Query 019484
Match_columns 340
No_of_seqs 486 out of 2204
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 16:48:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019484.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019484hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oln_A E3 ubiquitin-protein li 99.9 1.4E-28 4.7E-33 216.6 6.3 89 243-340 3-93 (231)
2 3fde_A E3 ubiquitin-protein li 99.9 4.6E-25 1.6E-29 192.7 5.3 69 263-340 2-70 (212)
3 2pb7_A E3 ubiquitin-protein li 99.9 1.1E-24 3.9E-29 192.9 6.3 72 260-340 6-77 (239)
4 3q0b_X Histone-lysine N-methyl 99.9 3.5E-23 1.2E-27 176.5 4.6 66 266-340 1-70 (167)
5 2e6s_A E3 ubiquitin-protein li 99.6 2.1E-16 7.2E-21 117.9 5.8 57 5-63 20-77 (77)
6 1fp0_A KAP-1 corepressor; PHD 99.6 4.8E-16 1.6E-20 118.1 7.2 59 3-65 16-74 (88)
7 1f62_A Transcription factor WS 99.6 1.7E-16 5.8E-21 109.4 2.8 48 14-62 2-49 (51)
8 2lri_C Autoimmune regulator; Z 99.6 2.9E-16 9.9E-21 113.6 4.0 53 11-67 11-63 (66)
9 2e6r_A Jumonji/ARID domain-con 99.6 2E-16 6.9E-21 122.2 3.0 58 4-62 8-65 (92)
10 3shb_A E3 ubiquitin-protein li 99.6 5.1E-16 1.8E-20 115.6 4.7 57 5-63 20-77 (77)
11 3asl_A E3 ubiquitin-protein li 99.6 5E-16 1.7E-20 113.9 4.5 57 5-63 12-69 (70)
12 1mm2_A MI2-beta; PHD, zinc fin 99.6 1.9E-15 6.4E-20 107.9 5.2 51 11-65 8-58 (61)
13 1t1h_A Gspef-atpub14, armadill 99.6 1.6E-15 5.4E-20 113.5 4.0 72 144-218 5-76 (78)
14 2l5u_A Chromodomain-helicase-D 99.5 1.9E-15 6.5E-20 107.9 2.9 55 5-63 4-58 (61)
15 3ztg_A E3 ubiquitin-protein li 99.5 5.5E-15 1.9E-19 114.1 5.6 74 143-218 9-84 (92)
16 1wgm_A Ubiquitin conjugation f 99.5 1.8E-14 6.3E-19 112.8 7.6 74 141-218 16-90 (98)
17 1xwh_A Autoimmune regulator; P 99.5 4.5E-15 1.5E-19 107.7 3.2 51 10-64 6-56 (66)
18 2yql_A PHD finger protein 21A; 99.5 5.8E-15 2E-19 103.6 3.2 49 10-62 7-55 (56)
19 2kr4_A Ubiquitin conjugation f 99.5 1.1E-14 3.9E-19 111.0 4.7 72 142-217 9-80 (85)
20 1wev_A Riken cDNA 1110020M19; 99.5 4.5E-15 1.6E-19 113.7 1.9 55 7-62 11-71 (88)
21 3fl2_A E3 ubiquitin-protein li 99.5 1.7E-14 5.9E-19 117.6 4.8 76 138-215 43-118 (124)
22 2kre_A Ubiquitin conjugation f 99.5 3.3E-14 1.1E-18 111.7 6.2 74 141-218 23-96 (100)
23 3ask_A E3 ubiquitin-protein li 99.5 2.1E-14 7E-19 127.4 5.2 56 6-63 169-225 (226)
24 2puy_A PHD finger protein 21A; 99.5 1E-14 3.5E-19 103.8 2.4 48 11-62 4-51 (60)
25 2kwj_A Zinc finger protein DPF 99.5 2.1E-14 7.3E-19 115.5 3.5 57 5-62 51-107 (114)
26 3lrq_A E3 ubiquitin-protein li 99.5 1.4E-14 5E-19 113.7 2.4 78 138-218 13-91 (100)
27 2yt5_A Metal-response element- 99.5 1.3E-14 4.4E-19 105.4 1.8 54 11-65 5-63 (66)
28 2y43_A E3 ubiquitin-protein li 99.4 3.2E-14 1.1E-18 111.4 3.8 76 139-218 14-90 (99)
29 1jm7_B BARD1, BRCA1-associated 99.4 9.1E-14 3.1E-18 112.2 6.3 76 137-218 12-88 (117)
30 1z6u_A NP95-like ring finger p 99.4 1E-13 3.5E-18 116.9 4.9 75 139-215 70-144 (150)
31 3v43_A Histone acetyltransfera 99.4 1.4E-13 4.6E-18 110.4 5.3 58 4-62 53-111 (112)
32 2ku3_A Bromodomain-containing 99.4 2.8E-14 9.5E-19 104.7 1.0 52 9-63 13-66 (71)
33 2egp_A Tripartite motif-contai 99.4 9E-15 3.1E-19 109.4 -2.1 63 141-206 6-74 (79)
34 2ysm_A Myeloid/lymphoid or mix 99.4 1.6E-13 5.5E-18 109.9 3.8 59 5-64 47-105 (111)
35 2yu4_A E3 SUMO-protein ligase 99.4 2.9E-13 1E-17 105.1 4.4 72 144-218 4-84 (94)
36 2l43_A N-teminal domain from h 99.4 9.7E-14 3.3E-18 106.2 1.4 55 7-64 20-76 (88)
37 2csy_A Zinc finger protein 183 99.4 3.9E-13 1.3E-17 101.2 4.6 64 144-215 12-75 (81)
38 3l11_A E3 ubiquitin-protein li 99.4 1.1E-13 3.8E-18 111.3 1.6 71 144-214 12-86 (115)
39 2ecw_A Tripartite motif-contai 99.4 5.8E-14 2E-18 106.2 -0.1 63 141-206 13-80 (85)
40 2ecy_A TNF receptor-associated 99.4 4.1E-13 1.4E-17 97.1 4.3 54 141-194 9-62 (66)
41 2ckl_A Polycomb group ring fin 99.4 3.6E-13 1.2E-17 107.1 4.1 75 140-215 8-84 (108)
42 2ecv_A Tripartite motif-contai 99.3 9.8E-14 3.4E-18 104.9 0.6 63 141-206 13-80 (85)
43 4ayc_A E3 ubiquitin-protein li 99.3 2.9E-13 9.8E-18 112.5 3.4 67 142-214 48-114 (138)
44 1jm7_A BRCA1, breast cancer ty 99.3 2.1E-13 7.3E-18 108.8 1.9 73 139-214 13-87 (112)
45 2djb_A Polycomb group ring fin 99.3 6.4E-13 2.2E-17 97.8 4.0 54 141-195 9-63 (72)
46 2ysl_A Tripartite motif-contai 99.3 1E-12 3.6E-17 96.6 4.6 55 140-194 13-69 (73)
47 3o36_A Transcription intermedi 99.3 9.2E-13 3.1E-17 114.8 4.9 51 11-65 3-53 (184)
48 3u5n_A E3 ubiquitin-protein li 99.3 8.2E-13 2.8E-17 117.2 4.4 51 11-65 6-56 (207)
49 2ckl_B Ubiquitin ligase protei 99.3 4.6E-13 1.6E-17 114.5 2.5 75 142-218 49-124 (165)
50 2ro1_A Transcription intermedi 99.3 1.1E-12 3.7E-17 114.7 4.9 51 11-65 1-51 (189)
51 2yur_A Retinoblastoma-binding 99.3 9.2E-13 3.1E-17 97.5 3.6 53 142-194 10-64 (74)
52 2c2l_A CHIP, carboxy terminus 99.3 1.3E-12 4.4E-17 120.2 5.2 72 144-218 205-276 (281)
53 2f42_A STIP1 homology and U-bo 99.3 1.7E-12 5.7E-17 112.0 4.8 73 143-218 102-174 (179)
54 2ct2_A Tripartite motif protei 99.3 5.2E-13 1.8E-17 101.8 1.3 62 142-203 10-77 (88)
55 2ysj_A Tripartite motif-contai 99.3 1.4E-12 4.7E-17 93.3 3.4 50 139-188 12-63 (63)
56 3hct_A TNF receptor-associated 99.3 8.4E-13 2.9E-17 106.7 1.9 72 140-214 11-82 (118)
57 2ecj_A Tripartite motif-contai 99.3 3.3E-12 1.1E-16 89.5 4.4 48 141-188 9-58 (58)
58 2ysm_A Myeloid/lymphoid or mix 99.2 5.5E-12 1.9E-16 100.9 5.2 50 11-61 6-55 (111)
59 2d8t_A Dactylidin, ring finger 99.2 1.8E-12 6.2E-17 95.0 1.7 48 146-194 14-61 (71)
60 1rmd_A RAG1; V(D)J recombinati 99.2 2.7E-12 9.2E-17 103.2 2.2 71 141-213 17-87 (116)
61 2k16_A Transcription initiatio 99.2 4.6E-12 1.6E-16 94.1 1.6 50 12-62 18-67 (75)
62 1g25_A CDK-activating kinase a 99.2 7.1E-12 2.4E-16 90.2 2.5 50 146-195 2-56 (65)
63 2ea6_A Ring finger protein 4; 99.2 4.6E-12 1.6E-16 91.8 1.4 51 143-194 11-68 (69)
64 1e4u_A Transcriptional repress 99.2 3E-11 1E-15 90.3 5.4 53 143-195 7-63 (78)
65 3knv_A TNF receptor-associated 99.2 4.2E-12 1.5E-16 105.8 0.7 75 139-213 23-103 (141)
66 3ng2_A RNF4, snurf, ring finge 99.1 1.2E-11 4.2E-16 90.2 2.3 50 145-195 8-64 (71)
67 3hcs_A TNF receptor-associated 99.1 1.1E-11 3.6E-16 106.5 1.9 73 139-214 10-82 (170)
68 1bor_A Transcription factor PM 99.1 2.9E-11 9.8E-16 84.5 3.6 45 146-194 5-49 (56)
69 2ect_A Ring finger protein 126 99.1 5.6E-11 1.9E-15 88.5 5.4 51 144-195 12-65 (78)
70 3htk_C E3 SUMO-protein ligase 99.1 2.1E-11 7.3E-16 110.3 3.1 72 143-217 177-252 (267)
71 1iym_A EL5; ring-H2 finger, ub 99.1 5.5E-11 1.9E-15 82.4 4.4 48 145-193 3-54 (55)
72 2ecn_A Ring finger protein 141 99.1 1.8E-11 6.2E-16 89.2 1.7 51 142-194 10-60 (70)
73 2lv9_A Histone-lysine N-methyl 99.1 1.2E-10 4.1E-15 90.8 6.1 49 13-64 29-77 (98)
74 2ep4_A Ring finger protein 24; 99.1 6.8E-11 2.3E-15 87.1 3.3 51 143-194 11-64 (74)
75 2ecm_A Ring finger and CHY zin 99.1 7.6E-11 2.6E-15 81.6 3.3 46 147-193 5-54 (55)
76 4ic3_A E3 ubiquitin-protein li 99.0 4.1E-11 1.4E-15 88.6 1.8 52 138-194 15-67 (74)
77 2xeu_A Ring finger protein 4; 99.0 3.1E-11 1.1E-15 86.1 0.9 49 146-195 2-57 (64)
78 1chc_A Equine herpes virus-1 r 99.0 9.2E-11 3.2E-15 84.9 3.5 48 146-194 4-52 (68)
79 2kiz_A E3 ubiquitin-protein li 99.0 9.7E-11 3.3E-15 85.1 3.3 48 146-194 13-63 (69)
80 4gne_A Histone-lysine N-methyl 99.0 9.7E-11 3.3E-15 92.4 3.2 50 10-65 13-64 (107)
81 2ecg_A Baculoviral IAP repeat- 99.0 2.1E-10 7E-15 85.0 3.3 52 138-194 16-68 (75)
82 1x4j_A Ring finger protein 38; 99.0 1.3E-10 4.4E-15 85.9 2.0 49 145-194 21-72 (75)
83 2l0b_A E3 ubiquitin-protein li 99.0 1.5E-10 5E-15 89.1 2.3 49 145-194 38-89 (91)
84 4ap4_A E3 ubiquitin ligase RNF 98.9 1.9E-10 6.4E-15 93.9 1.1 50 145-195 5-61 (133)
85 1v87_A Deltex protein 2; ring- 98.9 6.9E-10 2.4E-14 88.6 4.4 48 147-194 25-94 (114)
86 4ap4_A E3 ubiquitin ligase RNF 98.9 7.2E-11 2.4E-15 96.4 -2.9 47 147-194 72-125 (133)
87 2yho_A E3 ubiquitin-protein li 98.9 2.2E-10 7.6E-15 85.8 -0.4 52 138-194 9-61 (79)
88 1wen_A Inhibitor of growth fam 98.8 2.6E-09 8.9E-14 78.1 4.9 55 5-64 7-66 (71)
89 2vnf_A ING 4, P29ING4, inhibit 98.8 7E-10 2.4E-14 78.5 1.0 46 12-62 10-58 (60)
90 2ecl_A Ring-box protein 2; RNF 98.8 2.5E-09 8.4E-14 80.4 3.3 47 147-194 15-76 (81)
91 3v43_A Histone acetyltransfera 98.8 1.3E-09 4.4E-14 87.1 1.9 51 11-61 4-62 (112)
92 2lbm_A Transcriptional regulat 98.7 1.1E-09 3.6E-14 90.6 -0.0 50 12-65 63-119 (142)
93 2y1n_A E3 ubiquitin-protein li 98.7 4.1E-09 1.4E-13 100.9 3.4 53 142-194 327-379 (389)
94 3c6w_A P28ING5, inhibitor of g 98.7 2E-09 6.9E-14 75.8 0.8 47 11-62 8-57 (59)
95 1weu_A Inhibitor of growth fam 98.7 1.9E-08 6.6E-13 76.8 6.0 54 6-64 28-86 (91)
96 2jmi_A Protein YNG1, ING1 homo 98.7 6.8E-09 2.3E-13 79.2 3.4 47 10-61 24-74 (90)
97 2vje_A E3 ubiquitin-protein li 98.7 3.8E-09 1.3E-13 75.7 1.6 47 147-194 8-57 (64)
98 2g6q_A Inhibitor of growth pro 98.7 2.9E-09 9.8E-14 75.8 0.8 47 11-62 10-59 (62)
99 2ea5_A Cell growth regulator w 98.6 2.1E-08 7E-13 72.8 4.4 44 146-194 14-58 (68)
100 2vje_B MDM4 protein; proto-onc 98.6 6.4E-09 2.2E-13 74.3 1.4 47 147-194 7-56 (63)
101 3dpl_R Ring-box protein 1; ubi 98.6 1.6E-08 5.5E-13 79.9 3.8 47 146-193 36-100 (106)
102 3t6p_A Baculoviral IAP repeat- 98.6 1.2E-08 4.2E-13 96.8 2.7 53 137-194 285-338 (345)
103 1wim_A KIAA0161 protein; ring 98.5 1.8E-08 6.2E-13 77.7 1.3 49 146-194 4-66 (94)
104 2bay_A PRE-mRNA splicing facto 98.5 2.8E-08 9.6E-13 70.5 1.4 48 147-195 3-51 (61)
105 3ql9_A Transcriptional regulat 98.5 6.2E-09 2.1E-13 84.5 -3.0 50 12-65 57-113 (129)
106 2kwj_A Zinc finger protein DPF 98.4 2.8E-08 9.5E-13 79.6 0.2 48 13-61 2-59 (114)
107 1x4i_A Inhibitor of growth pro 98.3 8E-08 2.7E-12 69.9 0.9 47 11-62 5-54 (70)
108 2d8s_A Cellular modulator of i 98.3 4.2E-07 1.4E-11 68.0 4.4 48 147-194 15-70 (80)
109 4a0k_B E3 ubiquitin-protein li 98.3 8.7E-08 3E-12 76.9 0.3 46 147-193 48-111 (117)
110 3o70_A PHD finger protein 13; 98.2 8.4E-07 2.9E-11 64.1 3.3 49 11-62 18-66 (68)
111 1we9_A PHD finger family prote 98.1 1.2E-06 4.1E-11 62.5 2.3 54 11-65 5-60 (64)
112 1wil_A KIAA1045 protein; ring 98.0 8.7E-07 3E-11 65.4 0.0 53 10-64 13-77 (89)
113 1wee_A PHD finger family prote 97.9 3.8E-06 1.3E-10 61.4 2.6 49 12-62 16-65 (72)
114 2ct0_A Non-SMC element 1 homol 97.9 2E-05 7E-10 57.7 5.4 48 147-194 15-64 (74)
115 3o7a_A PHD finger protein 13 v 97.8 6.2E-06 2.1E-10 56.3 1.6 44 17-62 8-51 (52)
116 3vk6_A E3 ubiquitin-protein li 97.8 1.1E-05 3.6E-10 62.0 2.6 46 149-194 3-49 (101)
117 2rsd_A E3 SUMO-protein ligase 97.7 1.3E-05 4.4E-10 57.9 2.6 49 12-61 10-63 (68)
118 2vpb_A Hpygo1, pygopus homolog 97.7 2.5E-06 8.6E-11 61.0 -1.5 48 11-61 7-64 (65)
119 1vyx_A ORF K3, K3RING; zinc-bi 97.6 4.1E-05 1.4E-09 53.8 3.5 48 147-194 6-59 (60)
120 2xb1_A Pygopus homolog 2, B-ce 97.6 1.2E-05 4.2E-10 63.1 0.8 51 13-64 4-62 (105)
121 2ri7_A Nucleosome-remodeling f 97.6 3.9E-06 1.3E-10 71.9 -2.4 50 11-62 7-58 (174)
122 1wem_A Death associated transc 97.5 2.5E-06 8.7E-11 63.0 -3.5 50 13-64 17-71 (76)
123 2kgg_A Histone demethylase jar 97.5 1.3E-05 4.5E-10 54.6 0.2 47 14-61 4-52 (52)
124 1wep_A PHF8; structural genomi 97.5 1.7E-05 5.8E-10 58.9 0.4 51 12-64 12-64 (79)
125 1wew_A DNA-binding family prot 97.3 4.4E-05 1.5E-09 56.5 0.8 51 12-64 16-73 (78)
126 4bbq_A Lysine-specific demethy 97.2 0.00011 3.7E-09 58.6 1.5 55 9-64 56-115 (117)
127 3k1l_B Fancl; UBC, ring, RWD, 97.1 0.00014 4.6E-09 68.2 1.7 51 146-196 307-375 (381)
128 3kqi_A GRC5, PHD finger protei 96.9 0.0001 3.5E-09 54.1 -0.5 48 14-62 11-60 (75)
129 3m62_A Ubiquitin conjugation f 96.6 0.0011 3.9E-08 69.7 3.8 74 141-218 885-959 (968)
130 3lqh_A Histone-lysine N-methyl 96.5 0.0012 4.1E-08 56.8 2.7 52 13-65 3-65 (183)
131 3pur_A Lysine-specific demethy 96.4 0.00096 3.3E-08 65.8 2.0 37 26-62 57-93 (528)
132 2jun_A Midline-1; B-BOX, TRIM, 96.1 0.0022 7.4E-08 49.3 2.2 32 146-177 2-36 (101)
133 4gne_A Histone-lysine N-methyl 95.7 0.0045 1.5E-07 48.4 2.5 45 7-57 54-98 (107)
134 3kv5_D JMJC domain-containing 95.3 0.0015 5E-08 64.6 -2.2 49 12-62 37-87 (488)
135 3nw0_A Non-structural maintena 94.4 0.045 1.6E-06 48.8 5.3 48 147-194 180-229 (238)
136 3kv4_A PHD finger protein 8; e 93.4 0.0047 1.6E-07 60.2 -3.3 48 14-62 6-55 (447)
137 2ku7_A MLL1 PHD3-CYP33 RRM chi 92.7 0.039 1.3E-06 44.2 1.7 40 26-65 1-46 (140)
138 2ko5_A Ring finger protein Z; 92.0 0.08 2.7E-06 39.9 2.5 48 145-195 26-74 (99)
139 1iym_A EL5; ring-H2 finger, ub 87.5 0.28 9.5E-06 32.5 2.1 49 10-63 3-52 (55)
140 3i2d_A E3 SUMO-protein ligase 86.3 0.41 1.4E-05 45.2 3.2 65 145-212 247-315 (371)
141 4fo9_A E3 SUMO-protein ligase 85.4 0.46 1.6E-05 44.7 3.1 65 144-211 212-280 (360)
142 2lri_C Autoimmune regulator; Z 85.4 1 3.6E-05 31.6 4.2 46 147-192 12-60 (66)
143 2cs3_A Protein C14ORF4, MY039 85.2 0.54 1.9E-05 34.2 2.7 34 146-179 14-51 (93)
144 4bbq_A Lysine-specific demethy 83.4 0.14 4.8E-06 40.2 -1.2 34 13-61 8-41 (117)
145 3rsn_A SET1/ASH2 histone methy 83.4 0.93 3.2E-05 38.3 3.8 46 18-64 10-60 (177)
146 1weo_A Cellulose synthase, cat 83.0 1.5 5E-05 32.6 4.2 48 147-194 16-70 (93)
147 1x4j_A Ring finger protein 38; 81.7 0.21 7.1E-06 35.6 -0.7 51 10-65 21-71 (75)
148 2d8s_A Cellular modulator of i 80.7 0.58 2E-05 34.2 1.4 51 11-65 14-69 (80)
149 2lbm_A Transcriptional regulat 80.2 2.8 9.6E-05 34.1 5.5 43 148-190 64-116 (142)
150 1bor_A Transcription factor PM 79.6 2.3 7.9E-05 28.3 4.1 44 11-65 5-48 (56)
151 1mm2_A MI2-beta; PHD, zinc fin 78.7 1.9 6.4E-05 29.6 3.4 46 147-192 9-57 (61)
152 2ect_A Ring finger protein 126 78.3 1.9 6.6E-05 30.5 3.6 52 9-65 12-63 (78)
153 3a1b_A DNA (cytosine-5)-methyl 77.0 0.4 1.4E-05 39.8 -0.5 50 12-65 79-136 (159)
154 4a0k_B E3 ubiquitin-protein li 76.7 0.55 1.9E-05 37.0 0.2 47 12-63 48-109 (117)
155 3k1l_B Fancl; UBC, ring, RWD, 75.4 0.88 3E-05 42.7 1.2 34 10-43 306-344 (381)
156 1vyx_A ORF K3, K3RING; zinc-bi 75.1 0.18 6.2E-06 34.8 -2.7 51 11-64 5-57 (60)
157 2k1p_A Zinc finger RAN-binding 73.9 1.4 4.9E-05 26.4 1.5 15 51-65 3-17 (33)
158 2ecm_A Ring finger and CHY zin 72.9 0.55 1.9E-05 30.9 -0.6 49 11-64 4-53 (55)
159 2kiz_A E3 ubiquitin-protein li 72.7 0.38 1.3E-05 33.5 -1.6 51 10-65 12-62 (69)
160 2lk0_A RNA-binding protein 5; 72.5 1.1 3.8E-05 26.7 0.8 13 52-64 3-15 (32)
161 3dpl_R Ring-box protein 1; ubi 72.0 0.55 1.9E-05 36.3 -0.9 47 12-63 37-98 (106)
162 2l5u_A Chromodomain-helicase-D 71.8 2.3 8E-05 29.1 2.4 44 147-190 11-57 (61)
163 3ql9_A Transcriptional regulat 71.5 4.9 0.00017 32.1 4.6 57 148-214 58-124 (129)
164 2ecl_A Ring-box protein 2; RNF 71.1 0.82 2.8E-05 33.2 -0.1 49 11-64 14-74 (81)
165 2ct0_A Non-SMC element 1 homol 70.8 1.8 6E-05 31.1 1.7 49 11-64 14-62 (74)
166 2ecv_A Tripartite motif-contai 69.8 0.94 3.2E-05 32.5 0.0 53 9-65 16-70 (85)
167 1f62_A Transcription factor WS 69.7 4 0.00014 26.6 3.2 42 149-190 2-49 (51)
168 2ecj_A Tripartite motif-contai 69.6 1.2 4E-05 29.5 0.5 46 10-60 13-58 (58)
169 2ysl_A Tripartite motif-contai 69.4 0.8 2.7E-05 32.1 -0.4 52 9-65 17-68 (73)
170 2ep4_A Ring finger protein 24; 69.2 0.53 1.8E-05 33.2 -1.4 52 9-65 12-63 (74)
171 3l11_A E3 ubiquitin-protein li 69.2 1.4 4.8E-05 33.9 0.9 49 10-65 13-61 (115)
172 1v87_A Deltex protein 2; ring- 69.0 0.71 2.4E-05 35.5 -0.9 54 11-65 24-93 (114)
173 1weq_A PHD finger protein 7; s 68.4 4.4 0.00015 29.9 3.4 35 24-62 43-78 (85)
174 2l0b_A E3 ubiquitin-protein li 68.4 0.5 1.7E-05 35.1 -1.8 50 10-64 38-87 (91)
175 2egp_A Tripartite motif-contai 68.3 2.7 9.2E-05 29.7 2.2 52 10-65 10-64 (79)
176 2ecw_A Tripartite motif-contai 67.6 0.89 3E-05 32.6 -0.5 53 9-65 16-70 (85)
177 1e4u_A Transcriptional repress 66.1 1.9 6.4E-05 31.2 1.0 59 1-65 1-61 (78)
178 1wd2_A Ariadne-1 protein homol 65.0 2.7 9.3E-05 28.8 1.6 34 147-180 6-47 (60)
179 2k16_A Transcription initiatio 64.1 2.6 9E-05 30.0 1.5 48 147-194 18-71 (75)
180 1fp0_A KAP-1 corepressor; PHD 63.6 4.9 0.00017 29.8 2.9 46 146-191 24-72 (88)
181 1wen_A Inhibitor of growth fam 63.5 16 0.00055 25.7 5.6 47 146-193 15-67 (71)
182 2yql_A PHD finger protein 21A; 62.8 1.6 5.6E-05 29.3 0.1 44 147-190 9-55 (56)
183 2ecy_A TNF receptor-associated 62.1 0.97 3.3E-05 31.1 -1.2 49 10-65 13-61 (66)
184 3o36_A Transcription intermedi 61.8 4.4 0.00015 34.1 2.7 46 147-192 4-52 (184)
185 2d8t_A Dactylidin, ring finger 61.5 1.3 4.5E-05 30.9 -0.6 49 9-65 12-60 (71)
186 1weu_A Inhibitor of growth fam 61.1 11 0.00037 28.1 4.4 47 145-193 34-87 (91)
187 2fiy_A Protein FDHE homolog; F 60.7 5.2 0.00018 36.8 3.1 41 10-63 180-231 (309)
188 2ysj_A Tripartite motif-contai 58.7 0.68 2.3E-05 31.5 -2.5 47 9-60 17-63 (63)
189 2yt5_A Metal-response element- 58.1 2.6 9.1E-05 29.1 0.5 48 146-193 5-63 (66)
190 1jm7_A BRCA1, breast cancer ty 57.4 1.4 4.7E-05 33.6 -1.2 49 12-65 21-69 (112)
191 2ro1_A Transcription intermedi 56.7 7.2 0.00025 33.0 3.2 44 149-192 4-50 (189)
192 1xwh_A Autoimmune regulator; P 56.5 2.9 9.9E-05 29.1 0.5 46 147-192 8-56 (66)
193 2co8_A NEDD9 interacting prote 55.8 18 0.00061 25.7 4.8 52 11-65 14-76 (82)
194 3nw0_A Non-structural maintena 55.5 2.6 8.9E-05 37.3 0.2 47 12-63 180-226 (238)
195 3u5n_A E3 ubiquitin-protein li 55.4 4.3 0.00015 34.9 1.5 45 148-192 8-55 (207)
196 1wil_A KIAA1045 protein; ring 55.2 15 0.00051 27.0 4.1 46 144-190 12-75 (89)
197 2gmg_A Hypothetical protein PF 54.6 4.8 0.00016 30.9 1.5 31 157-193 65-95 (105)
198 2puy_A PHD finger protein 21A; 54.0 3.9 0.00013 27.8 0.9 45 147-191 5-52 (60)
199 2l43_A N-teminal domain from h 51.6 4.4 0.00015 30.0 0.9 50 145-194 23-78 (88)
200 2pv0_B DNA (cytosine-5)-methyl 51.5 2.1 7.1E-05 40.6 -1.2 55 7-65 85-150 (386)
201 1pyl_A Ribonuclease; alpha-bet 51.2 30 0.001 26.0 5.4 36 282-323 32-76 (97)
202 2jne_A Hypothetical protein YF 51.1 2.6 9E-05 31.8 -0.5 42 147-194 32-73 (101)
203 2jrp_A Putative cytoplasmic pr 50.7 3.4 0.00012 30.2 0.1 40 148-193 3-42 (81)
204 2lv9_A Histone-lysine N-methyl 50.0 11 0.00037 28.4 2.9 43 147-190 28-75 (98)
205 1wev_A Riken cDNA 1110020M19; 48.3 4.7 0.00016 29.8 0.6 47 147-193 16-74 (88)
206 1n0z_A ZNF265; zinc finger, RN 47.6 11 0.00038 24.1 2.2 18 48-65 8-27 (45)
207 1z60_A TFIIH basal transcripti 46.2 17 0.00058 24.8 3.1 40 148-188 16-58 (59)
208 3mjh_B Early endosome antigen 45.6 2.8 9.5E-05 25.4 -0.9 14 147-160 5-18 (34)
209 2zet_C Melanophilin; complex, 45.0 2.3 7.8E-05 35.1 -1.8 44 147-190 68-116 (153)
210 2jmo_A Parkin; IBR, E3 ligase, 44.6 4.6 0.00016 29.2 -0.0 33 147-179 25-70 (80)
211 1y02_A CARP2, FYVE-ring finger 44.4 2.1 7.2E-05 33.8 -2.0 45 147-192 19-67 (120)
212 2e6r_A Jumonji/ARID domain-con 44.3 4.2 0.00015 30.3 -0.3 45 146-190 15-65 (92)
213 2pv0_B DNA (cytosine-5)-methyl 44.2 14 0.00049 34.9 3.3 46 146-191 92-148 (386)
214 2ct7_A Ring finger protein 31; 43.7 6.3 0.00021 28.8 0.6 29 149-177 27-61 (86)
215 2ct2_A Tripartite motif protei 43.0 4.8 0.00016 28.9 -0.1 55 9-65 12-67 (88)
216 1e8j_A Rubredoxin; iron-sulfur 42.9 14 0.00048 24.4 2.2 12 53-64 35-46 (52)
217 1zbd_B Rabphilin-3A; G protein 42.6 2.4 8.3E-05 34.1 -2.0 44 147-190 55-106 (134)
218 2e6s_A E3 ubiquitin-protein li 42.4 14 0.00049 26.5 2.3 42 149-190 28-76 (77)
219 1zfo_A LAsp-1; LIM domain, zin 42.4 10 0.00035 22.0 1.3 28 13-42 4-31 (31)
220 1lni_A RNAse SA, guanyl-specif 42.3 59 0.002 24.4 5.8 15 310-324 61-75 (96)
221 1m3v_A FLIN4, fusion of the LI 42.2 14 0.00047 28.6 2.4 47 147-194 32-81 (122)
222 3a1b_A DNA (cytosine-5)-methyl 40.9 15 0.0005 30.3 2.5 46 146-191 78-134 (159)
223 1z2q_A LM5-1; membrane protein 40.6 19 0.00066 26.1 2.9 32 146-177 20-55 (84)
224 1jm7_B BARD1, BRCA1-associated 39.1 20 0.00067 27.4 2.9 45 11-64 21-65 (117)
225 4ayc_A E3 ubiquitin-protein li 38.7 2.5 8.7E-05 33.7 -2.5 46 12-65 53-98 (138)
226 3shb_A E3 ubiquitin-protein li 38.7 15 0.0005 26.4 1.9 42 149-190 28-76 (77)
227 1joc_A EEA1, early endosomal a 38.5 16 0.00056 28.7 2.4 31 147-177 69-103 (125)
228 1x4u_A Zinc finger, FYVE domai 37.8 20 0.0007 25.9 2.6 31 147-177 14-48 (84)
229 2yw8_A RUN and FYVE domain-con 37.6 21 0.00072 25.7 2.7 31 147-177 19-53 (82)
230 2jny_A Uncharacterized BCR; st 36.8 17 0.00059 25.4 2.0 29 11-39 9-40 (67)
231 1wfk_A Zinc finger, FYVE domai 36.6 20 0.0007 26.3 2.5 31 147-177 9-43 (88)
232 3fl2_A E3 ubiquitin-protein li 36.3 2.3 7.8E-05 33.2 -3.1 48 11-65 51-98 (124)
233 4b2u_A S67; toxin, ICK; NMR {S 36.0 5 0.00017 23.5 -0.8 14 51-64 15-28 (36)
234 2o35_A Hypothetical protein DU 35.1 10 0.00034 28.7 0.5 13 168-180 42-54 (105)
235 3fyb_A Protein of unknown func 34.9 10 0.00034 28.6 0.5 12 168-179 41-52 (104)
236 2ckl_B Ubiquitin ligase protei 34.8 2.8 9.5E-05 34.5 -2.9 48 12-65 54-101 (165)
237 3t7l_A Zinc finger FYVE domain 34.5 17 0.00059 26.7 1.8 32 147-178 20-55 (90)
238 1vfy_A Phosphatidylinositol-3- 33.6 23 0.00079 24.8 2.3 30 148-177 12-45 (73)
239 2kn9_A Rubredoxin; metalloprot 33.5 20 0.00068 26.1 1.9 38 26-65 26-71 (81)
240 2xqn_T Testin, TESS; metal-bin 33.3 20 0.00068 27.6 2.1 46 146-194 29-75 (126)
241 1faq_A RAF-1; transferase, ser 30.7 50 0.0017 21.1 3.4 32 11-44 13-44 (52)
242 2cup_A Skeletal muscle LIM-pro 30.6 26 0.0009 25.6 2.3 45 146-193 32-77 (101)
243 2rgt_A Fusion of LIM/homeobox 30.4 39 0.0013 27.5 3.5 45 146-193 32-76 (169)
244 2lq6_A Bromodomain-containing 30.3 16 0.00053 26.9 0.9 31 12-43 17-49 (87)
245 2cu8_A Cysteine-rich protein 2 29.8 28 0.00094 24.1 2.2 30 12-43 9-38 (76)
246 3ask_A E3 ubiquitin-protein li 27.5 22 0.00074 31.1 1.5 42 149-190 176-224 (226)
247 2jtn_A LIM domain-binding prot 27.4 35 0.0012 28.1 2.8 46 146-194 86-131 (182)
248 1v5n_A PDI-like hypothetical p 27.2 17 0.00058 26.8 0.6 33 13-46 48-80 (89)
249 1pft_A TFIIB, PFTFIIBN; N-term 26.6 36 0.0012 21.8 2.1 27 14-40 7-37 (50)
250 1dvp_A HRS, hepatocyte growth 25.8 33 0.0011 29.4 2.4 32 146-177 160-195 (220)
251 2xjy_A Rhombotin-2; oncoprotei 25.7 29 0.00099 26.8 1.8 48 146-194 28-78 (131)
252 2pk7_A Uncharacterized protein 25.2 26 0.00088 24.6 1.2 27 13-39 9-38 (69)
253 3zyq_A Hepatocyte growth facto 25.1 28 0.00097 30.1 1.8 31 147-177 164-198 (226)
