Query 019486
Match_columns 340
No_of_seqs 434 out of 2802
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 09:51:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019486.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019486hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0716 Molecular chaperone (D 99.9 2E-25 4.3E-30 206.5 1.4 239 64-338 25-277 (279)
2 COG0484 DnaJ DnaJ-class molecu 99.9 1E-22 2.3E-27 198.1 7.6 69 68-136 2-70 (371)
3 KOG0713 Molecular chaperone (D 99.8 1.1E-21 2.4E-26 186.9 7.2 71 66-136 12-82 (336)
4 PRK14288 chaperone protein Dna 99.8 3.3E-19 7.1E-24 175.9 7.0 68 69-136 2-69 (369)
5 PRK14296 chaperone protein Dna 99.7 1.2E-18 2.6E-23 172.1 7.2 67 69-136 3-69 (372)
6 PRK14279 chaperone protein Dna 99.7 1.4E-18 3E-23 172.7 7.1 68 69-136 8-75 (392)
7 PRK14286 chaperone protein Dna 99.7 2.9E-18 6.2E-23 169.4 7.3 68 69-136 3-70 (372)
8 KOG0712 Molecular chaperone (D 99.7 3.4E-18 7.4E-23 164.6 6.7 65 69-136 3-67 (337)
9 PRK14282 chaperone protein Dna 99.7 1.1E-17 2.4E-22 165.1 7.5 68 69-136 3-71 (369)
10 PRK14287 chaperone protein Dna 99.7 1.3E-17 2.7E-22 164.8 7.3 67 69-136 3-69 (371)
11 PF00226 DnaJ: DnaJ domain; I 99.7 1.6E-17 3.6E-22 123.5 6.1 63 71-133 1-64 (64)
12 PRK14285 chaperone protein Dna 99.7 1.3E-17 2.8E-22 164.4 7.3 67 70-136 3-69 (365)
13 PRK14277 chaperone protein Dna 99.7 1.6E-17 3.5E-22 164.8 7.5 68 69-136 4-71 (386)
14 PRK14297 chaperone protein Dna 99.7 1.7E-17 3.7E-22 164.4 7.5 68 69-136 3-70 (380)
15 PTZ00037 DnaJ_C chaperone prot 99.7 1.3E-17 2.9E-22 166.8 6.7 65 69-137 27-91 (421)
16 PRK14294 chaperone protein Dna 99.7 1.8E-17 3.9E-22 163.5 7.4 68 69-136 3-70 (366)
17 PRK14301 chaperone protein Dna 99.7 2.3E-17 5.1E-22 163.0 7.5 68 69-136 3-70 (373)
18 PRK14299 chaperone protein Dna 99.7 2.5E-17 5.4E-22 157.8 7.4 68 69-137 3-70 (291)
19 PRK14276 chaperone protein Dna 99.7 2.3E-17 4.9E-22 163.5 7.0 67 69-136 3-69 (380)
20 PRK14298 chaperone protein Dna 99.7 2.5E-17 5.5E-22 163.0 6.9 67 69-136 4-70 (377)
21 PRK14283 chaperone protein Dna 99.7 2.7E-17 5.9E-22 162.8 7.0 67 69-136 4-70 (378)
22 PRK14284 chaperone protein Dna 99.7 2.9E-17 6.4E-22 163.3 7.2 67 70-136 1-67 (391)
23 KOG0717 Molecular chaperone (D 99.7 1.9E-17 4E-22 162.8 5.5 78 68-145 6-84 (508)
24 PRK14295 chaperone protein Dna 99.7 3.1E-17 6.7E-22 163.0 7.2 66 69-134 8-73 (389)
25 PRK14278 chaperone protein Dna 99.7 3.4E-17 7.3E-22 162.1 6.8 66 70-136 3-68 (378)
26 KOG0691 Molecular chaperone (D 99.7 3.7E-17 7.9E-22 155.8 6.8 70 69-138 4-73 (296)
27 PRK14291 chaperone protein Dna 99.7 3.7E-17 8E-22 162.1 7.0 67 69-136 2-68 (382)
28 PRK10767 chaperone protein Dna 99.7 4.6E-17 1E-21 160.8 7.5 68 69-136 3-70 (371)
29 PRK14280 chaperone protein Dna 99.7 4.3E-17 9.4E-22 161.3 6.9 67 69-136 3-69 (376)
30 PRK14281 chaperone protein Dna 99.7 5.1E-17 1.1E-21 161.8 7.1 67 70-136 3-69 (397)
31 PRK14289 chaperone protein Dna 99.7 1.6E-16 3.4E-21 157.8 7.4 68 69-136 4-71 (386)
32 PRK14290 chaperone protein Dna 99.6 1.9E-16 4.2E-21 156.1 7.2 67 70-136 3-70 (365)
33 KOG0715 Molecular chaperone (D 99.6 2.7E-16 5.9E-21 150.2 6.7 68 70-138 43-110 (288)
34 TIGR02349 DnaJ_bact chaperone 99.6 2.8E-16 6E-21 154.4 6.8 65 71-136 1-65 (354)
35 PRK14292 chaperone protein Dna 99.6 3.7E-16 8.1E-21 154.4 7.1 66 70-136 2-67 (371)
36 PRK14300 chaperone protein Dna 99.6 3.2E-16 7E-21 154.9 6.5 66 70-136 3-68 (372)
37 PRK10266 curved DNA-binding pr 99.6 4.5E-16 9.7E-21 150.1 6.6 66 70-136 4-69 (306)
38 PRK14293 chaperone protein Dna 99.6 5.3E-16 1.2E-20 153.5 6.8 67 69-136 2-68 (374)
39 smart00271 DnaJ DnaJ molecular 99.6 1.2E-15 2.7E-20 111.6 6.9 58 70-127 1-59 (60)
