~~~~~Gi~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 308 APHEATAGIIGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp EEEGGGTEEEEEETTCEEEEEEECTTTHH
T ss_pred cccCCCCcEEEEcCCCEEEEEEECcccEe
Confidence 66555445555667888777776665543
No 332
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.14 E-value=0.079 Score=43.78 Aligned_cols=57 Identities=14% Similarity=0.116 Sum_probs=29.5
Q ss_pred eEEEEECCCCc--EEeeeeccCCCeeEEEECCCCCEEEEeeCCC------cEEEEeccCceEeeccc
Q 019482 225 LLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSKDG------DICVVDVKKMEINHWSK 283 (340)
Q Consensus 225 ~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~ 283 (340)
.+.+||+.+.+ .+..+......-.+ ...+++.++.|+.++ .+.++++++++......
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEE--EEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred eEEEEecCCCceeeCCCCCCCccccee--EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 57789987643 33333222222222 334677888887643 35666887777655443
No 333
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.14 E-value=0.16 Score=46.88 Aligned_cols=233 Identities=6% Similarity=-0.017 Sum_probs=125.8
Q ss_pred CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC
Q 019482 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS 143 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 143 (340)
..|.++.-.++|...+ |+..| +..++..+++......... ........|.++...+++. |-.|+..+-|..+|..+
T Consensus 373 ~~v~~i~~d~~g~lWi-gt~~G-L~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~ 448 (758)
T 3ott_A 373 NRIRHIYEDKEQQLWI-ATDGS-INRYDYATRQFIHYNIVDN-TGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHK 448 (758)
T ss_dssp SCEEEEEECTTSCEEE-EETTE-EEEEETTTTEEEEEEEECC-C--CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHH
T ss_pred CceEEEEECCCCCEEE-EeCCc-HhhcCcCCCcEEEeecCCC-cCCCCCceEEEEEEcCCCC-EEEEECCCceEEEcccc
Confidence 3588888877776444 45444 9999987765432211111 0001234688888777775 44456555688888542
Q ss_pred C-----ceee---cc---cc-CccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecC--CCCceeeEEEccCC
Q 019482 144 L-----RIIL---DE---PK-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN--SDEKIELCRFSKDG 209 (340)
Q Consensus 144 ~-----~~~~---~~---~~-~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~ 209 (340)
. .... .+ .+ ....|.++...++|++.+.++..+-|..+|.++++........ ....+.++....+|
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g 528 (758)
T 3ott_A 449 LMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDG 528 (758)
T ss_dssp HHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTS
T ss_pred ccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCC
Confidence 1 1110 00 11 1125888888888887653333455888998776554322111 12356778777778
Q ss_pred CcceEEEEEecCCcceEEEEECCCCcEEee-e-eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccc
Q 019482 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGH-K-RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL 287 (340)
Q Consensus 210 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 287 (340)
. +..++..| +..||..+.+.... . ......+.++... +| .|..++.+| |..||..+.+....-..
T Consensus 529 ~------lWigt~~G-l~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g-~lWi~t~~G-l~~~~~~~~~~~~~~~~--- 595 (758)
T 3ott_A 529 L------LWVGFHGG-VMRINPKDESQQSISFGSFSNNEILSMTCV-KN-SIWVSTTNG-LWIIDRKTMDARQQNMT--- 595 (758)
T ss_dssp C------EEEEETTE-EEEECC--CCCCBCCCCC---CCEEEEEEE-TT-EEEEEESSC-EEEEETTTCCEEEC--C---
T ss_pred C------EEEEecCc-eEEEecCCCceEEecccCCCccceEEEEEC-CC-CEEEECCCC-eEEEcCCCceeEEecCC---
Confidence 7 34444444 88888766543211 0 1112457777653 55 555555555 88889887665432111
Q ss_pred ccceeeEEEe-cCCeEEEEEecCCcEEE
Q 019482 288 GTSIALVEFC-PTQRVVLTASKEWGAMI 314 (340)
Q Consensus 288 ~~~i~~~~~~-~~~~~l~~~~~dg~i~i 314 (340)
...+....+. ++|. |..|+.+|-+.+
T Consensus 596 ~~~~~~~~~~~~~G~-l~fG~~~Gl~~f 622 (758)
T 3ott_A 596 NKRFTSLLFDPKEDC-VYLGGADGFGIS 622 (758)
T ss_dssp CCCCSEEEEETTTTE-EEEECBSEEEEE
T ss_pred CCceeeeEEECCCCc-EEEecCCceEEE
Confidence 2234444444 4665 566666665443
No 334
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.12 E-value=0.077 Score=42.97 Aligned_cols=212 Identities=10% Similarity=-0.000 Sum_probs=101.7
Q ss_pred EEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC----C-------CcEEEEeCCCCce
Q 019482 78 FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV----D-------GHLRIMHWPSLRI 146 (340)
Q Consensus 78 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d-------g~i~~~d~~~~~~ 146 (340)
++.|+ ..+.+||..+.+..... .+. +. ..........+++.++.|+. + ..+..||..+.+-
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~----~~~-p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W 79 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCAS----LSS-QV-PKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW 79 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEE----CCC-CS-CSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE
T ss_pred EEEcC--CceEEECCCCCeEecCC----CCC-CC-CccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE
Confidence 33444 45889999887754211 110 01 11222233346777777763 1 1277888877653
Q ss_pred eec--cccCccceeEEEecCCCCeEEEeeCC--------CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEE
Q 019482 147 ILD--EPKAHKSVLDMDFSLDSEFLATTSTD--------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC 216 (340)
Q Consensus 147 ~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d--------~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 216 (340)
... ..........+.+ +++.++.|+.+ ..+.+||..+.+-. .+...........+...+++.
T Consensus 80 ~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~~~~~i----- 151 (315)
T 4asc_A 80 LGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG-ESDPLPYVVYGHTVLSHMDLV----- 151 (315)
T ss_dssp EECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEE-ECCCCSSCCBSCEEEEETTEE-----
T ss_pred EECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEe-ECCCCCCcccceeEEEECCEE-----
Confidence 221 1111111112222 56777777732 45889998876422 221111111111122234432
Q ss_pred EEecCC------cceEEEEECCCCcE--EeeeeccCCCeeEEEECCCCCEEEEeeCCC-----cEEEEeccCceEeeccc
Q 019482 217 TVQRGD------KALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDG-----DICVVDVKKMEINHWSK 283 (340)
Q Consensus 217 ~~~~~~------d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~ 283 (340)
.+.++. -..+.+||+.+.+= +..+......-..+. -+++.++.|+.++ .+.+||+.+.+-.....
T Consensus 152 yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 229 (315)
T 4asc_A 152 YVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA 229 (315)
T ss_dssp EEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC
T ss_pred EEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCC
Confidence 334443 24688999887542 221211111112222 2667777777654 58889998865443221
Q ss_pred ccccccceeeEEEecCCeEEEEEecC
Q 019482 284 RLHLGTSIALVEFCPTQRVVLTASKE 309 (340)
Q Consensus 284 ~~~~~~~i~~~~~~~~~~~l~~~~~d 309 (340)
... ...-.+++ .-++++++.|+.+
T Consensus 230 ~p~-~r~~~~~~-~~~~~l~v~GG~~ 253 (315)
T 4asc_A 230 FPQ-ERSSLSLV-SLVGTLYAIGGFA 253 (315)
T ss_dssp CSS-CCBSCEEE-EETTEEEEEEEEE
T ss_pred CCC-cccceeEE-EECCEEEEECCcc
Confidence 111 11112222 3367888888764
No 335
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.09 E-value=0.094 Score=43.37 Aligned_cols=46 Identities=9% Similarity=-0.032 Sum_probs=28.4
Q ss_pred EEecCCcceEEEEECCCCcEEeeee---ccCCCeeEEEECCCCCEEEEe
Q 019482 217 TVQRGDKALLAVYDISTWNKIGHKR---LLRKPASVLSISLDGKYLAMG 262 (340)
Q Consensus 217 ~~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~ 262 (340)
+++....+.|...++..++...... .....+..+++.|||.+.++.
T Consensus 292 ~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 292 FIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp EEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred EEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence 3444556777777777554332222 223478899999999866643
No 336
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=97.06 E-value=0.12 Score=44.30 Aligned_cols=111 Identities=12% Similarity=0.079 Sum_probs=60.5
Q ss_pred CCeeEEEEcCCCC-eEEEEecCCCEEEEEecCceeeeeeccccCCCC-----CCCCCeEEEEEecC---CCeEEEc-cC-
Q 019482 64 GDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL-----QDAGPQKCLSFSVD---GSRFAAG-GV- 132 (340)
Q Consensus 64 ~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~---~~~l~~~-~~- 132 (340)
.....|+|.|+|. .|+++.+.|.|++++.........+........ ........|+|+|+ ..+|++. +.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4578999999996 566778889999997543211111111000000 12467889999996 2233332 21
Q ss_pred -C----------CcEEEEeCCCC----------ceeeccc--cCccceeEEEecCCCCeEEEeeC
Q 019482 133 -D----------GHLRIMHWPSL----------RIILDEP--KAHKSVLDMDFSLDSEFLATTST 174 (340)
Q Consensus 133 -d----------g~i~~~d~~~~----------~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~ 174 (340)
+ ..|.-|.+..+ +.+.... ........|+|.|||.+.++.+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 13444555321 1222221 11124578999999987776554
No 337
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.97 E-value=0.11 Score=42.09 Aligned_cols=191 Identities=16% Similarity=0.064 Sum_probs=90.6
Q ss_pred EcCCCCeEEEEec-----C--C----CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC------
Q 019482 71 VNPSGDDFVCSTT-----N--G----GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------ 133 (340)
Q Consensus 71 ~~~~~~~l~~~~~-----d--~----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------ 133 (340)
...++..++.|+. . . .+..||..+.+... + .. .+....-.+++. -+++.++.|+.+
T Consensus 42 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~-~~----~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~ 114 (315)
T 4asc_A 42 VTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-M-PP----LPSPRCLFGLGE-ALNSIYVVGGREIKDGER 114 (315)
T ss_dssp ECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-C-CC----BSSCEESCEEEE-ETTEEEEECCEESSTTCC
T ss_pred EEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-C-CC----CCcchhceeEEE-ECCEEEEEeCCcCCCCCc
Confidence 3346777777773 1 1 26677877665422 1 11 111111112222 256666777632
Q ss_pred --CcEEEEeCCCCceee--ccccCccceeEEEecCCCCeEEEeeC-C-----CeEEEEEccCCeeEEEeecCCCCce-ee
Q 019482 134 --GHLRIMHWPSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTST-D-----GSARIWKTEDGVAWTFLTRNSDEKI-EL 202 (340)
Q Consensus 134 --g~i~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~-d-----~~v~iwd~~~~~~~~~~~~~~~~~v-~~ 202 (340)
..+.+||..+.+-.. ..+........+ ..++++++.|+. + ..+.+||+.+.+-.. +........ .+
T Consensus 115 ~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~ 191 (315)
T 4asc_A 115 CLDSVMCYDRLSFKWGESDPLPYVVYGHTVL--SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE-LAPMQTARSLFG 191 (315)
T ss_dssp BCCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEE-CCCCSSCCBSCE
T ss_pred ccceEEEECCCCCcEeECCCCCCcccceeEE--EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEE-CCCCCCchhceE
Confidence 458899988765322 111111111222 235677777775 2 468999988764322 211111111 12
Q ss_pred EEEccCCCcceEEEEEecCC-----cceEEEEECCCCcE--EeeeeccCCCeeEEEECCCCCEEEEeeCC----------
Q 019482 203 CRFSKDGTKPFLFCTVQRGD-----KALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKD---------- 265 (340)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---------- 265 (340)
+.. -+++ ++ +.++. ...+.+||+.+.+= +............+. -++++++.|+.+
T Consensus 192 ~~~-~~~~-iy----v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~ 263 (315)
T 4asc_A 192 ATV-HDGR-II----VAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS--LVGTLYAIGGFATLETESGELV 263 (315)
T ss_dssp EEE-ETTE-EE----EEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEE
T ss_pred EEE-ECCE-EE----EEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE--ECCEEEEECCccccCcCCcccc
Confidence 222 2333 22 22222 23688999887542 221111111122222 256777777653
Q ss_pred ----CcEEEEeccCceEe
Q 019482 266 ----GDICVVDVKKMEIN 279 (340)
Q Consensus 266 ----g~i~i~d~~~~~~~ 279 (340)
..+.+||+.+.+-.
T Consensus 264 ~~~~~~v~~yd~~~~~W~ 281 (315)
T 4asc_A 264 PTELNDIWRYNEEEKKWE 281 (315)
T ss_dssp EEEEEEEEEEETTTTEEE
T ss_pred ccccCcEEEecCCCChhh
Confidence 23667887776543
No 338
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.87 E-value=0.18 Score=43.23 Aligned_cols=98 Identities=14% Similarity=0.194 Sum_probs=57.0
Q ss_pred CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCcee--ecccc------CccceeEEEecCC---CCeEEEeeC-------
Q 019482 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII--LDEPK------AHKSVLDMDFSLD---SEFLATTST------- 174 (340)
Q Consensus 113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~--~~~~~------~~~~i~~~~~~~~---~~~l~~~~~------- 174 (340)
.....|+|.|+|+++++-...+.|++++..+++.. ..+.. .......|+|+|+ +..|..+..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 35679999999987776544457888876544432 22211 2346779999995 444444332
Q ss_pred ------CCeEEEEEccCC-------eeEE-EeecCCCCceeeEEEccCCC
Q 019482 175 ------DGSARIWKTEDG-------VAWT-FLTRNSDEKIELCRFSKDGT 210 (340)
Q Consensus 175 ------d~~v~iwd~~~~-------~~~~-~~~~~~~~~v~~~~~~~~~~ 210 (340)
...|.-++...+ +.+. .+..........++|.|||.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~ 156 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK 156 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe
Confidence 235655665432 1111 12222223478899999996
No 339
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.83 E-value=0.14 Score=41.41 Aligned_cols=196 Identities=14% Similarity=0.046 Sum_probs=89.7
Q ss_pred EcCCCCeEEEEec----CC-------CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC------
Q 019482 71 VNPSGDDFVCSTT----NG-------GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------ 133 (340)
Q Consensus 71 ~~~~~~~l~~~~~----d~-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------ 133 (340)
...++..++.|+. ++ .+..||..+.+.... .. .+....-.+++.. +++.++.|+.+
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~--~~----~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~ 125 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL--PP----LPSARCLFGLGEV-DDKIYVVAGKDLQTEAS 125 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC--SC----BSSCBCSCEEEEE-TTEEEEEEEEBTTTCCE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC--CC----CCccccccceEEE-CCEEEEEcCccCCCCcc
Confidence 3446777777773 11 166777766654221 11 1111111122222 56666776653
Q ss_pred -CcEEEEeCCCCceeec--cccCccceeEEEecCCCCeEEEeeC------CCeEEEEEccCCeeEEEeecCCCCceeeEE
Q 019482 134 -GHLRIMHWPSLRIILD--EPKAHKSVLDMDFSLDSEFLATTST------DGSARIWKTEDGVAWTFLTRNSDEKIELCR 204 (340)
Q Consensus 134 -g~i~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~ 204 (340)
..+.+||+.+.+-... ......... +. ..++++++.|+. -..+.+||+.+.+-...-.......-.++.
T Consensus 126 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 203 (318)
T 2woz_A 126 LDSVLCYDPVAAKWSEVKNLPIKVYGHN-VI-SHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVA 203 (318)
T ss_dssp EEEEEEEETTTTEEEEECCCSSCEESCE-EE-EETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred cceEEEEeCCCCCEeECCCCCCcccccE-EE-EECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEE
Confidence 2478889877653321 111111111 22 246777777764 235899998876432221111111111222
Q ss_pred EccCCCcceEEEEEecC-CcceEEEEECCCCcE--EeeeeccCCCeeEEEECCCCCEEEEeeCC--------------Cc
Q 019482 205 FSKDGTKPFLFCTVQRG-DKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKD--------------GD 267 (340)
Q Consensus 205 ~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--------------g~ 267 (340)
. -+++ ++++...... ....+.+||+.+.+= +..+.........+. .++++++.|+.+ ..
