Query 019483
Match_columns 340
No_of_seqs 158 out of 227
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 16:47:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019483.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019483hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x4q_A U4/U6 small nuclear rib 91.2 0.25 8.6E-06 39.6 4.8 61 5-72 19-81 (92)
2 1j2m_A CPI-17, 17-kDa PKC-pote 85.9 0.69 2.4E-05 38.0 3.9 61 4-70 31-96 (99)
3 1mp1_A Ser/Arg-related nuclear 79.7 2.4 8.2E-05 35.2 4.9 62 4-71 25-89 (111)
4 2kdx_A HYPA, hydrogenase/ureas 77.5 1.1 3.6E-05 36.7 2.1 30 195-224 70-100 (119)
5 1lko_A Rubrerythrin all-iron(I 74.7 1.3 4.4E-05 39.1 2.1 26 198-223 155-180 (191)
6 3v53_A RNA-binding protein 25; 70.8 6.5 0.00022 33.0 5.4 56 6-68 49-106 (119)
7 2lcq_A Putative toxin VAPC6; P 70.6 1.6 5.3E-05 37.2 1.6 27 199-225 133-159 (165)
8 3a43_A HYPD, hydrogenase nicke 70.3 2 6.9E-05 36.4 2.2 30 195-224 67-117 (139)
9 1yuz_A Nigerythrin; rubrythrin 67.5 2.3 7.9E-05 38.0 2.1 26 197-223 170-195 (202)
10 3pwf_A Rubrerythrin; non heme 62.0 3.6 0.00012 35.9 2.2 27 196-223 136-162 (170)
11 3h0g_L DNA-directed RNA polyme 60.5 4.5 0.00015 30.6 2.2 35 193-227 16-51 (63)
12 4ayb_P DNA-directed RNA polyme 59.8 3.3 0.00011 29.9 1.3 27 200-226 5-35 (48)
13 2fhz_A Colicin-E5 immunity pro 59.2 2.3 8E-05 35.3 0.5 26 263-288 6-33 (109)
14 1twf_L ABC10-alpha, DNA-direct 52.0 7.4 0.00025 29.7 2.2 31 196-226 26-57 (70)
15 1l8d_A DNA double-strand break 49.8 4.2 0.00015 32.3 0.5 13 214-226 47-59 (112)
16 1vfy_A Phosphatidylinositol-3- 45.6 5.9 0.0002 29.7 0.7 13 199-211 28-40 (73)
17 2yw8_A RUN and FYVE domain-con 43.3 6.6 0.00023 30.1 0.7 13 199-211 36-48 (82)
18 1hlv_A CENP-B, major centromer 38.2 67 0.0023 25.1 6.0 50 7-68 76-130 (131)
19 1x4u_A Zinc finger, FYVE domai 37.9 8.7 0.0003 29.5 0.6 12 199-210 31-42 (84)
20 1z2q_A LM5-1; membrane protein 37.4 9.1 0.00031 29.4 0.6 13 199-211 38-50 (84)
21 1wfk_A Zinc finger, FYVE domai 37.3 9.7 0.00033 29.8 0.8 25 187-211 11-38 (88)
22 3t7l_A Zinc finger FYVE domain 36.3 9.9 0.00034 29.7 0.7 13 199-211 37-49 (90)
23 1joc_A EEA1, early endosomal a 33.7 11 0.00038 31.2 0.6 13 199-211 86-98 (125)
24 1m2k_A Silent information regu 33.6 17 0.00059 32.9 2.0 39 186-226 111-154 (249)
25 2yqp_A Probable ATP-dependent 32.5 19 0.00066 27.0 1.7 27 192-218 11-42 (60)
26 3lpe_B DNA-directed RNA polyme 31.1 20 0.00069 26.5 1.6 19 200-222 3-21 (59)
27 2xzm_6 RPS27E; ribosome, trans 30.7 16 0.00056 28.9 1.1 17 198-214 51-67 (81)
28 1vzi_A Desulfoferrodoxin; ferr 29.7 15 0.00052 30.6 0.8 28 198-225 7-35 (126)
29 1mzb_A Ferric uptake regulatio 29.7 15 0.00052 29.9 0.8 20 190-210 84-103 (136)
30 3u5c_b RP61, YS20, 40S ribosom 29.1 15 0.00053 29.1 0.7 16 199-214 54-69 (82)
31 1y02_A CARP2, FYVE-ring finger 28.4 16 0.00054 30.5 0.7 13 199-211 36-48 (120)
32 1dvp_A HRS, hepatocyte growth 27.9 16 0.00054 32.4 0.6 12 199-210 178-189 (220)
33 3iz6_X 40S ribosomal protein S 27.8 19 0.00064 28.8 1.0 16 199-214 56-71 (86)
34 3p8b_A DNA-directed RNA polyme 27.8 27 0.00093 27.6 1.9 25 199-227 24-48 (81)
35 2gmg_A Hypothetical protein PF 27.5 27 0.00092 28.8 1.9 28 199-226 68-96 (105)
36 1dxg_A Desulforedoxin; non-hem 27.2 21 0.00072 23.5 1.0 26 199-224 7-33 (36)
37 2kre_A Ubiquitin conjugation f 27.2 29 0.00098 27.3 2.0 28 199-226 42-75 (100)
38 3zyq_A Hepatocyte growth facto 26.2 18 0.0006 32.5 0.6 13 199-211 181-193 (226)
39 1qxf_A GR2, 30S ribosomal prot 26.1 24 0.00084 26.9 1.3 17 198-214 26-42 (66)
40 1q1a_A HST2 protein; ternary c 25.9 17 0.00059 33.7 0.6 39 186-226 126-175 (289)
41 1yc5_A NAD-dependent deacetyla 25.6 22 0.00074 32.2 1.2 39 186-226 111-157 (246)
42 1oqe_K Tumor necrosis factor r 25.4 18 0.00062 23.8 0.4 13 195-207 11-23 (31)
43 2ds5_A CLPX, ATP-dependent CLP 25.0 22 0.00074 25.6 0.8 9 215-223 12-20 (51)
44 3na7_A HP0958; flagellar bioge 24.8 20 0.00067 32.6 0.7 43 169-211 177-235 (256)
45 3c5k_A HD6, histone deacetylas 24.4 25 0.00086 28.6 1.2 10 201-210 39-48 (109)
46 2xig_A Ferric uptake regulatio 23.8 22 0.00076 29.6 0.8 14 197-210 98-111 (150)
47 3eyy_A Putative iron uptake re 23.7 22 0.00076 29.4 0.8 14 197-210 89-102 (145)
48 2fe3_A Peroxide operon regulat 23.6 23 0.00077 29.2 0.8 13 198-210 93-105 (145)
49 4ets_A Ferric uptake regulatio 23.2 23 0.00079 30.0 0.8 13 198-210 107-119 (162)
50 2c2l_A CHIP, carboxy terminus 23.1 30 0.001 30.3 1.6 28 199-226 221-255 (281)
51 3j20_W 30S ribosomal protein S 22.9 31 0.0011 26.1 1.3 17 198-214 34-50 (63)
52 1g25_A CDK-activating kinase a 22.8 34 0.0012 23.8 1.5 26 202-227 24-56 (65)
53 1vq8_U 50S ribosomal protein L 22.7 30 0.001 26.2 1.2 12 215-226 4-15 (66)
54 1ovx_A ATP-dependent CLP prote 21.9 26 0.0009 26.7 0.8 9 215-223 19-27 (67)
55 1t1h_A Gspef-atpub14, armadill 21.7 42 0.0014 24.1 1.9 26 201-226 23-55 (78)
56 3j21_V 50S ribosomal protein L 21.4 30 0.001 26.2 1.0 12 215-226 5-16 (66)
57 1ma3_A SIR2-AF2, transcription 21.1 39 0.0013 30.7 1.9 38 186-225 113-159 (253)
58 3irb_A Uncharacterized protein 21.0 30 0.001 29.2 1.0 24 199-224 48-71 (145)
59 2w57_A Ferric uptake regulatio 20.9 28 0.00094 29.0 0.8 20 190-210 83-102 (150)
60 6rxn_A Rubredoxin; electron tr 20.6 48 0.0017 23.3 1.9 24 200-223 6-39 (46)
61 1q14_A HST2 protein; histone d 20.4 33 0.0011 33.3 1.3 38 186-225 134-182 (361)
62 2p0t_A UPF0307 protein pspto_4 20.3 1.3E+02 0.0043 26.7 4.9 45 8-52 31-79 (176)
63 2ayj_A 50S ribosomal protein L 20.3 29 0.00097 25.8 0.6 16 190-205 25-40 (56)
64 2kr4_A Ubiquitin conjugation f 20.2 34 0.0012 25.8 1.1 28 199-226 27-60 (85)
65 1vq8_Z 50S ribosomal protein L 20.1 35 0.0012 26.7 1.1 25 200-224 29-55 (83)
No 1
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.21 E-value=0.25 Score=39.63 Aligned_cols=61 Identities=11% Similarity=0.223 Sum_probs=48.2
Q ss_pred HhhHHHHHHHHHhhcccCCCc-HHHHHHhhcccc-cCCchHHHHHHHHhhCCcchHHHHHHHHHHhcccc
Q 019483 5 GEWLEKALVDLCKRIESLDLD-GEVISGLVSYCE-FAQPLDAKEYLDNIIGQEVGKSVIEEYLRRRGLTD 72 (340)
Q Consensus 5 ~~w~~~~L~~~~~~~~~L~~~-~d~~~~ils~~e-l~~~~d~~eY~~nLLG~e~~~~Fi~e~~~r~~~~~ 72 (340)
-.|+.+.+.++ |++. +-++.||+..++ -.+|.++.+-+..+|+.+ ...|+.+|-++.-+..