40 KOG0718 Molecular chaperone (D 99.6 7E-16 1.5E-20 151.9 6.4 72 67-138 6-80 (546)
41 cd06257 DnaJ DnaJ domain or J- 99.6 3E-15 6.4E-20 107.6 6.8 55 71-125 1-55 (55)
42 KOG0719 Molecular chaperone (D 99.6 1.1E-15 2.4E-20 139.0 5.1 72 68-139 12-85 (264)
43 PTZ00341 Ring-infected erythro 99.6 1.8E-15 4E-20 160.2 7.4 69 68-137 571-639 (1136)
44 PHA03102 Small T antigen; Revi 99.5 9.6E-15 2.1E-19 127.0 5.4 64 70-137 5-70 (153)
45 KOG0721 Molecular chaperone (D 99.5 1.9E-14 4.1E-19 129.9 6.7 72 65-136 94-165 (230)
46 COG2214 CbpA DnaJ-class molecu 99.5 2.5E-14 5.3E-19 127.9 6.9 68 68-135 4-72 (237)
47 TIGR03835 termin_org_DnaJ term 99.5 6.1E-14 1.3E-18 145.8 7.7 66 70-136 2-67 (871)
48 PRK05014 hscB co-chaperone Hsc 99.4 2.6E-13 5.7E-18 120.6 7.1 66 70-135 1-73 (171)
49 PRK03578 hscB co-chaperone Hsc 99.4 7E-13 1.5E-17 118.3 7.6 68 68-135 4-78 (176)
50 PRK01356 hscB co-chaperone Hsc 99.4 6.3E-13 1.4E-17 117.6 6.8 66 70-135 2-72 (166)
51 PRK00294 hscB co-chaperone Hsc 99.4 8.6E-13 1.9E-17 117.4 7.4 68 68-135 2-76 (173)
52 KOG0720 Molecular chaperone (D 99.3 1.6E-12 3.4E-17 128.4 6.0 69 66-135 231-299 (490)
53 PRK06991 ferredoxin; Provision 99.3 4.4E-12 9.5E-17 120.2 8.3 139 153-315 77-219 (270)
54 KOG0624 dsRNA-activated protei 99.3 3.8E-12 8.2E-17 122.4 7.6 68 68-135 392-462 (504)
55 PTZ00100 DnaJ chaperone protei 99.3 5.4E-12 1.2E-16 104.7 6.1 55 66-124 61-115 (116)
56 KOG0722 Molecular chaperone (D 99.2 4.1E-12 9E-17 117.2 3.2 67 68-135 31-97 (329)
57 COG5269 ZUO1 Ribosome-associat 99.2 1.9E-11 4.2E-16 113.6 4.9 123 64-203 37-164 (379)
58 KOG0550 Molecular chaperone (D 99.2 2.4E-11 5.2E-16 119.1 5.6 68 68-135 371-439 (486)
59 KOG0714 Molecular chaperone (D 99.2 2.7E-11 5.9E-16 113.3 4.7 69 69-137 2-71 (306)
60 PRK09430 djlA Dna-J like membr 99.1 4.9E-11 1.1E-15 113.1 6.3 59 67-125 197-262 (267)
61 COG1141 Fer Ferredoxin [Energy 99.1 3.9E-11 8.5E-16 90.5 3.1 58 155-213 2-67 (68)
62 PHA02624 large T antigen; Prov 99.1 7.3E-11 1.6E-15 121.7 5.8 60 69-132 10-71 (647)
63 PF13459 Fer4_15: 4Fe-4S singl 99.0 1.1E-10 2.5E-15 87.3 3.1 56 156-212 1-65 (65)
64 PRK01773 hscB co-chaperone Hsc 99.0 4.3E-10 9.3E-15 100.1 7.0 65 70-134 2-73 (173)
65 PF13370 Fer4_13: 4Fe-4S singl 99.0 1.1E-10 2.4E-15 85.6 1.0 55 158-212 1-58 (58)
66 COG5407 SEC63 Preprotein trans 98.9 1.2E-09 2.6E-14 107.8 4.8 69 68-136 96-169 (610)
67 KOG1150 Predicted molecular ch 98.9 3.2E-09 6.8E-14 95.1 6.2 69 64-132 47-116 (250)
68 TIGR00714 hscB Fe-S protein as 98.8 5E-09 1.1E-13 92.0 6.2 55 81-135 2-61 (157)
69 KOG0568 Molecular chaperone (D 98.7 5.3E-09 1.2E-13 95.6 1.0 58 67-125 44-102 (342)
70 COG2878 Predicted NADH:ubiquin 98.4 3.2E-08 7E-13 87.6 -0.8 62 151-215 105-167 (198)
71 KOG1789 Endocytosis protein RM 98.2 1.7E-06 3.7E-11 92.9 5.8 58 65-125 1276-1337(2235)
72 KOG0723 Molecular chaperone (D 98.2 4.4E-06 9.6E-11 67.9 6.0 66 57-126 43-108 (112)
73 PF14697 Fer4_21: 4Fe-4S diclu 97.8 3.7E-06 8.1E-11 61.9 -0.3 52 157-212 2-59 (59)
74 PRK05035 electron transport co 97.7 1.8E-05 4E-10 84.2 2.7 95 159-270 368-470 (695)
75 PF06902 Fer4_19: Divergent 4F 97.4 0.00022 4.8E-09 53.4 3.8 58 154-214 6-63 (64)
76 COG1143 NuoI Formate hydrogenl 97.2 9.5E-05 2E-09 65.9 0.3 64 153-216 47-118 (172)
77 COG1144 Pyruvate:ferredoxin ox 97.2 0.00013 2.9E-09 57.8 0.9 58 155-215 29-88 (91)
78 KOG3192 Mitochondrial J-type c 97.1 0.00051 1.1E-08 59.7 4.3 66 68-133 6-78 (168)
79 PRK08348 NADH-plastoquinone ox 97.1 0.0003 6.5E-09 58.8 2.5 60 154-215 35-95 (120)
80 KOG3256 NADH:ubiquinone oxidor 97.1 0.00012 2.7E-09 64.1 -0.2 76 138-214 88-171 (212)