T Consensus 204 ~-~~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~ 279 (318)
T 2woz_A 204 I-HKGK-IVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVND 279 (318)
T ss_dssp E-ETTE-EEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCC
T ss_pred E-ECCE-EEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEECCeeccCCCCceeccceeee
Confidence 2 2333 2221111110 124577899887542 222211111112222 356777777653 35
Q ss_pred EEEEeccCceEe
Q 019482 268 ICVVDVKKMEIN 279 (340)
Q Consensus 268 i~i~d~~~~~~~ 279 (340)
+.+||+.+.+-.
T Consensus 280 v~~yd~~~~~W~ 291 (318)
T 2woz_A 280 IWKYEDDKKEWA 291 (318)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEeCCCCEeh
Confidence 778888776543
No 340
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.80 E-value=0.29 Score=44.57 Aligned_cols=231 Identities=9% Similarity=0.021 Sum_probs=111.9
Q ss_pred CCCCeEEEEecC----CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCC------CcEEEEeC
Q 019482 73 PSGDDFVCSTTN----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVD------GHLRIMHW 141 (340)
Q Consensus 73 ~~~~~l~~~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~~~d~ 141 (340)
.++..++.|+.+ ..+.+||..+.+..................-.+++..+ +++.++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777753 46888998876543222010000011111123333333 67777777654 35788998
Q ss_pred CCCceeec--cccCccceeEEEecCCCCeEEEeeCCC--eEEEEEccCCeeEEEeec-----CCCCceeeEEEccCCCcc
Q 019482 142 PSLRIILD--EPKAHKSVLDMDFSLDSEFLATTSTDG--SARIWKTEDGVAWTFLTR-----NSDEKIELCRFSKDGTKP 212 (340)
Q Consensus 142 ~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~--~v~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~ 212 (340)
.+.+-... ....... .+++.-.+++.++.|+.++ .+.+||..+.+-. .+.. ........+.+..+...+
T Consensus 476 ~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~-~~~~~g~~p~~r~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFK-DVTPKDEFFQNSLVSAGLEFDPVSKQG 553 (695)
T ss_dssp TTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEE-ECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred CCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceE-EccCCCCCCCcccceeEEEEeCCCCEE
Confidence 87543221 2111111 2223323788888887654 6999998876432 2211 011112224445442332
Q ss_pred eEEEEEecCC-------cceEEEEECCCCcE-----Eeeeec---cCCCeeEEEECCCCCEEEEeeC--------CCcEE
Q 019482 213 FLFCTVQRGD-------KALLAVYDISTWNK-----IGHKRL---LRKPASVLSISLDGKYLAMGSK--------DGDIC 269 (340)
Q Consensus 213 ~~~~~~~~~~-------d~~i~i~d~~~~~~-----~~~~~~---~~~~i~~~~~s~~~~~l~~~~~--------dg~i~ 269 (340)
.+.++. ...+.+||+.+.+- -..+.. ....-.++....+++.++.|+. ...+.
T Consensus 554 ----yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 554 ----IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp ----EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred ----EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 233433 24688999887651 111111 1111123333333777777774 34699
Q ss_pred EEeccCceEeeccccccc-----ccc-eeeEEEecCCeEEEEEecC
Q 019482 270 VVDVKKMEINHWSKRLHL-----GTS-IALVEFCPTQRVVLTASKE 309 (340)
Q Consensus 270 i~d~~~~~~~~~~~~~~~-----~~~-i~~~~~~~~~~~l~~~~~d 309 (340)
+||+.+.+-......... ... -.++...+++++++.||..
T Consensus 630 ~yd~~t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~ 675 (695)
T 2zwa_A 630 SLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGA 675 (695)
T ss_dssp EEETTTTEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCEE
T ss_pred EEECCCCeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCCc
Confidence 999988765421100000 000 1233444566777877753
No 341
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.78 E-value=0.15 Score=41.02 Aligned_cols=213 Identities=10% Similarity=0.066 Sum_probs=116.4
Q ss_pred EEEcCCCCeEEEEecC--------------CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc---
Q 019482 69 IAVNPSGDDFVCSTTN--------------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--- 131 (340)
Q Consensus 69 ~~~~~~~~~l~~~~~d--------------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--- 131 (340)
--++++|++|+.+... ..|+..+++..+. ..... . .+..|++++++|+-..
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~--~~l~~--------~--~~~~~s~~g~~Iy~~~~~~ 125 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS--TVLDP--------D--PCIYASLIGNYIYYLHYDT 125 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC--EEEEC--------S--CEEEEEEETTEEEEEEESS
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc--eEeec--------C--CccEEEEeCCEEEEEeecC
Confidence 4567889988876543 2455555555432 22111 1 2337888888888765
Q ss_pred -CCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeC-CCeEEEEEccCCeeEEEeecCCCCceeeEEEccCC
Q 019482 132 -VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209 (340)
Q Consensus 132 -~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (340)
....|...++.... ...+..+. + ..++|+++.|.-.+. ...|..-++..+.....+. +... ..+.|++
T Consensus 126 ~~~~~Iy~~~~dGs~-~~~lt~~~--~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~----~~~~-~~~~P~g 195 (302)
T 3s25_A 126 QTATSLYRIRIDGEE-KKKIKNHY--L--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD----CNCY-KPVVLDD 195 (302)
T ss_dssp SSCEEEEEEETTSCC-CEEEESSC--C--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC----SCEE-EEEEEET
T ss_pred CCCceEEEEECCCCC-eEEEeCCC--c--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC----CCcc-ceeeecC
Confidence 23456666665333 33333332 2 456788888876664 5678888877655433322 1222 3456898
Q ss_pred CcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeC--CCcEEEEeccCceEeeccccccc
Q 019482 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK--DGDICVVDVKKMEINHWSKRLHL 287 (340)
Q Consensus 210 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~ 287 (340)
..++. ........|..-++...... .+. ...+ ..|+|++++|+.+.. .+.|..-++......... .
T Consensus 196 ~~iy~---t~~~~~~~I~~~~ldG~~~~-~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~-~--- 263 (302)
T 3s25_A 196 TNVYY---MDVNRDNAIVHVNINNPNPV-VLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELA-K--- 263 (302)
T ss_dssp TEEEE---EEGGGTTEEEEECSSSCCCE-ECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCCCEEEE-E---
T ss_pred CEEEE---EEcCCCcEEEEEECCCCCeE-EEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCccEEee-C---
Confidence 87432 11122256777777765532 222 2233 347888988887632 456777777654433322 1
Q ss_pred ccceeeEEEecCCeEEEEEec-CCcEEEEEecCC
Q 019482 288 GTSIALVEFCPTQRVVLTASK-EWGAMITKLTVP 320 (340)
Q Consensus 288 ~~~i~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~ 320 (340)
..+. .+++.+.+|+-... .+. |+.++..
T Consensus 264 -~~~~--~i~i~~d~Iy~td~~~~~--i~~~~~d 292 (302)
T 3s25_A 264 -GEFC--NINVTSQYVYFTDFVSNK--EYCTSTQ 292 (302)
T ss_dssp -SCEE--EEEECSSEEEEEETTTCC--EEEEESS
T ss_pred -Cccc--eEEEeCCEEEEEECCCCe--EEEEECC
Confidence 1233 45556666666553 344 5555543
No 342
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.76 E-value=0.44 Score=46.08 Aligned_cols=247 Identities=9% Similarity=0.058 Sum_probs=131.8
Q ss_pred CceeEEeeeeecC--CCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEc---CCCCeE
Q 019482 4 GGTVTCGSWIKRP--ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVN---PSGDDF 78 (340)
Q Consensus 4 ~~~v~~~~w~~~~--~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~l 78 (340)
-+||..++-.... +..+++++.| .+.++.++++...-..... ....+.+ -..++.+... +...+|
T Consensus 374 ~~PI~D~~v~d~~~~~~~~i~~~sG----~g~~gsL~~lr~Gi~~~~~-----~~~~l~g-v~~iWtl~~~~~~~~~~yL 443 (1158)
T 3ei3_A 374 LGPIVDMCVVDLERQGQGQLVTCSG----AFKEGSLRIIRNGIGIHEH-----ASIDLPG-IKGLWPLRSDPNRETDDTL 443 (1158)
T ss_dssp CCSEEEEEEECTTSSSCCEEEEEEC----CGGGCEEEEEEESBCEEEE-----EEECCCS-CCEEEEECCCSSCSSCCEE
T ss_pred cCCceeEEEEccCCCCCCeEEEEEC----cCCCCeEEEEecCCCEEEE-----EeecCCC-ccEEEEEeecCCCCCCCEE
Confidence 4677777765422 2235555555 4567778887665222111 1122332 2445555543 235677
Q ss_pred EEEecCCCEEEEEecCceeeeeeccccCCCCCCC-CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccC-ccc
Q 019482 79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA-GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA-HKS 156 (340)
Q Consensus 79 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~ 156 (340)
+.+..+.+ .|+.+..... .... ...+... ..+.+-.+ .++ .++=... ..|++.+......+...... ...
T Consensus 444 vlS~~~~T-~Vl~i~~e~v-eev~---~~gf~~~~~TL~~~~l-~~~-~ivQVt~-~~Irli~~~~~~~~~~w~~p~~~~ 515 (1158)
T 3ei3_A 444 VLSFVGQT-RVLMLNGEEV-EETE---LMGFVDDQQTFFCGNV-AHQ-QLIQITS-ASVRLVSQEPKALVSEWKEPQAKN 515 (1158)
T ss_dssp EEEETTEE-EEEEEETTEE-EEEC---CTTCCSSSCEEEEEEE-TTT-EEEEEES-SCEEEEESSSCCEEEEECCTTCCC
T ss_pred EEECCCCe-EEEEEeCCcc-cccc---cccccCCCCcEEEEEc-CCC-eEEEEec-CEEEEEECCCCeEEEEEECCCCCE
Confidence 77766664 6777644322 1221 1111111 22222222 233 4444443 34778776654445444332 235
Q ss_pred eeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCC----cceEEEEEecC-CcceEEEEEC
Q 019482 157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT----KPFLFCTVQRG-DKALLAVYDI 231 (340)
Q Consensus 157 i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~-~d~~i~i~d~ 231 (340)
|...+.+ +.+++.++ ++.+.++.+..++............|.|+++.|... ..+ ++.+. .|++++++++
T Consensus 516 I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~---~aVg~~~d~tv~I~sL 589 (1158)
T 3ei3_A 516 ISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPL---CAIGLWTDISARILKL 589 (1158)
T ss_dssp CCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSE---EEEEETTTTEEEEEET
T ss_pred EEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccE---EEEEECCCCEEEEEEC
Confidence 7666655 34566654 678888888766433322223345799999986431 111 45555 4999999999
Q ss_pred CCCcEEeeeeccC-CCeeEEEEC--CCCCEEEEeeCCCcEEEEecc
Q 019482 232 STWNKIGHKRLLR-KPASVLSIS--LDGKYLAMGSKDGDICVVDVK 274 (340)
Q Consensus 232 ~~~~~~~~~~~~~-~~i~~~~~s--~~~~~l~~~~~dg~i~i~d~~ 274 (340)
...+.+....... ....++.+. ....+|.+|-.||.+.-+.+.
T Consensus 590 ~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 590 PSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp TTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred CCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence 9877664433321 233444332 234578889899987665543
No 343
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.70 E-value=0.024 Score=46.29 Aligned_cols=141 Identities=12% Similarity=0.084 Sum_probs=81.8
Q ss_pred eEEEccCCCcEEEEeCCCCceeeccccCc-cceeEEEe--cC-CCCeEEEe-eCCCeEEEEEccCCeeEEEeecCCCCce
Q 019482 126 RFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDMDF--SL-DSEFLATT-STDGSARIWKTEDGVAWTFLTRNSDEKI 200 (340)
Q Consensus 126 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~i~~~~~--~~-~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~v 200 (340)
.++.++.||.|.-+|.++|+...++.... .++....- .+ ++..++.. +.||.|..++.++|.....+.....-..
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 67888999999999999999888775441 22222110 11 23334343 5899999999988865544432110000
Q ss_pred eeEEE------------ccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCC--C-----eeEEEEC-----CCC
Q 019482 201 ELCRF------------SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK--P-----ASVLSIS-----LDG 256 (340)
Q Consensus 201 ~~~~~------------~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~-----i~~~~~s-----~~~ 256 (340)
.-+.. +.++. +++++.++.+...|+++|+.+..+..... . ..+.... -.+
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~------Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~ 165 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEK------VYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECE 165 (339)
T ss_dssp CSEEEECC----------CCEE------EEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------C
T ss_pred cccccCCCceeecccccccCCE------EEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCC
Confidence 11221 12333 68889999999999999999877654321 0 0011110 123
Q ss_pred CEEEEeeCCCcEEEEe
Q 019482 257 KYLAMGSKDGDICVVD 272 (340)
Q Consensus 257 ~~l~~~~~dg~i~i~d 272 (340)
..++.+..+..+.+.+
T Consensus 166 ~~v~ig~~~y~v~~~~ 181 (339)
T 2be1_A 166 NMIVIGKTIFELGIHS 181 (339)
T ss_dssp CEEEEEEEEEECEECC
T ss_pred CeEEEecceEEEEEEC
Confidence 5677776666666655
No 344
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.60 E-value=0.21 Score=40.37 Aligned_cols=205 Identities=11% Similarity=0.051 Sum_probs=96.1
Q ss_pred EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC----CC-------cEEEEeCCCCceeec--cccC
Q 019482 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV----DG-------HLRIMHWPSLRIILD--EPKA 153 (340)
Q Consensus 87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg-------~i~~~d~~~~~~~~~--~~~~ 153 (340)
+..||..+.+......... . ..........++..++.|+. ++ .+..||..+.+-... ....
T Consensus 26 ~~~yd~~~~~W~~~~~~~~-----~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 99 (318)
T 2woz_A 26 AVAYDPMENECYLTALAEQ-----I-PRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSA 99 (318)
T ss_dssp EEEEETTTTEEEEEEECTT-----S-CSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSC
T ss_pred eEEECCCCCceecccCCcc-----C-CccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcc
Confidence 7888888776543111100 1 11122233456777777773 12 177888876653321 1111
Q ss_pred ccceeEEEecCCCCeEEEeeCC-------CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCC----
Q 019482 154 HKSVLDMDFSLDSEFLATTSTD-------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD---- 222 (340)
Q Consensus 154 ~~~i~~~~~~~~~~~l~~~~~d-------~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---- 222 (340)
......+.+ +++.++.|+.+ ..+.+||+.+.+-.. +...........+...+++. .+.++.
