Query 019484
Match_columns 340
No_of_seqs 486 out of 2204
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 09:50:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019484.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019484hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00466 SRA SET and RING fi 99.9 5.4E-23 1.2E-27 174.0 6.0 67 265-340 2-72 (155)
2 PF02182 SAD_SRA: SAD/SRA doma 99.9 1.6E-22 3.4E-27 172.3 4.0 67 265-340 1-70 (155)
3 KOG1244 Predicted transcriptio 99.4 1.1E-13 2.3E-18 124.2 1.7 56 5-61 274-329 (336)
4 PF15227 zf-C3HC4_4: zinc fing 99.3 2.6E-12 5.6E-17 85.4 2.4 39 150-188 1-42 (42)
5 PF14835 zf-RING_6: zf-RING of 99.2 1.2E-11 2.5E-16 88.0 3.3 63 142-210 2-65 (65)
6 TIGR00599 rad18 DNA repair pro 99.2 2.4E-11 5.2E-16 117.6 5.4 76 139-218 18-93 (397)
7 smart00504 Ubox Modified RING 99.1 4E-11 8.7E-16 86.7 4.2 62 147-212 1-62 (63)
8 KOG0825 PHD Zn-finger protein 99.1 2.5E-11 5.4E-16 122.2 2.6 53 8-61 211-264 (1134)
9 PF04564 U-box: U-box domain; 99.1 7E-11 1.5E-15 88.3 4.3 70 146-218 3-72 (73)
10 cd04718 BAH_plant_2 BAH, or Br 99.1 9E-11 1.9E-15 98.0 4.8 32 36-68 1-32 (148)
11 PLN03208 E3 ubiquitin-protein 99.1 7.6E-11 1.6E-15 102.7 3.8 52 143-194 14-80 (193)
12 KOG0287 Postreplication repair 99.0 7.6E-11 1.6E-15 109.0 0.8 75 139-217 15-89 (442)
13 PF13923 zf-C3HC4_2: Zinc fing 99.0 2.6E-10 5.6E-15 74.5 1.7 38 150-188 1-39 (39)
14 PF00628 PHD: PHD-finger; Int 98.9 2.4E-10 5.3E-15 79.1 0.9 47 14-61 1-49 (51)
15 PF13920 zf-C3HC4_3: Zinc fing 98.9 8.9E-10 1.9E-14 76.1 1.7 46 147-193 2-48 (50)
16 KOG0823 Predicted E3 ubiquitin 98.8 2.3E-09 4.9E-14 95.2 3.9 50 145-194 45-96 (230)
17 PF00097 zf-C3HC4: Zinc finger 98.8 1.9E-09 4.1E-14 71.1 2.1 39 150-188 1-41 (41)
18 COG5432 RAD18 RING-finger-cont 98.8 1.6E-09 3.5E-14 98.4 2.2 74 140-217 18-91 (391)
19 KOG0317 Predicted E3 ubiquitin 98.8 3E-09 6.6E-14 97.1 3.0 49 145-194 237-285 (293)
20 PF13639 zf-RING_2: Ring finge 98.8 1.2E-09 2.6E-14 73.3 0.1 40 149-189 2-44 (44)
21 KOG0320 Predicted E3 ubiquitin 98.7 3.8E-09 8.2E-14 90.0 1.8 49 146-195 130-180 (187)
22 KOG4299 PHD Zn-finger protein 98.7 5.3E-09 1.2E-13 104.3 1.9 53 12-65 253-307 (613)
23 PHA02929 N1R/p28-like protein; 98.7 1.1E-08 2.4E-13 92.8 3.6 48 146-194 173-228 (238)
24 cd00162 RING RING-finger (Real 98.7 1.1E-08 2.5E-13 67.8 2.4 44 149-192 1-45 (45)
25 KOG2177 Predicted E3 ubiquitin 98.7 2E-08 4.3E-13 93.4 4.5 74 139-218 5-78 (386)
26 PF13445 zf-RING_UBOX: RING-ty 98.6 7.1E-09 1.5E-13 68.9 0.7 36 150-186 1-43 (43)
27 smart00249 PHD PHD zinc finger 98.6 3.3E-08 7.2E-13 66.4 3.8 46 14-60 1-47 (47)
28 smart00184 RING Ring finger. E 98.6 3.7E-08 8.1E-13 63.0 2.2 39 150-188 1-39 (39)
29 PHA02926 zinc finger-like prot 98.5 4.4E-08 9.6E-13 86.5 3.1 53 142-194 165-231 (242)
30 PF14634 zf-RING_5: zinc-RING 98.5 5.2E-08 1.1E-12 65.3 2.4 41 149-190 1-44 (44)
31 KOG1512 PHD Zn-finger protein 98.5 3.6E-08 7.8E-13 89.5 1.4 55 4-61 306-361 (381)
32 KOG0978 E3 ubiquitin ligase in 98.4 9.5E-08 2.1E-12 97.7 3.0 59 137-195 633-691 (698)
33 KOG0311 Predicted E3 ubiquitin 98.4 2.3E-08 4.9E-13 93.6 -1.5 76 139-216 35-111 (381)
34 KOG0824 Predicted E3 ubiquitin 98.4 8.5E-08 1.8E-12 88.0 1.9 47 148-194 8-54 (324)
35 KOG0957 PHD finger protein [Ge 98.4 6.6E-08 1.4E-12 93.8 0.9 48 12-60 544-595 (707)
36 KOG1245 Chromatin remodeling c 98.4 4.1E-08 8.9E-13 108.3 -0.9 52 12-64 1108-1159(1404)
37 KOG4443 Putative transcription 98.4 1.5E-07 3.3E-12 94.2 2.4 55 7-62 63-117 (694)
38 COG5574 PEX10 RING-finger-cont 98.3 2E-07 4.4E-12 84.3 1.8 50 145-194 213-263 (271)
39 KOG2164 Predicted E3 ubiquitin 98.3 3.3E-07 7.1E-12 89.8 2.4 49 147-195 186-238 (513)
40 KOG2660 Locus-specific chromos 98.3 3.6E-07 7.9E-12 85.1 1.9 73 140-213 8-82 (331)
41 PF12678 zf-rbx1: RING-H2 zinc 98.2 7.1E-07 1.5E-11 66.6 2.7 40 149-189 21-73 (73)
42 COG5243 HRD1 HRD ubiquitin lig 98.2 3.6E-06 7.8E-11 79.3 6.3 46 146-192 286-344 (491)
43 TIGR00570 cdk7 CDK-activating 98.1 7.5E-06 1.6E-10 76.7 6.3 49 147-195 3-56 (309)
44 COG5152 Uncharacterized conser 98.0 2.5E-06 5.4E-11 73.9 1.8 59 147-210 196-254 (259)
45 KOG4159 Predicted E3 ubiquitin 98.0 3.2E-06 6.9E-11 82.3 2.6 70 145-215 82-153 (398)
46 KOG0383 Predicted helicase [Ge 97.9 3.3E-06 7.1E-11 87.1 0.9 50 11-64 46-95 (696)
47 KOG4628 Predicted E3 ubiquitin 97.9 5.3E-06 1.2E-10 78.9 1.8 47 148-194 230-279 (348)
48 PF12861 zf-Apc11: Anaphase-pr 97.8 8.9E-06 1.9E-10 61.7 2.3 34 160-193 46-82 (85)
49 KOG1813 Predicted E3 ubiquitin 97.8 1E-05 2.3E-10 74.3 3.1 47 147-194 241-287 (313)
50 COG5540 RING-finger-containing 97.7 1.7E-05 3.7E-10 73.0 2.0 49 145-193 321-372 (374)
51 KOG0955 PHD finger protein BR1 97.7 2.6E-05 5.6E-10 83.6 3.3 55 8-65 215-271 (1051)
52 KOG0802 E3 ubiquitin ligase [P 97.6 1.7E-05 3.6E-10 81.2 0.6 47 146-193 290-341 (543)
53 KOG4172 Predicted E3 ubiquitin 97.6 1.2E-05 2.5E-10 55.2 -0.5 45 149-193 9-54 (62)
54 COG5222 Uncharacterized conser 97.6 0.00014 3.1E-09 66.9 6.0 70 147-218 274-344 (427)
55 PF11789 zf-Nse: Zinc-finger o 97.5 4.2E-05 9.1E-10 54.1 1.4 42 146-187 10-53 (57)
56 KOG0297 TNF receptor-associate 97.4 0.00018 3.8E-09 70.7 5.0 51 143-194 17-68 (391)
57 KOG1973 Chromatin remodeling p 97.4 6.6E-05 1.4E-09 70.2 1.7 39 23-64 228-269 (274)
58 KOG2879 Predicted E3 ubiquitin 97.2 0.0002 4.3E-09 65.4 3.0 48 146-193 238-287 (298)
59 COG5034 TNG2 Chromatin remodel 96.9 0.00043 9.3E-09 62.6 1.8 41 17-61 225-268 (271)
60 KOG1039 Predicted E3 ubiquitin 96.8 0.00054 1.2E-08 65.6 2.0 50 145-194 159-222 (344)
61 KOG4185 Predicted E3 ubiquitin 96.8 0.001 2.2E-08 62.9 3.4 67 147-213 3-77 (296)
62 KOG0804 Cytoplasmic Zn-finger 96.8 0.00047 1E-08 66.9 1.1 48 143-193 171-222 (493)
63 KOG4265 Predicted E3 ubiquitin 96.6 0.0008 1.7E-08 63.8 1.6 48 146-194 289-337 (349)
64 KOG4323 Polycomb-like PHD Zn-f 96.5 0.001 2.2E-08 65.6 1.0 53 12-65 168-226 (464)
65 PF11793 FANCL_C: FANCL C-term 96.4 0.0012 2.6E-08 48.7 1.1 48 147-194 2-67 (70)
66 KOG1002 Nucleotide excision re 96.4 0.0012 2.5E-08 65.3 0.8 50 145-194 534-587 (791)
67 KOG1785 Tyrosine kinase negati 96.3 0.0015 3.3E-08 62.5 1.1 47 148-194 370-417 (563)
68 KOG0828 Predicted E3 ubiquitin 96.3 0.0016 3.5E-08 63.9 1.3 48 146-193 570-634 (636)
69 KOG4692 Predicted E3 ubiquitin 96.2 0.0021 4.7E-08 60.6 1.5 47 146-193 421-467 (489)
70 KOG4367 Predicted Zn-finger pr 96.1 0.0019 4.1E-08 62.5 0.7 36 144-179 1-36 (699)
71 KOG0954 PHD finger protein [Ge 96.1 0.0024 5.1E-08 65.5 1.4 51 10-63 269-321 (893)
72 PF14570 zf-RING_4: RING/Ubox 96.1 0.0056 1.2E-07 41.5 2.7 43 150-192 1-47 (48)
73 PF14447 Prok-RING_4: Prokaryo 96.0 0.0045 9.8E-08 42.9 2.0 46 146-194 6-51 (55)
74 smart00744 RINGv The RING-vari 96.0 0.0045 9.8E-08 42.3 2.0 41 149-189 1-49 (49)
75 KOG1246 DNA-binding protein ju 95.9 0.0079 1.7E-07 65.4 4.6 54 10-65 153-206 (904)
76 KOG4275 Predicted E3 ubiquitin 95.9 0.0013 2.8E-08 60.6 -1.4 42 147-193 300-342 (350)
77 COG5194 APC11 Component of SCF 95.7 0.0062 1.3E-07 45.4 1.8 44 149-193 33-81 (88)
78 KOG1645 RING-finger-containing 95.6 0.0051 1.1E-07 59.2 1.4 48 147-194 4-57 (463)
79 KOG1493 Anaphase-promoting com 95.5 0.003 6.5E-08 46.6 -0.4 34 160-193 45-81 (84)
80 KOG1734 Predicted RING-contain 95.4 0.0046 9.9E-08 56.5 0.2 47 147-193 224-281 (328)
81 KOG1571 Predicted E3 ubiquitin 95.1 0.015 3.3E-07 55.3 2.7 48 143-194 301-348 (355)
82 KOG3002 Zn finger protein [Gen 95.0 0.027 5.8E-07 53.2 4.2 81 143-233 44-125 (299)
83 KOG1473 Nucleosome remodeling 94.9 0.015 3.2E-07 62.4 2.2 51 8-62 340-390 (1414)
84 COG5141 PHD zinc finger-contai 94.8 0.012 2.7E-07 57.8 1.4 50 12-64 193-244 (669)
85 KOG0825 PHD Zn-finger protein 94.8 0.0048 1E-07 63.7 -1.6 48 146-194 122-172 (1134)
86 COG5219 Uncharacterized conser 94.7 0.009 2E-07 62.9 0.2 50 144-193 1466-1523(1525)
87 KOG0827 Predicted E3 ubiquitin 94.7 0.018 4E-07 55.1 2.1 47 148-194 5-57 (465)
88 KOG3039 Uncharacterized conser 93.9 0.036 7.8E-07 50.1 2.2 49 146-195 220-272 (303)
89 KOG0383 Predicted helicase [Ge 93.7 0.041 8.9E-07 57.4 2.6 33 32-65 1-33 (696)
90 PF04641 Rtf2: Rtf2 RING-finge 93.4 0.064 1.4E-06 49.8 3.1 51 144-196 110-164 (260)
91 KOG1001 Helicase-like transcri 93.2 0.03 6.5E-07 58.6 0.7 54 140-194 447-501 (674)
92 KOG4739 Uncharacterized protei 93.2 0.041 8.8E-07 49.8 1.3 44 148-194 4-49 (233)
93 PF13831 PHD_2: PHD-finger; PD 93.0 0.011 2.5E-07 37.6 -1.8 34 25-61 2-36 (36)
94 KOG2930 SCF ubiquitin ligase, 93.0 0.042 9.2E-07 43.0 1.0 27 164-191 80-106 (114)
95 KOG3800 Predicted E3 ubiquitin 92.9 0.071 1.5E-06 49.4 2.4 46 149-194 2-52 (300)
96 PF14446 Prok-RING_1: Prokaryo 92.4 0.084 1.8E-06 36.6 1.8 33 11-43 4-37 (54)
97 KOG2114 Vacuolar assembly/sort 92.3 0.17 3.6E-06 53.3 4.4 42 147-192 840-882 (933)
98 KOG3161 Predicted E3 ubiquitin 92.2 0.054 1.2E-06 55.1 0.8 42 145-190 9-54 (861)
99 KOG2817 Predicted E3 ubiquitin 92.2 0.078 1.7E-06 51.2 1.8 49 143-191 330-383 (394)
100 KOG4362 Transcriptional regula 92.2 0.053 1.1E-06 56.1 0.7 72 139-213 13-86 (684)
101 PF02891 zf-MIZ: MIZ/SP-RING z 92.0 0.1 2.2E-06 35.8 1.7 45 147-191 2-50 (50)
102 KOG1814 Predicted E3 ubiquitin 91.9 0.093 2E-06 50.9 2.0 53 138-190 175-237 (445)
103 KOG0956 PHD finger protein AF1 91.7 0.078 1.7E-06 54.4 1.4 50 13-65 6-59 (900)
104 COG5432 RAD18 RING-finger-cont 91.2 0.026 5.7E-07 52.1 -2.3 48 10-65 23-70 (391)
105 PF07800 DUF1644: Protein of u 91.0 0.14 3E-06 43.4 1.9 21 146-166 1-21 (162)
106 COG5236 Uncharacterized conser 90.5 0.12 2.6E-06 49.1 1.2 47 146-192 60-107 (493)
107 KOG0826 Predicted E3 ubiquitin 90.4 0.13 2.9E-06 48.4 1.5 47 146-193 299-346 (357)
108 KOG1941 Acetylcholine receptor 90.1 0.083 1.8E-06 50.8 -0.2 46 147-192 365-415 (518)
109 PF05290 Baculo_IE-1: Baculovi 89.8 0.22 4.8E-06 41.0 2.1 49 146-194 79-133 (140)
110 PF10367 Vps39_2: Vacuolar sor 89.7 0.17 3.6E-06 39.9 1.3 33 144-176 75-109 (109)
111 KOG3970 Predicted E3 ubiquitin 89.6 0.51 1.1E-05 42.3 4.4 50 145-194 48-106 (299)
112 KOG1940 Zn-finger protein [Gen 86.9 0.27 5.8E-06 45.8 0.9 42 148-190 159-204 (276)
113 COG5175 MOT2 Transcriptional r 86.4 0.44 9.5E-06 45.2 2.0 47 149-195 16-66 (480)
114 KOG0298 DEAD box-containing he 85.5 0.21 4.5E-06 54.9 -0.6 57 136-193 1142-1199(1394)
115 PHA03096 p28-like protein; Pro 85.4 0.38 8.3E-06 45.2 1.2 43 148-190 179-231 (284)
116 COG5220 TFB3 Cdk activating ki 84.6 0.21 4.5E-06 45.1 -0.9 46 147-192 10-63 (314)
117 PF08746 zf-RING-like: RING-li 84.2 0.95 2.1E-05 29.9 2.3 39 150-188 1-43 (43)
118 KOG2932 E3 ubiquitin ligase in 84.1 0.47 1E-05 44.5 1.1 44 147-193 90-134 (389)
119 KOG1812 Predicted E3 ubiquitin 83.7 0.84 1.8E-05 44.8 2.8 49 147-195 146-205 (384)
120 PF07191 zinc-ribbons_6: zinc- 81.4 0.28 6.1E-06 35.9 -1.1 41 147-193 1-41 (70)
121 KOG1952 Transcription factor N 81.0 0.87 1.9E-05 48.1 1.8 48 145-192 189-246 (950)
122 KOG1100 Predicted E3 ubiquitin 80.5 1.2 2.6E-05 39.9 2.3 40 150-194 161-201 (207)
123 KOG4443 Putative transcription 80.4 0.49 1.1E-05 48.6 -0.2 49 12-61 18-69 (694)
124 PHA02825 LAP/PHD finger-like p 80.0 1.8 3.8E-05 36.9 3.0 46 147-193 8-59 (162)
125 PF03854 zf-P11: P-11 zinc fin 79.8 0.72 1.6E-05 31.0 0.5 43 149-194 4-47 (50)
126 KOG4445 Uncharacterized conser 79.8 0.31 6.8E-06 45.5 -1.7 47 147-193 115-186 (368)
127 COG5109 Uncharacterized conser 78.9 1 2.2E-05 42.4 1.3 48 143-190 332-384 (396)
128 KOG3039 Uncharacterized conser 78.3 1.3 2.8E-05 40.3 1.8 34 145-178 41-74 (303)
129 PRK03564 formate dehydrogenase 77.5 2.2 4.8E-05 40.6 3.2 39 11-62 186-234 (309)
130 PF12861 zf-Apc11: Anaphase-pr 77.4 0.8 1.7E-05 34.9 0.2 48 13-63 33-80 (85)
131 PF11793 FANCL_C: FANCL C-term 76.9 1.1 2.4E-05 32.9 0.8 31 13-43 3-38 (70)
132 PHA02862 5L protein; Provision 76.7 1.9 4.1E-05 36.1 2.2 45 149-194 4-54 (156)
133 PF05883 Baculo_RING: Baculovi 76.3 0.74 1.6E-05 38.1 -0.3 33 147-179 26-67 (134)
134 KOG1428 Inhibitor of type V ad 76.0 1.9 4.2E-05 48.3 2.6 49 146-194 3485-3545(3738)
135 PF15446 zf-PHD-like: PHD/FYVE 75.8 1.5 3.3E-05 37.6 1.5 51 14-65 1-62 (175)
136 PF10497 zf-4CXXC_R1: Zinc-fin 75.1 1 2.3E-05 35.8 0.3 50 12-62 7-69 (105)
137 PF14569 zf-UDP: Zinc-binding 74.5 2.6 5.7E-05 31.4 2.2 48 147-194 9-63 (80)
138 PF12906 RINGv: RING-variant d 74.2 1.9 4.1E-05 29.0 1.3 39 150-188 1-47 (47)
139 PF10272 Tmpp129: Putative tra 74.0 1.8 3.9E-05 42.0 1.6 31 165-195 311-353 (358)
140 KOG3268 Predicted E3 ubiquitin 73.6 2 4.3E-05 37.2 1.6 54 141-194 159-229 (234)
141 PF07649 C1_3: C1-like domain; 71.2 1.3 2.9E-05 26.6 0.0 28 14-41 2-29 (30)
142 TIGR01562 FdhE formate dehydro 71.1 4.5 9.8E-05 38.4 3.6 40 11-63 183-233 (305)
143 KOG3579 Predicted E3 ubiquitin 69.3 2 4.4E-05 39.9 0.8 34 146-179 267-304 (352)
144 PF15446 zf-PHD-like: PHD/FYVE 68.8 4.6 9.9E-05 34.8 2.8 22 24-46 121-142 (175)
145 COG3813 Uncharacterized protei 66.3 5 0.00011 29.5 2.1 27 166-195 28-54 (84)
146 KOG3113 Uncharacterized conser 65.7 5.2 0.00011 36.7 2.6 56 145-203 109-168 (293)
147 PRK04023 DNA polymerase II lar 62.4 26 0.00057 38.4 7.4 91 146-241 625-720 (1121)
148 PF10571 UPF0547: Uncharacteri 61.5 5.4 0.00012 23.4 1.3 9 150-158 3-11 (26)
149 KOG1815 Predicted E3 ubiquitin 61.1 4.3 9.3E-05 40.7 1.4 35 145-179 68-103 (444)
150 PF10235 Cript: Microtubule-as 58.5 6.2 0.00014 30.5 1.6 37 147-193 44-80 (90)
151 COG3440 Predicted restriction 57.7 1.7 3.6E-05 40.7 -2.0 47 293-339 22-68 (301)
152 PF04216 FdhE: Protein involve 57.0 6 0.00013 37.2 1.6 41 12-65 172-222 (290)
153 KOG1512 PHD Zn-finger protein 55.7 4 8.6E-05 38.0 0.1 49 12-61 258-315 (381)
154 PF13832 zf-HC5HC2H_2: PHD-zin 55.6 6.2 0.00013 31.2 1.2 30 12-43 55-86 (110)
155 KOG2169 Zn-finger transcriptio 55.0 12 0.00025 39.4 3.4 72 141-215 300-375 (636)
156 KOG2034 Vacuolar sorting prote 54.9 5 0.00011 43.0 0.7 36 144-179 814-851 (911)
157 PF10367 Vps39_2: Vacuolar sor 54.5 11 0.00024 29.3 2.5 35 8-43 74-108 (109)
158 PF06906 DUF1272: Protein of u 54.3 11 0.00025 26.3 2.1 26 167-195 29-54 (57)
159 KOG4323 Polycomb-like PHD Zn-f 53.8 7.7 0.00017 38.8 1.8 51 12-65 83-135 (464)
160 PF10497 zf-4CXXC_R1: Zinc-fin 53.0 12 0.00027 29.7 2.5 28 166-193 37-72 (105)
161 PF03107 C1_2: C1 domain; Int 52.8 15 0.00032 22.0 2.3 28 14-41 2-29 (30)
162 KOG0957 PHD finger protein [Ge 52.7 9.6 0.00021 38.3 2.2 52 14-65 121-181 (707)
163 KOG3899 Uncharacterized conser 51.6 6.5 0.00014 36.8 0.8 31 165-195 325-367 (381)
164 KOG0314 Predicted E3 ubiquitin 50.2 36 0.00079 34.0 5.8 74 141-218 213-289 (448)
165 smart00547 ZnF_RBZ Zinc finger 49.9 7.8 0.00017 22.2 0.7 12 53-64 1-12 (26)
166 KOG4628 Predicted E3 ubiquitin 49.7 11 0.00023 36.5 2.0 48 14-65 231-278 (348)
167 PF02318 FYVE_2: FYVE-type zin 49.1 2.4 5.2E-05 34.4 -2.2 44 147-190 54-102 (118)
168 PF00641 zf-RanBP: Zn-finger i 49.0 7.6 0.00017 23.2 0.6 11 52-62 2-12 (30)
169 PF05605 zf-Di19: Drought indu 48.5 9.3 0.0002 26.2 1.0 39 146-191 1-40 (54)
170 PRK14714 DNA polymerase II lar 48.4 27 0.00058 39.3 4.9 69 147-215 667-742 (1337)
171 PF00130 C1_1: Phorbol esters/ 48.1 14 0.00031 24.9 1.9 34 10-43 9-44 (53)
172 KOG4299 PHD Zn-finger protein 47.6 13 0.00028 38.4 2.2 46 13-62 48-94 (613)
173 PF12773 DZR: Double zinc ribb 47.6 20 0.00043 23.9 2.5 28 167-194 12-41 (50)
174 cd00730 rubredoxin Rubredoxin; 47.0 15 0.00032 25.1 1.8 14 50-64 31-44 (50)
175 COG5243 HRD1 HRD ubiquitin lig 45.9 6.4 0.00014 38.1 -0.2 52 5-65 281-345 (491)
176 KOG1814 Predicted E3 ubiquitin 44.5 3.1 6.7E-05 40.7 -2.5 33 146-178 367-405 (445)
177 KOG0824 Predicted E3 ubiquitin 44.1 14 0.0003 34.9 1.7 49 145-194 103-152 (324)
178 PF13240 zinc_ribbon_2: zinc-r 43.7 9 0.00019 21.7 0.3 22 169-191 1-22 (23)
179 PF06844 DUF1244: Protein of u 43.7 9.1 0.0002 27.6 0.4 12 168-179 11-22 (68)
180 cd00065 FYVE FYVE domain; Zinc 39.7 16 0.00035 24.9 1.2 31 149-179 4-38 (57)
181 TIGR01206 lysW lysine biosynth 39.7 22 0.00047 24.8 1.7 38 14-51 4-46 (54)
182 PLN02189 cellulose synthase 38.6 21 0.00045 39.3 2.3 47 148-194 35-88 (1040)
183 COG5183 SSM4 Protein involved 37.6 48 0.001 35.6 4.6 47 147-193 12-66 (1175)
184 KOG1812 Predicted E3 ubiquitin 37.4 15 0.00032 36.2 0.9 43 145-188 304-351 (384)
185 PLN02436 cellulose synthase A 37.1 23 0.0005 39.1 2.3 46 148-193 37-89 (1094)
186 PF05191 ADK_lid: Adenylate ki 37.0 23 0.00051 22.3 1.5 28 28-62 2-29 (36)
187 KOG4185 Predicted E3 ubiquitin 34.9 6 0.00013 37.1 -2.3 44 148-191 208-265 (296)
188 KOG3053 Uncharacterized conser 34.7 23 0.00049 32.7 1.5 50 146-195 19-84 (293)
189 smart00647 IBR In Between Ring 33.9 15 0.00032 25.6 0.2 15 164-178 45-59 (64)
190 KOG2113 Predicted RNA binding 33.7 26 0.00055 33.3 1.7 47 144-193 340-387 (394)
191 cd00029 C1 Protein kinase C co 33.5 28 0.00062 22.7 1.6 34 10-43 9-44 (50)
192 PLN02638 cellulose synthase A 32.8 28 0.00061 38.5 2.2 46 148-193 18-70 (1079)
193 PF13771 zf-HC5HC2H: PHD-like 32.7 26 0.00056 26.4 1.4 29 13-43 37-67 (90)
194 PF07800 DUF1644: Protein of u 32.6 36 0.00078 29.1 2.3 27 11-37 1-27 (162)
195 PLN02400 cellulose synthase 31.7 28 0.00061 38.5 1.9 47 148-194 37-90 (1085)
196 smart00782 PhnA_Zn_Ribbon PhnA 31.7 25 0.00055 23.7 1.0 10 12-21 7-16 (47)
197 KOG1244 Predicted transcriptio 31.7 9.9 0.00022 35.2 -1.2 52 11-62 223-283 (336)
198 smart00064 FYVE Protein presen 31.3 31 0.00066 24.6 1.5 33 147-179 10-46 (68)
199 PF01363 FYVE: FYVE zinc finge 31.1 23 0.00051 25.3 0.9 32 147-178 9-44 (69)
200 KOG1473 Nucleosome remodeling 30.8 7.5 0.00016 42.7 -2.5 45 14-61 430-477 (1414)
201 PF15616 TerY-C: TerY-C metal 30.6 32 0.00069 28.5 1.7 46 142-194 72-117 (131)
202 TIGR01562 FdhE formate dehydro 30.1 26 0.00056 33.4 1.2 44 147-191 184-233 (305)