81 COG1146 Ferredoxin [Energy pro 97.1 0.00033 7.2E-09 52.6 2.1 58 157-215 4-63 (68)
82 PF13187 Fer4_9: 4Fe-4S diclus 96.9 0.00023 5E-09 50.8 -0.2 49 162-210 1-55 (55)
83 PRK05113 electron transport co 96.8 0.00078 1.7E-08 61.0 3.0 58 155-215 108-166 (191)
84 PRK09626 oorD 2-oxoglutarate-a 96.8 0.00049 1.1E-08 56.0 1.3 62 154-216 9-76 (103)
85 TIGR00403 ndhI NADH-plastoquin 96.7 0.0011 2.4E-08 59.6 3.0 66 153-218 54-127 (183)
86 CHL00065 psaC photosystem I su 96.7 0.00049 1.1E-08 53.4 0.6 59 157-215 5-68 (81)
87 TIGR02060 aprB adenosine phosp 96.5 0.0016 3.5E-08 55.6 2.6 64 156-220 3-72 (132)
88 COG1142 HycB Fe-S-cluster-cont 96.5 0.00062 1.3E-08 60.2 -0.2 65 153-217 74-143 (165)
89 PRK09625 porD pyruvate flavodo 96.5 0.0017 3.6E-08 55.5 2.4 57 155-213 53-109 (133)
90 PLN00071 photosystem I subunit 96.5 0.00094 2E-08 51.7 0.6 58 157-214 5-67 (81)
91 PRK09623 vorD 2-ketoisovalerat 96.4 0.002 4.4E-08 52.7 2.5 58 155-215 45-103 (105)
92 PRK02651 photosystem I subunit 96.4 0.0014 3.1E-08 50.6 1.3 57 158-214 6-67 (81)
93 TIGR02936 fdxN_nitrog ferredox 96.4 0.0016 3.5E-08 51.2 1.5 61 153-213 13-90 (91)
94 TIGR01944 rnfB electron transp 96.3 0.0022 4.9E-08 56.6 2.4 57 155-213 107-163 (165)
95 TIGR02494 PFLE_PFLC glycyl-rad 96.1 0.0019 4.1E-08 61.7 0.8 61 153-214 40-103 (295)
96 TIGR02179 PorD_KorD 2-oxoacid: 96.1 0.0029 6.2E-08 48.4 1.7 57 156-214 20-76 (78)
97 TIGR03224 benzo_boxA benzoyl-C 96.1 0.0038 8.3E-08 62.9 2.8 55 155-212 4-58 (411)
98 TIGR02163 napH_ ferredoxin-typ 96.0 0.0039 8.4E-08 58.9 2.4 54 159-213 199-254 (255)
99 PRK08318 dihydropyrimidine deh 96.0 0.0032 6.9E-08 63.4 1.9 59 155-215 336-400 (420)
100 PRK13984 putative oxidoreducta 96.0 0.0029 6.3E-08 66.5 1.6 59 156-214 40-107 (604)
101 PRK07569 bidirectional hydroge 96.0 0.021 4.5E-07 53.2 7.1 62 154-215 139-212 (234)
102 TIGR03048 PS_I_psaC photosyste 96.0 0.0027 5.9E-08 49.1 0.9 59 156-214 3-66 (80)
103 PRK09624 porD pyuvate ferredox 96.0 0.0033 7.1E-08 51.5 1.4 55 157-214 47-102 (105)
104 PRK08222 hydrogenase 4 subunit 95.9 0.0024 5.2E-08 57.3 0.6 66 153-218 30-98 (181)
105 COG1076 DjlA DnaJ-domain-conta 95.9 0.0055 1.2E-07 54.6 2.8 54 70-123 113-173 (174)
106 CHL00014 ndhI NADH dehydrogena 95.9 0.0056 1.2E-07 54.2 2.7 64 155-218 53-124 (167)
107 PRK05888 NADH dehydrogenase su 95.9 0.0045 9.8E-08 54.5 2.1 54 162-215 59-119 (164)
108 PRK09898 hypothetical protein; 95.9 0.0052 1.1E-07 56.2 2.6 58 155-218 148-206 (208)
109 PRK09477 napH quinol dehydroge 95.9 0.0048 1E-07 58.7 2.4 56 158-213 205-262 (271)
110 PRK12387 formate hydrogenlyase 95.8 0.0038 8.2E-08 55.8 1.4 67 154-220 31-100 (180)
111 PF13247 Fer4_11: 4Fe-4S diclu 95.8 0.0024 5.2E-08 51.8 0.0 61 154-214 33-97 (98)
112 TIGR01971 NuoI NADH-quinone ox 95.8 0.0037 8E-08 52.0 1.0 57 161-217 43-106 (122)
113 COG1145 NapF Ferredoxin [Energ 95.7 0.0055 1.2E-07 48.2 1.8 58 157-215 25-85 (99)
114 COG1076 DjlA DnaJ-domain-conta 95.6 0.0074 1.6E-07 53.8 2.3 63 71-133 2-71 (174)
115 PRK08764 ferredoxin; Provision 95.5 0.01 2.2E-07 50.8 2.8 54 157-212 81-134 (135)
116 PRK14028 pyruvate ferredoxin o 95.5 0.0053 1.2E-07 59.5 1.0 60 155-214 241-310 (312)
117 COG0437 HybA Fe-S-cluster-cont 95.4 0.0052 1.1E-07 56.1 0.7 64 155-221 94-164 (203)
118 PRK06273 ferredoxin; Provision 95.4 0.0062 1.4E-07 54.0 1.0 55 157-212 45-110 (165)
119 TIGR00402 napF ferredoxin-type 95.3 0.0049 1.1E-07 50.0 0.2 58 158-215 31-88 (101)
120 TIGR01582 FDH-beta formate deh 95.3 0.0058 1.3E-07 58.7 0.6 63 155-220 118-187 (283)
121 PF13237 Fer4_10: 4Fe-4S diclu 95.2 0.0049 1.1E-07 43.4 -0.2 50 156-206 2-52 (52)
122 KOG0431 Auxilin-like protein a 95.1 0.026 5.7E-07 57.6 4.6 28 79-106 397-424 (453)