T Consensus 100 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~~~~i-----yv~GG~~~~~ 171 (318)
T 2woz_A 100 RCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSE-VKNLPIKVYGHNVISHNGMI-----YCLGGKTDDK 171 (318)
T ss_dssp BCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEE-ECCCSSCEESCEEEEETTEE-----EEECCEESSS
T ss_pred ccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeE-CCCCCCcccccEEEEECCEE-----EEEcCCCCCC
Confidence 111122222 56777777753 357888887654322 21111111111112234432 233332
Q ss_pred --cceEEEEECCCCc--EEeeeeccCCCeeEEEECCCCCEEEEeeCC-----CcEEEEeccCceEeecccccccccceee
Q 019482 223 --KALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEINHWSKRLHLGTSIAL 293 (340)
Q Consensus 223 --d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~i~~ 293 (340)
-..+.+||+.+.+ .+............+. -+++.++.|+.+ ..+.+||+.+.+-........ ...-.+
T Consensus 172 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~ 248 (318)
T 2woz_A 172 KCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ-ERSSIS 248 (318)
T ss_dssp CBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSS-CCBSCE
T ss_pred CccceEEEEcCCCCEEEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCC-cccceE
Confidence 2458899988754 2221211111112222 256777777653 357789988765433221111 111112
Q ss_pred EEEecCCeEEEEEecC
Q 019482 294 VEFCPTQRVVLTASKE 309 (340)
Q Consensus 294 ~~~~~~~~~l~~~~~d 309 (340)
+ ...++++++.|+.+
T Consensus 249 ~-~~~~~~i~v~GG~~ 263 (318)
T 2woz_A 249 L-VSLAGSLYAIGGFA 263 (318)
T ss_dssp E-EEETTEEEEECCBC
T ss_pred E-EEECCEEEEECCee
Confidence 2 23467888888765
No 345
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.44 E-value=0.083 Score=45.86 Aligned_cols=114 Identities=12% Similarity=0.017 Sum_probs=72.5
Q ss_pred cceeEEEecCCCCeEEEee-CCCeEEEEEccCC------ee-------EEEeecCCCCceeeEEEccCCCcceEEEEEec
Q 019482 155 KSVLDMDFSLDSEFLATTS-TDGSARIWKTEDG------VA-------WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR 220 (340)
Q Consensus 155 ~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~------~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 220 (340)
.....+..+|||++++.++ -+.++.++|++.- +. ..+.. ..-.....+|.++|.. ..+-
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--~GlGPlHt~Fd~~G~a-----YTtl 395 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--LGLGPLHTTFDGRGNA-----YTTL 395 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--CCSCEEEEEECSSSEE-----EEEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--CCCcccEEEECCCCce-----Eeee
Confidence 4556789999999987766 5789999998741 11 22222 2334778999999942 3444
Q ss_pred CCcceEEEEECCCC----------cEEeeeeccCCCeeEEE------ECCCCCEEEEee---CCCc----------EEEE
Q 019482 221 GDKALLAVYDISTW----------NKIGHKRLLRKPASVLS------ISLDGKYLAMGS---KDGD----------ICVV 271 (340)
Q Consensus 221 ~~d~~i~i~d~~~~----------~~~~~~~~~~~~i~~~~------~s~~~~~l~~~~---~dg~----------i~i~ 271 (340)
--|.+|.-|++... ..+..+..|-. +-.+. -.|+|++|++.. .|+. -.++
T Consensus 396 fidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~Qli 474 (638)
T 3sbq_A 396 FIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLI 474 (638)
T ss_dssp TTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEE
T ss_pred eecceEEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeE
Confidence 57899999998653 23334444432 22232 257899999874 3443 3677
Q ss_pred eccCc
Q 019482 272 DVKKM 276 (340)
Q Consensus 272 d~~~~ 276 (340)
|+...
T Consensus 475 dIsGd 479 (638)
T 3sbq_A 475 DISGD 479 (638)
T ss_dssp ECSSS
T ss_pred ecCCC
Confidence 77543
No 346
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.32 E-value=0.4 Score=40.41 Aligned_cols=227 Identities=12% Similarity=0.062 Sum_probs=133.0
Q ss_pred CCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCC
Q 019482 34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAG 113 (340)
Q Consensus 34 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 113 (340)
...+.+++++.+. ....+.+ ..+|.--.|-. .+.|+..+... |+-|+++......+....+. .+ ...
T Consensus 85 g~~lQiFnle~K~------klks~~~---~e~VvfWkWis-~~~l~lVT~ta-VyHWsi~~~s~P~kvFdR~~-~L-~~~ 151 (494)
T 1bpo_A 85 GKTLQIFNIEMKS------KMKAHTM---TDDVTFWKWIS-LNTVALVTDNA-VYHWSMEGESQPVKMFDRHS-SL-AGC 151 (494)
T ss_dssp TTEEEEEETTTTE------EEEEEEC---SSCCCEEEEEE-TTEEEEECSSE-EEEEESSSSCCCEEEEECCG-GG-TTC
T ss_pred CCeEEEEchHHhh------hhcceec---CCCceEEEecC-CCeEEEEcCCe-eEEecccCCCCchhheecch-hc-ccc
Confidence 3458888887321 1111211 34677777753 34566655544 99999976544433332211 11 235
Q ss_pred CeEEEEEecCCCeEEEcc-------CCCcEEEEeCCCCceeeccccCccceeEEEecCC---CCeEEEeeCC---CeEEE
Q 019482 114 PQKCLSFSVDGSRFAAGG-------VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD---SEFLATTSTD---GSARI 180 (340)
Q Consensus 114 ~v~~~~~~~~~~~l~~~~-------~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d---~~v~i 180 (340)
.|..-..+++.++++..+ -.|.+.+|..+.+. .+.+.+|......+....+ .+.++.+... +.++|
T Consensus 152 QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi 230 (494)
T 1bpo_A 152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 230 (494)
T ss_dssp EEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEE
T ss_pred eEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEE
Confidence 677777788888876543 24788999987543 3345555444433333211 1234444432 68888
Q ss_pred EEccCC---e-----eEEEeec---CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeE
Q 019482 181 WKTEDG---V-----AWTFLTR---NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASV 249 (340)
Q Consensus 181 wd~~~~---~-----~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~ 249 (340)
-++... . ....+.. ....-.-++..++.... +..-+.-|.|.+||+.++.++..-+....+|..
T Consensus 231 ~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygv-----iyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~ 305 (494)
T 1bpo_A 231 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV-----VFLITKYGYIHLYDLETGTCIYMNRISGETIFV 305 (494)
T ss_dssp EECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTE-----EEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred EEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCE-----EEEEecCceEEEEecccceeeeeecccCCceEE
Confidence 888532 1 1111111 11223445666666554 344467789999999999999888877777776
Q ss_pred EEECCCCCEEEEeeCCCcEEEEeccCceEe
Q 019482 250 LSISLDGKYLAMGSKDGDICVVDVKKMEIN 279 (340)
Q Consensus 250 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~ 279 (340)
.+-+....=++.....|.|.-..+.....+
T Consensus 306 t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 306 TAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp EEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred ecccCCCCcEEEEccCceEEEEEEccccch
Confidence 666665555666668888877776665443
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.08 E-value=0.82 Score=41.67 Aligned_cols=108 Identities=11% Similarity=0.059 Sum_probs=62.3
Q ss_pred CCCeEEEEecC------CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC--cEEEEeCCCCc
Q 019482 74 SGDDFVCSTTN------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG--HLRIMHWPSLR 145 (340)
Q Consensus 74 ~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~ 145 (340)
++..++.|+.+ ..+.+||..+......- .......-.+++...+++.++.|+.++ .+.+||..+..
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~------~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~ 524 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIK------SLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI 524 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECC------CCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECC------CCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc
Confidence 67777777754 35788888776543221 111111112333324778888887654 68999988765
Q ss_pred eeecc-----ccCccceeEEEecCC-CCeEEEeeC--C-----CeEEEEEccCCe
Q 019482 146 IILDE-----PKAHKSVLDMDFSLD-SEFLATTST--D-----GSARIWKTEDGV 187 (340)
Q Consensus 146 ~~~~~-----~~~~~~i~~~~~~~~-~~~l~~~~~--d-----~~v~iwd~~~~~ 187 (340)
-.... .........+.+..+ ++.++.|+. + ..+.+||+.+.+
T Consensus 525 W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 525 FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 43221 111122233555654 667777765 2 468899998776
No 348
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.59 E-value=1.1 Score=39.23 Aligned_cols=241 Identities=12% Similarity=0.090 Sum_probs=131.5
Q ss_pred eEEEEecCCCEEEEEecCceeeeeeccccCCCCC------------------CCCCe--EEEEEec---CCCeEEEcc-C
Q 019482 77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ------------------DAGPQ--KCLSFSV---DGSRFAAGG-V 132 (340)
Q Consensus 77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~------------------~~~~v--~~~~~~~---~~~~l~~~~-~ 132 (340)
-|.+|+..|.++|+-+-+.+....+..-...+.. ..+-. ..+++.. ||++|+.-. .
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 3568888999999999888765443211100000 01111 1233332 677777765 3
Q ss_pred CCcEEEEeCCCCceeecccc-CccceeEEEec--CCCCeEEEeeC-------CCeE---------EE---EEccCCeeEE
Q 019482 133 DGHLRIMHWPSLRIILDEPK-AHKSVLDMDFS--LDSEFLATTST-------DGSA---------RI---WKTEDGVAWT 190 (340)
Q Consensus 133 dg~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~--~~~~~l~~~~~-------d~~v---------~i---wd~~~~~~~~ 190 (340)
+..|...+++..++-..+.- ....+..+.|. |+..+++.++. ||.. .+ .|..+.+...
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~ 231 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF 231 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence 56677788887765443322 23467778875 67777777653 2221 11 2223333322
Q ss_pred EeecCCCCceeeEEEccCCCcceEEEE----------EecCCcc-------------------------eEEEEECCC--
Q 019482 191 FLTRNSDEKIELCRFSKDGTKPFLFCT----------VQRGDKA-------------------------LLAVYDIST-- 233 (340)
Q Consensus 191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~----------~~~~~d~-------------------------~i~i~d~~~-- 233 (340)
++.- .+....+...+++++.+..+. .+.++.. .+.+.|.+.
T Consensus 232 Qv~v--~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~ 309 (638)
T 3sbq_A 232 QVIV--DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKD 309 (638)
T ss_dssp EEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBT
T ss_pred EEEc--CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccc
Confidence 2221 122334455666665322110 0011111 244555544
Q ss_pred --CcEEeeeeccCCCeeEEEECCCCCEEEEeeC-CCcEEEEeccCceE-----e-e---c-ccccccccceeeEEEecCC
Q 019482 234 --WNKIGHKRLLRKPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEI-----N-H---W-SKRLHLGTSIALVEFCPTQ 300 (340)
Q Consensus 234 --~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~-----~-~---~-~~~~~~~~~i~~~~~~~~~ 300 (340)
+..+..+..-......+..+|||+++++++. +.++.++|++.... + . . ......+-.....+|.++|
T Consensus 310 ~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G 389 (638)
T 3sbq_A 310 GKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG 389 (638)
T ss_dssp TBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS
T ss_pred ccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC
Confidence 2222222222334567899999999988764 78899999985221 0 0 0 0011124467788999999
Q ss_pred eEEEEEecCCcEEEEEecC
Q 019482 301 RVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 301 ~~l~~~~~dg~i~iw~~~~ 319 (340)
....+.--|..|.-|++..
T Consensus 390 ~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 390 NAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp EEEEEETTTTEEEEEEHHH
T ss_pred ceEeeeeecceEEEEeccH
Confidence 7777777899999999975
No 349
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=93.52 E-value=4.3 Score=36.99 Aligned_cols=200 Identities=11% Similarity=0.043 Sum_probs=103.3
Q ss_pred EEEE-EecCCCeEEEcc-----CCCcEEEEeCCCCceeeccccCc--c------ceeEEEecCCCCeEEEee--------
Q 019482 116 KCLS-FSVDGSRFAAGG-----VDGHLRIMHWPSLRIILDEPKAH--K------SVLDMDFSLDSEFLATTS-------- 173 (340)
Q Consensus 116 ~~~~-~~~~~~~l~~~~-----~dg~i~~~d~~~~~~~~~~~~~~--~------~i~~~~~~~~~~~l~~~~-------- 173 (340)
..+. ++|++++++.+- .-..++++|+.+++.+..-.... . ....++|..+...+++..
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~ 211 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITS 211 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCT
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCc
Confidence 3444 788888766542 22469999999988664322211 1 123447764444444321
Q ss_pred --CCCeEEEEEccCCe--eEEEeecCCCCceeeEEEccCCCcc--eEEEEEe-cCCcceEEEEECCCCc-EEeeeeccCC
Q 019482 174 --TDGSARIWKTEDGV--AWTFLTRNSDEKIELCRFSKDGTKP--FLFCTVQ-RGDKALLAVYDISTWN-KIGHKRLLRK 245 (340)
Q Consensus 174 --~d~~v~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~-~~~d~~i~i~d~~~~~-~~~~~~~~~~ 245 (340)
....|+.|.+-+.. -...+.......-.....++++.+. +++.... ......+.+.|..... ....+.....
T Consensus 212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 291 (711)
T 4hvt_A 212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSD 291 (711)
T ss_dssp TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTT
T ss_pred CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCc
Confidence 12468888775542 2223332222223345567777753 1211112 3344677777765421 2222222221
Q ss_pred CeeEEEECCCCCEEEEee----------CCCcEEEEeccCceE-------eecccccccccceeeEEEecCCeEEEEEec
Q 019482 246 PASVLSISLDGKYLAMGS----------KDGDICVVDVKKMEI-------NHWSKRLHLGTSIALVEFCPTQRVVLTASK 308 (340)
Q Consensus 246 ~i~~~~~s~~~~~l~~~~----------~dg~i~i~d~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 308 (340)
..+..++++.+++... ..+.|...|+.+... ...+........+.++.|..+ .++++...
T Consensus 292 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~ 368 (711)
T 4hvt_A 292 --ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYD 368 (711)
T ss_dssp --CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEE
T ss_pred --ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEE
Confidence 1233445665555331 367799999876421 111111222457888999876 67777778
Q ss_pred CCcEEEEEec
Q 019482 309 EWGAMITKLT 318 (340)
Q Consensus 309 dg~i~iw~~~ 318 (340)
++.-+++-++
T Consensus 369 ~~~~~l~~~~ 378 (711)
T 4hvt_A 369 NVVAKVVTFT 378 (711)
T ss_dssp TTEEEEEEEC
T ss_pred CCEEEEEEEE
Confidence 8765554443
No 350
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.27 E-value=1.9 Score=42.31 Aligned_cols=161 Identities=11% Similarity=0.090 Sum_probs=91.6
Q ss_pred EEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEc--CC-CCeEEEEec---CCCEEEEEecC
Q 019482 21 LVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVN--PS-GDDFVCSTT---NGGCKLFEVYG 94 (340)
Q Consensus 21 ~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~-~~~l~~~~~---d~~i~iw~~~~ 94 (340)
++++|-....+...|.+.+|+.+.... ..++||-..-..+... +. ...++.+.. .+.++|-++..
T Consensus 165 ~~l~gi~~~~~~v~G~mQLyS~er~~s---------Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~ 235 (1630)
T 1xi4_A 165 LLLTGISAQQNRVVGAMQLYSVDRKVS---------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT 235 (1630)
T ss_pred EEEEeeccCCCcccceeeeeecccccc---------hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCC
Confidence 344444434445778899999874332 3355565444333332 11 123333322 25788888854
Q ss_pred c-eeeeeeccc----cCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeE
Q 019482 95 G-ATDINLLAK----KMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFL 169 (340)
Q Consensus 95 ~-~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 169 (340)
. .....+..+ ..++....+-..++..++.-..+...+.-|.|.+||++++.++..-+-....|...+-+....-+
T Consensus 236 ~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~ 315 (1630)
T 1xi4_A 236 PPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGI 315 (1630)
T ss_pred CccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCce
Confidence 3 111111100 11111123445677888877788888899999999999999887665555566665555444445
Q ss_pred EEeeCCCeEEEEEccCCeeEE
Q 019482 170 ATTSTDGSARIWKTEDGVAWT 190 (340)
Q Consensus 170 ~~~~~d~~v~iwd~~~~~~~~ 190 (340)
+.....|.|.--.+.....+.
T Consensus 316 ~~vnr~G~vl~v~v~~~~iv~ 336 (1630)
T 1xi4_A 316 IGVNRKGQVLSVCVEEENIIP 336 (1630)
T ss_pred EEEcCCceEEEEEEccchhhh
Confidence 555677777776666554443
No 351
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=93.17 E-value=2.6 Score=33.39 Aligned_cols=223 Identities=9% Similarity=-0.030 Sum_probs=112.1
Q ss_pred CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC
Q 019482 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL 144 (340)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 144 (340)
.|..++.... ..++. . ||.|+.|-......... +......|..++...+. .++. . ||.|+.|-....