203 PF08092 Toxin_22: Magi peptid 30.0 30 0.00066 22.1 1.1 12 3-14 2-13 (38)
204 KOG1632 Uncharacterized PHD Zn 28.4 35 0.00076 33.1 1.8 38 26-64 74-114 (345)
205 PRK11827 hypothetical protein; 28.3 44 0.00096 23.8 1.8 27 13-39 9-38 (60)
206 PF04216 FdhE: Protein involve 28.1 13 0.00028 35.0 -1.3 46 147-193 172-222 (290)
207 cd00350 rubredoxin_like Rubred 27.8 51 0.0011 20.1 1.9 12 53-64 16-27 (33)
208 PF01485 IBR: IBR domain; Int 27.2 26 0.00056 24.2 0.5 30 148-177 19-58 (64)
209 PF04710 Pellino: Pellino; In 27.2 21 0.00045 35.0 0.0 44 147-193 277-339 (416)
210 KOG2068 MOT2 transcription fac 27.1 56 0.0012 31.3 2.8 47 147-194 249-299 (327)
211 PRK11595 DNA utilization prote 26.9 28 0.00062 31.4 0.9 27 13-39 6-32 (227)
212 PLN02195 cellulose synthase A 26.9 47 0.001 36.5 2.5 46 148-193 7-59 (977)
213 PF08274 PhnA_Zn_Ribbon: PhnA 26.8 23 0.00049 21.5 0.1 24 14-37 4-29 (30)
214 smart00109 C1 Protein kinase C 26.2 27 0.00059 22.6 0.4 34 10-43 9-43 (49)
215 smart00132 LIM Zinc-binding do 26.0 68 0.0015 19.3 2.3 28 14-43 1-29 (39)
216 KOG3970 Predicted E3 ubiquitin 25.7 31 0.00067 31.2 0.8 69 12-86 50-124 (299)
217 KOG1829 Uncharacterized conser 25.3 18 0.00038 37.5 -0.9 41 13-61 512-557 (580)
218 PLN02915 cellulose synthase A 25.1 48 0.001 36.7 2.2 48 147-194 15-69 (1044)
219 PHA02929 N1R/p28-like protein; 24.9 27 0.0006 32.0 0.4 50 11-65 173-227 (238)
220 PF13248 zf-ribbon_3: zinc-rib 24.7 32 0.00069 19.9 0.5 9 182-190 16-24 (26)
221 PF00301 Rubredoxin: Rubredoxi 24.4 36 0.00078 22.9 0.8 11 53-63 33-43 (47)
222 KOG2979 Protein involved in DN 24.2 39 0.00084 31.2 1.2 43 147-189 176-220 (262)
223 PRK03564 formate dehydrogenase 24.0 38 0.00082 32.3 1.1 44 146-190 186-234 (309)
224 PF10083 DUF2321: Uncharacteri 23.2 34 0.00075 29.1 0.6 24 167-194 28-51 (158)
225 PF07975 C1_4: TFIIH C1-like d 23.2 69 0.0015 22.0 2.0 25 164-189 26-50 (51)
226 PF14353 CpXC: CpXC protein 22.6 44 0.00096 27.1 1.1 47 148-194 2-50 (128)
227 KOG4718 Non-SMC (structural ma 22.1 37 0.00081 30.4 0.6 46 147-193 181-227 (235)
228 smart00154 ZnF_AN1 AN1-like Zi 22.0 63 0.0014 20.7 1.5 23 150-172 1-25 (39)
229 KOG1734 Predicted RING-contain 21.9 27 0.00058 32.5 -0.3 50 11-63 223-279 (328)
230 cd00607 RNase_Sa RNase_Sa. Rib 21.7 2.7E+02 0.0058 21.8 5.2 26 310-339 60-85 (95)
231 PF09297 zf-NADH-PPase: NADH p 21.4 28 0.0006 21.1 -0.2 25 167-191 3-30 (32)
232 PF10080 DUF2318: Predicted me 21.3 46 0.001 26.3 0.9 31 13-43 36-68 (102)
233 TIGR00622 ssl1 transcription f 20.8 92 0.002 25.1 2.5 40 149-189 57-110 (112)
234 PRK14559 putative protein seri 20.8 67 0.0014 33.9 2.2 37 148-193 2-38 (645)
235 smart00290 ZnF_UBP Ubiquitin C 20.7 57 0.0012 21.5 1.2 23 150-172 2-24 (50)
236 TIGR00570 cdk7 CDK-activating 20.5 39 0.00085 32.2 0.5 50 11-65 2-54 (309)
No 1
>smart00466 SRA SET and RING finger associated domain. Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533. Domain in SET domain containing proteins and in Deinococcus radiodurans DRA1533.
Probab=99.87 E-value=5.4e-23 Score=173.96 Aligned_cols=67 Identities=49% Similarity=0.783 Sum_probs=64.5
Q ss_pred CCCCCCCCCCCCcccCCCCcccceecchhhhhhhcccCCCcCCccCCC----CCCcEEEEecCccccCCCCCceEEEecC
Q 019484 265 PDHFGPILAENDPERNQGVLVGESWEGRLECRQWGVHYPPVAGIAGQS----KCGAQSVVLSGGYEDDEDHGEWFLYTGR 340 (340)
Q Consensus 265 ~~~~G~ip~~~d~~r~~g~~vG~~~~~r~~~~~~g~h~~~~~Gi~~~~----~~ga~si~~sg~y~~d~d~g~~~~ytg~ 340 (340)
.++||+|| |++||++|++|++|+.+|+|+++++||++++ ..||+|||+||||+||+|+||+|+|||+
T Consensus 2 ~~~~G~vp---------Gv~vGd~f~~R~el~~~GlH~~~~~GI~~~~~~~~~~~A~SIV~SggYedd~D~gd~liYtG~ 72 (155)
T smart00466 2 KHIFGPVP---------GVEVGDIFFFRVELCLVGLHRPTQAGIDGLTADEGEPGATSVVSSGGYEDDTDDGDVLIYTGQ 72 (155)
T ss_pred CceEeCCC---------CccCCCEEcchhHhhhhcccCcccCCcccccccCCCccEEEEEECCCccCcccCCCEEEEEcc
Confidence 57899999 9999999999999999999999999999988 6789999999999999999999999996
No 2
>PF02182 SAD_SRA: SAD/SRA domain; InterPro: IPR003105 This domain has been termed SRA-YDG, for SET and Ring finger Associated, and because of the conserved YDG motif within the domain. Further characteristics of the domain are the conservation of up to 13 evenly spaced glycine residues and a VRV(I/V)RG motif. The domain is mainly found in plants and animals and in bacteria. In animals, this domain is associated with the Np95-like ring finger protein and the related gene product Np97, which contains PHD and RING FINGER domains and which is an important determinant in cell cycle progression. Np95 is a chromatin-associated ubiquitin ligase, binding to histones is direct and shows a remarkable preference for histone H3 and its N-terminal tail. The SRA-YDG domain contained in Np95 is indispensable both for the interaction with histones and for chromatin binding in vivo [, ]. In plants the SRA-YDG domain is associated with the SET domain, found in a family of histone methyl transferases, and in bacteria it is found in association with HNH, a non-specific nuclease motif [, ].; GO: 0042393 histone binding; PDB: 2ZO1_B 2ZKD_A 2ZO0_B 2ZKF_A 2ZKG_B 3FDE_A 3F8I_A 2ZO2_B 3F8J_B 2ZKE_A ....
Probab=99.86 E-value=1.6e-22 Score=172.29 Aligned_cols=67 Identities=52% Similarity=0.827 Sum_probs=55.9
Q ss_pred CCCCCCCCCCCCcccCCCCcccceecchhhhhhhcccCCCcCCccCCCCCC---cEEEEecCccccCCCCCceEEEecC
Q 019484 265 PDHFGPILAENDPERNQGVLVGESWEGRLECRQWGVHYPPVAGIAGQSKCG---AQSVVLSGGYEDDEDHGEWFLYTGR 340 (340)
Q Consensus 265 ~~~~G~ip~~~d~~r~~g~~vG~~~~~r~~~~~~g~h~~~~~Gi~~~~~~g---a~si~~sg~y~~d~d~g~~~~ytg~ 340 (340)
.++||+|| |++||+||++|++|+.+|+|+++++||+|....| |+|||+||||+||+|+||+|+|||+
T Consensus 1 ~k~~G~ip---------Gv~vG~~f~~r~~~~~~G~H~~~~~GI~g~~~~g~~~A~SIV~Sg~y~dd~D~gd~l~YtG~ 70 (155)
T PF02182_consen 1 EKRFGHIP---------GVEVGDWFPYRMELSIVGLHGPTQAGIDGMKKEGGPVAYSIVLSGGYEDDEDNGDVLIYTGQ 70 (155)
T ss_dssp -TSSS--T---------T--TT-EESSHHHHHHTTSS--SS-SEEEETTTESEEEEEEEESSSSTTCEECSSEEEEE-S
T ss_pred CCcEeCCC---------CccCccEEhHHHHHhHhccCCCccCCeecccCCCceeeEEEEECCCcccccCCCCEEEEEcC
Confidence 47899999 9999999999999999999999999999999999 9999999999999999999999996
No 3
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=99.38 E-value=1.1e-13 Score=124.16 Aligned_cols=56 Identities=25% Similarity=0.647 Sum_probs=53.5
Q ss_pred CcCCCCCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCC
Q 019484 5 IQLPCNGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCT 61 (340)
Q Consensus 5 ~~~~~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~ 61 (340)
|+|-|-+-..|.+|+...+++++|+||.||++||||||+ |||.+.|+|.|.|--|.
T Consensus 274 yrwqcieck~csicgtsenddqllfcddcdrgyhmycls-ppm~eppegswsc~KOG 329 (336)
T KOG1244|consen 274 YRWQCIECKYCSICGTSENDDQLLFCDDCDRGYHMYCLS-PPMVEPPEGSWSCHLCL 329 (336)
T ss_pred heeeeeecceeccccCcCCCceeEeecccCCceeeEecC-CCcCCCCCCchhHHHHH
Confidence 678899999999999999999999999999999999999 99999999999998885
No 4
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.25 E-value=2.6e-12 Score=85.37 Aligned_cols=39 Identities=36% Similarity=1.042 Sum_probs=30.9
Q ss_pred cccccCCCCCCcccCCCCcccchhhhhhhccCC---CCCCCC
Q 019484 150 CSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGK---KTCAKC 188 (340)
Q Consensus 150 C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~---~~CP~C 188 (340)
|+||+++|.+||+|+|||+||..||.++++... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999987532 579987
No 5
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=99.19 E-value=1.2e-11 Score=87.97 Aligned_cols=63 Identities=30% Similarity=0.619 Sum_probs=36.8
Q ss_pred hhcCCCcccccccCCCCCCccc-CCCCcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHH
Q 019484 142 DIFGGSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAI 210 (340)
Q Consensus 142 ~~~~~~~~C~iC~~~~~~pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i 210 (340)
+.+++.+.|++|.+++..||.+ .|.|.||..||...+.. .||+|+.+... .+++.|..|.+||
T Consensus 2 ~~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~---qD~~~NrqLd~~i 65 (65)
T PF14835_consen 2 ERLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWI---QDIQINRQLDSMI 65 (65)
T ss_dssp HHHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S----SS----HHHHHHH
T ss_pred hHHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHH---HHHHhhhhhhccC
Confidence 4556678999999999999986 89999999999887653 59999999876 4899999999876
No 6
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.17 E-value=2.4e-11 Score=117.57 Aligned_cols=76 Identities=24% Similarity=0.461 Sum_probs=67.2
Q ss_pred hhhhhcCCCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHHhhCC
Q 019484 139 ELSDIFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAKRSNT 218 (340)
Q Consensus 139 ~~~~~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~~~~~ 218 (340)
..+..++..+.|+||+++|..|++++|||+||..||..|+.. ...||.|+..+.. ..++.|..|.++|+.++..+.
T Consensus 18 ~~l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~---~~Lr~N~~L~~iVe~~~~~R~ 93 (397)
T TIGR00599 18 PSLYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQE---SKLRSNWLVSEIVESFKNLRP 93 (397)
T ss_pred ccccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCcccc---ccCccchHHHHHHHHHHHhhH
Confidence 345678889999999999999999999999999999999876 4689999999875 378899999999999987665
No 7
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.14 E-value=4e-11 Score=86.66 Aligned_cols=62 Identities=19% Similarity=0.322 Sum_probs=54.8
Q ss_pred CcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHH
Q 019484 147 SLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRM 212 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~ 212 (340)
++.|+||.+++.+||+++|||+||+.||.+|+.. ...||.|+..+.. ..+..|..|++.++.
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~---~~l~~~~~l~~~i~~ 62 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTH---EDLIPNLALKSAIQE 62 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCCh---hhceeCHHHHHHHHh
Confidence 4689999999999999999999999999999987 6789999999865 478888888887763
No 8
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=99.11 E-value=2.5e-11 Score=122.23 Aligned_cols=53 Identities=28% Similarity=0.619 Sum_probs=48.9
Q ss_pred CCCCCcccccccCCCCCCceeeeCCCCCC-cccCCCCCCCCCCCCCCCccCCCCC
Q 019484 8 PCNGDGMCMRCKETPVEEEQLCCKTCATP-WHVACLVRPPESLASTLLWECPDCT 61 (340)
Q Consensus 8 ~~~~~~~c~~c~~~~~~~~~l~c~~c~~~-~h~~cl~~p~~~~~p~~~w~c~~c~ 61 (340)
+=.+-..|.+|...+.++.|||||.|+.+ ||+|||+ |+|.+||.+.|||++|.
T Consensus 211 ~~~E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLD-Pdl~eiP~~eWYC~NC~ 264 (1134)
T KOG0825|consen 211 LSQEEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLD-PDLSESPVNEWYCTNCS 264 (1134)
T ss_pred cccccccceeeccCChHHhheeecccccceeeccccC-cccccccccceecCcch
Confidence 34455679999999999999999999999 9999999 99999999999999995
No 9
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.11 E-value=7e-11 Score=88.27 Aligned_cols=70 Identities=21% Similarity=0.300 Sum_probs=58.7
Q ss_pred CCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHHhhCC
Q 019484 146 GSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAKRSNT 218 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~~~~~ 218 (340)
+.|.|+|+.++|.+||.+++||+|++.+|..|+......||.|+.++.. ..+..|..|++.|+.+...+.
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~---~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE---SDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG---GGSEE-HHHHHHHHHHHHHCT
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc---ccceECHHHHHHHHHHHHHcc
Confidence 5789999999999999999999999999999999878899999999987 388999999999999987654
No 10
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.09 E-value=9e-11 Score=97.97 Aligned_cols=32 Identities=28% Similarity=0.623 Sum_probs=28.4
Q ss_pred CcccCCCCCCCCCCCCCCCccCCCCCCCCcccc
Q 019484 36 PWHVACLVRPPESLASTLLWECPDCTGDAAVAE 68 (340)
Q Consensus 36 ~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~~~p 68 (340)
||||+||+ |||+.||+|+|+||.|.......+
T Consensus 1 g~H~~CL~-Ppl~~~P~g~W~Cp~C~~~~~~~~ 32 (148)
T cd04718 1 GFHLCCLR-PPLKEVPEGDWICPFCEVEKSGQS 32 (148)
T ss_pred CcccccCC-CCCCCCCCCCcCCCCCcCCCCCCc
Confidence 79999999 999999999999999987766333
No 11
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.08 E-value=7.6e-11 Score=102.69 Aligned_cols=52 Identities=33% Similarity=0.857 Sum_probs=44.8
Q ss_pred hcCCCcccccccCCCCCCcccCCCCcccchhhhhhhcc---------------CCCCCCCCCcccCC
Q 019484 143 IFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGL---------------GKKTCAKCRCIIPS 194 (340)
Q Consensus 143 ~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~---------------~~~~CP~Cr~~~~~ 194 (340)
...+++.|+||++.+.+|++++|||.||+.||.+|+.. ....||.||..+..
T Consensus 14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 44567999999999999999999999999999999741 24689999998875
No 12
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=99.00 E-value=7.6e-11 Score=109.02 Aligned_cols=75 Identities=24% Similarity=0.580 Sum_probs=65.2
Q ss_pred hhhhhcCCCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHHhhC
Q 019484 139 ELSDIFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAKRSN 217 (340)
Q Consensus 139 ~~~~~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~~~~ 217 (340)
..+..+...+.|.||+++|..|+++||+|+||..||.+++.. +..||.|+..+.. ..++.|+.|.++|+.+.-.+
T Consensus 15 pslk~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~E---s~Lr~n~il~Eiv~S~~~~R 89 (442)
T KOG0287|consen 15 PSLKTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTE---SDLRNNRILDEIVKSLNFAR 89 (442)
T ss_pred chhhhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccch---hhhhhhhHHHHHHHHHHHHH
Confidence 345667778999999999999999999999999999999986 6789999999987 47888999999998775544
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.95 E-value=2.6e-10 Score=74.54 Aligned_cols=38 Identities=39% Similarity=1.140 Sum_probs=33.4
Q ss_pred cccccCCCCCC-cccCCCCcccchhhhhhhccCCCCCCCC
Q 019484 150 CSFCMQLPERP-VTTPCGHNFCLKCFQKWIGLGKKTCAKC 188 (340)
Q Consensus 150 C~iC~~~~~~p-v~l~CgH~FC~~Ci~~~~~~~~~~CP~C 188 (340)
|+||++.+.+| +.++|||+||..|+.+|++. ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999988 7899987
No 14
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.93 E-value=2.4e-10 Score=79.13 Aligned_cols=47 Identities=28% Similarity=0.793 Sum_probs=42.6
Q ss_pred ccccccCCCCCCceeeeCCCCCCcccCCCCCCCCC--CCCCCCccCCCCC
Q 019484 14 MCMRCKETPVEEEQLCCKTCATPWHVACLVRPPES--LASTLLWECPDCT 61 (340)
Q Consensus 14 ~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~--~~p~~~w~c~~c~ 61 (340)
+|.+|++....+.+|.||.|++.||+.|+. |++. .++.+.|+|+.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~-~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVG-PPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTST-SSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCC-CChhhccCCCCcEECcCCc
Confidence 588999999999999999999999999999 8888 5566799999985
No 15
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.86 E-value=8.9e-10 Score=76.05 Aligned_cols=46 Identities=37% Similarity=0.861 Sum_probs=40.3
Q ss_pred CcccccccCCCCCCcccCCCCc-ccchhhhhhhccCCCCCCCCCcccC
Q 019484 147 SLNCSFCMQLPERPVTTPCGHN-FCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
+..|.||++...+++.++|||. ||..|+.+|+.. ...||+||+++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence 5679999999999999999999 999999999874 789999999876
No 16
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.3e-09 Score=95.18 Aligned_cols=50 Identities=36% Similarity=1.021 Sum_probs=44.7
Q ss_pred CCCcccccccCCCCCCcccCCCCcccchhhhhhhcc--CCCCCCCCCcccCC
Q 019484 145 GGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGL--GKKTCAKCRCIIPS 194 (340)
Q Consensus 145 ~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~--~~~~CP~Cr~~~~~ 194 (340)
...|.|.||++.-++||++.|||.||+.||.+|+.. ....||+|+..+..
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 357899999999999999999999999999999873 35689999998875
No 17
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.81 E-value=1.9e-09 Score=71.10 Aligned_cols=39 Identities=44% Similarity=1.216 Sum_probs=36.0
Q ss_pred cccccCCCCCCc-ccCCCCcccchhhhhhhc-cCCCCCCCC
Q 019484 150 CSFCMQLPERPV-TTPCGHNFCLKCFQKWIG-LGKKTCAKC 188 (340)
Q Consensus 150 C~iC~~~~~~pv-~l~CgH~FC~~Ci~~~~~-~~~~~CP~C 188 (340)
|+||++.+..|+ +++|||.||..|+.+|+. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 789999999999999988 557889987
No 18
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.81 E-value=1.6e-09 Score=98.39 Aligned_cols=74 Identities=24% Similarity=0.416 Sum_probs=60.5
Q ss_pred hhhhcCCCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHHhhC
Q 019484 140 LSDIFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAKRSN 217 (340)
Q Consensus 140 ~~~~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~~~~ 217 (340)
.+..|...+.|.||.+.|..|+.++|||+||..||.+++.. ...||+||..... ..++.+..+..+++.+...+
T Consensus 18 SL~~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~e---srlr~~s~~~ei~es~~~~r 91 (391)
T COG5432 18 SLKGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCE---SRLRGSSGSREINESHARNR 91 (391)
T ss_pred chhcchhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHh---hhcccchhHHHHHHhhhhcc
Confidence 35566677899999999999999999999999999999987 7789999998765 25666777777776665443
No 19
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=3e-09 Score=97.05 Aligned_cols=49 Identities=35% Similarity=0.898 Sum_probs=44.6
Q ss_pred CCCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 145 GGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 145 ~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
+....|.+|++...+|..+||||.||+.||..|... ...||.||..++.