254 2hf1_A Tetraacyldisaccharide-1 24.7 25 0.00085 24.6 1.1 25 13-37 9-36 (68)
255 1iml_A CRIP, cysteine rich int 24.5 26 0.00087 24.3 1.1 28 14-43 2-29 (76)
256 2jr6_A UPF0434 protein NMA0874 24.3 26 0.00089 24.5 1.1 27 13-39 9-38 (68)
257 2js4_A UPF0434 protein BB2007; 24.3 26 0.00088 24.7 1.1 27 13-39 9-38 (70)
258 2d8y_A Eplin protein; LIM doma 23.8 75 0.0026 22.7 3.7 31 11-43 14-44 (91)
259 2d9g_A YY1-associated factor 2 23.8 34 0.0011 22.6 1.5 15 49-63 6-20 (53)
260 3mpx_A FYVE, rhogef and PH dom 23.8 17 0.00057 34.5 0.0 47 146-192 374-430 (434)
261 2dj7_A Actin-binding LIM prote 23.7 49 0.0017 23.3 2.6 32 10-43 13-44 (80)
262 6rxn_A Rubredoxin; electron tr 22.0 28 0.00096 22.4 0.8 12 53-64 29-40 (46)
263 2kpi_A Uncharacterized protein 21.6 55 0.0019 21.8 2.3 30 11-40 9-41 (56)
264 1dx8_A Rubredoxin; electron tr 21.5 42 0.0014 23.6 1.8 13 53-65 39-51 (70)
265 4rxn_A Rubredoxin; electron tr 20.8 35 0.0012 22.7 1.1 12 53-64 35-46 (54)
266 1kbe_A Kinase suppressor of RA 20.5 63 0.0022 20.9 2.3 32 13-46 15-46 (49)
267 1wig_A KIAA1808 protein; LIM d 20.2 1E+02 0.0035 21.0 3.7 36 149-193 7-42 (73)
268 2fiy_A Protein FDHE homolog; F 20.2 23 0.00079 32.4 0.2 46 145-191 180-231 (309)
269 1rut_X Flinc4, fusion protein 20.1 19 0.00066 30.0 -0.4 48 146-194 31-81 (188)
No 1
>3oln_A E3 ubiquitin-protein ligase UHRF2; DNA-binding, metal-binding, nucleus, phosphorylation transcription, transcription regulation; 2.30A {Homo sapiens} SCOP: b.122.1.12
Probab=99.95 E-value=1.4e-28 Score=216.57 Aligned_cols=89 Identities=43% Similarity=0.782 Sum_probs=68.4
Q ss_pred hHHHhhhCccccccccccc--cCCCCCCCCCCCCCCcccCCCCcccceecchhhhhhhcccCCCcCCccCCCCCCcEEEE
Q 019484 243 TERAKRKGKANAASGKIFV--TLPPDHFGPILAENDPERNQGVLVGESWEGRLECRQWGVHYPPVAGIAGQSKCGAQSVV 320 (340)
Q Consensus 243 ~era~r~~~~na~sG~~~~--~~~~~~~G~ip~~~d~~r~~g~~vG~~~~~r~~~~~~g~h~~~~~Gi~~~~~~ga~si~ 320 (340)
++.+++|++++|++|++|+ ++|.++||+|| ||+||+||++|++|+++|+|+|+|+||+|+.+.||+|||
T Consensus 3 ~~~~~~~g~~~a~~g~~~~~~~~p~~~~G~IP---------GV~VGd~f~~R~el~~~GlH~p~~aGI~g~~~~GA~SIV 73 (231)
T 3oln_A 3 TESRRDWGRGMACVGRTRECTIVPSNHYGPIP---------GIPVGSTWRFRVQVSEAGVHRPHVGGIHGRSNDGAYSLV 73 (231)
T ss_dssp ---------------------CCCTTCCSCCT---------TCCTTCEESSHHHHHHTTSSCCSSCSEEEETTTEEEEEE
T ss_pred ccccccccccccccceeEEEeecCCccCcCCC---------CCcCcCEEccHHHHhhhCCCCcccCCcccCCCCCeEEEE
Confidence 3466789999999999998 56999999999 999999999999999999999999999999999999999
Q ss_pred ecCccccCCCCCceEEEecC
Q 019484 321 LSGGYEDDEDHGEWFLYTGR 340 (340)
Q Consensus 321 ~sg~y~~d~d~g~~~~ytg~ 340 (340)
+||||+||+|+||+|+||||
T Consensus 74 lSGgYeDD~D~Gd~liYTGs 93 (231)
T 3oln_A 74 LAGGFADEVDRGDEFTYTGS 93 (231)
T ss_dssp ESSCSSTTCBCSSEEEEECC
T ss_pred ecCCccccCCCCCEEEEEcC
Confidence 99999999999999999997
No 2
>3fde_A E3 ubiquitin-protein ligase UHRF1; SRA domain, base flipping, DNA CPG methylation, cell cycle, developmental protein, DNA damage; HET: 5CM; 1.41A {Mus musculus} SCOP: b.122.1.12 PDB: 2zo0_B* 2zo2_B* 3f8i_A* 2zo1_B* 3f8j_B* 2zkd_A* 2zke_A* 2zkf_A* 2zkg_A 3dwh_A 3bi7_A 3clz_A*
Probab=99.90 E-value=4.6e-25 Score=192.68 Aligned_cols=69 Identities=57% Similarity=1.013 Sum_probs=67.6
Q ss_pred CCCCCCCCCCCCCCcccCCCCcccceecchhhhhhhcccCCCcCCccCCCCCCcEEEEecCccccCCCCCceEEEecC
Q 019484 263 LPPDHFGPILAENDPERNQGVLVGESWEGRLECRQWGVHYPPVAGIAGQSKCGAQSVVLSGGYEDDEDHGEWFLYTGR 340 (340)
Q Consensus 263 ~~~~~~G~ip~~~d~~r~~g~~vG~~~~~r~~~~~~g~h~~~~~Gi~~~~~~ga~si~~sg~y~~d~d~g~~~~ytg~ 340 (340)
+|++|||+|| ||+||+||.+|++|+++|+|+++|+||+|.++.||+|||+||||+||+|+||+|+||||
T Consensus 2 ~p~~~~G~iP---------Gv~VGd~f~~R~el~~~G~H~~~qaGI~g~~~~GA~SIVlSGGY~DD~D~Gd~l~YTGs 70 (212)
T 3fde_A 2 MPANHFGPIP---------GVPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDGAYSLVLAGGYEDDVDNGNYFTYTGS 70 (212)
T ss_dssp CCTTCCSCCT---------TCCTTCEESSHHHHHHHTSSCCSSCSEEEETTTEEEEEEECSCSTTCEECSSEEEEECS
T ss_pred CCcccccCCC---------CCcCccEecCHHHHhHhccCCCCcCCcccCCCcceEEEEeCCCcccCCCCCCEEEEecc
Confidence 6999999999 99999999999999999999999999999999999999999999999999999999996
No 3
>2pb7_A E3 ubiquitin-protein ligase UHRF1; beta barrel, NEW fold; 1.90A {Homo sapiens} SCOP: b.122.1.12
Probab=99.90 E-value=1.1e-24 Score=192.89 Aligned_cols=72 Identities=53% Similarity=0.970 Sum_probs=69.5
Q ss_pred cccCCCCCCCCCCCCCCcccCCCCcccceecchhhhhhhcccCCCcCCccCCCCCCcEEEEecCccccCCCCCceEEEec
Q 019484 260 FVTLPPDHFGPILAENDPERNQGVLVGESWEGRLECRQWGVHYPPVAGIAGQSKCGAQSVVLSGGYEDDEDHGEWFLYTG 339 (340)
Q Consensus 260 ~~~~~~~~~G~ip~~~d~~r~~g~~vG~~~~~r~~~~~~g~h~~~~~Gi~~~~~~ga~si~~sg~y~~d~d~g~~~~ytg 339 (340)
..++|.+|||+|| ||.||+||.+|++|+++|+|+++++||+|....||+|||+||||+||.|+||+|+|||
T Consensus 6 ~~~~~~~~~G~iP---------GV~VGd~f~~R~el~~~GlH~~~~aGI~g~~~~GA~SIVlSGgYeDD~D~GD~liYTG 76 (239)
T 2pb7_A 6 CTIVPSNHYGPIP---------GIPVGTMWRFRVQVSESGVHRPHVAGIHGRSNDGAYSLVLAGGYEDDVDHGNFFTYTG 76 (239)
T ss_dssp CCSSCTTCCSCCT---------TCCTTCEESSHHHHHHHTSSCCSSCSEEEETTTEEEEEEESSCSTTCCBCSSEEEEEC
T ss_pred EEecCCCcccCCC---------CCcCCCEECCHHHHHHhCCccccccCcccCCCCCEEEEEECCCccccccCCcEEEEEc
Confidence 4567999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 019484 340 R 340 (340)
Q Consensus 340 ~ 340 (340)
+
T Consensus 77 s 77 (239)
T 2pb7_A 77 S 77 (239)
T ss_dssp C
T ss_pred c
Confidence 6
No 4
>3q0b_X Histone-lysine N-methyltransferase, H3 lysine-9 S SUVH5; SRA, fully methylated CG, SUVH5, 5MC binding protein, fully methylated CG duplex DNA; HET: DNA 5CM; 2.20A {Arabidopsis thaliana} PDB: 3q0c_X* 3q0d_X* 3q0f_X*
Probab=99.87 E-value=3.5e-23 Score=176.49 Aligned_cols=66 Identities=36% Similarity=0.601 Sum_probs=62.7
Q ss_pred CCCCCCCCCCCcccCCCCcccceecchhhhhhhcccCCCcCCccCCCCC----CcEEEEecCccccCCCCCceEEEecC
Q 019484 266 DHFGPILAENDPERNQGVLVGESWEGRLECRQWGVHYPPVAGIAGQSKC----GAQSVVLSGGYEDDEDHGEWFLYTGR 340 (340)
Q Consensus 266 ~~~G~ip~~~d~~r~~g~~vG~~~~~r~~~~~~g~h~~~~~Gi~~~~~~----ga~si~~sg~y~~d~d~g~~~~ytg~ 340 (340)
++||+|| |++||+||++|++|+++|+|+|+|+||+++... ||+|||+||||+||+|+||+|+|||+
T Consensus 1 ~~~G~vp---------Gv~vGd~f~~R~el~~~G~H~~~~aGI~~~~~~~~~~gA~SIV~SggY~Dd~D~gd~l~YTG~ 70 (167)
T 3q0b_X 1 QIIGTVP---------GVEVGDEFQYRMELNLLGIHRPSQSGIDYMKDDGGELVATSIVSSGGYNDVLDNSDVLIYTGQ 70 (167)
T ss_dssp CCCSCCT---------TCCTTCEESCHHHHHHTTSCCCSSCSEEEEECSSSCEEEEEEEESSSTTCEECSSSEEEEECS
T ss_pred CcccCCC---------CCcCccEecchHHHhHhCcCCCccCCeecccccCCCcceEEEEeCCCcccccCCCCEEEEECC
Confidence 4699999 999999999999999999999999999988765 79999999999999999999999997
No 5
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.1e-16 Score=117.88 Aligned_cols=57 Identities=30% Similarity=0.733 Sum_probs=52.3
Q ss_pred CcCCCCCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCC-CccCCCCCCC
Q 019484 5 IQLPCNGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTL-LWECPDCTGD 63 (340)
Q Consensus 5 ~~~~~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~-~w~c~~c~~~ 63 (340)
+.+-|... .|.+|+...++++||+||.|+++||++||. |||+.+|+| +||||.|..+
T Consensus 20 ~~w~C~~c-~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~-Ppl~~~P~g~~W~C~~C~~d 77 (77)
T 2e6s_A 20 PEKKCHSC-SCRVCGGKHEPNMQLLCDECNVAYHIYCLN-PPLDKVPEEEYWYCPSCKTD 77 (77)
T ss_dssp SSSCCSSS-SCSSSCCCCCSTTEEECSSSCCEEETTSSS-SCCSSCCCSSCCCCTTTCCC
T ss_pred CCeECCCC-CCcCcCCcCCCCCEEEcCCCCccccccccC-CCccCCCCCCCcCCcCccCc
Confidence 45778766 999999998999999999999999999999 999999999 9999999753
No 6
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.63 E-value=4.8e-16 Score=118.08 Aligned_cols=59 Identities=17% Similarity=0.454 Sum_probs=52.6
Q ss_pred CCCcCCCCCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 3 HVIQLPCNGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 3 ~~~~~~~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
....+-.+++..|.+|+++. ++|+||.|+++||++||. |||+.+|+|+|+|+.|...+.
T Consensus 16 ~~~~~~d~n~~~C~vC~~~g---~LL~CD~C~~~fH~~Cl~-PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 16 DEFGTLDDSATICRVCQKPG---DLVMCNQCEFCFHLDCHL-PALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp CCCCSSSSSSSCCSSSCSSS---CCEECTTSSCEECTTSSS-TTCCCCCSSSCCCCSCCCCCS
T ss_pred ccccccCCCCCcCcCcCCCC---CEEECCCCCCceecccCC-CCCCCCcCCCcCCccccCCCc
Confidence 34457788899999999874 799999999999999999 999999999999999987654
No 7
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.61 E-value=1.7e-16 Score=109.35 Aligned_cols=48 Identities=25% Similarity=0.758 Sum_probs=45.8
Q ss_pred ccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCC
Q 019484 14 MCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTG 62 (340)
Q Consensus 14 ~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~ 62 (340)
.|.+|++..++++||+||.|+++||++||. |||+.+|+|+|+|+.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~-p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLR-PALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHC-TTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCC-CCcCCCCCCcEECcCccc
Confidence 589999998889999999999999999999 999999999999999975
No 8
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.61 E-value=2.9e-16 Score=113.62 Aligned_cols=53 Identities=26% Similarity=0.606 Sum_probs=47.0
Q ss_pred CCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCccc
Q 019484 11 GDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAAVA 67 (340)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~~~ 67 (340)
.+..|.+|+++ ++||+||.|+++||++||+ |||+.+|+|+|||+.|.....++
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~-P~l~~~P~g~W~C~~C~~~~~p~ 63 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHF-PAGTSRPGTGLRCRSCSGDVTPA 63 (66)
T ss_dssp TTCCCTTTSCC---TTCEECSSSCCEECHHHHC-TTTCCCCSSSCCCTTTTTCCCCC
T ss_pred CCCCcCCCCCC---CeEEECCCCCCceecccCC-CccCcCCCCCEECccccCCCccC
Confidence 46779999875 4799999999999999999 99999999999999998776533
No 9
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2e-16 Score=122.25 Aligned_cols=58 Identities=24% Similarity=0.652 Sum_probs=53.6
Q ss_pred CCcCCCCCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCC
Q 019484 4 VIQLPCNGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTG 62 (340)
Q Consensus 4 ~~~~~~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~ 62 (340)
...+.|.++..|.+|+...+++.||+||.|+++||++||. |||+.+|+|+||||.|..
T Consensus 8 ~s~~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~-Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 8 HSSAQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLL-PPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSS-SCCSSCCSSCCCCHHHHH
T ss_pred CchhhccCCCCCccCCCcCCCCCEEEcCCCCchhccccCC-CCcccCCCCCcCCccCcC
Confidence 3457788999999999998888999999999999999999 999999999999999964
No 10
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=99.60 E-value=5.1e-16 Score=115.62 Aligned_cols=57 Identities=32% Similarity=0.764 Sum_probs=51.8
Q ss_pred CcCCCCCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCC-ccCCCCCCC
Q 019484 5 IQLPCNGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLL-WECPDCTGD 63 (340)
Q Consensus 5 ~~~~~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~-w~c~~c~~~ 63 (340)
.++-|..- .|.+|++..++++||+||.|+++||++||. |||+.+|+|+ ||||.|..+
T Consensus 20 ~~W~C~~C-~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~-PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 20 VNRLCRVC-ACHLCGGRQDPDKQLMCDECDMAFHIYCLD-PPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp TTSCCTTT-SBTTTCCCSCGGGEEECTTTCCEEETTTSS-SCCSSCCSSSCCCCTTTC--
T ss_pred CCCCCCCC-cCCccCCCCCCcceeEeCCCCCccCcccCC-CcccCCCCCCceECcCcccc
Confidence 46778877 899999999999999999999999999999 9999999999 999999853
No 11
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.60 E-value=5e-16 Score=113.86 Aligned_cols=57 Identities=32% Similarity=0.771 Sum_probs=52.5
Q ss_pred CcCCCCCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCC-CccCCCCCCC
Q 019484 5 IQLPCNGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTL-LWECPDCTGD 63 (340)
Q Consensus 5 ~~~~~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~-~w~c~~c~~~ 63 (340)
+.+-|..- .|.+|++..+++.||+||.|+++||++||. |||+.+|+| +||||.|..+
T Consensus 12 ~~w~C~~C-~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~-Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 12 VNRLCRVC-ACHLCGGRQDPDKQLMCDECDMAFHIYCLD-PPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp TTSCCTTT-SBTTTCCCSCGGGEEECTTTCCEEEGGGSS-SCCSSCCSSSCCCCTTTSCC
T ss_pred CCeECCCC-CCcCCCCcCCCCCEEEcCCCCCceecccCC-CCcCCCCCCCCcCCcCccCc
Confidence 45778777 899999998899999999999999999999 999999999 9999999864
No 12
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.57 E-value=1.9e-15 Score=107.90 Aligned_cols=51 Identities=39% Similarity=0.893 Sum_probs=46.0
Q ss_pred CCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 11 GDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
++..|.+|++. .+||+||.|+++||++||. |||+.+|+|+|+|+.|.....
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~-ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 8 HMEFCRVCKDG---GELLCCDTCPSSYHIHCLN-PPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp SCSSCTTTCCC---SSCBCCSSSCCCBCSSSSS-SCCSSCCSSCCCCTTTTTTCC
T ss_pred CCCcCCCCCCC---CCEEEcCCCCHHHcccccC-CCcCcCCCCccCChhhcCchh
Confidence 46789999875 4899999999999999999 999999999999999987553
No 13
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.56 E-value=1.6e-15 Score=113.52 Aligned_cols=72 Identities=26% Similarity=0.447 Sum_probs=64.4
Q ss_pred cCCCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHHhhCC
Q 019484 144 FGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAKRSNT 218 (340)
Q Consensus 144 ~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~~~~~ 218 (340)
+.+.+.|+||+++|.+|++++|||+||..||.+|+..+...||.||..+.. ..+..|..|.++++.+++...
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~---~~l~~n~~l~~~i~~~~~~~~ 76 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH---AGLTPNYVLKSLIALWCESNG 76 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS---CCCEECTTTHHHHHHHHHHSC
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh---hhCccCHHHHHHHHHHHHHcC
Confidence 456899999999999999999999999999999998767899999999976 378889999999999987654
No 14
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=1.9e-15 Score=107.85 Aligned_cols=55 Identities=27% Similarity=0.706 Sum_probs=50.0
Q ss_pred CcCCCCCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCC
Q 019484 5 IQLPCNGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGD 63 (340)
Q Consensus 5 ~~~~~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~ 63 (340)
..++.+++..|.+|++. .+||+||.|+++||++||. |||+.+|+|+|+||.|...
T Consensus 4 ~~~~~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~-p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 4 GSYETDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLD-PDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCSSCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHC-TTCCSCCCSSCCCTTGGGG
T ss_pred CcccCCCCCCCccCCCC---CcEEECCCCChhhhhhccC-CCCCCCCCCceECcccccc
Confidence 34778889999999985 5899999999999999999 9999999999999999754
No 15
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.54 E-value=5.5e-15 Score=114.11 Aligned_cols=74 Identities=23% Similarity=0.415 Sum_probs=64.2
Q ss_pred hcCCCcccccccCCCCCCcccC-CCCcccchhhhhhhcc-CCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHHhhCC
Q 019484 143 IFGGSLNCSFCMQLPERPVTTP-CGHNFCLKCFQKWIGL-GKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAKRSNT 218 (340)
Q Consensus 143 ~~~~~~~C~iC~~~~~~pv~l~-CgH~FC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~~~~~ 218 (340)
.+.+.+.|+||+++|.+|++++ |||+||..||..|+.. +...||.||..+... ..+..|..|.++++.++....
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~--~~~~~n~~l~~~i~~~~~~~~ 84 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP--DALIANKFLRQAVNNFKNETG 84 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCT--TSCEECHHHHHHHHHHHHHHT
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCc--cccCcCHHHHHHHHHHHHHHh
Confidence 5667899999999999999999 9999999999999864 347999999997432 478899999999999988765
No 16
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.52 E-value=1.8e-14 Score=112.75 Aligned_cols=74 Identities=15% Similarity=0.005 Sum_probs=67.0
Q ss_pred hhhcCCCcccccccCCCCCCcccCCC-CcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHHhhCC
Q 019484 141 SDIFGGSLNCSFCMQLPERPVTTPCG-HNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAKRSNT 218 (340)
Q Consensus 141 ~~~~~~~~~C~iC~~~~~~pv~l~Cg-H~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~~~~~ 218 (340)
+..+.++|.||||+++|.+||+++|| |+||+.||.+|+.. ...||+|+.++.. ..+..|..|.++|+.++..+.
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~---~~L~pn~~Lk~~I~~~~~~~~ 90 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTM---DQIRPNTELKEKIQRWLAERK 90 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCT---TTSEECHHHHHHHHHHHHHST
T ss_pred hhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCCh---hhceEcHHHHHHHHHHHHHcc
Confidence 34567899999999999999999999 99999999999986 6799999999986 488999999999999988776
No 17
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.51 E-value=4.5e-15 Score=107.68 Aligned_cols=51 Identities=29% Similarity=0.879 Sum_probs=46.2
Q ss_pred CCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCC
Q 019484 10 NGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDA 64 (340)
Q Consensus 10 ~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~ 64 (340)
+++..|.+|+.+ .+||+||.|+++||++||. |||+.+|+|+|+|+.|....
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~-ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLS-PPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSS-SCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccC-CCcCcCCCCCeECccccCcc
Confidence 468899999986 4899999999999999999 99999999999999997544
No 18
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=5.8e-15 Score=103.55 Aligned_cols=49 Identities=31% Similarity=0.893 Sum_probs=44.6
Q ss_pred CCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCC
Q 019484 10 NGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTG 62 (340)
Q Consensus 10 ~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~ 62 (340)
.++..|.+|++. .+||+||.|+++||++||. |||+.+|+|+|+||.|..
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~-ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLD-PPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSS-SCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCC-CCcCCCCCCceEChhhhC
Confidence 357789999986 4899999999999999999 999999999999999953
No 19
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.50 E-value=1.1e-14 Score=111.01 Aligned_cols=72 Identities=14% Similarity=0.038 Sum_probs=64.7
Q ss_pred hhcCCCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHHhhC
Q 019484 142 DIFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAKRSN 217 (340)
Q Consensus 142 ~~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~~~~ 217 (340)
..+.+++.|+||+++|.+||+++|||+||+.||..|+.. ...||.|+.++.. ..+..|..|.++|+.++..+
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~---~~l~pn~~L~~~i~~~~~~~ 80 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTE---SMLEPVPELKEQIQAWMREK 80 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCG---GGCEECHHHHHHHHHHHHHH
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCCh---HhcchHHHHHHHHHHHHHHh
Confidence 456779999999999999999999999999999999985 6799999999986 38899999999999987654
No 20
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.49 E-value=4.5e-15 Score=113.75 Aligned_cols=55 Identities=24% Similarity=0.639 Sum_probs=48.0
Q ss_pred CCCCCCcccccccCCCC--CCceeeeCCCCCCcccCCCCCCCCCC----CCCCCccCCCCCC
Q 019484 7 LPCNGDGMCMRCKETPV--EEEQLCCKTCATPWHVACLVRPPESL----ASTLLWECPDCTG 62 (340)
Q Consensus 7 ~~~~~~~~c~~c~~~~~--~~~~l~c~~c~~~~h~~cl~~p~~~~----~p~~~w~c~~c~~ 62 (340)
|--+.+.+|.+|++... ...||+||.|+++||++||. |||+. +|+|+|||+.|..
T Consensus 11 ~~~e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~-Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 11 FAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHK-PQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp CHHHHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSS-SCCCHHHHHCTTCCCCCHHHHH
T ss_pred ccCCCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCC-CcccccccCCCCCCeeCccccc
Confidence 44456789999999865 47899999999999999999 99995 9999999999954
No 21
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.48 E-value=1.7e-14 Score=117.64 Aligned_cols=76 Identities=22% Similarity=0.447 Sum_probs=66.3
Q ss_pred hhhhhhcCCCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHHh
Q 019484 138 NELSDIFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAKR 215 (340)
Q Consensus 138 ~~~~~~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~~ 215 (340)
...+..+.+.+.|+||+++|.+|++++|||+||..||..|+......||.||..+... ..+..|..|.++++.+..
T Consensus 43 ~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~--~~~~~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 43 QLFLSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRS--YAMQVNQPLQTVLNQLFP 118 (124)
T ss_dssp HHHHHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT--CCCCCCHHHHHHHHHHST
T ss_pred HHHHHhCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCC--CCCCCCHHHHHHHHHHcc
Confidence 3556777788999999999999999999999999999999986567999999999763 378999999999988754
No 22
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.48 E-value=3.3e-14 Score=111.72 Aligned_cols=74 Identities=14% Similarity=0.011 Sum_probs=66.4
Q ss_pred hhhcCCCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHHhhCC
Q 019484 141 SDIFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAKRSNT 218 (340)
Q Consensus 141 ~~~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~~~~~ 218 (340)
...+.+.+.||||+++|.+||+++|||+||+.||..|+.. ...||.|+.++.. ..+..|..|.++|+.++..+.