T Consensus 25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~-------p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~ 91 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTM-------PAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNED 91 (282)
T ss_dssp SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSC-------CGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTT
T ss_pred CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCC-------CccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCC
Confidence 5777776432 22333 4 88888887654322111 01122356666665433 3333 4 899999975532
Q ss_pred ceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc
Q 019482 145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA 224 (340)
Q Consensus 145 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~ 224 (340)
..+-.-......|..++...+. .+.-. ||.|+.|-......+. +.......|..++...... ++. . |+
T Consensus 92 Gqlg~P~~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~~~------~~l-~-~G 159 (282)
T 3qhy_B 92 GQTTVPAEARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGVYTA------LAV-K-NG 159 (282)
T ss_dssp STTCCCGGGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSEE------EEE-E-TT
T ss_pred CCCCCCcccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcccCEE------EEE-E-CC
Confidence 2211111112367777766433 33334 8999999765422211 1111223465665543322 222 2 68
Q ss_pred eEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEE
Q 019482 225 LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL 304 (340)
Q Consensus 225 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 304 (340)
.+..|-......+.........|..++...+. .++. .||.|+.|-......+-.... . ...|..++-..+...++
T Consensus 160 ~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~~-~-~~~v~~i~~G~~h~~al 234 (282)
T 3qhy_B 160 GVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPTE-A-LSGVSAIASGEWYSLAL 234 (282)
T ss_dssp EEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCGG-G-GSSCCEEEECSSCEEEE
T ss_pred EEEEecCCCCCCCCCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCcc-c-CCCceEEEcCCCEEEEE
Confidence 89988766432222111223456666654432 2333 589999996544222111111 1 23577776654433333
Q ss_pred EEecCCcEEEEEecCC
Q 019482 305 TASKEWGAMITKLTVP 320 (340)
Q Consensus 305 ~~~~dg~i~iw~~~~~ 320 (340)
+ ||.++.|=....
T Consensus 235 ~---~g~v~~wG~n~~ 247 (282)
T 3qhy_B 235 K---NGKVIAWGSSRT 247 (282)
T ss_dssp E---TTEEEEESTTCC
T ss_pred E---CCEEEEecCCCC
Confidence 3 888888866543
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.86 E-value=4.1 Score=34.92 Aligned_cols=19 Identities=11% Similarity=-0.062 Sum_probs=15.6
Q ss_pred CCeeEEEECCCCCEEEEee
Q 019482 245 KPASVLSISLDGKYLAMGS 263 (340)
Q Consensus 245 ~~i~~~~~s~~~~~l~~~~ 263 (340)
..+..+...|||.++++..
T Consensus 336 ~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 336 GHILGFGEDELGEVYILSS 354 (463)
T ss_dssp SEEEEEEECTTCCEEEEEE
T ss_pred CcceEEEECCCCCEEEEec
Confidence 4688999999998877765
No 353
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=89.44 E-value=15 Score=34.92 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=33.0
Q ss_pred ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee
Q 019482 156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT 193 (340)
Q Consensus 156 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~ 193 (340)
.+.++...++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46677778888899999999999999999999988764
No 354
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=89.38 E-value=8.4 Score=32.02 Aligned_cols=145 Identities=12% Similarity=0.075 Sum_probs=67.2
Q ss_pred CCCeeEEEEcC-CCCeEEEEecCC--CEEEEEecCceeeeeecccc--CCCCC------CCCCeEEEEEec-C-CCeEEE
Q 019482 63 EGDPMTIAVNP-SGDDFVCSTTNG--GCKLFEVYGGATDINLLAKK--MPPLQ------DAGPQKCLSFSV-D-GSRFAA 129 (340)
Q Consensus 63 ~~~v~~~~~~~-~~~~l~~~~~d~--~i~iw~~~~~~~~~~~~~~~--~~~~~------~~~~v~~~~~~~-~-~~~l~~ 129 (340)
...|.+|++.| +...|.++...+ .-.||....+.......... ..... ....|.++++.| + ...+.+
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 34699999998 333444444443 11344443322211111111 00000 113577899987 2 456666
Q ss_pred ccCCCcEEEEeCCCCc---eeeccc----------------cCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeE
Q 019482 130 GGVDGHLRIMHWPSLR---IILDEP----------------KAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAW 189 (340)
Q Consensus 130 ~~~dg~i~~~d~~~~~---~~~~~~----------------~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~ 189 (340)
+...+.|...+ ..++ .+.... .....+.+|.++| +...+..+..++.|...+ ..++..
T Consensus 134 g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW 211 (394)
T 3b7f_A 134 GTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDW 211 (394)
T ss_dssp EEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSC
T ss_pred EecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCc
Confidence 65566555443 2222 221110 0123578899988 344555554445444332 223332
Q ss_pred EEeecCC------------CCceeeEEEccCC
Q 019482 190 TFLTRNS------------DEKIELCRFSKDG 209 (340)
Q Consensus 190 ~~~~~~~------------~~~v~~~~~~~~~ 209 (340)
..+.... ...+.++.+.|..
T Consensus 212 ~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~ 243 (394)
T 3b7f_A 212 KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAA 243 (394)
T ss_dssp EECCTTCCCTTSSSSSSSSCBCEEEEEECSSS
T ss_pred eECCCCccccccCCCccccCcceeEEEECCCC
Confidence 2222100 1247888998864
No 355
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=87.52 E-value=11 Score=31.28 Aligned_cols=185 Identities=9% Similarity=-0.004 Sum_probs=91.0
Q ss_pred CCeEEEccCCCcEEEEeCCCCc-----------eeeccccC-ccceeEEEecCCCCeEEEeeCCCeEEEEEccCC-----
Q 019482 124 GSRFAAGGVDGHLRIMHWPSLR-----------IILDEPKA-HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG----- 186 (340)
Q Consensus 124 ~~~l~~~~~dg~i~~~d~~~~~-----------~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~----- 186 (340)
....+.-..||.|..|-..... ....+... ...+..++++......+.-..||.|+.|-....
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~ 141 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH 141 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence 3344555678888888543211 11111111 123445666665666666678999999965321
Q ss_pred ------eeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC-c--------E--Eeeee-ccCCCee
Q 019482 187 ------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-N--------K--IGHKR-LLRKPAS 248 (340)
Q Consensus 187 ------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~--------~--~~~~~-~~~~~i~ 248 (340)
.....+.......|..++.... + .+.-..++.|..|-.... + . ..... .....+.
T Consensus 142 g~~~~~~~p~~v~~l~~~~i~~va~G~~--h-----s~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~ 214 (389)
T 3kci_A 142 GNRSPCDRPRVIESLRGIEVVDVAAGGA--H-----SACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVV 214 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEECSS--E-----EEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEE
T ss_pred CCCccCcCCeEecccCCCeEEEEEeCcC--e-----EEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEE
Confidence 0111111111223555544332 2 233345788888875421 0 0 11111 1123466
Q ss_pred EEEECCCCCEEEEeeCCCcEEEEeccCc-----------eEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482 249 VLSISLDGKYLAMGSKDGDICVVDVKKM-----------EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL 317 (340)
Q Consensus 249 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~-----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~ 317 (340)
.++......+.++...||.|+.|-.... .....+.... ...|..++... ...+.-..||.++.|=.
T Consensus 215 ~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~-~~~v~~v~~G~--~hs~alt~~G~v~~wG~ 291 (389)
T 3kci_A 215 DIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLT-GLGVVKVECGS--QFSVALTKSGAVYTWGK 291 (389)
T ss_dssp EEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGT-TSCEEEEEEET--TEEEEEETTSCEEEEEC
T ss_pred EEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccC-CCcEEEEeCCC--CEEEEEeCCCeEEEEeC
Confidence 6665443356666678999999954321 1111111111 22455555543 33444467888888865
Q ss_pred c
Q 019482 318 T 318 (340)
Q Consensus 318 ~ 318 (340)
.
T Consensus 292 n 292 (389)
T 3kci_A 292 G 292 (389)
T ss_dssp C
T ss_pred C
Confidence 4
No 356
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=87.29 E-value=9.4 Score=30.12 Aligned_cols=185 Identities=11% Similarity=0.020 Sum_probs=94.8
Q ss_pred CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC
Q 019482 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL 144 (340)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 144 (340)
.|..++.... ..++. . ||.|..|-......... +..-...|..++...+. .+.-. ||.|+.|-....
T Consensus 64 ~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg~-------P~~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~ 130 (282)
T 3qhy_B 64 GVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTTV-------PAEARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSD 130 (282)
T ss_dssp CCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCC-------CGGGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTT
T ss_pred CEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCCC-------CcccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCC
Confidence 5777776533 23333 4 88888887654322111 11122467777765443 33334 899999976543
Q ss_pred ceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc
Q 019482 145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA 224 (340)
Q Consensus 145 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~ 224 (340)
..+.........|..++...+.. ++ -. ||.|+.|-......+. ........|..++...... ++. .++
T Consensus 131 gqlg~~~~~~~~i~~i~~G~~~~-~~-l~-~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~hs------~al--~~G 198 (282)
T 3qhy_B 131 GQTTVPAEAQSGVTALDGGVYTA-LA-VK-NGGVIAWGDNYFGQTT-VPAEAQSGVDDVAGGIFHS------LAL--KDG 198 (282)
T ss_dssp STTSCCGGGGSSEEEEEECSSEE-EE-EE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSEE------EEE--ETT
T ss_pred CcCCCCccCCCCeEEEEcccCEE-EE-EE-CCEEEEecCCCCCCCC-CceecCCCeEEEEecCCEE------EEE--ECC
Confidence 22211111223576666553332 22 23 7999999765422211 1111123466665544332 233 488
Q ss_pred eEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce
Q 019482 225 LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME 277 (340)
Q Consensus 225 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 277 (340)
.+..|-......+..-......|..++..... .++. . ||.|+.|-.....
T Consensus 199 ~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al-~-~g~v~~wG~n~~g 248 (282)
T 3qhy_B 199 KVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLAL-K-NGKVIAWGSSRTA 248 (282)
T ss_dssp EEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEE-E-TTEEEEESTTCCC
T ss_pred eEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEE-E-CCEEEEecCCCCc
Confidence 99999765432221111122356666654433 3333 3 8999999765543
No 357
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.23 E-value=23 Score=34.47 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=32.0
Q ss_pred ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee
Q 019482 156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT 193 (340)
Q Consensus 156 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~ 193 (340)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34556667788899999999999999999999988764
No 358
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=86.84 E-value=11 Score=30.34 Aligned_cols=196 Identities=14% Similarity=0.061 Sum_probs=106.0
Q ss_pred CCCCeEEEEecCCCEEEEEecCceeeeee-ccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC---CC----
Q 019482 73 PSGDDFVCSTTNGGCKLFEVYGGATDINL-LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP---SL---- 144 (340)
Q Consensus 73 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~---~~---- 144 (340)
|+..++++.+.+|.|+--.+..-+....- .......+.....+..+........++..+..|.++-+... ..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 45667888999999988776543321110 00001112234556665555556677777888987666542 21
Q ss_pred --ceeeccc--cCccceeEEEecC---CCCeEEEeeCCCeEEEEEccC-------CeeEEEeecCCCCceeeEEEccCCC
Q 019482 145 --RIILDEP--KAHKSVLDMDFSL---DSEFLATTSTDGSARIWKTED-------GVAWTFLTRNSDEKIELCRFSKDGT 210 (340)
Q Consensus 145 --~~~~~~~--~~~~~i~~~~~~~---~~~~l~~~~~d~~v~iwd~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (340)
..+.... ...+.|..+...+ +..+++..+..|.++.-.+.. |.....+. ....+-.+....+..
T Consensus 86 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~--~~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 86 KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLN--DKDFVTSAEIVFKDE 163 (312)
T ss_dssp --CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCC--TTCCEEEEEEECTTC
T ss_pred CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecC--CCCEEEEEEEeCCCC
Confidence 1111111 1223454443332 456788888999999888753 22222222 233455554444334
Q ss_pred cceEEEEEecCCcceEEEEECCCCcE-------Eeeeec-cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC
Q 019482 211 KPFLFCTVQRGDKALLAVYDISTWNK-------IGHKRL-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (340)
Q Consensus 211 ~~~~~~~~~~~~d~~i~i~d~~~~~~-------~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 275 (340)
. ++..+.+|.+..+....-.. +..+.. ....+..+..-.++..+++.+..|..+..++..
T Consensus 164 ~-----i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 164 K-----VICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp E-----EEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred E-----EEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 3 45556677777777643111 111111 134556665555667788889999999988754
No 359
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=84.87 E-value=3 Score=36.91 Aligned_cols=59 Identities=17% Similarity=0.316 Sum_probs=41.9
Q ss_pred eeEEEECCCCCEEEEeeCC------------CcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEE
Q 019482 247 ASVLSISLDGKYLAMGSKD------------GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA 306 (340)
Q Consensus 247 i~~~~~s~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 306 (340)
.-.|+|+|.|++++.-..+ +.+.+.+..+++..+.+. ...+..++.++|+||++.|+..
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~-~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV-GPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEE-CCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEe-CCCCccCcCeeECCCCCEEEEE
Confidence 3568999999876654322 345666777777665553 4447899999999999877665
No 360
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=84.53 E-value=15 Score=29.80 Aligned_cols=119 Identities=13% Similarity=0.102 Sum_probs=72.0
Q ss_pred CCeeEE-EEcC--CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEe
Q 019482 64 GDPMTI-AVNP--SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH 140 (340)
Q Consensus 64 ~~v~~~-~~~~--~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d 140 (340)
..|.++ .... +..+++..+.+|.++--.+........ .......+...+.+..+........|+..+..|.+..+.
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r-~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~ 173 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRS-GGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFS 173 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCS-SCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcccc-CceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence 445554 3432 577999999999999888765432211 111111122345666666555566788888899888777
Q ss_pred CC--CCc---------eeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEcc
Q 019482 141 WP--SLR---------IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184 (340)
Q Consensus 141 ~~--~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~ 184 (340)
.. .-. ....+ ...+.|.++...+++..++..+..|.++.-.+.
T Consensus 174 ~~~~eip~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~ 227 (327)
T 3uc1_A 174 ATDEALRPMGRATSGVQGMRF-NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIE 227 (327)
T ss_dssp CCTTTSCCCCTTSBCEESSCC-CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred CcccccCcCCcCCCCeeeecC-CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHH
Confidence 65 211 11112 223456666665566678888889998888764
No 361
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=84.50 E-value=16 Score=30.28 Aligned_cols=169 Identities=5% Similarity=-0.053 Sum_probs=86.8
Q ss_pred cEEEEeCCCC--ceeeccccC------ccceeEEEec---CC----CCeEEEee-CCCeEEEEEccCCeeEEEeec----
Q 019482 135 HLRIMHWPSL--RIILDEPKA------HKSVLDMDFS---LD----SEFLATTS-TDGSARIWKTEDGVAWTFLTR---- 194 (340)
Q Consensus 135 ~i~~~d~~~~--~~~~~~~~~------~~~i~~~~~~---~~----~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~---- 194 (340)
+|.+||+.+. +.+.++.-. ...+..+.+. |+ +.++..+. ....|.++|+.+++..+.+..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778888887 665543321 2357777777 22 23333333 467899999998877655421
Q ss_pred CC-------------CCceeeEEEccC----CCcceEEEEEecCCcceEEEEE---CCCC---cEEeeeecc--CCCeeE
Q 019482 195 NS-------------DEKIELCRFSKD----GTKPFLFCTVQRGDKALLAVYD---ISTW---NKIGHKRLL--RKPASV 249 (340)
Q Consensus 195 ~~-------------~~~v~~~~~~~~----~~~~~~~~~~~~~~d~~i~i~d---~~~~---~~~~~~~~~--~~~i~~ 249 (340)
.. ...+..++++|+ ++.+++. -++ + ..+.--. ++.. ..+..+-.. ...-..