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~p 285 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQP 285 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCC
Confidence 456899999999999999999999999999999987 5679999998875
No 20
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.78 E-value=1.2e-09 Score=73.33 Aligned_cols=40 Identities=35% Similarity=1.010 Sum_probs=34.0
Q ss_pred ccccccCCCC---CCcccCCCCcccchhhhhhhccCCCCCCCCC
Q 019484 149 NCSFCMQLPE---RPVTTPCGHNFCLKCFQKWIGLGKKTCAKCR 189 (340)
Q Consensus 149 ~C~iC~~~~~---~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr 189 (340)
.|+||++.+. ..+.++|||.||..||.+|+.. +..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 5999999985 4566799999999999999987 57999997
No 21
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=3.8e-09 Score=89.96 Aligned_cols=49 Identities=35% Similarity=0.876 Sum_probs=41.9
Q ss_pred CCcccccccCCCCC--CcccCCCCcccchhhhhhhccCCCCCCCCCcccCCC
Q 019484 146 GSLNCSFCMQLPER--PVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSK 195 (340)
Q Consensus 146 ~~~~C~iC~~~~~~--pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 195 (340)
..+.|||||+.+.+ ||.+.|||.||..||+..++. ...||+|++.+..+
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHK 180 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchh
Confidence 34899999999984 566899999999999999887 67899999877653
No 22
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.69 E-value=5.3e-09 Score=104.27 Aligned_cols=53 Identities=26% Similarity=0.820 Sum_probs=46.6
Q ss_pred CcccccccCCCCCCceeeeCCCCCCcccCCCCCCC--CCCCCCCCccCCCCCCCCc
Q 019484 12 DGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPP--ESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~--~~~~p~~~w~c~~c~~~~~ 65 (340)
..+|..|.+...-..+++||+|++.||++||. || .+.+|.|.|||+.|.....
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLe-PPl~~eniP~g~W~C~ec~~k~~ 307 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLE-PPLEPENIPPGSWFCPECKIKSV 307 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcC-CCCCcccCCCCccccCCCeeeee
Confidence 45899999987667779999999999999999 99 7789999999999965443
No 23
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.69 E-value=1.1e-08 Score=92.77 Aligned_cols=48 Identities=31% Similarity=0.779 Sum_probs=40.3
Q ss_pred CCcccccccCCCCCC--------cccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 146 GSLNCSFCMQLPERP--------VTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 146 ~~~~C~iC~~~~~~p--------v~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
.+..|+||++.+.++ +.++|+|.||..||.+|+.. ..+||+||..+..
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~~ 228 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFIS 228 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEeeE
Confidence 467899999987653 45689999999999999876 6799999998763
No 24
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.67 E-value=1.1e-08 Score=67.79 Aligned_cols=44 Identities=43% Similarity=1.059 Sum_probs=37.9
Q ss_pred ccccccCCCCCCcccC-CCCcccchhhhhhhccCCCCCCCCCccc
Q 019484 149 NCSFCMQLPERPVTTP-CGHNFCLKCFQKWIGLGKKTCAKCRCII 192 (340)
Q Consensus 149 ~C~iC~~~~~~pv~l~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 192 (340)
.|+||++.+..++.+. |||.||..|+..|+..+...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999998777774 9999999999999887677899998753
No 25
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2e-08 Score=93.44 Aligned_cols=74 Identities=28% Similarity=0.636 Sum_probs=63.1
Q ss_pred hhhhhcCCCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHHhhCC
Q 019484 139 ELSDIFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAKRSNT 218 (340)
Q Consensus 139 ~~~~~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~~~~~ 218 (340)
.....+.+.+.|+||++.|..|++++|||+||..|+..++. ....||.||. ... .+..|..+.++++.++....
T Consensus 5 ~~~~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~----~~~~n~~l~~~~~~~~~~~~ 78 (386)
T KOG2177|consen 5 ALLEVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR----NLRPNVLLANLVERLRQLRL 78 (386)
T ss_pred hhhhhccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh----ccCccHHHHHHHHHHHhcCC
Confidence 34556678999999999999998899999999999999887 5789999996 333 66689999999999987765
No 26
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.64 E-value=7.1e-09 Score=68.94 Aligned_cols=36 Identities=36% Similarity=0.931 Sum_probs=22.6
Q ss_pred cccccCCCCC----CcccCCCCcccchhhhhhhccC---CCCCC
Q 019484 150 CSFCMQLPER----PVTTPCGHNFCLKCFQKWIGLG---KKTCA 186 (340)
Q Consensus 150 C~iC~~~~~~----pv~l~CgH~FC~~Ci~~~~~~~---~~~CP 186 (340)
||||++ +.. |+.|+|||+||..||.++..++ .+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 887 9999999999999999988743 56776
No 27
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.55 E-value=3.7e-08 Score=63.01 Aligned_cols=39 Identities=44% Similarity=1.245 Sum_probs=35.3
Q ss_pred cccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCC
Q 019484 150 CSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKC 188 (340)
Q Consensus 150 C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~C 188 (340)
|+||++....++.++|||.||..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999999999999999999999999988556789987
No 29
>PHA02926 zinc finger-like protein; Provisional
Probab=98.54 E-value=4.4e-08 Score=86.49 Aligned_cols=53 Identities=21% Similarity=0.610 Sum_probs=41.3
Q ss_pred hhcCCCcccccccCCCCC---------CcccCCCCcccchhhhhhhccC-----CCCCCCCCcccCC
Q 019484 142 DIFGGSLNCSFCMQLPER---------PVTTPCGHNFCLKCFQKWIGLG-----KKTCAKCRCIIPS 194 (340)
Q Consensus 142 ~~~~~~~~C~iC~~~~~~---------pv~l~CgH~FC~~Ci~~~~~~~-----~~~CP~Cr~~~~~ 194 (340)
-...++..|+||++...+ .+..+|+|.||..||..|.... ...||+||..+..
T Consensus 165 ~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 165 YRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred HhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 344568999999997643 3455999999999999998742 3569999998763
No 30
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.52 E-value=5.2e-08 Score=65.35 Aligned_cols=41 Identities=39% Similarity=0.879 Sum_probs=34.7
Q ss_pred ccccccCCC---CCCcccCCCCcccchhhhhhhccCCCCCCCCCc
Q 019484 149 NCSFCMQLP---ERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRC 190 (340)
Q Consensus 149 ~C~iC~~~~---~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~ 190 (340)
.|+||+..+ ..|++++|||+||..|+.... .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 389999998 356778999999999999988 34679999984
No 31
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.50 E-value=3.6e-08 Score=89.50 Aligned_cols=55 Identities=24% Similarity=0.521 Sum_probs=50.1
Q ss_pred CCcCCCCCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCC-CCC
Q 019484 4 VIQLPCNGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECP-DCT 61 (340)
Q Consensus 4 ~~~~~~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~-~c~ 61 (340)
-|.|-|-+...|.+|.....++++|+||.||+|||++|.- |..+|.|.|.|. .|.
T Consensus 306 TY~W~C~~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVG---L~~lP~G~WICD~~C~ 361 (381)
T KOG1512|consen 306 TYFWKCSSCELCRICLGPVIESEHLFCDVCDRGPHTLCVG---LQDLPRGEWICDMRCR 361 (381)
T ss_pred hcchhhcccHhhhccCCcccchheeccccccCCCCccccc---cccccCccchhhhHHH
Confidence 3568899999999999999999999999999999999987 889999999998 353
No 32
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=9.5e-08 Score=97.67 Aligned_cols=59 Identities=29% Similarity=0.571 Sum_probs=53.9
Q ss_pred chhhhhhcCCCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCCC
Q 019484 137 ENELSDIFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSK 195 (340)
Q Consensus 137 ~~~~~~~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 195 (340)
....+..+...++||+|..-+.+.|++.|||.||..|+.+.+..+...||.|...|...
T Consensus 633 L~EElk~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 633 LAEELKEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAN 691 (698)
T ss_pred HHHHHHHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 45678888999999999999999999999999999999999888889999999999864
No 33
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=2.3e-08 Score=93.57 Aligned_cols=76 Identities=30% Similarity=0.554 Sum_probs=62.4
Q ss_pred hhhhhcCCCcccccccCCCCCCccc-CCCCcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHHhh
Q 019484 139 ELSDIFGGSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAKRS 216 (340)
Q Consensus 139 ~~~~~~~~~~~C~iC~~~~~~pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~~~ 216 (340)
..+..+..++.|+||+++++..+++ .|+|.||..||.+.++.+...||.||+.+..+ ..++++..+..||..+...
T Consensus 35 ~~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk--rsLr~Dp~fdaLis~i~~s 111 (381)
T KOG0311|consen 35 VDLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK--RSLRIDPNFDALISKIYPS 111 (381)
T ss_pred ecHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc--ccCCCCccHHHHHHHHhcc
Confidence 4566778899999999999999888 79999999999999998899999999988654 2666666666676655433
No 34
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=8.5e-08 Score=88.02 Aligned_cols=47 Identities=38% Similarity=0.694 Sum_probs=43.4
Q ss_pred cccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 148 LNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 148 ~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
-.|+||+....-||.+.|+|.||+.||+.....+...|++||.+|..
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 36999999999999999999999999999877778889999999986
No 35
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=98.41 E-value=6.6e-08 Score=93.79 Aligned_cols=48 Identities=29% Similarity=0.754 Sum_probs=45.2
Q ss_pred CcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCC----ccCCCC
Q 019484 12 DGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLL----WECPDC 60 (340)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~----w~c~~c 60 (340)
...|-+|++..+...++.||+|..-||+.||+ ||||.+|+.. |+|..|
T Consensus 544 ~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~-PPLTR~Pkk~kn~gWqCsEC 595 (707)
T KOG0957|consen 544 NYSCGICKKSTDQHLLTQCDTCHLHYHLGCLS-PPLTRLPKKNKNFGWQCSEC 595 (707)
T ss_pred ceeeeeeccchhhHHHhhcchhhceeeccccC-CccccCcccccCcceeeccc
Confidence 45699999999999999999999999999999 9999999875 999999
No 36
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=98.40 E-value=4.1e-08 Score=108.27 Aligned_cols=52 Identities=29% Similarity=0.777 Sum_probs=49.5
Q ss_pred CcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCC
Q 019484 12 DGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDA 64 (340)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~ 64 (340)
...|.+|+....++.+++||.|+.+||++|+. |.+..+|.|+|+||.|....
T Consensus 1108 ~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~r-p~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1108 NALCKVCRRKKQDEKMLLCDECLSGFHLFCLR-PALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred hhhhhhhhhcccchhhhhhHhhhhhHHHHhhh-hhhccCCcCCccCCccchhh
Confidence 56799999999999999999999999999999 99999999999999998766
No 37
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.37 E-value=1.5e-07 Score=94.22 Aligned_cols=55 Identities=29% Similarity=0.689 Sum_probs=52.5
Q ss_pred CCCCCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCC
Q 019484 7 LPCNGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTG 62 (340)
Q Consensus 7 ~~~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~ 62 (340)
|.|-+..+|..|+...++..+|+|+.||-.||.||+. ||++.||.|.|+|++|.-
T Consensus 63 WrC~~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~-P~~~~v~sg~~~ckk~~~ 117 (694)
T KOG4443|consen 63 WRCPSCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQK-PPNDKVPSGPWLCKKCTR 117 (694)
T ss_pred cccCCceeeeeccccCCcccccccccccccccccccC-CccccccCcccccHHHHh
Confidence 7788999999999999999999999999999999999 999999999999999953
No 38
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=2e-07 Score=84.26 Aligned_cols=50 Identities=36% Similarity=0.873 Sum_probs=43.3
Q ss_pred CCCcccccccCCCCCCcccCCCCcccchhhhh-hhccCCCCCCCCCcccCC
Q 019484 145 GGSLNCSFCMQLPERPVTTPCGHNFCLKCFQK-WIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 145 ~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~-~~~~~~~~CP~Cr~~~~~ 194 (340)
..++.|.||++....|+.++|||.||..||.. |..+....||+||+....
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 34789999999999999999999999999999 766645569999987654
No 39
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=3.3e-07 Score=89.84 Aligned_cols=49 Identities=37% Similarity=0.911 Sum_probs=43.6
Q ss_pred CcccccccCCCCCCcccCCCCcccchhhhhhhcc----CCCCCCCCCcccCCC
Q 019484 147 SLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGL----GKKTCAKCRCIIPSK 195 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~----~~~~CP~Cr~~~~~~ 195 (340)
+..||||++...-|+.+.|||.||..||..+|.. +...||+|+..+..+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK 238 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence 7899999999999999999999999999998764 346999999988764
No 40
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.25 E-value=3.6e-07 Score=85.06 Aligned_cols=73 Identities=22% Similarity=0.405 Sum_probs=61.7
Q ss_pred hhhhcCCCcccccccCCCCCCccc-CCCCcccchhhhhhhccCCCCCCCCCcccCCC-CCCCCCccHHHHHHHHHH
Q 019484 140 LSDIFGGSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSK-MAGQPRINSTLVAAIRMA 213 (340)
Q Consensus 140 ~~~~~~~~~~C~iC~~~~~~pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~-~~~~~~~n~~l~~~i~~~ 213 (340)
.+..+....+|.+|..+|.++.++ .|-|+||.+||.+++.. ...||.|...+... +...++.+..|+.++-.+
T Consensus 8 k~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 8 KLTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred hhhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 345666788999999999999887 79999999999999987 78999999988764 356778888888887655
No 41
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.23 E-value=7.1e-07 Score=66.56 Aligned_cols=40 Identities=40% Similarity=1.106 Sum_probs=32.3
Q ss_pred ccccccCCCCCC------------cc-cCCCCcccchhhhhhhccCCCCCCCCC
Q 019484 149 NCSFCMQLPERP------------VT-TPCGHNFCLKCFQKWIGLGKKTCAKCR 189 (340)
Q Consensus 149 ~C~iC~~~~~~p------------v~-l~CgH~FC~~Ci~~~~~~~~~~CP~Cr 189 (340)
.|.||++.|.++ +. .+|||.|+..||.+|+.. ..+||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 499999999432 33 389999999999999987 56999997
No 42
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=3.6e-06 Score=79.34 Aligned_cols=46 Identities=33% Similarity=0.855 Sum_probs=39.4
Q ss_pred CCcccccccCCCC-C------------CcccCCCCcccchhhhhhhccCCCCCCCCCccc
Q 019484 146 GSLNCSFCMQLPE-R------------PVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCII 192 (340)
Q Consensus 146 ~~~~C~iC~~~~~-~------------pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 192 (340)
.+-.|.||++-+. . |..+||||.|...|++.|+++ ..+||+||.++
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~ 344 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV 344 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence 4678999999743 2 477999999999999999986 78999999984
No 43
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.06 E-value=7.5e-06 Score=76.71 Aligned_cols=49 Identities=22% Similarity=0.614 Sum_probs=38.5
Q ss_pred CcccccccCC-CCCCc---cc-CCCCcccchhhhhhhccCCCCCCCCCcccCCC
Q 019484 147 SLNCSFCMQL-PERPV---TT-PCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSK 195 (340)
Q Consensus 147 ~~~C~iC~~~-~~~pv---~l-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 195 (340)
+..||+|+.. +..|- .+ +|||.||..|+...+..+...||.|+..+...
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence 4579999983 33442 23 79999999999998877778999999988653
No 44
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=98.00 E-value=2.5e-06 Score=73.92 Aligned_cols=59 Identities=27% Similarity=0.519 Sum_probs=47.7
Q ss_pred CcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHH
Q 019484 147 SLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAI 210 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i 210 (340)
.|.|.||...+..||.+.|||.||..|..+..+. ...|-+|.+.... .+.+...|+.|+
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~G----~f~V~~d~~kmL 254 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKATYG----RFWVVSDLQKML 254 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhhcc----ceeHHhhHHHHH
Confidence 5899999999999999999999999999988776 5789999987765 334444444444
No 45
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=3.2e-06 Score=82.27 Aligned_cols=70 Identities=30% Similarity=0.601 Sum_probs=53.2
Q ss_pred CCCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCCCCCC-CCC-ccHHHHHHHHHHHh
Q 019484 145 GGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAG-QPR-INSTLVAAIRMAKR 215 (340)
Q Consensus 145 ~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~-~~~-~n~~l~~~i~~~~~ 215 (340)
..+|.|.||+..+..||+++|||+||..||.+.+.. ...||.||..+...... ... .|..+..++..|+.
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~ 153 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLE 153 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhh
Confidence 568999999999999999999999999999997775 67999999998752211 111 24445566665544
No 46
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.90 E-value=3.3e-06 Score=87.05 Aligned_cols=50 Identities=30% Similarity=0.689 Sum_probs=44.7
Q ss_pred CCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCC
Q 019484 11 GDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDA 64 (340)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~ 64 (340)
+...|.+|..+. .+|+||+|...||++||. |||+.+|.++|.|+.|..+.
T Consensus 46 ~~e~c~ic~~~g---~~l~c~tC~~s~h~~cl~-~pl~~~p~~~~~c~Rc~~p~ 95 (696)
T KOG0383|consen 46 EQEACRICADGG---ELLWCDTCPASFHASCLG-PPLTPQPNGEFICPRCFCPK 95 (696)
T ss_pred hhhhhhhhcCCC---cEEEeccccHHHHHHccC-CCCCcCCccceeeeeeccCC
Confidence 356899999985 899999999999999999 99999999999999995443
No 47
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=5.3e-06 Score=78.87 Aligned_cols=47 Identities=26% Similarity=0.732 Sum_probs=40.1
Q ss_pred cccccccCCCCC---CcccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 148 LNCSFCMQLPER---PVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 148 ~~C~iC~~~~~~---pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
.+|.||++.|.. -..|||.|.|+..||.+|+.+....||+|+..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 489999999983 35579999999999999998755679999997764
No 48
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.84 E-value=8.9e-06 Score=61.70 Aligned_cols=34 Identities=35% Similarity=0.862 Sum_probs=28.3
Q ss_pred Cccc-CCCCcccchhhhhhhcc--CCCCCCCCCcccC
Q 019484 160 PVTT-PCGHNFCLKCFQKWIGL--GKKTCAKCRCIIP 193 (340)
Q Consensus 160 pv~l-~CgH~FC~~Ci~~~~~~--~~~~CP~Cr~~~~ 193 (340)
|+.+ .|+|.|...||.+|+.. .+..||+||+++.
T Consensus 46 plv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 46 PLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 4444 89999999999999984 3579999999765
No 49
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=1e-05 Score=74.30 Aligned_cols=47 Identities=32% Similarity=0.621 Sum_probs=42.3
Q ss_pred CcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 147 SLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
.+.|-||...|..||.+.|+|+||..|..+.++. ...|.+|.+.+..
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTHG 287 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccccc-CCcceeccccccc
Confidence 3679999999999999999999999999988876 5789999988875
No 50
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=1.7e-05 Score=73.04 Aligned_cols=49 Identities=31% Similarity=0.739 Sum_probs=41.1
Q ss_pred CCCcccccccCCCCC---CcccCCCCcccchhhhhhhccCCCCCCCCCcccC
Q 019484 145 GGSLNCSFCMQLPER---PVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 145 ~~~~~C~iC~~~~~~---pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
..-..|.||+..|.+ -+.|||.|.|+..|+.+|+..-...||+||.+++
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 345789999998873 3567999999999999998744678999999886
No 51
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.67 E-value=2.6e-05 Score=83.64 Aligned_cols=55 Identities=20% Similarity=0.481 Sum_probs=48.9
Q ss_pred CCCCCcccccccCCCCC--CceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 8 PCNGDGMCMRCKETPVE--EEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 8 ~~~~~~~c~~c~~~~~~--~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
.-+.|.+|.||.+..-. ..+|.||.|+..+|+.|-..|+ +|+|.|+|-.|...+.
T Consensus 215 ~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~---ipeg~WlCr~Cl~s~~ 271 (1051)
T KOG0955|consen 215 LLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPF---IPEGQWLCRRCLQSPQ 271 (1051)
T ss_pred ccCCCccceeecccccCCCceEEEcCCCcchhhhhccCCCC---CCCCcEeehhhccCcC
Confidence 35789999999998777 8999999999999999999555 8999999999987665
No 52
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=1.7e-05 Score=81.24 Aligned_cols=47 Identities=30% Similarity=0.817 Sum_probs=42.1
Q ss_pred CCcccccccCCCCC-----CcccCCCCcccchhhhhhhccCCCCCCCCCcccC
Q 019484 146 GSLNCSFCMQLPER-----PVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 146 ~~~~C~iC~~~~~~-----pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
....|+||.+.+.. |..++|+|.||..|+.+|+++ ..+||.||..+.
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVLY 341 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhhh
Confidence 46689999999998 788999999999999999987 789999999544
No 53
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=1.2e-05 Score=55.20 Aligned_cols=45 Identities=29% Similarity=0.673 Sum_probs=40.1
Q ss_pred ccccccCCCCCCcccCCCCc-ccchhhhhhhccCCCCCCCCCcccC
Q 019484 149 NCSFCMQLPERPVTTPCGHN-FCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 149 ~C~iC~~~~~~pv~l~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
.|.||.+...+.|...|||. .|+.|-.+.++.....||+||+++.
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 59999999999999999998 6999999887756789999999875
No 54
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.56 E-value=0.00014 Score=66.91 Aligned_cols=70 Identities=23% Similarity=0.434 Sum_probs=54.2
Q ss_pred CcccccccCCCCCCccc-CCCCcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHHhhCC
Q 019484 147 SLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAKRSNT 218 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~~~~~ 218 (340)
.|.|+.|..++..|+.+ -|+|.||..||...+-...+.||.|...-. .+..+..++.....|+.+.+...
T Consensus 274 ~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdv--lld~l~pD~dk~~EvE~~lkkq~ 344 (427)
T COG5222 274 SLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDV--LLDGLTPDIDKKLEVEKALKKQR 344 (427)
T ss_pred cccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccc--hhhccCccHHHHHHHHHHHHHHH
Confidence 38999999999999999 699999999999877666789999965211 12466777777777777766433
No 55
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.51 E-value=4.2e-05 Score=54.10 Aligned_cols=42 Identities=36% Similarity=0.656 Sum_probs=30.4
Q ss_pred CCcccccccCCCCCCccc-CCCCcccchhhhhhhc-cCCCCCCC
Q 019484 146 GSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIG-LGKKTCAK 187 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv~l-~CgH~FC~~Ci~~~~~-~~~~~CP~ 187 (340)
..+.|||.+..|.+||.. .|||+|.+..|..++. .+...||.
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 468999999999999885 8999999999999994 34679998
No 56
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.41 E-value=0.00018 Score=70.69 Aligned_cols=51 Identities=31% Similarity=0.783 Sum_probs=46.2
Q ss_pred hcCCCcccccccCCCCCCccc-CCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 143 IFGGSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 143 ~~~~~~~C~iC~~~~~~pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
.+++++.|++|...+.+|+.+ .|||.||..|+..|... +..||.|+..+..
T Consensus 17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~ 68 (391)
T KOG0297|consen 17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQ 68 (391)
T ss_pred CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccch
Confidence 367889999999999999995 99999999999999987 7899999887765
No 57
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.39 E-value=6.6e-05 Score=70.21 Aligned_cols=39 Identities=21% Similarity=0.602 Sum_probs=34.3
Q ss_pred CCCceeeeCC--CC-CCcccCCCCCCCCCCCCCCCccCCCCCCCC
Q 019484 23 VEEEQLCCKT--CA-TPWHVACLVRPPESLASTLLWECPDCTGDA 64 (340)
Q Consensus 23 ~~~~~l~c~~--c~-~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~ 64 (340)
.-.+|.-||. |+ ..||+.|.- |+..|+|.||||.|....
T Consensus 228 syg~Mi~CDn~~C~~eWFH~~CVG---L~~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 228 SYGKMIGCDNPGCPIEWFHFTCVG---LKTKPKGKWYCPRCKAEN 269 (274)
T ss_pred ccccccccCCCCCCcceEEEeccc---cccCCCCcccchhhhhhh
Confidence 3469999999 99 999999988 788999999999997543
No 58
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0002 Score=65.38 Aligned_cols=48 Identities=25% Similarity=0.558 Sum_probs=40.9
Q ss_pred CCcccccccCCCCCCccc-CCCCcccchhhhhhhc-cCCCCCCCCCcccC
Q 019484 146 GSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIG-LGKKTCAKCRCIIP 193 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv~l-~CgH~FC~~Ci~~~~~-~~~~~CP~Cr~~~~ 193 (340)
...+|++|.+....|.+. +|||.||+.||..... ...++||.|..+..
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 467899999999999887 6999999999998654 33689999988766
No 59
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.90 E-value=0.00043 Score=62.56 Aligned_cols=41 Identities=22% Similarity=0.690 Sum_probs=33.2
Q ss_pred cccCCCCCCceeeeCC--CCC-CcccCCCCCCCCCCCCCCCccCCCCC
Q 019484 17 RCKETPVEEEQLCCKT--CAT-PWHVACLVRPPESLASTLLWECPDCT 61 (340)
Q Consensus 17 ~c~~~~~~~~~l~c~~--c~~-~~h~~cl~~p~~~~~p~~~w~c~~c~ 61 (340)
.|++.+ -.+|.-||. |.+ .||+.|.- |...|+|.||||+|.