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~---~~L~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTE---SMLEPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCT---TSSEECHHHHHHHHHHHHTTT
T ss_pred hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCCh---hhceECHHHHHHHHHHHHHhh
Confidence 3456789999999999999999999999999999999985 6899999999986 488999999999999987655
No 23
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=99.48 E-value=2.1e-14 Score=127.41 Aligned_cols=56 Identities=32% Similarity=0.767 Sum_probs=45.7
Q ss_pred cCCCCCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCC-CccCCCCCCC
Q 019484 6 QLPCNGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTL-LWECPDCTGD 63 (340)
Q Consensus 6 ~~~~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~-~w~c~~c~~~ 63 (340)
.+-|... .|.+|+...+++.||+||.|+++||++||. |||+.+|+| +|+||.|..+
T Consensus 169 ~w~C~~c-~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~-PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 169 NRLCRVC-ACHLCGGRQDPDKQLMCDECDMAFHIYCLD-PPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCCTTT-SCSSSCCCCC--CCEECSSSCCEECSCC---CCCCSCCSSSCCCCGGGC--
T ss_pred CEecCCC-CCcCCCCCCCCCCeEEcCCCCcceeCccCC-CCcccCCCCCCCCCcCCcCc
Confidence 3556555 899999999999999999999999999999 999999999 9999999754
No 24
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.47 E-value=1e-14 Score=103.79 Aligned_cols=48 Identities=31% Similarity=0.908 Sum_probs=44.3
Q ss_pred CCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCC
Q 019484 11 GDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTG 62 (340)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~ 62 (340)
++..|.+|++. .+||+||.|+++||++||. |||+.+|+|+|+||.|..
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~-ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLD-PPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSS-SCCSSCCCSCCCCHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCC-CCcCCCCCCceEChhccC
Confidence 47789999986 4899999999999999999 999999999999999964
No 25
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.46 E-value=2.1e-14 Score=115.46 Aligned_cols=57 Identities=25% Similarity=0.641 Sum_probs=52.7
Q ss_pred CcCCCCCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCC
Q 019484 5 IQLPCNGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTG 62 (340)
Q Consensus 5 ~~~~~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~ 62 (340)
+.|-|..-..|.+|+...+++.||+||.|+++||++||. |||+.+|+|+|||+.|..
T Consensus 51 ~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~-ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 51 YKWQCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLN-PPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp TTCCCGGGCCCTTTTCCTTTTTEEECSSSCCEEETTTSS-SCCSSCCSSCCCCHHHHH
T ss_pred CccCccccCccCcccccCCCCceEEcCCCCccccccccC-CCccCCCCCCeECccccc
Confidence 467788888999999998899999999999999999999 999999999999999963
No 26
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.46 E-value=1.4e-14 Score=113.75 Aligned_cols=78 Identities=13% Similarity=0.356 Sum_probs=68.0
Q ss_pred hhhhhhcCCCcccccccCCCCCCcc-cCCCCcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHHhh
Q 019484 138 NELSDIFGGSLNCSFCMQLPERPVT-TPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAKRS 216 (340)
Q Consensus 138 ~~~~~~~~~~~~C~iC~~~~~~pv~-l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~~~ 216 (340)
......+.+.+.|+||++.|.+|++ ++|||+||..||.+|+......||.||..+.. ..+..+..+.++++.+.+.
T Consensus 13 ~~~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~---~~l~~~~~~~~i~~~~~~l 89 (100)
T 3lrq_A 13 EQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL---RELVNCRWAEEVTQQLDTL 89 (100)
T ss_dssp HHHHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG---GGCEECTTHHHHHHHHHHH
T ss_pred ccccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH---HHhHhhHHHHHHHHHHHHH
Confidence 4566778889999999999999999 89999999999999998755799999999976 3677788888888888877
Q ss_pred CC
Q 019484 217 NT 218 (340)
Q Consensus 217 ~~ 218 (340)
+.
T Consensus 90 ~~ 91 (100)
T 3lrq_A 90 QL 91 (100)
T ss_dssp CC
T ss_pred HH
Confidence 75
No 27
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.45 E-value=1.3e-14 Score=105.35 Aligned_cols=54 Identities=26% Similarity=0.653 Sum_probs=47.1
Q ss_pred CCcccccccCC--CCCCceeeeCCCCCCcccCCCCCCCCCC--C-CCCCccCCCCCCCCc
Q 019484 11 GDGMCMRCKET--PVEEEQLCCKTCATPWHVACLVRPPESL--A-STLLWECPDCTGDAA 65 (340)
Q Consensus 11 ~~~~c~~c~~~--~~~~~~l~c~~c~~~~h~~cl~~p~~~~--~-p~~~w~c~~c~~~~~ 65 (340)
++..|.+|+.+ .++..||+||.|+.+||++||. |||+. + |+|+|||+.|.....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~-p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHT-PHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSS-SCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCC-CcccccccCCCCCEECCCCcCccc
Confidence 57889999987 4568999999999999999999 99987 4 999999999975443
No 28
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.45 E-value=3.2e-14 Score=111.37 Aligned_cols=76 Identities=18% Similarity=0.503 Sum_probs=67.3
Q ss_pred hhhhhcCCCcccccccCCCCCCccc-CCCCcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHHhhC
Q 019484 139 ELSDIFGGSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAKRSN 217 (340)
Q Consensus 139 ~~~~~~~~~~~C~iC~~~~~~pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~~~~ 217 (340)
..++.+.+.+.|+||++.+.+|+++ +|||+||..||..|+.. ...||.||..+.. ..+..|..|.++++.+++.+
T Consensus 14 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~---~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 14 AVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTE---PDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp GGGHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG---GGCEECHHHHHHHHHHHHHH
T ss_pred hHHHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCCh---hhCCcCHHHHHHHHHHHHHH
Confidence 4566677789999999999999998 89999999999999986 5799999999886 37889999999999998876
Q ss_pred C
Q 019484 218 T 218 (340)
Q Consensus 218 ~ 218 (340)
.
T Consensus 90 ~ 90 (99)
T 2y43_A 90 N 90 (99)
T ss_dssp H
T ss_pred H
Confidence 5
No 29
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.44 E-value=9.1e-14 Score=112.23 Aligned_cols=76 Identities=26% Similarity=0.499 Sum_probs=67.1
Q ss_pred chhhhhhcCCCcccccccCCCCCCccc-CCCCcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHHh
Q 019484 137 ENELSDIFGGSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAKR 215 (340)
Q Consensus 137 ~~~~~~~~~~~~~C~iC~~~~~~pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~~ 215 (340)
....+..+.+.+.|+||+++|.+|+++ +|||+||..||..|+. ..||.||..+.. ..+..|..|.++++.+++
T Consensus 12 ~~~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~---~~~~~n~~l~~l~~~~~~ 85 (117)
T 1jm7_B 12 SRAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWI---QDLKINRQLDSMIQLCSK 85 (117)
T ss_dssp HHHHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSC---SSCCCCHHHHHHHHHHHH
T ss_pred hHHHHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCcc---ccccccHHHHHHHHHHHH
Confidence 346677888899999999999999999 9999999999999986 689999999865 478999999999998877
Q ss_pred hCC
Q 019484 216 SNT 218 (340)
Q Consensus 216 ~~~ 218 (340)
.+.
T Consensus 86 ~~~ 88 (117)
T 1jm7_B 86 LRN 88 (117)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 30
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.41 E-value=1e-13 Score=116.93 Aligned_cols=75 Identities=25% Similarity=0.406 Sum_probs=65.6
Q ss_pred hhhhhcCCCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHHh
Q 019484 139 ELSDIFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAKR 215 (340)
Q Consensus 139 ~~~~~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~~ 215 (340)
..+..+.+.+.|+||+++|.+|++++|||+||..||..|+..+...||+||..+... ..+..|..|.++++.+..
T Consensus 70 ~~~~~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~--~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 70 NFLKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN--YIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp GHHHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT--CCCCBCHHHHHHHHHHST
T ss_pred hHHHhCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC--CCCCCCHHHHHHHHHHhh
Confidence 355667778999999999999999999999999999999987667899999999874 278999999999988764
No 31
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=99.41 E-value=1.4e-13 Score=110.43 Aligned_cols=58 Identities=22% Similarity=0.667 Sum_probs=52.2
Q ss_pred CCcCCCCCCcccccccCC-CCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCC
Q 019484 4 VIQLPCNGDGMCMRCKET-PVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTG 62 (340)
Q Consensus 4 ~~~~~~~~~~~c~~c~~~-~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~ 62 (340)
..+|-|..-.+|.+|+.. .+++++|+||.|+++||++||. |||+.+|+|+|||+.|..
T Consensus 53 ~~~W~C~~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~-p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 53 ALRWQCIECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCD-PPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TSCCCCTTTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCS-SCCSSCCSSCCCCTTTSC
T ss_pred ccccccccCCccccccCcCCCccceEEcCCCCCeeecccCC-CCCCCCCCCCeECCCCCC
Confidence 356888888899999985 5667899999999999999999 999999999999999974
No 32
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.41 E-value=2.8e-14 Score=104.67 Aligned_cols=52 Identities=23% Similarity=0.544 Sum_probs=46.0
Q ss_pred CCCCcccccccCCC--CCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCC
Q 019484 9 CNGDGMCMRCKETP--VEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGD 63 (340)
Q Consensus 9 ~~~~~~c~~c~~~~--~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~ 63 (340)
=+++..|.+|+++. ++++||+||.|+.+||++||. ||+ +|+|+|||+.|...
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~-~~~--vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYG-VPY--IPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHT-CSS--CCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCC-CCc--CCCCCcCCccCcCc
Confidence 35688999999875 778999999999999999999 874 99999999999753
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.40 E-value=9e-15 Score=109.45 Aligned_cols=63 Identities=24% Similarity=0.557 Sum_probs=51.6
Q ss_pred hhhcCCCcccccccCCCCCCcccCCCCcccchhhhhhhccC------CCCCCCCCcccCCCCCCCCCccHHH
Q 019484 141 SDIFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLG------KKTCAKCRCIIPSKMAGQPRINSTL 206 (340)
Q Consensus 141 ~~~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~------~~~CP~Cr~~~~~~~~~~~~~n~~l 206 (340)
++.+.+.+.|+||++.+.+|++++|||+||..||.+|+... ...||.||..+... .+..|..|
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~---~l~~n~~l 74 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE---HLQANQHL 74 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS---GGGTCSSS
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh---hCCcCHHH
Confidence 34567789999999999999999999999999999998752 57999999998753 44444433
No 34
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.38 E-value=1.6e-13 Score=109.87 Aligned_cols=59 Identities=27% Similarity=0.630 Sum_probs=53.9
Q ss_pred CcCCCCCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCC
Q 019484 5 IQLPCNGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDA 64 (340)
Q Consensus 5 ~~~~~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~ 64 (340)
..|-|..-..|.+|++..+++.+|+||.|+++||++||. |||+.+|+|+||||.|..-.
T Consensus 47 ~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~-ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 47 AGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQ-PVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp TTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEEGGGSS-SCCSSCCSSCCCCHHHHCCS
T ss_pred cCccCCcCCcccccCccCCCCCeeECCCCCcHHhHHhcC-CccccCCCCCcCCcCCcCcC
Confidence 457788888999999999999999999999999999999 99999999999999997544
No 35
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=2.9e-13 Score=105.07 Aligned_cols=72 Identities=19% Similarity=0.373 Sum_probs=62.0
Q ss_pred cCCCcccccccCCCCCCcccC-CCCcccchhhhhhhccC-----CCCCCC--CCcc-cCCCCCCCCCccHHHHHHHHHHH
Q 019484 144 FGGSLNCSFCMQLPERPVTTP-CGHNFCLKCFQKWIGLG-----KKTCAK--CRCI-IPSKMAGQPRINSTLVAAIRMAK 214 (340)
Q Consensus 144 ~~~~~~C~iC~~~~~~pv~l~-CgH~FC~~Ci~~~~~~~-----~~~CP~--Cr~~-~~~~~~~~~~~n~~l~~~i~~~~ 214 (340)
..+++.||||+++|.+||+++ |||+||..||..|+... ...||+ |+.. +.. ..+..|..|.++|+.++
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~---~~L~pn~~L~~~I~~~~ 80 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK---SDLIQDEALRRAIENHN 80 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG---GGEEECHHHHHHHHHHH
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH---hhCcCCHHHHHHHHHHH
Confidence 346899999999999999995 99999999999999752 469999 9876 654 47899999999999998
Q ss_pred hhCC
Q 019484 215 RSNT 218 (340)
Q Consensus 215 ~~~~ 218 (340)
+...
T Consensus 81 ~~~~ 84 (94)
T 2yu4_A 81 KKRH 84 (94)
T ss_dssp TTCC
T ss_pred HHhc
Confidence 7665
No 36
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=99.36 E-value=9.7e-14 Score=106.22 Aligned_cols=55 Identities=22% Similarity=0.484 Sum_probs=47.9
Q ss_pred CCCCCCcccccccCCC--CCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCC
Q 019484 7 LPCNGDGMCMRCKETP--VEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDA 64 (340)
Q Consensus 7 ~~~~~~~~c~~c~~~~--~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~ 64 (340)
..-+++..|.+|+.+. ++++||+||.|+.+||++||. ||+ +|+|+|||+.|....
T Consensus 20 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~-p~~--vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 20 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYG-VPY--IPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHT-CSS--CCSSCCCCHHHHHHT
T ss_pred CcCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCC-CCc--cCCCceECccccCcc
Confidence 3356789999999875 777999999999999999999 885 899999999997543
No 37
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=3.9e-13 Score=101.20 Aligned_cols=64 Identities=20% Similarity=0.356 Sum_probs=52.0
Q ss_pred cCCCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHHh
Q 019484 144 FGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAKR 215 (340)
Q Consensus 144 ~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~~ 215 (340)
..+.+.|+||++.+.+|++++|||+||..||.+|+.. ...||+||..+.. .+..|.. +++.+++
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~----~~~~~~~---l~~~~~~ 75 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTGG----IFNPAKE---LMAKLQK 75 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCCS----CCEECHH---HHHHHSS
T ss_pred CCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCccccc----cCCcHHH---HHHHHHh
Confidence 3457899999999999999999999999999999976 6789999999873 5566644 4444443
No 38
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.36 E-value=1.1e-13 Score=111.29 Aligned_cols=71 Identities=28% Similarity=0.537 Sum_probs=59.4
Q ss_pred cCCCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCCC----CCCCCCccHHHHHHHHHHH
Q 019484 144 FGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSK----MAGQPRINSTLVAAIRMAK 214 (340)
Q Consensus 144 ~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~----~~~~~~~n~~l~~~i~~~~ 214 (340)
+.+++.|+||++++.+|++++|||+||..||.+|+..+...||.||..+... ....+.+|..|.++++.+.
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 3457899999999999999999999999999999987678999999988631 1236778888888887764
No 39
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.36 E-value=5.8e-14 Score=106.19 Aligned_cols=63 Identities=27% Similarity=0.661 Sum_probs=52.0
Q ss_pred hhhcCCCcccccccCCCCCCcccCCCCcccchhhhhhhcc-----CCCCCCCCCcccCCCCCCCCCccHHH
Q 019484 141 SDIFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGL-----GKKTCAKCRCIIPSKMAGQPRINSTL 206 (340)
Q Consensus 141 ~~~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~~~~~~~~n~~l 206 (340)
.+.+.+.+.|+||++.+.+|++++|||+||..||..|+.. +...||.||..+... .+..|..|
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~---~~~~n~~l 80 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG---NLKPNLHV 80 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT---CCEECSCC
T ss_pred HHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH---hCCcCHHH
Confidence 4456778999999999999999999999999999999875 267999999998763 45555444
No 40
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.1e-13 Score=97.07 Aligned_cols=54 Identities=24% Similarity=0.591 Sum_probs=48.2
Q ss_pred hhhcCCCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 141 SDIFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 141 ~~~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
...+.+.+.|+||++.+.+|+.++|||+||..||.+|+......||+||..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred hhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 345677899999999999999999999999999999996556799999998875
No 41
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.35 E-value=3.6e-13 Score=107.11 Aligned_cols=75 Identities=20% Similarity=0.344 Sum_probs=62.9
Q ss_pred hhhhcCCCcccccccCCCCCCccc-CCCCcccchhhhhhhccCCCCCCCCCcccCCC-CCCCCCccHHHHHHHHHHHh
Q 019484 140 LSDIFGGSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSK-MAGQPRINSTLVAAIRMAKR 215 (340)
Q Consensus 140 ~~~~~~~~~~C~iC~~~~~~pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~-~~~~~~~n~~l~~~i~~~~~ 215 (340)
.++.+.+.+.|+||++.+.+|+++ +|||+||..||..|+.. ...||.||..+... ....+..|..|.++++.+..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 8 KITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp EHHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred chhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 355677899999999999999998 99999999999999986 58999999998752 12256789999999887643
No 42
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=9.8e-14 Score=104.90 Aligned_cols=63 Identities=25% Similarity=0.626 Sum_probs=51.9
Q ss_pred hhhcCCCcccccccCCCCCCcccCCCCcccchhhhhhhcc-----CCCCCCCCCcccCCCCCCCCCccHHH
Q 019484 141 SDIFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGL-----GKKTCAKCRCIIPSKMAGQPRINSTL 206 (340)
Q Consensus 141 ~~~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~~~~~~~~n~~l 206 (340)
...+.+.+.|+||++.+.+|+.++|||+||..|+..|+.. +...||.||..+... .+..|..|
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~---~~~~n~~l 80 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE---NIRPNRHV 80 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS---SCCCSCCC
T ss_pred HHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH---hcCccHHH
Confidence 4456778999999999999999999999999999999864 367999999998863 44555443
No 43
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.35 E-value=2.9e-13 Score=112.51 Aligned_cols=67 Identities=31% Similarity=0.620 Sum_probs=54.2
Q ss_pred hhcCCCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHH
Q 019484 142 DIFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAK 214 (340)
Q Consensus 142 ~~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~ 214 (340)
+.+++++.|+||++.|.+|++++|||+||..||..|+.. ...||+||..+... ..+..+..+++.+.
T Consensus 48 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~-----~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 48 DVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK-----TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHHHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE-----EECHHHHHHHHHHH
T ss_pred HhccccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC-----CCccchhHHHHHHH
Confidence 345567899999999999999999999999999999986 67899999998742 34555666665554
No 44
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.34 E-value=2.1e-13 Score=108.80 Aligned_cols=73 Identities=22% Similarity=0.526 Sum_probs=55.7
Q ss_pred hhhhhcCCCcccccccCCCCCCcccCCCCcccchhhhhhhccC--CCCCCCCCcccCCCCCCCCCccHHHHHHHHHHH
Q 019484 139 ELSDIFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLG--KKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAK 214 (340)
Q Consensus 139 ~~~~~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~ 214 (340)
..+..+.+.+.|+||++.+.+|++++|||+||..||..|+... ...||.||..+... .+..|..+.++++.++
T Consensus 13 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~---~~~~~~~l~~~~~~~~ 87 (112)
T 1jm7_A 13 NVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR---SLQESTRFSQLVEELL 87 (112)
T ss_dssp HHHHHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT---TCBCCCSSSHHHHHHH
T ss_pred HHHHhccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh---hcCccHHHHHHHHHHH
Confidence 3455666788999999999999999999999999999998753 35899999998763 4444444444444443
No 45
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=6.4e-13 Score=97.76 Aligned_cols=54 Identities=22% Similarity=0.525 Sum_probs=47.6
Q ss_pred hhhcCCCcccccccCCCCCCccc-CCCCcccchhhhhhhccCCCCCCCCCcccCCC
Q 019484 141 SDIFGGSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSK 195 (340)
Q Consensus 141 ~~~~~~~~~C~iC~~~~~~pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 195 (340)
++.+++.+.|+||++.+.+|+++ +|||+||..||..|+.. ...||+||..+...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQT 63 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSS
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCcc
Confidence 34566788999999999999997 99999999999999976 67999999998763
No 46
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1e-12 Score=96.61 Aligned_cols=55 Identities=31% Similarity=0.781 Sum_probs=48.2
Q ss_pred hhhhcCCCcccccccCCCCCCcccCCCCcccchhhhhhhcc--CCCCCCCCCcccCC
Q 019484 140 LSDIFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGL--GKKTCAKCRCIIPS 194 (340)
Q Consensus 140 ~~~~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~--~~~~CP~Cr~~~~~ 194 (340)
..+.+.+.+.|+||++.+.+|++++|||+||..||..|+.. ....||+||..+..
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 13 FVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HHHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 34466778999999999999999999999999999999972 46799999999875
No 47
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.31 E-value=9.2e-13 Score=114.77 Aligned_cols=51 Identities=27% Similarity=0.728 Sum_probs=46.3
Q ss_pred CCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 11 GDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
++..|.+|+++ +++|+||+|+++||++||. |||+.+|+|+|+||.|.....
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~-p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHV-PTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSS-SCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccC-CCCCCCCCCCEECccccCccc
Confidence 57889999977 4699999999999999999 999999999999999986554
No 48
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.31 E-value=8.2e-13 Score=117.21 Aligned_cols=51 Identities=25% Similarity=0.686 Sum_probs=46.2
Q ss_pred CCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 11 GDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
++..|.+|++++ ++|+||+|+++||++||. |||+.+|+|+|+||.|.....
T Consensus 6 ~~~~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~-p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQNGG---DLLCCEKCPKVFHLTCHV-PTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCCCE---EEEECSSSSCEECTTTSS-SCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCC---ceEEcCCCCCccCCccCC-CCCCCCCCCCEEeCceeCccc
Confidence 467899999774 699999999999999999 999999999999999987554
No 49
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.31 E-value=4.6e-13 Score=114.53 Aligned_cols=75 Identities=28% Similarity=0.529 Sum_probs=61.7
Q ss_pred hhcCCCcccccccCCCCCCccc-CCCCcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHHhhCC
Q 019484 142 DIFGGSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAKRSNT 218 (340)
Q Consensus 142 ~~~~~~~~C~iC~~~~~~pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~~~~~ 218 (340)
..+.+.+.|+||++.|.+|+++ +|||+||..||.+|+..+...||+||..+... ..+..|..|.+++..++....
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~--~~l~~~~~l~~~i~~~~~~~~ 124 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK--RSLRPDPNFDALISKIYPSRD 124 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG--GGEEECHHHHHHHHHHC----
T ss_pred hhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc--ccCCcCHHHHHHHHHHHcchh
Confidence 3455678999999999999998 99999999999999987678999999998643 368899999999998866543
No 50
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.31 E-value=1.1e-12 Score=114.73 Aligned_cols=51 Identities=20% Similarity=0.565 Sum_probs=46.2
Q ss_pred CCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 11 GDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
++..|.+|+.++ ++|+||+|+++||++||. |||+.+|.|+|+|+.|...+.
T Consensus 1 s~~~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~-p~l~~~p~g~W~C~~C~~~~~ 51 (189)
T 2ro1_A 1 SATICRVCQKPG---DLVMCNQCEFCFHLDCHL-PALQDVPGEEWSCSLCHVLPD 51 (189)
T ss_dssp CCCCBTTTCCCS---SCCCCTTTCCBCCSTTST-TCCSSCCCTTCCTTTTSCSCC
T ss_pred CCCcCccCCCCC---ceeECCCCCchhccccCC-CCcccCCCCCCCCcCccCCCC
Confidence 367899999874 799999999999999999 999999999999999987654
No 51
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.30 E-value=9.2e-13 Score=97.52 Aligned_cols=53 Identities=26% Similarity=0.599 Sum_probs=45.9
Q ss_pred hhcCCCcccccccCCCCCCcccC-CCCcccchhhhhhhccC-CCCCCCCCcccCC
Q 019484 142 DIFGGSLNCSFCMQLPERPVTTP-CGHNFCLKCFQKWIGLG-KKTCAKCRCIIPS 194 (340)
Q Consensus 142 ~~~~~~~~C~iC~~~~~~pv~l~-CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 194 (340)
+.+.+.+.|+||++.|.+|++++ |||+||..||..|+... ...||+||..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 35567899999999999999999 99999999999999752 3689999997654
No 52
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.30 E-value=1.3e-12 Score=120.22 Aligned_cols=72 Identities=17% Similarity=0.114 Sum_probs=63.8
Q ss_pred cCCCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHHhhCC
Q 019484 144 FGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAKRSNT 218 (340)
Q Consensus 144 ~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~~~~~ 218 (340)
+...+.||||+++|.+||+++|||+||..||.+|+..+...||.|+.++.. ..+.+|..|.++|+.+...+.
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~---~~l~~n~~l~~~i~~~~~~~~ 276 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ---EQLIPNLAMKEVIDAFISENG 276 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG---GGCEECHHHHHHHHHHHTTCS
T ss_pred CCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch---hcCcccHHHHHHHHHHHHHCC
Confidence 346899999999999999999999999999999998655569999999976 378999999999999987654
No 53
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.29 E-value=1.7e-12 Score=112.04 Aligned_cols=73 Identities=16% Similarity=0.106 Sum_probs=64.8
Q ss_pred hcCCCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHHhhCC
Q 019484 143 IFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAKRSNT 218 (340)
Q Consensus 143 ~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~~~~~ 218 (340)
.+.+.+.||||+++|.+||+++|||+||..||..|+.....+||.|+.++.. ..+.+|..|.++|+.+...+.
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~---~~L~pN~~Lk~~Ie~~~~~~~ 174 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ---DQLIPNLAMKEVIDAFIQENG 174 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG---GGCEECHHHHHHHHHHHHHCT
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh---hhCcchHHHHHHHHHHHHHCC
Confidence 4567899999999999999999999999999999998643479999999986 378999999999999987664
No 54
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=5.2e-13 Score=101.76 Aligned_cols=62 Identities=27% Similarity=0.549 Sum_probs=50.6
Q ss_pred hhcCCCcccccccCCCCC----CcccCCCCcccchhhhhhhccC--CCCCCCCCcccCCCCCCCCCcc
Q 019484 142 DIFGGSLNCSFCMQLPER----PVTTPCGHNFCLKCFQKWIGLG--KKTCAKCRCIIPSKMAGQPRIN 203 (340)
Q Consensus 142 ~~~~~~~~C~iC~~~~~~----pv~l~CgH~FC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~~~~~~~n 203 (340)
+.+.+.+.|+||++.|.. |+.++|||+||..||.+|+... ...||.||..+....+..+..|
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~~n 77 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLTDN 77 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSEEC
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHHHH
Confidence 355678899999999998 9999999999999999998753 4799999998876443444444
No 55
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.4e-12 Score=93.30 Aligned_cols=50 Identities=34% Similarity=0.852 Sum_probs=43.6
Q ss_pred hhhhhcCCCcccccccCCCCCCcccCCCCcccchhhhhhhcc--CCCCCCCC
Q 019484 139 ELSDIFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGL--GKKTCAKC 188 (340)
Q Consensus 139 ~~~~~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~--~~~~CP~C 188 (340)
..++.+.+.+.|+||++.+.+|++++|||+||..||.+|+.. ....||+|
T Consensus 12 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 12 QFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 344567788999999999999999999999999999999973 45689998
No 56
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.27 E-value=8.4e-13 Score=106.68 Aligned_cols=72 Identities=24% Similarity=0.411 Sum_probs=60.3
Q ss_pred hhhhcCCCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHH
Q 019484 140 LSDIFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAK 214 (340)
Q Consensus 140 ~~~~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~ 214 (340)
++..+.+.+.|+||++.+.+|++++|||+||..||..|+......||.||..+... .+..+..+.+++..++
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~---~~~~~~~l~~~i~~l~ 82 (118)
T 3hct_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN---QLFPDNFAKREILSLM 82 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG---GCEECHHHHHHHHTSE
T ss_pred hccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH---hcccCHHHHHHHccce
Confidence 45577788999999999999999999999999999999986555999999998763 5667777777766544
No 57
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=3.3e-12 Score=89.53 Aligned_cols=48 Identities=31% Similarity=0.822 Sum_probs=42.0
Q ss_pred hhhcCCCcccccccCCCCCCcccCCCCcccchhhhhhhcc--CCCCCCCC
Q 019484 141 SDIFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGL--GKKTCAKC 188 (340)
Q Consensus 141 ~~~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~--~~~~CP~C 188 (340)
.+.+.+.+.|+||++.+.+|++++|||+||..||.+|+.. ....||+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456678999999999999999999999999999999653 46799998
No 58
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.24 E-value=5.5e-12 Score=100.86 Aligned_cols=50 Identities=26% Similarity=0.650 Sum_probs=46.6
Q ss_pred CCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCC
Q 019484 11 GDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCT 61 (340)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~ 61 (340)
++..|.+|+...+.++||+|+.|++.||++||. |++..++.+.|+|+.|.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~-~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLD-IAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTT-CCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhC-CccccccccCccCCcCC
Confidence 578999999998778889999999999999999 99988999999999996
No 59
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1.8e-12 Score=95.03 Aligned_cols=48 Identities=40% Similarity=0.791 Sum_probs=44.0
Q ss_pred CCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 146 GSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
+.+.|+||++.+.+|+.++|||.||..||.+|+.. ...||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 46789999999999999999999999999999876 5799999998875
No 60
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.21 E-value=2.7e-12 Score=103.24 Aligned_cols=71 Identities=21% Similarity=0.454 Sum_probs=55.7
Q ss_pred hhhcCCCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHH
Q 019484 141 SDIFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMA 213 (340)
Q Consensus 141 ~~~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~ 213 (340)
...+.+.+.|+||++.+.+|++++|||+||..||.+|+......||.||..+.... ....+..+.+++..+
T Consensus 17 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~--~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 17 PAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD--LESPVKSFLNILNSL 87 (116)
T ss_dssp CHHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG--CBCCCHHHHHHHHHC
T ss_pred HHhccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh--ccccHHHHHHHHHHh
Confidence 34556688999999999999999999999999999999865678999999987642 123455555555444
No 61
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=99.17 E-value=4.6e-12 Score=94.13 Aligned_cols=50 Identities=20% Similarity=0.569 Sum_probs=45.6
Q ss_pred CcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCC
Q 019484 12 DGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTG 62 (340)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~ 62 (340)
...|.+|++..+.+.||+||.|+..||++||. |++..+|.++|+||.|..