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~-pls-s--~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~ 279 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYL-AGS-A--IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIA 279 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEE-ESS-C--SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEE-ECC-C--CcEEEEEHHHhhCcchhhceEEeeecCCCCCcce
Confidence 00 124667788877 4443321 111 1 1111111 1111 111111111 123345
Q ss_pred EEEC-CCCCEEEEeeCCCcEEEEeccC-c---eEeecccccccccceeeEEEecCCeEEEEEe
Q 019482 250 LSIS-LDGKYLAMGSKDGDICVVDVKK-M---EINHWSKRLHLGTSIALVEFCPTQRVVLTAS 307 (340)
Q Consensus 250 ~~~s-~~~~~l~~~~~dg~i~i~d~~~-~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 307 (340)
+++. .+|.++++--..+.|..|+..+ . +....+.....-.....+++.++|.+.+..+
T Consensus 280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 280 LAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp EEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred EEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 6675 5777777777788999999875 1 1111111111123466777766766555543
No 362
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=82.99 E-value=15 Score=28.83 Aligned_cols=196 Identities=10% Similarity=-0.018 Sum_probs=102.7
Q ss_pred CCeEEEEEecCCCeEEEccCCCcEEEE---eCCCCceeeccccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCe-
Q 019482 113 GPQKCLSFSVDGSRFAAGGVDGHLRIM---HWPSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGV- 187 (340)
Q Consensus 113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~---d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~- 187 (340)
+.+..+.-.....+|+.-+.+|.++-. +++...... +....+.|..+.... +..+++..+.+|.++-..+..-.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 344444444444455555667765543 333221111 122344566554421 46789999999999999876432
Q ss_pred ---eEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC---------CcEEeeeeccCCCeeEEEECCC
Q 019482 188 ---AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST---------WNKIGHKRLLRKPASVLSISLD 255 (340)
Q Consensus 188 ---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~---------~~~~~~~~~~~~~i~~~~~s~~ 255 (340)
-+..+....+..+..+........ ++..+..|.+..++... |...-.+. .+..+..+...++
T Consensus 103 ~~~G~~~i~lkegD~l~~~~~~~~~~~-----ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~ 176 (276)
T 3no0_A 103 KAQGMPIIKLTEGDEVVSIASSVDETH-----ILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNG 176 (276)
T ss_dssp CSTTEECSCCCTTCCEEEEEECCSSCE-----EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESS
T ss_pred hcCCeEEEecCCCCEEEEEEEeCCCCE-----EEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCC
Confidence 111111112234444444444433 34445567666665432 11111111 1245655555556
Q ss_pred CCEEEEeeCCCcEEEEeccCceE-------eecccccccccceeeEEEecCCeEEEEEecCCcEEE--EEec
Q 019482 256 GKYLAMGSKDGDICVVDVKKMEI-------NHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI--TKLT 318 (340)
Q Consensus 256 ~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i--w~~~ 318 (340)
+.+++..+..|.++...+..... ...+. . +..+..+....+...++..+.+|.+.. ++..
T Consensus 177 ~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~--~-~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 177 EPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSG--T-KDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp CSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCC--S-SSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred CCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEc--C-CCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 67888999999999888754222 12221 1 344555544444456777777888776 6654
No 363
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=81.87 E-value=6.8 Score=34.43 Aligned_cols=61 Identities=15% Similarity=0.285 Sum_probs=42.4
Q ss_pred CeeEEEECCCCCEEEEeeC------------CCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEe
Q 019482 246 PASVLSISLDGKYLAMGSK------------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS 307 (340)
Q Consensus 246 ~i~~~~~s~~~~~l~~~~~------------dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 307 (340)
....|.|+++|.+.+.... .+.+..++..+++....+. ......++.++|+||++.|+.+-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~-~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV-GPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEE-CCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEe-CCCCccccCCEECCCCCEEEEEE
Confidence 4567999999987774321 2257777777777665542 22245789999999998877664
No 364
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=81.22 E-value=32 Score=31.36 Aligned_cols=238 Identities=8% Similarity=-0.059 Sum_probs=115.6
Q ss_pred eeEEE-EcCCCCeEEEEec-C----CCEEEEEecCceeeeeeccccCCCCCCC-----CCeEEEEEecCCCeEEEc----
Q 019482 66 PMTIA-VNPSGDDFVCSTT-N----GGCKLFEVYGGATDINLLAKKMPPLQDA-----GPQKCLSFSVDGSRFAAG---- 130 (340)
Q Consensus 66 v~~~~-~~~~~~~l~~~~~-d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~---- 130 (340)
...+. ++|++++++.+-. . ..++++|+.+++....-.... ... .....++|..+..++++.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~----~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~ 206 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPI----TNSGKLLEGKFTYPTWINKDTIIFNLVLHK 206 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCB----CTTCCBCCEETCCEEEEETTEEEECCCCST
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccc----cccccccccccceeeEECCCEEEEEeCCCC
Confidence 34455 8999998775422 2 389999999887653221100 000 011334776444344431
Q ss_pred ------cCCCcEEEEeCCCCc--eeeccccCccc-eeEEEecCCCCe-----EEEeeCC---CeEEEEEccC--CeeEEE
Q 019482 131 ------GVDGHLRIMHWPSLR--IILDEPKAHKS-VLDMDFSLDSEF-----LATTSTD---GSARIWKTED--GVAWTF 191 (340)
Q Consensus 131 ------~~dg~i~~~d~~~~~--~~~~~~~~~~~-i~~~~~~~~~~~-----l~~~~~d---~~v~iwd~~~--~~~~~~ 191 (340)
+....|+.|.+-+.. -...+...... -.....++++++ +++.+.+ ..+.+.+... ++ +..
T Consensus 207 ~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~ 285 (711)
T 4hvt_A 207 NEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQK 285 (711)
T ss_dssp TCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEE
T ss_pred CCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceE
Confidence 112468888776542 11222222222 223445666653 4443322 4566666543 33 233
Q ss_pred eecCCCCceeeEEEccCCCcceEEEEEec---------CCcceEEEEECCCCc-------EEee-e-eccCCCeeEEEEC
Q 019482 192 LTRNSDEKIELCRFSKDGTKPFLFCTVQR---------GDKALLAVYDISTWN-------KIGH-K-RLLRKPASVLSIS 253 (340)
Q Consensus 192 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---------~~d~~i~i~d~~~~~-------~~~~-~-~~~~~~i~~~~~s 253 (340)
+...... .+..+.++.. + +.+. ...+.|...|+.++. .... + ......+..+.|.
T Consensus 286 l~~~~~~---~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 358 (711)
T 4hvt_A 286 INMPSDA---TLQGSFKEYV-F---WLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTT 358 (711)
T ss_dssp CCSCTTC---EEEEEETTEE-E---EECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEEC
T ss_pred eecCCcc---eEeeeECCEE-E---EEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEE
Confidence 3222221 2233445542 1 1111 146678899987642 1112 2 2233457788888
Q ss_pred CCCCEEEEeeCCC--cEEEEeccCceE-eec-ccccccccceeeEEEecCCe-EEEEEecC---CcEEEEEe
Q 019482 254 LDGKYLAMGSKDG--DICVVDVKKMEI-NHW-SKRLHLGTSIALVEFCPTQR-VVLTASKE---WGAMITKL 317 (340)
Q Consensus 254 ~~~~~l~~~~~dg--~i~i~d~~~~~~-~~~-~~~~~~~~~i~~~~~~~~~~-~l~~~~~d---g~i~iw~~ 317 (340)
.+ .++++...++ .|.++|+.+++. ... +.... ...+.....++++. ++++.+.. +.+..+++
T Consensus 359 ~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~ 428 (711)
T 4hvt_A 359 KD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVK 428 (711)
T ss_dssp SS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred CC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeC
Confidence 76 5667776776 467788776641 222 21111 13465666666664 44443332 34444443
No 365
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=80.37 E-value=30 Score=30.40 Aligned_cols=187 Identities=12% Similarity=0.099 Sum_probs=93.8
Q ss_pred CEEEEEecCceeeeeec-cccCCCCCCCCCeEEEEEecCCC-eEEEccCCCc----------------------------
Q 019482 86 GCKLFEVYGGATDINLL-AKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGH---------------------------- 135 (340)
Q Consensus 86 ~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~---------------------------- 135 (340)
.|.+|+++. +...++. ......-.|...+....|.-||+ -++....+|+
T Consensus 152 ~l~aY~ldG-~~LW~idlg~ni~aGa~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEy 230 (591)
T 2zux_A 152 LIDAYKLDG-TKLWRINLGKNIRAGAHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEY 230 (591)
T ss_dssp EEEEECTTS-CEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCE
T ss_pred EEEEEECCC-CEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcE
Confidence 466777753 3333332 11222222455677777777775 4555544444
Q ss_pred EEEEeCCCCceeeccccC--ccc---------------eeEEEec-CCCCeEEEee---CCCeEEEEEccCCeeEEEeec
Q 019482 136 LRIMHWPSLRIILDEPKA--HKS---------------VLDMDFS-LDSEFLATTS---TDGSARIWKTEDGVAWTFLTR 194 (340)
Q Consensus 136 i~~~d~~~~~~~~~~~~~--~~~---------------i~~~~~~-~~~~~l~~~~---~d~~v~iwd~~~~~~~~~~~~ 194 (340)
+.++|=.+++.+....-. ... ..++++- -+...++.+- .-..|..||.+.++....+..
T Consensus 231 L~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~ 310 (591)
T 2zux_A 231 LTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTL 310 (591)
T ss_dssp EEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEE
T ss_pred EEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEe
Confidence 778887777766543221 111 1223321 1212233332 123588899988876544432
Q ss_pred CCC------------CceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCC--CCEEE
Q 019482 195 NSD------------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD--GKYLA 260 (340)
Q Consensus 195 ~~~------------~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~ 260 (340)
... ..+.-..+.-||+.-+++....-..||++ +|... ..|...+....|.|+ |..++
T Consensus 311 d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs~~iD~dG~~-L~st~--------~gHGDa~hv~dldP~r~GlEv~ 381 (591)
T 2zux_A 311 DSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSMAVDHDGKG-MYSTG--------LGHGDALHTGDLDPGRPGLEVF 381 (591)
T ss_dssp ETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETTEEECTTSCE-EEECS--------CCCCSCEEEECCCTTSSSCEEE
T ss_pred cCCCCCcccccccCCCCCeeEeCCCCCCceEEEeeeEECCCCCE-eeeCC--------CCCCCeeEEeecCCCCCCcEEE
Confidence 111 23444555566665322211122233333 44432 256666677777776 45666
Q ss_pred EeeCCC----cEEEEeccCceEeecc
Q 019482 261 MGSKDG----DICVVDVKKMEINHWS 282 (340)
Q Consensus 261 ~~~~dg----~i~i~d~~~~~~~~~~ 282 (340)
.+.+++ -..+.|..+++.+...
T Consensus 382 ~~~E~~~~~~G~~~~dA~tG~vlw~~ 407 (591)
T 2zux_A 382 QVHEDKNAKYGLSFRDAATGKILWGV 407 (591)
T ss_dssp EECCCTTSSCSEEEEETTTCCEEEEE
T ss_pred EEecCCCCCCccEEEECCCCcEEEEc
Confidence 665542 3556788888877554
No 366
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=79.84 E-value=17 Score=32.98 Aligned_cols=75 Identities=13% Similarity=0.122 Sum_probs=44.2
Q ss_pred eeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEcc---CCCcc----eEEEEEecCCcceEEEE
Q 019482 157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK---DGTKP----FLFCTVQRGDKALLAVY 229 (340)
Q Consensus 157 i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~----~~~~~~~~~~d~~i~i~ 229 (340)
|.++.+ +..++++-+.|.++|+|++++++++.+...........-...| .++++ .+.+.......|..++|
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~~~~lv~y~P~~~G~Fk~~ 301 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLYNNTLVTLLPLENGLFQMG 301 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEESSSEEEEEETTTTCEEEEE
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhheeeEEEEEecCCCCeEEEE
Confidence 444443 4779999999999999999999988877642110000001222 22211 11223455566788888
Q ss_pred ECCC
Q 019482 230 DIST 233 (340)
Q Consensus 230 d~~~ 233 (340)
.+..
T Consensus 302 ~l~~ 305 (729)
T 3f7f_A 302 TLLV 305 (729)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 8754
No 367
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=78.09 E-value=8.5 Score=34.11 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=41.1
Q ss_pred eeEEEecCCCCeEEEeeCC------------CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcce
Q 019482 157 VLDMDFSLDSEFLATTSTD------------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213 (340)
Q Consensus 157 i~~~~~~~~~~~l~~~~~d------------~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (340)
.-.|+|+|.|++++.-..+ ..+.+.+..+++....+.......++.++|+||++.+|
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlf 546 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLF 546 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEE
Confidence 4568999999866654322 24566666777776666666667899999999998743
No 368
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=76.15 E-value=32 Score=28.49 Aligned_cols=240 Identities=8% Similarity=-0.003 Sum_probs=113.7
Q ss_pred eeEEEEcCCCCeEEEEecCCCEEEEEecCceee------eeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEE
Q 019482 66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD------INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (340)
Q Consensus 66 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 139 (340)
|..++. .....+.-..||.|..|=....... .......... .....+..++.+.-....+.-..||.|+.|
T Consensus 55 i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-~~~~~~~~v~i~~G~~h~~al~~~G~v~~w 131 (389)
T 3kci_A 55 PVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLES-IQHVFIKKVAVNSGGKHCLALSSEGEVYSW 131 (389)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGG-GTTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred eEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEccc-ccCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence 444443 3445556677888888864332110 0000000000 012345556666655666666789999999
Q ss_pred eCCCCc-----------eeeccccCc-cceeEEEecCCCCeEEEeeCCCeEEEEEccC-Ce----------eEEEeecCC
Q 019482 140 HWPSLR-----------IILDEPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKTED-GV----------AWTFLTRNS 196 (340)
Q Consensus 140 d~~~~~-----------~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~-~~----------~~~~~~~~~ 196 (340)
-..... ....+.... ..|..++.. ....+....||.|+.|-... ++ ....+....
T Consensus 132 G~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~ 209 (389)
T 3kci_A 132 GEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ 209 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT
T ss_pred eCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccC
Confidence 543211 111111111 145555544 34445556789999997532 11 111111112
Q ss_pred CCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc-----------EEeeeec-cCCCeeEEEECCCCCEEEEeeC
Q 019482 197 DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-----------KIGHKRL-LRKPASVLSISLDGKYLAMGSK 264 (340)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-----------~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~ 264 (340)
...+..++......+ .+.-..++.|..|-..... ....+.. ....|..++.. ..+.++-..
T Consensus 210 ~~~v~~ia~G~g~~~-----t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~ 282 (389)
T 3kci_A 210 GHRVVDIACGSGDAQ-----TLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTK 282 (389)
T ss_dssp TSCEEEEEECCSSCE-----EEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEET
T ss_pred CCeEEEEEEcCCCcE-----EEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeC
Confidence 234555554432222 3334568889888654211 0111111 11234444432 334555567
Q ss_pred CCcEEEEeccCc-----------eEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482 265 DGDICVVDVKKM-----------EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP 320 (340)
Q Consensus 265 dg~i~i~d~~~~-----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 320 (340)
||.|+.|-.... .....+.... ...|..++.. ....+....||.++.|=....
T Consensus 283 ~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~-~~~v~~ia~G--~~h~~al~~~G~v~~wG~n~~ 346 (389)
T 3kci_A 283 SGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQ-GKKVIAIATG--SLHCVCCTEDGEVYTWGDNDE 346 (389)
T ss_dssp TSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT-TCCEEEEEEC--SSEEEEEETTCCEEEEECCTT
T ss_pred CCeEEEEeCCCCCCCCCCCCccccCCeEeccCC-CCCEEEEEec--cCeEEEECCCCCEEEeeCCCC
Confidence 899999954321 1111111111 2346565543 334455578899999977543
No 369
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=76.08 E-value=32 Score=28.42 Aligned_cols=114 Identities=11% Similarity=0.033 Sum_probs=63.2
Q ss_pred cCCCCeEEEEecCCCEEEEEecCceeeeee-ccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEe---CCC----
Q 019482 72 NPSGDDFVCSTTNGGCKLFEVYGGATDINL-LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH---WPS---- 143 (340)
Q Consensus 72 ~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d---~~~---- 143 (340)
-|+..++++.+.+|.|+--.+........- .......+.....+..+........|+..+..|.++-+. ++.