T Consensus 225 fCqqvS-yGqMVaCDn~nCkrEWFH~~CVG---Lk~pPKG~WYC~eCk 268 (271)
T COG5034 225 FCQQVS-YGQMVACDNANCKREWFHLECVG---LKEPPKGKWYCPECK 268 (271)
T ss_pred Eecccc-cccceecCCCCCchhheeccccc---cCCCCCCcEeCHHhH
Confidence 566654 468899997 665 46999987 789999999999995
No 60
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.00054 Score=65.59 Aligned_cols=50 Identities=30% Similarity=0.764 Sum_probs=40.4
Q ss_pred CCCcccccccCCCCCCc-----c---cCCCCcccchhhhhhhccC------CCCCCCCCcccCC
Q 019484 145 GGSLNCSFCMQLPERPV-----T---TPCGHNFCLKCFQKWIGLG------KKTCAKCRCIIPS 194 (340)
Q Consensus 145 ~~~~~C~iC~~~~~~pv-----~---l~CgH~FC~~Ci~~~~~~~------~~~CP~Cr~~~~~ 194 (340)
..+..|.||++...+.+ . .+|.|.||..||.+|.... ...||.||.....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 34789999999888776 3 4799999999999997422 4799999987654
No 61
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.001 Score=62.88 Aligned_cols=67 Identities=28% Similarity=0.526 Sum_probs=56.1
Q ss_pred CcccccccCCCC------CCcccCCCCcccchhhhhhhccCCCCCCCCCcc--cCCCCCCCCCccHHHHHHHHHH
Q 019484 147 SLNCSFCMQLPE------RPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCI--IPSKMAGQPRINSTLVAAIRMA 213 (340)
Q Consensus 147 ~~~C~iC~~~~~------~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~--~~~~~~~~~~~n~~l~~~i~~~ 213 (340)
.+.|-||.+.|. .|..|.|||+||..|+.+.+......||.||.+ +.....+.+..|..+..+++.+
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 356889988777 567789999999999999988878899999998 5555667888888888888776
No 62
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.78 E-value=0.00047 Score=66.90 Aligned_cols=48 Identities=25% Similarity=0.636 Sum_probs=39.7
Q ss_pred hcCCCcccccccCCCCCCc----ccCCCCcccchhhhhhhccCCCCCCCCCcccC
Q 019484 143 IFGGSLNCSFCMQLPERPV----TTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 143 ~~~~~~~C~iC~~~~~~pv----~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
.+.+.-+||||++-+..-+ ++.|.|+|...|+.+|+.. +||+||....
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~ 222 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS 222 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence 3456779999999998765 4589999999999999854 7999987554
No 63
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.0008 Score=63.80 Aligned_cols=48 Identities=25% Similarity=0.591 Sum_probs=40.8
Q ss_pred CCcccccccCCCCCCcccCCCCc-ccchhhhhhhccCCCCCCCCCcccCC
Q 019484 146 GSLNCSFCMQLPERPVTTPCGHN-FCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv~l~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
....|-||+.-.++-++|||.|. .|..|.+...-+ ...||+||.++..
T Consensus 289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q-~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ-TNNCPICRQPIEE 337 (349)
T ss_pred CCCeeEEEecCCcceEEecchhhehhHhHHHHHHHh-hcCCCccccchHh
Confidence 35679999999999999999998 699999875533 5689999999875
No 64
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=96.46 E-value=0.001 Score=65.61 Aligned_cols=53 Identities=23% Similarity=0.443 Sum_probs=41.6
Q ss_pred CcccccccCCC--CCCceeeeCCCCCCcccCCCCCCCCCCC----CCCCccCCCCCCCCc
Q 019484 12 DGMCMRCKETP--VEEEQLCCKTCATPWHVACLVRPPESLA----STLLWECPDCTGDAA 65 (340)
Q Consensus 12 ~~~c~~c~~~~--~~~~~l~c~~c~~~~h~~cl~~p~~~~~----p~~~w~c~~c~~~~~ 65 (340)
+..|-||..+. .-.+||.|+.|...||.-|.. |+.+.. |...|||..|...+.
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chq-p~i~~~l~~D~~~~w~C~~C~~~~~ 226 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQ-PLIKDELAGDPFYEWFCDVCNRGPK 226 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhcc-CCCCHhhccCccceEeehhhccchh
Confidence 45599998632 334899999999999999999 876654 556799999986554
No 65
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.43 E-value=0.0012 Score=48.69 Aligned_cols=48 Identities=27% Similarity=0.649 Sum_probs=23.8
Q ss_pred CcccccccCCCC----CCcc--c--CCCCcccchhhhhhhcc----C------CCCCCCCCcccCC
Q 019484 147 SLNCSFCMQLPE----RPVT--T--PCGHNFCLKCFQKWIGL----G------KKTCAKCRCIIPS 194 (340)
Q Consensus 147 ~~~C~iC~~~~~----~pv~--l--~CgH~FC~~Ci~~~~~~----~------~~~CP~Cr~~~~~ 194 (340)
++.|.||+..+. .|+. . .|+..|...||.+|+.. + ...||.|+.++.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 467999998765 2332 2 69999999999999762 1 1379999998764
No 66
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.37 E-value=0.0012 Score=65.35 Aligned_cols=50 Identities=24% Similarity=0.708 Sum_probs=42.6
Q ss_pred CCCcccccccCCCCCCcccCCCCcccchhhhhhhc----cCCCCCCCCCcccCC
Q 019484 145 GGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIG----LGKKTCAKCRCIIPS 194 (340)
Q Consensus 145 ~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~----~~~~~CP~Cr~~~~~ 194 (340)
..+..|.+|.+.-.+++...|.|.||..|+..+.. ..+.+||.|...+..
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 45678999999999999999999999999988755 335899999887654
No 67
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.29 E-value=0.0015 Score=62.51 Aligned_cols=47 Identities=32% Similarity=0.828 Sum_probs=40.2
Q ss_pred cccccccCCCCCCcccCCCCcccchhhhhhhccC-CCCCCCCCcccCC
Q 019484 148 LNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLG-KKTCAKCRCIIPS 194 (340)
Q Consensus 148 ~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 194 (340)
..|.||-+.-++-.+-||||..|..|+..|.... ...||.||..+..
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 4699999988886667999999999999998643 6799999998864
No 68
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.0016 Score=63.89 Aligned_cols=48 Identities=33% Similarity=0.827 Sum_probs=38.7
Q ss_pred CCcccccccCCCCC-----------------CcccCCCCcccchhhhhhhccCCCCCCCCCcccC
Q 019484 146 GSLNCSFCMQLPER-----------------PVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 146 ~~~~C~iC~~~~~~-----------------pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
....|+||+....- -+.+||.|.|...|+..|+...+..||.||.+++
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 35679999976651 2345999999999999999865679999999876
No 69
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.0021 Score=60.61 Aligned_cols=47 Identities=26% Similarity=0.590 Sum_probs=41.8
Q ss_pred CCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccC
Q 019484 146 GSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
++-.||||..-....|..||+|.-|+.||.+++.+ ...|-.|+..+.
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~ 467 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVI 467 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecceee
Confidence 45679999999999999999999999999999886 678999988765
No 70
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=96.10 E-value=0.0019 Score=62.47 Aligned_cols=36 Identities=28% Similarity=0.775 Sum_probs=32.0
Q ss_pred cCCCcccccccCCCCCCcccCCCCcccchhhhhhhc
Q 019484 144 FGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIG 179 (340)
Q Consensus 144 ~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~ 179 (340)
+++++.|+||...|.+|++|+|+|+.|..|....+.
T Consensus 1 meeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 1 MEEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred CcccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 357899999999999999999999999999876543
No 71
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=96.09 E-value=0.0024 Score=65.53 Aligned_cols=51 Identities=24% Similarity=0.499 Sum_probs=44.3
Q ss_pred CCCcccccccCCC--CCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCC
Q 019484 10 NGDGMCMRCKETP--VEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGD 63 (340)
Q Consensus 10 ~~~~~c~~c~~~~--~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~ 63 (340)
++|..|-||+..+ ...+|..||.|+.--|+.|-- +.++|+|.|+|..|.-.
T Consensus 269 dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyG---Ile~p~gpWlCr~Calg 321 (893)
T KOG0954|consen 269 DEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYG---ILEVPEGPWLCRTCALG 321 (893)
T ss_pred cccceeceecCCCccccceeEEeccchhHHHHhhhc---eeecCCCCeeehhcccc
Confidence 4788999999974 456899999999999999987 56799999999999755
No 72
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.07 E-value=0.0056 Score=41.49 Aligned_cols=43 Identities=21% Similarity=0.569 Sum_probs=22.2
Q ss_pred cccccCCCCCC--ccc--CCCCcccchhhhhhhccCCCCCCCCCccc
Q 019484 150 CSFCMQLPERP--VTT--PCGHNFCLKCFQKWIGLGKKTCAKCRCII 192 (340)
Q Consensus 150 C~iC~~~~~~p--v~l--~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 192 (340)
||+|.+.+... -.. +||+.+|..|..+.+......||.||.++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 67888877422 223 68999999999998876678999999875
No 73
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.99 E-value=0.0045 Score=42.94 Aligned_cols=46 Identities=26% Similarity=0.570 Sum_probs=37.1
Q ss_pred CCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 146 GSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
....|-.|...-...++++|||..|..|..-+. -..||.|..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~r---YngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGER---YNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChhh---ccCCCCCCCcccC
Confidence 456688888888888999999999999976544 3479999998864
No 74
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.99 E-value=0.0045 Score=42.30 Aligned_cols=41 Identities=29% Similarity=0.860 Sum_probs=31.8
Q ss_pred ccccccC--CCCCCcccCCC-----CcccchhhhhhhccC-CCCCCCCC
Q 019484 149 NCSFCMQ--LPERPVTTPCG-----HNFCLKCFQKWIGLG-KKTCAKCR 189 (340)
Q Consensus 149 ~C~iC~~--~~~~pv~l~Cg-----H~FC~~Ci~~~~~~~-~~~CP~Cr 189 (340)
.|.||++ .-.++...||. |.|...|+.+|+... ...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889997 34466777885 789999999998743 56899995
No 75
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=95.94 E-value=0.0079 Score=65.41 Aligned_cols=54 Identities=28% Similarity=0.679 Sum_probs=47.5
Q ss_pred CCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 10 NGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 10 ~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
.....|..|.++..+ .+++|+.|...||.+|+. ||++.+++|+|.|+.|.....
T Consensus 153 ~~~~~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 206 (904)
T KOG1246|consen 153 IDYPQCNTCSKGKEE-KLLLCDSCDDSYHTYCLR-PPLTRVPDGDWRCPKCIPTPE 206 (904)
T ss_pred ccchhhhccccCCCc-cceecccccCcccccccC-CCCCcCCcCcccCCccccccc
Confidence 345679999998888 556999999999999999 999999999999999987654
No 76
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.0013 Score=60.64 Aligned_cols=42 Identities=36% Similarity=0.759 Sum_probs=35.6
Q ss_pred CcccccccCCCCCCcccCCCCc-ccchhhhhhhccCCCCCCCCCcccC
Q 019484 147 SLNCSFCMQLPERPVTTPCGHN-FCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
...|.||++...+-+.|+|||. -|..|-++ ...||+||+.+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr-----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR-----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc-----cccCchHHHHHH
Confidence 6789999999999999999998 49999654 348999998654
No 77
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=95.70 E-value=0.0062 Score=45.36 Aligned_cols=44 Identities=27% Similarity=0.523 Sum_probs=32.3
Q ss_pred ccccccCCCC----CCccc-CCCCcccchhhhhhhccCCCCCCCCCcccC
Q 019484 149 NCSFCMQLPE----RPVTT-PCGHNFCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 149 ~C~iC~~~~~----~pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
.|+-|..-+. -|+.. .|.|.|...||.+|+.. ...||++|+.+.
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 4555554222 23333 69999999999999987 678999998764
No 78
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.0051 Score=59.24 Aligned_cols=48 Identities=29% Similarity=0.745 Sum_probs=39.2
Q ss_pred CcccccccCCCCCC-----cccCCCCcccchhhhhhhccC-CCCCCCCCcccCC
Q 019484 147 SLNCSFCMQLPERP-----VTTPCGHNFCLKCFQKWIGLG-KKTCAKCRCIIPS 194 (340)
Q Consensus 147 ~~~C~iC~~~~~~p-----v~l~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 194 (340)
..+||||++-+..| +.+.|||.|-..||++|+.+. ...||.|.....+
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katk 57 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATK 57 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHH
Confidence 46899999998866 557899999999999998632 4589999876554
No 79
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.003 Score=46.58 Aligned_cols=34 Identities=29% Similarity=0.719 Sum_probs=27.4
Q ss_pred Cccc-CCCCcccchhhhhhhcc--CCCCCCCCCcccC
Q 019484 160 PVTT-PCGHNFCLKCFQKWIGL--GKKTCAKCRCIIP 193 (340)
Q Consensus 160 pv~l-~CgH~FC~~Ci~~~~~~--~~~~CP~Cr~~~~ 193 (340)
|.++ -|.|.|...||.+|+.. ....||+||+.+.
T Consensus 45 PLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 45 PLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 4444 69999999999999873 3569999998764
No 80
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.0046 Score=56.46 Aligned_cols=47 Identities=30% Similarity=0.658 Sum_probs=37.4
Q ss_pred CcccccccCCCCCCc----------ccCCCCcccchhhhhhhccC-CCCCCCCCcccC
Q 019484 147 SLNCSFCMQLPERPV----------TTPCGHNFCLKCFQKWIGLG-KKTCAKCRCIIP 193 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv----------~l~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~ 193 (340)
+..|.||-.-+...+ .|.|+|.|...||..|---+ +.+||.|+..+.
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 557999988776444 57999999999999996533 579999987664
No 81
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.015 Score=55.33 Aligned_cols=48 Identities=29% Similarity=0.565 Sum_probs=36.7
Q ss_pred hcCCCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 143 IFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 143 ~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
.+.....|.||.+-..+.+.+||||..| |..-... ...||+||..+..
T Consensus 301 ~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIRL 348 (355)
T ss_pred ccCCCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHHHH
Confidence 4445678999999999999999999976 6544332 3459999987753
No 82
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=95.02 E-value=0.027 Score=53.23 Aligned_cols=81 Identities=19% Similarity=0.313 Sum_probs=60.9
Q ss_pred hcCCCcccccccCCCCCCccc-CCCCcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHHhhCCCCC
Q 019484 143 IFGGSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAKRSNTTVP 221 (340)
Q Consensus 143 ~~~~~~~C~iC~~~~~~pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~~~~~~~~ 221 (340)
..-+-+.||||.+.+..|+.= .=||.-|..|-.+. ...||.||.++.. ..+..+.++++.....-+...
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~----~~~CP~Cr~~~g~------~R~~amEkV~e~~~vpC~~~~ 113 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV----SNKCPTCRLPIGN------IRCRAMEKVAEAVLVPCKNAK 113 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhhh----cccCCcccccccc------HHHHHHHHHHHhceecccccc
Confidence 344578899999999998764 55899999997643 4579999998874 267778888888777666666
Q ss_pred CCCCcceeeccc
Q 019484 222 GGPSKIYHFVHN 233 (340)
Q Consensus 222 ~~~~~~~~~~~~ 233 (340)
-+..+...|...
T Consensus 114 ~GC~~~~~Y~~~ 125 (299)
T KOG3002|consen 114 LGCTKSFPYGEK 125 (299)
T ss_pred cCCceeeccccc
Confidence 677776666654
No 83
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=94.89 E-value=0.015 Score=62.42 Aligned_cols=51 Identities=29% Similarity=0.762 Sum_probs=45.6
Q ss_pred CCCCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCC
Q 019484 8 PCNGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTG 62 (340)
Q Consensus 8 ~~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~ 62 (340)
+..=+.+|++|.+.. .+|||.+|++-||+-|.. ||+-.+|+..|.|--|..
T Consensus 340 ~~~~ddhcrf~~d~~---~~lc~Et~prvvhlEcv~-hP~~~~~s~~~e~evc~~ 390 (1414)
T KOG1473|consen 340 EIEYDDHCRFCHDLG---DLLCCETCPRVVHLECVF-HPRFAVPSAFWECEVCNI 390 (1414)
T ss_pred ceeecccccccCccc---ceeecccCCceEEeeecC-CccccCCCccchhhhhhh
Confidence 445578899998874 899999999999999999 999999999999999963
No 84
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=94.84 E-value=0.012 Score=57.81 Aligned_cols=50 Identities=22% Similarity=0.583 Sum_probs=41.7
Q ss_pred CcccccccCCCC--CCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCC
Q 019484 12 DGMCMRCKETPV--EEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDA 64 (340)
Q Consensus 12 ~~~c~~c~~~~~--~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~ 64 (340)
|+.|.+|..... ...+..||+|+..-|-.|-- -+ -+|+|.|+|-+|.-..
T Consensus 193 d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYG-I~--f~peG~WlCrkCi~~~ 244 (669)
T COG5141 193 DDICTKCTSTHNENSNAIVFCDGCEICVHQSCYG-IQ--FLPEGFWLCRKCIYGE 244 (669)
T ss_pred hhhhHhccccccCCcceEEEecCcchhhhhhccc-ce--ecCcchhhhhhhcccc
Confidence 678999988654 46679999999999999998 43 6899999999996443
No 85
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.78 E-value=0.0048 Score=63.70 Aligned_cols=48 Identities=21% Similarity=0.468 Sum_probs=38.9
Q ss_pred CCcccccccCCCCCCcc---cCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 146 GSLNCSFCMQLPERPVT---TPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv~---l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
....|++|+..+.+-.. .+|+|.||..||..|-+. ..+||+||..|..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhe
Confidence 45679999887765433 479999999999999876 5799999998875
No 86
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.73 E-value=0.009 Score=62.95 Aligned_cols=50 Identities=28% Similarity=0.814 Sum_probs=39.0
Q ss_pred cCCCcccccccCCCC-----CC--cccCCCCcccchhhhhhhcc-CCCCCCCCCcccC
Q 019484 144 FGGSLNCSFCMQLPE-----RP--VTTPCGHNFCLKCFQKWIGL-GKKTCAKCRCIIP 193 (340)
Q Consensus 144 ~~~~~~C~iC~~~~~-----~p--v~l~CgH~FC~~Ci~~~~~~-~~~~CP~Cr~~~~ 193 (340)
+.....|+||..++. -| ..-.|.|.|+..|+.+|++. +..+||.||..++
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 345568999998776 23 22369999999999999984 4679999998765
No 87
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.018 Score=55.14 Aligned_cols=47 Identities=21% Similarity=0.657 Sum_probs=34.7
Q ss_pred cccccccCCCCCC---ccc-CCCCcccchhhhhhhccC--CCCCCCCCcccCC
Q 019484 148 LNCSFCMQLPERP---VTT-PCGHNFCLKCFQKWIGLG--KKTCAKCRCIIPS 194 (340)
Q Consensus 148 ~~C~iC~~~~~~p---v~l-~CgH~FC~~Ci~~~~~~~--~~~CP~Cr~~~~~ 194 (340)
-.|.||.+.+..- ..+ .|||+|...|+..|+... +..||+|+-.+..
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~ 57 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE 57 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence 3699997666532 223 599999999999999843 3589999955544
No 88
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.90 E-value=0.036 Score=50.13 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=41.5
Q ss_pred CCcccccccCCCCCCcc----cCCCCcccchhhhhhhccCCCCCCCCCcccCCC
Q 019484 146 GSLNCSFCMQLPERPVT----TPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSK 195 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv~----l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 195 (340)
..+.||||.+.+.+.+. -+|||.||..|+++.+.. ...||+|..++..+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCccc
Confidence 56899999999996532 389999999999998876 67899999988764
No 89
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=93.75 E-value=0.041 Score=57.40 Aligned_cols=33 Identities=30% Similarity=0.677 Sum_probs=29.3
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 32 TCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 32 ~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
+|.+.||..|++ |-+.+-|+++|.||+|.-...
T Consensus 1 ~~~r~~~~~~~~-p~~~~~~~~~~k~~~~e~~~~ 33 (696)
T KOG0383|consen 1 TCPRAYHRVCLD-PKLKEEPEMDPKCPGCESSSA 33 (696)
T ss_pred CCCcccCcCCCC-cccccCCcCCccCcchhhccc
Confidence 589999999999 999999999999999975443
No 90
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.42 E-value=0.064 Score=49.80 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=40.2
Q ss_pred cCCCcccccccCCCCC---Cccc-CCCCcccchhhhhhhccCCCCCCCCCcccCCCC
Q 019484 144 FGGSLNCSFCMQLPER---PVTT-PCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKM 196 (340)
Q Consensus 144 ~~~~~~C~iC~~~~~~---pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 196 (340)
-...+.|||....|.. -|.| +|||+|+..+|...- ....||+|..+|....
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~D 164 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEED 164 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCC
Confidence 3457899999998853 2444 999999999999874 2567999999998653
No 91
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.23 E-value=0.03 Score=58.62 Aligned_cols=54 Identities=30% Similarity=0.662 Sum_probs=42.2
Q ss_pred hhhhcCCCcccccccCCCCCCcccCCCCcccchhhhhhhccC-CCCCCCCCcccCC
Q 019484 140 LSDIFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLG-KKTCAKCRCIIPS 194 (340)
Q Consensus 140 ~~~~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 194 (340)
....+...+.|.+|++ ...++.+.|+|.||..|+...+... ...||.||..+..
T Consensus 447 ~i~~l~~~~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 447 LIVDLSVSHWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred HHHHHhhccccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 3444444489999999 8888889999999999999987743 3479999976643
No 92
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.18 E-value=0.041 Score=49.80 Aligned_cols=44 Identities=30% Similarity=0.779 Sum_probs=30.9
Q ss_pred cccccccCCCC-CCcc-cCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 148 LNCSFCMQLPE-RPVT-TPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 148 ~~C~iC~~~~~-~pv~-l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
..|..|..... .|.. +.|+|.||..|..-... ..||+|++++..
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~---~~C~lCkk~ir~ 49 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP---DVCPLCKKSIRI 49 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCCc---cccccccceeee
Confidence 45777765444 3333 48999999999765432 289999998653
No 93
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=93.00 E-value=0.011 Score=37.59 Aligned_cols=34 Identities=26% Similarity=0.590 Sum_probs=18.6
Q ss_pred CceeeeCCCCCCcccCCCCCCCCCCCCCC-CccCCCCC
Q 019484 25 EEQLCCKTCATPWHVACLVRPPESLASTL-LWECPDCT 61 (340)
Q Consensus 25 ~~~l~c~~c~~~~h~~cl~~p~~~~~p~~-~w~c~~c~ 61 (340)
..+|.|+.|.-..|..|-- +..+|.+ +|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CYG---v~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYG---VSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT----SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCC---cccCCCCCcEECCcCC
Confidence 4689999999999999977 2345556 79998773
No 94
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.97 E-value=0.042 Score=43.00 Aligned_cols=27 Identities=22% Similarity=0.727 Sum_probs=24.1
Q ss_pred CCCCcccchhhhhhhccCCCCCCCCCcc
Q 019484 164 PCGHNFCLKCFQKWIGLGKKTCAKCRCI 191 (340)
Q Consensus 164 ~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~ 191 (340)
.|.|.|...||.+|++. ...||+|.+.
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence 69999999999999987 5789999765
No 95
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.85 E-value=0.071 Score=49.41 Aligned_cols=46 Identities=28% Similarity=0.750 Sum_probs=36.0
Q ss_pred ccccccCCC-CCCc----ccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 149 NCSFCMQLP-ERPV----TTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 149 ~C~iC~~~~-~~pv----~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
.||+|.... ..|- +-+|+|+.|.+|+...+..+...||.|...+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 488988633 3441 128999999999999999889999999887654
No 96
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=92.44 E-value=0.084 Score=36.64 Aligned_cols=33 Identities=21% Similarity=0.621 Sum_probs=28.7
Q ss_pred CCcccccccCCCC-CCceeeeCCCCCCcccCCCC
Q 019484 11 GDGMCMRCKETPV-EEEQLCCKTCATPWHVACLV 43 (340)
Q Consensus 11 ~~~~c~~c~~~~~-~~~~l~c~~c~~~~h~~cl~ 43 (340)
....|.+|+..-. .++++.|..|..+||-.|-.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 3568999999764 78999999999999999976
No 97
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.27 E-value=0.17 Score=53.31 Aligned_cols=42 Identities=26% Similarity=0.640 Sum_probs=35.2
Q ss_pred CcccccccCCCCCCccc-CCCCcccchhhhhhhccCCCCCCCCCccc
Q 019484 147 SLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGLGKKTCAKCRCII 192 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 192 (340)
...|..|...+.-|++- .|||.|+..|+. .+...||.|+...
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccchhh
Confidence 36899999999999664 999999999998 2367899997743
No 98
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.20 E-value=0.054 Score=55.11 Aligned_cols=42 Identities=31% Similarity=0.685 Sum_probs=33.7
Q ss_pred CCCcccccccCCCC----CCcccCCCCcccchhhhhhhccCCCCCCCCCc
Q 019484 145 GGSLNCSFCMQLPE----RPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRC 190 (340)
Q Consensus 145 ~~~~~C~iC~~~~~----~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~ 190 (340)
.+.+.|+||+..|. .||.+-|||+.|..|+..... ..|| |..