T Consensus 18 ~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~-~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 18 IWICPGCNKPDDGSPMIGCDDCDDWYHWPCVG-IMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp EECBTTTTBCCSSCCEEECSSSSSEEEHHHHT-CSSCCCSSSCCCCTTTHH
T ss_pred CcCCCCCCCCCCCCCEEEcCCCCcccccccCC-CCccCCCCCCEEChhccC
Confidence 34699999998878899999999999999999 999999999999999964
No 62
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=7.1e-12 Score=90.18 Aligned_cols=50 Identities=22% Similarity=0.585 Sum_probs=43.4
Q ss_pred CCcccccccC-CCCCCc----ccCCCCcccchhhhhhhccCCCCCCCCCcccCCC
Q 019484 146 GSLNCSFCMQ-LPERPV----TTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSK 195 (340)
Q Consensus 146 ~~~~C~iC~~-~~~~pv----~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 195 (340)
+++.|+||++ .+.+|+ .++|||+||..||.+|+.++...||.||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 4678999999 898884 6799999999999999776677899999998763
No 63
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=4.6e-12 Score=91.85 Aligned_cols=51 Identities=33% Similarity=0.730 Sum_probs=44.6
Q ss_pred hcCCCcccccccCCCCCC-------cccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 143 IFGGSLNCSFCMQLPERP-------VTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 143 ~~~~~~~C~iC~~~~~~p-------v~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
.+.+.+.|+||++.+.+| +.++|||.||..||.+|+.. ...||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 345678899999999987 78899999999999999986 6799999998864
No 64
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.16 E-value=3e-11 Score=90.34 Aligned_cols=53 Identities=25% Similarity=0.551 Sum_probs=44.1
Q ss_pred hcCCCcccccccCCCC--CCcccC--CCCcccchhhhhhhccCCCCCCCCCcccCCC
Q 019484 143 IFGGSLNCSFCMQLPE--RPVTTP--CGHNFCLKCFQKWIGLGKKTCAKCRCIIPSK 195 (340)
Q Consensus 143 ~~~~~~~C~iC~~~~~--~pv~l~--CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 195 (340)
.+++++.|+||++.+. +++.++ |||+||..|+.+++......||.||..+...
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 4567899999999885 445555 9999999999998876678999999999864
No 65
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.15 E-value=4.2e-12 Score=105.84 Aligned_cols=75 Identities=20% Similarity=0.425 Sum_probs=57.2
Q ss_pred hhhhhcCCCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCCCC------CCCCCccHHHHHHHHH
Q 019484 139 ELSDIFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKM------AGQPRINSTLVAAIRM 212 (340)
Q Consensus 139 ~~~~~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~------~~~~~~n~~l~~~i~~ 212 (340)
...+.+++.+.|+||+++|.+|++++|||+||..||.+|+..+...||.||..+.... ...+..+..+.+.|..
T Consensus 23 ~~~~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~ 102 (141)
T 3knv_A 23 LLGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES 102 (141)
T ss_dssp GTGGGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred hhhccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence 3446788899999999999999999999999999999999876679999999764210 0123355556555544
Q ss_pred H
Q 019484 213 A 213 (340)
Q Consensus 213 ~ 213 (340)
+
T Consensus 103 L 103 (141)
T 3knv_A 103 L 103 (141)
T ss_dssp S
T ss_pred c
Confidence 3
No 66
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.13 E-value=1.2e-11 Score=90.23 Aligned_cols=50 Identities=36% Similarity=0.807 Sum_probs=44.3
Q ss_pred CCCcccccccCCCCCC-------cccCCCCcccchhhhhhhccCCCCCCCCCcccCCC
Q 019484 145 GGSLNCSFCMQLPERP-------VTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSK 195 (340)
Q Consensus 145 ~~~~~C~iC~~~~~~p-------v~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 195 (340)
.+.+.|+||++.+.+| +.++|||+||..||.+|+.. ...||+||..+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChh
Confidence 3578899999999988 78899999999999999986 57999999998764
No 67
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.13 E-value=1.1e-11 Score=106.45 Aligned_cols=73 Identities=25% Similarity=0.422 Sum_probs=60.1
Q ss_pred hhhhhcCCCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHH
Q 019484 139 ELSDIFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAK 214 (340)
Q Consensus 139 ~~~~~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~ 214 (340)
+++..+.+.+.|+||+++|.+|++++|||+||..||.+|+..+...||.||..+... .+..+..+.+++..++
T Consensus 10 ~~~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~---~~~~~~~~~~~i~~l~ 82 (170)
T 3hcs_A 10 EFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN---QLFPDNFAKREILSLM 82 (170)
T ss_dssp EESSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG---GCEECHHHHHHHHTSE
T ss_pred hhccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh---hhhhhHHHHHHHhhcc
Confidence 355678889999999999999999999999999999999976556999999998763 4556777766665443
No 68
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.12 E-value=2.9e-11 Score=84.54 Aligned_cols=45 Identities=27% Similarity=0.626 Sum_probs=40.2
Q ss_pred CCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 146 GSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
+.+.|+||++.+.+|++++|||+||..|+..| ...||+||..+..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 47889999999999999999999999999873 4689999998875
No 69
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.12 E-value=5.6e-11 Score=88.48 Aligned_cols=51 Identities=25% Similarity=0.656 Sum_probs=43.2
Q ss_pred cCCCcccccccCCCCCC---cccCCCCcccchhhhhhhccCCCCCCCCCcccCCC
Q 019484 144 FGGSLNCSFCMQLPERP---VTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSK 195 (340)
Q Consensus 144 ~~~~~~C~iC~~~~~~p---v~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 195 (340)
+.+.+.|+||++.|..+ +.++|||.||..||.+|+.. ...||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCS
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCc
Confidence 34577899999999866 34699999999999999976 57999999998764
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.11 E-value=2.1e-11 Score=110.26 Aligned_cols=72 Identities=17% Similarity=0.290 Sum_probs=62.6
Q ss_pred hcCCCcccccccCCCCCCccc-CCCCcccchhhhhhhcc-CCCCCCC--CCcccCCCCCCCCCccHHHHHHHHHHHhhC
Q 019484 143 IFGGSLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGL-GKKTCAK--CRCIIPSKMAGQPRINSTLVAAIRMAKRSN 217 (340)
Q Consensus 143 ~~~~~~~C~iC~~~~~~pv~l-~CgH~FC~~Ci~~~~~~-~~~~CP~--Cr~~~~~~~~~~~~~n~~l~~~i~~~~~~~ 217 (340)
....++.||||+++|.+||++ .|||+||+.||..|+.. +...||+ |+..+.. ..+.+|..|.++++.++...
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~---~dL~pN~~L~~lve~~k~r~ 252 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM---RDFVRDPIMELRCKIAKMKE 252 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG---GGEEECHHHHHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch---hhCCcCHHHHHHHHHHHHHH
Confidence 456789999999999999985 99999999999999875 3578999 9998876 48899999999998876643
No 71
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.10 E-value=5.5e-11 Score=82.37 Aligned_cols=48 Identities=31% Similarity=0.845 Sum_probs=41.7
Q ss_pred CCCcccccccCCCCC---CcccC-CCCcccchhhhhhhccCCCCCCCCCcccC
Q 019484 145 GGSLNCSFCMQLPER---PVTTP-CGHNFCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 145 ~~~~~C~iC~~~~~~---pv~l~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
++...|+||++.+.. ++.++ |||.||..||.+|+.. ...||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 456789999999987 67776 9999999999999986 679999998764
No 72
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=1.8e-11 Score=89.23 Aligned_cols=51 Identities=29% Similarity=0.812 Sum_probs=45.2
Q ss_pred hhcCCCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 142 DIFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 142 ~~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
..+.+.+.|+||++.+.. +.++|||.||..||.+|+.. ...||+||..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTC
T ss_pred hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccC
Confidence 345668899999999999 88999999999999999885 7899999998875
No 73
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=99.08 E-value=1.2e-10 Score=90.85 Aligned_cols=49 Identities=20% Similarity=0.515 Sum_probs=43.6
Q ss_pred cccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCC
Q 019484 13 GMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDA 64 (340)
Q Consensus 13 ~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~ 64 (340)
..| +|+...+...||+||.|+..||+.|+. |++..+|+ .|+||.|....
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~-~~~~~~p~-~w~C~~C~~~~ 77 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMG-IDRQHIPD-TYLCERCQPRN 77 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTT-CCTTSCCS-SBCCTTTSSSC
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCC-CCccCCCC-CEECCCCcCCC
Confidence 457 899988888999999999999999999 99999985 89999997543
No 74
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=6.8e-11 Score=87.13 Aligned_cols=51 Identities=25% Similarity=0.611 Sum_probs=43.6
Q ss_pred hcCCCcccccccCCCCCCccc---CCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 143 IFGGSLNCSFCMQLPERPVTT---PCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 143 ~~~~~~~C~iC~~~~~~pv~l---~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
.+.+...|+||++.+..+..+ +|+|.||..||.+|+.. ...||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 445677899999999877655 99999999999999986 4689999998865
No 75
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.05 E-value=7.6e-11 Score=81.59 Aligned_cols=46 Identities=22% Similarity=0.554 Sum_probs=40.3
Q ss_pred CcccccccCCCCC----CcccCCCCcccchhhhhhhccCCCCCCCCCcccC
Q 019484 147 SLNCSFCMQLPER----PVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 147 ~~~C~iC~~~~~~----pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
...|+||++.+.. ++.++|||.||..||.+|+.. ...||+||..+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 5679999999965 677899999999999999987 489999998774
No 76
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.04 E-value=4.1e-11 Score=88.65 Aligned_cols=52 Identities=27% Similarity=0.544 Sum_probs=46.2
Q ss_pred hhhhhhcCCCcccccccCCCCCCcccCCCCc-ccchhhhhhhccCCCCCCCCCcccCC
Q 019484 138 NELSDIFGGSLNCSFCMQLPERPVTTPCGHN-FCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 138 ~~~~~~~~~~~~C~iC~~~~~~pv~l~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
.+.+..+.+++.|+||++.+.+|+.++|||. ||..|+..| ..||+||..+..
T Consensus 15 ~~~~~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 15 EEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHHHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred HHHHhcCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 4556677788999999999999999999999 999999987 579999998875
No 77
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.04 E-value=3.1e-11 Score=86.10 Aligned_cols=49 Identities=35% Similarity=0.760 Sum_probs=43.3
Q ss_pred CCcccccccCCCCCC-------cccCCCCcccchhhhhhhccCCCCCCCCCcccCCC
Q 019484 146 GSLNCSFCMQLPERP-------VTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSK 195 (340)
Q Consensus 146 ~~~~C~iC~~~~~~p-------v~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 195 (340)
+.+.|+||++.+..| +.++|||.||..|+.+|+.. ...||.||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCcc
Confidence 467899999999887 77899999999999999987 67999999998753
No 78
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.04 E-value=9.2e-11 Score=84.88 Aligned_cols=48 Identities=31% Similarity=0.853 Sum_probs=42.1
Q ss_pred CCcccccccCCCCCC-cccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 146 GSLNCSFCMQLPERP-VTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 146 ~~~~C~iC~~~~~~p-v~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
....|+||++.+.+| +.++|||.||..|+.+|+.. ...||.||..+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 356799999999997 67899999999999999976 5799999998864
No 79
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.03 E-value=9.7e-11 Score=85.07 Aligned_cols=48 Identities=29% Similarity=0.702 Sum_probs=41.2
Q ss_pred CCcccccccCCCC---CCcccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 146 GSLNCSFCMQLPE---RPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 146 ~~~~C~iC~~~~~---~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
....|+||++.+. .++.++|||.||..||.+|+.. ...||+||..+..
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 4678999999885 4567899999999999999986 5689999999875
No 80
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=99.02 E-value=9.7e-11 Score=92.42 Aligned_cols=50 Identities=26% Similarity=0.660 Sum_probs=44.7
Q ss_pred CCCcccccccCCCCCCceeeeC--CCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 10 NGDGMCMRCKETPVEEEQLCCK--TCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 10 ~~~~~c~~c~~~~~~~~~l~c~--~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
+++..|.+|+++ .+||+|| .|+++||++||. |+.+|+|+|+||.|.+..-
T Consensus 13 ~~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~---L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 13 MHEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN---LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp SSCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT---CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCcCCCC---CcEeEECCCCCCcccccccCc---CCcCCCCCEECCCCCCCcC
Confidence 578899999965 5899999 899999999998 8899999999999987655
No 81
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=2.1e-10 Score=85.00 Aligned_cols=52 Identities=27% Similarity=0.550 Sum_probs=45.1
Q ss_pred hhhhhhcCCCcccccccCCCCCCcccCCCCc-ccchhhhhhhccCCCCCCCCCcccCC
Q 019484 138 NELSDIFGGSLNCSFCMQLPERPVTTPCGHN-FCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 138 ~~~~~~~~~~~~C~iC~~~~~~pv~l~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
.+.++.+++.+.|+||++.+.+|+.++|||. ||..|+.+ ...||+||..+..
T Consensus 16 ~~~~~~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 16 EEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHHHHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred HHHHHcCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 3556677778899999999999999999999 99999964 3589999999875
No 82
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=1.3e-10 Score=85.94 Aligned_cols=49 Identities=33% Similarity=0.687 Sum_probs=42.8
Q ss_pred CCCcccccccCCCCCC---cccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 145 GGSLNCSFCMQLPERP---VTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 145 ~~~~~C~iC~~~~~~p---v~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
.+...|+||++.+..+ +.++|+|.||..||.+|+.. ...||+||+.+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 3567899999999887 66899999999999999986 5789999998864
No 83
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.97 E-value=1.5e-10 Score=89.11 Aligned_cols=49 Identities=31% Similarity=0.843 Sum_probs=42.7
Q ss_pred CCCcccccccCCCCC---CcccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 145 GGSLNCSFCMQLPER---PVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 145 ~~~~~C~iC~~~~~~---pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
.++..|+||++.|.. ++.++|||.||..||..|+.. ...||+||..+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 346789999999887 777899999999999999986 6799999998864
No 84
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.91 E-value=1.9e-10 Score=93.91 Aligned_cols=50 Identities=36% Similarity=0.807 Sum_probs=44.6
Q ss_pred CCCcccccccCCCCCC-------cccCCCCcccchhhhhhhccCCCCCCCCCcccCCC
Q 019484 145 GGSLNCSFCMQLPERP-------VTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSK 195 (340)
Q Consensus 145 ~~~~~C~iC~~~~~~p-------v~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 195 (340)
.+.+.|+||++.|.+| +.++|||+||..||.+|+.. ...||+||..+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCccc
Confidence 3578999999999998 88999999999999999986 56999999998763
No 85
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.91 E-value=6.9e-10 Score=88.65 Aligned_cols=48 Identities=27% Similarity=0.573 Sum_probs=40.7
Q ss_pred CcccccccCCCCCCc------------------ccCCCCcccchhhhhhhc----cCCCCCCCCCcccCC
Q 019484 147 SLNCSFCMQLPERPV------------------TTPCGHNFCLKCFQKWIG----LGKKTCAKCRCIIPS 194 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv------------------~l~CgH~FC~~Ci~~~~~----~~~~~CP~Cr~~~~~ 194 (340)
+..|+||++.|..++ .++|+|.||..||..|+. .....||+||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 457999999997765 679999999999999995 236799999998875
No 86
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.87 E-value=7.2e-11 Score=96.42 Aligned_cols=47 Identities=34% Similarity=0.786 Sum_probs=42.2
Q ss_pred CcccccccCCCCCC-------cccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 147 SLNCSFCMQLPERP-------VTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 147 ~~~C~iC~~~~~~p-------v~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
.+.|+||++.+..+ +.++|||.||..||.+|+.. ...||+||..+..
T Consensus 72 ~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 72 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 125 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCCh
Confidence 56799999999877 77899999999999999986 5799999999875
No 87
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.86 E-value=2.2e-10 Score=85.79 Aligned_cols=52 Identities=23% Similarity=0.572 Sum_probs=45.0
Q ss_pred hhhhhhcCCCcccccccCCCCCCcccCCCCc-ccchhhhhhhccCCCCCCCCCcccCC
Q 019484 138 NELSDIFGGSLNCSFCMQLPERPVTTPCGHN-FCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 138 ~~~~~~~~~~~~C~iC~~~~~~pv~l~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
.+.++.+.+...|+||++.+.+++.++|||. ||..|+..+. .||+||..+..
T Consensus 9 ~~~~~~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 9 QEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HHHHHHHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred HHHHHcCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 3555667778899999999999999999999 9999998763 89999998875
No 88
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.84 E-value=2.6e-09 Score=78.12 Aligned_cols=55 Identities=24% Similarity=0.655 Sum_probs=44.5
Q ss_pred CcCCCCC--CcccccccCCCCCCceeeeCC--CC-CCcccCCCCCCCCCCCCCCCccCCCCCCCC
Q 019484 5 IQLPCNG--DGMCMRCKETPVEEEQLCCKT--CA-TPWHVACLVRPPESLASTLLWECPDCTGDA 64 (340)
Q Consensus 5 ~~~~~~~--~~~c~~c~~~~~~~~~l~c~~--c~-~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~ 64 (340)
.+++-|. ...| +|++... ..|+.||. |. ..||+.||. |+.+|.|.||||.|....
T Consensus 7 ~~~~~d~~~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg---l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 7 GDMPVDPNEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG---LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCCCTTSCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT---CSSCCSSCCCCTTTSSCS
T ss_pred cccccCCCCCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC---cCcCCCCCEECCCCCccc
Confidence 3455554 5678 8999765 58999999 76 699999999 678999999999997654
No 89
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.81 E-value=7e-10 Score=78.53 Aligned_cols=46 Identities=24% Similarity=0.587 Sum_probs=39.0
Q ss_pred CcccccccCCCCCCceeeeCCCC---CCcccCCCCCCCCCCCCCCCccCCCCCC
Q 019484 12 DGMCMRCKETPVEEEQLCCKTCA---TPWHVACLVRPPESLASTLLWECPDCTG 62 (340)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~c~---~~~h~~cl~~p~~~~~p~~~w~c~~c~~ 62 (340)
...| +|++.+. ..|+.||.|+ ..||+.||. |+.+|.|.||||.|..
T Consensus 10 ~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg---l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG---LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT---CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC---CCcCCCCCEECcCccC
Confidence 5567 8998765 6899999955 789999999 6789999999999964
No 90
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=2.5e-09 Score=80.38 Aligned_cols=47 Identities=21% Similarity=0.485 Sum_probs=39.2
Q ss_pred CcccccccCCCCC--------------Cccc-CCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 147 SLNCSFCMQLPER--------------PVTT-PCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 147 ~~~C~iC~~~~~~--------------pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
+..|+||++.|.. ++.+ +|+|.||..||.+|+.. ..+||+||+.+..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 5569999999876 4455 59999999999999987 5799999998764
No 91
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.79 E-value=1.3e-09 Score=87.11 Aligned_cols=51 Identities=29% Similarity=0.640 Sum_probs=41.2
Q ss_pred CCcccccccCC------CCCCceeeeCCCCCCcccCCCCC-CCC-CCCCCCCccCCCCC
Q 019484 11 GDGMCMRCKET------PVEEEQLCCKTCATPWHVACLVR-PPE-SLASTLLWECPDCT 61 (340)
Q Consensus 11 ~~~~c~~c~~~------~~~~~~l~c~~c~~~~h~~cl~~-p~~-~~~p~~~w~c~~c~ 61 (340)
...+|.+|... ...++||.|+.|++.||++||.. |++ ..++.+.|+|++|.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 45678899765 45679999999999999999961 333 35789999999996
No 92
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.74 E-value=1.1e-09 Score=90.60 Aligned_cols=50 Identities=22% Similarity=0.608 Sum_probs=44.1
Q ss_pred CcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCC-------CCCCCccCCCCCCCCc
Q 019484 12 DGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESL-------ASTLLWECPDCTGDAA 65 (340)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~-------~p~~~w~c~~c~~~~~ 65 (340)
+..|.+|+.+. ++|+||+|++.||+.||. |||.. .|.|+|+|+.|...+.
T Consensus 63 ~d~C~vC~~GG---~LlcCD~Cpr~Fh~~Cl~-p~l~~~~l~~i~~p~~~W~C~~C~~~pl 119 (142)
T 2lbm_A 63 DEQCRWCAEGG---NLICCDFCHNAFCKKCIL-RNLGRKELSTIMDENNQWYCYICHPEPL 119 (142)
T ss_dssp BCSCSSSCCCS---SEEECSSSCCEEEHHHHH-HHTCHHHHHHHHTSTTCCCCTTTCCCTT
T ss_pred CCeecccCCCC---cEEeCCCCCCeeeHhhcC-CCCChhhhhhcccCCCCCEeecccCccH
Confidence 67899999885 899999999999999999 99862 5999999999986553
No 93
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.72 E-value=4.1e-09 Score=100.93 Aligned_cols=53 Identities=26% Similarity=0.688 Sum_probs=46.2
Q ss_pred hhcCCCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 142 DIFGGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 142 ~~~~~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
+.......|+||++.+.+|+.++|||.||..|+..|+......||.||..+..
T Consensus 327 e~~~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 327 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp HTTTSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred hhcCCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 34455689999999999999999999999999999987446799999998875
No 94
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.72 E-value=2e-09 Score=75.83 Aligned_cols=47 Identities=26% Similarity=0.670 Sum_probs=39.7
Q ss_pred CCcccccccCCCCCCceeeeCC--CC-CCcccCCCCCCCCCCCCCCCccCCCCCC
Q 019484 11 GDGMCMRCKETPVEEEQLCCKT--CA-TPWHVACLVRPPESLASTLLWECPDCTG 62 (340)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~--c~-~~~h~~cl~~p~~~~~p~~~w~c~~c~~ 62 (340)
+...| +|++.+. ..|+.||. |. ..||+.|+. |+.+|.|.|+||.|..
T Consensus 8 e~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg---l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD---LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT---CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC---cccCCCCCEECcCccC
Confidence 35667 9998764 58999999 66 699999999 6788999999999964
No 95
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.70 E-value=1.9e-08 Score=76.82 Aligned_cols=54 Identities=24% Similarity=0.695 Sum_probs=43.3
Q ss_pred cCCCCC--CcccccccCCCCCCceeeeCC--CC-CCcccCCCCCCCCCCCCCCCccCCCCCCCC
Q 019484 6 QLPCNG--DGMCMRCKETPVEEEQLCCKT--CA-TPWHVACLVRPPESLASTLLWECPDCTGDA 64 (340)
Q Consensus 6 ~~~~~~--~~~c~~c~~~~~~~~~l~c~~--c~-~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~ 64 (340)
+.+.|. ...| +|++... ..|+.||. |. ..||+.|+. |+.+|.|.||||.|....
T Consensus 28 ~~~~d~~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg---l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 28 DMPVDPNEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG---LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp SCCCCSCCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT---CSSCCCSSCCCTTTCCCC
T ss_pred cCCcCCCCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC---cCcCCCCCEECcCccCcC
Confidence 445543 5678 9999765 58999999 65 689999999 677899999999997654
No 96
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.70 E-value=6.8e-09 Score=79.16 Aligned_cols=47 Identities=21% Similarity=0.533 Sum_probs=39.8
Q ss_pred CCCcccccccCCCCCCceeeeCCCC---CCcccCCCCCCCCCCCCCCCccCCC-CC
Q 019484 10 NGDGMCMRCKETPVEEEQLCCKTCA---TPWHVACLVRPPESLASTLLWECPD-CT 61 (340)
Q Consensus 10 ~~~~~c~~c~~~~~~~~~l~c~~c~---~~~h~~cl~~p~~~~~p~~~w~c~~-c~ 61 (340)
++...| +|+..+. .+|+.||.|+ ..||+.|+. |+.+|.|.||||. |.
T Consensus 24 ~~~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg---l~~~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCVG---LKQAPKGKWYCSKDCK 74 (90)
T ss_dssp CCSCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTSS---CSSCTTSCCCSSHHHH
T ss_pred CCCcEE-EeCCCCC-CCEEEecCCCCccccCcCccCC---CCcCCCCCccCChhhc
Confidence 445678 9998665 4799999977 899999998 6788999999999 86
No 97
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.69 E-value=3.8e-09 Score=75.70 Aligned_cols=47 Identities=28% Similarity=0.537 Sum_probs=41.5
Q ss_pred CcccccccCCCCCCccc--CCCCc-ccchhhhhhhccCCCCCCCCCcccCC
Q 019484 147 SLNCSFCMQLPERPVTT--PCGHN-FCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l--~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
+..|.||++.+.+++.+ +|||. ||..|+.+|+.. ...||+||..+..
T Consensus 8 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 57 (64)
T 2vje_A 8 IEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQM 57 (64)
T ss_dssp GSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCCE
T ss_pred cCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchhc
Confidence 45799999999999987 99999 899999998875 5789999998864
No 98
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.68 E-value=2.9e-09 Score=75.78 Aligned_cols=47 Identities=23% Similarity=0.646 Sum_probs=39.2
Q ss_pred CCcccccccCCCCCCceeeeCCCC---CCcccCCCCCCCCCCCCCCCccCCCCCC
Q 019484 11 GDGMCMRCKETPVEEEQLCCKTCA---TPWHVACLVRPPESLASTLLWECPDCTG 62 (340)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~c~---~~~h~~cl~~p~~~~~p~~~w~c~~c~~ 62 (340)
+...| +|++.+. ..|+.||.|+ ..||+.|+. |+.+|.|.|+||.|..
T Consensus 10 e~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg---l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS---LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT---CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC---cCcCCCCCEECcCccc
Confidence 35678 9999755 4799999955 899999999 5678999999999964
No 99
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=2.1e-08 Score=72.77 Aligned_cols=44 Identities=27% Similarity=0.643 Sum_probs=39.1
Q ss_pred CCcccccccCCCCCCcccCCCCc-ccchhhhhhhccCCCCCCCCCcccCC
Q 019484 146 GSLNCSFCMQLPERPVTTPCGHN-FCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv~l~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
+...|.||++.+.+++.+||||. ||..|+.. ...||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 35689999999999999999999 99999984 3589999998875
No 100
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.63 E-value=6.4e-09 Score=74.27 Aligned_cols=47 Identities=23% Similarity=0.501 Sum_probs=41.2
Q ss_pred CcccccccCCCCCCccc--CCCCc-ccchhhhhhhccCCCCCCCCCcccCC
Q 019484 147 SLNCSFCMQLPERPVTT--PCGHN-FCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l--~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
...|+||++.+.+++.+ ||||. ||..|+.+++.. ...||+||..+..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 56 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL 56 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc
Confidence 45799999999999887 99998 999999998865 5789999998864
No 101
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.63 E-value=1.6e-08 Score=79.87 Aligned_cols=47 Identities=19% Similarity=0.454 Sum_probs=40.2
Q ss_pred CCcccccccCCCCCC------------------cccCCCCcccchhhhhhhccCCCCCCCCCcccC
Q 019484 146 GSLNCSFCMQLPERP------------------VTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 146 ~~~~C~iC~~~~~~p------------------v~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
++..|+||++.|..+ +.++|+|.|+..||.+|+.. +..||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 456799999999866 33699999999999999987 689999999864
No 102
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.60 E-value=1.2e-08 Score=96.84 Aligned_cols=53 Identities=30% Similarity=0.625 Sum_probs=47.3
Q ss_pred chhhhhhcCCCcccccccCCCCCCcccCCCCc-ccchhhhhhhccCCCCCCCCCcccCC
Q 019484 137 ENELSDIFGGSLNCSFCMQLPERPVTTPCGHN-FCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 137 ~~~~~~~~~~~~~C~iC~~~~~~pv~l~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
....+..+++++.|+||++.+.+|+.++|||. ||..|+..| ..||+||..+..
T Consensus 285 ~~~~~~~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 285 LEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHHHHHHHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred HHHHHHhCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 34567788889999999999999999999999 999999977 579999999875
No 103
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.52 E-value=1.8e-08 Score=77.67 Aligned_cols=49 Identities=27% Similarity=0.682 Sum_probs=40.2
Q ss_pred CCcccccccCCCCCCccc---CCCCcccchhhhhhhcc----C---CCCCCC--CCcc--cCC
Q 019484 146 GSLNCSFCMQLPERPVTT---PCGHNFCLKCFQKWIGL----G---KKTCAK--CRCI--IPS 194 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv~l---~CgH~FC~~Ci~~~~~~----~---~~~CP~--Cr~~--~~~ 194 (340)
+.+.|+||++.+..|+++ +|||.||..|+..++.. + ...||. |+.. +..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 367899999999988765 79999999999998762 2 358999 9988 554
No 104
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.49 E-value=2.8e-08 Score=70.46 Aligned_cols=48 Identities=13% Similarity=0.220 Sum_probs=42.9
Q ss_pred CcccccccCCCCCCccc-CCCCcccchhhhhhhccCCCCCCCCCcccCCC
Q 019484 147 SLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGLGKKTCAKCRCIIPSK 195 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 195 (340)
.+.|+|+++++.+||++ ++||+|++.||.+|+.. ...||+.+.++...
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChh
Confidence 57899999999999999 99999999999999986 45799999998763
No 105
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=98.46 E-value=6.2e-09 Score=84.54 Aligned_cols=50 Identities=24% Similarity=0.623 Sum_probs=42.7
Q ss_pred CcccccccCCCCCCceeeeCCCCCCcccCCCCCCCC-----CCC--CCCCccCCCCCCCCc
Q 019484 12 DGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPE-----SLA--STLLWECPDCTGDAA 65 (340)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~-----~~~--p~~~w~c~~c~~~~~ 65 (340)
+..|.+|+.+. ++|+||.|++.||..||. |+| ..+ |.+.|+|+-|...+.