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~ 83 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSN 83 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcc
Confidence 467788999999998887665432211000 000000112345666666655666677777788765554 332
Q ss_pred --Cceeeccc--cCccceeEEEecC---CCCeEEEeeCCCeEEEEEccC
Q 019482 144 --LRIILDEP--KAHKSVLDMDFSL---DSEFLATTSTDGSARIWKTED 185 (340)
Q Consensus 144 --~~~~~~~~--~~~~~i~~~~~~~---~~~~l~~~~~d~~v~iwd~~~ 185 (340)
|..+..+. .....|.++..-. ++.+|+.++..|.++.-.+..
T Consensus 84 a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e 132 (370)
T 3l6v_A 84 ARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSE 132 (370)
T ss_dssp SCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGG
T ss_pred cCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHH
Confidence 22222221 1233555544332 356899999999999988653
No 370
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=75.22 E-value=34 Score=28.36 Aligned_cols=140 Identities=6% Similarity=-0.050 Sum_probs=79.8
Q ss_pred eEEEEEccCC--eeEEEeecCC-----CCceeeEEEc---cC--CCcceEEEEEecCCcceEEEEECCCCcEEeeeecc-
Q 019482 177 SARIWKTEDG--VAWTFLTRNS-----DEKIELCRFS---KD--GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL- 243 (340)
Q Consensus 177 ~v~iwd~~~~--~~~~~~~~~~-----~~~v~~~~~~---~~--~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~- 243 (340)
+|.+||+.+. +.++.+.... ...+..+.+. |. ...-+ +-++-....-|.++|+.+++.-+.....
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~--aYItD~~~~gLIVydl~~~~swRv~~~~~ 201 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETF--VYITNFLRGALFIYDHKKQDSWNVTHPTF 201 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEE--EEEEETTTTEEEEEETTTTEEEEEECGGG
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccE--EEEEcCCCCcEEEEECCCCcEEEEccCCC
Confidence 5677777777 7776665321 2346777777 22 11111 1345556788999999987654333100
Q ss_pred -----------------CCCeeEEEECCC----CCEEEEeeCCCcEEEEeccC-----ceEeeccc-ccccc--cceeeE
Q 019482 244 -----------------RKPASVLSISLD----GKYLAMGSKDGDICVVDVKK-----MEINHWSK-RLHLG--TSIALV 294 (340)
Q Consensus 244 -----------------~~~i~~~~~s~~----~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~-~~~~~--~~i~~~ 294 (340)
...+..++++|+ ++.|......+ -++|.+.+ ......+. .+..+ ..-..+
T Consensus 202 ~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~ 280 (381)
T 3q6k_A 202 KAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIAL 280 (381)
T ss_dssp SCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEE
T ss_pred ccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceE
Confidence 136778899997 77777766544 33444332 11111110 11111 223345
Q ss_pred EEe-cCCeEEEEEecCCcEEEEEecC
Q 019482 295 EFC-PTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 295 ~~~-~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
+.. .+|.++++--....|..|+...
T Consensus 281 ~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 281 AYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 665 6788888888888999998754
No 371
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=75.02 E-value=32 Score=27.85 Aligned_cols=237 Identities=9% Similarity=0.018 Sum_probs=119.6
Q ss_pred CeEEEEecCCCEEEEEecCceeeeee-ccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEE---eCCCC------c
Q 019482 76 DDFVCSTTNGGCKLFEVYGGATDINL-LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM---HWPSL------R 145 (340)
Q Consensus 76 ~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~---d~~~~------~ 145 (340)
+.+++.+.+|.|+--.+.+.+....- .......+.....+..+........|+.-+..|.++-. +++.. .
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~ 83 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ 83 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence 46677788887776654332111000 00001111233455555555555566666667765544 44422 2
Q ss_pred eeecccc--CccceeEEEecC---CCCeEEEeeCCCeEEEEEccCCee-----EEEeecCCCCceeeEEEccCCCcceEE
Q 019482 146 IILDEPK--AHKSVLDMDFSL---DSEFLATTSTDGSARIWKTEDGVA-----WTFLTRNSDEKIELCRFSKDGTKPFLF 215 (340)
Q Consensus 146 ~~~~~~~--~~~~i~~~~~~~---~~~~l~~~~~d~~v~iwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (340)
.+..+.. ....|..+..-+ +..+++..+.+|.++--.+..-.. +..+.......+..+........
T Consensus 84 ~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~---- 159 (327)
T 3uc1_A 84 HVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDD---- 159 (327)
T ss_dssp EHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCE----
T ss_pred EHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCE----
Confidence 2222221 223555544333 467899999999999988754221 11111112234444444444443
Q ss_pred EEEecCCcceEEEEECC--CCc---------EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEe-----
Q 019482 216 CTVQRGDKALLAVYDIS--TWN---------KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN----- 279 (340)
Q Consensus 216 ~~~~~~~d~~i~i~d~~--~~~---------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~----- 279 (340)
++..+..|.+..+... .-. ..-.+. ....|.++...+++.+++..+..|.++.-.+......
T Consensus 160 -ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~ 237 (327)
T 3uc1_A 160 -LLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGK 237 (327)
T ss_dssp -EEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSC
T ss_pred -EEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCC
Confidence 3444556777666655 211 111111 2345666666666778999999999998876542221
Q ss_pred --ecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 280 --HWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 280 --~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
..+........+..+....+...++..+.+|.+.-+...
T Consensus 238 G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 238 GVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp CEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred cEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 111111112345454444444556666777776666554
No 372
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=72.40 E-value=19 Score=31.69 Aligned_cols=61 Identities=20% Similarity=0.050 Sum_probs=41.4
Q ss_pred ceeeEEEccCCCcceEEEEEecC-----------CcceEEEEECCCCcEEeeeecc-CCCeeEEEECCCCCEEEEee
Q 019482 199 KIELCRFSKDGTKPFLFCTVQRG-----------DKALLAVYDISTWNKIGHKRLL-RKPASVLSISLDGKYLAMGS 263 (340)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~~~~~~-----------~d~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~ 263 (340)
....+.|.++|... +.+.. ..+.+..++..+++....+... ...++.++|+||++.|++.-
T Consensus 477 sPDnL~fd~~G~LW----f~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLW----ILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEE----EEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEE----EEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 35678999998741 11222 1236777888778765555433 35689999999999988874
No 373
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=72.07 E-value=34 Score=26.86 Aligned_cols=196 Identities=10% Similarity=0.057 Sum_probs=101.8
Q ss_pred CCeeEEEEcCCCCeEEEEecCCCEEEE---EecCceeeeeeccccCCCCCCCCCeEEEEEec--CCCeEEEccCCCcEEE
Q 019482 64 GDPMTIAVNPSGDDFVCSTTNGGCKLF---EVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRI 138 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~ 138 (340)
+.+..+.-....++|+.-+..|.++-- ++....... . +.....|..+.. + +..+++.++.+|.++-
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~------l--l~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr 94 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS------L--KSREEKIVGAFI-REKFGNRLLLATKKGYVKK 94 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC------C--SSTTCCEEEEEE-GGGSCSEEEEEETTSEEEE
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc------c--CCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEE
Confidence 345555444455567667777755433 222221111 1 334456666644 4 4678999999999999
Q ss_pred EeCCCCc------eeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCe-------eEEEeecCCCCceeeEEE
Q 019482 139 MHWPSLR------IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV-------AWTFLTRNSDEKIELCRF 205 (340)
Q Consensus 139 ~d~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-------~~~~~~~~~~~~v~~~~~ 205 (340)
..+..-. ....+.. .+.+..+........++..+..|.+..+....-. -+.-+....++.+..+..
T Consensus 95 ~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~ 173 (276)
T 3no0_A 95 IPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRI 173 (276)
T ss_dssp EEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEE
T ss_pred EEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEE
Confidence 8865432 1122222 2345555554455577777888998888764311 111111122334555544
Q ss_pred ccCCCcceEEEEEecCCcceEEEEECCC-------CcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEE--EeccC
Q 019482 206 SKDGTKPFLFCTVQRGDKALLAVYDIST-------WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV--VDVKK 275 (340)
Q Consensus 206 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i--~d~~~ 275 (340)
.+++.. ++..+..|.++...+.. ++-+..+ .....+..+....+...++..+.+|.+.. ++...
T Consensus 174 ~~~~~~-----ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 174 WNGEPY-----LLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp ESSCSE-----EEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred eCCCCE-----EEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 444443 44455666666666432 1111122 22334444433333446666677777777 76654
No 374
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.97 E-value=15 Score=35.68 Aligned_cols=36 Identities=8% Similarity=0.080 Sum_probs=29.5
Q ss_pred CeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeec
Q 019482 114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD 149 (340)
Q Consensus 114 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 149 (340)
.+.+++..++..++++-+.|+++|+|++.+++++..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t 274 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 274 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEe
Confidence 445566677888999999999999999999887654
No 375
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=65.59 E-value=36 Score=30.94 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=26.8
Q ss_pred CeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeec
Q 019482 114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD 149 (340)
Q Consensus 114 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 149 (340)
.|.++.+ +..++++-+.|.++|+|++.+++++..
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t 256 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQD 256 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEe
Confidence 4555554 467999999999999999999886544
No 376
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=62.08 E-value=59 Score=25.94 Aligned_cols=241 Identities=8% Similarity=-0.011 Sum_probs=116.0
Q ss_pred CCCCeEEEEecCCCEEEEEecCceeeeee-ccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEe---CCC-----
Q 019482 73 PSGDDFVCSTTNGGCKLFEVYGGATDINL-LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH---WPS----- 143 (340)
Q Consensus 73 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d---~~~----- 143 (340)
|+.+.+++.+.+|.|+--.+..-+....- .......+...+.+..+........|+..+..|.++-+. ++.
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 45567888889998877666443211110 000000112334555555555556677777788755554 332
Q ss_pred -Cceeeccc--cCccceeEEEec---CCCCeEEEeeCCCeEEEEEccCCe-----eEEEeecCCCCceeeEEEccCCCcc
Q 019482 144 -LRIILDEP--KAHKSVLDMDFS---LDSEFLATTSTDGSARIWKTEDGV-----AWTFLTRNSDEKIELCRFSKDGTKP 212 (340)
Q Consensus 144 -~~~~~~~~--~~~~~i~~~~~~---~~~~~l~~~~~d~~v~iwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (340)
|..+..+. ...+.|..+..- .++.+++..+.+|.++--.+..-. -+..+.......+-.+....+...
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~- 159 (307)
T 1zi0_A 81 RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE- 159 (307)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCE-
T ss_pred CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCE-
Confidence 22221111 222355555432 345678888999999998775211 111111111233444444433333
Q ss_pred eEEEEEecCCcceEEEEECCCCcE-------Eeeeec-cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE------
Q 019482 213 FLFCTVQRGDKALLAVYDISTWNK-------IGHKRL-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI------ 278 (340)
Q Consensus 213 ~~~~~~~~~~d~~i~i~d~~~~~~-------~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~------ 278 (340)
++..+.+|.+..++...-.. +.-+.. ....|.++...+++..+++.+..|..+-.++.....
T Consensus 160 ----i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~k 235 (307)
T 1zi0_A 160 ----VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATK 235 (307)
T ss_dssp ----EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSC
T ss_pred ----EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCC
Confidence 44455566666666532111 111111 234566665555566788889999999887743221
Q ss_pred -eecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 279 -NHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 279 -~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
...+........+-.+....+...++..+.+|.+.-..+.
T Consensus 236 G~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~ 276 (307)
T 1zi0_A 236 GVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVS 276 (307)
T ss_dssp CEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGG
T ss_pred CEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecc
Confidence 1111111112345444443344445566667766555554
No 377
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=60.05 E-value=1.2e+02 Score=28.85 Aligned_cols=37 Identities=8% Similarity=0.082 Sum_probs=31.5
Q ss_pred CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeec
Q 019482 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD 149 (340)
Q Consensus 113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 149 (340)
..+.++...++..++++-+.|+++|+|++.+++++..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 272 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence 3567788888888999999999999999999887654
No 378
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=59.73 E-value=67 Score=25.86 Aligned_cols=237 Identities=9% Similarity=-0.004 Sum_probs=119.1
Q ss_pred CCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC---CC------
Q 019482 73 PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW---PS------ 143 (340)
Q Consensus 73 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~---~~------ 143 (340)
|+.+.+++.+.+|.|+--.+...+.. ......+...+.+..+........|+..+..|.++-+.. +.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~----~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~ 78 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAAS----NGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDL 78 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHT----TTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSC
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhc----CccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCC
Confidence 56677888999998887765432110 000111223455655555555667777777887655543 22
Q ss_pred Cceeeccc--cCccceeEEEecC---CCCeEEEeeCCCeEEEEEccCC------eeEEEeecCCCCceeeEEEccCCCcc
Q 019482 144 LRIILDEP--KAHKSVLDMDFSL---DSEFLATTSTDGSARIWKTEDG------VAWTFLTRNSDEKIELCRFSKDGTKP 212 (340)
Q Consensus 144 ~~~~~~~~--~~~~~i~~~~~~~---~~~~l~~~~~d~~v~iwd~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (340)
|..+.... ...+.|..+..-+ ++.+++..+.+|.++--.+..- .-+..+.......+-.+........
T Consensus 79 G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~- 157 (323)
T 1wp5_A 79 GQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNE- 157 (323)
T ss_dssp CEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSE-
T ss_pred CcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCE-
Confidence 22222221 1223455543323 2567888899999999887521 1122222112233444444433333
Q ss_pred eEEEEEecCCcceEEEEECCCCc-------EEeeeec-cCCCeeEEEECCCCC-EEEEeeCCCcEEEEeccCce------
Q 019482 213 FLFCTVQRGDKALLAVYDISTWN-------KIGHKRL-LRKPASVLSISLDGK-YLAMGSKDGDICVVDVKKME------ 277 (340)
Q Consensus 213 ~~~~~~~~~~d~~i~i~d~~~~~-------~~~~~~~-~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~------ 277 (340)
++..+.+|.+..++...-. -+.-+.. ....|.++..-+++. .+++.+..|..+..++....
T Consensus 158 ----i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~ 233 (323)
T 1wp5_A 158 ----LFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAK 233 (323)
T ss_dssp ----EEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTS
T ss_pred ----EEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCC
Confidence 4455667777777653211 1111111 123455554434444 78888889988887775421
Q ss_pred -Eeeccccc-ccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482 278 -INHWSKRL-HLGTSIALVEFCPTQRVVLTASKEWGAMITKLT 318 (340)
Q Consensus 278 -~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~ 318 (340)
-...+... ..+..+..+....++..++..+..|.+.-..+.