123 PRK10882 hydrogenase 2 protein 95.1 0.0079 1.7E-07 58.9 0.8 59 155-217 137-209 (328)
124 TIGR02700 flavo_MJ0208 archaeo 95.0 0.013 2.8E-07 54.6 2.1 61 156-220 143-204 (234)
125 PRK10194 ferredoxin-type prote 94.9 0.0074 1.6E-07 53.0 0.2 56 159-214 32-87 (163)
126 PRK10330 formate dehydrogenase 94.9 0.014 2.9E-07 52.1 1.7 67 156-222 82-164 (181)
127 PF03656 Pam16: Pam16; InterP 94.6 0.073 1.6E-06 45.2 5.4 58 66-127 54-111 (127)
128 PRK00783 DNA-directed RNA poly 94.5 0.037 8.1E-07 52.4 3.9 90 160-266 168-259 (263)
129 TIGR02512 Fe_only_hydrog hydro 94.5 0.014 2.9E-07 58.2 0.9 58 156-213 2-70 (374)
130 PRK12769 putative oxidoreducta 94.5 0.03 6.5E-07 59.6 3.4 64 155-218 79-150 (654)
131 TIGR01660 narH nitrate reducta 94.2 0.058 1.3E-06 54.8 4.5 58 155-215 175-236 (492)
132 TIGR03149 cyt_nit_nrfC cytochr 94.0 0.02 4.3E-07 53.1 0.7 59 156-217 120-186 (225)
133 TIGR02745 ccoG_rdxA_fixG cytoc 93.8 0.049 1.1E-06 55.4 3.3 43 160-211 230-272 (434)
134 PRK08166 NADH dehydrogenase su 93.8 0.071 1.5E-06 58.5 4.7 59 155-214 143-210 (847)
135 PF12837 Fer4_6: 4Fe-4S bindin 93.7 0.012 2.6E-07 35.4 -0.9 21 156-176 2-22 (24)
136 PTZ00305 NADH:ubiquinone oxido 93.6 0.0093 2E-07 57.2 -2.2 68 156-224 207-284 (297)
137 COG3383 Uncharacterized anaero 93.6 0.044 9.6E-07 58.5 2.6 112 84-211 81-210 (978)
138 PRK08493 NADH dehydrogenase su 93.5 0.023 5E-07 62.0 0.3 59 155-214 135-225 (819)
139 PF12797 Fer4_2: 4Fe-4S bindin 93.4 0.021 4.6E-07 33.7 -0.0 19 156-174 3-21 (22)
140 COG1149 MinD superfamily P-loo 93.2 0.029 6.4E-07 53.4 0.5 57 155-215 63-121 (284)
141 cd07030 RNAP_D D subunit of Ar 93.1 0.15 3.2E-06 48.2 5.0 88 160-264 168-257 (259)
142 TIGR01973 NuoG NADH-quinone ox 92.7 0.13 2.7E-06 54.4 4.4 59 155-214 136-203 (603)
143 TIGR02176 pyruv_ox_red pyruvat 92.4 0.052 1.1E-06 61.5 1.1 60 157-216 679-764 (1165)
144 TIGR02951 DMSO_dmsB DMSO reduc 92.4 0.066 1.4E-06 46.8 1.5 58 156-216 90-154 (161)
145 TIGR02912 sulfite_red_C sulfit 92.2 0.042 9E-07 53.4 0.1 56 157-214 165-222 (314)
146 TIGR03336 IOR_alpha indolepyru 92.2 0.12 2.6E-06 54.6 3.5 51 154-210 543-595 (595)
147 PF00037 Fer4: 4Fe-4S binding 92.2 0.029 6.4E-07 33.6 -0.7 21 157-177 2-22 (24)
148 PRK09129 NADH dehydrogenase su 92.1 0.14 2.9E-06 55.7 3.8 59 155-214 138-205 (776)
149 PRK07118 ferredoxin; Validated 92.0 0.13 2.7E-06 49.4 3.1 53 159-215 211-264 (280)
150 PRK14993 tetrathionate reducta 92.0 0.035 7.6E-07 52.2 -0.7 20 157-176 126-145 (244)
151 TIGR03287 methan_mark_16 putat 91.8 0.26 5.7E-06 49.4 5.1 55 155-215 296-352 (391)
152 TIGR03478 DMSO_red_II_bet DMSO 91.8 0.047 1E-06 53.1 -0.2 57 156-215 157-220 (321)
153 PRK13795 hypothetical protein; 91.7 0.057 1.2E-06 57.5 0.4 55 156-212 576-631 (636)
154 PF12838 Fer4_7: 4Fe-4S diclus 91.7 0.024 5.3E-07 39.9 -1.7 48 162-209 1-52 (52)
155 TIGR03315 Se_ygfK putative sel 91.4 0.091 2E-06 58.6 1.6 81 159-241 879-967 (1012)
156 PRK12809 putative oxidoreducta 91.3 0.084 1.8E-06 56.1 1.2 60 156-220 80-144 (639)
157 PRK12771 putative glutamate sy 91.3 0.14 3E-06 53.5 2.8 58 156-214 499-562 (564)
158 COG1034 NuoG NADH dehydrogenas 91.3 0.032 6.9E-07 59.6 -2.0 73 158-232 141-222 (693)
159 PRK10194 ferredoxin-type prote 91.2 0.089 1.9E-06 46.2 1.1 49 163-214 106-159 (163)
160 COG2768 Uncharacterized Fe-S c 90.8 0.21 4.6E-06 48.3 3.2 68 153-225 185-254 (354)
161 COG3592 Uncharacterized conser 90.8 0.23 4.9E-06 37.5 2.7 55 155-212 17-71 (74)
162 TIGR03294 FrhG coenzyme F420 h 90.7 0.12 2.5E-06 48.2 1.3 53 155-212 168-222 (228)
163 PRK09130 NADH dehydrogenase su 90.7 0.054 1.2E-06 58.2 -1.0 58 155-213 139-205 (687)