T Consensus 57 ~~~C~vC~dGG---~LlcCd~Cpr~Fc~~Cl~-~~lg~~~l~~i~~~~~~W~C~~C~~~pl 113 (129)
T 3ql9_A 57 DEQCRWCAEGG---NLICCDFCHNAFCKKCIL-RNLGRRELSTIMDENNQWYCYICHPEPL 113 (129)
T ss_dssp BSSCTTTCCCS---EEEECSSSSCEEEHHHHH-HHTCHHHHHHHTCTTSCCCCTTTCCGGG
T ss_pred CCcCeecCCCC---eeEecCCCchhhhHHHhC-CCcchhHHHHhccCCCCeEcCCcCCHHH
Confidence 56799999874 899999999999999999 874 355 899999999986553
No 106
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.43 E-value=2.8e-08 Score=79.57 Aligned_cols=48 Identities=27% Similarity=0.621 Sum_probs=40.5
Q ss_pred cccccccCCC-------CCCceeeeCCCCCCcccCCCCCCCCC---CCCCCCccCCCCC
Q 019484 13 GMCMRCKETP-------VEEEQLCCKTCATPWHVACLVRPPES---LASTLLWECPDCT 61 (340)
Q Consensus 13 ~~c~~c~~~~-------~~~~~l~c~~c~~~~h~~cl~~p~~~---~~p~~~w~c~~c~ 61 (340)
..|.+|..+. +.++||.|+.|++.||++||. +++. .+|++.|+|+.|.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~-~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQ-FTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTT-CCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCC-ChhhhhhccCCCccCccccC
Confidence 5788997754 457999999999999999999 7643 5789999999994
No 107
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.35 E-value=8e-08 Score=69.95 Aligned_cols=47 Identities=28% Similarity=0.662 Sum_probs=38.2
Q ss_pred CCcccccccCCCCCCceeeeCCCC---CCcccCCCCCCCCCCCCCCCccCCCCCC
Q 019484 11 GDGMCMRCKETPVEEEQLCCKTCA---TPWHVACLVRPPESLASTLLWECPDCTG 62 (340)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~c~---~~~h~~cl~~p~~~~~p~~~w~c~~c~~ 62 (340)
+...| +|++.+. ..|+.||.|+ ..||+.|+. |+.+|.+.||||.|..
T Consensus 5 ~~~yC-~C~~~~~-g~MI~CD~cdC~~~WfH~~Cvg---l~~~p~~~w~Cp~C~~ 54 (70)
T 1x4i_A 5 SSGYC-ICNQVSY-GEMVGCDNQDCPIEWFHYGCVG---LTEAPKGKWYCPQCTA 54 (70)
T ss_dssp CCCCS-TTSCCCC-SSEECCSCTTCSCCCEEHHHHT---CSSCCSSCCCCHHHHH
T ss_pred CCeEE-EcCCCCC-CCEeEeCCCCCCccCCcccccc---cCcCCCCCEECCCCCc
Confidence 35567 4888754 4899999987 789999999 4568999999999963
No 108
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=4.2e-07 Score=67.95 Aligned_cols=48 Identities=27% Similarity=0.647 Sum_probs=40.2
Q ss_pred CcccccccCCCC--CCcccCCC-----CcccchhhhhhhccC-CCCCCCCCcccCC
Q 019484 147 SLNCSFCMQLPE--RPVTTPCG-----HNFCLKCFQKWIGLG-KKTCAKCRCIIPS 194 (340)
Q Consensus 147 ~~~C~iC~~~~~--~pv~l~Cg-----H~FC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 194 (340)
...|.||++.+. .++.+||. |.|+..||.+|+... ...||+||..+..
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 457999998774 67778996 999999999998853 3699999998865
No 109
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.30 E-value=8.7e-08 Score=76.86 Aligned_cols=46 Identities=22% Similarity=0.541 Sum_probs=0.4
Q ss_pred CcccccccCCCCCC-----------------cc-cCCCCcccchhhhhhhccCCCCCCCCCcccC
Q 019484 147 SLNCSFCMQLPERP-----------------VT-TPCGHNFCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 147 ~~~C~iC~~~~~~p-----------------v~-l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
.-.|.||++.|..+ +. ++|+|.|+..||.+|+.. ...||+||+.+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 45799999999763 22 489999999999999987 679999999864
No 110
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=98.19 E-value=8.4e-07 Score=64.14 Aligned_cols=49 Identities=22% Similarity=0.477 Sum_probs=40.8
Q ss_pred CCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCC
Q 019484 11 GDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTG 62 (340)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~ 62 (340)
+...| +|+...+.+.|+.||.|...||+.|+. .....+| +.|+||.|..
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvg-i~~~~~~-~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECNECHTWIHLSCAK-IRKSNVP-EVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECTTTCCEEETTTTT-CCTTSCC-SSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEECCCCCccccccccC-cCcccCC-CcEECCCCCC
Confidence 35567 999988877899999999999999999 6555555 6999999964
No 111
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.09 E-value=1.2e-06 Score=62.51 Aligned_cols=54 Identities=26% Similarity=0.674 Sum_probs=42.1
Q ss_pred CCcccccccCCCC-CCceeeeCCCCCCcccCCCCCCCCCCCC-CCCccCCCCCCCCc
Q 019484 11 GDGMCMRCKETPV-EEEQLCCKTCATPWHVACLVRPPESLAS-TLLWECPDCTGDAA 65 (340)
Q Consensus 11 ~~~~c~~c~~~~~-~~~~l~c~~c~~~~h~~cl~~p~~~~~p-~~~w~c~~c~~~~~ 65 (340)
+...|.+|++..+ ...|+.||.|...||+.|+. -....+. ...|+|+.|.....
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvg-l~~~~~~~~~~~~C~~C~~k~~ 60 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVK-ITPARAEHIKQYKCPSCSNKSG 60 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTT-CCTTGGGGCSSCCCHHHHTTTC
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccC-cChhHhcCCCcEECCCCcCcCC
Confidence 4667889999764 56789999999999999999 5443333 37899999986543
No 112
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=97.99 E-value=8.7e-07 Score=65.37 Aligned_cols=53 Identities=26% Similarity=0.559 Sum_probs=44.8
Q ss_pred CCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCC------------CCCCCCCCccCCCCCCCC
Q 019484 10 NGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPP------------ESLASTLLWECPDCTGDA 64 (340)
Q Consensus 10 ~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~------------~~~~p~~~w~c~~c~~~~ 64 (340)
-+|..|.||..-. .+.++.|..|.+.||..||. ++ +...+++-|.|++|..-.
T Consensus 13 ~~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~-r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL~ 77 (89)
T 1wil_A 13 VNDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLR-RMGYIQGDSAAEVTEMAHTETGWSCHYCDNIN 77 (89)
T ss_dssp CCSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHH-HHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCC
T ss_pred CCCcccCcccccc-ccceeccccccccccHhhcc-cccccccHHHHHHHHccCCCCCccccccchhh
Confidence 4899999998654 46899999999999999999 66 666788899999996543
No 113
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.93 E-value=3.8e-06 Score=61.40 Aligned_cols=49 Identities=20% Similarity=0.433 Sum_probs=38.3
Q ss_pred CcccccccCCCCCC-ceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCC
Q 019484 12 DGMCMRCKETPVEE-EQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTG 62 (340)
Q Consensus 12 ~~~c~~c~~~~~~~-~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~ 62 (340)
...| +|+...++. .|+.||.|...||+.|+. ..........|+||.|..
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg-~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIG-INNADALPSKFLCFRCIE 65 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTT-CCTTSCCCSCCCCHHHHH
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeec-cCccccCCCcEECCCccC
Confidence 4568 799986554 699999999999999999 443323458999999974
No 114
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.86 E-value=2e-05 Score=57.73 Aligned_cols=48 Identities=23% Similarity=0.556 Sum_probs=38.9
Q ss_pred CcccccccCCCCCCcc-cCCCCcccchhhhhhhccC-CCCCCCCCcccCC
Q 019484 147 SLNCSFCMQLPERPVT-TPCGHNFCLKCFQKWIGLG-KKTCAKCRCIIPS 194 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~-l~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 194 (340)
...|.||.+++..-.. ..|+|.|...||.+|++.. ...||+||..+..
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 4579999999974332 3899999999999999853 3799999988764
No 115
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.80 E-value=6.2e-06 Score=56.29 Aligned_cols=44 Identities=20% Similarity=0.454 Sum_probs=36.7
Q ss_pred cccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCC
Q 019484 17 RCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTG 62 (340)
Q Consensus 17 ~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~ 62 (340)
+|+...+...|+.||.|...||+.|+. .....+| ..|+||.|..
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvg-i~~~~~~-~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAK-IRKSNVP-EVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTT-CCGGGCC-SSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccC-CCcccCC-CcEECcCCCC
Confidence 788887777999999999999999999 5544444 6999999963
No 116
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.76 E-value=1.1e-05 Score=61.99 Aligned_cols=46 Identities=26% Similarity=0.493 Sum_probs=38.5
Q ss_pred ccccccCCCCCC-cccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 149 NCSFCMQLPERP-VTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 149 ~C~iC~~~~~~p-v~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
.|++|.-.+..- .++||.|.||+.|+..|.+++...||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 588888877744 4469999999999999987778899999998763
No 117
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.73 E-value=1.3e-05 Score=57.86 Aligned_cols=49 Identities=27% Similarity=0.599 Sum_probs=36.1
Q ss_pred CcccccccCCCCCCceeeeCC--CCCCcccCCCCC---CCCCCCCCCCccCCCCC
Q 019484 12 DGMCMRCKETPVEEEQLCCKT--CATPWHVACLVR---PPESLASTLLWECPDCT 61 (340)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~--c~~~~h~~cl~~---p~~~~~p~~~w~c~~c~ 61 (340)
...| +|+...+...|+.||. |...||+.|+.- |.........|+||.|.
T Consensus 10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr 63 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCR 63 (68)
T ss_dssp EECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHH
T ss_pred CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCcc
Confidence 4557 7998878889999995 999999999851 11111123479999996
No 118
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.71 E-value=2.5e-06 Score=61.04 Aligned_cols=48 Identities=19% Similarity=0.555 Sum_probs=37.8
Q ss_pred CCcccccccCCC-CCCceeeeC-CCCCCcccCCCCCCCCCC--------CCCCCccCCCCC
Q 019484 11 GDGMCMRCKETP-VEEEQLCCK-TCATPWHVACLVRPPESL--------ASTLLWECPDCT 61 (340)
Q Consensus 11 ~~~~c~~c~~~~-~~~~~l~c~-~c~~~~h~~cl~~p~~~~--------~p~~~w~c~~c~ 61 (340)
+...|.+|++.. +...++.|| .|...||..|.. |+. -|.+.|+||.|.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg---lt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG---MTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT---CCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC---CCHHHHHHhhccCCCcEECcCcc
Confidence 356789999974 456789999 999999999987 232 377899999985
No 119
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.60 E-value=4.1e-05 Score=53.78 Aligned_cols=48 Identities=19% Similarity=0.538 Sum_probs=39.1
Q ss_pred CcccccccCCCCCCcccCCC--C---cccchhhhhhhcc-CCCCCCCCCcccCC
Q 019484 147 SLNCSFCMQLPERPVTTPCG--H---NFCLKCFQKWIGL-GKKTCAKCRCIIPS 194 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l~Cg--H---~FC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 194 (340)
...|.||++....+..+||. + .|...||.+|+.. ++..||+|+..+..
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 45799999887777777865 4 7999999999873 46899999998763
No 120
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.60 E-value=1.2e-05 Score=63.08 Aligned_cols=51 Identities=20% Similarity=0.578 Sum_probs=38.6
Q ss_pred cccccccCCC-CCCceeeeC-CCCCCcccCCCCCCCC------CCCCCCCccCCCCCCCC
Q 019484 13 GMCMRCKETP-VEEEQLCCK-TCATPWHVACLVRPPE------SLASTLLWECPDCTGDA 64 (340)
Q Consensus 13 ~~c~~c~~~~-~~~~~l~c~-~c~~~~h~~cl~~p~~------~~~p~~~w~c~~c~~~~ 64 (340)
-.|.+|++.- +...++.|| .|...||..|+. -.. ..-|++.|+||.|....
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVg-lt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTG-MTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTT-CCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCC-cCHHHHHhhccCCCCCEECccccCcC
Confidence 4688999973 345788897 999999999998 321 11367899999997544
No 121
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.59 E-value=3.9e-06 Score=71.87 Aligned_cols=50 Identities=22% Similarity=0.461 Sum_probs=39.2
Q ss_pred CCcccccccCCCC-CCceeeeCCCCCCcccCCCCCCCCC-CCCCCCccCCCCCC
Q 019484 11 GDGMCMRCKETPV-EEEQLCCKTCATPWHVACLVRPPES-LASTLLWECPDCTG 62 (340)
Q Consensus 11 ~~~~c~~c~~~~~-~~~~l~c~~c~~~~h~~cl~~p~~~-~~p~~~w~c~~c~~ 62 (340)
....| +|++..+ ...++.||.|+..||..|+. .... ....+.|+||.|..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~-~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVG-ILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHT-CCHHHHTTCSSCCCHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcC-CchhhccCccCeecCCCcc
Confidence 45679 9999754 56799999999999999998 4322 22468999999974
No 122
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.55 E-value=2.5e-06 Score=62.99 Aligned_cols=50 Identities=24% Similarity=0.569 Sum_probs=38.7
Q ss_pred cccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCC-----CCCCccCCCCCCCC
Q 019484 13 GMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLA-----STLLWECPDCTGDA 64 (340)
Q Consensus 13 ~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~-----p~~~w~c~~c~~~~ 64 (340)
..| +|++..+.+.|+.||.|...||+.|+. -..... +...|+|+.|....
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvg-l~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCVG-ISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSCCEEEHHHHS-CCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CEE-ECCCccCCCCEEEeCCCCCcEeCeEEc-cchhhhhhccCCCCeEECcCCcCcc
Confidence 456 899988777899999999999999998 332211 35789999997543
No 123
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.54 E-value=1.3e-05 Score=54.61 Aligned_cols=47 Identities=17% Similarity=0.453 Sum_probs=35.1
Q ss_pred ccccccCCCC-CCceeeeC-CCCCCcccCCCCCCCCCCCCCCCccCCCCC
Q 019484 14 MCMRCKETPV-EEEQLCCK-TCATPWHVACLVRPPESLASTLLWECPDCT 61 (340)
Q Consensus 14 ~c~~c~~~~~-~~~~l~c~-~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~ 61 (340)
.|-+|++..+ .+.++.|| .|+..||+.|+. -.......+.|+||.|.
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvg-l~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVG-VSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTT-CCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccC-CCccccCCCCEECCCCC
Confidence 4778988764 56689999 899999999998 32222224889999984
No 124
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.50 E-value=1.7e-05 Score=58.94 Aligned_cols=51 Identities=24% Similarity=0.514 Sum_probs=38.5
Q ss_pred CcccccccCCCC-CCceeeeCCCCCCcccCCCCCCCCCCC-CCCCccCCCCCCCC
Q 019484 12 DGMCMRCKETPV-EEEQLCCKTCATPWHVACLVRPPESLA-STLLWECPDCTGDA 64 (340)
Q Consensus 12 ~~~c~~c~~~~~-~~~~l~c~~c~~~~h~~cl~~p~~~~~-p~~~w~c~~c~~~~ 64 (340)
...| +|+...+ ...|+.||.|...||..|+. -....+ ....|+|+.|....
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvg-l~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVG-IEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHT-CCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecC-cccccccCCCeEECCCccccc
Confidence 3456 8999764 67899999999999999998 322222 24689999998654
No 125
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.33 E-value=4.4e-05 Score=56.54 Aligned_cols=51 Identities=20% Similarity=0.477 Sum_probs=39.5
Q ss_pred CcccccccCCCCCCceeeeC--CCCCCcccCCCCCCCCCC-----CCCCCccCCCCCCCC
Q 019484 12 DGMCMRCKETPVEEEQLCCK--TCATPWHVACLVRPPESL-----ASTLLWECPDCTGDA 64 (340)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~--~c~~~~h~~cl~~p~~~~-----~p~~~w~c~~c~~~~ 64 (340)
...| +|+...+...|+.|| .|...||+.|+. -+-.. .-...|+||.|....
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVg-i~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVI-LPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHS-CCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEc-cccccccccccCCCCEECCCCCccc
Confidence 4578 899987778999999 999999999988 32221 113689999997644
No 126
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=97.17 E-value=0.00011 Score=58.62 Aligned_cols=55 Identities=27% Similarity=0.498 Sum_probs=36.9
Q ss_pred CCCCcccccccCCC-CCCceeeeCCCCCCcccCCCCCCCCCCCCCCC----ccCCCCCCCC
Q 019484 9 CNGDGMCMRCKETP-VEEEQLCCKTCATPWHVACLVRPPESLASTLL----WECPDCTGDA 64 (340)
Q Consensus 9 ~~~~~~c~~c~~~~-~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~----w~c~~c~~~~ 64 (340)
|+....|..|.... .+..||.|+.|+..||..|+. ++...++.++ |+||.|....
T Consensus 56 c~~c~~c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~-~~~~~~~~~~~~~~~~C~~C~~~~ 115 (117)
T 4bbq_A 56 CSLCGEVDQNEETQDFEKKLMECCICNEIVHPGCLQ-MDGEGLLNEELPNCWECPKCYQED 115 (117)
T ss_dssp CTTTCCBCCHHHHCCGGGSCEEETTTCCEECGGGCC-SCCCCEECSSSSSEEECTTTC---
T ss_pred ccccCcccccccccccCcceEEeeecCCeEECCCCC-CCccccccccCCCCeECCCCcCCC
Confidence 44344444444333 234578999999999999999 8777665544 9999998654
No 127
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.10 E-value=0.00014 Score=68.15 Aligned_cols=51 Identities=18% Similarity=0.562 Sum_probs=39.4
Q ss_pred CCcccccccCCCCC----Cc----ccCCCCcccchhhhhhhccC----------CCCCCCCCcccCCCC
Q 019484 146 GSLNCSFCMQLPER----PV----TTPCGHNFCLKCFQKWIGLG----------KKTCAKCRCIIPSKM 196 (340)
Q Consensus 146 ~~~~C~iC~~~~~~----pv----~l~CgH~FC~~Ci~~~~~~~----------~~~CP~Cr~~~~~~~ 196 (340)
....|+||+..+.. |. ...|+|.|+..||.+|+..- ...||.||.++...+
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 35679999998875 31 14799999999999998731 148999999987643
No 128
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=96.94 E-value=0.0001 Score=54.09 Aligned_cols=48 Identities=21% Similarity=0.497 Sum_probs=36.6
Q ss_pred ccccccCCCC-CCceeeeCCCCCCcccCCCCCCCCCCCCC-CCccCCCCCC
Q 019484 14 MCMRCKETPV-EEEQLCCKTCATPWHVACLVRPPESLAST-LLWECPDCTG 62 (340)
Q Consensus 14 ~c~~c~~~~~-~~~~l~c~~c~~~~h~~cl~~p~~~~~p~-~~w~c~~c~~ 62 (340)
+--+|+...+ ...|+.||.|...||..|+. -....++. ..|+|+.|..
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg-~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECDACKDWFHGSCVG-VEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHT-CCTTTGGGBSSCCCHHHHH
T ss_pred eEEECCCcCCCCCCEEEcCCCCCCEeccccc-ccccccCCCCEEECCCCcc
Confidence 3348988654 56899999999999999998 44343333 5799999974
No 129
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=96.57 E-value=0.0011 Score=69.70 Aligned_cols=74 Identities=14% Similarity=0.035 Sum_probs=65.5
Q ss_pred hhhcCCCcccccccCCCCCCcccCCC-CcccchhhhhhhccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHHhhCC
Q 019484 141 SDIFGGSLNCSFCMQLPERPVTTPCG-HNFCLKCFQKWIGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAKRSNT 218 (340)
Q Consensus 141 ~~~~~~~~~C~iC~~~~~~pv~l~Cg-H~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~~~~~ 218 (340)
...+.+++.|||-.+++.+||+++-| ++|=+..|.+|+.. ..+||.-|.++.. ..+.+|..|+..|+.+...+.
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~---~~liPN~~Lk~~I~~w~~~~~ 959 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKL---EDVTPNEELRQKILCFKKQKK 959 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG---GGCEECHHHHHHHHHHHHHHH
T ss_pred ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCc---ccccccHHHHHHHHHHHHHHH
Confidence 34566799999999999999999998 69999999999987 6799999999986 378999999999999987665
No 130
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=96.48 E-value=0.0012 Score=56.79 Aligned_cols=52 Identities=17% Similarity=0.476 Sum_probs=39.3
Q ss_pred cccccccCCCCCCc----eeeeCCCCCCcccCCCCCCCCC------CCCC-CCccCCCCCCCCc
Q 019484 13 GMCMRCKETPVEEE----QLCCKTCATPWHVACLVRPPES------LAST-LLWECPDCTGDAA 65 (340)
Q Consensus 13 ~~c~~c~~~~~~~~----~l~c~~c~~~~h~~cl~~p~~~------~~p~-~~w~c~~c~~~~~ 65 (340)
..|.+|++.-++++ |+.||.|+..||..|.. ..-. .+|+ ..|+||.|.....
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvg-i~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCEN-LSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSS-CCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccc-cCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 46999999766654 99999999999999998 4211 1232 3799999986554
No 131
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=96.42 E-value=0.00096 Score=65.82 Aligned_cols=37 Identities=22% Similarity=0.440 Sum_probs=28.1
Q ss_pred ceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCC
Q 019484 26 EQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTG 62 (340)
Q Consensus 26 ~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~ 62 (340)
.++.||.|+..||..|..-..-..-..+.|+||.|..
T Consensus 57 ~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~ 93 (528)
T 3pur_A 57 QWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVP 93 (528)
T ss_dssp SEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHH
T ss_pred CEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcC
Confidence 5789999999999999982222222347899999964
No 132
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.12 E-value=0.0022 Score=49.33 Aligned_cols=32 Identities=25% Similarity=0.668 Sum_probs=27.7
Q ss_pred CCcccccccCC-CCCCcc--cCCCCcccchhhhhh
Q 019484 146 GSLNCSFCMQL-PERPVT--TPCGHNFCLKCFQKW 177 (340)
Q Consensus 146 ~~~~C~iC~~~-~~~pv~--l~CgH~FC~~Ci~~~ 177 (340)
+++.|+||.+. +..|+. +.|+|+||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 46889999975 778888 899999999999983
No 133
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=95.74 E-value=0.0045 Score=48.40 Aligned_cols=45 Identities=16% Similarity=0.264 Sum_probs=37.6
Q ss_pred CCCCCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccC
Q 019484 7 LPCNGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWEC 57 (340)
Q Consensus 7 ~~~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c 57 (340)
|-|-. -.|.+|++... +.|..|+++||..|+. +.|+..+...|+|
T Consensus 54 W~Cp~-c~C~~C~k~~~----~~C~~Cp~sfC~~c~~-g~l~~~~~~~~~c 98 (107)
T 4gne_A 54 WECPW-HQCDECSSAAV----SFCEFCPHSFCKDHEK-GALVPSALEGRLC 98 (107)
T ss_dssp CCCGG-GBCTTTCSBCC----EECSSSSCEECTTTCT-TSCEECTTTTCEE
T ss_pred EECCC-CCCCcCCCCCC----cCcCCCCcchhhhccC-CcceecCCCCcee
Confidence 44442 24788888753 8999999999999999 9999999999998
No 134
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=95.29 E-value=0.0015 Score=64.61 Aligned_cols=49 Identities=24% Similarity=0.552 Sum_probs=36.6
Q ss_pred CcccccccCCCC-CCceeeeCCCCCCcccCCCCCCCCCCCC-CCCccCCCCCC
Q 019484 12 DGMCMRCKETPV-EEEQLCCKTCATPWHVACLVRPPESLAS-TLLWECPDCTG 62 (340)
Q Consensus 12 ~~~c~~c~~~~~-~~~~l~c~~c~~~~h~~cl~~p~~~~~p-~~~w~c~~c~~ 62 (340)
...| +|+...+ ...|+.||.|...||..|+. -.-.... .+.|+||.|..
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvg-l~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVG-VEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHT-CCGGGGGGEEEBCCHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEccCCCCceeeeecC-cCcccccCCCEEECCCCcC
Confidence 3456 9998754 67899999999999999998 3222222 26799999963
No 135
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=94.38 E-value=0.045 Score=48.85 Aligned_cols=48 Identities=23% Similarity=0.553 Sum_probs=38.7
Q ss_pred CcccccccCCCCCCccc-CCCCcccchhhhhhhccC-CCCCCCCCcccCC
Q 019484 147 SLNCSFCMQLPERPVTT-PCGHNFCLKCFQKWIGLG-KKTCAKCRCIIPS 194 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l-~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 194 (340)
...|.+|.+++..-+.= .|+|.|+..|+.+|++.. ...||.|+.....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 56799999988854332 599999999999998753 5699999987654
No 136
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=93.45 E-value=0.0047 Score=60.25 Aligned_cols=48 Identities=23% Similarity=0.487 Sum_probs=35.7
Q ss_pred ccccccCCCC-CCceeeeCCCCCCcccCCCCCCCCCCCC-CCCccCCCCCC
Q 019484 14 MCMRCKETPV-EEEQLCCKTCATPWHVACLVRPPESLAS-TLLWECPDCTG 62 (340)
Q Consensus 14 ~c~~c~~~~~-~~~~l~c~~c~~~~h~~cl~~p~~~~~p-~~~w~c~~c~~ 62 (340)
+.-+|+...+ ...|+.||.|...||..|+. -.-...+ .+.|+||.|..
T Consensus 6 ~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVg-i~~~~~~~~~~y~C~~C~~ 55 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVG-VEEEKAADIDLYHCPNCEV 55 (447)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHT-CCHHHHTTEEECCCHHHHH
T ss_pred eEEeCCCcCCCCCCeEEcCCCCcccccccCC-cCcccccCCCEEECCCCcc
Confidence 3448988754 67899999999999999998 3222222 36899999964
No 137
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=92.70 E-value=0.039 Score=44.15 Aligned_cols=40 Identities=20% Similarity=0.400 Sum_probs=29.8
Q ss_pred ceeeeCCCCCCcccCCCCCCC-----CCCCC-CCCccCCCCCCCCc
Q 019484 26 EQLCCKTCATPWHVACLVRPP-----ESLAS-TLLWECPDCTGDAA 65 (340)
Q Consensus 26 ~~l~c~~c~~~~h~~cl~~p~-----~~~~p-~~~w~c~~c~~~~~ 65 (340)
.|+.||.|...||..|+.-+. |..+| .-.|.||.|.....
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~~ 46 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHV 46 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTSC
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccccceeeCcccccccc
Confidence 378899999999999987221 23445 34799999986554
No 138
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=92.04 E-value=0.08 Score=39.86 Aligned_cols=48 Identities=25% Similarity=0.667 Sum_probs=37.5
Q ss_pred CCCcccccccCCCCCCcccCCC-CcccchhhhhhhccCCCCCCCCCcccCCC
Q 019484 145 GGSLNCSFCMQLPERPVTTPCG-HNFCLKCFQKWIGLGKKTCAKCRCIIPSK 195 (340)
Q Consensus 145 ~~~~~C~iC~~~~~~pv~l~Cg-H~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 195 (340)
-..+.|..|....+. .+.|. |.+|..|+...+.. +..||+|..++..+
T Consensus 26 ~G~~nCKsCWf~~k~--LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 26 LGPQFCKSCWFENKG--LVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPTK 74 (99)
T ss_dssp SCCCCCCSSCSCCSS--EEECSSCEEEHHHHHHTCSS-SSEETTTTEECCCC
T ss_pred cCcccChhhccccCC--eeeecchhhHHHHHHHHHhh-ccCCcccCCcCCcc
Confidence 345789999876653 44665 88999999988776 67999999999874
No 139
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=87.49 E-value=0.28 Score=32.46 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=34.5
Q ss_pred CCCcccccccCCCCCCc-eeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCC
Q 019484 10 NGDGMCMRCKETPVEEE-QLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGD 63 (340)
Q Consensus 10 ~~~~~c~~c~~~~~~~~-~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~ 63 (340)
+++..|.+|...-...+ ...-..|...||..||. .-+.. ...||-|..+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~-~w~~~----~~~CP~Cr~~ 52 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVD-MWLGS----HSTCPLCRLT 52 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHH-HTTTT----CCSCSSSCCC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHH-HHHHc----CCcCcCCCCE
Confidence 56778999998754433 23333588999999998 55543 4579999754
No 140
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=86.32 E-value=0.41 Score=45.21 Aligned_cols=65 Identities=18% Similarity=0.317 Sum_probs=48.9
Q ss_pred CCCcccccccCCCCCCccc-CCCCcccchh--hhhh-hccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHH
Q 019484 145 GGSLNCSFCMQLPERPVTT-PCGHNFCLKC--FQKW-IGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRM 212 (340)
Q Consensus 145 ~~~~~C~iC~~~~~~pv~l-~CgH~FC~~C--i~~~-~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~ 212 (340)
.-.|.||+-...+..|+.- .|.|.-|..- +... .....+.||+|.+.+.. ..+.++..+..+++.
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~---~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL---ENLAISEFVDDILQN 315 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG---GGEEEBHHHHHHHTT
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH---HHeeEcHHHHHHHHh
Confidence 3468999999999999886 8999966653 2221 22457999999998876 488888888777643
No 141
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=85.43 E-value=0.46 Score=44.71 Aligned_cols=65 Identities=14% Similarity=0.214 Sum_probs=48.9
Q ss_pred cCCCcccccccCCCCCCccc-CCCCcccchhh--hhh-hccCCCCCCCCCcccCCCCCCCCCccHHHHHHHH
Q 019484 144 FGGSLNCSFCMQLPERPVTT-PCGHNFCLKCF--QKW-IGLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIR 211 (340)
Q Consensus 144 ~~~~~~C~iC~~~~~~pv~l-~CgH~FC~~Ci--~~~-~~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~ 211 (340)
+.-.+.||+-...+..|+.- .|.|.-|..-. ... ...+.+.||+|.+.+.. ..+.++..+.+++.
T Consensus 212 ~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~---~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 212 LRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY---ESLILDGLFMEILN 280 (360)
T ss_dssp EEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG---GGEEEBHHHHHHHT
T ss_pred eEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH---HHeEEcHHHHHHHH
Confidence 34478999999999999886 89999666532 221 12457999999998876 47888888877764
No 142
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=85.38 E-value=1 Score=31.59 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=32.4
Q ss_pred CcccccccCCCCCCcccCCCCcccchhhhhhhc---cCCCCCCCCCccc
Q 019484 147 SLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIG---LGKKTCAKCRCII 192 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~---~~~~~CP~Cr~~~ 192 (340)
...|.||.+.-..-..-.|...|+..|+...+. .+.+.|+.|....