T Consensus 19 kpWI~kkv~e~------LG~eD~~lVd~i~~~l~~~~dpk~l~~~L~~fLd~~-a~~Fv~eLW~lL~~aq 81 (92)
T 1x4q_A 19 KPWIEKTVKRV------LGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDS-TLRFVDKLFEAVEEGR 81 (92)
T ss_dssp HHHHHHHHHHH------HSSCCHHHHHHHHHHHHTTCCHHHHHHHHTTTTGGG-THHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHH------cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHH
Confidence 46999999999 9996 666788888654 356777888888888766 7799999998886644
No 2
>1j2m_A CPI-17, 17-kDa PKC-potentiated inhibitory protein of PP1; helix bundle, protein binding; NMR {Sus scrofa} SCOP: a.165.1.1 PDB: 2rlt_A* 1j2n_A 1k5o_A
Probab=85.85 E-value=0.69 Score=37.99 Aligned_cols=61 Identities=13% Similarity=0.345 Sum_probs=42.1
Q ss_pred hHhhHHHHHHHHHhhccc-C--CCcHHHHHHhhcccccCCchHHHHHHHHhh--CCcchHHHHHHHHHHhcc
Q 019483 4 AGEWLEKALVDLCKRIES-L--DLDGEVISGLVSYCEFAQPLDAKEYLDNII--GQEVGKSVIEEYLRRRGL 70 (340)
Q Consensus 4 ~~~w~~~~L~~~~~~~~~-L--~~~~d~~~~ils~~el~~~~d~~eY~~nLL--G~e~~~~Fi~e~~~r~~~ 70 (340)
.++|+.++|.++-.--+. + ++| |..||+ |++.++=..|+..|| ..-....||.+||.|...
T Consensus 31 ~E~WI~~qL~eLy~~~e~e~p~eID---iDeLLD---l~sdeeR~~~LqelL~~C~~ptE~FI~eLL~rlkg 96 (99)
T 1j2m_A 31 VEKWIDGRLEELYRGREADMPDEVN---IDELLE---LESEEERSRKIQGLLKSCTNPTENFVQELLVKLRG 96 (99)
T ss_dssp HHHHHHHHHHHSCTTSSCSCCSSCC---SHHHHC---CTTTTHHHHHHHHHHHTTSCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhcCccccCCcccC---HHHHhc---CCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 478999999999221111 1 222 345666 678888899999999 334355999999998653
No 3
>1mp1_A Ser/Arg-related nuclear matrix protein; four helix bundle, RNA binding protein; NMR {Homo sapiens} SCOP: a.188.1.1
Probab=79.66 E-value=2.4 Score=35.21 Aligned_cols=62 Identities=13% Similarity=0.189 Sum_probs=46.4
Q ss_pred hHhhHHHHHHHHHhhcccCCCc-HHHHHHhhccccc--CCchHHHHHHHHhhCCcchHHHHHHHHHHhccc
Q 019483 4 AGEWLEKALVDLCKRIESLDLD-GEVISGLVSYCEF--AQPLDAKEYLDNIIGQEVGKSVIEEYLRRRGLT 71 (340)
Q Consensus 4 ~~~w~~~~L~~~~~~~~~L~~~-~d~~~~ils~~el--~~~~d~~eY~~nLLG~e~~~~Fi~e~~~r~~~~ 71 (340)
---|+.+.+.++ ||++ +-++.|+++..+- -+|..+..-+...|+.+++..|+.+|-++.-+.
T Consensus 25 ikpWI~kki~e~------LG~EDdvlid~i~~~L~~~~~dpk~lqi~L~gFL~~e~a~~Fv~eLW~LLi~a 89 (111)
T 1mp1_A 25 IKPWITKRVTEI------LGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSA 89 (111)
T ss_dssp GHHHHHHHHHHH------HSSCCSHHHHHHHHHTTSSSCCHHHHHHHHTTTSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------cCCccHHHHHHHHHHhhccCCCHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 357999999999 9996 5556788887541 245666777777777544778999999998775
No 4
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=77.53 E-value=1.1 Score=36.72 Aligned_cols=30 Identities=13% Similarity=0.371 Sum_probs=24.5
Q ss_pred CccccccccccceeeecccCc-ccCCCCccc
Q 019483 195 HRLISNCLSCGKIVCEQEGEG-PCQFCGALV 224 (340)
Q Consensus 195 H~Li~NCL~CGKIiCeqEG~g-PC~FCG~~v 224 (340)
-|..--|.+||.++=..+-.. +|+.||.+.
T Consensus 70 ~p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 70 EKVELECKDCSHVFKPNALDYGVCEKCHSKN 100 (119)
T ss_dssp ECCEEECSSSSCEECSCCSTTCCCSSSSSCC
T ss_pred ccceEEcCCCCCEEeCCCCCCCcCccccCCC
Confidence 355679999999987666667 999999984
No 5
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=74.74 E-value=1.3 Score=39.14 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=19.5
Q ss_pred ccccccccceeeecccCcccCCCCcc
Q 019483 198 ISNCLSCGKIVCEQEGEGPCQFCGAL 223 (340)
Q Consensus 198 i~NCL~CGKIiCeqEG~gPC~FCG~~ 223 (340)
.--|.+||-|+=-.+-...|+.||.+
T Consensus 155 ~~~C~~CG~~~~g~~~p~~CP~C~~~ 180 (191)
T 1lko_A 155 KWRCRNCGYVHEGTGAPELCPACAHP 180 (191)
T ss_dssp EEEETTTCCEEEEEECCSBCTTTCCB
T ss_pred eEEECCCCCEeeCCCCCCCCCCCcCC
Confidence 45799999996422334689999995
No 6
>3v53_A RNA-binding protein 25; PWI, RNA-binding domain; 2.90A {Homo sapiens}
Probab=70.82 E-value=6.5 Score=33.04 Aligned_cols=56 Identities=13% Similarity=0.305 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHhhcccCCCc-HHHHHHhhcccc-cCCchHHHHHHHHhhCCcchHHHHHHHHHHh
Q 019483 6 EWLEKALVDLCKRIESLDLD-GEVISGLVSYCE-FAQPLDAKEYLDNIIGQEVGKSVIEEYLRRR 68 (340)
Q Consensus 6 ~w~~~~L~~~~~~~~~L~~~-~d~~~~ils~~e-l~~~~d~~eY~~nLLG~e~~~~Fi~e~~~r~ 68 (340)
-|+.+...++ ||+. +.++.||++-++ =.+|.++.+=+.-.|..+ +..|+.++=++.