164 PRK07860 NADH dehydrogenase su 90.7 0.047 1E-06 59.6 -1.5 57 155-212 144-209 (797)
165 PRK13029 2-oxoacid ferredoxin 90.6 0.14 3E-06 57.8 2.0 53 152-207 648-705 (1186)
166 TIGR03478 DMSO_red_II_bet DMSO 90.2 0.43 9.3E-06 46.6 4.8 59 154-215 122-184 (321)
167 PRK07118 ferredoxin; Validated 90.1 0.18 4E-06 48.3 2.2 51 161-215 139-190 (280)
168 COG4231 Indolepyruvate ferredo 90.1 0.16 3.4E-06 53.5 1.7 55 155-214 571-629 (640)
169 PRK09476 napG quinol dehydroge 89.9 0.089 1.9E-06 49.8 -0.2 54 161-214 59-120 (254)
170 PRK09193 indolepyruvate ferred 89.2 0.2 4.2E-06 56.6 1.9 52 153-207 635-691 (1165)
171 TIGR01660 narH nitrate reducta 89.1 0.12 2.7E-06 52.5 0.2 56 155-213 208-270 (492)
172 PRK09853 putative selenate red 88.5 0.35 7.6E-06 54.0 3.2 56 157-215 882-948 (1019)
173 PRK13030 2-oxoacid ferredoxin 88.2 0.25 5.3E-06 55.9 1.8 57 153-213 621-682 (1159)
174 COG1148 HdrA Heterodisulfide r 88.1 0.27 5.8E-06 50.6 1.8 54 155-216 555-610 (622)
175 PRK14993 tetrathionate reducta 87.9 0.57 1.2E-05 44.0 3.8 53 160-215 97-152 (244)
176 cd01916 ACS_1 Acetyl-CoA synth 87.5 1.8 3.9E-05 46.9 7.7 52 158-209 362-419 (731)
177 TIGR01582 FDH-beta formate deh 87.0 0.62 1.3E-05 44.8 3.5 55 158-215 88-146 (283)
178 PF12800 Fer4_4: 4Fe-4S bindin 86.1 0.54 1.2E-05 25.8 1.5 15 161-175 2-16 (17)
179 TIGR03149 cyt_nit_nrfC cytochr 85.8 0.78 1.7E-05 42.5 3.4 55 157-214 88-146 (225)
180 TIGR00397 mauM_napG MauM/NapG 83.6 0.24 5.3E-06 45.6 -1.0 52 161-212 53-112 (213)
181 PF14697 Fer4_21: 4Fe-4S diclu 83.5 0.95 2.1E-05 33.1 2.3 21 157-177 35-56 (59)
182 TIGR00397 mauM_napG MauM/NapG 83.2 0.96 2.1E-05 41.6 2.8 57 156-215 126-199 (213)
183 PRK09476 napG quinol dehydroge 83.1 0.58 1.3E-05 44.3 1.3 55 157-214 133-207 (254)
184 TIGR00273 iron-sulfur cluster- 83.0 0.78 1.7E-05 46.7 2.3 52 157-208 289-358 (432)
185 PRK09326 F420H2 dehydrogenase 81.8 0.42 9.1E-06 47.0 -0.2 57 154-210 5-70 (341)
186 TIGR00314 cdhA CO dehydrogenas 80.9 1.1 2.4E-05 48.6 2.6 53 156-208 394-452 (784)
187 TIGR02951 DMSO_dmsB DMSO reduc 79.7 1.6 3.5E-05 38.0 2.8 55 158-215 59-117 (161)
188 PRK09898 hypothetical protein; 79.6 1.6 3.5E-05 39.8 2.9 54 157-213 117-174 (208)
189 PF13446 RPT: A repeated domai 77.2 5 0.00011 29.2 4.4 27 70-96 5-31 (62)
190 KOG0724 Zuotin and related mol 76.4 2.8 6E-05 40.9 3.7 55 81-135 3-61 (335)
191 COG1245 Predicted ATPase, RNas 75.8 1.8 3.8E-05 44.6 2.1 56 156-215 6-72 (591)
192 PRK10330 formate dehydrogenase 75.7 1.7 3.7E-05 38.6 1.9 51 160-214 55-108 (181)
193 COG1148 HdrA Heterodisulfide r 75.1 2 4.3E-05 44.5 2.3 59 157-216 221-294 (622)
194 KOG3256 NADH:ubiquinone oxidor 74.5 1.1 2.5E-05 39.6 0.4 30 155-184 144-174 (212)
195 PRK15449 ferredoxin-like prote 73.5 1.3 2.9E-05 35.7 0.5 24 154-177 54-77 (95)
196 PF11833 DUF3353: Protein of u 73.4 6.6 0.00014 35.7 5.1 39 79-125 1-40 (194)
197 PRK13409 putative ATPase RIL; 72.0 1.6 3.5E-05 46.2 0.9 25 154-178 42-66 (590)
198 PRK12769 putative oxidoreducta 71.9 2.5 5.3E-05 45.1 2.2 53 159-215 52-107 (654)
199 PRK12809 putative oxidoreducta 71.1 3.2 7E-05 44.2 2.9 54 158-214 51-106 (639)
200 PRK00941 acetyl-CoA decarbonyl 70.8 3.9 8.5E-05 44.5 3.4 54 156-209 399-458 (781)
201 COG1142 HycB Fe-S-cluster-cont 70.4 3.4 7.3E-05 36.7 2.4 51 161-215 51-104 (165)
202 PF14687 DUF4460: Domain of un 70.3 10 0.00022 31.5 5.1 46 81-126 5-54 (112)
203 COG1144 Pyruvate:ferredoxin ox 69.8 1.6 3.6E-05 34.8 0.3 20 158-177 63-82 (91)
204 COG1245 Predicted ATPase, RNas 69.7 1.7 3.6E-05 44.7 0.4 22 157-178 46-67 (591)
205 PF12798 Fer4_3: 4Fe-4S bindin 67.8 1.3 2.8E-05 23.6 -0.5 13 163-175 1-13 (15)