T Consensus 12 ~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 12 GARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 346999987533212237889999999986654 3578999997643
No 143
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=85.22 E-value=0.54 Score=34.23 Aligned_cols=34 Identities=32% Similarity=0.776 Sum_probs=28.6
Q ss_pred CCcccccccCCCCCCcccCC----CCcccchhhhhhhc
Q 019484 146 GSLNCSFCMQLPERPVTTPC----GHNFCLKCFQKWIG 179 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv~l~C----gH~FC~~Ci~~~~~ 179 (340)
..+.|.+|.+-+.+.-...| .|.||..|-...++
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence 46889999999998877666 49999999887765
No 144
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=83.44 E-value=0.14 Score=40.18 Aligned_cols=34 Identities=18% Similarity=0.390 Sum_probs=27.4
Q ss_pred cccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCC
Q 019484 13 GMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCT 61 (340)
Q Consensus 13 ~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~ 61 (340)
.+|.+|++.+ |+.|+..||++|+. +|. |.|..|.
T Consensus 8 ~~C~~C~~~~-------C~~C~~c~~~~~~~-~~~-------~~~~~c~ 41 (117)
T 4bbq_A 8 RKCKACVQGE-------CGVCHYCRDMKKFG-GPG-------RMKQSCV 41 (117)
T ss_dssp SCSHHHHSCC-------CSCSHHHHHSGGGT-SCC-------CSCCCCG
T ss_pred CcCcCcCCcC-------CCCCCCCcCCcccC-CCC-------ccccchh
Confidence 4788888752 99999999999999 663 7777775
No 145
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=83.44 E-value=0.93 Score=38.30 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=31.8
Q ss_pred ccCCC-CCCceeeeCCCCCCcccCCCCCCCCCCCCCCCc----cCCCCCCCC
Q 019484 18 CKETP-VEEEQLCCKTCATPWHVACLVRPPESLASTLLW----ECPDCTGDA 64 (340)
Q Consensus 18 c~~~~-~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w----~c~~c~~~~ 64 (340)
|+... -...+|.|+.|-+.||..||. .++...=.++| .|..|...+
T Consensus 10 CG~~~~~~~~mLqC~~C~qWFH~~Cl~-~~~~~~lp~~~fY~F~C~~C~~~g 60 (177)
T 3rsn_A 10 EENGRQLGEVELQCGICTKWFTADTFG-IDTSSCLPFMTNYSFHCNVCHHSG 60 (177)
T ss_dssp -CTTCCTTSCEEECTTTCCEEEGGGGT-CCCTTCCTTCCSEEEECTTTSTTS
T ss_pred cCCCCCCCceeEeeccccceecHHHhc-ccccCccccceeEEEEccccCCCC
Confidence 65533 344679999999999999999 55444433444 499997644
No 146
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=83.02 E-value=1.5 Score=32.64 Aligned_cols=48 Identities=19% Similarity=0.489 Sum_probs=37.1
Q ss_pred CcccccccCCCC-----CCc--ccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 147 SLNCSFCMQLPE-----RPV--TTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 147 ~~~C~iC~~~~~-----~pv--~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
...|.||-+.+- ++. .-.|+--.|+.|+.--.+.++..||.|+..+..
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 458999998744 122 236888889999987777788999999998864
No 147
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.75 E-value=0.21 Score=35.60 Aligned_cols=51 Identities=20% Similarity=0.426 Sum_probs=35.0
Q ss_pred CCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 10 NGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 10 ~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
+++..|.+|...-...+.+..-.|.+.||..||. .-|.. ...||-|..+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~-~w~~~----~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVD-KWLKA----NRTCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHH-HHHHH----CSSCTTTCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHH-HHHHc----CCcCcCcCCcCC
Confidence 3567899999876555444444588999999998 53321 236999986543
No 148
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.72 E-value=0.58 Score=34.18 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=31.7
Q ss_pred CCcccccccCCCCCCceeeeCCC-----CCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 11 GDGMCMRCKETPVEEEQLCCKTC-----ATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~c-----~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
++..|.+|.....+++.|. --| .+.||..||. .=|.. .+...||-|..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~l~-~pC~C~Gs~h~fH~~Cl~-~Wl~~--~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLI-TPCHCTGSLHFVHQACLQ-QWIKS--SDTRCCELCKYEFI 69 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEE-CSSSCCSSSCCEETTHHH-HHHHH--HCCSBCSSSCCBCC
T ss_pred CCCCCeEcCccccCCCeeE-eccccCCcCCeeCHHHHH-HHHhh--CCCCCCCCCCCeee
Confidence 3568999987544333333 234 4999999999 41111 11238999976654
No 149
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=80.20 E-value=2.8 Score=34.08 Aligned_cols=43 Identities=21% Similarity=0.492 Sum_probs=32.8
Q ss_pred cccccccCCCCCCcccCCCCcccchhhhhhh----------ccCCCCCCCCCc
Q 019484 148 LNCSFCMQLPERPVTTPCGHNFCLKCFQKWI----------GLGKKTCAKCRC 190 (340)
Q Consensus 148 ~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~----------~~~~~~CP~Cr~ 190 (340)
..|.+|.+--.--..-.|-..||..||.+.+ ..+.+.||.|+.
T Consensus 64 d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 64 EQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4699999866543444899999999999654 246789999964
No 150
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=79.62 E-value=2.3 Score=28.26 Aligned_cols=44 Identities=20% Similarity=0.364 Sum_probs=32.5
Q ss_pred CCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 11 GDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
++..|.+|...-....+|. |.+.|+..||. . ..-.||-|.....
T Consensus 5 ~~~~C~IC~~~~~~p~~l~---CgH~fC~~Ci~-~-------~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLP---CLHTLCSGCLE-A-------SGMQCPICQAPWP 48 (56)
T ss_dssp CCSSCSSSCSSCBCCSCST---TSCCSBTTTCS-S-------SSSSCSSCCSSSS
T ss_pred cCCCceEeCCccCCeEEcC---CCCcccHHHHc-c-------CCCCCCcCCcEee
Confidence 4567999998766666665 56788888988 3 2457999987664
No 151
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=78.71 E-value=1.9 Score=29.64 Aligned_cols=46 Identities=20% Similarity=0.503 Sum_probs=31.3
Q ss_pred CcccccccCCCCCCcccCCCCcccchhhhhhhc---cCCCCCCCCCccc
Q 019484 147 SLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIG---LGKKTCAKCRCII 192 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~---~~~~~CP~Cr~~~ 192 (340)
+..|.||.+.-.--..-.|...|+..|+...+. .+.+.||.|....
T Consensus 9 ~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 9 MEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 456999987432222236888899999986443 4578999997643
No 152
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=78.34 E-value=1.9 Score=30.49 Aligned_cols=52 Identities=25% Similarity=0.413 Sum_probs=35.5
Q ss_pred CCCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 9 CNGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 9 ~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
-+.+..|.+|...-.....+.--.|.+.||..||. .-+.. ...||-|..+-.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~-~~~~~----~~~CP~Cr~~~~ 63 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIV-PWLEQ----HDSCPVCRKSLT 63 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTH-HHHTT----TCSCTTTCCCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHH-HHHHc----CCcCcCcCCccC
Confidence 45678899998865544433222488999999998 43332 257999976654
No 153
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=77.00 E-value=0.4 Score=39.77 Aligned_cols=50 Identities=22% Similarity=0.489 Sum_probs=38.2
Q ss_pred CcccccccCCCCCCceeeeC--CCCCCcccCCCCCCCCCC------CCCCCccCCCCCCCCc
Q 019484 12 DGMCMRCKETPVEEEQLCCK--TCATPWHVACLVRPPESL------ASTLLWECPDCTGDAA 65 (340)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~--~c~~~~h~~cl~~p~~~~------~p~~~w~c~~c~~~~~ 65 (340)
+..|.+|..+ .++|+|| .|.+.|-..||. =-+-. +....|.|=-|.+.+.
T Consensus 79 ~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~-~nvG~~~~~~i~~~d~W~Cy~C~P~~l 136 (159)
T 3a1b_A 79 QSYCTICCGG---REVLMCGNNNCCRCFCVECVD-LLVGPGAAQAAIKEDPWNCYMCGHKGT 136 (159)
T ss_dssp BSSCTTTSCC---SEEEECSSTTTCCEEEHHHHH-HHTCTTHHHHHHTSSSCCCTTTCSSCE
T ss_pred cceeeEecCC---CeEEeeCCCCCCCchhHHHHH-HhcCHhHHHHHhccCCCEEEecCCccH
Confidence 3468888877 4999999 899999999987 32222 4566799999987653
No 154
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=76.69 E-value=0.55 Score=37.00 Aligned_cols=47 Identities=17% Similarity=0.366 Sum_probs=0.5
Q ss_pred CcccccccCCCCC---------------CceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCC
Q 019484 12 DGMCMRCKETPVE---------------EEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGD 63 (340)
Q Consensus 12 ~~~c~~c~~~~~~---------------~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~ 63 (340)
++.|.+|...-.+ +..+.-..|...||..|+. +=|.. .=.||-|..+
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~-~Wl~~----~~~CP~Cr~~ 109 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCIS-RWLKT----RQVCPLDNRE 109 (117)
T ss_dssp C------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHH-HHHHc----CCcCCCCCCe
Confidence 5678888765321 1223334688999999999 63332 2259999765
No 155
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=75.44 E-value=0.88 Score=42.65 Aligned_cols=34 Identities=26% Similarity=0.591 Sum_probs=26.4
Q ss_pred CCCcccccccCCCCC-Cce--eeeC--CCCCCcccCCCC
Q 019484 10 NGDGMCMRCKETPVE-EEQ--LCCK--TCATPWHVACLV 43 (340)
Q Consensus 10 ~~~~~c~~c~~~~~~-~~~--l~c~--~c~~~~h~~cl~ 43 (340)
+...-|.+|-..-.+ .++ ..|+ .|.+.||..||.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~ 344 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLE 344 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGH
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHH
Confidence 345579999986555 333 4698 899999999999
No 156
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=75.09 E-value=0.18 Score=34.79 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=34.1
Q ss_pred CCcccccccCCCCCCceeee--CCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCC
Q 019484 11 GDGMCMRCKETPVEEEQLCC--KTCATPWHVACLVRPPESLASTLLWECPDCTGDA 64 (340)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c--~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~ 64 (340)
+...|.+|....+++.++.| .+.-+.+|..||. .=+. -.+.+.||-|..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~-~W~~--~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLS-TWLT--ISRNTACQICGVVY 57 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHH-HHHH--HHTCSBCTTTCCBC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHH-HHHH--hCCCCccCCCCCee
Confidence 45689999887665556665 2334489999998 4221 12467899997643
No 157
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=73.87 E-value=1.4 Score=26.39 Aligned_cols=15 Identities=27% Similarity=0.649 Sum_probs=11.6
Q ss_pred CCCCccCCCCCCCCc
Q 019484 51 STLLWECPDCTGDAA 65 (340)
Q Consensus 51 p~~~w~c~~c~~~~~ 65 (340)
-.|||.|+.|..-..
T Consensus 3 ~~gDW~C~~C~~~Nf 17 (33)
T 2k1p_A 3 SANDWQCKTCSNVNW 17 (33)
T ss_dssp SSSSCBCSSSCCBCC
T ss_pred CCCCcccCCCCCccc
Confidence 469999999975544
No 158
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=72.90 E-value=0.55 Score=30.89 Aligned_cols=49 Identities=22% Similarity=0.453 Sum_probs=32.7
Q ss_pred CCcccccccCCCC-CCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCC
Q 019484 11 GDGMCMRCKETPV-EEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDA 64 (340)
Q Consensus 11 ~~~~c~~c~~~~~-~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~ 64 (340)
.+..|.+|...-. .+....--.|...||..||. .-+..- ..||-|..+-
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~-~~~~~~----~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYE-EMLKEG----YRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHH-HHHHHT----CCCTTSCCSS
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHH-HHHHcC----CcCCCCCCcC
Confidence 4678999988643 23445555688999999998 422211 4699997543
No 159
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=72.72 E-value=0.38 Score=33.51 Aligned_cols=51 Identities=22% Similarity=0.362 Sum_probs=34.4
Q ss_pred CCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 10 NGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 10 ~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
+.+..|.+|...-........-.|.+.||..||. .-+.. ...||-|..+-.
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~-~~~~~----~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVD-QWLIT----NKKCPICRVDIE 62 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHH-HHHHH----CSBCTTTCSBSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHH-HHHHc----CCCCcCcCcccc
Confidence 4567899998765444444444688999999998 43322 235999986554
No 160
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=72.50 E-value=1.1 Score=26.72 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=10.1
Q ss_pred CCCccCCCCCCCC
Q 019484 52 TLLWECPDCTGDA 64 (340)
Q Consensus 52 ~~~w~c~~c~~~~ 64 (340)
.|||.|+.|..-.
T Consensus 3 ~gDW~C~~C~~~N 15 (32)
T 2lk0_A 3 FEDWLCNKCCLNN 15 (32)
T ss_dssp CSEEECTTTCCEE
T ss_pred CCCCCcCcCcCCc
Confidence 4899999996543
No 161
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=71.97 E-value=0.55 Score=36.27 Aligned_cols=47 Identities=17% Similarity=0.366 Sum_probs=30.3
Q ss_pred CcccccccCCCCC---------------CceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCC
Q 019484 12 DGMCMRCKETPVE---------------EEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGD 63 (340)
Q Consensus 12 ~~~c~~c~~~~~~---------------~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~ 63 (340)
+..|.+|...-.. +..+.--.|.+.||..||. +=|.. .=.||-|..+
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~-~Wl~~----~~~CP~Cr~~ 98 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCIS-RWLKT----RQVCPLDNRE 98 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHH-HHHTT----CSBCSSSCSB
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHH-HHHHc----CCcCcCCCCc
Confidence 5678888765322 1223334789999999999 53322 2359999865
No 162
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=71.79 E-value=2.3 Score=29.14 Aligned_cols=44 Identities=23% Similarity=0.499 Sum_probs=30.9
Q ss_pred CcccccccCCCCCCcccCCCCcccchhhhhhhc---cCCCCCCCCCc
Q 019484 147 SLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIG---LGKKTCAKCRC 190 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~---~~~~~CP~Cr~ 190 (340)
+..|.||...-.--..-.|...|+..|+...+. .+.+.||.|..
T Consensus 11 ~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 11 QDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CSSCTTTSCCSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCccCCCCCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 557999987432111226888899999987543 45789999965
No 163
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=71.50 E-value=4.9 Score=32.10 Aligned_cols=57 Identities=21% Similarity=0.366 Sum_probs=38.2
Q ss_pred cccccccCCCCCCcccCCCCcccchhhhhhh----------ccCCCCCCCCCcccCCCCCCCCCccHHHHHHHHHHH
Q 019484 148 LNCSFCMQLPERPVTTPCGHNFCLKCFQKWI----------GLGKKTCAKCRCIIPSKMAGQPRINSTLVAAIRMAK 214 (340)
Q Consensus 148 ~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~----------~~~~~~CP~Cr~~~~~~~~~~~~~n~~l~~~i~~~~ 214 (340)
..|.||.+--.-...-.|-..||..||.+.+ ..+.+.|+.|+. .+...|+.+...+.
T Consensus 58 ~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~----------~pl~~L~~~C~~v~ 124 (129)
T 3ql9_A 58 EQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP----------EPLLDLVTACNSVY 124 (129)
T ss_dssp SSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC----------GGGHHHHHHHHHHH
T ss_pred CcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC----------HHHHHHHHHHHHHH
Confidence 3599998765533344799999999999642 245799999943 23344555555543
No 164
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.09 E-value=0.82 Score=33.16 Aligned_cols=49 Identities=18% Similarity=0.419 Sum_probs=32.0
Q ss_pred CCcccccccCCCCC------------CceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCC
Q 019484 11 GDGMCMRCKETPVE------------EEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDA 64 (340)
Q Consensus 11 ~~~~c~~c~~~~~~------------~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~ 64 (340)
++..|.+|...-.+ +....-..|.+.||..||. .=|..- =.||-|..+-
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~-~Wl~~~----~~CP~CR~~~ 74 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMS-LWVKQN----NRCPLCQQDW 74 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHH-HHTTTC----CBCTTTCCBC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHH-HHHHhC----CCCCCcCCCc
Confidence 36678888875532 2222223688999999999 544432 1799998654
No 165
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.82 E-value=1.8 Score=31.14 Aligned_cols=49 Identities=20% Similarity=0.492 Sum_probs=34.7
Q ss_pred CCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCC
Q 019484 11 GDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDA 64 (340)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~ 64 (340)
.-..|.+|+.--.+ -..|..|...||..||. -=|+... .=.||.|..+-
T Consensus 14 ~i~~C~IC~~~i~~--g~~C~~C~h~fH~~Ci~-kWl~~~~--~~~CP~Cr~~w 62 (74)
T 2ct0_A 14 AVKICNICHSLLIQ--GQSCETCGIRMHLPCVA-KYFQSNA--EPRCPHCNDYW 62 (74)
T ss_dssp SSCBCSSSCCBCSS--SEECSSSCCEECHHHHH-HHSTTCS--SCCCTTTCSCC
T ss_pred CCCcCcchhhHccc--CCccCCCCchhhHHHHH-HHHHhcC--CCCCCCCcCcC
Confidence 34679999986643 36888999999999998 4333221 13599997553
No 166
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.83 E-value=0.94 Score=32.46 Aligned_cols=53 Identities=21% Similarity=0.355 Sum_probs=36.4
Q ss_pred CCCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCC--CCCCCccCCCCCCCCc
Q 019484 9 CNGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESL--ASTLLWECPDCTGDAA 65 (340)
Q Consensus 9 ~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~--~p~~~w~c~~c~~~~~ 65 (340)
-+.+..|.+|...-....+| .|.+.||..||. --+.. ...+.-.||.|.....
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~-~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLSL---DCGHSFCQACLT-ANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBCC---SSSCCBCTTHHH-HHHHHHHHTTSCCCCTTTCCSSC
T ss_pred ccCCCCCCCCCcccCCceeC---CCCCHHHHHHHH-HHHHHhhcCCCCCcCCCCCCccC
Confidence 45678899999977665555 577889999997 32221 0223568999986654
No 167
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=69.74 E-value=4 Score=26.59 Aligned_cols=42 Identities=24% Similarity=0.578 Sum_probs=27.9
Q ss_pred ccccccCCCCCC-cc--cCCCCcccchhhhhhhc---cCCCCCCCCCc
Q 019484 149 NCSFCMQLPERP-VT--TPCGHNFCLKCFQKWIG---LGKKTCAKCRC 190 (340)
Q Consensus 149 ~C~iC~~~~~~p-v~--l~CgH~FC~~Ci~~~~~---~~~~~CP~Cr~ 190 (340)
.|.||...-..- ++ -.|...|...|+..-+. .+.+.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 477887643221 22 26888899999975433 35789999965
No 168
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.57 E-value=1.2 Score=29.52 Aligned_cols=46 Identities=22% Similarity=0.391 Sum_probs=31.6
Q ss_pred CCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCC
Q 019484 10 NGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDC 60 (340)
Q Consensus 10 ~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c 60 (340)
+.+..|.+|...-....+| .|.+.||..||. .-+... ...-.||.|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~-~~~~~~-~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVII---ECGHNFCKACIT-RWWEDL-ERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCC---SSCCCCCHHHHH-HHTTSS-CCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeC---CCCCccCHHHHH-HHHHhc-CCCCCCCCC
Confidence 4677899999877666665 467889999988 443221 245677766
No 169
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.44 E-value=0.8 Score=32.05 Aligned_cols=52 Identities=15% Similarity=0.462 Sum_probs=36.3
Q ss_pred CCCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 9 CNGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 9 ~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
-+.+..|.+|...-....+| .|.+.||..||. .-+. ...+.-.||.|..+..
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~---~CgH~fC~~Ci~-~~~~-~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTI---DCGHNFCLKCIT-QIGE-TSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEEC---TTCCEEEHHHHH-HHCS-SSCSCCCCSSSCCCCC
T ss_pred CccCCEeccCCcccCCeEEc---CCCChhhHHHHH-HHHH-cCCCCCCCCCCCCcCC
Confidence 35678899999876544444 688999999998 4433 1234567999986543
No 170
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.25 E-value=0.53 Score=33.21 Aligned_cols=52 Identities=23% Similarity=0.410 Sum_probs=34.8
Q ss_pred CCCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 9 CNGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 9 ~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
-+.+..|.+|...-.....+.--.|.+.||..||. .-+.. .-.||-|..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~-~~~~~----~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLI-KWLEV----RKVCPLCNMPVL 63 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHH-HHHHH----CSBCTTTCCBCS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHH-HHHHc----CCcCCCcCcccc
Confidence 35678899999875544443222488999999998 43221 127999986654
No 171
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=69.19 E-value=1.4 Score=33.91 Aligned_cols=49 Identities=22% Similarity=0.406 Sum_probs=36.5
Q ss_pred CCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 10 NGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 10 ~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
.++..|.+|...-.....| .|.+.||..||. .-+. .+...||.|.....
T Consensus 13 ~~~~~C~iC~~~~~~p~~~---~CgH~fC~~Ci~-~~~~---~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTL---PCNHTLCKPCFQ-STVE---KASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSSCEEC---TTSCEECHHHHC-CCCC---TTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCceeEc---CCCCHHhHHHHH-HHHh---HCcCCCCCCCcccC
Confidence 4467899999876655555 578899999998 4443 45688999987654
No 172
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=68.98 E-value=0.71 Score=35.53 Aligned_cols=54 Identities=19% Similarity=0.373 Sum_probs=32.8
Q ss_pred CCcccccccCCCCCC---------------ceeeeCCCCCCcccCCCCCCCCCCCC-CCCccCCCCCCCCc
Q 019484 11 GDGMCMRCKETPVEE---------------EQLCCKTCATPWHVACLVRPPESLAS-TLLWECPDCTGDAA 65 (340)
Q Consensus 11 ~~~~c~~c~~~~~~~---------------~~l~c~~c~~~~h~~cl~~p~~~~~p-~~~w~c~~c~~~~~ 65 (340)
.+..|.+|...-... ....--.|.+.||..||. .-|.... ...-.||-|.....
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~-~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLL-AMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHH-HHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHH-HHHHcccCCCCCcCCCCCCccC
Confidence 456899997753221 222244578999999998 5331111 22346999986554
No 173
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=68.40 E-value=4.4 Score=29.87 Aligned_cols=35 Identities=26% Similarity=0.588 Sum_probs=27.8
Q ss_pred CCceeeeCCCC-CCcccCCCCCCCCCCCCCCCccCCCCCC
Q 019484 24 EEEQLCCKTCA-TPWHVACLVRPPESLASTLLWECPDCTG 62 (340)
Q Consensus 24 ~~~~l~c~~c~-~~~h~~cl~~p~~~~~p~~~w~c~~c~~ 62 (340)
.-+||+|..|. .+-|..|.. | ......|.|..|..
T Consensus 43 ~W~L~lC~~Cgs~gtH~~Cs~---l-~~~~~~weC~~C~~ 78 (85)
T 1weq_A 43 RWRLILCATCGSHGTHRDCSS---L-RPNSKKWECNECLP 78 (85)
T ss_dssp TTBCEECSSSCCCEECSGGGT---C-CTTCSCCCCTTTSC
T ss_pred CEEEEeCcccCCchhHHHHhC---C-cCCCCCEECCcCcc
Confidence 35789999997 589999988 2 23466899999984
No 174
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=68.36 E-value=0.5 Score=35.12 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=33.5
Q ss_pred CCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCC
Q 019484 10 NGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDA 64 (340)
Q Consensus 10 ~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~ 64 (340)
+.+..|.+|...-.....+.--.|.+.||..||. .-|.. .-.||-|..+-
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~-~wl~~----~~~CP~Cr~~~ 87 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVS-IWLQK----SGTCPVCRCMF 87 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHH-HHHTT----TCBCTTTCCBS
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHH-HHHHc----CCcCcCcCccC
Confidence 3466799998765444443333488999999998 53332 23799997654
No 175
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=68.28 E-value=2.7 Score=29.66 Aligned_cols=52 Identities=23% Similarity=0.339 Sum_probs=37.2
Q ss_pred CCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCC---CCCCccCCCCCCCCc
Q 019484 10 NGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLA---STLLWECPDCTGDAA 65 (340)
Q Consensus 10 ~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~---p~~~w~c~~c~~~~~ 65 (340)
+++..|.+|...-.+..+| .|.+.||..||. --+... ..+.-.||.|..+..
T Consensus 10 ~~~~~C~IC~~~~~~p~~l---~CgH~fC~~Ci~-~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSL---DCGHSLCRACIT-VSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCEETTTTEECSSCCCC---SSSCCCCHHHHS-CCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred ccCCCCcCCCcccCCeeEC---CCCCHHHHHHHH-HHHHhcccCCCCCCcCCCCCCcCC
Confidence 5678899999876655555 477899999998 544431 134678999987654
No 176
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=67.63 E-value=0.89 Score=32.60 Aligned_cols=53 Identities=19% Similarity=0.291 Sum_probs=36.4
Q ss_pred CCCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCC--CCCCccCCCCCCCCc
Q 019484 9 CNGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLA--STLLWECPDCTGDAA 65 (340)
Q Consensus 9 ~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~--p~~~w~c~~c~~~~~ 65 (340)
-+.+..|.+|...-....+| .|.+.||..||. --+... ..+...||.|..+..
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~-~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVSA---DCNHSFCRACIT-LNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEEC---TTSCCBCHHHHH-HHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CccCCCCcCCChhhCcceeC---CCCCHHHHHHHH-HHHHhccCCCCCCCCCCCCCcCC
Confidence 35678899999876555544 477889999987 332221 234689999986654
No 177
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=66.06 E-value=1.9 Score=31.15 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=38.8
Q ss_pred CCCCCcCCCCCCcccccccCCCC--CCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 1 MAHVIQLPCNGDGMCMRCKETPV--EEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 1 ~~~~~~~~~~~~~~c~~c~~~~~--~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
||...+- -+++..|.+|-..-. +-..+.| .|.+.|+..||. --+. .+...||.|..+..
T Consensus 1 ms~~~~~-~~~~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~-~~~~---~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 1 MSRSPDA-KEDPVECPLCMEPLEIDDINFFPC-TCGYQICRFCWH-RIRT---DENGLCPACRKPYP 61 (78)
T ss_dssp CCSCSCC-CCCCCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHH-HHTT---SSCSBCTTTCCBCS
T ss_pred CCccccc-cccCCcCCccCccCcccccccccc-CCCCCcCHHHHH-HHHh---cCCCCCCCCCCccC
Confidence 5554332 366788999998543 2233444 588899999987 3222 25679999987665
No 178
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=65.03 E-value=2.7 Score=28.82 Aligned_cols=34 Identities=24% Similarity=0.647 Sum_probs=24.5
Q ss_pred CcccccccCCCCCC-----ccc-C--CCCcccchhhhhhhcc
Q 019484 147 SLNCSFCMQLPERP-----VTT-P--CGHNFCLKCFQKWIGL 180 (340)
Q Consensus 147 ~~~C~iC~~~~~~p-----v~l-~--CgH~FC~~Ci~~~~~~ 180 (340)
.-.||-|...+... ++- . |++.||..|...|...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 34699998887743 333 3 8899999998887654
No 179
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=64.15 E-value=2.6 Score=29.99 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=33.8
Q ss_pred CcccccccCCCCCCccc---CCCCcccchhhhhhhc---cCCCCCCCCCcccCC
Q 019484 147 SLNCSFCMQLPERPVTT---PCGHNFCLKCFQKWIG---LGKKTCAKCRCIIPS 194 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l---~CgH~FC~~Ci~~~~~---~~~~~CP~Cr~~~~~ 194 (340)
...|.||......-.++ .|...|...|+..... .+.+.||.|+..+.+
T Consensus 18 ~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 18 IWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 46799998875432233 6888899999875443 247899999876654
No 180
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=63.60 E-value=4.9 Score=29.85 Aligned_cols=46 Identities=17% Similarity=0.456 Sum_probs=32.1
Q ss_pred CCcccccccCCCCCCcccCCCCcccchhhhhhhc---cCCCCCCCCCcc
Q 019484 146 GSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIG---LGKKTCAKCRCI 191 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~---~~~~~CP~Cr~~ 191 (340)
....|.+|...-.--..-.|.-.|...|+.+-+. .+.+.||.|...
T Consensus 24 n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 24 SATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3557999997543222236888899999976554 467899999753
No 181
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=63.53 E-value=16 Score=25.70 Aligned_cols=47 Identities=21% Similarity=0.418 Sum_probs=30.3
Q ss_pred CCcccccccCCCCCCccc--C--CC-Ccccchhhhhhhc-cCCCCCCCCCcccC
Q 019484 146 GSLNCSFCMQLPERPVTT--P--CG-HNFCLKCFQKWIG-LGKKTCAKCRCIIP 193 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv~l--~--Cg-H~FC~~Ci~~~~~-~~~~~CP~Cr~~~~ 193 (340)
+...| ||.......++. . |. ..|+..|+.-... .+.+.||.|+....
T Consensus 15 ~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 15 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp SCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCSS
T ss_pred CCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCcccc
Confidence 35678 898865443222 3 55 5799999873222 35789999976544
No 182
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.79 E-value=1.6 Score=29.30 Aligned_cols=44 Identities=20% Similarity=0.496 Sum_probs=29.2
Q ss_pred CcccccccCCCCCCcccCCCCcccchhhhhhhc---cCCCCCCCCCc
Q 019484 147 SLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIG---LGKKTCAKCRC 190 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~---~~~~~CP~Cr~ 190 (340)
+..|.||...-.--..-.|...|+..|+..-+. .+.+.||.|..
