BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019483
(340 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9QXN3|TRIP4_MOUSE Activating signal cointegrator 1 OS=Mus musculus GN=Trip4 PE=1 SV=2
Length = 581
Score = 125 bits (314), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 106/203 (52%), Gaps = 34/203 (16%)
Query: 153 MNRGNQSNNRKKKAGKVISLAE---AAKGSIVFQQGKPCSCQARQHRLISNCLSCGKIVC 209
+ + +SNN KK + ++L K +++ PC C ++H+LI+NCL CG+IVC
Sbjct: 133 LAKAQESNNSVKKKTRFVNLYTREGQDKLAVLLPGRHPCDCLGQKHKLINNCLVCGRIVC 192
Query: 210 EQEGEGPCQFCGALV----------------------LKEGSTYAG---------LEEGF 238
EQEG GPC FCG+LV L G+ +G L
Sbjct: 193 EQEGSGPCLFCGSLVCTNEEQDILQRDSNKSQKLLKKLMSGAETSGKVDVSTKDLLPHQE 252
Query: 239 APLSDAEAAAEAYTKRLVDYDRNAAARTTVIDDQSDYYEIEGNSWLSKEEKELIKKKQEE 298
+ + A + ++L+++DR + RT VIDD+SDY+ + N WLSK E+E+++K++EE
Sbjct: 253 SRMKSGLEKAIKHKEKLLEFDRTSIRRTQVIDDESDYFASDSNQWLSKVEREMLQKREEE 312
Query: 299 VAEAEQAKRNKVVVTFDLVGRKV 321
+ E A R VT D GRK+
Sbjct: 313 LRELRHASRLSKKVTIDFAGRKI 335
>sp|Q15650|TRIP4_HUMAN Activating signal cointegrator 1 OS=Homo sapiens GN=TRIP4 PE=1 SV=4
Length = 581
Score = 118 bits (295), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 108/211 (51%), Gaps = 34/211 (16%)
Query: 145 AESSESRTMNRGNQSNNRKKKAGKVISL--AEAAKGSIVFQQGK-PCSCQARQHRLISNC 201
AE + + +++N KK K ++L E V G+ PC C ++H+LI+NC
Sbjct: 125 AEVKTPFDLAKAQENSNSVKKKTKFVNLYTREGQDRLAVLLPGRHPCDCLGQKHKLINNC 184
Query: 202 LSCGKIVCEQEGEGPCQFCGALV--------LKEGST---------YAGLEE-GFAPLSD 243
L CG+IVCEQEG GPC FCG LV L+ S +G+E G +S
Sbjct: 185 LICGRIVCEQEGSGPCLFCGTLVCTHEEQDILQRDSNKSQKLLKKLMSGVENSGKVDIST 244
Query: 244 AEA-------------AAEAYTKRLVDYDRNAAARTTVIDDQSDYYEIEGNSWLSKEEKE 290
+ A + +L+++DR + RT VIDD+SDY+ + N WLSK E+E
Sbjct: 245 KDLLPHQELRIKSGLEKAIKHKDKLLEFDRTSIRRTQVIDDESDYFASDSNQWLSKLERE 304
Query: 291 LIKKKQEEVAEAEQAKRNKVVVTFDLVGRKV 321
++K++EE+ E A R VT D GRK+
Sbjct: 305 TLQKREEELRELRHASRLSKKVTIDFAGRKI 335
>sp|O13855|YEX1_SCHPO Uncharacterized protein C1A6.01c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC1A6.01c PE=1 SV=3
Length = 455
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 45/149 (30%)
Query: 188 CSCQARQHRL---ISNCLSCGKIVCEQEGEGPCQFCGALVLKEGSTYAGLEE-------- 236
C+CQ R+H L NCL+CGKI+C EG GPC FC V+ + ++E
Sbjct: 195 CNCQGRKHPLNEAAPNCLNCGKIICIVEGIGPCTFCDNPVISKAQQLELIQELKHEGSRL 254
Query: 237 -----------------GFAPLSDA-------------EAAAEAYTKR--LVDYDRNAAA 264
F L ++ + A EA ++ L+++DR +A
Sbjct: 255 KQAANQKRKSKTVSSKNNFQRLQNSSLHSIFLDPKQLEQKAQEAEERKNVLLNFDRTSAQ 314