206 COG4231 Indolepyruvate ferredo 67.7 2.2 4.8E-05 45.1 0.8 28 154-181 601-628 (640)
207 TIGR01945 rnfC electron transp 67.0 2 4.4E-05 43.7 0.3 19 158-176 360-378 (435)
208 PF13746 Fer4_18: 4Fe-4S diclu 66.7 2.7 5.7E-05 31.7 0.8 21 159-179 48-68 (69)
209 PF13247 Fer4_11: 4Fe-4S diclu 66.2 3.5 7.6E-05 33.3 1.5 55 160-217 6-64 (98)
210 PRK10882 hydrogenase 2 protein 65.6 4.1 8.9E-05 40.1 2.2 52 159-214 108-164 (328)
211 PRK12576 succinate dehydrogena 64.3 2.4 5.2E-05 40.6 0.3 18 159-176 150-167 (279)
212 PF13183 Fer4_8: 4Fe-4S diclus 63.6 0.36 7.8E-06 34.2 -4.3 18 161-178 3-20 (57)
213 COG1143 NuoI Formate hydrogenl 63.6 3.7 8E-05 36.7 1.3 26 154-179 88-113 (172)
214 PRK13552 frdB fumarate reducta 63.2 1.8 4E-05 40.5 -0.7 16 161-176 149-164 (239)
215 COG1146 Ferredoxin [Energy pro 62.5 3 6.6E-05 30.9 0.5 25 153-177 33-57 (68)
216 COG2221 DsrA Dissimilatory sul 59.5 3.9 8.5E-05 39.9 0.7 47 157-206 168-214 (317)
217 COG1139 Uncharacterized conser 58.7 2.1 4.6E-05 43.4 -1.2 26 158-183 305-330 (459)
218 PRK13409 putative ATPase RIL; 57.8 4.4 9.5E-05 42.9 0.9 57 156-215 5-71 (590)
219 TIGR02936 fdxN_nitrog ferredox 57.0 3.4 7.4E-05 32.1 -0.1 21 157-177 66-86 (91)
220 TIGR03379 glycerol3P_GlpC glyc 55.1 5.5 0.00012 39.6 1.0 16 161-176 5-20 (397)
221 PRK05035 electron transport co 54.6 15 0.00032 39.8 4.2 21 159-179 407-427 (695)
222 TIGR02066 dsrB sulfite reducta 53.6 6.8 0.00015 38.7 1.4 15 163-177 183-197 (341)
223 PRK11168 glpC sn-glycerol-3-ph 51.4 5.7 0.00012 39.4 0.4 18 160-177 6-23 (396)
224 TIGR02912 sulfite_red_C sulfit 49.4 8.4 0.00018 37.3 1.2 27 155-181 195-221 (314)
225 PF13484 Fer4_16: 4Fe-4S doubl 49.4 6.4 0.00014 28.7 0.3 17 198-214 5-21 (67)
226 COG1149 MinD superfamily P-loo 49.0 9.6 0.00021 36.6 1.5 21 157-177 95-115 (284)
227 TIGR00402 napF ferredoxin-type 48.9 11 0.00024 30.3 1.7 24 157-180 62-85 (101)
228 PRK08493 NADH dehydrogenase su 48.8 6.5 0.00014 43.3 0.4 25 159-183 202-226 (819)
229 COG1453 Predicted oxidoreducta 47.7 39 0.00084 33.9 5.5 83 84-179 280-369 (391)
230 COG2221 DsrA Dissimilatory sul 47.1 7.5 0.00016 37.9 0.5 36 155-191 195-231 (317)
231 TIGR02066 dsrB sulfite reducta 46.7 7 0.00015 38.6 0.3 35 155-189 208-243 (341)
232 PRK15449 ferredoxin-like prote 46.5 17 0.00036 29.4 2.3 46 165-213 35-82 (95)
233 PRK12814 putative NADPH-depend 46.2 5.8 0.00013 42.4 -0.5 21 156-176 611-631 (652)
234 PRK09625 porD pyruvate flavodo 46.1 6.1 0.00013 33.6 -0.3 22 157-178 85-106 (133)
235 COG3383 Uncharacterized anaero 46.0 11 0.00025 40.9 1.6 24 157-180 188-211 (978)
236 TIGR00403 ndhI NADH-plastoquin 45.2 9.3 0.0002 34.3 0.8 26 157-182 98-124 (183)
237 PRK05888 NADH dehydrogenase su 44.9 11 0.00024 33.0 1.1 22 157-178 93-114 (164)
238 PRK06991 ferredoxin; Provision 44.2 7.8 0.00017 37.1 0.1 23 156-178 110-132 (270)
239 COG0479 FrdB Succinate dehydro 44.0 9.9 0.00022 35.6 0.8 15 162-176 143-157 (234)
240 PRK09624 porD pyuvate ferredox 43.1 9.9 0.00021 30.9 0.6 23 156-178 76-98 (105)
241 COG4656 RnfC Predicted NADH:ub 42.4 6.8 0.00015 40.7 -0.6 15 162-176 366-380 (529)
242 CHL00014 ndhI NADH dehydrogena 41.7 12 0.00025 33.0 0.8 22 157-178 95-116 (167)
243 TIGR02064 dsrA sulfite reducta 41.0 17 0.00036 36.8 1.9 34 155-188 266-299 (402)
244 TIGR02176 pyruv_ox_red pyruvat 40.6 13 0.00028 42.7 1.2 21 156-176 734-754 (1165)
245 PRK11274 glcF glycolate oxidas 40.6 17 0.00037 36.2 1.9 16 161-176 23-38 (407)
246 PLN00071 photosystem I subunit 39.6 12 0.00025 28.5 0.4 22 158-179 43-64 (81)
247 PRK02651 photosystem I subunit 39.3 14 0.0003 28.0 0.8 21 158-178 43-63 (81)
248 PRK09853 putative selenate red 37.7 13 0.00029 41.9 0.7 21 156-176 921-941 (1019)