T Consensus 9 ~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 9 EDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 456999987532212237888899999985443 35678888853
No 183
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.14 E-value=0.97 Score=31.06 Aligned_cols=49 Identities=16% Similarity=0.388 Sum_probs=34.9
Q ss_pred CCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 10 NGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 10 ~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
+++..|.+|...-....++ .|.+.||..|+. .-+. .+...||.|..+-.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~-~~~~---~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQT---ECGHRFCESCMA-ALLS---SSSPKCTACQESIV 61 (66)
T ss_dssp CCCEECTTTCCEESSCCCC---SSSCCCCHHHHH-HHHT---TSSCCCTTTCCCCC
T ss_pred CcCCCCCCCChHhcCeeEC---CCCCHHHHHHHH-HHHH---hCcCCCCCCCcCCC
Confidence 5577899999876555554 577889999998 4432 34567999976543
No 184
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=61.82 E-value=4.4 Score=34.05 Aligned_cols=46 Identities=24% Similarity=0.424 Sum_probs=31.7
Q ss_pred CcccccccCCCCCCcccCCCCcccchhhhhhhc---cCCCCCCCCCccc
Q 019484 147 SLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIG---LGKKTCAKCRCII 192 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~---~~~~~CP~Cr~~~ 192 (340)
+-.|.||.+--.--..-.|...|+..|+...+. .+.+.||.|+..-
T Consensus 4 ~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 345999986543222236888899999876544 3578999998654
No 185
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.53 E-value=1.3 Score=30.88 Aligned_cols=49 Identities=20% Similarity=0.322 Sum_probs=34.9
Q ss_pred CCCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 9 CNGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 9 ~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
=.++..|.+|...-....+| .|.+.||..|+. .-+.. ...||-|.....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~---~CgH~fC~~Ci~-~~~~~----~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSL---PCKHVFCYLCVK-GASWL----GKRCALCRQEIP 60 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEE---TTTEEEEHHHHH-HCTTC----SSBCSSSCCBCC
T ss_pred CCCCCCCccCCcccCCCEEc---cCCCHHHHHHHH-HHHHC----CCcCcCcCchhC
Confidence 45678899999876544444 478899999998 44432 268999987654
No 186
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.08 E-value=11 Score=28.14 Aligned_cols=47 Identities=21% Similarity=0.413 Sum_probs=31.0
Q ss_pred CCCcccccccCCCCCCccc---C--CC-Ccccchhhhhhhc-cCCCCCCCCCcccC
Q 019484 145 GGSLNCSFCMQLPERPVTT---P--CG-HNFCLKCFQKWIG-LGKKTCAKCRCIIP 193 (340)
Q Consensus 145 ~~~~~C~iC~~~~~~pv~l---~--Cg-H~FC~~Ci~~~~~-~~~~~CP~Cr~~~~ 193 (340)
.+...| ||....... ++ . |. ..|+..|+.-... .+.+.||.|+....
T Consensus 34 ~e~~yC-iC~~~~~g~-MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCCBCS-TTCCBCCSC-CCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCCS
T ss_pred CCCcEE-ECCCCCCCC-EeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcCC
Confidence 356778 999865443 33 3 55 5799999873221 35789999976543
No 187
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=60.72 E-value=5.2 Score=36.82 Aligned_cols=41 Identities=27% Similarity=0.745 Sum_probs=31.9
Q ss_pred CCCcccccccCCC-----------CCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCC
Q 019484 10 NGDGMCMRCKETP-----------VEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGD 63 (340)
Q Consensus 10 ~~~~~c~~c~~~~-----------~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~ 63 (340)
...+.|.||++.+ .....|.|..|.+.||+.- +.||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R-------------~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVR-------------IKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCT-------------TSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecC-------------cCCcCCCCC
Confidence 5679999999843 1224699999999999963 569999865
No 188
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.74 E-value=0.68 Score=31.51 Aligned_cols=47 Identities=17% Similarity=0.505 Sum_probs=30.7
Q ss_pred CCCCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCC
Q 019484 9 CNGDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDC 60 (340)
Q Consensus 9 ~~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c 60 (340)
-+.+..|.+|...-....+| .|.+.||..||. --+.. ..+.-.||.|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~-~~~~~-~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTI---DCGHNFCLKCIT-QIGET-SCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEEC---TTSSEECHHHHH-HHHHH-CSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEe---CCCCcchHHHHH-HHHHc-CCCCCcCcCC
Confidence 45678899999876655555 678889999987 33221 1123457766
No 189
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=58.13 E-value=2.6 Score=29.11 Aligned_cols=48 Identities=21% Similarity=0.448 Sum_probs=32.7
Q ss_pred CCcccccccCCCC---CCccc--CCCCcccchhhhhhh------ccCCCCCCCCCcccC
Q 019484 146 GSLNCSFCMQLPE---RPVTT--PCGHNFCLKCFQKWI------GLGKKTCAKCRCIIP 193 (340)
Q Consensus 146 ~~~~C~iC~~~~~---~pv~l--~CgH~FC~~Ci~~~~------~~~~~~CP~Cr~~~~ 193 (340)
++..|.||..... ..+++ .|...|...|+...+ ..+.+.|+.|.....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 3567999997643 22332 788889999988643 345789999966443
No 190
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=57.39 E-value=1.4 Score=33.61 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=33.6
Q ss_pred CcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 12 DGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
...|.+|...-....++ .|.+.||..|+. --+.. ..+...||.|..+..
T Consensus 21 ~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~-~~~~~-~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLELIKEPVST---KCDHIFCKFCML-KLLNQ-KKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCCCSSCCBC---TTSCCCCSHHHH-HHHHS-SSSSCCCTTTSCCCC
T ss_pred CCCCcccChhhcCeEEC---CCCCHHHHHHHH-HHHHh-CCCCCCCcCCCCcCC
Confidence 45799999876655555 577899999987 33321 134578999986554
No 191
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=56.72 E-value=7.2 Score=33.04 Aligned_cols=44 Identities=18% Similarity=0.455 Sum_probs=31.0
Q ss_pred ccccccCCCCCCcccCCCCcccchhhhhhhc---cCCCCCCCCCccc
Q 019484 149 NCSFCMQLPERPVTTPCGHNFCLKCFQKWIG---LGKKTCAKCRCII 192 (340)
Q Consensus 149 ~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~---~~~~~CP~Cr~~~ 192 (340)
.|.+|..--..-....|...|+..|+..-+. .+.+.||.|+..-
T Consensus 4 ~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 4 ICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred cCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 5888886554333346888899999975443 4678999998643
No 192
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=56.53 E-value=2.9 Score=29.09 Aligned_cols=46 Identities=22% Similarity=0.434 Sum_probs=31.0
Q ss_pred CcccccccCCCCCCcccCCCCcccchhhhhhhc---cCCCCCCCCCccc
Q 019484 147 SLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIG---LGKKTCAKCRCII 192 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~---~~~~~CP~Cr~~~ 192 (340)
+..|.||.+.-.--..-.|...|...|+...+. .+.+.||.|...-
T Consensus 8 ~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 8 EDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp CCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 557999987532212236888899999985433 4578999996543
No 193
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.82 E-value=18 Score=25.75 Aligned_cols=52 Identities=17% Similarity=0.285 Sum_probs=34.0
Q ss_pred CCcccccccCCCCCCceeeeCCCCCCcccCCCCCC-----CCCCC------CCCCccCCCCCCCCc
Q 019484 11 GDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRP-----PESLA------STLLWECPDCTGDAA 65 (340)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p-----~~~~~------p~~~w~c~~c~~~~~ 65 (340)
....|..|++.-.+.+.+. .=++.||..|+. - +|... -+|.-||..|-....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF~-C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~ 76 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSCFR-CHTCEATLWPGGYEQHPGDGHFYCLQHLPQTD 76 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTTCB-CSSSCCBCCTTSEECCTTTCCCEETTTCCCCC
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCcCE-EcCCCCCcCCCceeEeCcCCEEEChHHHHhhh
Confidence 4568999999876555555 347899998876 2 33321 356777777765443
No 194
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=55.50 E-value=2.6 Score=37.30 Aligned_cols=47 Identities=21% Similarity=0.524 Sum_probs=33.2
Q ss_pred CcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCC
Q 019484 12 DGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGD 63 (340)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~ 63 (340)
-..|.+|++--. .-..|..|+..||..|+. =-+.. .+.=.||.|..+
T Consensus 180 i~~C~iC~~iv~--~g~~C~~C~~~~H~~C~~-~~~~~--~~~~~CP~C~~~ 226 (238)
T 3nw0_A 180 VKICNICHSLLI--QGQSCETCGIRMHLPCVA-KYFQS--NAEPRCPHCNDY 226 (238)
T ss_dssp CCBCTTTCSBCS--SCEECSSSCCEECHHHHH-HHTTT--CSSCBCTTTCCB
T ss_pred CCcCcchhhHHh--CCcccCccChHHHHHHHH-HHHHh--CCCCCCCCCCCC
Confidence 457999998654 348999999999999997 21111 123369999654
No 195
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=55.41 E-value=4.3 Score=34.90 Aligned_cols=45 Identities=24% Similarity=0.385 Sum_probs=31.2
Q ss_pred cccccccCCCCCCcccCCCCcccchhhhhhhc---cCCCCCCCCCccc
Q 019484 148 LNCSFCMQLPERPVTTPCGHNFCLKCFQKWIG---LGKKTCAKCRCII 192 (340)
Q Consensus 148 ~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~---~~~~~CP~Cr~~~ 192 (340)
-.|.+|...-.--..-.|...|+..|+...+. .+.+.||.|+..-
T Consensus 8 ~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 8 DWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45999986543222236888899999876543 4578999998654
No 196
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=55.23 E-value=15 Score=26.98 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=31.0
Q ss_pred cCCCcccccccCCCCCCccc---CCCCcccchhhhhhhc---------------cCCCCCCCCCc
Q 019484 144 FGGSLNCSFCMQLPERPVTT---PCGHNFCLKCFQKWIG---------------LGKKTCAKCRC 190 (340)
Q Consensus 144 ~~~~~~C~iC~~~~~~pv~l---~CgH~FC~~Ci~~~~~---------------~~~~~CP~Cr~ 190 (340)
+..+-.|.||...-.. ..+ -|+-.|...|+.+.-. ...+.|+.|..
T Consensus 12 ~~~D~~C~VC~~~t~~-~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAE-SLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCCSCCCTTTCCCCSS-CCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCCCcccCcccccccc-ceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 3456789999854432 333 4788999999998511 13479999944
No 197
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=54.63 E-value=4.8 Score=30.88 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=20.2
Q ss_pred CCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccC
Q 019484 157 PERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 157 ~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
+..+....||+.|+ ..+. ....||.|+..--
T Consensus 65 v~p~~C~~CG~~F~-----~~~~-kPsrCP~CkSe~I 95 (105)
T 2gmg_A 65 IKPAQCRKCGFVFK-----AEIN-IPSRCPKCKSEWI 95 (105)
T ss_dssp ECCCBBTTTCCBCC-----CCSS-CCSSCSSSCCCCB
T ss_pred EECcChhhCcCeec-----ccCC-CCCCCcCCCCCcc
Confidence 34556678999992 1222 2578999987644
No 198
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=53.99 E-value=3.9 Score=27.75 Aligned_cols=45 Identities=20% Similarity=0.471 Sum_probs=30.0
Q ss_pred CcccccccCCCCCCcccCCCCcccchhhhhhhc---cCCCCCCCCCcc
Q 019484 147 SLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIG---LGKKTCAKCRCI 191 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~---~~~~~CP~Cr~~ 191 (340)
+..|.||...-.--..-.|...|...|+...+. .+.+.||.|...
T Consensus 5 ~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 5 EDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CSSCTTTCCCSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 456999987532111237888899999985443 356889988553
No 199
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=51.57 E-value=4.4 Score=29.97 Aligned_cols=50 Identities=20% Similarity=0.369 Sum_probs=34.5
Q ss_pred CCCcccccccCCCC---CCcc--cCCCCcccchhhhhh-hccCCCCCCCCCcccCC
Q 019484 145 GGSLNCSFCMQLPE---RPVT--TPCGHNFCLKCFQKW-IGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 145 ~~~~~C~iC~~~~~---~pv~--l~CgH~FC~~Ci~~~-~~~~~~~CP~Cr~~~~~ 194 (340)
.++..|.||...-. ..++ -.|.-.|...|+... +..+.+.||.|......
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 45678999997641 1222 268888999999754 33568999999765544
No 200
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=51.48 E-value=2.1 Score=40.64 Aligned_cols=55 Identities=20% Similarity=0.475 Sum_probs=39.2
Q ss_pred CCCCCC---cccccccCCCCCCceeeeC--CCCCCcccCCCCCCCC------CCCCCCCccCCCCCCCCc
Q 019484 7 LPCNGD---GMCMRCKETPVEEEQLCCK--TCATPWHVACLVRPPE------SLASTLLWECPDCTGDAA 65 (340)
Q Consensus 7 ~~~~~~---~~c~~c~~~~~~~~~l~c~--~c~~~~h~~cl~~p~~------~~~p~~~w~c~~c~~~~~ 65 (340)
+..|+| ..|.+|..+ .++++|| .|.+.|...||. =-+ .......|.|=-|...+.
T Consensus 85 f~~D~DG~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~-~n~g~~~~~~i~~~d~W~Cf~C~p~p~ 150 (386)
T 2pv0_B 85 FLYDDDGYQSYCSICCSG---ETLLICGNPDCTRCYCFECVD-SLVGPGTSGKVHAMSNWVCYLCLPSSR 150 (386)
T ss_dssp TCBCSSSSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHH-HHTCTTHHHHHHHCSSCCCTTTSSCCE
T ss_pred cccCCCCCcccceEcCCC---CeEEEeCCCCCCcchHHHHHH-HhcChhHHHHhhccCCceEEEcCCcch
Confidence 334544 457777766 5899999 999999999997 333 112345799999997663
No 201
>1pyl_A Ribonuclease; alpha-beta structure, hydrolase; 1.51A {Streptomyces aureofaciens} SCOP: d.1.1.2 PDB: 1py3_A 3d4a_A* 3d5g_A 3d5i_A* 3dgy_A* 3dh2_A*
Probab=51.17 E-value=30 Score=26.00 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=23.1
Q ss_pred CCcccceecchhhhhhhcccCCCcCCc---------cCCCCCCcEEEEecC
Q 019484 282 GVLVGESWEGRLECRQWGVHYPPVAGI---------AGQSKCGAQSVVLSG 323 (340)
Q Consensus 282 g~~vG~~~~~r~~~~~~g~h~~~~~Gi---------~~~~~~ga~si~~sg 323 (340)
+-.-|+.|.+|. -..|...+. .+....||..||.++
T Consensus 32 ~~~dG~~F~NrE------~~LP~~~~~~y~E~dV~tp~~~~RGa~RIV~g~ 76 (97)
T 1pyl_A 32 YNRDGVVFENRE------SRLPKKGNGYYHEFTVVTPGSNDRGTRRVVTGG 76 (97)
T ss_dssp STTTTEECCCTT------CSSCCCCTTSCEEEECCCTTCSSCCSCEEEECT
T ss_pred CCCCCCeecCCc------CcCCCCCCCeEEEEEeCCCCCCCCCCCEEEECC
Confidence 445677777773 233443333 355678999999987
No 202
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=51.06 E-value=2.6 Score=31.80 Aligned_cols=42 Identities=24% Similarity=0.519 Sum_probs=29.8
Q ss_pred CcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 147 SLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
+..||+|...+..- =++.+|..|-..... ...||.|..++..
T Consensus 32 ~~~CP~Cq~eL~~~----g~~~hC~~C~~~f~~--~a~CPdC~q~Lev 73 (101)
T 2jne_A 32 ELHCPQCQHVLDQD----NGHARCRSCGEFIEM--KALCPDCHQPLQV 73 (101)
T ss_dssp CCBCSSSCSBEEEE----TTEEEETTTCCEEEE--EEECTTTCSBCEE
T ss_pred cccCccCCCcceec----CCEEECccccchhhc--cccCcchhhHHHH
Confidence 38999999877631 134459999776543 4689999988753
No 203
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=50.67 E-value=3.4 Score=30.18 Aligned_cols=40 Identities=23% Similarity=0.558 Sum_probs=26.0
Q ss_pred cccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccC
Q 019484 148 LNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 148 ~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
..||+|...+..-. ++.+|..|-...... ..||.|..++.
T Consensus 3 ~~CP~C~~~l~~~~----~~~~C~~C~~~~~~~--afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERNG----DTAHCETCAKDFSLQ--ALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEECS----SEEECTTTCCEEEEE--EECSSSCSCCC
T ss_pred CCCCCCCCccccCC----CceECccccccCCCc--ccCcchhhHHH
Confidence 67999988776321 244577776654433 37888887764
No 204
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=49.99 E-value=11 Score=28.36 Aligned_cols=43 Identities=14% Similarity=0.289 Sum_probs=28.4
Q ss_pred CcccccccCCCCCCccc---CCCCcccchhhhhhhc--cCCCCCCCCCc
Q 019484 147 SLNCSFCMQLPERPVTT---PCGHNFCLKCFQKWIG--LGKKTCAKCRC 190 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv~l---~CgH~FC~~Ci~~~~~--~~~~~CP~Cr~ 190 (340)
...| ||......-.++ .|...|...|+..... ...+.||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3557 787665544343 6777888889875433 23689999963
No 205
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=48.28 E-value=4.7 Score=29.79 Aligned_cols=47 Identities=19% Similarity=0.456 Sum_probs=33.8
Q ss_pred CcccccccCCCC---CCccc--CCCCcccchhhhhhhc-------cCCCCCCCCCcccC
Q 019484 147 SLNCSFCMQLPE---RPVTT--PCGHNFCLKCFQKWIG-------LGKKTCAKCRCIIP 193 (340)
Q Consensus 147 ~~~C~iC~~~~~---~pv~l--~CgH~FC~~Ci~~~~~-------~~~~~CP~Cr~~~~ 193 (340)
...|.||...-. ..+++ .|...|+..|+...+. .+.+.|+.|.....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 567999998643 33443 7888899999986543 46789999976544
No 206
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=47.65 E-value=11 Score=24.13 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=12.5
Q ss_pred CCCCCCCccCC--CCCCCCc
Q 019484 48 SLASTLLWECP--DCTGDAA 65 (340)
Q Consensus 48 ~~~p~~~w~c~--~c~~~~~ 65 (340)
...-.|||.|+ .|..-..
T Consensus 8 ~~~~~GDW~C~~~~C~~~Nf 27 (45)
T 1n0z_A 8 FRVSDGDWICPDKKCGNVNF 27 (45)
T ss_dssp CSSCSSSCBCSSTTTCCBCC
T ss_pred CCCCCCCcCCCCCCCCCEEc
Confidence 34557999999 7865433
No 207
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=46.18 E-value=17 Score=24.75 Aligned_cols=40 Identities=20% Similarity=0.391 Sum_probs=27.6
Q ss_pred cccccccCCCCCCc---ccCCCCcccchhhhhhhccCCCCCCCC
Q 019484 148 LNCSFCMQLPERPV---TTPCGHNFCLKCFQKWIGLGKKTCAKC 188 (340)
Q Consensus 148 ~~C~iC~~~~~~pv---~l~CgH~FC~~Ci~~~~~~~~~~CP~C 188 (340)
..|-.|...|.... ...|++.||..|=.=.- ..-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiH-e~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVH-DSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTT-TTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHH-hhccCCcCC
Confidence 45989998886543 34799999999943222 224579987
No 208
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=45.62 E-value=2.8 Score=25.39 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=10.7
Q ss_pred CcccccccCCCCCC
Q 019484 147 SLNCSFCMQLPERP 160 (340)
Q Consensus 147 ~~~C~iC~~~~~~p 160 (340)
-|.||+|+..+..+
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 57888888877655
No 209
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=44.98 E-value=2.3 Score=35.07 Aligned_cols=44 Identities=18% Similarity=0.393 Sum_probs=30.6
Q ss_pred CcccccccCCCC---CC--cccCCCCcccchhhhhhhccCCCCCCCCCc
Q 019484 147 SLNCSFCMQLPE---RP--VTTPCGHNFCLKCFQKWIGLGKKTCAKCRC 190 (340)
Q Consensus 147 ~~~C~iC~~~~~---~p--v~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~ 190 (340)
+..|.+|...|. .. +...|.|.+|..|-...-....+.|-+|..
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccccccCCCCcEeeHHHHH
Confidence 568999999764 22 345799999999974322334678888854
No 210
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=44.55 E-value=4.6 Score=29.22 Aligned_cols=33 Identities=27% Similarity=0.549 Sum_probs=22.3
Q ss_pred Cccccc--ccCCCCC-----Cccc------CCCCcccchhhhhhhc
Q 019484 147 SLNCSF--CMQLPER-----PVTT------PCGHNFCLKCFQKWIG 179 (340)
Q Consensus 147 ~~~C~i--C~~~~~~-----pv~l------~CgH~FC~~Ci~~~~~ 179 (340)
..-||- |...+.. .|.= .|++.||..|...|-.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 556876 7665531 2222 5899999999988753
No 211
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=44.42 E-value=2.1 Score=33.81 Aligned_cols=45 Identities=20% Similarity=0.456 Sum_probs=29.7
Q ss_pred CcccccccCCCCCC----cccCCCCcccchhhhhhhccCCCCCCCCCccc
Q 019484 147 SLNCSFCMQLPERP----VTTPCGHNFCLKCFQKWIGLGKKTCAKCRCII 192 (340)
Q Consensus 147 ~~~C~iC~~~~~~p----v~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 192 (340)
...|..|...|..- ..-.||..||..|....... ...|-.|-..+
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~-vRVC~~C~~~~ 67 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG-PRLCLLCQRFR 67 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC-ceECHHHHHHH
Confidence 45799999988632 22479999999998765543 55787775543
No 212
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.33 E-value=4.2 Score=30.33 Aligned_cols=45 Identities=24% Similarity=0.462 Sum_probs=30.4
Q ss_pred CCcccccccCCCCCCccc---CCCCcccchhhhhhhc---cCCCCCCCCCc
Q 019484 146 GSLNCSFCMQLPERPVTT---PCGHNFCLKCFQKWIG---LGKKTCAKCRC 190 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv~l---~CgH~FC~~Ci~~~~~---~~~~~CP~Cr~ 190 (340)
+...|.||...-..-.++ .|...|+..|+..-+. .+.+.||.|..
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 456799998764322222 6888888889875433 45788999954
No 213
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=44.25 E-value=14 Score=34.90 Aligned_cols=46 Identities=20% Similarity=0.524 Sum_probs=33.5
Q ss_pred CCcccccccCCCCCCccc--CCCCcccchhhhhhhc---------cCCCCCCCCCcc
Q 019484 146 GSLNCSFCMQLPERPVTT--PCGHNFCLKCFQKWIG---------LGKKTCAKCRCI 191 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv~l--~CgH~FC~~Ci~~~~~---------~~~~~CP~Cr~~ 191 (340)
.+..|.+|-+--.--..- .|...||..||.+.+. ...+.|-+|.-.
T Consensus 92 ~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 92 YQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 356788988765432333 7889999999998874 246899999754
No 214
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=43.71 E-value=6.3 Score=28.85 Aligned_cols=29 Identities=28% Similarity=0.717 Sum_probs=19.9
Q ss_pred ccccccCCCC-----CCccc-CCCCcccchhhhhh
Q 019484 149 NCSFCMQLPE-----RPVTT-PCGHNFCLKCFQKW 177 (340)
Q Consensus 149 ~C~iC~~~~~-----~pv~l-~CgH~FC~~Ci~~~ 177 (340)
-||-|...+. .+|.= .|++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 4887776543 12333 49999999998877
No 215
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.01 E-value=4.8 Score=28.89 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=35.2
Q ss_pred CCCCcccccccCCCCCCce-eeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 9 CNGDGMCMRCKETPVEEEQ-LCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 9 ~~~~~~c~~c~~~~~~~~~-l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
-++...|.+|...-..... ..--.|.+.||..|+. --+..- .+...||.|.....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~-~~~~~~-~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLE-KLLASS-INGVRCPFCSKITR 67 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHH-HHHHHC-SSCBCCTTTCCCBC
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHH-HHHHcC-CCCcCCCCCCCccc
Confidence 4567789999987654221 1111588999999998 432211 23468999986544
No 216
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=42.94 E-value=14 Score=24.45 Aligned_cols=12 Identities=33% Similarity=0.927 Sum_probs=9.7
Q ss_pred CCccCCCCCCCC
Q 019484 53 LLWECPDCTGDA 64 (340)
Q Consensus 53 ~~w~c~~c~~~~ 64 (340)
.+|.||.|..+.
T Consensus 35 ~dw~CP~Cg~~K 46 (52)
T 1e8j_A 35 DDWACPVCGASK 46 (52)
T ss_dssp TTCCCSSSCCCT
T ss_pred CCCcCCCCCCcH
Confidence 479999998754
No 217
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=42.56 E-value=2.4 Score=34.08 Aligned_cols=44 Identities=23% Similarity=0.352 Sum_probs=28.9
Q ss_pred CcccccccCCCCC-----CcccCCCCcccchhhhhhhc---cCCCCCCCCCc
Q 019484 147 SLNCSFCMQLPER-----PVTTPCGHNFCLKCFQKWIG---LGKKTCAKCRC 190 (340)
Q Consensus 147 ~~~C~iC~~~~~~-----pv~l~CgH~FC~~Ci~~~~~---~~~~~CP~Cr~ 190 (340)
...|.+|...|-- -+...|.|.+|..|-..... ...+.|-+|+.
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 5679999998831 13457888888888664311 22467777744
No 218
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.36 E-value=14 Score=26.46 Aligned_cols=42 Identities=17% Similarity=0.460 Sum_probs=28.3
Q ss_pred ccccccCCCCCCccc---CCCCcccchhhhhhhc---cC-CCCCCCCCc
Q 019484 149 NCSFCMQLPERPVTT---PCGHNFCLKCFQKWIG---LG-KKTCAKCRC 190 (340)
Q Consensus 149 ~C~iC~~~~~~pv~l---~CgH~FC~~Ci~~~~~---~~-~~~CP~Cr~ 190 (340)
.|.||...-..-.+| .|...|+..|+..-+. .+ .+.||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 678888643222222 6888899999986443 35 689999964
No 219
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=42.36 E-value=10 Score=22.01 Aligned_cols=28 Identities=32% Similarity=0.763 Sum_probs=21.7
Q ss_pred cccccccCCCCCCceeeeCCCCCCcccCCC
Q 019484 13 GMCMRCKETPVEEEQLCCKTCATPWHVACL 42 (340)
Q Consensus 13 ~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl 42 (340)
..|..|++.--+.+.+..+ ++.||-.|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~--g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCL--DKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSS--SSCCCGGGC
T ss_pred CcCCccCCEEecceeEEEC--CeEecccCC
Confidence 4788999987766777776 488998885
No 220
>1lni_A RNAse SA, guanyl-specific ribonuclease SA; hydrolase; 1.00A {Streptomyces aureofaciens} SCOP: d.1.1.2 PDB: 1c54_A 1ay7_A 1rge_A* 1rgf_A 1rgg_A 1rgh_A 1t2h_A 1i70_A 1i8v_A 1ynv_X 1ucl_A 1ucj_A 1uck_A 1uci_A 1t2i_A 1box_A 1gmp_A* 1gmq_A 1gmr_A* 1rsn_A* ...
Probab=42.33 E-value=59 Score=24.35 Aligned_cols=15 Identities=13% Similarity=0.392 Sum_probs=12.3
Q ss_pred CCCCCCcEEEEecCc
Q 019484 310 GQSKCGAQSVVLSGG 324 (340)
Q Consensus 310 ~~~~~ga~si~~sg~ 324 (340)
|....||..||.++.
T Consensus 61 g~~~RGa~RIV~g~~ 75 (96)
T 1lni_A 61 GARTRGTRRIITGEA 75 (96)
T ss_dssp TCSSCCSCEEEEESS
T ss_pred CCCCCCCCEEEECCC
Confidence 556789999999874
No 221
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=42.16 E-value=14 Score=28.61 Aligned_cols=47 Identities=17% Similarity=0.247 Sum_probs=35.4
Q ss_pred CcccccccCCCC---CCcccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 147 SLNCSFCMQLPE---RPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 147 ~~~C~iC~~~~~---~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
-|.|..|...|. ......=|..||..|..+.+.. ...|..|..+|..
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCc
Confidence 488999999886 2344466788999999887643 2379999988875
No 222
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=40.92 E-value=15 Score=30.34 Aligned_cols=46 Identities=22% Similarity=0.492 Sum_probs=32.1
Q ss_pred CCcccccccCCCCCCccc--CCCCcccchhhhhhhcc---------CCCCCCCCCcc
Q 019484 146 GSLNCSFCMQLPERPVTT--PCGHNFCLKCFQKWIGL---------GKKTCAKCRCI 191 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv~l--~CgH~FC~~Ci~~~~~~---------~~~~CP~Cr~~ 191 (340)
.+..|.||-+--.--..- .|...||..||...+.. ..+.|-+|.-.
T Consensus 78 ~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 78 YQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp SBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred CcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 357899988754322222 58889999999987653 35789999643
No 223
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=40.58 E-value=19 Score=26.05 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=23.9
Q ss_pred CCcccccccCCCCCCc----ccCCCCcccchhhhhh
Q 019484 146 GSLNCSFCMQLPERPV----TTPCGHNFCLKCFQKW 177 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv----~l~CgH~FC~~Ci~~~ 177 (340)
+...|.+|...|..-. .-.||..||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3567999999886322 2479999999998754
No 224
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=39.08 E-value=20 Score=27.38 Aligned_cols=45 Identities=24% Similarity=0.363 Sum_probs=31.3
Q ss_pred CCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCC
Q 019484 11 GDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDA 64 (340)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~ 64 (340)
....|.+|...-....+|. .|.+.|+..||. --+. -.||.|....
T Consensus 21 ~~~~C~IC~~~~~~pv~~~--~CgH~fC~~Ci~-~~~~------~~CP~Cr~~~ 65 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLG--GCEHIFCSNCVS-DCIG------TGCPVCYTPA 65 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCC--SSSCCBCTTTGG-GGTT------TBCSSSCCBC
T ss_pred hCCCCCCCChHhhCccEeC--CCCCHHHHHHHH-HHhc------CCCcCCCCcC
Confidence 4567999998776555552 356888888888 3322 4699998654
No 225
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=38.68 E-value=2.5 Score=33.73 Aligned_cols=46 Identities=28% Similarity=0.522 Sum_probs=31.8
Q ss_pred CcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 12 DGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
+..|.+|...-.+..+| .|.+.||..|+. --+.. .-.||.|..+-.