T Consensus 9 ~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp-~~~ 54 (861)
T KOG3161|consen 9 VLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP-TKR 54 (861)
T ss_pred HHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC-CCc
Confidence 34678999987776 799999999999999987663 4688 543
No 99
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.18 E-value=0.078 Score=51.23 Aligned_cols=49 Identities=18% Similarity=0.390 Sum_probs=39.4
Q ss_pred hcCCCcccccccCCCC---CCcccCCCCcccchhhhhhhccCC--CCCCCCCcc
Q 019484 143 IFGGSLNCSFCMQLPE---RPVTTPCGHNFCLKCFQKWIGLGK--KTCAKCRCI 191 (340)
Q Consensus 143 ~~~~~~~C~iC~~~~~---~pv~l~CgH~FC~~Ci~~~~~~~~--~~CP~Cr~~ 191 (340)
.+...|.|||=.+--. .|+.+.|||..+..-+.+..+++. +.||.|-..
T Consensus 330 ~fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 330 HFHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred cccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 3556789999766444 578899999999999999887766 899999543
No 100
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=92.18 E-value=0.053 Score=56.10 Aligned_cols=72 Identities=22% Similarity=0.482 Sum_probs=52.4
Q ss_pred hhhhhcCCCcccccccCCCCCCcccCCCCcccchhhhhhhc--cCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHH
Q 019484 139 ELSDIFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIG--LGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMA 213 (340)
Q Consensus 139 ~~~~~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~--~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~ 213 (340)
.....+...+.|+||...+..|+.+.|-|.||..|+...+. ++...||+|+..+..+ ..+-......+++..
T Consensus 13 ~vi~~~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~---s~~Es~r~sq~vqe~ 86 (684)
T KOG4362|consen 13 QVINAMQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR---SLRESPRFSQLSKES 86 (684)
T ss_pred hHHHHHhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhh---hccccchHHHHHHHh
Confidence 34456667899999999999999999999999999987544 3357899999877654 222233444444433
No 101
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=91.95 E-value=0.1 Score=35.79 Aligned_cols=45 Identities=27% Similarity=0.448 Sum_probs=23.1
Q ss_pred CcccccccCCCCCCccc-CCCCcccchh---hhhhhccCCCCCCCCCcc
Q 019484 147 SLNCSFCMQLPERPVTT-PCGHNFCLKC---FQKWIGLGKKTCAKCRCI 191 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l-~CgH~FC~~C---i~~~~~~~~~~CP~Cr~~ 191 (340)
.+.||+....+..|+.. .|.|.-|.+= |......+.+.||+|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 36899999999999986 8999977652 222222456899999763
No 102
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.94 E-value=0.093 Score=50.89 Aligned_cols=53 Identities=23% Similarity=0.679 Sum_probs=37.8
Q ss_pred hhhhhhcCCCcccccccCCCCC---CcccCCCCcccchhhhhhhcc----C---CCCCCCCCc
Q 019484 138 NELSDIFGGSLNCSFCMQLPER---PVTTPCGHNFCLKCFQKWIGL----G---KKTCAKCRC 190 (340)
Q Consensus 138 ~~~~~~~~~~~~C~iC~~~~~~---pv~l~CgH~FC~~Ci~~~~~~----~---~~~CP~Cr~ 190 (340)
+....-....+.|.||++...- -+.+||+|.||+.|+..+... + ...||.+.-
T Consensus 175 a~~~~F~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 175 ATLEKFVNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred HHHHHHHhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 3334445567899999987764 355799999999999987651 2 347876643
No 103
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=91.74 E-value=0.078 Score=54.38 Aligned_cols=50 Identities=26% Similarity=0.564 Sum_probs=40.0
Q ss_pred cccccccC--CCCCCceeeeCC--CCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 13 GMCMRCKE--TPVEEEQLCCKT--CATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 13 ~~c~~c~~--~~~~~~~l~c~~--c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
+-|-||.+ +-.+.-|.-||+ |--+-|-.|-- +-.||+|.|||-+|..-..
T Consensus 6 GGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG---IvqVPtGpWfCrKCesqer 59 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYG---IVQVPTGPWFCRKCESQER 59 (900)
T ss_pred cceeeecCcCCCccCceeeecCCCceeeeehhcce---eEecCCCchhhhhhhhhhh
Confidence 45889987 345566789998 88999999987 4579999999999975443
No 104
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=91.22 E-value=0.026 Score=52.11 Aligned_cols=48 Identities=21% Similarity=0.389 Sum_probs=33.8
Q ss_pred CCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 10 NGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 10 ~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
|....|.+|...- .+.+=-+|.++|...|+. --|..- =+||-|..++.
T Consensus 23 Ds~lrC~IC~~~i---~ip~~TtCgHtFCslCIR-~hL~~q----p~CP~Cr~~~~ 70 (391)
T COG5432 23 DSMLRCRICDCRI---SIPCETTCGHTFCSLCIR-RHLGTQ----PFCPVCREDPC 70 (391)
T ss_pred hhHHHhhhhhhee---ecceecccccchhHHHHH-HHhcCC----CCCccccccHH
Confidence 5677899998753 222223588999999988 555544 38999998776
No 105
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=90.99 E-value=0.14 Score=43.44 Aligned_cols=21 Identities=29% Similarity=0.786 Sum_probs=18.1
Q ss_pred CCcccccccCCCCCCcccCCC
Q 019484 146 GSLNCSFCMQLPERPVTTPCG 166 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv~l~Cg 166 (340)
++.+|||||+...+.|.|-|.
T Consensus 1 ed~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CCccCceeccCCCceEEEEec
Confidence 357899999999999998765
No 106
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.55 E-value=0.12 Score=49.06 Aligned_cols=47 Identities=28% Similarity=0.683 Sum_probs=38.2
Q ss_pred CCcccccccCCCCCCcccCCCCcccchhhhhhhc-cCCCCCCCCCccc
Q 019484 146 GSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIG-LGKKTCAKCRCII 192 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~-~~~~~CP~Cr~~~ 192 (340)
+...|-||-.-+.....+||+|..|.-|..+... -....|++||...
T Consensus 60 en~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 60 ENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 4567999999998888899999999999887533 1257899999753
No 107
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=90.44 E-value=0.13 Score=48.39 Aligned_cols=47 Identities=17% Similarity=0.419 Sum_probs=39.4
Q ss_pred CCcccccccCCCCCCccc-CCCCcccchhhhhhhccCCCCCCCCCcccC
Q 019484 146 GSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
+...||||+....+|..+ --|-.||+.|+..++.+ ...||+-..+..
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPAS 346 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcch
Confidence 456799999999999887 46999999999999885 789998766554
No 108
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.06 E-value=0.083 Score=50.84 Aligned_cols=46 Identities=30% Similarity=0.779 Sum_probs=36.4
Q ss_pred CcccccccCCCC-CC---cccCCCCcccchhhhhhhcc-CCCCCCCCCccc
Q 019484 147 SLNCSFCMQLPE-RP---VTTPCGHNFCLKCFQKWIGL-GKKTCAKCRCII 192 (340)
Q Consensus 147 ~~~C~iC~~~~~-~p---v~l~CgH~FC~~Ci~~~~~~-~~~~CP~Cr~~~ 192 (340)
.+.|..|-+.+- ++ -.|||.|.|...|+..++.+ +..+||.||+-.
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 588999998665 22 33699999999999998764 568999999543
No 109
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=89.82 E-value=0.22 Score=41.00 Aligned_cols=49 Identities=20% Similarity=0.565 Sum_probs=41.3
Q ss_pred CCcccccccCCCCCCccc-C---CCCcccchhhhhhhcc--CCCCCCCCCcccCC
Q 019484 146 GSLNCSFCMQLPERPVTT-P---CGHNFCLKCFQKWIGL--GKKTCAKCRCIIPS 194 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv~l-~---CgH~FC~~Ci~~~~~~--~~~~CP~Cr~~~~~ 194 (340)
.-..|.||.+.-.+...| | ||-..|..|....|+. -...||.|+..|..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 467899999999988777 3 9999999999987773 35699999998875
No 110
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=89.71 E-value=0.17 Score=39.86 Aligned_cols=33 Identities=30% Similarity=0.642 Sum_probs=26.5
Q ss_pred cCCCcccccccCCCCCCcc--cCCCCcccchhhhh
Q 019484 144 FGGSLNCSFCMQLPERPVT--TPCGHNFCLKCFQK 176 (340)
Q Consensus 144 ~~~~~~C~iC~~~~~~pv~--l~CgH~FC~~Ci~~ 176 (340)
+.+...|++|...+...+. .||||.|+..|+.+
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEEecccccC
Confidence 4456779999999886654 39999999999753
No 111
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.59 E-value=0.51 Score=42.25 Aligned_cols=50 Identities=22% Similarity=0.370 Sum_probs=39.3
Q ss_pred CCCcccccccCCCC--CCcccCCCCcccchhhhhhhcc-------CCCCCCCCCcccCC
Q 019484 145 GGSLNCSFCMQLPE--RPVTTPCGHNFCLKCFQKWIGL-------GKKTCAKCRCIIPS 194 (340)
Q Consensus 145 ~~~~~C~iC~~~~~--~pv~l~CgH~FC~~Ci~~~~~~-------~~~~CP~Cr~~~~~ 194 (340)
+..-.|.+|...+. +-+.|.|-|.|.+.|+..|..+ ....||.|...+-.
T Consensus 48 DY~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 34567999999888 4466799999999999998652 24689999887653
No 112
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=86.88 E-value=0.27 Score=45.82 Aligned_cols=42 Identities=31% Similarity=0.695 Sum_probs=35.0
Q ss_pred cccccccCCCC----CCcccCCCCcccchhhhhhhccCCCCCCCCCc
Q 019484 148 LNCSFCMQLPE----RPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRC 190 (340)
Q Consensus 148 ~~C~iC~~~~~----~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~ 190 (340)
..||||.+.+. .|..++|||+....|+......+ .+||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 34999998665 55667999999999999887775 99999987
No 113
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=86.39 E-value=0.44 Score=45.18 Aligned_cols=47 Identities=21% Similarity=0.564 Sum_probs=35.0
Q ss_pred ccccccCCCCCC--cc--cCCCCcccchhhhhhhccCCCCCCCCCcccCCC
Q 019484 149 NCSFCMQLPERP--VT--TPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSK 195 (340)
Q Consensus 149 ~C~iC~~~~~~p--v~--l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 195 (340)
.||+|++.+... -. -+||-..|.-|.....+.-+..||.||..+...
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 499999987732 22 268888899998776554467999999987653
No 114
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=85.54 E-value=0.21 Score=54.89 Aligned_cols=57 Identities=21% Similarity=0.600 Sum_probs=46.7
Q ss_pred CchhhhhhcCCCcccccccCCCC-CCcccCCCCcccchhhhhhhccCCCCCCCCCcccC
Q 019484 136 DENELSDIFGGSLNCSFCMQLPE-RPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 136 ~~~~~~~~~~~~~~C~iC~~~~~-~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
.....+..+-..+.|.||.+.+. .-....|||.+|..|...|+.. +..||+|+....
T Consensus 1142 s~~~y~~~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1142 SDVRYLMNLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICKSIKG 1199 (1394)
T ss_pred chHHHHHHhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchhhhhh
Confidence 34466777778889999999999 5556699999999999999986 778999985443
No 115
>PHA03096 p28-like protein; Provisional
Probab=85.40 E-value=0.38 Score=45.17 Aligned_cols=43 Identities=21% Similarity=0.461 Sum_probs=30.5
Q ss_pred cccccccCCCCC-C-------cccCCCCcccchhhhhhhccC--CCCCCCCCc
Q 019484 148 LNCSFCMQLPER-P-------VTTPCGHNFCLKCFQKWIGLG--KKTCAKCRC 190 (340)
Q Consensus 148 ~~C~iC~~~~~~-p-------v~l~CgH~FC~~Ci~~~~~~~--~~~CP~Cr~ 190 (340)
-.|.||++.... + +...|.|.||..|+..|.... ...||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 569999986652 1 223799999999999997632 346666654
No 116
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=84.58 E-value=0.21 Score=45.12 Aligned_cols=46 Identities=26% Similarity=0.663 Sum_probs=35.4
Q ss_pred CcccccccCCC-CCCc--cc--C-CCCcccchhhhhhhccCCCCCC--CCCccc
Q 019484 147 SLNCSFCMQLP-ERPV--TT--P-CGHNFCLKCFQKWIGLGKKTCA--KCRCII 192 (340)
Q Consensus 147 ~~~C~iC~~~~-~~pv--~l--~-CgH~FC~~Ci~~~~~~~~~~CP--~Cr~~~ 192 (340)
+..||||.... -.|- .+ | |-|..|.+|+.+.+..+..-|| -|.+-+
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 45799998643 3452 22 4 9999999999999999899999 786544
No 117
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=84.25 E-value=0.95 Score=29.92 Aligned_cols=39 Identities=21% Similarity=0.650 Sum_probs=22.3
Q ss_pred cccccCCCCCCccc---CCCCcccchhhhhhhccCCC-CCCCC
Q 019484 150 CSFCMQLPERPVTT---PCGHNFCLKCFQKWIGLGKK-TCAKC 188 (340)
Q Consensus 150 C~iC~~~~~~pv~l---~CgH~FC~~Ci~~~~~~~~~-~CP~C 188 (340)
|.+|.++...-+.= .|+-.+...|+..++..... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 67788877765443 48888999999998875433 69987
No 118
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=84.09 E-value=0.47 Score=44.50 Aligned_cols=44 Identities=27% Similarity=0.514 Sum_probs=30.3
Q ss_pred CcccccccCCCC-CCcccCCCCcccchhhhhhhccCCCCCCCCCcccC
Q 019484 147 SLNCSFCMQLPE-RPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 147 ~~~C~iC~~~~~-~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
.-.|.-|--.+. .=.+++|.|.||+.|....- .+.||.|...+.
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~---dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARSDS---DKICPLCDDRVQ 134 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhcCc---cccCcCcccHHH
Confidence 346777765444 23457999999999976432 458999976543
No 119
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.71 E-value=0.84 Score=44.84 Aligned_cols=49 Identities=27% Similarity=0.735 Sum_probs=32.6
Q ss_pred Cccccccc-CCCCCC---cccCCCCcccchhhhhhhcc-----CCCCCCC--CCcccCCC
Q 019484 147 SLNCSFCM-QLPERP---VTTPCGHNFCLKCFQKWIGL-----GKKTCAK--CRCIIPSK 195 (340)
Q Consensus 147 ~~~C~iC~-~~~~~p---v~l~CgH~FC~~Ci~~~~~~-----~~~~CP~--Cr~~~~~~ 195 (340)
..+|.||. +..... .+..|+|.||..|+.+++.. ....||. |...+...
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~ 205 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLE 205 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHH
Confidence 56899999 433321 23579999999999988762 2346754 55555443
No 120
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=81.41 E-value=0.28 Score=35.92 Aligned_cols=41 Identities=24% Similarity=0.511 Sum_probs=23.9
Q ss_pred CcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccC
Q 019484 147 SLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
++.||.|...+..-- ++.+|..|-..... ...||.|..++.
T Consensus 1 e~~CP~C~~~L~~~~----~~~~C~~C~~~~~~--~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEWQG----GHYHCEACQKDYKK--EAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEEET----TEEEETTT--EEEE--EEE-TTT-SB-E
T ss_pred CCcCCCCCCccEEeC----CEEECcccccccee--cccCCCcccHHH
Confidence 357999998765321 88899999876554 458999988775
No 121
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=80.98 E-value=0.87 Score=48.14 Aligned_cols=48 Identities=27% Similarity=0.683 Sum_probs=37.3
Q ss_pred CCCcccccccCCCC--CCcc--cCCCCcccchhhhhhhcc------CCCCCCCCCccc
Q 019484 145 GGSLNCSFCMQLPE--RPVT--TPCGHNFCLKCFQKWIGL------GKKTCAKCRCII 192 (340)
Q Consensus 145 ~~~~~C~iC~~~~~--~pv~--l~CgH~FC~~Ci~~~~~~------~~~~CP~Cr~~~ 192 (340)
...+.|.||.+.+. .|+. ..|-|.|...||.+|-.+ ..+.||.|....
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 35689999999887 3433 268899999999999662 368999998543
No 122
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.52 E-value=1.2 Score=39.90 Aligned_cols=40 Identities=28% Similarity=0.606 Sum_probs=31.8
Q ss_pred cccccCCCCCCcccCCCCc-ccchhhhhhhccCCCCCCCCCcccCC
Q 019484 150 CSFCMQLPERPVTTPCGHN-FCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 150 C~iC~~~~~~pv~l~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
|-+|...-..-+.+||.|. +|..|-.. ...||+|+.....
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~-----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES-----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc-----CccCCCCcChhhc
Confidence 9999998888667799997 79999653 3469999886653
No 123
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=80.40 E-value=0.49 Score=48.57 Aligned_cols=49 Identities=27% Similarity=0.598 Sum_probs=36.9
Q ss_pred CcccccccC--CCCCCceeeeCCCCCCcccCCCCCCCCCCC-CCCCccCCCCC
Q 019484 12 DGMCMRCKE--TPVEEEQLCCKTCATPWHVACLVRPPESLA-STLLWECPDCT 61 (340)
Q Consensus 12 ~~~c~~c~~--~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~-p~~~w~c~~c~ 61 (340)
..+|-+|+. ...+..||-|..|..-||.+|++ --+... =-+.|.||.|.
T Consensus 18 ~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt-~~~~~~~l~~gWrC~~cr 69 (694)
T KOG4443|consen 18 CLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVT-SWAQHAVLSGGWRCPSCR 69 (694)
T ss_pred hhhhhhhccccccccCcchhhhhhcccCCcchhh-HHHhHHHhcCCcccCCce
Confidence 446778876 34556689999999999999999 555544 23459999994
No 124
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=80.04 E-value=1.8 Score=36.93 Aligned_cols=46 Identities=24% Similarity=0.559 Sum_probs=34.3
Q ss_pred CcccccccCCCCCCcccCCCCc-----ccchhhhhhhcc-CCCCCCCCCcccC
Q 019484 147 SLNCSFCMQLPERPVTTPCGHN-----FCLKCFQKWIGL-GKKTCAKCRCIIP 193 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l~CgH~-----FC~~Ci~~~~~~-~~~~CP~Cr~~~~ 193 (340)
+..|-||.+... +...||... .+..|+.+|+.. +...|+.|+.++.
T Consensus 8 ~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 8 DKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 457999998764 334566643 388999999874 4679999998764
No 125
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=79.80 E-value=0.72 Score=31.03 Aligned_cols=43 Identities=26% Similarity=0.680 Sum_probs=23.8
Q ss_pred ccccccCCCCCCcccCCC-CcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 149 NCSFCMQLPERPVTTPCG-HNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 149 ~C~iC~~~~~~pv~l~Cg-H~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
.|.-|.- .+--.+.|. |..|..|+...+.. +..||+|..+++.
T Consensus 4 nCKsCWf--~~k~Li~C~dHYLCl~CLt~ml~~-s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCWF--ANKGLIKCSDHYLCLNCLTLMLSR-SDRCPICGKPLPT 47 (50)
T ss_dssp ---SS-S----SSEEE-SS-EEEHHHHHHT-SS-SSEETTTTEE---
T ss_pred cChhhhh--cCCCeeeecchhHHHHHHHHHhcc-ccCCCcccCcCcc
Confidence 3444432 333345776 77899999987766 6789999998875
No 126
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=79.78 E-value=0.31 Score=45.45 Aligned_cols=47 Identities=23% Similarity=0.583 Sum_probs=35.6
Q ss_pred CcccccccCCCCC-C--cccCCCCcccchhhhhhhcc----------------------CCCCCCCCCcccC
Q 019484 147 SLNCSFCMQLPER-P--VTTPCGHNFCLKCFQKWIGL----------------------GKKTCAKCRCIIP 193 (340)
Q Consensus 147 ~~~C~iC~~~~~~-p--v~l~CgH~FC~~Ci~~~~~~----------------------~~~~CP~Cr~~~~ 193 (340)
...|.||+--|.. | +.++|-|.|...|+.+++.. -...||+||..+.
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 4579999987773 3 34699999999999987641 1247999998765
No 127
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=78.88 E-value=1 Score=42.41 Aligned_cols=48 Identities=23% Similarity=0.401 Sum_probs=37.4
Q ss_pred hcCCCcccccccCCCC---CCcccCCCCcccchhhhhhhccC--CCCCCCCCc
Q 019484 143 IFGGSLNCSFCMQLPE---RPVTTPCGHNFCLKCFQKWIGLG--KKTCAKCRC 190 (340)
Q Consensus 143 ~~~~~~~C~iC~~~~~---~pv~l~CgH~FC~~Ci~~~~~~~--~~~CP~Cr~ 190 (340)
.+..-|.|||=.+.-. .|+++.|||..-..-+...-++| .+.||.|-.
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 5666799999766544 67999999999988887766654 579999944
No 128
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.29 E-value=1.3 Score=40.32 Aligned_cols=34 Identities=29% Similarity=0.342 Sum_probs=30.0
Q ss_pred CCCcccccccCCCCCCcccCCCCcccchhhhhhh
Q 019484 145 GGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWI 178 (340)
Q Consensus 145 ~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~ 178 (340)
...-.|++|+..+.+||+++=||.||+.||..++
T Consensus 41 K~FdcCsLtLqPc~dPvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCRDPVITPDGYLFDREAILEYI 74 (303)
T ss_pred CCcceeeeecccccCCccCCCCeeeeHHHHHHHH
Confidence 3445789999999999999999999999999864
No 129
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=77.53 E-value=2.2 Score=40.55 Aligned_cols=39 Identities=28% Similarity=0.768 Sum_probs=31.6
Q ss_pred CCcccccccCCC----------CCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCC
Q 019484 11 GDGMCMRCKETP----------VEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTG 62 (340)
Q Consensus 11 ~~~~c~~c~~~~----------~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~ 62 (340)
..+.|.||++.+ .....|.|..|.+.||+.-+. ||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~-------------C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVK-------------CSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCcc-------------CCCCCC
Confidence 468999999864 234569999999999998666 889974
No 130
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=77.45 E-value=0.8 Score=34.94 Aligned_cols=48 Identities=25% Similarity=0.510 Sum_probs=30.4
Q ss_pred cccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCC
Q 019484 13 GMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGD 63 (340)
Q Consensus 13 ~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~ 63 (340)
+.|..|+-..+ +-.|.-+.|...||+.||. --|..- ...=.||-|..+
T Consensus 33 g~Cp~Ck~Pgd-~Cplv~g~C~H~FH~hCI~-kWl~~~-~~~~~CPmCR~~ 80 (85)
T PF12861_consen 33 GCCPDCKFPGD-DCPLVWGKCSHNFHMHCIL-KWLSTQ-SSKGQCPMCRQP 80 (85)
T ss_pred cCCCCccCCCC-CCceeeccCccHHHHHHHH-HHHccc-cCCCCCCCcCCe
Confidence 34445555433 3334556699999999998 555543 233489999754
No 131
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=76.85 E-value=1.1 Score=32.90 Aligned_cols=31 Identities=26% Similarity=0.695 Sum_probs=12.9
Q ss_pred cccccccCCCC-CCc--eeeeC--CCCCCcccCCCC
Q 019484 13 GMCMRCKETPV-EEE--QLCCK--TCATPWHVACLV 43 (340)
Q Consensus 13 ~~c~~c~~~~~-~~~--~l~c~--~c~~~~h~~cl~ 43 (340)
..|.+|..... .++ .+.|+ .|...||+.||.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~ 38 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLS 38 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGH
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHH
Confidence 46889987533 333 38998 899999999997
No 132
>PHA02862 5L protein; Provisional
Probab=76.69 E-value=1.9 Score=36.12 Aligned_cols=45 Identities=29% Similarity=0.659 Sum_probs=34.1
Q ss_pred ccccccCCCCCCcccCCCC-----cccchhhhhhhcc-CCCCCCCCCcccCC
Q 019484 149 NCSFCMQLPERPVTTPCGH-----NFCLKCFQKWIGL-GKKTCAKCRCIIPS 194 (340)
Q Consensus 149 ~C~iC~~~~~~pv~l~CgH-----~FC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 194 (340)
.|-||++.-.+. .-||.. ..+..|+.+|+.. ++..|+.|+.++..