Query: 265 RTTVIDDQSDY--YEIEGNSWLSKEEKEL 291
RT +ID+ +D+ + ++W S EK L
Sbjct: 315 RTRIIDEAADFDPTSLASDTWASPAEKAL 343
>sp|P36119|YK03_YEAST Uncharacterized protein YKR023W OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YKR023W PE=1 SV=1
Length = 530
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 154 NRGNQSNNRKKKA-----GKVISLAEAAKGSIVFQ-----QGKPCSCQARQHRLIS---N 200
N+ QSN K+K GK+ SL E + + + K C+CQ +H + N
Sbjct: 132 NQSTQSNPIKEKKEHRSKGKLQSLQEIDEAIKMLELRDSGSSKNCNCQGTRHPVFDIAPN 191
Query: 201 CLSCGKIVCEQEG--EGPCQFCGALVLKEG 228
CL CGK+VC EG +G C C ++ +
Sbjct: 192 CLHCGKVVCVIEGLNKGKCGHCHEQLISDN 221
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 247 AAEAYTKRLVDYDRNAAARTTVIDDQSDY-YEIEGNSWLSKEEKELIKKKQ-------EE 298
AA+ RL+ + +A RT +ID+ SD+ E W S E+ L KKQ E+
Sbjct: 327 AAQERLDRLLYFQDTSAERTKIIDNASDFDMNQEVGLWGSARERALALKKQQRNLRKWEK 386
Query: 299 VAEAEQAKRNKVVVTFDL 316
V + +R K VV+ ++
Sbjct: 387 VEKERNGRREKYVVSMNI 404
>sp|C3KDX4|SYI_PSEFS Isoleucine--tRNA ligase OS=Pseudomonas fluorescens (strain SBW25)
GN=ileS PE=3 SV=1
Length = 943
Score = 35.0 bits (79), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 10/57 (17%)
Query: 158 QSNNRKKKAGKVISLAEAAKGSIVFQQGKPCSCQARQHRLISNCLSCGKIVCEQEGE 214
++ N K +AG++ +LAE KG VF+ KP ++ C CG + E E E
Sbjct: 152 KTMNFKNEAGEIRALAEIVKGGFVFKGLKP----------VNWCFDCGSALAEAEVE 198
>sp|Q3K6L5|SYI_PSEPF Isoleucine--tRNA ligase OS=Pseudomonas fluorescens (strain Pf0-1)
GN=ileS PE=3 SV=1
Length = 943
Score = 35.0 bits (79), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 10/57 (17%)
Query: 158 QSNNRKKKAGKVISLAEAAKGSIVFQQGKPCSCQARQHRLISNCLSCGKIVCEQEGE 214
++ N K +AG++ +LAE KG VF+ KP ++ C CG + E E E
Sbjct: 152 KTMNFKNEAGEIRALAEIVKGGFVFKGLKP----------VNWCFDCGSALAEAEVE 198
>sp|P18330|SYI1_PSEFL Isoleucine--tRNA ligase 1 OS=Pseudomonas fluorescens GN=ileS1 PE=3
SV=2
Length = 943
Score = 35.0 bits (79), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 10/57 (17%)
Query: 158 QSNNRKKKAGKVISLAEAAKGSIVFQQGKPCSCQARQHRLISNCLSCGKIVCEQEGE 214
++ N K +AG++ +LAE KG VF+ KP ++ C CG + E E E
Sbjct: 152 KTMNFKNEAGEIRALAEIVKGGFVFKGLKP----------VNWCFDCGSALAEAEVE 198
>sp|Q4K5U4|SYI_PSEF5 Isoleucine--tRNA ligase OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=ileS PE=3 SV=1
Length = 943
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 17/64 (26%)
Query: 151 RTMNRGNQSNNRKKKAGKVISLAEAAKGSIVFQQGKPCSCQARQHRLISNCLSCGKIVCE 210
+TMN N+ AG++ +LAE KG VF+ KP ++ C CG + E
Sbjct: 152 KTMNFANE-------AGEIRALAEMVKGGFVFKGLKP----------VNWCFDCGSALAE 194