T Consensus 234 kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 234 RGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp CCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred CCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence 11111100 101234433333334445566667766555554
No 379
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=58.99 E-value=75 Score=26.16 Aligned_cols=184 Identities=8% Similarity=-0.012 Sum_probs=84.5
Q ss_pred CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCC----cEEEEeCCCCc---ee
Q 019482 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDG----HLRIMHWPSLR---II 147 (340)
Q Consensus 76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg----~i~~~d~~~~~---~~ 147 (340)
..|.++...| +.+++...+.......... .....|.+|++.| +...|.++...| .|...+ ..++ .+
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~----~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~ 96 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPV----FLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEA 96 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEE----STTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEEC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCcc----CCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceEC
Confidence 3677777777 6666654311111111000 1235789999998 333454454444 344332 2222 11
Q ss_pred ec---ccc--------CccceeEEEecC-C-CCeEEEeeCCCeEEEEEccCCeeEEEeec------------------CC
Q 019482 148 LD---EPK--------AHKSVLDMDFSL-D-SEFLATTSTDGSARIWKTEDGVAWTFLTR------------------NS 196 (340)
Q Consensus 148 ~~---~~~--------~~~~i~~~~~~~-~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~------------------~~ 196 (340)
.. +.. ....|.++++.| + ...+..+...+.|...+ ..++....+.. ..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~ 175 (394)
T 3b7f_A 97 TRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPD 175 (394)
T ss_dssp SBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CC
T ss_pred CccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCC
Confidence 11 111 112577888887 3 45566665555554432 22333222211 01
Q ss_pred CCceeeEEEccCC-CcceEEEEEecCCcceEEEEECC--CCcEEee-eec---------cCCCeeEEEECCC-CCEEEEe
Q 019482 197 DEKIELCRFSKDG-TKPFLFCTVQRGDKALLAVYDIS--TWNKIGH-KRL---------LRKPASVLSISLD-GKYLAMG 262 (340)
Q Consensus 197 ~~~v~~~~~~~~~-~~~~~~~~~~~~~d~~i~i~d~~--~~~~~~~-~~~---------~~~~i~~~~~s~~-~~~l~~~ 262 (340)
...+.++.++|.. .. +..+..++.|...+-. +.+.+.. ... ....+.++.++|+ ...|.++
T Consensus 176 ~~~i~~i~~d~~~~~~-----l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg 250 (394)
T 3b7f_A 176 GPKMHSILVDPRDPKH-----LYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQ 250 (394)
T ss_dssp CCEEEEEEECTTCTTC-----EEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEE
T ss_pred CCceeEEEECCCCCCE-----EEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEE
Confidence 2347788898843 33 2222223333333211 1222110 000 0124788999985 4567666
Q ss_pred eCCCcEEEEe
Q 019482 263 SKDGDICVVD 272 (340)
Q Consensus 263 ~~dg~i~i~d 272 (340)
...+ |...+
T Consensus 251 ~~~g-l~~s~ 259 (394)
T 3b7f_A 251 NHCG-IYRMD 259 (394)
T ss_dssp ETTE-EEEEE
T ss_pred cCCe-EEEeC
Confidence 6544 54443
No 380
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=56.27 E-value=1.1e+02 Score=27.18 Aligned_cols=99 Identities=11% Similarity=0.070 Sum_probs=51.9
Q ss_pred CeEEEEEccCCeeEEEeecCCC------------CceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeecc
Q 019482 176 GSARIWKTEDGVAWTFLTRNSD------------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL 243 (340)
Q Consensus 176 ~~v~iwd~~~~~~~~~~~~~~~------------~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 243 (340)
..|..||.+.++....+..... ..+.-..+.-||+.-.++.-..-..||++ +|... ..|
T Consensus 296 ~~v~A~d~~~g~L~~~W~~ds~~~~~~~~~gqg~H~~svaDVDGDG~dEIv~Gs~~iD~dG~~-L~st~--------~gH 366 (620)
T 2zuy_A 296 TVLVAYDFRNGRLKKRWVFDSNQPGHEAYAGQGNHSLSVADVDGDGKDEIIYGAMAVDHDGTG-LYSTG--------LGH 366 (620)
T ss_dssp CEEEEEEEETTEEEEEEEEETTSTTCGGGTTCCCSSCEEECCSSSSSCEEEETTEEECTTSSE-EEECS--------CCC
T ss_pred eeEEEEEccCCceeeeeEecCCCCcccccccccCcCceEEecCCCCceeEEEeeeEECCCCCE-EeecC--------CCC
Confidence 4577888887765444321111 12344445556655322111111223322 33322 255
Q ss_pred CCCeeEEEECCC--CCEEEEeeCC----CcEEEEeccCceEeeccc
Q 019482 244 RKPASVLSISLD--GKYLAMGSKD----GDICVVDVKKMEINHWSK 283 (340)
Q Consensus 244 ~~~i~~~~~s~~--~~~l~~~~~d----g~i~i~d~~~~~~~~~~~ 283 (340)
...+..-.|.|+ |..++.+.++ .-..+.|.++++.+....
T Consensus 367 GDa~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~ 412 (620)
T 2zuy_A 367 GDAMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVH 412 (620)
T ss_dssp CSCEEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEEC
T ss_pred CceeEEEecCCCCCCCEEEEEecCCCCCCceEEEECCCCcEEEEec
Confidence 666666677786 4556665554 246778888888876553
No 381
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=52.76 E-value=87 Score=25.02 Aligned_cols=163 Identities=12% Similarity=0.075 Sum_probs=85.4
Q ss_pred CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeee-eeccc---cCCCCCCCCCeEEEEEec---CCCeEEEccCCCcE
Q 019482 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI-NLLAK---KMPPLQDAGPQKCLSFSV---DGSRFAAGGVDGHL 136 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~-~~~~~---~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i 136 (340)
+.+..+......+.++..+..|.++-.....-.... .-... ....+.....|..+...+ +..+++..+..|.+
T Consensus 47 D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~ 126 (312)
T 1suu_A 47 DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKI 126 (312)
T ss_dssp CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEE
T ss_pred CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeE
Confidence 344455444456677778888876666654211100 00000 011123334555554333 45678888999999
Q ss_pred EEEeCCC-------CceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCC-------eeEEEeecCCCCceee
Q 019482 137 RIMHWPS-------LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-------VAWTFLTRNSDEKIEL 202 (340)
Q Consensus 137 ~~~d~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-------~~~~~~~~~~~~~v~~ 202 (340)
+-..+.. +.....+.. .+.+..+....+...++..+.+|.+..+....- +-+..+.......+..
T Consensus 127 kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~ 205 (312)
T 1suu_A 127 ARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVK 205 (312)
T ss_dssp EEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEE
T ss_pred EEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEE
Confidence 8887642 222222333 345555555444556777888999998887541 1112222122334555
Q ss_pred EEEccCCCcceEEEEEecCCcceEEEEECC
Q 019482 203 CRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (340)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~ 232 (340)
+..-+++.. ++..+..|..+..++.
T Consensus 206 ~~~v~~~~~-----l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 206 VLSVKENPY-----LLIVSENGYGKRLNMS 230 (312)
T ss_dssp EEECTTCSE-----EEEEETTSEEEEEEGG
T ss_pred EEEECCCCe-----EEEEECCCceEEEEHH
Confidence 544444443 3445566777777764
No 382
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=51.69 E-value=48 Score=21.69 Aligned_cols=10 Identities=20% Similarity=0.428 Sum_probs=6.2
Q ss_pred eeEEEccCCC
Q 019482 201 ELCRFSKDGT 210 (340)
Q Consensus 201 ~~~~~~~~~~ 210 (340)
..+.+..+|.
T Consensus 59 ~~l~l~~dGN 68 (113)
T 3mez_B 59 CFMRLGHSGE 68 (113)
T ss_dssp CEEEECTTSC
T ss_pred EEEEEeCCCc
Confidence 3456666776
No 383
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=51.18 E-value=92 Score=24.81 Aligned_cols=205 Identities=9% Similarity=0.089 Sum_probs=100.1
Q ss_pred CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeee-eccc---cCCCCCCCCCeEEEEEe---cCCCeEEEccCCCcEE
Q 019482 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN-LLAK---KMPPLQDAGPQKCLSFS---VDGSRFAAGGVDGHLR 137 (340)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~-~~~~---~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~ 137 (340)
.+..+......+.|+..+..|.++-+....-..... -... ..-.+.....|..+..- .+..+++.++.+|.++
T Consensus 43 ~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~K 122 (307)
T 1zi0_A 43 FIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVK 122 (307)
T ss_dssp CEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEE
T ss_pred EEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEE
Confidence 344444444556777777788665555432111000 0000 11122334456555432 3456788889999999
Q ss_pred EEeCCCC-------ceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCe-------eEEEeecCCCCceeeE
Q 019482 138 IMHWPSL-------RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV-------AWTFLTRNSDEKIELC 203 (340)
Q Consensus 138 ~~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-------~~~~~~~~~~~~v~~~ 203 (340)
-..+... .....+... +.+..+....+...++..+.+|.+..++...-. -+.-+....++.+.++
T Consensus 123 rt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~ 201 (307)
T 1zi0_A 123 KTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSL 201 (307)
T ss_dssp EEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEE
T ss_pred EEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEE
Confidence 8876421 122223233 445454444444567777778888888764311 1111221223445555
Q ss_pred EEccCCCcceEEEEEecCCcceEEEEECCCCc---------EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEecc
Q 019482 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWN---------KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK 274 (340)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~---------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 274 (340)
...+++.. ++..+..|..+-.++..-. ....+....+.+-.+....+...++..+.+|.+.-++..
T Consensus 202 ~~~~~~~~-----ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~ 276 (307)
T 1zi0_A 202 IVPRGDGA-----ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVS 276 (307)
T ss_dssp ECCCSSCE-----EEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGG
T ss_pred EEecCCCE-----EEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecc
Confidence 44444333 3444556667666652211 111111122344443333334555666667776666654
Q ss_pred C
Q 019482 275 K 275 (340)
Q Consensus 275 ~ 275 (340)
.
T Consensus 277 ~ 277 (307)
T 1zi0_A 277 E 277 (307)
T ss_dssp G
T ss_pred c
Confidence 4
No 384
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=49.26 E-value=59 Score=28.47 Aligned_cols=67 Identities=12% Similarity=0.061 Sum_probs=40.5
Q ss_pred eeEEEECCC--CCEEEEeeCCCcEEEEeccCc----eEeeccccccccccee-eEEEecCCeEEEEEecCCcEE
Q 019482 247 ASVLSISLD--GKYLAMGSKDGDICVVDVKKM----EINHWSKRLHLGTSIA-LVEFCPTQRVVLTASKEWGAM 313 (340)
Q Consensus 247 i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~ 313 (340)
+++++.... -..++.|+.+|.|.-..+... ..+..+.....+.+|. .+.+++++.+|..++.++.++
T Consensus 402 lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~k 475 (539)
T 3al9_A 402 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTR 475 (539)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEE
T ss_pred eEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEeccccce
Confidence 445554442 345777889998765555322 1222221112145785 999999999999998885443
No 385
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=48.95 E-value=1e+02 Score=24.77 Aligned_cols=206 Identities=10% Similarity=0.012 Sum_probs=98.6
Q ss_pred CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeee-eccc---cCCCCCCCCCeEEEEEec---CCCeEEEccCCCcE
Q 019482 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN-LLAK---KMPPLQDAGPQKCLSFSV---DGSRFAAGGVDGHL 136 (340)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~-~~~~---~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i 136 (340)
+.+..+......+.|+..+..|.+.-+....-..... -... ..-.+.....|..+..-+ ++.+++.++.+|.+
T Consensus 39 D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~i 118 (323)
T 1wp5_A 39 DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMV 118 (323)
T ss_dssp CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEE
T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeE
Confidence 3344444444566777777788665555432111000 0000 111223344555543333 25678889999999
Q ss_pred EEEeCCCC--------ceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCe-------eEEEeecCCCCcee
Q 019482 137 RIMHWPSL--------RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV-------AWTFLTRNSDEKIE 201 (340)
Q Consensus 137 ~~~d~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-------~~~~~~~~~~~~v~ 201 (340)
+-..+... .....+... +.+..+........++..+.+|.+..+....-. -+.-+....+..|.
T Consensus 119 Krt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv 197 (323)
T 1wp5_A 119 KKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIV 197 (323)
T ss_dssp EEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEE
T ss_pred EEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEE
Confidence 99877421 122223222 445455444445567777788998888875311 11112212233455
Q ss_pred eEEEccCCC-cceEEEEEecCCcceEEEEECCC-------CcEEeeee---ccCCCeeEEEECCCCCEEEEeeCCCcEEE
Q 019482 202 LCRFSKDGT-KPFLFCTVQRGDKALLAVYDIST-------WNKIGHKR---LLRKPASVLSISLDGKYLAMGSKDGDICV 270 (340)
Q Consensus 202 ~~~~~~~~~-~~~~~~~~~~~~d~~i~i~d~~~-------~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 270 (340)
++...+++. . ++..+..|..+..++.. ++-+.... .....+..+....++..++..+.+|.+..
T Consensus 198 ~~~~~~~~~~~-----ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir 272 (323)
T 1wp5_A 198 SGQLITSKDES-----IVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIET 272 (323)
T ss_dssp EEEEECCTTCE-----EEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEE
T ss_pred EEEEEcCCCcE-----EEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEE
Confidence 554433333 2 33444555555555432 11111111 11223443322233445666666777666
Q ss_pred EeccC
Q 019482 271 VDVKK 275 (340)
Q Consensus 271 ~d~~~ 275 (340)
+++..
T Consensus 273 ~~~~~ 277 (323)
T 1wp5_A 273 IKVGD 277 (323)
T ss_dssp EEGGG
T ss_pred EEhhh
Confidence 66544
No 386
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=48.39 E-value=55 Score=28.29 Aligned_cols=74 Identities=15% Similarity=0.176 Sum_probs=41.9
Q ss_pred CeeEEEEcC----CCC--eEEEEecCCCEEEEEecCcee---eeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCc
Q 019482 65 DPMTIAVNP----SGD--DFVCSTTNGGCKLFEVYGGAT---DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH 135 (340)
Q Consensus 65 ~v~~~~~~~----~~~--~l~~~~~d~~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 135 (340)
..++|+... ++. .+..|+.+|.|.=.-+..... ......++...++...+|..|.++++..+|++++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 456666543 243 566788888765433322111 01111111222334578999999999999999988776
Q ss_pred EEE
Q 019482 136 LRI 138 (340)
Q Consensus 136 i~~ 138 (340)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 387
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=44.93 E-value=63 Score=27.94 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=35.3
Q ss_pred CEEEEeeCCCcEEEEec-cCce-------EeecccccccccceeeEEEecCCeEEEEEecCCcEEE
Q 019482 257 KYLAMGSKDGDICVVDV-KKME-------INHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI 314 (340)
Q Consensus 257 ~~l~~~~~dg~i~i~d~-~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 314 (340)
..++.|+.+|.|.-.-+ ..+. .+..+.....+.+|..+.++++..+|..++.++.++|
T Consensus 422 tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 422 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 34677888887654333 2211 1111211112468999999999999999998865543
No 388
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=44.65 E-value=45 Score=30.11 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=37.0
Q ss_pred eEEEEecCCCEE-EEEecCce--eeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEE
Q 019482 77 DFVCSTTNGGCK-LFEVYGGA--TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI 138 (340)
Q Consensus 77 ~l~~~~~d~~i~-iw~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 138 (340)
.+..|+.+|.|. +....... .......++...+....+|..|.++++.++|++++.++.+++
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 566788888664 33222111 111111122233446678999999999999999988775554
No 389
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=42.23 E-value=2.1e+02 Score=26.44 Aligned_cols=145 Identities=11% Similarity=0.028 Sum_probs=66.1
Q ss_pred CCCeeEEEEcCCC-CeEEEEecCCCEEEEEecCceeeeeeccccCCC-CCCCCCeEEEEEecC-CCeEEEccCCCc----
Q 019482 63 EGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP-LQDAGPQKCLSFSVD-GSRFAAGGVDGH---- 135 (340)
Q Consensus 63 ~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~l~~~~~dg~---- 135 (340)
...|.+|+++|.. ..++++...+.|...+ +.++.-..+ ...... .-....+.++++.|. ...++.+..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~-~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPL-NDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEES-CTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeEC-ccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence 3579999999963 4566666666544333 222222221 110000 001247899999984 334444332211
Q ss_pred EEEEeC-CCCceeeccc---------cCccceeEEEecCC-CCeEEEeeCCCeEEEEEccCCeeEEEeec-----CCCCc
Q 019482 136 LRIMHW-PSLRIILDEP---------KAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTR-----NSDEK 199 (340)
Q Consensus 136 i~~~d~-~~~~~~~~~~---------~~~~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-----~~~~~ 199 (340)
-.||.- ..++.=.... .....+..++++|. .+.+..+...+.|. ...+.++.-..+.. .....
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTC
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCC
Confidence 233332 2222111110 00113556888884 44555555343332 12223333333321 11234
Q ss_pred eeeEEEccCCC
Q 019482 200 IELCRFSKDGT 210 (340)
Q Consensus 200 v~~~~~~~~~~ 210 (340)
+..+.++|...