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 689999876554 357664 3578999999873 46799999998864
No 133
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=76.25 E-value=0.74 Score=38.13 Aligned_cols=33 Identities=24% Similarity=0.714 Sum_probs=26.7
Q ss_pred CcccccccCCCCC--C-cccCCC------Ccccchhhhhhhc
Q 019484 147 SLNCSFCMQLPER--P-VTTPCG------HNFCLKCFQKWIG 179 (340)
Q Consensus 147 ~~~C~iC~~~~~~--p-v~l~Cg------H~FC~~Ci~~~~~ 179 (340)
...|.||++.+.. = |.++|| |.||..|+.+|..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 7889999998887 3 335777 6799999999943
No 134
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=75.96 E-value=1.9 Score=48.26 Aligned_cols=49 Identities=24% Similarity=0.581 Sum_probs=34.8
Q ss_pred CCcccccccCC-CC-CC-cccCCCCcccchhhhhhhcc---------CCCCCCCCCcccCC
Q 019484 146 GSLNCSFCMQL-PE-RP-VTTPCGHNFCLKCFQKWIGL---------GKKTCAKCRCIIPS 194 (340)
Q Consensus 146 ~~~~C~iC~~~-~~-~p-v~l~CgH~FC~~Ci~~~~~~---------~~~~CP~Cr~~~~~ 194 (340)
.+-.|-||+.- +. .| +.|.|+|.|...|..+.+.+ +-..||+|+.++..
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 34568888753 22 33 56799999999999876553 23489999887764
No 135
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=75.81 E-value=1.5 Score=37.62 Aligned_cols=51 Identities=25% Similarity=0.589 Sum_probs=38.3
Q ss_pred ccccc---cCCCCCCceeeeCCCCCCcccCCCCCCC------CCCCCCCC--ccCCCCCCCCc
Q 019484 14 MCMRC---KETPVEEEQLCCKTCATPWHVACLVRPP------ESLASTLL--WECPDCTGDAA 65 (340)
Q Consensus 14 ~c~~c---~~~~~~~~~l~c~~c~~~~h~~cl~~p~------~~~~p~~~--w~c~~c~~~~~ 65 (340)
+|.+| +....-..|+.|-+|-..||-.||- |- .|.|..++ .+|-.|.+-..
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG-~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~ 62 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLG-PRSQREHLVTKVGDDDFVLQCRRCIGIAH 62 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcC-CccccceeeEEEcCCceEEechhhcChhh
Confidence 47788 4566677899999999999999998 63 34555553 57888866554
No 136
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=75.10 E-value=1 Score=35.84 Aligned_cols=50 Identities=24% Similarity=0.747 Sum_probs=34.9
Q ss_pred CcccccccCCCCCCceeee------CCC---CCCcccCCCCCC----CCCCCCCCCccCCCCCC
Q 019484 12 DGMCMRCKETPVEEEQLCC------KTC---ATPWHVACLVRP----PESLASTLLWECPDCTG 62 (340)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c------~~c---~~~~h~~cl~~p----~~~~~p~~~w~c~~c~~ 62 (340)
-..|+.|++...+..+ .| ..| ...|-..||... +...+..++|.||.|..
T Consensus 7 g~~CHqCrqKt~~~~~-~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 7 GKTCHQCRQKTLDFKT-ICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCchhhcCCCCCCce-EcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 3569999998765554 55 666 888988997622 12234578999999964
No 137
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=74.53 E-value=2.6 Score=31.42 Aligned_cols=48 Identities=17% Similarity=0.461 Sum_probs=21.7
Q ss_pred CcccccccCCCC-----CCcc--cCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 147 SLNCSFCMQLPE-----RPVT--TPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 147 ~~~C~iC~~~~~-----~pv~--l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
...|.||-+.+- ++.+ -.|+--.|+.|.+--.+.++..||.|+..+..
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 457999987654 2222 26787889999987777788899999987764
No 138
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=74.22 E-value=1.9 Score=29.03 Aligned_cols=39 Identities=31% Similarity=0.967 Sum_probs=23.3
Q ss_pred cccccCCCCC--CcccCCCC-----cccchhhhhhhcc-CCCCCCCC
Q 019484 150 CSFCMQLPER--PVTTPCGH-----NFCLKCFQKWIGL-GKKTCAKC 188 (340)
Q Consensus 150 C~iC~~~~~~--pv~l~CgH-----~FC~~Ci~~~~~~-~~~~CP~C 188 (340)
|-||++.-.. |...||.- .....|+.+|+.. +...|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 5677765542 45567763 3578899999873 45678887
No 139
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=73.96 E-value=1.8 Score=41.97 Aligned_cols=31 Identities=35% Similarity=0.903 Sum_probs=23.4
Q ss_pred CCCcccchhhhhhhcc------------CCCCCCCCCcccCCC
Q 019484 165 CGHNFCLKCFQKWIGL------------GKKTCAKCRCIIPSK 195 (340)
Q Consensus 165 CgH~FC~~Ci~~~~~~------------~~~~CP~Cr~~~~~~ 195 (340)
|....|..|+.+|+.. ++..||+||+.|-..
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 4445688999999762 346999999998653
No 140
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.58 E-value=2 Score=37.20 Aligned_cols=54 Identities=19% Similarity=0.390 Sum_probs=35.8
Q ss_pred hhhcCCCcccccccCCCC-----CCcc--cCCCCcccchhhhhhhcc----C------CCCCCCCCcccCC
Q 019484 141 SDIFGGSLNCSFCMQLPE-----RPVT--TPCGHNFCLKCFQKWIGL----G------KKTCAKCRCIIPS 194 (340)
Q Consensus 141 ~~~~~~~~~C~iC~~~~~-----~pv~--l~CgH~FC~~Ci~~~~~~----~------~~~CP~Cr~~~~~ 194 (340)
++.-++..-|.||..+-- +.+. +.||..|..-|+..|++. + -..||.|..++..
T Consensus 159 Lekdd~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 159 LEKDDELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred cCcchhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 333444456777765432 1222 479999999999999872 1 1389999888764
No 141
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=71.23 E-value=1.3 Score=26.60 Aligned_cols=28 Identities=21% Similarity=0.435 Sum_probs=12.2
Q ss_pred ccccccCCCCCCceeeeCCCCCCcccCC
Q 019484 14 MCMRCKETPVEEEQLCCKTCATPWHVAC 41 (340)
Q Consensus 14 ~c~~c~~~~~~~~~l~c~~c~~~~h~~c 41 (340)
.|.+|+..........|..|+-..|+.|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhc
Confidence 4789999877778899999999999876
No 142
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=71.07 E-value=4.5 Score=38.43 Aligned_cols=40 Identities=30% Similarity=0.787 Sum_probs=31.4
Q ss_pred CCcccccccCCC-----------CCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCC
Q 019484 11 GDGMCMRCKETP-----------VEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGD 63 (340)
Q Consensus 11 ~~~~c~~c~~~~-----------~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~ 63 (340)
+-+.|.||++.+ .....|.|..|.+.||+.-+. ||.|-..
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~-------------C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVK-------------CSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCcc-------------CCCCCCC
Confidence 456999999864 223569999999999998666 8899753
No 143
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.27 E-value=2 Score=39.88 Aligned_cols=34 Identities=29% Similarity=0.707 Sum_probs=29.2
Q ss_pred CCcccccccCCCCCCcccCCC----Ccccchhhhhhhc
Q 019484 146 GSLNCSFCMQLPERPVTTPCG----HNFCLKCFQKWIG 179 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv~l~Cg----H~FC~~Ci~~~~~ 179 (340)
..|.|.+|.+.+.+--.+.|- |.||..|-...++
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK 304 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIK 304 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHH
Confidence 358999999999998777775 9999999888766
No 144
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=68.79 E-value=4.6 Score=34.79 Aligned_cols=22 Identities=32% Similarity=0.912 Sum_probs=18.1
Q ss_pred CCceeeeCCCCCCcccCCCCCCC
Q 019484 24 EEEQLCCKTCATPWHVACLVRPP 46 (340)
Q Consensus 24 ~~~~l~c~~c~~~~h~~cl~~p~ 46 (340)
+..|..|..|-++||+.-|. |+
T Consensus 121 ~nVLFRC~~C~RawH~~HLP-~~ 142 (175)
T PF15446_consen 121 DNVLFRCTSCHRAWHFEHLP-PP 142 (175)
T ss_pred hheEEecCCccceeehhhCC-CC
Confidence 34457899999999999998 54
No 145
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.28 E-value=5 Score=29.46 Aligned_cols=27 Identities=19% Similarity=0.624 Sum_probs=22.0
Q ss_pred CCcccchhhhhhhccCCCCCCCCCcccCCC
Q 019484 166 GHNFCLKCFQKWIGLGKKTCAKCRCIIPSK 195 (340)
Q Consensus 166 gH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 195 (340)
.|+||..|.+..+ ...||.|.-.+..+
T Consensus 28 EcTFCadCae~~l---~g~CPnCGGelv~R 54 (84)
T COG3813 28 ECTFCADCAENRL---HGLCPNCGGELVAR 54 (84)
T ss_pred eeehhHhHHHHhh---cCcCCCCCchhhcC
Confidence 4789999998777 45899999888764
No 146
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.70 E-value=5.2 Score=36.68 Aligned_cols=56 Identities=11% Similarity=0.113 Sum_probs=39.8
Q ss_pred CCCcccccccCCCCC----CcccCCCCcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCcc
Q 019484 145 GGSLNCSFCMQLPER----PVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRIN 203 (340)
Q Consensus 145 ~~~~~C~iC~~~~~~----pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n 203 (340)
...|.|||-.-.|.. -+...|||.|-..-+...- ...|++|...+....+-.++.+
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIvlNg~ 168 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIVLNGT 168 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEeeCCC
Confidence 357899987655553 3445999999988877654 4589999999987654444444
No 147
>PRK04023 DNA polymerase II large subunit; Validated
Probab=62.36 E-value=26 Score=38.41 Aligned_cols=91 Identities=13% Similarity=0.186 Sum_probs=51.9
Q ss_pred CCcccccccCCCCCCcccCCCC-----cccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHHhhCCCC
Q 019484 146 GSLNCSFCMQLPERPVTTPCGH-----NFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAKRSNTTV 220 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv~l~CgH-----~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~~~~~~~ 220 (340)
....|+-|-........-.||. .||..|-... ....||.|...........+.+...+..+++.+.....
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~~---~~y~CPKCG~El~~~s~~~i~l~~~~~~A~~~lg~~~~-- 699 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIEV---EEDECEKCGREPTPYSKRKIDLKELYDRALENLGERKN-- 699 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccccCcC---CCCcCCCCCCCCCccceEEecHHHHHHHHHHHhCCcCC--
Confidence 4568999998876555567984 5999994332 24579999998876433344444444444444433332
Q ss_pred CCCCCcceeecccCCCCchhh
Q 019484 221 PGGPSKIYHFVHNQDRPDKAY 241 (340)
Q Consensus 221 ~~~~~~~~~~~~~~~~p~~a~ 241 (340)
...-.-+......+..|++-.
T Consensus 700 ~~~~KGVkgl~S~~k~~EPlE 720 (1121)
T PRK04023 700 FDEVKGVKGLTSKDKIPEPLE 720 (1121)
T ss_pred ccccccceecccCCCCCcchH
Confidence 122233333344444454443
No 148
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=61.48 E-value=5.4 Score=23.37 Aligned_cols=9 Identities=22% Similarity=0.397 Sum_probs=4.8
Q ss_pred cccccCCCC
Q 019484 150 CSFCMQLPE 158 (340)
Q Consensus 150 C~iC~~~~~ 158 (340)
||-|...+.
T Consensus 3 CP~C~~~V~ 11 (26)
T PF10571_consen 3 CPECGAEVP 11 (26)
T ss_pred CCCCcCCch
Confidence 555555443
No 149
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.12 E-value=4.3 Score=40.69 Aligned_cols=35 Identities=29% Similarity=0.909 Sum_probs=29.7
Q ss_pred CCCcccccccCCCCC-CcccCCCCcccchhhhhhhc
Q 019484 145 GGSLNCSFCMQLPER-PVTTPCGHNFCLKCFQKWIG 179 (340)
Q Consensus 145 ~~~~~C~iC~~~~~~-pv~l~CgH~FC~~Ci~~~~~ 179 (340)
.....|.||.+.+.. .+.+.|||.||..|+..++.
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhh
Confidence 345789999999885 66679999999999998776
No 150
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=58.52 E-value=6.2 Score=30.46 Aligned_cols=37 Identities=35% Similarity=0.747 Sum_probs=29.3
Q ss_pred CcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccC
Q 019484 147 SLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
.-.|.||...+..+ ||.||..|..+ ...|.+|...+.
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAYk-----kGiCamCGKki~ 80 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAYK-----KGICAMCGKKIL 80 (90)
T ss_pred CccccccccccccC-----CCccChhhhcc-----cCcccccCCeec
Confidence 45799999877765 88999999643 458999988774
No 151
>COG3440 Predicted restriction endonuclease [Defense mechanisms]
Probab=57.74 E-value=1.7 Score=40.71 Aligned_cols=47 Identities=17% Similarity=-0.039 Sum_probs=40.0
Q ss_pred hhhhhhcccCCCcCCccCCCCCCcEEEEecCccccCCCCCceEEEec
Q 019484 293 LECRQWGVHYPPVAGIAGQSKCGAQSVVLSGGYEDDEDHGEWFLYTG 339 (340)
Q Consensus 293 ~~~~~~g~h~~~~~Gi~~~~~~ga~si~~sg~y~~d~d~g~~~~ytg 339 (340)
...+.++.|-|.+.++.|....++++++.+|+|+++.+.+++.+|++
T Consensus 22 ~~~~~~a~~kp~l~l~v~~~~~~~~~~~n~~~~~~e~~~~f~~l~~~ 68 (301)
T COG3440 22 GGNREAAPHKPILLLDVGRKISTFFITENQGIYETELIEPFIQLWSF 68 (301)
T ss_pred ccccccCCcCceeehhhHhhhhcccccccccccchhccchHHHHHhh
Confidence 44566799999999999999999999999999999888877766653
No 152
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=56.97 E-value=6 Score=37.20 Aligned_cols=41 Identities=29% Similarity=0.766 Sum_probs=21.5
Q ss_pred CcccccccCCC-------C---CCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 12 DGMCMRCKETP-------V---EEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 12 ~~~c~~c~~~~-------~---~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
.+.|.||++.+ . ....|.|..|.+.||+.-+. ||.|-....
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~-------------Cp~Cg~~~~ 222 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIK-------------CPYCGNTDH 222 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS--------------TTT---SS
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCC-------------CcCCCCCCC
Confidence 48999999853 2 23779999999999998555 999987665
No 153
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=55.73 E-value=4 Score=38.02 Aligned_cols=49 Identities=24% Similarity=0.523 Sum_probs=36.0
Q ss_pred CcccccccC------CCCCCceeeeCCCCCCcccCCCCCCCCCCC---CCCCccCCCCC
Q 019484 12 DGMCMRCKE------TPVEEEQLCCKTCATPWHVACLVRPPESLA---STLLWECPDCT 61 (340)
Q Consensus 12 ~~~c~~c~~------~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~---p~~~w~c~~c~ 61 (340)
...|.+|-+ .+..+.+++|..|...||-+||. =+...| -.-.|.|-.|.
T Consensus 258 ~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~-M~~elv~~~KTY~W~C~~C~ 315 (381)
T KOG1512|consen 258 RNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVA-MIPELVGQYKTYFWKCSSCE 315 (381)
T ss_pred hhhhhhhhcchhhhhhhhhccceeecccccCCCCcchh-cCHHHHhHHhhcchhhcccH
Confidence 345666654 34567889999999999999999 444433 34479999995
No 154
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=55.64 E-value=6.2 Score=31.20 Aligned_cols=30 Identities=23% Similarity=0.610 Sum_probs=26.2
Q ss_pred CcccccccCCCCCCceeeeCC--CCCCcccCCCC
Q 019484 12 DGMCMRCKETPVEEEQLCCKT--CATPWHVACLV 43 (340)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~--c~~~~h~~cl~ 43 (340)
...|.+|++. ....+.|.. |.+.||..|..
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHH
Confidence 5789999997 357899999 99999999987
No 155
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=55.03 E-value=12 Score=39.44 Aligned_cols=72 Identities=17% Similarity=0.289 Sum_probs=50.6
Q ss_pred hhhcCCCcccccccCCCCCCccc-CCCCcccchhhhhhh---ccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHHh
Q 019484 141 SDIFGGSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWI---GLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAKR 215 (340)
Q Consensus 141 ~~~~~~~~~C~iC~~~~~~pv~l-~CgH~FC~~Ci~~~~---~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~~ 215 (340)
...+.-.|.|+|+.-.+.-|+.- .|.|.=|..-+.-.. +...+.||+|.+.+.- +.+.++..+.+++..+..
T Consensus 300 tt~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~---e~l~iD~~~~~iL~~~~~ 375 (636)
T KOG2169|consen 300 TTSLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPF---EGLIIDGYFLNILQSCQA 375 (636)
T ss_pred eccceeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccccc---cchhhhHHHHHHHhhccC
Confidence 34556689999999888877654 788876665433211 1347899999987765 478888877777766644
No 156
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.89 E-value=5 Score=42.95 Aligned_cols=36 Identities=25% Similarity=0.605 Sum_probs=28.2
Q ss_pred cCCCcccccccCCCC-CCccc-CCCCcccchhhhhhhc
Q 019484 144 FGGSLNCSFCMQLPE-RPVTT-PCGHNFCLKCFQKWIG 179 (340)
Q Consensus 144 ~~~~~~C~iC~~~~~-~pv~l-~CgH~FC~~Ci~~~~~ 179 (340)
++..-.|.+|...+. .|..+ +|||.|...|+.+...
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 445668999998555 67555 9999999999998654
No 157
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=54.52 E-value=11 Score=29.29 Aligned_cols=35 Identities=14% Similarity=0.312 Sum_probs=26.6
Q ss_pred CCCCCcccccccCCCCCCceeeeCCCCCCcccCCCC
Q 019484 8 PCNGDGMCMRCKETPVEEEQLCCKTCATPWHVACLV 43 (340)
Q Consensus 8 ~~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~ 43 (340)
-.+++..|.+|++.-........ .|+..+|..|+.
T Consensus 74 ~i~~~~~C~vC~k~l~~~~f~~~-p~~~v~H~~C~~ 108 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGNSVFVVF-PCGHVVHYSCIK 108 (109)
T ss_pred EECCCCCccCcCCcCCCceEEEe-CCCeEEeccccc
Confidence 35678899999997766555444 356999999986
No 158
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=54.32 E-value=11 Score=26.28 Aligned_cols=26 Identities=19% Similarity=0.654 Sum_probs=21.1
Q ss_pred CcccchhhhhhhccCCCCCCCCCcccCCC
Q 019484 167 HNFCLKCFQKWIGLGKKTCAKCRCIIPSK 195 (340)
Q Consensus 167 H~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 195 (340)
.+||..|....+. ..||.|.-.+..+
T Consensus 29 CTFC~~C~e~~l~---~~CPNCgGelv~R 54 (57)
T PF06906_consen 29 CTFCADCAETMLN---GVCPNCGGELVRR 54 (57)
T ss_pred CcccHHHHHHHhc---CcCcCCCCccccC
Confidence 4799999998774 4799998887764
No 159
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=53.76 E-value=7.7 Score=38.80 Aligned_cols=51 Identities=20% Similarity=0.293 Sum_probs=37.8
Q ss_pred CcccccccCCCCC--CceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 12 DGMCMRCKETPVE--EEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 12 ~~~c~~c~~~~~~--~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
...|.+|...... .++..|+.|-++||-.|-. |+. .-.+.|.+..|..+..
T Consensus 83 e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i-~~~--~~~~~~~~~~c~~~~~ 135 (464)
T KOG4323|consen 83 ELNPNVLTSETVLPENEKVICGRCKSGYHQGCNI-PRF--PSLDIGESTECVFPIF 135 (464)
T ss_pred ccCCcccccccccCchhhhhhhhhccCcccccCc-cCc--CcCCcccccccccccc
Confidence 3457788875544 4778999999999999999 753 3356788888775554
No 160
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=52.99 E-value=12 Score=29.66 Aligned_cols=28 Identities=32% Similarity=0.649 Sum_probs=21.3
Q ss_pred CCcccchhhhhhhc--------cCCCCCCCCCcccC
Q 019484 166 GHNFCLKCFQKWIG--------LGKKTCAKCRCIIP 193 (340)
Q Consensus 166 gH~FC~~Ci~~~~~--------~~~~~CP~Cr~~~~ 193 (340)
.-.||..||..... ...+.||.||....
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCn 72 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICN 72 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeC
Confidence 66799999887654 35689999987543
No 161
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=52.78 E-value=15 Score=22.04 Aligned_cols=28 Identities=25% Similarity=0.529 Sum_probs=22.4
Q ss_pred ccccccCCCCCCceeeeCCCCCCcccCC
Q 019484 14 MCMRCKETPVEEEQLCCKTCATPWHVAC 41 (340)
Q Consensus 14 ~c~~c~~~~~~~~~l~c~~c~~~~h~~c 41 (340)
.|.+|++..+....-.|+.|.-..|..|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCCCeEcCcc
Confidence 4889988766554888999998888877
No 162
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=52.72 E-value=9.6 Score=38.29 Aligned_cols=52 Identities=21% Similarity=0.444 Sum_probs=38.3
Q ss_pred ccccccC--CCCCCceeeeCCCCCCcccCCCCCCCCCCCCC-------CCccCCCCCCCCc
Q 019484 14 MCMRCKE--TPVEEEQLCCKTCATPWHVACLVRPPESLAST-------LLWECPDCTGDAA 65 (340)
Q Consensus 14 ~c~~c~~--~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~-------~~w~c~~c~~~~~ 65 (340)
.|-||-. ..+.+++|.||.|.-.-|-.|--.---..||. .-|||..|.....
T Consensus 121 iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs 181 (707)
T KOG0957|consen 121 ICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVS 181 (707)
T ss_pred EEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCC
Confidence 6889965 45667899999999999999976222223343 3599999987664
No 163
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.57 E-value=6.5 Score=36.77 Aligned_cols=31 Identities=23% Similarity=0.584 Sum_probs=23.6
Q ss_pred CCCcccchhhhhhhc------------cCCCCCCCCCcccCCC
Q 019484 165 CGHNFCLKCFQKWIG------------LGKKTCAKCRCIIPSK 195 (340)
Q Consensus 165 CgH~FC~~Ci~~~~~------------~~~~~CP~Cr~~~~~~ 195 (340)
|....|.+|+.+|+. .++..||+||+.+..+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 445678899999865 2467999999988654
No 164
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.19 E-value=36 Score=34.02 Aligned_cols=74 Identities=19% Similarity=0.254 Sum_probs=51.4
Q ss_pred hhhcCCCcccccc-cCCCCCCccc--CCCCcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHHhhC
Q 019484 141 SDIFGGSLNCSFC-MQLPERPVTT--PCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAKRSN 217 (340)
Q Consensus 141 ~~~~~~~~~C~iC-~~~~~~pv~l--~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~~~~ 217 (340)
.-.+.+.+.|++| ...|....++ -|.-+||..||.+.+.. ..++.|.+.-... ..+..+..++..+.......
T Consensus 213 v~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~--~~~~~c~~~~~~~--~~~~~p~~~r~~~n~~~a~~ 288 (448)
T KOG0314|consen 213 VGELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALIS--KSMCVCGASNVLA--DDLLPPKTLRDTINRILASG 288 (448)
T ss_pred hccCCccccCceecchhhHHHHHhhhhhcccCCcccccccccc--ccCCcchhhcccc--cccCCchhhHHHHHHHHhhh
Confidence 3456678999999 8888887777 58899999999987653 3556665433221 25566677777777666655
Q ss_pred C
Q 019484 218 T 218 (340)
Q Consensus 218 ~ 218 (340)
+
T Consensus 289 n 289 (448)
T KOG0314|consen 289 N 289 (448)
T ss_pred c
Confidence 5
No 165
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=49.92 E-value=7.8 Score=22.16 Aligned_cols=12 Identities=50% Similarity=0.908 Sum_probs=9.1
Q ss_pred CCccCCCCCCCC
Q 019484 53 LLWECPDCTGDA 64 (340)
Q Consensus 53 ~~w~c~~c~~~~ 64 (340)
|+|.|+.|....
T Consensus 1 g~W~C~~C~~~N 12 (26)
T smart00547 1 GDWECPACTFLN 12 (26)
T ss_pred CcccCCCCCCcC
Confidence 689999996433
No 166
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.71 E-value=11 Score=36.46 Aligned_cols=48 Identities=27% Similarity=0.526 Sum_probs=34.6
Q ss_pred ccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 14 MCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 14 ~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
.|-+|-..=.+.+.|.==.|.+.||..|.+ |=|+.- .=+||-|..+..