T Consensus 49 PWI~kKI~E~------LG~eEd~LVdfI~~~L~~~~~pk~l~~~L~~~LDee-A~~FV~kLWrlL 106 (119)
T 3v53_A 49 PWINKKIIEY------IGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLDEE-AEVFIVKMWRLL 106 (119)
T ss_dssp HHHHHHHHHH------TC---CHHHHHHHHHHHTTCCHHHHHHHHHHHHTTH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHH------hCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh-HHHHHHHHHHHH
Confidence 3555555555 9996 677788888654 357777877778888776 778999886653
No 7
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=70.63 E-value=1.6 Score=37.18 Aligned_cols=27 Identities=30% Similarity=0.678 Sum_probs=19.5
Q ss_pred cccccccceeeecccCcccCCCCcccc
Q 019483 199 SNCLSCGKIVCEQEGEGPCQFCGALVL 225 (340)
Q Consensus 199 ~NCL~CGKIiCeqEG~gPC~FCG~~v~ 225 (340)
--|..||+++=.......|+-||+++.
T Consensus 133 y~C~~Cg~~~~~~~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 133 YVCIGCGRKFSTLPPGGVCPDCGSKVK 159 (165)
T ss_dssp EEESSSCCEESSCCGGGBCTTTCCBEE
T ss_pred EECCCCCCcccCCCCCCcCCCCCCcce
Confidence 579999998633322357999999863
No 8
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=70.25 E-value=2 Score=36.35 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=24.3
Q ss_pred Cccccccccccceeeecc-----------c----------CcccCCCCccc
Q 019483 195 HRLISNCLSCGKIVCEQE-----------G----------EGPCQFCGALV 224 (340)
Q Consensus 195 H~Li~NCL~CGKIiCeqE-----------G----------~gPC~FCG~~v 224 (340)
-|..--|.+||.++=..+ - ..+|+.||.+-
T Consensus 67 ~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~ 117 (139)
T 3a43_A 67 EEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHD 117 (139)
T ss_dssp ECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCC
T ss_pred cCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCc
Confidence 355678999999987666 5 68899999974
No 9
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=67.55 E-value=2.3 Score=38.02 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=19.3
Q ss_pred cccccccccceeeecccCcccCCCCcc
Q 019483 197 LISNCLSCGKIVCEQEGEGPCQFCGAL 223 (340)
Q Consensus 197 Li~NCL~CGKIiCeqEG~gPC~FCG~~ 223 (340)
-+--|.+||-|+= -+-...|+.||.+
T Consensus 170 ~~~~C~~CG~i~~-g~~p~~CP~C~~~ 195 (202)
T 1yuz_A 170 KFHLCPICGYIHK-GEDFEKCPICFRP 195 (202)
T ss_dssp CEEECSSSCCEEE-SSCCSBCTTTCCB
T ss_pred cEEEECCCCCEEc-CcCCCCCCCCCCC
Confidence 3568999999963 2334679999985
No 10
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=61.98 E-value=3.6 Score=35.91 Aligned_cols=27 Identities=30% Similarity=0.643 Sum_probs=21.0
Q ss_pred ccccccccccceeeecccCcccCCCCcc
Q 019483 196 RLISNCLSCGKIVCEQEGEGPCQFCGAL 223 (340)
Q Consensus 196 ~Li~NCL~CGKIiCeqEG~gPC~FCG~~ 223 (340)
+.+--|.+||-|+= .+-...|+-||.+
T Consensus 136 ~~~~~C~~CG~i~~-~~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 136 KKVYICPICGYTAV-DEAPEYCPVCGAP 162 (170)
T ss_dssp SCEEECTTTCCEEE-SCCCSBCTTTCCB
T ss_pred CCeeEeCCCCCeeC-CCCCCCCCCCCCC
Confidence 34567999999985 4456799999985
No 11
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=60.46 E-value=4.5 Score=30.57 Aligned_cols=35 Identities=29% Similarity=0.476 Sum_probs=25.9
Q ss_pred ccCccccccccccceeeeccc-CcccCCCCcccccC
Q 019483 193 RQHRLISNCLSCGKIVCEQEG-EGPCQFCGALVLKE 227 (340)
Q Consensus 193 ~~H~Li~NCL~CGKIiCeqEG-~gPC~FCG~~v~~~ 227 (340)
+..++.-.|..||..+-..-+ .--|..||..|+..
T Consensus 16 ~~~~v~Y~C~~Cg~~~~l~~~~~iRC~~CG~RILyK 51 (63)
T 3h0g_L 16 RPATMIYLCADCGARNTIQAKEVIRCRECGHRVMYK 51 (63)
T ss_dssp ---CCCCBCSSSCCBCCCCSSSCCCCSSSCCCCCBC
T ss_pred CCCCeEEECCCCCCeeecCCCCceECCCCCcEEEEE
Confidence 334677899999999865544 47899999998754
No 12
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=59.80 E-value=3.3 Score=29.90 Aligned_cols=27 Identities=22% Similarity=0.577 Sum_probs=21.5
Q ss_pred ccccccceeeeccc----CcccCCCCccccc
Q 019483 200 NCLSCGKIVCEQEG----EGPCQFCGALVLK 226 (340)
Q Consensus 200 NCL~CGKIiCeqEG----~gPC~FCG~~v~~ 226 (340)
-||.||+-+=..|= .-.|++||-.|+.
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGyrii~ 35 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGYKIIF 35 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEE
T ss_pred EeeccCCCccHHHHhhCCCcccCccCcEEEE
Confidence 69999998865554 3679999998875
No 13
>2fhz_A Colicin-E5 immunity protein; protein-protein complex, inhibition of ribonuclease, immune system, hydrolase; 1.15A {Escherichia coli} SCOP: d.311.1.1 PDB: 2dfx_I
Probab=59.20 E-value=2.3 Score=35.27 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=22.1
Q ss_pred cccccccccccccccccCC--ccCCHHH
Q 019483 263 AARTTVIDDQSDYYEIEGN--SWLSKEE 288 (340)
Q Consensus 263 A~RTkVIDDqsDyf~~~~n--~WlS~~E 288 (340)
..|++++|...|||+.++| ||||+.-
T Consensus 6 ~d~~~~Yds~~dFF~L~Gn~~MkLs~kA 33 (109)
T 2fhz_A 6 FEHTVLYDSGDAFFELKGNASMKLSPKA 33 (109)
T ss_dssp SCTTCCBCCHHHHHHTTCTTTCCBCHHH
T ss_pred cceeeeecchhHHheeCCceEEEECcHH
Confidence 5688999999999997654 9999964
No 14
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=52.02 E-value=7.4 Score=29.72 Aligned_cols=31 Identities=23% Similarity=0.464 Sum_probs=23.2
Q ss_pred ccccccccccceeeecccC-cccCCCCccccc
Q 019483 196 RLISNCLSCGKIVCEQEGE-GPCQFCGALVLK 226 (340)
Q Consensus 196 ~Li~NCL~CGKIiCeqEG~-gPC~FCG~~v~~ 226 (340)
++.--|..||..+=...+. -.|..||..|+-
T Consensus 26 ~v~Y~C~~CG~~~e~~~~d~irCp~CG~RILy 57 (70)
T 1twf_L 26 TLKYICAECSSKLSLSRTDAVRCKDCGHRILL 57 (70)
T ss_dssp CCCEECSSSCCEECCCTTSTTCCSSSCCCCCB
T ss_pred eEEEECCCCCCcceeCCCCCccCCCCCceEeE
Confidence 4556899999987666554 579999996553
No 15
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=49.77 E-value=4.2 Score=32.25 Aligned_cols=13 Identities=31% Similarity=0.879 Sum_probs=11.0
Q ss_pred CcccCCCCccccc
Q 019483 214 EGPCQFCGALVLK 226 (340)
Q Consensus 214 ~gPC~FCG~~v~~ 226 (340)
.+||++||.++..