T Consensus 171 ~~~i~~~p~~~ 181 (789)
T 1sqj_A 171 YTSVIFDPERN 181 (789)
T ss_dssp EEEEEECTTST
T ss_pred eEEEEECCCCC
Confidence 77888888643
No 390
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=40.08 E-value=1.3e+02 Score=23.24 Aligned_cols=119 Identities=11% Similarity=0.087 Sum_probs=63.9
Q ss_pred CeeEEEEcCCCCeEEEEecCCCEEEEEecCc---eeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC
Q 019482 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGG---ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (340)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~ 141 (340)
.+..+......+.|+..+..|.++-+....- +..-.... ..-.+.....|.++....++.+|+.++..|.++...+
T Consensus 34 ~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~-~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~ 112 (256)
T 1zvt_A 34 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLT-GKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTF 112 (256)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGG-GTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEG
T ss_pred EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEee-eeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEH
Confidence 3444433334556677777786655544321 11000000 1122334456776644345667888899999998877
Q ss_pred CC-------CceeeccccCccceeEEEec-CCCCeEEEeeCCCeEEEEEccC
Q 019482 142 PS-------LRIILDEPKAHKSVLDMDFS-LDSEFLATTSTDGSARIWKTED 185 (340)
Q Consensus 142 ~~-------~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~v~iwd~~~ 185 (340)
.. +.....+.. .+.+..+... .++..++..+.+|.+..+....
T Consensus 113 ~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~e 163 (256)
T 1zvt_A 113 NDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFPVSD 163 (256)
T ss_dssp GGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEEGGG
T ss_pred HHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHH
Confidence 43 222222322 2344444444 2345677777788888888754
No 391
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=38.72 E-value=2.2e+02 Score=25.70 Aligned_cols=69 Identities=12% Similarity=0.145 Sum_probs=42.0
Q ss_pred CeeEEEEC----CCC---CEEEEeeCCCcEEEE-eccCce-EeecccccccccceeeEEEecCC--eEEEEEecCCcEEE
Q 019482 246 PASVLSIS----LDG---KYLAMGSKDGDICVV-DVKKME-INHWSKRLHLGTSIALVEFCPTQ--RVVLTASKEWGAMI 314 (340)
Q Consensus 246 ~i~~~~~s----~~~---~~l~~~~~dg~i~i~-d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i 314 (340)
..++++.. +++ ..++.|+.+|.|.-. ...... .+..+.....+.+|..+.++++. .+|..++.++.++|
T Consensus 398 ~~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 398 NYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred ceEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 35566653 344 367888999987533 333322 22222112224689999999988 88998888865544
No 392
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=38.38 E-value=2.4e+02 Score=26.03 Aligned_cols=110 Identities=9% Similarity=0.062 Sum_probs=50.9
Q ss_pred CCeeEEEEcCCC-CeEEEEecCCC----EEEEEecCceeeeeeccccCCC---CCCCCCeEEEEEecC-CCeEEEccCCC
Q 019482 64 GDPMTIAVNPSG-DDFVCSTTNGG----CKLFEVYGGATDINLLAKKMPP---LQDAGPQKCLSFSVD-GSRFAAGGVDG 134 (340)
Q Consensus 64 ~~v~~~~~~~~~-~~l~~~~~d~~----i~iw~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~-~~~l~~~~~dg 134 (340)
..|.+++++|.. ..++.+..+.. -.||.-.++-...+........ ......+..+++.|. .+.++.+...+
T Consensus 64 ~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~ 143 (789)
T 1sqj_A 64 MGTESIALDPNNPDRLYLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTE 143 (789)
T ss_dssp CSEEEEEEETTEEEEEEEEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSS
T ss_pred CceeEEEECCCCCCEEEEEeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccC
Confidence 468999999843 34444432211 3455544332222222111100 011123566888874 44555555344
Q ss_pred cEEEEeCCC-C---ceeeccc---cCccceeEEEecC-CCCeEEEeeCC
Q 019482 135 HLRIMHWPS-L---RIILDEP---KAHKSVLDMDFSL-DSEFLATTSTD 175 (340)
Q Consensus 135 ~i~~~d~~~-~---~~~~~~~---~~~~~i~~~~~~~-~~~~l~~~~~d 175 (340)
.| |--.. + +.+.... .....+..+.++| ++..++.+..+
T Consensus 144 gl--~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 144 GI--WKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CE--EEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred CE--EEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 33 32222 2 2222111 1113578889988 44566666554
No 393
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=37.39 E-value=85 Score=20.45 Aligned_cols=25 Identities=4% Similarity=0.073 Sum_probs=13.0
Q ss_pred eEEEecCCeEEEEEecCCcEEEEEecC
Q 019482 293 LVEFCPTQRVVLTASKEWGAMITKLTV 319 (340)
Q Consensus 293 ~~~~~~~~~~l~~~~~dg~i~iw~~~~ 319 (340)
.+.+..+|++++... ++. .+|.-..
T Consensus 60 ~l~l~~dGNLVl~d~-~~~-~iW~S~t 84 (113)
T 3mez_B 60 FMRLGHSGELDITDD-RLN-TVFVSNT 84 (113)
T ss_dssp EEEECTTSCEEEECT-TSC-EEEECSC
T ss_pred EEEEeCCCcEEEECC-CCC-EEEECCC
Confidence 455666666555432 333 2566544
No 394
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=36.64 E-value=1.1e+02 Score=27.76 Aligned_cols=56 Identities=21% Similarity=0.204 Sum_probs=34.7
Q ss_pred EEEEeeCCCcEE-EEeccCce-------EeecccccccccceeeEEEecCCeEEEEEecCCcEE
Q 019482 258 YLAMGSKDGDIC-VVDVKKME-------INHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAM 313 (340)
Q Consensus 258 ~l~~~~~dg~i~-i~d~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 313 (340)
.++.|+.+|.|. +....... .+..+.....+.+|..+.++++...|..++.++.++
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~k 494 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQ 494 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEE
Confidence 567788888875 33222111 111121222256899999999999999998886444
No 395
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=32.06 E-value=1.4e+02 Score=26.47 Aligned_cols=58 Identities=12% Similarity=0.036 Sum_probs=34.9
Q ss_pred CEEEEeeCCCcEEEEec-cCc----e-EeecccccccccceeeEEEecCCeEEEEEecCCcEEE
Q 019482 257 KYLAMGSKDGDICVVDV-KKM----E-INHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI 314 (340)
Q Consensus 257 ~~l~~~~~dg~i~i~d~-~~~----~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 314 (340)
..++.|+.+|.|.-.-. ..+ . .+..+.......+|..+.++++...|..++.++.++|
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 35677888888764322 222 1 1111111112468999999999989998888754443
No 396
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=31.24 E-value=1.1e+02 Score=26.89 Aligned_cols=74 Identities=14% Similarity=0.088 Sum_probs=42.0
Q ss_pred CCeeEEEEcCCCC--eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeE-EEEEecCCCeEEEccCCCcEEE
Q 019482 64 GDPMTIAVNPSGD--DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK-CLSFSVDGSRFAAGGVDGHLRI 138 (340)
Q Consensus 64 ~~v~~~~~~~~~~--~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~ 138 (340)
...++|+....+. .+..|..+|.|.=..+......... .+.........+|. .|.+++++.+|++++.++.++|
T Consensus 400 ~~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~-~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 400 DRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQ-YEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp SCEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEE-EEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred cceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCcccee-EEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 3466666655333 5667888987755555422111001 11111122345774 8999999999998887654444
No 397
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=28.21 E-value=1.5e+02 Score=26.27 Aligned_cols=62 Identities=10% Similarity=0.122 Sum_probs=36.4
Q ss_pred eEEEEecCCCEEEEEecCce-eeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEE
Q 019482 77 DFVCSTTNGGCKLFEVYGGA-TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI 138 (340)
Q Consensus 77 ~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 138 (340)
.+..|+.+|.|.-.-+.... ........+...+....+|..+.++++...|++++.++.+++
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 56678888877543332211 000111111222234578899999999889998887765554
No 398
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=26.47 E-value=2.5e+02 Score=24.77 Aligned_cols=69 Identities=9% Similarity=-0.068 Sum_probs=41.0
Q ss_pred CeeEEEECC----CC--CEEEEeeCCCcEE-EEeccC--c-----eEeec---ccc------cccccceeeEEEecCCeE
Q 019482 246 PASVLSISL----DG--KYLAMGSKDGDIC-VVDVKK--M-----EINHW---SKR------LHLGTSIALVEFCPTQRV 302 (340)
Q Consensus 246 ~i~~~~~s~----~~--~~l~~~~~dg~i~-i~d~~~--~-----~~~~~---~~~------~~~~~~i~~~~~~~~~~~ 302 (340)
..+.++... ++ ..++.|+.+|.|. +..... + ..+.. +.. .....+|..+.++++...
T Consensus 404 ~lT~IaVd~~~g~~~~ytVlFLGTd~G~l~Kvv~~~~~~~~~~~~~~iEEi~vf~~~~~~~~~~~~~pI~~L~ls~~~~~ 483 (565)
T 3oky_B 404 RLTKIAVDNAAGPYQNHTVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRIMGMQLDRASGS 483 (565)
T ss_dssp CEEEEEEEEEETTTTCEEEEEEEETTSEEEEEEECC-----CCCCEEEEEEECCCHHHHCBTTBCCCCCCEEEEEGGGTE
T ss_pred ceEEEEEEEEecCCCceEEEEEECCCCeEEEEEecCCCCccccccEEEEEEEEeccccccccccCCCceEEEEEcCCCCE
Confidence 356777654 22 4577889999875 433221 1 11111 110 011357899999999999
Q ss_pred EEEEecCCcEEE
Q 019482 303 VLTASKEWGAMI 314 (340)
Q Consensus 303 l~~~~~dg~i~i 314 (340)
|..++.++.++|
T Consensus 484 LYV~s~~~V~qV 495 (565)
T 3oky_B 484 LYVAFSTCVIKV 495 (565)
T ss_dssp EEEECSSCEEEE
T ss_pred EEEEecCeEEEe
Confidence 999988865554
No 399
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=23.62 E-value=1.5e+02 Score=19.04 Aligned_cols=13 Identities=23% Similarity=0.266 Sum_probs=7.5
Q ss_pred eEEEECCCCCEEE
Q 019482 248 SVLSISLDGKYLA 260 (340)
Q Consensus 248 ~~~~~s~~~~~l~ 260 (340)
..+.+.++|.+++
T Consensus 85 ~~l~l~~dGnlvl 97 (110)
T 3a0c_A 85 YVLVLQQDRNVVI 97 (110)
T ss_dssp CEEEECTTSCEEE
T ss_pred EEEEEeCCccEEE
Confidence 3456666666544
No 400
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=21.84 E-value=2e+02 Score=26.11 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=35.2
Q ss_pred CEEEEeeCCCcEEEEeccC----ceEeecccccccccce-eeEEEecCCeEEEEEecCCcEEE
Q 019482 257 KYLAMGSKDGDICVVDVKK----MEINHWSKRLHLGTSI-ALVEFCPTQRVVLTASKEWGAMI 314 (340)
Q Consensus 257 ~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~i 314 (340)
..++.|+.+|.|.-.-+.. ...+..+.....+.+| ..+.++++..+|..++.++.++|
T Consensus 413 tVlFLGT~~G~l~Kv~~~~~~~~~~~~ee~~v~~~~~pI~~~l~l~~~~~~Lyv~s~~~V~qv 475 (681)
T 3oky_A 413 SVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 475 (681)
T ss_dssp EEEEEEBTTSEEEEEECCCTTTCCEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred EEEEEECCCceEEEEEECCCCCceEEEEEeeeccCCCceeeeeEEcCCCCEEEEEecCEEEEE
Confidence 4567788899877544332 1122222111124576 69999999888988888754443
No 401
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=20.91 E-value=1.7e+02 Score=18.69 Aligned_cols=9 Identities=22% Similarity=0.375 Sum_probs=5.7
Q ss_pred eEEEccCCC
Q 019482 202 LCRFSKDGT 210 (340)
Q Consensus 202 ~~~~~~~~~ 210 (340)
.+.+..+|.
T Consensus 53 ~l~l~~dGN 61 (109)
T 3dzw_A 53 HLSMQSDGN 61 (109)
T ss_dssp EEEECTTSC
T ss_pred EEEEeCCCC
Confidence 456666666
No 402
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=20.51 E-value=1.9e+02 Score=25.23 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=35.0
Q ss_pred CEEEEeeCCCcEEEEecc-Cce--Eeecccccccccce-eeEEEecCCeEEEEEecCCcEEE
Q 019482 257 KYLAMGSKDGDICVVDVK-KME--INHWSKRLHLGTSI-ALVEFCPTQRVVLTASKEWGAMI 314 (340)
Q Consensus 257 ~~l~~~~~dg~i~i~d~~-~~~--~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~i 314 (340)
..++.|+.+|.|.-.-+. ... .+..+.. ..+.+| ..+.++++...|..++.++.++|
T Consensus 401 tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v-~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 401 TIAFLGDSQGQLHRVYLGPGSDGHPYSTQSI-QQGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp EEEEEEETTSEEEEEECSSSCCSCCSEEEES-STTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCCeeEEeeecc-CCCCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence 345678888887644332 211 1112211 224578 48999999999999988865554
No 403
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=20.08 E-value=2.6e+02 Score=25.33 Aligned_cols=70 Identities=21% Similarity=0.208 Sum_probs=41.6
Q ss_pred CeeEEEEc----CCCC---eEEEEecCCCEEEE-EecCceeeeeeccccCCCCCCCCCeEEEEEecCC--CeEEEccCCC
Q 019482 65 DPMTIAVN----PSGD---DFVCSTTNGGCKLF-EVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG--SRFAAGGVDG 134 (340)
Q Consensus 65 ~v~~~~~~----~~~~---~l~~~~~d~~i~iw-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg 134 (340)
..++|+.. .+++ .+..|..+|.|.=. .......... +...+....+|..|.++++. .+|++++.++
T Consensus 398 ~~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~e----e~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~ 473 (663)
T 1olz_A 398 NYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIE----ETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSG 473 (663)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEE----EEECCTTCCCCCEEEECCSSSSCEEEEECSSC
T ss_pred ceEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCceEEE----EecccCCCCcceeeEeccCCCccEEEEEEcCe
Confidence 35666653 3443 57788888866433 3333221111 12223345788899999987 8888888776
Q ss_pred cEEE
Q 019482 135 HLRI 138 (340)
Q Consensus 135 ~i~~ 138 (340)
.+++
T Consensus 474 V~~v 477 (663)
T 1olz_A 474 VVQA 477 (663)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
No 404
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=20.06 E-value=5e+02 Score=23.69 Aligned_cols=74 Identities=12% Similarity=0.199 Sum_probs=45.7
Q ss_pred CCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC-------ceeeccccCccceeEEEec-CCCCeEEEeeCCCeEEEEE
Q 019482 111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-------RIILDEPKAHKSVLDMDFS-LDSEFLATTSTDGSARIWK 182 (340)
Q Consensus 111 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-------~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~v~iwd 182 (340)
....|..+.-..+..+++.++..|.++.-.+... .....+.. .+.+..+... ..+..++..+.+|.+..|+
T Consensus 552 ~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~L~~-~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~ 630 (716)
T 1zvu_A 552 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFP 630 (716)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCeEEEEEEecCCceEEEEeCCceEEEecHHHhcccCccceEEEeeCC-CCEEEEEEEecCCCCEEEEEeCCCeEEEEE
Confidence 3456666654456778888899999998876432 12222322 2344444444 3345677778889888888
Q ss_pred ccC
Q 019482 183 TED 185 (340)
Q Consensus 183 ~~~ 185 (340)
...
T Consensus 631 ~~~ 633 (716)
T 1zvu_A 631 VSD 633 (716)
T ss_dssp STT
T ss_pred HHH
Confidence 754
Done!