Query: 211 QEGE 214
E E
Sbjct: 195 AEVE 198
>sp|B1KHA6|ADD_SHEWM Adenosine deaminase OS=Shewanella woodyi (strain ATCC 51908 / MS32)
GN=add PE=3 SV=1
Length = 331
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 276 YEIEGNSWLSKEEKELIKKKQEEVAEAEQAKRNKVVVTFDLVGRKVSTFCR 326
Y+I+GN LS + + K +V +A A NK VV FDL G ++ FC
Sbjct: 129 YDIKGNYILSIL-RTMDKGNINDVIDAGAAYLNKGVVAFDLAGAELPGFCH 178
>sp|Q8Y776|MURB_LISMO UDP-N-acetylenolpyruvoylglucosamine reductase OS=Listeria
monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
GN=murB PE=1 SV=1
Length = 298
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Query: 216 PCQFCGALVLKEGSTYAGLEEGFAPLSDAEAAAEAYT-----KRLVDYDRNAAARTTVID 270
P GAL + G+ Y G +SD AA T K+L + AA R + I
Sbjct: 123 PGSIGGALHMNAGA-YGG------EISDVLEAATVLTQTGELKKLKRSELKAAYRFSTIA 175
Query: 271 DQSDYYEIEGNSWLSKEEKELIKKKQEEVAEAEQAKR 307
++ +Y ++ L+ EEK LI+ K +E+ A +AK+
Sbjct: 176 EK-NYIVLDATFSLALEEKNLIQAKMDELTAAREAKQ 211
>sp|Q71ZQ0|MURB_LISMF UDP-N-acetylenolpyruvoylglucosamine reductase OS=Listeria
monocytogenes serotype 4b (strain F2365) GN=murB PE=3
SV=1
Length = 298
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Query: 216 PCQFCGALVLKEGSTYAGLEEGFAPLSDAEAAAEAYT-----KRLVDYDRNAAARTTVID 270
P GAL + G+ Y G +SD AA T K+L + AA R + I
Sbjct: 123 PGSIGGALHMNAGA-YGG------EISDVLEAATVLTQTGELKKLKRSELKAAYRFSTIA 175
Query: 271 DQSDYYEIEGNSWLSKEEKELIKKKQEEVAEAEQAKR 307
++ +Y ++ L+ EEK LI+ K +E+ A +AK+
Sbjct: 176 EK-NYIVLDATFSLALEEKNLIQAKMDELTAAREAKQ 211
>sp|C1L2X6|MURB_LISMC UDP-N-acetylenolpyruvoylglucosamine reductase OS=Listeria
monocytogenes serotype 4b (strain CLIP80459) GN=murB
PE=3 SV=1
Length = 298
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Query: 216 PCQFCGALVLKEGSTYAGLEEGFAPLSDAEAAAEAYT-----KRLVDYDRNAAARTTVID 270
P GAL + G+ Y G +SD AA T K+L + AA R + I
Sbjct: 123 PGSIGGALHMNAGA-YGG------EISDVLEAATVLTQTGELKKLKRSELKAAYRFSTIA 175
Query: 271 DQSDYYEIEGNSWLSKEEKELIKKKQEEVAEAEQAKR 307
++ +Y ++ L+ EEK LI+ K +E+ A +AK+
Sbjct: 176 EK-NYIVLDATFSLALEEKNLIQAKMDELTAAREAKQ 211
>sp|B8DE89|MURB_LISMH UDP-N-acetylenolpyruvoylglucosamine reductase OS=Listeria
monocytogenes serotype 4a (strain HCC23) GN=murB PE=3
SV=1
Length = 298
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Query: 216 PCQFCGALVLKEGSTYAGLEEGFAPLSDAEAAAEAYT-----KRLVDYDRNAAARTTVID 270
P GAL + G+ Y G +SD AA T K+L + AA R + I
Sbjct: 123 PGSIGGALHMNAGA-YGG------EISDVLEAATVLTQTGELKKLKRSELKAAYRFSTIA 175
Query: 271 DQSDYYEIEGNSWLSKEEKELIKKKQEEVAEAEQAKR 307