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 6799999998764
No 16
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=45.56 E-value=5.9 Score=29.72 Aligned_cols=13 Identities=38% Similarity=1.219 Sum_probs=11.4
Q ss_pred cccccccceeeec
Q 019483 199 SNCLSCGKIVCEQ 211 (340)
Q Consensus 199 ~NCL~CGKIiCeq 211 (340)
-+|-.||+|+|..
T Consensus 28 HHCR~CG~v~C~~ 40 (73)
T 1vfy_A 28 HHCRSCGGVFCQE 40 (73)
T ss_dssp EECTTTCCEECGG
T ss_pred ccCCCCCEEEccc
Confidence 5899999999975
No 17
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=43.30 E-value=6.6 Score=30.07 Aligned_cols=13 Identities=38% Similarity=1.188 Sum_probs=11.3
Q ss_pred cccccccceeeec
Q 019483 199 SNCLSCGKIVCEQ 211 (340)
Q Consensus 199 ~NCL~CGKIiCeq 211 (340)
-+|-.||+|+|..
T Consensus 36 HHCR~CG~v~C~~ 48 (82)
T 2yw8_A 36 HHCRNCGHIFCNT 48 (82)
T ss_dssp EECTTTCCEECSG
T ss_pred ccCCCCCCEEChH
Confidence 5899999999973
No 18
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=38.23 E-value=67 Score=25.05 Aligned_cols=50 Identities=20% Similarity=0.389 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhhccc--CCCcHHHHHHhhcccccCCchHHHHHHHHhhCCc---chHHHHHHHHHHh
Q 019483 7 WLEKALVDLCKRIES--LDLDGEVISGLVSYCEFAQPLDAKEYLDNIIGQE---VGKSVIEEYLRRR 68 (340)
Q Consensus 7 w~~~~L~~~~~~~~~--L~~~~d~~~~ils~~el~~~~d~~eY~~nLLG~e---~~~~Fi~e~~~r~ 68 (340)
-++++|++|..++.. +++..++|..... +|...+|.+ .+...+..|+.|.
T Consensus 76 ~~E~~L~~Wi~~~~~~g~pvs~~~I~~kA~------------~i~~~~g~~~f~~S~gWl~~F~~Rh 130 (131)
T 1hlv_A 76 KLEGLLIAWFQQIRAAGLPVKGIILKEKAL------------RIAEELGMDDFTASNGWLDRFRRRR 130 (131)
T ss_dssp HHHHHHHHHHHHHGGGTCCCCHHHHHHHHH------------HHHHHHTCTTCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHH------------HHHHHhCCCCCCCCHHHHHHHHHhc
Confidence 478888999877554 7788888775443 233334543 3447777777764
No 19
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.89 E-value=8.7 Score=29.46 Aligned_cols=12 Identities=33% Similarity=1.107 Sum_probs=10.8
Q ss_pred cccccccceeee
Q 019483 199 SNCLSCGKIVCE 210 (340)
Q Consensus 199 ~NCL~CGKIiCe 210 (340)
-.|-.||+|+|.
T Consensus 31 HHCR~CG~vfC~ 42 (84)
T 1x4u_A 31 RSCSNCGNSFCS 42 (84)
T ss_dssp EECSSSCCEECT
T ss_pred hhhcCCCcEECh
Confidence 589999999987
No 20
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=37.40 E-value=9.1 Score=29.43 Aligned_cols=13 Identities=31% Similarity=1.119 Sum_probs=11.3
Q ss_pred cccccccceeeec
Q 019483 199 SNCLSCGKIVCEQ 211 (340)
Q Consensus 199 ~NCL~CGKIiCeq 211 (340)
-+|-.||+|+|..
T Consensus 38 HHCR~CG~v~C~~ 50 (84)
T 1z2q_A 38 HHCRNCGYVLCGD 50 (84)
T ss_dssp EECTTTCCEECTG
T ss_pred ccccCCCcEEChH
Confidence 4899999999975
No 21
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=37.27 E-value=9.7 Score=29.77 Aligned_cols=25 Identities=24% Similarity=0.802 Sum_probs=16.4
Q ss_pred cc-ccccccCccc--cccccccceeeec
Q 019483 187 PC-SCQARQHRLI--SNCLSCGKIVCEQ 211 (340)
Q Consensus 187 ~C-~C~A~~H~Li--~NCL~CGKIiCeq 211 (340)
.| .|...-.-+. -.|-.||+|+|..
T Consensus 11 ~C~~C~~~F~~~~RrHHCR~CG~vfC~~ 38 (88)
T 1wfk_A 11 RCYGCAVKFTLFKKEYGCKNCGRAFCNG 38 (88)
T ss_dssp BCTTTCCBCCSSSCEEECSSSCCEEETT
T ss_pred CCcCcCCcccCccccccCCCCCCEEChh
Confidence 35 4555433332 5899999999974
No 22
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=36.28 E-value=9.9 Score=29.68 Aligned_cols=13 Identities=38% Similarity=1.155 Sum_probs=11.3
Q ss_pred cccccccceeeec
Q 019483 199 SNCLSCGKIVCEQ 211 (340)
Q Consensus 199 ~NCL~CGKIiCeq 211 (340)
-.|-+||+|+|..
T Consensus 37 hhCr~CG~v~C~~ 49 (90)
T 3t7l_A 37 HHCRACGKVFCGV 49 (90)
T ss_dssp EECTTTCCEECGG
T ss_pred ccccCCCCEECCc
Confidence 5899999999875
No 23
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=33.75 E-value=11 Score=31.18 Aligned_cols=13 Identities=38% Similarity=1.196 Sum_probs=11.3
Q ss_pred cccccccceeeec
Q 019483 199 SNCLSCGKIVCEQ 211 (340)
Q Consensus 199 ~NCL~CGKIiCeq 211 (340)
-.|-.||+|+|..
T Consensus 86 HHCR~CG~vfC~~ 98 (125)
T 1joc_A 86 HHCRQCGNIFCAE 98 (125)
T ss_dssp EECTTTCCEECGG
T ss_pred ccCCCCCeEEChH
Confidence 4899999999974
No 24
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=33.65 E-value=17 Score=32.94 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=27.2
Q ss_pred CccccccccCccccccccccceeeecc----c-CcccCCCCccccc
Q 019483 186 KPCSCQARQHRLISNCLSCGKIVCEQE----G-EGPCQFCGALVLK 226 (340)
Q Consensus 186 ~~C~C~A~~H~Li~NCL~CGKIiCeqE----G-~gPC~FCG~~v~~ 226 (340)
+.-.+.|+.|.+. |+.||+++-..+ + .-.|..||..+-.