T Consensus 53 ~~~C~iC~~~~~~~~~~---~CgH~fc~~Ci~-~~~~~----~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTL---NCAHSFCSYCIN-EWMKR----KIECPICRKDIK 98 (138)
T ss_dssp HSBCTTTCSBCSSEEEE---TTSCEEEHHHHH-HHTTT----CSBCTTTCCBCC
T ss_pred cCCCcccCcccCCceEC---CCCCCccHHHHH-HHHHc----CCcCCCCCCcCC
Confidence 45799999876555555 467899999987 43322 235999986554
No 226
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=38.66 E-value=15 Score=26.45 Aligned_cols=42 Identities=19% Similarity=0.502 Sum_probs=26.6
Q ss_pred ccccccCCCCCCccc---CCCCcccchhhhhhhc---cCC-CCCCCCCc
Q 019484 149 NCSFCMQLPERPVTT---PCGHNFCLKCFQKWIG---LGK-KTCAKCRC 190 (340)
Q Consensus 149 ~C~iC~~~~~~pv~l---~CgH~FC~~Ci~~~~~---~~~-~~CP~Cr~ 190 (340)
.|.||...-..-.+| .|...|...|+...+. .+. +.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466666544322333 5777888999886544 345 89999974
No 227
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=38.53 E-value=16 Score=28.68 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=23.2
Q ss_pred CcccccccCCCCCC----cccCCCCcccchhhhhh
Q 019484 147 SLNCSFCMQLPERP----VTTPCGHNFCLKCFQKW 177 (340)
Q Consensus 147 ~~~C~iC~~~~~~p----v~l~CgH~FC~~Ci~~~ 177 (340)
...|.+|...|..- -.-.||+.||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 35799999988632 22479999999997654
No 228
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.77 E-value=20 Score=25.88 Aligned_cols=31 Identities=26% Similarity=0.505 Sum_probs=22.8
Q ss_pred CcccccccCCCCCCc----ccCCCCcccchhhhhh
Q 019484 147 SLNCSFCMQLPERPV----TTPCGHNFCLKCFQKW 177 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv----~l~CgH~FC~~Ci~~~ 177 (340)
...|.+|...|..-. .-.||..||..|....
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 457999999886322 2479999999997643
No 229
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=37.59 E-value=21 Score=25.71 Aligned_cols=31 Identities=26% Similarity=0.549 Sum_probs=23.3
Q ss_pred CcccccccCCCCCCc----ccCCCCcccchhhhhh
Q 019484 147 SLNCSFCMQLPERPV----TTPCGHNFCLKCFQKW 177 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv----~l~CgH~FC~~Ci~~~ 177 (340)
...|.+|...|..-. .-.||..||..|....
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 457999999886321 2479999999998754
No 230
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=36.84 E-value=17 Score=25.36 Aligned_cols=29 Identities=14% Similarity=0.119 Sum_probs=19.1
Q ss_pred CCcccccccCCC---CCCceeeeCCCCCCccc
Q 019484 11 GDGMCMRCKETP---VEEEQLCCKTCATPWHV 39 (340)
Q Consensus 11 ~~~~c~~c~~~~---~~~~~l~c~~c~~~~h~ 39 (340)
+-.+|.+|+..- ..+..|.|..|...|=+
T Consensus 9 eiL~CP~ck~~L~~~~~~g~LvC~~c~~~YPI 40 (67)
T 2jny_A 9 EVLACPKDKGPLRYLESEQLLVNERLNLAYRI 40 (67)
T ss_dssp CCCBCTTTCCBCEEETTTTEEEETTTTEEEEE
T ss_pred HHhCCCCCCCcCeEeCCCCEEEcCCCCccccC
Confidence 456788888742 23456778877777744
No 231
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=36.57 E-value=20 Score=26.27 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=23.1
Q ss_pred CcccccccCCCCCCc----ccCCCCcccchhhhhh
Q 019484 147 SLNCSFCMQLPERPV----TTPCGHNFCLKCFQKW 177 (340)
Q Consensus 147 ~~~C~iC~~~~~~pv----~l~CgH~FC~~Ci~~~ 177 (340)
...|.+|...|..-. .-.||..||..|....
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 446999999876332 2479999999998654
No 232
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=36.30 E-value=2.3 Score=33.22 Aligned_cols=48 Identities=21% Similarity=0.426 Sum_probs=33.6
Q ss_pred CCcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 11 GDGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
.+..|.+|...-.....| .|.+.||..||. .-+. .+...||-|..+-.
T Consensus 51 ~~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~-~~~~---~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITT---VCQHNVCKDCLD-RSFR---AQVFSCPACRYDLG 98 (124)
T ss_dssp HHTBCTTTSSBCSSEEEC---TTSCEEEHHHHH-HHHH---TTCCBCTTTCCBCC
T ss_pred cCCCCCcCChHHcCcEEe---eCCCcccHHHHH-HHHh---HCcCCCCCCCccCC
Confidence 346799999876554445 678999999997 4332 23348999986554
No 233
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=36.02 E-value=5 Score=23.47 Aligned_cols=14 Identities=21% Similarity=0.631 Sum_probs=11.2
Q ss_pred CCCCccCCCCCCCC
Q 019484 51 STLLWECPDCTGDA 64 (340)
Q Consensus 51 p~~~w~c~~c~~~~ 64 (340)
-+|+|-|-+|..+.
T Consensus 15 regdwcchkcvpeg 28 (36)
T 4b2u_A 15 REGDWCCHKCVPEG 28 (36)
T ss_dssp GGCCSSSSEEEEET
T ss_pred CccCeeeecccccC
Confidence 37999999998543
No 234
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=35.13 E-value=10 Score=28.72 Aligned_cols=13 Identities=31% Similarity=1.068 Sum_probs=11.2
Q ss_pred cccchhhhhhhcc
Q 019484 168 NFCLKCFQKWIGL 180 (340)
Q Consensus 168 ~FC~~Ci~~~~~~ 180 (340)
.||+.|+.+|...
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999873
No 235
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=34.93 E-value=10 Score=28.64 Aligned_cols=12 Identities=42% Similarity=1.367 Sum_probs=10.8
Q ss_pred cccchhhhhhhc
Q 019484 168 NFCLKCFQKWIG 179 (340)
Q Consensus 168 ~FC~~Ci~~~~~ 179 (340)
.||+.|+.+|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999987
No 236
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=34.77 E-value=2.8 Score=34.49 Aligned_cols=48 Identities=21% Similarity=0.497 Sum_probs=33.4
Q ss_pred CcccccccCCCCCCceeeeCCCCCCcccCCCCCCCCCCCCCCCccCCCCCCCCc
Q 019484 12 DGMCMRCKETPVEEEQLCCKTCATPWHVACLVRPPESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~~~~~p~~~w~c~~c~~~~~ 65 (340)
+..|.+|...-.. ....-.|.+.||..|+. --+. .+...||.|..+..
T Consensus 54 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~-~~~~---~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 54 ELMCPICLDMLKN--TMTTKECLHRFCADCII-TALR---SGNKECPTCRKKLV 101 (165)
T ss_dssp HHBCTTTSSBCSS--EEEETTTCCEEEHHHHH-HHHH---TTCCBCTTTCCBCC
T ss_pred CCCCcccChHhhC--cCEeCCCCChhHHHHHH-HHHH---hCcCCCCCCCCcCC
Confidence 4579999886544 33444788999999998 4332 34567999986653
No 237
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=34.54 E-value=17 Score=26.73 Aligned_cols=32 Identities=25% Similarity=0.475 Sum_probs=23.6
Q ss_pred CcccccccCCCCCC----cccCCCCcccchhhhhhh
Q 019484 147 SLNCSFCMQLPERP----VTTPCGHNFCLKCFQKWI 178 (340)
Q Consensus 147 ~~~C~iC~~~~~~p----v~l~CgH~FC~~Ci~~~~ 178 (340)
...|.+|...|..- ....||+.||..|.....
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 45699999877632 224799999999987643
No 238
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=33.63 E-value=23 Score=24.84 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=22.3
Q ss_pred cccccccCCCCCCc----ccCCCCcccchhhhhh
Q 019484 148 LNCSFCMQLPERPV----TTPCGHNFCLKCFQKW 177 (340)
Q Consensus 148 ~~C~iC~~~~~~pv----~l~CgH~FC~~Ci~~~ 177 (340)
..|.+|...|..-. .-.||..||..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 36999998876321 2479999999997643
No 239
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=33.53 E-value=20 Score=26.08 Aligned_cols=38 Identities=21% Similarity=0.476 Sum_probs=21.7
Q ss_pred ceeeeCCCCCCcccCC-----CCCCC---CCCCCCCCccCCCCCCCCc
Q 019484 26 EQLCCKTCATPWHVAC-----LVRPP---ESLASTLLWECPDCTGDAA 65 (340)
Q Consensus 26 ~~l~c~~c~~~~h~~c-----l~~p~---~~~~p~~~w~c~~c~~~~~ 65 (340)
..-.|..|.--|--.= -. || ...+| .+|.||.|..+..
T Consensus 26 ~~y~C~vCGyvYD~~~Gdp~~gI-~pGT~fedlP-ddW~CPvCga~K~ 71 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEALGWPEDGI-AAGTRWDDIP-DDWSCPDCGAAKS 71 (81)
T ss_dssp CEEEETTTCCEEETTTCBTTTTB-CTTCCTTTSC-TTCCCTTTCCCGG
T ss_pred ceEEeCCCCEEEcCCcCCcccCc-CCCCChhHCC-CCCcCCCCCCCHH
Confidence 4577888876654211 11 12 22343 3799999987543
No 240
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=33.33 E-value=20 Score=27.61 Aligned_cols=46 Identities=17% Similarity=0.349 Sum_probs=34.5
Q ss_pred CCcccccccCCCCCC-cccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 146 GSLNCSFCMQLPERP-VTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 146 ~~~~C~iC~~~~~~p-v~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
+-|.|..|...|... ....=|..||..|..+.. ...|..|..+|..
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH---AVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS---CCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc---CccCcccCCcCCc
Confidence 358899999988753 334567889999987655 3479999998874
No 241
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=30.70 E-value=50 Score=21.08 Aligned_cols=32 Identities=22% Similarity=0.608 Sum_probs=27.1
Q ss_pred CCcccccccCCCCCCceeeeCCCCCCcccCCCCC
Q 019484 11 GDGMCMRCKETPVEEEQLCCKTCATPWHVACLVR 44 (340)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~ 44 (340)
....|.+|++.-- +-|.|..|....|-.|+..
T Consensus 13 ~pt~C~~C~~~l~--qG~~C~~C~~~~H~~C~~~ 44 (52)
T 1faq_A 13 KLAFCDICQKFLL--NGFRCQTCGYKFHEHCSTK 44 (52)
T ss_dssp SCEECTTSSSEEC--SEEECTTTTCCBCSTTSSS
T ss_pred CCcCCCCcccccc--cCCEeCCCCCeEChhHHhh
Confidence 4567889988654 7899999999999999983
No 242
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=30.62 E-value=26 Score=25.65 Aligned_cols=45 Identities=18% Similarity=0.375 Sum_probs=33.3
Q ss_pred CCcccccccCCCCCC-cccCCCCcccchhhhhhhccCCCCCCCCCcccC
Q 019484 146 GSLNCSFCMQLPERP-VTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 146 ~~~~C~iC~~~~~~p-v~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
+=|.|..|...|... ....=|..||..|..+.+ ...|..|..+|.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~ 77 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRED---SPKCKGCFKAIV 77 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCC---CCBCSSSCCBCC
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhhc---CCccccCCCccc
Confidence 458899999888643 233567789999976544 357999998886
No 243
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=30.37 E-value=39 Score=27.53 Aligned_cols=45 Identities=29% Similarity=0.501 Sum_probs=31.6
Q ss_pred CCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccC
Q 019484 146 GSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
+-|.|..|...|.......=|..||..|..+.+. ..|..|...|.
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~---~~C~~C~~~I~ 76 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG---TKCAACQLGIP 76 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS---CBCTTTCCBCC
T ss_pred ccCccCCCCCcCCCCCcccCCeeeeccccccccc---ccccccccccC
Confidence 4588999988887543345577789888876553 36777777665
No 244
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=30.34 E-value=16 Score=26.90 Aligned_cols=31 Identities=29% Similarity=0.689 Sum_probs=23.0
Q ss_pred CcccccccCCCCCCceeeeCC--CCCCcccCCCC
Q 019484 12 DGMCMRCKETPVEEEQLCCKT--CATPWHVACLV 43 (340)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~--c~~~~h~~cl~ 43 (340)
...|.+|+... ....+-|.. |.+.||..|-.
T Consensus 17 ~l~C~iC~~~~-~GAciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 17 KLTCYLCKQKG-VGASIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCCBTTTTBCC-SSCEEECSCTTTCCEEEHHHHH
T ss_pred cCCCcCCCCCC-CcEeEecCCCCCCCcCcHHHHH
Confidence 46788997642 246678875 99999999954
No 245
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.78 E-value=28 Score=24.12 Aligned_cols=30 Identities=27% Similarity=0.610 Sum_probs=23.5
Q ss_pred CcccccccCCCCCCceeeeCCCCCCcccCCCC
Q 019484 12 DGMCMRCKETPVEEEQLCCKTCATPWHVACLV 43 (340)
Q Consensus 12 ~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~ 43 (340)
..+|..|+..-.+.+.+.- -++.||..|+.
T Consensus 9 ~~~C~~C~~~I~~~~~v~a--~~~~~H~~CF~ 38 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS--LGKDWHKFCLK 38 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE--TTEEEETTTCB
T ss_pred CCCCcCCCCEeECCeEEEE--CCeEeeCCCCC
Confidence 4679999998876666653 46899999887
No 246
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=27.53 E-value=22 Score=31.08 Aligned_cols=42 Identities=19% Similarity=0.518 Sum_probs=25.3
Q ss_pred ccccccCCCCCCcc---cCCCCcccchhhhhhhc---cC-CCCCCCCCc
Q 019484 149 NCSFCMQLPERPVT---TPCGHNFCLKCFQKWIG---LG-KKTCAKCRC 190 (340)
Q Consensus 149 ~C~iC~~~~~~pv~---l~CgH~FC~~Ci~~~~~---~~-~~~CP~Cr~ 190 (340)
.|.+|...-..-.+ -.|...|+..|+.+-+. .+ .+.||.|..
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 68888763222122 26888888999886544 35 688999964
No 247
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=27.43 E-value=35 Score=28.15 Aligned_cols=46 Identities=26% Similarity=0.437 Sum_probs=29.9
Q ss_pred CCcccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 146 GSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 146 ~~~~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
+-|.|..|...|.......=|..||..|..+.+ ...|..|...|..
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f---~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF---GTKCAACQLGIPP 131 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHHTT---SCCCTTTCCCCCS
T ss_pred ccCccCCCCCccCCCceeECCEeeecCcccccc---ccccccCCCccCC
Confidence 347788887777643333445667888876654 3468888877653
No 248
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=27.20 E-value=17 Score=26.78 Aligned_cols=33 Identities=21% Similarity=0.500 Sum_probs=26.9
Q ss_pred cccccccCCCCCCceeeeCCCCCCcccCCCCCCC
Q 019484 13 GMCMRCKETPVEEEQLCCKTCATPWHVACLVRPP 46 (340)
Q Consensus 13 ~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~ 46 (340)
-.|.+|++.. ....-.|..|+-..|+.|...|+
T Consensus 48 ~~C~~C~~~~-~~~~Y~C~~C~f~lH~~Ca~~p~ 80 (89)
T 1v5n_A 48 YTCDKCEEEG-TIWSYHCDECDFDLHAKCALNED 80 (89)
T ss_dssp CCCTTTSCCC-CSCEEECTTTCCCCCHHHHHCSS
T ss_pred eEeCCCCCcC-CCcEEEcCCCCCeEcHHhcCCCC
Confidence 5688999874 46779999999999999987343
No 249
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=26.56 E-value=36 Score=21.80 Aligned_cols=27 Identities=19% Similarity=0.522 Sum_probs=16.8
Q ss_pred ccccccC----CCCCCceeeeCCCCCCcccC
Q 019484 14 MCMRCKE----TPVEEEQLCCKTCATPWHVA 40 (340)
Q Consensus 14 ~c~~c~~----~~~~~~~l~c~~c~~~~h~~ 40 (340)
+|..|+. -+.....|.|..|...|--.
T Consensus 7 ~CP~C~~~~l~~d~~~gelvC~~CG~v~~e~ 37 (50)
T 1pft_A 7 VCPACESAELIYDPERGEIVCAKCGYVIEEN 37 (50)
T ss_dssp SCTTTSCCCEEEETTTTEEEESSSCCBCCCC
T ss_pred eCcCCCCcceEEcCCCCeEECcccCCccccc
Confidence 5778866 22344558888887766443
No 250
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=25.81 E-value=33 Score=29.42 Aligned_cols=32 Identities=25% Similarity=0.432 Sum_probs=23.6
Q ss_pred CCcccccccCCCCCC----cccCCCCcccchhhhhh
Q 019484 146 GSLNCSFCMQLPERP----VTTPCGHNFCLKCFQKW 177 (340)
Q Consensus 146 ~~~~C~iC~~~~~~p----v~l~CgH~FC~~Ci~~~ 177 (340)
+...|.+|...|.-- -.-.||+.||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 346899999888632 12479999999997654
No 251
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=25.72 E-value=29 Score=26.78 Aligned_cols=48 Identities=21% Similarity=0.469 Sum_probs=35.0
Q ss_pred CCcccccccCCCCC---CcccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 146 GSLNCSFCMQLPER---PVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 146 ~~~~C~iC~~~~~~---pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
+-|.|..|...|.. +....=|..||..|..+.+.. ...|..|..+|..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC-CEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC-ccChhhcCCccCc
Confidence 46899999988852 344456778999998876542 2379999888763
No 252
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=25.18 E-value=26 Score=24.60 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=14.4
Q ss_pred cccccccCCC---CCCceeeeCCCCCCccc
Q 019484 13 GMCMRCKETP---VEEEQLCCKTCATPWHV 39 (340)
Q Consensus 13 ~~c~~c~~~~---~~~~~l~c~~c~~~~h~ 39 (340)
.+|.+|+..- ..+..|.|..|...|=+
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (69)
T 2pk7_A 9 LACPICKGPLKLSADKTELISKGAGLAYPI 38 (69)
T ss_dssp CCCTTTCCCCEECTTSSEEEETTTTEEEEE
T ss_pred eeCCCCCCcCeEeCCCCEEEcCCCCcEecC
Confidence 4667776532 22344666666555533
No 253
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=25.12 E-value=28 Score=30.12 Aligned_cols=31 Identities=29% Similarity=0.566 Sum_probs=23.3
Q ss_pred CcccccccCCCCCC----cccCCCCcccchhhhhh
Q 019484 147 SLNCSFCMQLPERP----VTTPCGHNFCLKCFQKW 177 (340)
Q Consensus 147 ~~~C~iC~~~~~~p----v~l~CgH~FC~~Ci~~~ 177 (340)
...|.+|...|.-- -.-.||..||..|....
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 45899999877632 22479999999998754
No 254
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=24.71 E-value=25 Score=24.59 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=12.6
Q ss_pred cccccccCCC---CCCceeeeCCCCCCc
Q 019484 13 GMCMRCKETP---VEEEQLCCKTCATPW 37 (340)
Q Consensus 13 ~~c~~c~~~~---~~~~~l~c~~c~~~~ 37 (340)
.+|.+|+..- ..+..|.|..|...|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 3566666532 223445555555555
No 255
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=24.50 E-value=26 Score=24.30 Aligned_cols=28 Identities=25% Similarity=0.635 Sum_probs=21.5
Q ss_pred ccccccCCCCCCceeeeCCCCCCcccCCCC
Q 019484 14 MCMRCKETPVEEEQLCCKTCATPWHVACLV 43 (340)
Q Consensus 14 ~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~ 43 (340)
+|..|+..-.+.+.+.-. ++.||..|+.
T Consensus 2 ~C~~C~~~I~~~~~v~a~--~~~~H~~CF~ 29 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSL--GKDWHRPCLK 29 (76)
T ss_dssp BCTTTSSBCCGGGEEEET--TEEEETTTCB
T ss_pred cCCCCCCEEECceEEEEC--CccccCCCCC
Confidence 588888877656666554 7899999988
No 256
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=24.30 E-value=26 Score=24.49 Aligned_cols=27 Identities=11% Similarity=0.255 Sum_probs=14.8
Q ss_pred cccccccCCC---CCCceeeeCCCCCCccc
Q 019484 13 GMCMRCKETP---VEEEQLCCKTCATPWHV 39 (340)
Q Consensus 13 ~~c~~c~~~~---~~~~~l~c~~c~~~~h~ 39 (340)
.+|.+|+..- ..+..|.|..|...|=+
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (68)
T 2jr6_A 9 LVCPVTKGRLEYHQDKQELWSRQAKLAYPI 38 (68)
T ss_dssp CBCSSSCCBCEEETTTTEEEETTTTEEEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEecC
Confidence 4677777632 22345666666655543
No 257
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=24.27 E-value=26 Score=24.68 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=15.1
Q ss_pred cccccccCCC---CCCceeeeCCCCCCccc
Q 019484 13 GMCMRCKETP---VEEEQLCCKTCATPWHV 39 (340)
Q Consensus 13 ~~c~~c~~~~---~~~~~l~c~~c~~~~h~ 39 (340)
.+|.+|+..- ..+..|.|..|...|=+
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (70)
T 2js4_A 9 LVCPVCKGRLEFQRAQAELVCNADRLAFPV 38 (70)
T ss_dssp CBCTTTCCBEEEETTTTEEEETTTTEEEEE
T ss_pred eECCCCCCcCEEeCCCCEEEcCCCCceecC
Confidence 4677777632 22345666666666543
No 258
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.82 E-value=75 Score=22.72 Aligned_cols=31 Identities=23% Similarity=0.574 Sum_probs=24.5
Q ss_pred CCcccccccCCCCCCceeeeCCCCCCcccCCCC
Q 019484 11 GDGMCMRCKETPVEEEQLCCKTCATPWHVACLV 43 (340)
Q Consensus 11 ~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~ 43 (340)
....|..|+..-.+.+.+. .-++.||..|+.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~--a~~~~~H~~CF~ 44 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLL--ANQQVFHISCFR 44 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEE--CSSSEEETTTCB
T ss_pred CCCcCccCCCccCCceeEE--ECCCEECCCCCe
Confidence 4678999999887666654 457899999988
No 259
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.81 E-value=34 Score=22.65 Aligned_cols=15 Identities=27% Similarity=0.640 Sum_probs=11.4
Q ss_pred CCCCCCccCCCCCCC
Q 019484 49 LASTLLWECPDCTGD 63 (340)
Q Consensus 49 ~~p~~~w~c~~c~~~ 63 (340)
..+.+.|.|+.|...
T Consensus 6 ~~~~~~W~C~~CT~~ 20 (53)
T 2d9g_A 6 SGDEGYWDCSVCTFR 20 (53)
T ss_dssp SSCCCCEECSSSCCE
T ss_pred CCCCCCcCCCCCccC
Confidence 346788999999643
No 260
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=23.78 E-value=17 Score=34.46 Aligned_cols=47 Identities=19% Similarity=0.310 Sum_probs=0.0
Q ss_pred CCcccccccCCCCCC----cccCCCCcccchhhhhhhc------cCCCCCCCCCccc
Q 019484 146 GSLNCSFCMQLPERP----VTTPCGHNFCLKCFQKWIG------LGKKTCAKCRCII 192 (340)
Q Consensus 146 ~~~~C~iC~~~~~~p----v~l~CgH~FC~~Ci~~~~~------~~~~~CP~Cr~~~ 192 (340)
+...|.+|...|..- ....||+.||..|...... .....|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 356799999877622 2347999999999875432 1134666664433
No 261
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.73 E-value=49 Score=23.27 Aligned_cols=32 Identities=31% Similarity=0.709 Sum_probs=23.8
Q ss_pred CCCcccccccCCCCCCceeeeCCCCCCcccCCCC
Q 019484 10 NGDGMCMRCKETPVEEEQLCCKTCATPWHVACLV 43 (340)
Q Consensus 10 ~~~~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~ 43 (340)
.....|..|+..-.+.+.+.- =++.||..|+.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a--~~~~wH~~CF~ 44 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLA--LDKQWHVSCFK 44 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEE--TTEEECTTTCB
T ss_pred CCCCCCcCcCCeeCCCeEEEE--CCcccccccCC
Confidence 456789999998765555543 36789999988
No 262
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=22.05 E-value=28 Score=22.37 Aligned_cols=12 Identities=33% Similarity=0.739 Sum_probs=9.2
Q ss_pred CCccCCCCCCCC
Q 019484 53 LLWECPDCTGDA 64 (340)
Q Consensus 53 ~~w~c~~c~~~~ 64 (340)
.+|.||.|..+.
T Consensus 29 ~dw~CP~Cg~~k 40 (46)
T 6rxn_A 29 DDWCCPVCGVSK 40 (46)
T ss_dssp TTCBCTTTCCBG
T ss_pred CCCcCcCCCCcH
Confidence 359999998643
No 263
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=21.61 E-value=55 Score=21.80 Aligned_cols=30 Identities=20% Similarity=0.497 Sum_probs=20.1
Q ss_pred CCcccccccCC-CCCCceeeeC--CCCCCcccC
Q 019484 11 GDGMCMRCKET-PVEEEQLCCK--TCATPWHVA 40 (340)
Q Consensus 11 ~~~~c~~c~~~-~~~~~~l~c~--~c~~~~h~~ 40 (340)
+-.+|.+|+.. .-.+..|.|. .|...|=+.
T Consensus 9 ~iL~CP~c~~~L~~~~~~L~C~~~~c~~~YPI~ 41 (56)
T 2kpi_A 9 EILACPACHAPLEERDAELICTGQDCGLAYPVR 41 (56)
T ss_dssp TSCCCSSSCSCEEEETTEEEECSSSCCCEEEEE
T ss_pred hheeCCCCCCcceecCCEEEcCCcCCCcEEeeE
Confidence 34678899875 2223668888 788877543
No 264
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=21.51 E-value=42 Score=23.55 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=10.3
Q ss_pred CCccCCCCCCCCc
Q 019484 53 LLWECPDCTGDAA 65 (340)
Q Consensus 53 ~~w~c~~c~~~~~ 65 (340)
.+|.||.|..+..
T Consensus 39 ddw~CP~Cga~K~ 51 (70)
T 1dx8_A 39 DSFMCPACRSPKN 51 (70)
T ss_dssp TTCBCTTTCCBGG
T ss_pred CCCcCCCCCCCHH
Confidence 3799999987654
No 265
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=20.76 E-value=35 Score=22.73 Aligned_cols=12 Identities=33% Similarity=0.728 Sum_probs=9.4
Q ss_pred CCccCCCCCCCC
Q 019484 53 LLWECPDCTGDA 64 (340)
Q Consensus 53 ~~w~c~~c~~~~ 64 (340)
.+|.||.|....
T Consensus 35 ~dw~CP~Cg~~K 46 (54)
T 4rxn_A 35 DDWVCPLCGVGK 46 (54)
T ss_dssp TTCBCTTTCCBG
T ss_pred CCCcCcCCCCcH
Confidence 469999998643
No 266
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=20.48 E-value=63 Score=20.87 Aligned_cols=32 Identities=25% Similarity=0.636 Sum_probs=26.4
Q ss_pred cccccccCCCCCCceeeeCCCCCCcccCCCCCCC
Q 019484 13 GMCMRCKETPVEEEQLCCKTCATPWHVACLVRPP 46 (340)
Q Consensus 13 ~~c~~c~~~~~~~~~l~c~~c~~~~h~~cl~~p~ 46 (340)
..|.+|++.-- .-|.|..|.--.|-.|....|
T Consensus 15 t~C~~C~k~i~--~G~kC~~Ck~~cH~kC~~~vp 46 (49)
T 1kbe_A 15 QVCNVCQKSMI--FGVKCKHCRLKCHNKCTKEAP 46 (49)
T ss_dssp CCCSSSCCSSC--CEEEETTTTEEESSSCTTTSC
T ss_pred cCccccCceeE--CcCCCCCCCCccchhhcCcCC
Confidence 67999999775 348999999999999988433
No 267
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.24 E-value=1e+02 Score=20.98 Aligned_cols=36 Identities=17% Similarity=0.509 Sum_probs=18.0
Q ss_pred ccccccCCCCCCcccCCCCcccchhhhhhhccCCCCCCCCCcccC
Q 019484 149 NCSFCMQLPERPVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIP 193 (340)
Q Consensus 149 ~C~iC~~~~~~pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 193 (340)
.|..|...+...++..-+..|...| +.|-.|+.++.
T Consensus 7 ~C~~C~~~I~~~~v~a~~~~wH~~C---------F~C~~C~~~L~ 42 (73)
T 1wig_A 7 GCDSCEKYITGRVLEAGEKHYHPSC---------ALCVRCGQMFA 42 (73)
T ss_dssp SCSSSCCCCSSCCBCCSSCCBCTTT---------SCCSSSCCCCC
T ss_pred CcccCCCEecCeeEEeCCCCCCCCc---------CEeCCCCCCCC
Confidence 4666666555444444444444433 34555555543
No 268
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=20.20 E-value=23 Score=32.44 Aligned_cols=46 Identities=20% Similarity=0.425 Sum_probs=33.7
Q ss_pred CCCcccccccCCCCCCccc----CCC--CcccchhhhhhhccCCCCCCCCCcc
Q 019484 145 GGSLNCSFCMQLPERPVTT----PCG--HNFCLKCFQKWIGLGKKTCAKCRCI 191 (340)
Q Consensus 145 ~~~~~C~iC~~~~~~pv~l----~Cg--H~FC~~Ci~~~~~~~~~~CP~Cr~~ 191 (340)
...-.||||-....-.++. .=| +.+|..|-..|... ...||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~-R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV-RIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC-TTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec-CcCCcCCCCC
Confidence 4568999999877654443 234 45799999988765 5689999775
No 269
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=20.13 E-value=19 Score=30.03 Aligned_cols=48 Identities=25% Similarity=0.498 Sum_probs=34.4
Q ss_pred CCcccccccCCCCC---CcccCCCCcccchhhhhhhccCCCCCCCCCcccCC
Q 019484 146 GSLNCSFCMQLPER---PVTTPCGHNFCLKCFQKWIGLGKKTCAKCRCIIPS 194 (340)
Q Consensus 146 ~~~~C~iC~~~~~~---pv~l~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 194 (340)
+-|.|..|...|.. .....=|..||..|..+.+.. ...|..|...|..
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~-~~~C~~C~~~I~~ 81 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGACSACGQSIPA 81 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC-CEECTTTCCEECT
T ss_pred cCcccCCCCcccccCCceEEEeCCcccccccccccccc-CCccccCCCcccc
Confidence 35889999888763 444456788999998876542 1269999988763
Done!