++ +Y ++ L+ EEK LI+ K +E+ A +AK+
Sbjct: 176 EK-NYIVLDATFSLALEEKNLIQAKMDELTAAREAKQ 211
>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31
PE=3 SV=1
Length = 149
Score = 32.3 bits (72), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 17/89 (19%)
Query: 16 CKRIESLDLDGEVISGLVSYCEF------AQP-LDAKEYLDNIIGQEVGKSVIEEYLRRR 68
CK + ++ EV S + S+ +F A P + AKE + +E G V E LR
Sbjct: 65 CKVLVTMQAQKEVPSDMQSFEKFMIQSVLASPGVTAKEVTREMFSKESGHVVEETKLR-- 122
Query: 69 GLTDICSSTTNVPTSKLQAYVKPRSDEGL 97
+T +CS+TTN+ +S PR+ G
Sbjct: 123 -VTYVCSTTTNITSS-------PRTRRGF 143
>sp|C0ZCE2|TRPD_BREBN Anthranilate phosphoribosyltransferase OS=Brevibacillus brevis
(strain 47 / JCM 6285 / NBRC 100599) GN=trpD PE=3 SV=1
Length = 341
Score = 32.0 bits (71), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 112 TGTGHQAELKKVMVPSYQVEPKKDAVSSHNENLAESSESRTMNRGNQSNNRKKKAGKVIS 171
TGT H AEL+ + +Y++EP++ + H ++ RG +N K V S
Sbjct: 230 TGTSHIAELRDGRILTYEIEPEQFGLRRHEKDAL---------RGGDANENAKIIHDVFS 280
Query: 172 LAEAAKGSIVF 182
A A IV
Sbjct: 281 GARGAARDIVL 291
>sp|B2G6W3|DNAK_LACRJ Chaperone protein DnaK OS=Lactobacillus reuteri (strain JCM 1112)
GN=dnaK PE=3 SV=1
Length = 621
Score = 32.0 bits (71), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 241 LSDAEAAAEAY--TKRLVDYDRNAAARTTVIDDQSDYYE----IEGNSWLSKEEKELIKK 294
L+D AA K D D+N + +DQ + + I+ NS LS EE E +KK
Sbjct: 432 LTDIPAAPRGVPQIKVTFDIDKNGIVNVSA-EDQGTHKKQNITIKSNSGLSDEEIERMKK 490
Query: 295 KQEEVAEAEQAKRNKV 310
EE AEA++ K+ +V
Sbjct: 491 DAEEHAEADKKKKEEV 506
>sp|A5VJE7|DNAK_LACRD Chaperone protein DnaK OS=Lactobacillus reuteri (strain DSM 20016)
GN=dnaK PE=3 SV=1
Length = 621
Score = 32.0 bits (71), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 241 LSDAEAAAEAY--TKRLVDYDRNAAARTTVIDDQSDYYE----IEGNSWLSKEEKELIKK 294
L+D AA K D D+N + +DQ + + I+ NS LS EE E +KK
Sbjct: 432 LTDIPAAPRGVPQIKVTFDIDKNGIVNVSA-EDQGTHKKQNITIKSNSGLSDEEIERMKK 490
Query: 295 KQEEVAEAEQAKRNKV 310
EE AEA++ K+ +V
Sbjct: 491 DAEEHAEADKKKKEEV 506
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,804,482
Number of Sequences: 539616
Number of extensions: 5343727
Number of successful extensions: 18362
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 18301
Number of HSP's gapped (non-prelim): 99
length of query: 340
length of database: 191,569,459
effective HSP length: 118
effective length of query: 222
effective length of database: 127,894,771
effective search space: 28392639162
effective search space used: 28392639162
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)