T Consensus 111 ~v~elHG~~~~~~--C~~C~~~~~~~~~~~~~~~p~C~~Cgg~lrP 154 (249)
T 1m2k_A 111 NVIHLHGSLRVVR--CTSCNNSFEVESAPKIPPLPKCDKCGSLLRP 154 (249)
T ss_dssp SEEETTEEEEEEE--ESSSSCEEECSSCCCSSSCCBCSSSSSBEEE
T ss_pred cEEEecCCcceeE--eCCCCCcccchhhccCCCCCCCCCCCCCcCC
Confidence 4567777777654 999999864322 2 3579999987643
No 25
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.54 E-value=19 Score=26.99 Aligned_cols=27 Identities=22% Similarity=0.731 Sum_probs=19.4
Q ss_pred cccCccc--cccccccc---eeeecccCcccC
Q 019483 192 ARQHRLI--SNCLSCGK---IVCEQEGEGPCQ 218 (340)
Q Consensus 192 A~~H~Li--~NCL~CGK---IiCeqEG~gPC~ 218 (340)
.++-|+. |-|+-||| +||.+-....|+
T Consensus 11 ~Qr~p~pgePvCvvCGryGeYICd~Td~DVCS 42 (60)
T 2yqp_A 11 TQRWAEPGEPICVVCGRYGEYICDKTDEDVCS 42 (60)
T ss_dssp CCCCCCTTSCCCSSSSSCCSEECSSSCCEESS
T ss_pred hhcCCCCCCceEEEecCccceeecCCCcchhh
Confidence 3455553 78999998 678877777775
No 26
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=31.05 E-value=20 Score=26.55 Aligned_cols=19 Identities=32% Similarity=0.924 Sum_probs=14.4
Q ss_pred ccccccceeeecccCcccCCCCc
Q 019483 200 NCLSCGKIVCEQEGEGPCQFCGA 222 (340)
Q Consensus 200 NCL~CGKIiCeqEG~gPC~FCG~ 222 (340)
-|+.|+.|. ..+ -|.-||.
T Consensus 3 AC~~C~~v~-~~~---~CpnC~~ 21 (59)
T 3lpe_B 3 ACLKCKYLT-NDE---ICPICHS 21 (59)
T ss_dssp EETTTCBEE-SSS---BCTTTCC
T ss_pred ccccCCccc-CCC---CCCCCCC
Confidence 499999996 222 3999987
No 27
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=30.67 E-value=16 Score=28.87 Aligned_cols=17 Identities=29% Similarity=0.767 Sum_probs=13.3
Q ss_pred ccccccccceeeecccC
Q 019483 198 ISNCLSCGKIVCEQEGE 214 (340)
Q Consensus 198 i~NCL~CGKIiCeqEG~ 214 (340)
+-.|..||.+.|.--|.
T Consensus 51 ~V~C~~Cg~~L~~PTGG 67 (81)
T 2xzm_6 51 TIICEKCSAILCKPTGG 67 (81)
T ss_dssp CEECSSSCCEEEEECSS
T ss_pred EEEccCCCCEEeecCCC
Confidence 36888888888887774
No 28
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=29.75 E-value=15 Score=30.56 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=20.2
Q ss_pred ccccccccceeee-cccCcccCCCCcccc
Q 019483 198 ISNCLSCGKIVCE-QEGEGPCQFCGALVL 225 (340)
Q Consensus 198 i~NCL~CGKIiCe-qEG~gPC~FCG~~v~ 225 (340)
+--|-.||.||=. ..|.++..-||.++-
T Consensus 7 fYkC~~CGnivev~~~g~~~l~CCG~~m~ 35 (126)
T 1vzi_A 7 VYKCEVCGNIVEVLNGGIGELVCCNQDMK 35 (126)
T ss_dssp EEECTTTCCEEEEEECCSSCEEETTEECE
T ss_pred EEEcCCCCeEEEEEcCCCcceecCCcccc
Confidence 3469999999922 456677777998763
No 29
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=29.73 E-value=15 Score=29.92 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=13.9
Q ss_pred cccccCccccccccccceeee
Q 019483 190 CQARQHRLISNCLSCGKIVCE 210 (340)
Q Consensus 190 C~A~~H~Li~NCL~CGKIiCe 210 (340)
|....| ..--|..||+|++.
T Consensus 84 ~~~~~H-~HliC~~Cg~v~~~ 103 (136)
T 1mzb_A 84 ADSGHH-DHMVCVDTGEVIEF 103 (136)
T ss_dssp SSSCCC-EEEEETTTCCEEEE
T ss_pred CCCCcc-eEEEECCCCCEEEe
Confidence 333334 34579999999986
No 30
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=29.07 E-value=15 Score=29.09 Aligned_cols=16 Identities=38% Similarity=0.939 Sum_probs=11.5
Q ss_pred cccccccceeeecccC
Q 019483 199 SNCLSCGKIVCEQEGE 214 (340)
Q Consensus 199 ~NCL~CGKIiCeqEG~ 214 (340)
-.|..||.+.|+--|.
T Consensus 54 V~C~~Cg~~L~~PTGG 69 (82)
T 3u5c_b 54 VTCESCSTILCTPTGG 69 (82)
T ss_dssp CCCSSSCCCCEECCSS
T ss_pred EEccccCCEEeccCCC
Confidence 5777777777776664
No 31
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=28.40 E-value=16 Score=30.46 Aligned_cols=13 Identities=38% Similarity=0.950 Sum_probs=11.1
Q ss_pred cccccccceeeec
Q 019483 199 SNCLSCGKIVCEQ 211 (340)
Q Consensus 199 ~NCL~CGKIiCeq 211 (340)
-.|-+||+|+|..
T Consensus 36 HHCR~CG~ifC~~ 48 (120)
T 1y02_A 36 QTCLDCKKNFCMT 48 (120)
T ss_dssp EECTTTCCEECGG
T ss_pred ccCCCCCCeeCHH
Confidence 4799999999874
No 32
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=27.86 E-value=16 Score=32.43 Aligned_cols=12 Identities=33% Similarity=1.240 Sum_probs=10.9
Q ss_pred cccccccceeee
Q 019483 199 SNCLSCGKIVCE 210 (340)
Q Consensus 199 ~NCL~CGKIiCe 210 (340)
-.|-+||+|+|.
T Consensus 178 hhCr~CG~v~C~ 189 (220)
T 1dvp_A 178 HHCRNCGQVFCG 189 (220)
T ss_dssp EECTTTCCEECS
T ss_pred cccCCcCCEECh
Confidence 589999999997
No 33
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=27.79 E-value=19 Score=28.83 Aligned_cols=16 Identities=25% Similarity=0.845 Sum_probs=10.9
Q ss_pred cccccccceeeecccC
Q 019483 199 SNCLSCGKIVCEQEGE 214 (340)
Q Consensus 199 ~NCL~CGKIiCeqEG~ 214 (340)
-.|..||.+.|.--|.
T Consensus 56 V~C~~CgtvL~~PTGG 71 (86)
T 3iz6_X 56 VVCPGCQTVLCQPTGG 71 (86)
T ss_dssp CCCSSSCCCCSCCCSS
T ss_pred EEccCCCCEeecCCCC
Confidence 5677777777776664
No 34
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=27.77 E-value=27 Score=27.60 Aligned_cols=25 Identities=32% Similarity=0.737 Sum_probs=17.8
Q ss_pred cccccccceeeecccCcccCCCCcccccC
Q 019483 199 SNCLSCGKIVCEQEGEGPCQFCGALVLKE 227 (340)
Q Consensus 199 ~NCL~CGKIiCeqEG~gPC~FCG~~v~~~ 227 (340)
--|+.|+.|+ ++. -|.-||..-+++
T Consensus 24 rAC~~C~~v~---~~d-~CPnCgs~~~T~ 48 (81)
T 3p8b_A 24 KACRHCHYIT---SED-RCPVCGSRDLSE 48 (81)
T ss_dssp EEETTTCBEE---SSS-SCTTTCCCCEES
T ss_pred HHHhhCCCcc---CCC-CCCCCCCCccCC
Confidence 3599999996 222 499999854443
No 35
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=27.47 E-value=27 Score=28.80 Aligned_cols=28 Identities=18% Similarity=0.512 Sum_probs=21.1
Q ss_pred cccccccceeeeccc-CcccCCCCccccc
Q 019483 199 SNCLSCGKIVCEQEG-EGPCQFCGALVLK 226 (340)
Q Consensus 199 ~NCL~CGKIiCeqEG-~gPC~FCG~~v~~ 226 (340)
+-|..||-.++..-+ ..-|++|+..=+.