249 CHL00065 psaC photosystem I su 37.0 15 0.00032 28.1 0.6 21 158-178 43-63 (81)
250 KOG1608 Protein transporter of 37.0 16 0.00035 35.5 1.0 24 313-337 321-347 (374)
251 TIGR03294 FrhG coenzyme F420 h 36.5 8.7 0.00019 35.7 -0.8 27 156-182 198-224 (228)
252 TIGR01971 NuoI NADH-quinone ox 36.3 17 0.00038 29.7 1.0 25 157-181 78-103 (122)
253 PRK06273 ferredoxin; Provision 36.2 17 0.00038 32.1 1.1 23 156-178 86-108 (165)
254 PRK07570 succinate dehydrogena 36.0 18 0.00039 34.2 1.2 17 160-176 156-172 (250)
255 PRK12387 formate hydrogenlyase 35.7 17 0.00036 32.3 0.9 22 157-178 69-90 (180)
256 PRK08318 dihydropyrimidine deh 35.7 13 0.00028 37.5 0.1 20 156-175 372-391 (420)
257 KOG2282 NADH-ubiquinone oxidor 34.5 3.6 7.9E-05 42.6 -3.9 54 159-213 173-235 (708)
258 KOG3442 Uncharacterized conser 34.0 72 0.0016 27.1 4.3 53 68-124 57-109 (132)
259 PRK08348 NADH-plastoquinone ox 33.0 15 0.00033 30.3 0.1 21 157-177 69-89 (120)
260 PRK09477 napH quinol dehydroge 32.1 16 0.00034 34.7 0.1 20 158-177 239-258 (271)
261 PRK09623 vorD 2-ketoisovalerat 32.0 17 0.00038 29.4 0.3 22 156-177 76-97 (105)
262 PRK14028 pyruvate ferredoxin o 31.8 19 0.00042 34.7 0.7 20 158-177 286-305 (312)
263 COG5552 Uncharacterized conser 30.8 1.8E+02 0.0038 22.6 5.5 34 69-102 2-39 (88)
264 TIGR03290 CoB_CoM_SS_C CoB--Co 28.8 28 0.0006 29.7 1.1 16 161-176 2-17 (144)
265 COG2878 Predicted NADH:ubiquin 28.8 32 0.00069 31.2 1.5 27 199-225 121-147 (198)
266 PRK15055 anaerobic sulfite red 28.7 26 0.00056 34.8 0.9 17 161-177 226-242 (344)
267 PRK09626 oorD 2-oxoglutarate-a 28.2 27 0.00058 28.0 0.8 22 157-178 49-70 (103)
268 TIGR02910 sulfite_red_A sulfit 28.1 26 0.00057 34.6 0.9 21 159-179 299-319 (334)
269 PRK09326 F420H2 dehydrogenase 28.0 30 0.00066 33.9 1.3 21 158-178 50-70 (341)
270 COG0247 GlpC Fe-S oxidoreducta 27.9 15 0.00032 36.0 -0.9 21 159-179 7-27 (388)
271 COG1035 FrhB Coenzyme F420-red 27.6 32 0.0007 33.9 1.4 47 158-207 2-48 (332)
272 TIGR02060 aprB adenosine phosp 27.6 16 0.00034 31.2 -0.7 21 157-177 41-61 (132)
273 KOG0063 RNAse L inhibitor, ABC 27.3 22 0.00048 36.6 0.2 23 156-178 45-67 (592)
274 PRK08222 hydrogenase 4 subunit 26.9 31 0.00068 30.8 1.1 27 158-184 70-97 (181)
275 PRK05113 electron transport co 26.4 18 0.0004 32.6 -0.5 22 157-178 140-161 (191)
276 PRK08640 sdhB succinate dehydr 26.3 31 0.00066 32.6 1.0 18 160-177 151-168 (249)
277 TIGR00384 dhsB succinate dehyd 25.3 31 0.00068 31.6 0.8 18 159-176 136-153 (220)
278 TIGR02494 PFLE_PFLC glycyl-rad 25.2 55 0.0012 31.0 2.5 44 165-212 23-67 (295)
279 COG0437 HybA Fe-S-cluster-cont 24.8 71 0.0015 29.4 3.0 51 161-214 67-121 (203)
280 PLN00129 succinate dehydrogena 24.6 38 0.00083 32.5 1.3 16 161-176 187-202 (276)
281 TIGR02486 RDH reductive dehalo 24.5 33 0.00071 33.5 0.8 21 195-215 207-227 (314)
282 TIGR02910 sulfite_red_A sulfit 24.0 35 0.00076 33.7 0.9 23 160-182 219-243 (334)
283 TIGR02163 napH_ ferredoxin-typ 24.0 24 0.00053 33.2 -0.2 21 157-177 230-250 (255)
284 PF07709 SRR: Seven Residue Re 23.4 70 0.0015 16.5 1.6 13 112-124 2-14 (14)
285 TIGR02064 dsrA sulfite reducta 23.2 33 0.00072 34.7 0.6 21 195-215 244-264 (402)
286 COG1152 CdhA CO dehydrogenase/ 23.0 38 0.00082 36.0 0.9 23 160-182 399-421 (772)
287 PRK07860 NADH dehydrogenase su 22.8 34 0.00073 37.6 0.6 24 160-183 189-212 (797)
288 TIGR02512 Fe_only_hydrog hydro 22.7 33 0.00072 34.1 0.5 23 156-178 45-67 (374)
289 COG2768 Uncharacterized Fe-S c 22.3 31 0.00068 33.8 0.2 24 154-177 214-237 (354)
290 TIGR03290 CoB_CoM_SS_C CoB--Co 22.1 41 0.00088 28.7 0.8 19 161-179 46-64 (144)
291 PRK15033 tricarballylate utili 21.9 41 0.0009 33.9 1.0 20 161-180 67-90 (389)