T Consensus 231 ~CaIClEdY~~GdklRiLPC~H~FH~~CID-pWL~~~---r~~CPvCK~di~ 278 (348)
T KOG4628|consen 231 TCAICLEDYEKGDKLRILPCSHKFHVNCID-PWLTQT---RTFCPVCKRDIR 278 (348)
T ss_pred eEEEeecccccCCeeeEecCCCchhhccch-hhHhhc---CccCCCCCCcCC
Confidence 899999876666654444566999999999 854411 226999987655
No 167
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=49.13 E-value=2.4 Score=34.36 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=28.8
Q ss_pred CcccccccCCCCC-----CcccCCCCcccchhhhhhhccCCCCCCCCCc
Q 019484 147 SLNCSFCMQLPER-----PVTTPCGHNFCLKCFQKWIGLGKKTCAKCRC 190 (340)
Q Consensus 147 ~~~C~iC~~~~~~-----pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~ 190 (340)
...|.+|...|.. .+...|.|.+|..|-........+.|-+|.+
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHH
Confidence 4579999876542 2335799999999977633344678888854
No 168
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=48.98 E-value=7.6 Score=23.19 Aligned_cols=11 Identities=45% Similarity=1.069 Sum_probs=9.3
Q ss_pred CCCccCCCCCC
Q 019484 52 TLLWECPDCTG 62 (340)
Q Consensus 52 ~~~w~c~~c~~ 62 (340)
+|+|.|+.|..
T Consensus 2 ~g~W~C~~C~~ 12 (30)
T PF00641_consen 2 EGDWKCPSCTF 12 (30)
T ss_dssp SSSEEETTTTE
T ss_pred CcCccCCCCcC
Confidence 58999999964
No 169
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=48.46 E-value=9.3 Score=26.24 Aligned_cols=39 Identities=15% Similarity=0.397 Sum_probs=23.5
Q ss_pred CCcccccccCCCCCCcccCCCCcccchhhhhhhc-cCCCCCCCCCcc
Q 019484 146 GSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIG-LGKKTCAKCRCI 191 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~-~~~~~CP~Cr~~ 191 (340)
+.+.||.|...+... .+...|...... .....||+|...
T Consensus 1 ~~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CCcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchhh
Confidence 368899999955431 233444444333 235789999753
No 170
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=48.37 E-value=27 Score=39.26 Aligned_cols=69 Identities=14% Similarity=0.320 Sum_probs=42.7
Q ss_pred CcccccccCCCCCCcccCCCCc-----ccchhhhhhhc--cCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHHh
Q 019484 147 SLNCSFCMQLPERPVTTPCGHN-----FCLKCFQKWIG--LGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAKR 215 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l~CgH~-----FC~~Ci~~~~~--~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~~ 215 (340)
.+.||-|-.......+-.||.. +|..|-...-. .....||.|..++.......+.+...+..+++.+..
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~~~~i~~~~~~~~A~~~~g~ 742 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQRRTINVKEEYRSALENVGE 742 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccceEEecHHHHHHHHHHHhCc
Confidence 3789999986655555568854 48888664322 113479999988765433344555555555555443
No 171
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=48.05 E-value=14 Score=24.85 Aligned_cols=34 Identities=21% Similarity=0.454 Sum_probs=26.9
Q ss_pred CCCcccccccCCC--CCCceeeeCCCCCCcccCCCC
Q 019484 10 NGDGMCMRCKETP--VEEEQLCCKTCATPWHVACLV 43 (340)
Q Consensus 10 ~~~~~c~~c~~~~--~~~~~l~c~~c~~~~h~~cl~ 43 (340)
.....|.+|++.- ..-+-+.|..|....|..|+.
T Consensus 9 ~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~ 44 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLS 44 (53)
T ss_dssp SSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGC
T ss_pred CCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhh
Confidence 4567899999965 556779999999999999998
No 172
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=47.64 E-value=13 Score=38.37 Aligned_cols=46 Identities=30% Similarity=0.718 Sum_probs=36.8
Q ss_pred cccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCC-CCCCccCCCCCC
Q 019484 13 GMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLA-STLLWECPDCTG 62 (340)
Q Consensus 13 ~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~-p~~~w~c~~c~~ 62 (340)
..|.+|+++. .+|+|+.|+..+|..|-. ++|..- +.+.|.|-.|.-
T Consensus 48 ts~~~~~~~g---n~~~~~~~~~s~h~~~~~-~~~sp~~~~~~~~~~~~~~ 94 (613)
T KOG4299|consen 48 TSCGICKSGG---NLLCCDHCPASFHLECDK-PPLSPDLKGSEINCSRCPK 94 (613)
T ss_pred hhcchhhhcC---CccccccCccccchhccC-cccCcccccccccccCCCc
Confidence 4688888875 899999999999999999 888732 234788887754
No 173
>PF12773 DZR: Double zinc ribbon
Probab=47.58 E-value=20 Score=23.92 Aligned_cols=28 Identities=29% Similarity=0.596 Sum_probs=16.8
Q ss_pred Ccccchhhhhhh--ccCCCCCCCCCcccCC
Q 019484 167 HNFCLKCFQKWI--GLGKKTCAKCRCIIPS 194 (340)
Q Consensus 167 H~FC~~Ci~~~~--~~~~~~CP~Cr~~~~~ 194 (340)
-.||..|-.... ......||.|...+..
T Consensus 12 ~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~ 41 (50)
T PF12773_consen 12 AKFCPHCGTPLPPPDQSKKICPNCGAENPP 41 (50)
T ss_pred ccCChhhcCChhhccCCCCCCcCCcCCCcC
Confidence 456666665544 2335678888776543
No 174
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=47.00 E-value=15 Score=25.14 Aligned_cols=14 Identities=29% Similarity=0.816 Sum_probs=10.3
Q ss_pred CCCCCccCCCCCCCC
Q 019484 50 ASTLLWECPDCTGDA 64 (340)
Q Consensus 50 ~p~~~w~c~~c~~~~ 64 (340)
+|+ +|.||.|..+.
T Consensus 31 Lp~-~w~CP~C~a~K 44 (50)
T cd00730 31 LPD-DWVCPVCGAGK 44 (50)
T ss_pred CCC-CCCCCCCCCcH
Confidence 444 89999997643
No 175
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=45.93 E-value=6.4 Score=38.09 Aligned_cols=52 Identities=27% Similarity=0.441 Sum_probs=34.0
Q ss_pred CcCCCCCCcccccccCC-CCCC------------ceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 5 IQLPCNGDGMCMRCKET-PVEE------------EQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 5 ~~~~~~~~~~c~~c~~~-~~~~------------~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
+|| =.+|..|.+|.+. -.++ .-|.|+ +-+|+.||+ -=++ -.=-||-|..+..
T Consensus 281 eql-~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCG---HilHl~CLk-nW~E----RqQTCPICr~p~i 345 (491)
T COG5243 281 EQL-TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCG---HILHLHCLK-NWLE----RQQTCPICRRPVI 345 (491)
T ss_pred hhh-cCCCCeEEEecccccCCCCccCcccccCCccccccc---ceeeHHHHH-HHHH----hccCCCcccCccc
Confidence 455 5679999999986 2222 456666 558999999 2110 1125999987744
No 176
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.54 E-value=3.1 Score=40.68 Aligned_cols=33 Identities=33% Similarity=0.655 Sum_probs=24.9
Q ss_pred CCcccccccCCCCCC------cccCCCCcccchhhhhhh
Q 019484 146 GSLNCSFCMQLPERP------VTTPCGHNFCLKCFQKWI 178 (340)
Q Consensus 146 ~~~~C~iC~~~~~~p------v~l~CgH~FC~~Ci~~~~ 178 (340)
..-.||-|.-.+... ..+.|+|.||+.|.....
T Consensus 367 N~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~l~ 405 (445)
T KOG1814|consen 367 NSKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAELLY 405 (445)
T ss_pred cCCCCCcccceeecCCCccceeeccccccceeehhhhcC
Confidence 345799999888743 567899999999876544
No 177
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.09 E-value=14 Score=34.88 Aligned_cols=49 Identities=24% Similarity=0.556 Sum_probs=39.6
Q ss_pred CCCcccccccCCCCCCccc-CCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 145 GGSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 145 ~~~~~C~iC~~~~~~pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
...-.|.+|...+.-|... .|+|-||..|...|... ...|+.|+.....
T Consensus 103 ~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~-~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAM-GNDCPDCRGKISP 152 (324)
T ss_pred CCccceeeeeeeEEecccccCceeeeeecCCchhhhh-hhccchhhcCcCc
Confidence 3456799999999999887 59999999999988775 4578888876554
No 178
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=43.68 E-value=9 Score=21.67 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=10.2
Q ss_pred ccchhhhhhhccCCCCCCCCCcc
Q 019484 169 FCLKCFQKWIGLGKKTCAKCRCI 191 (340)
Q Consensus 169 FC~~Ci~~~~~~~~~~CP~Cr~~ 191 (340)
||..|-.+.... ...||.|.++
T Consensus 1 ~Cp~CG~~~~~~-~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIEDD-AKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCCCc-CcchhhhCCc
Confidence 344444433322 4456666554
No 179
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=43.67 E-value=9.1 Score=27.65 Aligned_cols=12 Identities=42% Similarity=1.301 Sum_probs=8.8
Q ss_pred cccchhhhhhhc
Q 019484 168 NFCLKCFQKWIG 179 (340)
Q Consensus 168 ~FC~~Ci~~~~~ 179 (340)
.||+.|+.+|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 180
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=39.75 E-value=16 Score=24.94 Aligned_cols=31 Identities=29% Similarity=0.519 Sum_probs=21.6
Q ss_pred ccccccCCCCC----CcccCCCCcccchhhhhhhc
Q 019484 149 NCSFCMQLPER----PVTTPCGHNFCLKCFQKWIG 179 (340)
Q Consensus 149 ~C~iC~~~~~~----pv~l~CgH~FC~~Ci~~~~~ 179 (340)
.|.+|...|.. .....||+.||..|......
T Consensus 4 ~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 4 SCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred cCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 57888765552 22347999999999876543
No 181
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=39.71 E-value=22 Score=24.76 Aligned_cols=38 Identities=24% Similarity=0.398 Sum_probs=27.8
Q ss_pred ccccccCC-----CCCCceeeeCCCCCCcccCCCCCCCCCCCC
Q 019484 14 MCMRCKET-----PVEEEQLCCKTCATPWHVACLVRPPESLAS 51 (340)
Q Consensus 14 ~c~~c~~~-----~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p 51 (340)
.|.+|+.. +...+++-|..|...|-...++++-|..+|
T Consensus 4 ~CP~CG~~iev~~~~~GeiV~Cp~CGaeleVv~~~p~~L~~ap 46 (54)
T TIGR01206 4 ECPDCGAEIELENPELGELVICDECGAELEVVSLDPLRLEAAP 46 (54)
T ss_pred CCCCCCCEEecCCCccCCEEeCCCCCCEEEEEeCCCCEEEeCc
Confidence 68888872 233578999999999999999944444444
No 182
>PLN02189 cellulose synthase
Probab=38.63 E-value=21 Score=39.33 Aligned_cols=47 Identities=19% Similarity=0.511 Sum_probs=35.6
Q ss_pred cccccccCCCC-----CCc--ccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 148 LNCSFCMQLPE-----RPV--TTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 148 ~~C~iC~~~~~-----~pv--~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
..|.||-+.+- ++. .-.|+--.|..|.+--.+.++..||.|++.+..
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 47999999765 221 125777789999976667788999999998863
No 183
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=37.64 E-value=48 Score=35.57 Aligned_cols=47 Identities=23% Similarity=0.732 Sum_probs=36.1
Q ss_pred CcccccccC--CCCCCcccCCCCc-----ccchhhhhhhcc-CCCCCCCCCcccC
Q 019484 147 SLNCSFCMQ--LPERPVTTPCGHN-----FCLKCFQKWIGL-GKKTCAKCRCIIP 193 (340)
Q Consensus 147 ~~~C~iC~~--~~~~pv~l~CgH~-----FC~~Ci~~~~~~-~~~~CP~Cr~~~~ 193 (340)
..+|.||.. .-.+|..-||..+ .+..|+..|+.- +...|-+|..++.
T Consensus 12 ~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 12 KRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred chhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 467999875 4557777788754 578899999983 4679999998764
No 184
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.44 E-value=15 Score=36.16 Aligned_cols=43 Identities=30% Similarity=0.704 Sum_probs=29.3
Q ss_pred CCCcccccccCCCCC-----CcccCCCCcccchhhhhhhccCCCCCCCC
Q 019484 145 GGSLNCSFCMQLPER-----PVTTPCGHNFCLKCFQKWIGLGKKTCAKC 188 (340)
Q Consensus 145 ~~~~~C~iC~~~~~~-----pv~l~CgH~FC~~Ci~~~~~~~~~~CP~C 188 (340)
..-..|+.|...+.. -++=.|||-||+.|...|... ...|..|
T Consensus 304 ~~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~-~~~~~~~ 351 (384)
T KOG1812|consen 304 KRWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTH-NGECYEC 351 (384)
T ss_pred HhcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhC-CccccCc
Confidence 345779999887652 233359999999999888664 3345443
No 185
>PLN02436 cellulose synthase A
Probab=37.06 E-value=23 Score=39.15 Aligned_cols=46 Identities=22% Similarity=0.613 Sum_probs=35.3
Q ss_pred cccccccCCCC-----CCc--ccCCCCcccchhhhhhhccCCCCCCCCCcccC
Q 019484 148 LNCSFCMQLPE-----RPV--TTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 148 ~~C~iC~~~~~-----~pv--~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
..|.||-+.+- ++. .-.|+--.|..|.+--.+.++..||.|++.+.
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 47999998764 222 12577778999997666677899999999886
No 186
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=37.03 E-value=23 Score=22.34 Aligned_cols=28 Identities=29% Similarity=0.813 Sum_probs=20.3
Q ss_pred eeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCC
Q 019484 28 LCCKTCATPWHVACLVRPPESLASTLLWECPDCTG 62 (340)
Q Consensus 28 l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~ 62 (340)
..|..|.+.||+. .. || +-+..|..|-.
T Consensus 2 r~C~~Cg~~Yh~~-~~-pP-----~~~~~Cd~cg~ 29 (36)
T PF05191_consen 2 RICPKCGRIYHIE-FN-PP-----KVEGVCDNCGG 29 (36)
T ss_dssp EEETTTTEEEETT-TB--------SSTTBCTTTTE
T ss_pred cCcCCCCCccccc-cC-CC-----CCCCccCCCCC
Confidence 4799999999997 34 43 44688988865
No 187
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.85 E-value=6 Score=37.14 Aligned_cols=44 Identities=20% Similarity=0.546 Sum_probs=34.9
Q ss_pred cccccccCCCC------CCcccC--------CCCcccchhhhhhhccCCCCCCCCCcc
Q 019484 148 LNCSFCMQLPE------RPVTTP--------CGHNFCLKCFQKWIGLGKKTCAKCRCI 191 (340)
Q Consensus 148 ~~C~iC~~~~~------~pv~l~--------CgH~FC~~Ci~~~~~~~~~~CP~Cr~~ 191 (340)
..|.||...+. .|.++. |||+.|..|+...+.+....||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 56888887666 355566 999999999999877655899999864
No 188
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.71 E-value=23 Score=32.70 Aligned_cols=50 Identities=20% Similarity=0.477 Sum_probs=35.7
Q ss_pred CCcccccccCCCCCCc----ccCCC-----CcccchhhhhhhccC-------CCCCCCCCcccCCC
Q 019484 146 GSLNCSFCMQLPERPV----TTPCG-----HNFCLKCFQKWIGLG-------KKTCAKCRCIIPSK 195 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv----~l~Cg-----H~FC~~Ci~~~~~~~-------~~~CP~Cr~~~~~~ 195 (340)
.+-.|-||+..=++-. +-||. |..+..|+.+|+.++ ...||.|+..+...
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv 84 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV 84 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence 4567999998666432 23665 457889999998732 35899999887654
No 189
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=33.89 E-value=15 Score=25.58 Aligned_cols=15 Identities=40% Similarity=1.322 Sum_probs=12.7
Q ss_pred CCCCcccchhhhhhh
Q 019484 164 PCGHNFCLKCFQKWI 178 (340)
Q Consensus 164 ~CgH~FC~~Ci~~~~ 178 (340)
.|++.||..|...|-
T Consensus 45 ~C~~~fC~~C~~~~H 59 (64)
T smart00647 45 KCGFSFCFRCKVPWH 59 (64)
T ss_pred CCCCeECCCCCCcCC
Confidence 689999999988764
No 190
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=33.67 E-value=26 Score=33.31 Aligned_cols=47 Identities=11% Similarity=-0.157 Sum_probs=36.4
Q ss_pred cCCCcccccccCCCCCCcccCCCCc-ccchhhhhhhccCCCCCCCCCcccC
Q 019484 144 FGGSLNCSFCMQLPERPVTTPCGHN-FCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 144 ~~~~~~C~iC~~~~~~pv~l~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
+...+.|-+|..-+..-+..+|+|. ||..|..- .....||.|.....
T Consensus 340 ~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~---s~~~~~~~c~~~~~ 387 (394)
T KOG2113|consen 340 LMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASA---SASPTSSTCDHNDH 387 (394)
T ss_pred chhhcccccccCceeeeEeecCCcccChhhhhhc---ccCCccccccccce
Confidence 4446789999988887777799998 89999873 23568999987654
No 191
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=33.48 E-value=28 Score=22.74 Aligned_cols=34 Identities=21% Similarity=0.448 Sum_probs=27.9
Q ss_pred CCCcccccccCCCCC--CceeeeCCCCCCcccCCCC
Q 019484 10 NGDGMCMRCKETPVE--EEQLCCKTCATPWHVACLV 43 (340)
Q Consensus 10 ~~~~~c~~c~~~~~~--~~~l~c~~c~~~~h~~cl~ 43 (340)
.....|.+|++.-.. ..-|.|..|....|-.|..
T Consensus 9 ~~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~ 44 (50)
T cd00029 9 FKPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCAD 44 (50)
T ss_pred CCCCChhhcchhhhccccceeEcCCCCCchhhhhhc
Confidence 356779999886544 5779999999999999987
No 192
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=32.84 E-value=28 Score=38.50 Aligned_cols=46 Identities=20% Similarity=0.569 Sum_probs=35.1
Q ss_pred cccccccCCCCC-----Cc--ccCCCCcccchhhhhhhccCCCCCCCCCcccC
Q 019484 148 LNCSFCMQLPER-----PV--TTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 148 ~~C~iC~~~~~~-----pv--~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
..|.||-+.+-. +. .-.|+--.|+.|.+=-.+.++..||.|++.+.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 479999987552 22 23677779999997556677899999999886
No 193
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=32.65 E-value=26 Score=26.40 Aligned_cols=29 Identities=28% Similarity=0.694 Sum_probs=23.4
Q ss_pred cccccccCCCCCCceeeeCC--CCCCcccCCCC
Q 019484 13 GMCMRCKETPVEEEQLCCKT--CATPWHVACLV 43 (340)
Q Consensus 13 ~~c~~c~~~~~~~~~l~c~~--c~~~~h~~cl~ 43 (340)
..|.+|++. ....+-|.. |...||+.|..
T Consensus 37 ~~C~~C~~~--~Ga~i~C~~~~C~~~fH~~CA~ 67 (90)
T PF13771_consen 37 LKCSICKKK--GGACIGCSHPGCSRSFHVPCAR 67 (90)
T ss_pred CCCcCCCCC--CCeEEEEeCCCCCcEEChHHHc
Confidence 468899877 236777876 99999999987
No 194
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=32.63 E-value=36 Score=29.11 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=22.7
Q ss_pred CCcccccccCCCCCCceeeeCCCCCCc
Q 019484 11 GDGMCMRCKETPVEEEQLCCKTCATPW 37 (340)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~c~~~~ 37 (340)
+|..|.||-.-+.-..||+|..-++|.
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgc 27 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGC 27 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCc
Confidence 478899999999999999998855554
No 195
>PLN02400 cellulose synthase
Probab=31.73 E-value=28 Score=38.55 Aligned_cols=47 Identities=17% Similarity=0.434 Sum_probs=35.4
Q ss_pred cccccccCCCCC-----Cc--ccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 148 LNCSFCMQLPER-----PV--TTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 148 ~~C~iC~~~~~~-----pv--~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
..|.||-+.+-. +. .-.|+--.|+.|.+=-.+.++..||.|+..+..
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccc
Confidence 479999987552 22 236777789999975566678899999998864
No 196
>smart00782 PhnA_Zn_Ribbon PhnA Zinc-Ribbon. This protein family includes an uncharacterised member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterised phosphonoacetate hydrolase designated PhnA.
Probab=31.72 E-value=25 Score=23.67 Aligned_cols=10 Identities=20% Similarity=0.654 Sum_probs=7.1
Q ss_pred CcccccccCC
Q 019484 12 DGMCMRCKET 21 (340)
Q Consensus 12 ~~~c~~c~~~ 21 (340)
+..|..|+..
T Consensus 7 ~~kCELC~a~ 16 (47)
T smart00782 7 ESKCELCGSD 16 (47)
T ss_pred CCcccCcCCC
Confidence 4568888864
No 197
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=31.69 E-value=9.9 Score=35.25 Aligned_cols=52 Identities=27% Similarity=0.622 Sum_probs=38.1
Q ss_pred CCccccccc-------CCCCCCceeeeCCCCCCcccCCCCCCCC--CCCCCCCccCCCCCC
Q 019484 11 GDGMCMRCK-------ETPVEEEQLCCKTCATPWHVACLVRPPE--SLASTLLWECPDCTG 62 (340)
Q Consensus 11 ~~~~c~~c~-------~~~~~~~~l~c~~c~~~~h~~cl~~p~~--~~~p~~~w~c~~c~~ 62 (340)
....|-.|- ++.-+++++.|..|.+.=|-.||---+. ..|-.-.|+|-.|..
T Consensus 223 Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~ 283 (336)
T KOG1244|consen 223 PNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKY 283 (336)
T ss_pred CCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecce
Confidence 455677884 3456889999999999999999962222 233455899999964
No 198
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=31.07 E-value=23 Score=25.27 Aligned_cols=32 Identities=25% Similarity=0.490 Sum_probs=16.6
Q ss_pred CcccccccCCCCCCc----ccCCCCcccchhhhhhh
Q 019484 147 SLNCSFCMQLPERPV----TTPCGHNFCLKCFQKWI 178 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv----~l~CgH~FC~~Ci~~~~ 178 (340)
...|.+|...|..-. .-.||+.||..|.....
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 457999999885321 14799999999987554
No 200
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=30.80 E-value=7.5 Score=42.74 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=35.6
Q ss_pred ccccccCCCCCCceeeeCC-CCCCccc-CCCCCCCC-CCCCCCCccCCCCC
Q 019484 14 MCMRCKETPVEEEQLCCKT-CATPWHV-ACLVRPPE-SLASTLLWECPDCT 61 (340)
Q Consensus 14 ~c~~c~~~~~~~~~l~c~~-c~~~~h~-~cl~~p~~-~~~p~~~w~c~~c~ 61 (340)
.|.+|+.. +.+|.|++ |+..||+ .||++--+ ..++++-|+|++|.
T Consensus 430 rl~Ie~~d---et~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~ 477 (1414)
T KOG1473|consen 430 RLRIEGMD---ETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEI 477 (1414)
T ss_pred eeEEecCC---CcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHH
Confidence 47888743 57899998 9999999 99983322 35789999999994
No 201
>PF15616 TerY-C: TerY-C metal binding domain
Probab=30.59 E-value=32 Score=28.52 Aligned_cols=46 Identities=28% Similarity=0.527 Sum_probs=34.5
Q ss_pred hhcCCCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 142 DIFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 142 ~~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
+.|...-.||-|-..+--.+. .||+.||.. .....+||-|.+....
T Consensus 72 seL~g~PgCP~CGn~~~fa~C-~CGkl~Ci~------g~~~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 72 SELIGAPGCPHCGNQYAFAVC-GCGKLFCID------GEGEVTCPWCGNEGSF 117 (131)
T ss_pred HHhcCCCCCCCCcChhcEEEe-cCCCEEEeC------CCCCEECCCCCCeeee
Confidence 455566889999998776655 899999853 2336799999887654
No 202
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=30.08 E-value=26 Score=33.36 Aligned_cols=44 Identities=20% Similarity=0.491 Sum_probs=31.6
Q ss_pred CcccccccCCCCCCcccC----CC--CcccchhhhhhhccCCCCCCCCCcc
Q 019484 147 SLNCSFCMQLPERPVTTP----CG--HNFCLKCFQKWIGLGKKTCAKCRCI 191 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l~----Cg--H~FC~~Ci~~~~~~~~~~CP~Cr~~ 191 (340)
.-.||||-....-.++.. =| +.+|..|-..|... ...||.|...
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~-R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV-RVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc-CccCCCCCCC
Confidence 458999998775443322 34 45799999998765 5689999763
No 203
>PF08092 Toxin_22: Magi peptide toxin family ; InterPro: IPR012627 This family consists of Magi peptide toxins (Magi 1, 2 and 5) isolated from the venom of Hexathelidae spider. These insecticidal peptide toxins bind to sodium channels and induce flaccid paralysis when injected into lepidopteran larvae. However, these peptides are not toxic to mice when injected intracranially at 20 pmol/g.; GO: 0019871 sodium channel inhibitor activity, 0005576 extracellular region
Probab=30.05 E-value=30 Score=22.07 Aligned_cols=12 Identities=17% Similarity=0.290 Sum_probs=8.5
Q ss_pred CCCcCCCCCCcc
Q 019484 3 HVIQLPCNGDGM 14 (340)
Q Consensus 3 ~~~~~~~~~~~~ 14 (340)
.++++|||.+..