T Consensus 68 ~~C~~CG~~F~~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 68 AQCRKCGFVFKAEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp CBBTTTCCBCCCCSSCCSSCSSSCCCCBC
T ss_pred cChhhCcCeecccCCCCCCCcCCCCCccC
Confidence 689999999954333 3889999986443
No 36
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=27.24 E-value=21 Score=23.51 Aligned_cols=26 Identities=35% Similarity=0.726 Sum_probs=18.3
Q ss_pred cccccccceeee-cccCcccCCCCccc
Q 019483 199 SNCLSCGKIVCE-QEGEGPCQFCGALV 224 (340)
Q Consensus 199 ~NCL~CGKIiCe-qEG~gPC~FCG~~v 224 (340)
--|-.||.||=. ..|.++-.-||.++
T Consensus 7 Y~C~~CGnivev~~~g~~~l~CCG~~M 33 (36)
T 1dxg_A 7 YKCELCGQVVKVLEEGGGTLVCCGEDM 33 (36)
T ss_dssp EECTTTCCEEEEEECCSSCEEETTEEC
T ss_pred EEcCCCCcEEEEEeCCCcCEEeCCccc
Confidence 468899999844 35566767788764
No 37
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=27.17 E-value=29 Score=27.25 Aligned_cols=28 Identities=14% Similarity=0.070 Sum_probs=21.4
Q ss_pred cccccccceeee------cccCcccCCCCccccc
Q 019483 199 SNCLSCGKIVCE------QEGEGPCQFCGALVLK 226 (340)
Q Consensus 199 ~NCL~CGKIiCe------qEG~gPC~FCG~~v~~ 226 (340)
|-.+.||.++|. ..+.+.|++||.++..
T Consensus 42 PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 42 PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 445679999986 2357899999998754
No 38
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=26.15 E-value=18 Score=32.53 Aligned_cols=13 Identities=38% Similarity=1.211 Sum_probs=11.3
Q ss_pred cccccccceeeec
Q 019483 199 SNCLSCGKIVCEQ 211 (340)
Q Consensus 199 ~NCL~CGKIiCeq 211 (340)
-.|-+||+|+|..
T Consensus 181 hHCR~CG~v~C~~ 193 (226)
T 3zyq_A 181 HHCRACGQIFCGK 193 (226)
T ss_dssp EECTTTCCEECTT
T ss_pred cccCCCcCEeChh
Confidence 5899999999874
No 39
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=26.11 E-value=24 Score=26.90 Aligned_cols=17 Identities=41% Similarity=0.970 Sum_probs=13.3
Q ss_pred ccccccccceeeecccC
Q 019483 198 ISNCLSCGKIVCEQEGE 214 (340)
Q Consensus 198 i~NCL~CGKIiCeqEG~ 214 (340)
+-+|..||.+.|..-|.
T Consensus 26 vV~C~~Cg~~L~~PTGG 42 (66)
T 1qxf_A 26 IVKCIICGRTVAEPTGG 42 (66)
T ss_dssp CEECSSSCCEEEECCSS
T ss_pred EEEcccCCCEEeecCCc
Confidence 35888999988887764
No 40
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=25.93 E-value=17 Score=33.68 Aligned_cols=39 Identities=26% Similarity=0.480 Sum_probs=27.3
Q ss_pred CccccccccCccccccccccceeeecc-----------cCcccCCCCccccc
Q 019483 186 KPCSCQARQHRLISNCLSCGKIVCEQE-----------GEGPCQFCGALVLK 226 (340)
Q Consensus 186 ~~C~C~A~~H~Li~NCL~CGKIiCeqE-----------G~gPC~FCG~~v~~ 226 (340)
+.-.++|+.|.+ -|+.||+++=..+ ..-.|..||..+-.
T Consensus 126 ~v~elHG~~~~~--~C~~C~~~~~~~~~~~~~~~~~~~~~P~C~~Cgg~lrP 175 (289)
T 1q1a_A 126 LIIEAHGSFAHC--HCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKP 175 (289)
T ss_dssp GEEETTEEEEEE--EETTTCCEECHHHHHHHHTCSSCCSCCBCTTTCCBEEE
T ss_pred cEEEecCCcCce--EECCCCCCCcHHHHHHHHhhccCCCCccCCCCCCEECC
Confidence 567788887766 4999999864311 23579999987643
No 41
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=25.65 E-value=22 Score=32.18 Aligned_cols=39 Identities=18% Similarity=0.385 Sum_probs=26.9
Q ss_pred CccccccccCccccccccccceeeecc--------cCcccCCCCccccc
Q 019483 186 KPCSCQARQHRLISNCLSCGKIVCEQE--------GEGPCQFCGALVLK 226 (340)
Q Consensus 186 ~~C~C~A~~H~Li~NCL~CGKIiCeqE--------G~gPC~FCG~~v~~ 226 (340)
+.-.+.|+.|.+. |+.||+.+-..+ ..-.|..||..+-.
T Consensus 111 ~v~elHG~~~~~~--C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP 157 (246)
T 1yc5_A 111 KVIELHGNVEEYY--CVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRP 157 (246)
T ss_dssp CEEETTEEEEEEE--ETTTCCEEEHHHHHHHTTTCSSCBCTTTCCBEEE
T ss_pred cEEEecCccceeE--cCCCCCCCcHHHHHHHhccCCCCCCCCCCCccCc
Confidence 4567777777664 999999764311 23579999987643
No 42
>1oqe_K Tumor necrosis factor receptor superfamily member 13C; ligand receptor complex, immune system; 2.50A {Homo sapiens} SCOP: g.24.1.2
Probab=25.38 E-value=18 Score=23.81 Aligned_cols=13 Identities=31% Similarity=1.012 Sum_probs=11.0
Q ss_pred Cccccccccccce
Q 019483 195 HRLISNCLSCGKI 207 (340)
Q Consensus 195 H~Li~NCL~CGKI 207 (340)
.||+.||..|+-.
T Consensus 11 DpLvR~CVaC~Ll 23 (31)
T 1oqe_K 11 DLLVRHCVACGLL 23 (31)
T ss_dssp ETTTTEEEEGGGS
T ss_pred ChhhhcceEEEEE
Confidence 5899999999854
No 43
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=24.98 E-value=22 Score=25.63 Aligned_cols=9 Identities=44% Similarity=0.991 Sum_probs=7.2
Q ss_pred cccCCCCcc
Q 019483 215 GPCQFCGAL 223 (340)
Q Consensus 215 gPC~FCG~~ 223 (340)
--|+|||..
T Consensus 12 ~~CSFCGk~ 20 (51)
T 2ds5_A 12 LYCSFCGKS 20 (51)
T ss_dssp CBCTTTCCB
T ss_pred cEecCCCCC
Confidence 369999984
No 44
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=24.81 E-value=20 Score=32.61 Aligned_cols=43 Identities=28% Similarity=0.570 Sum_probs=24.5
Q ss_pred eehHHHhh----cCC-cccCCCCccc-cccccCc----------cccccccccceeeec
Q 019483 169 VISLAEAA----KGS-IVFQQGKPCS-CQARQHR----------LISNCLSCGKIVCEQ 211 (340)
Q Consensus 169 ~vsL~e~~----~~~-~~~~~r~~C~-C~A~~H~----------Li~NCL~CGKIiCeq 211 (340)
++.+|+.. +|- |+.-.++.|. |.-..-| -|..|-+||||+=-.
T Consensus 177 lL~~Yerir~~~~g~avv~v~~~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~~~ 235 (256)
T 3na7_A 177 IYSFYERIRRWAKNTSIVTIKKQACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILYAE 235 (256)
T ss_dssp HHHHHHHHHHHHGGGSEEECBTTBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEECS
T ss_pred HHHHHHHHHHhCCCceEEEeeCCccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEEeC
Confidence 66777742 332 2322344564 7665443 257899999987543
No 45
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=24.41 E-value=25 Score=28.62 Aligned_cols=10 Identities=50% Similarity=1.311 Sum_probs=8.6
Q ss_pred cccccceeee
Q 019483 201 CLSCGKIVCE 210 (340)
Q Consensus 201 CL~CGKIiCe 210 (340)
||.||.|-|-
T Consensus 39 CL~CG~vgCg 48 (109)
T 3c5k_A 39 CLSCYQVYCG 48 (109)
T ss_dssp ETTTCCEEEC
T ss_pred eeecCccccC
Confidence 9999999773
No 46
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.80 E-value=22 Score=29.56 Aligned_cols=14 Identities=43% Similarity=0.619 Sum_probs=11.8
Q ss_pred cccccccccceeee
Q 019483 197 LISNCLSCGKIVCE 210 (340)
Q Consensus 197 Li~NCL~CGKIiCe 210 (340)
..--|..||+|++.
T Consensus 98 ~HliC~~Cg~v~~~ 111 (150)
T 2xig_A 98 DHIICLHCGKIIEF 111 (150)
T ss_dssp EEEEETTTCCEEEE
T ss_pred eEEEECCCCCEEEe
Confidence 45679999999986
No 47
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.72 E-value=22 Score=29.38 Aligned_cols=14 Identities=14% Similarity=0.489 Sum_probs=11.4
Q ss_pred cccccccccceeee
Q 019483 197 LISNCLSCGKIVCE 210 (340)
Q Consensus 197 Li~NCL~CGKIiCe 210 (340)
..--|..||+|++.
T Consensus 89 ~HliC~~Cg~v~~~ 102 (145)
T 3eyy_A 89 IHLVCRDCTNVIEA 102 (145)
T ss_dssp EEEEESSSSCEEEE
T ss_pred eEEEECCCCCEEEe
Confidence 34579999999976
No 48
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.64 E-value=23 Score=29.23 Aligned_cols=13 Identities=46% Similarity=0.700 Sum_probs=11.1
Q ss_pred ccccccccceeee
Q 019483 198 ISNCLSCGKIVCE 210 (340)
Q Consensus 198 i~NCL~CGKIiCe 210 (340)
.--|..||+|++.
T Consensus 93 HliC~~Cg~v~~~ 105 (145)
T 2fe3_A 93 HAICENCGKIVDF 105 (145)
T ss_dssp EEEETTTCCEEEC
T ss_pred eEEECCCCCEEEe
Confidence 4579999999986
No 49
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.25 E-value=23 Score=30.02 Aligned_cols=13 Identities=38% Similarity=0.652 Sum_probs=10.9
Q ss_pred ccccccccceeee
Q 019483 198 ISNCLSCGKIVCE 210 (340)
Q Consensus 198 i~NCL~CGKIiCe 210 (340)
.--|..||+|++.
T Consensus 107 HliC~~CG~v~e~ 119 (162)
T 4ets_A 107 HMICKNCGKIIEF 119 (162)
T ss_dssp EEEETTTCCEEEE
T ss_pred EEEECCCCCEEEe
Confidence 3569999999976
No 50
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=23.08 E-value=30 Score=30.28 Aligned_cols=28 Identities=4% Similarity=-0.155 Sum_probs=19.8
Q ss_pred cccccccceeeec-------ccCcccCCCCccccc
Q 019483 199 SNCLSCGKIVCEQ-------EGEGPCQFCGALVLK 226 (340)
Q Consensus 199 ~NCL~CGKIiCeq-------EG~gPC~FCG~~v~~ 226 (340)
|-.+.||-++|.. ++...|++|+.++..
T Consensus 221 Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 221 PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 3446799999872 344449999998853
No 51
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.90 E-value=31 Score=26.10 Aligned_cols=17 Identities=35% Similarity=0.763 Sum_probs=13.7
Q ss_pred ccccccccceeeecccC
Q 019483 198 ISNCLSCGKIVCEQEGE 214 (340)
Q Consensus 198 i~NCL~CGKIiCeqEG~ 214 (340)
.-.|..||.+.|.--|.
T Consensus 34 ~V~C~~Cgt~L~~PTGG 50 (63)
T 3j20_W 34 KVRCLICGATLVEPTGG 50 (63)
T ss_dssp CEECSSSCCEEEECCSS
T ss_pred EEEccCcCCEEecCCCC
Confidence 36899999999987764
No 52
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=22.76 E-value=34 Score=23.84 Aligned_cols=26 Identities=38% Similarity=0.884 Sum_probs=19.5
Q ss_pred ccccceeee-------cccCcccCCCCcccccC
Q 019483 202 LSCGKIVCE-------QEGEGPCQFCGALVLKE 227 (340)
Q Consensus 202 L~CGKIiCe-------qEG~gPC~FCG~~v~~~ 227 (340)
+.||-++|. ..+...|+.|+..+...
T Consensus 24 ~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 24 NVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 468888875 44667899999988643
No 53
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=22.66 E-value=30 Score=26.22 Aligned_cols=12 Identities=25% Similarity=0.844 Sum_probs=10.5
Q ss_pred cccCCCCccccc
Q 019483 215 GPCQFCGALVLK 226 (340)
Q Consensus 215 gPC~FCG~~v~~ 226 (340)
..|+|||..|+.
T Consensus 4 ~~C~Fcg~~IyP 15 (66)
T 1vq8_U 4 RECDYCGTDIEP 15 (66)
T ss_dssp CBCTTTCCBCCS
T ss_pred eEecCcCCcccC
Confidence 579999999875
No 54
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=21.89 E-value=26 Score=26.70 Aligned_cols=9 Identities=44% Similarity=0.991 Sum_probs=7.2
Q ss_pred cccCCCCcc
Q 019483 215 GPCQFCGAL 223 (340)
Q Consensus 215 gPC~FCG~~ 223 (340)
--|+|||..
T Consensus 19 ~~CSFCGK~ 27 (67)
T 1ovx_A 19 LYCSFCGKS 27 (67)
T ss_dssp CCCTTTCCC
T ss_pred cEecCCCCC
Confidence 369999984
No 55
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=21.71 E-value=42 Score=24.06 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=20.6
Q ss_pred cccccceeee-------cccCcccCCCCccccc
Q 019483 201 CLSCGKIVCE-------QEGEGPCQFCGALVLK 226 (340)
Q Consensus 201 CL~CGKIiCe-------qEG~gPC~FCG~~v~~ 226 (340)
-+.||-++|. ..|...|+.|+..+..
T Consensus 23 ~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 23 IVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp EETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred EcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 4689999986 3467889999998754
No 56
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.42 E-value=30 Score=26.21 Aligned_cols=12 Identities=25% Similarity=0.764 Sum_probs=10.6
Q ss_pred cccCCCCccccc
Q 019483 215 GPCQFCGALVLK 226 (340)
Q Consensus 215 gPC~FCG~~v~~ 226 (340)
..|+|||..|+.