T Consensus 2 ~G~~vpCde~~p 13 (38)
T PF08092_consen 2 IGEDVPCDENLP 13 (38)
T ss_pred cccccccCCCCC
Confidence 367899986554
No 204
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=28.44 E-value=35 Score=33.07 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=30.9
Q ss_pred ceeeeCCCCCCcccCC--CCCCCCCCCC-CCCccCCCCCCCC
Q 019484 26 EQLCCKTCATPWHVAC--LVRPPESLAS-TLLWECPDCTGDA 64 (340)
Q Consensus 26 ~~l~c~~c~~~~h~~c--l~~p~~~~~p-~~~w~c~~c~~~~ 64 (340)
.+.-||.|...||.-| .. .+-..+| ...|+|.+|....
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~-~~~~e~p~~~~~~c~~c~~~~ 114 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVG-TAEKEAPKEDPKVCDECKEAQ 114 (345)
T ss_pred hhhccccccccccccccccC-chhhcCCccccccccccchhh
Confidence 6799999999999999 99 6666655 5589999995433
No 205
>PRK11827 hypothetical protein; Provisional
Probab=28.26 E-value=44 Score=23.76 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=18.4
Q ss_pred cccccccCCC---CCCceeeeCCCCCCccc
Q 019484 13 GMCMRCKETP---VEEEQLCCKTCATPWHV 39 (340)
Q Consensus 13 ~~c~~c~~~~---~~~~~l~c~~c~~~~h~ 39 (340)
.+|.+|+..- ...+.|.|..|...|=+
T Consensus 9 LaCP~ckg~L~~~~~~~~Lic~~~~laYPI 38 (60)
T PRK11827 9 IACPVCNGKLWYNQEKQELICKLDNLAFPL 38 (60)
T ss_pred eECCCCCCcCeEcCCCCeEECCccCeeccc
Confidence 4688888643 23456888888887744
No 206
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=28.06 E-value=13 Score=35.00 Aligned_cols=46 Identities=22% Similarity=0.379 Sum_probs=22.4
Q ss_pred CcccccccCCCCCCcccCC---C--CcccchhhhhhhccCCCCCCCCCcccC
Q 019484 147 SLNCSFCMQLPERPVTTPC---G--HNFCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l~C---g--H~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
.-.||||-....-.+...= | |.+|..|-..|... ...||.|...-.
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~-R~~Cp~Cg~~~~ 222 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV-RIKCPYCGNTDH 222 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE---TTS-TTT---SS
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec-CCCCcCCCCCCC
Confidence 4689999987665544432 3 55799999999765 468999976543
No 207
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=27.80 E-value=51 Score=20.14 Aligned_cols=12 Identities=33% Similarity=0.966 Sum_probs=8.9
Q ss_pred CCccCCCCCCCC
Q 019484 53 LLWECPDCTGDA 64 (340)
Q Consensus 53 ~~w~c~~c~~~~ 64 (340)
..|.||.|..+.
T Consensus 16 ~~~~CP~Cg~~~ 27 (33)
T cd00350 16 APWVCPVCGAPK 27 (33)
T ss_pred CCCcCcCCCCcH
Confidence 349999997643
No 208
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=27.20 E-value=26 Score=24.21 Aligned_cols=30 Identities=40% Similarity=0.966 Sum_probs=16.6
Q ss_pred ccccc--ccCCCCCC-------cc-cCCCCcccchhhhhh
Q 019484 148 LNCSF--CMQLPERP-------VT-TPCGHNFCLKCFQKW 177 (340)
Q Consensus 148 ~~C~i--C~~~~~~p-------v~-l~CgH~FC~~Ci~~~ 177 (340)
..||- |...+... +. ..|++.||..|...|
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 47876 87766621 22 239999999998776
No 209
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=27.20 E-value=21 Score=35.01 Aligned_cols=44 Identities=27% Similarity=0.542 Sum_probs=0.0
Q ss_pred CcccccccCCCCCC--------------cccCCCCcccchhhhhhhc-----cCCCCCCCCCcccC
Q 019484 147 SLNCSFCMQLPERP--------------VTTPCGHNFCLKCFQKWIG-----LGKKTCAKCRCIIP 193 (340)
Q Consensus 147 ~~~C~iC~~~~~~p--------------v~l~CgH~FC~~Ci~~~~~-----~~~~~CP~Cr~~~~ 193 (340)
...|||=+..+..| |.+.|||.+-+. .|.. .....||+|+..-+
T Consensus 277 rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 277 RPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGP 339 (416)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccccccccccCCCccccCC
Confidence 36788877666533 447899987654 3422 12579999987544
No 210
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=27.11 E-value=56 Score=31.27 Aligned_cols=47 Identities=23% Similarity=0.569 Sum_probs=35.0
Q ss_pred CcccccccCCCC--CCccc--CCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 147 SLNCSFCMQLPE--RPVTT--PCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 147 ~~~C~iC~~~~~--~pv~l--~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
.-.|++|-+.+. +-..+ +|++..|..|+...... ...||.||+++..
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~-~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDG-DGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhccccc-CCCCCccCCcccc
Confidence 367999999773 22223 68888899998877654 7899999977664
No 211
>PRK11595 DNA utilization protein GntX; Provisional
Probab=26.94 E-value=28 Score=31.37 Aligned_cols=27 Identities=19% Similarity=0.514 Sum_probs=18.8
Q ss_pred cccccccCCCCCCceeeeCCCCCCccc
Q 019484 13 GMCMRCKETPVEEEQLCCKTCATPWHV 39 (340)
Q Consensus 13 ~~c~~c~~~~~~~~~l~c~~c~~~~h~ 39 (340)
..|.+|+.........+|+.|...++.
T Consensus 6 ~~C~~C~~~~~~~~~~lC~~C~~~l~~ 32 (227)
T PRK11595 6 GLCWLCRMPLALSHWGICSVCSRALRT 32 (227)
T ss_pred CcCccCCCccCCCCCcccHHHHhhCCc
Confidence 469999876443344689999777654
No 212
>PLN02195 cellulose synthase A
Probab=26.88 E-value=47 Score=36.51 Aligned_cols=46 Identities=22% Similarity=0.492 Sum_probs=35.0
Q ss_pred cccccccCCCC-----CCc--ccCCCCcccchhhhhhhccCCCCCCCCCcccC
Q 019484 148 LNCSFCMQLPE-----RPV--TTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 148 ~~C~iC~~~~~-----~pv--~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
..|.||-+.+- +|. .-.|+--.|+.|.+=-.+.++..||.|+..+.
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 36999988554 232 23688889999997556677889999999887
No 213
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=26.77 E-value=23 Score=21.53 Aligned_cols=24 Identities=29% Similarity=0.765 Sum_probs=11.4
Q ss_pred ccccccCCC--CCCceeeeCCCCCCc
Q 019484 14 MCMRCKETP--VEEEQLCCKTCATPW 37 (340)
Q Consensus 14 ~c~~c~~~~--~~~~~l~c~~c~~~~ 37 (340)
.|..|+... .+..+|.|..|..-|
T Consensus 4 ~Cp~C~se~~y~D~~~~vCp~C~~ew 29 (30)
T PF08274_consen 4 KCPLCGSEYTYEDGELLVCPECGHEW 29 (30)
T ss_dssp --TTT-----EE-SSSEEETTTTEEE
T ss_pred CCCCCCCcceeccCCEEeCCcccccC
Confidence 567777632 355678888876543
No 214
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=26.17 E-value=27 Score=22.60 Aligned_cols=34 Identities=21% Similarity=0.477 Sum_probs=27.3
Q ss_pred CCCcccccccCCCCCC-ceeeeCCCCCCcccCCCC
Q 019484 10 NGDGMCMRCKETPVEE-EQLCCKTCATPWHVACLV 43 (340)
Q Consensus 10 ~~~~~c~~c~~~~~~~-~~l~c~~c~~~~h~~cl~ 43 (340)
.....|.+|++.-... +.+.|..|....|-.|+.
T Consensus 9 ~~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~ 43 (49)
T smart00109 9 KKPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAE 43 (49)
T ss_pred CCCCCccccccccCcCCCCcCCCCCCchHHHHHHh
Confidence 4567799998865432 479999999999999988
No 215
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=25.98 E-value=68 Score=19.28 Aligned_cols=28 Identities=21% Similarity=0.463 Sum_probs=18.3
Q ss_pred ccccccCCCCCC-ceeeeCCCCCCcccCCCC
Q 019484 14 MCMRCKETPVEE-EQLCCKTCATPWHVACLV 43 (340)
Q Consensus 14 ~c~~c~~~~~~~-~~l~c~~c~~~~h~~cl~ 43 (340)
.|..|+..-.+. ..+.-. +..||..|+.
T Consensus 1 ~C~~C~~~i~~~~~~~~~~--~~~~H~~Cf~ 29 (39)
T smart00132 1 KCAGCGKPIRGGELVLRAL--GKVWHPECFK 29 (39)
T ss_pred CccccCCcccCCcEEEEeC--CccccccCCC
Confidence 367787765554 334433 6789998887
No 216
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.67 E-value=31 Score=31.20 Aligned_cols=69 Identities=19% Similarity=0.413 Sum_probs=40.6
Q ss_pred CcccccccCCCCCCce--eeeCCCCCCcccCCCCC----CCCCCCCCCCccCCCCCCCCcccccccccCCCCCchhhHHH
Q 019484 12 DGMCMRCKETPVEEEQ--LCCKTCATPWHVACLVR----PPESLASTLLWECPDCTGDAAVAEDAGQAAGGAGGIVAEIM 85 (340)
Q Consensus 12 ~~~c~~c~~~~~~~~~--l~c~~c~~~~h~~cl~~----p~~~~~p~~~w~c~~c~~~~~~~p~~~~~~~~~~~lva~i~ 85 (340)
+-.|.+|+..-.+.+. |.| -.-||-.||+- =|-.+.|.| .+||-|..+-. |+...++.-.+.|.+.+.
T Consensus 50 ~pNC~LC~t~La~gdt~RLvC---yhlfHW~ClneraA~lPanTAPaG-yqCP~Cs~eiF--Pp~NlvsPva~aLre~L~ 123 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLVC---YHLFHWKCLNERAANLPANTAPAG-YQCPCCSQEIF--PPINLVSPVAEALREQLK 123 (299)
T ss_pred CCCCceeCCccccCcceeehh---hhhHHHHHhhHHHhhCCCcCCCCc-ccCCCCCCccC--CCccccchhHHHHHHHHH
Confidence 4569999885443333 554 58899999971 233445544 79999998776 333333333333444433
Q ss_pred H
Q 019484 86 A 86 (340)
Q Consensus 86 ~ 86 (340)
+
T Consensus 124 q 124 (299)
T KOG3970|consen 124 Q 124 (299)
T ss_pred h
Confidence 3
No 217
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=25.27 E-value=18 Score=37.46 Aligned_cols=41 Identities=27% Similarity=0.698 Sum_probs=28.8
Q ss_pred cccccccCCC-----CCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCC
Q 019484 13 GMCMRCKETP-----VEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCT 61 (340)
Q Consensus 13 ~~c~~c~~~~-----~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~ 61 (340)
-+|.+|+.+. ..+..--|+.|..-||--||. +..+- ||.|.
T Consensus 512 fiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~----r~s~~----CPrC~ 557 (580)
T KOG1829|consen 512 FICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLR----RKSPC----CPRCE 557 (580)
T ss_pred eeeeeccCCCcccccccccceeHHHHHHHHHHHHHh----ccCCC----CCchH
Confidence 3588885543 134446799999999999999 22222 99996
No 218
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=25.13 E-value=48 Score=36.67 Aligned_cols=48 Identities=21% Similarity=0.578 Sum_probs=35.9
Q ss_pred CcccccccCCCC-----CCc--ccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 147 SLNCSFCMQLPE-----RPV--TTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 147 ~~~C~iC~~~~~-----~pv--~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
...|.||-+..- +|. .-.|+--.|..|.+--.+.++..||.|+..+..
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 457999998755 222 236777799999976566778899999998863
No 219
>PHA02929 N1R/p28-like protein; Provisional
Probab=24.90 E-value=27 Score=31.96 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=32.2
Q ss_pred CCcccccccCCCCCCc-----eeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 11 GDGMCMRCKETPVEEE-----QLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 11 ~~~~c~~c~~~~~~~~-----~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
.+..|.+|...-.+.. ...=..|.+.||..||. .=+..- =.||-|..+-.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~-~Wl~~~----~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECID-IWKKEK----NTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHH-HHHhcC----CCCCCCCCEee
Confidence 4678999988533221 11123578999999998 544332 26999986543
No 220
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=24.72 E-value=32 Score=19.85 Aligned_cols=9 Identities=33% Similarity=0.896 Sum_probs=4.5
Q ss_pred CCCCCCCCc
Q 019484 182 KKTCAKCRC 190 (340)
Q Consensus 182 ~~~CP~Cr~ 190 (340)
...||.|.+
T Consensus 16 ~~fC~~CG~ 24 (26)
T PF13248_consen 16 AKFCPNCGA 24 (26)
T ss_pred cccChhhCC
Confidence 345555544
No 221
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=24.39 E-value=36 Score=22.90 Aligned_cols=11 Identities=36% Similarity=0.930 Sum_probs=6.9
Q ss_pred CCccCCCCCCC
Q 019484 53 LLWECPDCTGD 63 (340)
Q Consensus 53 ~~w~c~~c~~~ 63 (340)
.+|.||.|.+.
T Consensus 33 ~~w~CP~C~a~ 43 (47)
T PF00301_consen 33 DDWVCPVCGAP 43 (47)
T ss_dssp TT-B-TTTSSB
T ss_pred CCCcCcCCCCc
Confidence 36999999864
No 222
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=24.18 E-value=39 Score=31.21 Aligned_cols=43 Identities=16% Similarity=0.175 Sum_probs=34.2
Q ss_pred CcccccccCCCCCCccc-CCCCcccchhhhhhhcc-CCCCCCCCC
Q 019484 147 SLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGL-GKKTCAKCR 189 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l-~CgH~FC~~Ci~~~~~~-~~~~CP~Cr 189 (340)
+++||+=...+..|+.- .|||.|=+.-|...+.. ....||+=.
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~g 220 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLG 220 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeeccccc
Confidence 58999998999999775 89999999988887653 245788743
No 223
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=23.97 E-value=38 Score=32.30 Aligned_cols=44 Identities=23% Similarity=0.566 Sum_probs=31.8
Q ss_pred CCcccccccCCCCCCcc-c--CCC--CcccchhhhhhhccCCCCCCCCCc
Q 019484 146 GSLNCSFCMQLPERPVT-T--PCG--HNFCLKCFQKWIGLGKKTCAKCRC 190 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv~-l--~Cg--H~FC~~Ci~~~~~~~~~~CP~Cr~ 190 (340)
..-.||||-....-.+. + .=| +.+|..|-..|... ...||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~-R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV-RVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc-CccCCCCCC
Confidence 45789999987654433 1 234 44799999998765 568999975
No 224
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.21 E-value=34 Score=29.11 Aligned_cols=24 Identities=38% Similarity=0.768 Sum_probs=18.2
Q ss_pred CcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 167 HNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 167 H~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
+.||.+|-.+.+. .||.|..++..
T Consensus 28 ~~fC~kCG~~tI~----~Cp~C~~~IrG 51 (158)
T PF10083_consen 28 EKFCSKCGAKTIT----SCPNCSTPIRG 51 (158)
T ss_pred HHHHHHhhHHHHH----HCcCCCCCCCC
Confidence 5699999887654 48999887754
No 225
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=23.16 E-value=69 Score=21.99 Aligned_cols=25 Identities=24% Similarity=0.676 Sum_probs=12.7
Q ss_pred CCCCcccchhhhhhhccCCCCCCCCC
Q 019484 164 PCGHNFCLKCFQKWIGLGKKTCAKCR 189 (340)
Q Consensus 164 ~CgH~FC~~Ci~~~~~~~~~~CP~Cr 189 (340)
.|++.||..|=.=. ...--.||-|.
T Consensus 26 ~C~~~FC~dCD~fi-HE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCDVFI-HETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHHHTT-TTTS-SSSTT-
T ss_pred CCCCccccCcChhh-hccccCCcCCC
Confidence 68899999994322 22245799884
No 226
>PF14353 CpXC: CpXC protein
Probab=22.63 E-value=44 Score=27.11 Aligned_cols=47 Identities=19% Similarity=0.149 Sum_probs=22.2
Q ss_pred cccccccCCCCCCcccCCCCcccchhhhhhhcc--CCCCCCCCCcccCC
Q 019484 148 LNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGL--GKKTCAKCRCIIPS 194 (340)
Q Consensus 148 ~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~--~~~~CP~Cr~~~~~ 194 (340)
++||.|...+...+-+.-.-..=..=..+.+.. ...+||.|...+..
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 568877776664433221111111111112211 14699999887653
No 227
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=22.11 E-value=37 Score=30.41 Aligned_cols=46 Identities=20% Similarity=0.561 Sum_probs=35.9
Q ss_pred CcccccccCCCCCCccc-CCCCcccchhhhhhhccCCCCCCCCCcccC
Q 019484 147 SLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
-..|.+|..+...-+.- .|+-.+...|+.+++.. ...||.|..-.+
T Consensus 181 lk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~ 227 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWT 227 (235)
T ss_pred HHHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccC
Confidence 45899999988765543 67777889999999887 678999965444
No 228
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=21.96 E-value=63 Score=20.69 Aligned_cols=23 Identities=30% Similarity=0.746 Sum_probs=12.8
Q ss_pred cccccCCCCC-CcccC-CCCcccch
Q 019484 150 CSFCMQLPER-PVTTP-CGHNFCLK 172 (340)
Q Consensus 150 C~iC~~~~~~-pv~l~-CgH~FC~~ 172 (340)
|.+|...... |..=. |+.+||..
T Consensus 1 C~~C~~~~~l~~f~C~~C~~~FC~~ 25 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCGNLFCGE 25 (39)
T ss_pred CcccCCcccccCeECCccCCccccc
Confidence 4556554444 54433 77777753
No 229
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.87 E-value=27 Score=32.48 Aligned_cols=50 Identities=18% Similarity=0.351 Sum_probs=30.1
Q ss_pred CCcccccccCCCCCCc-------eeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCC
Q 019484 11 GDGMCMRCKETPVEEE-------QLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGD 63 (340)
Q Consensus 11 ~~~~c~~c~~~~~~~~-------~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~ 63 (340)
+|.+|.||+..-+.+. -+-==.|++.||-+|.+ = .-+=-..=.||-|.-.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIr-G--WcivGKkqtCPYCKek 279 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIR-G--WCIVGKKQTCPYCKEK 279 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhh-h--heeecCCCCCchHHHH
Confidence 5899999998654443 11112467999999988 2 0010112368888543
No 230
>cd00607 RNase_Sa RNase_Sa. Ribonucleases first isolated from Streptomyces aureofaciens. In general, ribonucleases cleave phosphodiester bonds in RNA and are essential for both non-specific RNA degradation and for numerous forms of RNA processing. RNAse Sa is a guanylate specific endoribonuclease which belongs to the superfamily of microbial ribonucleases. Typical of this sub-family, the enzyme hydrolyses the phosphodiester bonds of RNA at the 3' oxygen end of guanosine residues to yield oligonucleotides with the guanosine-2',3'-cyclophosphate at the 3' end and the hydroxyl group at the 5' end. The terminal guanosine-2,3'-cyclophosphate is hydrolysed by guanyl RNAses to give guanosine-3'-phosphate.
Probab=21.67 E-value=2.7e+02 Score=21.76 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=16.6
Q ss_pred CCCCCCcEEEEecCccccCCCCCceEEEec
Q 019484 310 GQSKCGAQSVVLSGGYEDDEDHGEWFLYTG 339 (340)
Q Consensus 310 ~~~~~ga~si~~sg~y~~d~d~g~~~~ytg 339 (340)
|....||..||.+|.-. +-+.+.||+
T Consensus 60 g~~~RGarRIV~g~~~~----~~g~~YYT~ 85 (95)
T cd00607 60 GSRDRGARRIVCGGPPR----DTGECYYTD 85 (95)
T ss_pred CCCCCCCCeEEECCCCC----cCCCEEEcC
Confidence 55678999999876421 233456664
No 231
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=21.41 E-value=28 Score=21.10 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=12.8
Q ss_pred Ccccchhhhhhhcc---CCCCCCCCCcc
Q 019484 167 HNFCLKCFQKWIGL---GKKTCAKCRCI 191 (340)
Q Consensus 167 H~FC~~Ci~~~~~~---~~~~CP~Cr~~ 191 (340)
|.||..|-.+.... ....||.|...
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGHE 30 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-E
T ss_pred CcccCcCCccccCCCCcCEeECCCCcCE
Confidence 77888887764331 23578888653
No 232
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=21.28 E-value=46 Score=26.33 Aligned_cols=31 Identities=26% Similarity=0.622 Sum_probs=23.7
Q ss_pred cccccccCCC--CCCceeeeCCCCCCcccCCCC
Q 019484 13 GMCMRCKETP--VEEEQLCCKTCATPWHVACLV 43 (340)
Q Consensus 13 ~~c~~c~~~~--~~~~~l~c~~c~~~~h~~cl~ 43 (340)
..|++|+... -..+.|.|-.|+..|++.=+-
T Consensus 36 daCeiC~~~GY~q~g~~lvC~~C~~~~~~~~ig 68 (102)
T PF10080_consen 36 DACEICGPKGYYQEGDQLVCKNCGVRFNLPTIG 68 (102)
T ss_pred EeccccCCCceEEECCEEEEecCCCEEehhhcc
Confidence 4699996643 345679999999999987555
No 233
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.77 E-value=92 Score=25.10 Aligned_cols=40 Identities=23% Similarity=0.439 Sum_probs=27.0
Q ss_pred ccccccCCCCCCc--------------ccCCCCcccchhhhhhhccCCCCCCCCC
Q 019484 149 NCSFCMQLPERPV--------------TTPCGHNFCLKCFQKWIGLGKKTCAKCR 189 (340)
Q Consensus 149 ~C~iC~~~~~~pv--------------~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr 189 (340)
.|--|+..|..+. ...|.+.||..|=.-+-.. -..||-|.
T Consensus 57 ~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~-Lh~CPGC~ 110 (112)
T TIGR00622 57 FCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHES-LHCCPGCI 110 (112)
T ss_pred cccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhh-ccCCcCCC
Confidence 4888888776431 3478999999995433332 44799885
No 234
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=20.76 E-value=67 Score=33.93 Aligned_cols=37 Identities=27% Similarity=0.626 Sum_probs=0.0
Q ss_pred cccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccC
Q 019484 148 LNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 148 ~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
..||-|...... ++.||..|-.+...+ .||.|.+.+.
T Consensus 2 ~~Cp~Cg~~n~~------~akFC~~CG~~l~~~---~Cp~CG~~~~ 38 (645)
T PRK14559 2 LICPQCQFENPN------NNRFCQKCGTSLTHK---PCPQCGTEVP 38 (645)
T ss_pred CcCCCCCCcCCC------CCccccccCCCCCCC---cCCCCCCCCC
No 235
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=20.74 E-value=57 Score=21.55 Aligned_cols=23 Identities=26% Similarity=0.574 Sum_probs=13.1
Q ss_pred cccccCCCCCCcccCCCCcccch
Q 019484 150 CSFCMQLPERPVTTPCGHNFCLK 172 (340)
Q Consensus 150 C~iC~~~~~~pv~l~CgH~FC~~ 172 (340)
|..|...-..-+.|.|+|.+|..
T Consensus 2 C~~C~~~~~l~~CL~C~~~~c~~ 24 (50)
T smart00290 2 CSVCGTIENLWLCLTCGQVGCGR 24 (50)
T ss_pred cccCCCcCCeEEecCCCCcccCC
Confidence 55666444333456677777743
No 236
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.52 E-value=39 Score=32.16 Aligned_cols=50 Identities=22% Similarity=0.358 Sum_probs=31.9
Q ss_pred CCcccccccCC--CCCCc-eeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 11 GDGMCMRCKET--PVEEE-QLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 11 ~~~~c~~c~~~--~~~~~-~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
++..|.+|+.. .++.. +|.= .|.+.|.-.|++ --+. .|.=.||.|...-.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~-~l~~---~~~~~CP~C~~~lr 54 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVD-LLFV---RGSGSCPECDTPLR 54 (309)
T ss_pred CCCCCCcCCCCCccCcccccccC-CCCCcccHHHHH-HHhc---CCCCCCCCCCCccc
Confidence 35789999993 33333 3333 788888888888 3322 33348999965443
Done!