T Consensus 5 ~~C~Fcg~~IyP 16 (66)
T 3j21_V 5 NVCSYCGKPFEP 16 (66)
T ss_dssp CBCTTTCSBCCT
T ss_pred eEecCcCCcccC
Confidence 579999999985
No 57
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=21.10 E-value=39 Score=30.65 Aligned_cols=38 Identities=24% Similarity=0.475 Sum_probs=26.2
Q ss_pred CccccccccCccccccccccceeeecc--------cCcccCCCCc-ccc
Q 019483 186 KPCSCQARQHRLISNCLSCGKIVCEQE--------GEGPCQFCGA-LVL 225 (340)
Q Consensus 186 ~~C~C~A~~H~Li~NCL~CGKIiCeqE--------G~gPC~FCG~-~v~ 225 (340)
+.-.+.|+.|.+ .|+.||+.+-..+ ..-.|..||. .+-
T Consensus 113 ~v~elHG~~~~~--~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~~lr 159 (253)
T 1ma3_A 113 RVLELHGSMDKL--DCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVK 159 (253)
T ss_dssp SEEETTEEEEEE--EETTTCCEEEGGGTHHHHHTTCCCCCTTTCCSCEE
T ss_pred CEEEeCCCcCee--eeCCCCCcCcHHHHHHHhccCCCCCCCCCCCcccc
Confidence 456777777765 5999999864322 1357999999 653
No 58
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=21.03 E-value=30 Score=29.16 Aligned_cols=24 Identities=29% Similarity=0.762 Sum_probs=16.1
Q ss_pred cccccccceeeecccCcccCCCCccc
Q 019483 199 SNCLSCGKIVCEQEGEGPCQFCGALV 224 (340)
Q Consensus 199 ~NCL~CGKIiCeqEG~gPC~FCG~~v 224 (340)
.-|..||+++---- .-|..||..-
T Consensus 48 ~rC~~CG~~~~PPr--~~Cp~C~s~~ 71 (145)
T 3irb_A 48 SKCSKCGRIFVPAR--SYCEHCFVKI 71 (145)
T ss_dssp EECTTTCCEEESCC--SEETTTTEEC
T ss_pred EEeCCCCcEEcCch--hhCcCCCCCc
Confidence 56888888865532 3488888753
No 59
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=20.95 E-value=28 Score=28.98 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=13.7
Q ss_pred cccccCccccccccccceeee
Q 019483 190 CQARQHRLISNCLSCGKIVCE 210 (340)
Q Consensus 190 C~A~~H~Li~NCL~CGKIiCe 210 (340)
|....| ..--|..||+|++.
T Consensus 83 ~~~~~H-~HliC~~Cg~v~~~ 102 (150)
T 2w57_A 83 STQHHH-DHLVCLDCGEVIEF 102 (150)
T ss_dssp CCSSCC-EEEEETTTCCEEEE
T ss_pred cCCCce-eEEEECCCCCEEEe
Confidence 333334 34579999999986
No 60
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=20.64 E-value=48 Score=23.28 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=18.6
Q ss_pred ccccccceeeecccC--------c--ccCCCCcc
Q 019483 200 NCLSCGKIVCEQEGE--------G--PCQFCGAL 223 (340)
Q Consensus 200 NCL~CGKIiCeqEG~--------g--PC~FCG~~ 223 (340)
-|..||-|+=..+|. . .|.-||+.
T Consensus 6 ~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 6 VCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp EETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred ECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 599999998766663 1 69999974
No 61
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=20.37 E-value=33 Score=33.28 Aligned_cols=38 Identities=26% Similarity=0.488 Sum_probs=26.8
Q ss_pred CccccccccCccccccccccceeeecc----------c-CcccCCCCcccc
Q 019483 186 KPCSCQARQHRLISNCLSCGKIVCEQE----------G-EGPCQFCGALVL 225 (340)
Q Consensus 186 ~~C~C~A~~H~Li~NCL~CGKIiCeqE----------G-~gPC~FCG~~v~ 225 (340)
+.-.++|+.|.+ -|+.||+++-..+ + .-.|..||..+-
T Consensus 134 ~VielHGsl~~~--~C~~C~~~~~~~~~~~~~~~~~~~~~P~Cp~Cgg~lr 182 (361)
T 1q14_A 134 LIIEAHGSFAHC--HCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVK 182 (361)
T ss_dssp GEEETTEEEEEE--EETTTCCEECTHHHHHHTTSSSCSCCCBCTTTCCBEE
T ss_pred eEEecccccccc--CcCCCCccCcHHHHHHHHhhcccCCCCCCcCCCCEeC
Confidence 457788887766 4999999864311 1 257999998764
No 62
>2p0t_A UPF0307 protein pspto_4464; APC85033, conserved putative protein, pseudomonas syringae P STR. DC3000, structural genomics, PSI-2; 2.19A {Pseudomonas syringae PV} SCOP: a.290.1.1
Probab=20.28 E-value=1.3e+02 Score=26.71 Aligned_cols=45 Identities=13% Similarity=0.219 Sum_probs=31.0
Q ss_pred HHHHHHHHHhh-cccCCCcHHHHHHhhcccccCCchHH---HHHHHHhh
Q 019483 8 LEKALVDLCKR-IESLDLDGEVISGLVSYCEFAQPLDA---KEYLDNII 52 (340)
Q Consensus 8 ~~~~L~~~~~~-~~~L~~~~d~~~~ils~~el~~~~d~---~eY~~nLL 52 (340)
|++.|++|-.. |..||+|+++...|+..--|++-+-. -.|++-|+
T Consensus 31 LG~eL~~Ls~~ql~klpL~e~L~~Ai~~a~ri~~~earRRQlqyIGKLm 79 (176)
T 2p0t_A 31 LGERLTTLKADVLAKLPLTDALRKALAEAPKHTANIARKRHILFIGKLM 79 (176)
T ss_dssp HHHHHTTSCHHHHTTSCCCHHHHHHHHHGGGCCSHHHHHHHHHHHHHHG
T ss_pred HHHHHHhCCHHHHhcCCCCHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 45556666444 66699999999999885446653222 57888888
No 63
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=20.26 E-value=29 Score=25.76 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=15.3
Q ss_pred cccccCcccccccccc
Q 019483 190 CQARQHRLISNCLSCG 205 (340)
Q Consensus 190 C~A~~H~Li~NCL~CG 205 (340)
|.|+.|+-..||--||
T Consensus 25 C~ARnp~~A~~CRKCg 40 (56)
T 2ayj_A 25 CGALNPIRATKCRRCH 40 (56)
T ss_dssp TCCEECTTCSSCTTTC
T ss_pred ccCcCCcccccccCCC
Confidence 9999999999999888
No 64
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=20.21 E-value=34 Score=25.80 Aligned_cols=28 Identities=11% Similarity=0.108 Sum_probs=20.8
Q ss_pred cccccccceeee------cccCcccCCCCccccc
Q 019483 199 SNCLSCGKIVCE------QEGEGPCQFCGALVLK 226 (340)
Q Consensus 199 ~NCL~CGKIiCe------qEG~gPC~FCG~~v~~ 226 (340)
|-.+.||-++|. ..+.+.|++||..+..
T Consensus 27 PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 27 PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 445679999986 2346899999998753
No 65
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=20.10 E-value=35 Score=26.74 Aligned_cols=25 Identities=24% Similarity=0.596 Sum_probs=15.1
Q ss_pred ccccccce--eeecccCcccCCCCccc
Q 019483 200 NCLSCGKI--VCEQEGEGPCQFCGALV 224 (340)
Q Consensus 200 NCL~CGKI--iCeqEG~gPC~FCG~~v 224 (340)
.|.+||+- .-..-|.--|.+||..+
T Consensus 29 ~Cp~CG~~~v~r~atGiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 29 ACPNCGEDRVDRQGTGIWQCSYCDYKF 55 (83)
T ss_dssp ECSSSCCEEEEEEETTEEEETTTCCEE
T ss_pred cCCCCCCcceeccCCCeEECCCCCCEe
Confidence 57777762 24445556677777743
Done!