292 PRK15055 anaerobic sulfite red 21.8 43 0.00093 33.2 1.1 21 159-179 305-325 (344)
293 PRK12385 fumarate reductase ir 21.8 43 0.00092 31.4 1.0 18 159-176 145-162 (244)
294 cd07030 RNAP_D D subunit of Ar 21.7 58 0.0013 30.6 1.9 24 157-180 195-219 (259)
295 TIGR01944 rnfB electron transp 21.4 28 0.0006 30.6 -0.3 22 157-178 139-160 (165)
296 PRK08764 ferredoxin; Provision 21.0 44 0.00095 28.3 0.8 21 157-177 111-131 (135)
297 PRK12771 putative glutamate sy 20.6 32 0.0007 35.9 -0.1 23 156-178 536-558 (564)
298 PRK13795 hypothetical protein; 20.4 34 0.00073 36.7 -0.0 25 156-180 607-631 (636)
299 PRK12386 fumarate reductase ir 20.4 48 0.001 31.4 1.0 17 160-176 141-157 (251)
300 PRK12577 succinate dehydrogena 20.2 48 0.001 32.5 1.0 16 161-176 152-167 (329)
No 1
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2e-25 Score=206.50 Aligned_cols=239 Identities=29% Similarity=0.354 Sum_probs=151.1
Q ss_pred CCCCCCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhccccccccccc
Q 019486 64 STDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSLIAT 143 (340)
Q Consensus 64 ~~~~~~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~l 143 (340)
+.+....|+|+||||+++|+.++||++||+|+++||||+++++|++.++|++||+||+||+||.+|..||+++++.....
T Consensus 25 ~~~~~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l~ 104 (279)
T KOG0716|consen 25 SEDVIRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKLA 104 (279)
T ss_pred ccccchhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHHH
Confidence 34445789999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred CCCCCCCCCCCccccccccc-----------cC-CCCcccCCCCcccccccCCceEEccCCCCHHHHHHHHHcCCcccee
Q 019486 144 NPFLDDSCPKDHVFVDEFSC-----------IG-CKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIH 211 (340)
Q Consensus 144 dp~~~~~~p~~~vfvDe~~C-----------iG-Cg~C~~v~P~~F~iedd~G~a~vv~q~g~~E~v~eAv~~CPv~cI~ 211 (340)
+.+.++..+...+|.+.+.| .+ |-.|. .|..-+-.. +..-+.+.++.+++++..|
T Consensus 105 e~fg~d~~~~~~v~~~~~~~~~~a~~dll~g~~~c~~c~-~cc~~~~~~------~~c~~~~~P~~~~~~~~~~------ 171 (279)
T KOG0716|consen 105 EQFGEDSKIIYFVFSSPWIKATAACFDLLTGQRHCLCCR-ACCCCCCCN------RFCCGKAKPEVSEQHDYYC------ 171 (279)
T ss_pred HhhcccCcceEEEecchhhhHHhhhhhhhhcchhhhhHH-hHhhhhcch------HHHhhccCCccccchhhHH------
Confidence 88877766665555543333 22 22221 122222221 1111123334445555555
Q ss_pred cccccchhhhHHHHHHHhhhhhhhhc-cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCccccccccccCCC
Q 019486 212 RTSAQQLSLLEDEMRRVERVNVAMML-SGMGSGSADVFRMASSRWERRQAKVLEQAKIRMMNREKDSDKTVSYWSNIWGK 290 (340)
Q Consensus 212 ~~~~~~l~~Le~~~~~~~~~~~~~~~-~g~~~~~~~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (340)
....+..|++++..+.++.+.-.. .+......+.|--+-.- + +..-+.+..+.- +...++.-++|- +
T Consensus 172 --~~s~i~~~~~l~~~~~~~~~~~~~ed~~i~~vs~~~~~v~~~---~--~~~~S~r~~~v~-~~v~~~p~~~~~----~ 239 (279)
T KOG0716|consen 172 --HRSRIALLNFLQSNNKRVCLSHLLEDVFIDLVSNGAYDVGFS---E--RVLYSKREVIVG-QPVFDMPISLWI----K 239 (279)
T ss_pred --hhchhhhhhhhhhccccccccccchhhhhhhhhhhhcccccc---c--ccccCccchhhC-ceeeccCccccc----c
Confidence 334445566666655555543221 00000001111000000 0 333333444443 344555556664 4
Q ss_pred CCCCC-CcHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccCCccccCC
Q 019486 291 PKDYR-NSEEEVKERSKRAAAAARRWREYSRRGADQPPTFKLPEATTSK 338 (340)
Q Consensus 291 ~~~~~-~~~~~~~~~a~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (340)
|.... ...+...||+...+..+|+|++ +|+|+.++.+
T Consensus 240 ~~~~~~~~~~~~~er~~~i~~~~~~~~~-----------~k~~D~~sr~ 277 (279)
T KOG0716|consen 240 PHSFRTWSSGNATERTQLIAPLIRSYYY-----------TKLPDSFSRL 277 (279)
T ss_pred ccCcccccccccccchhhcCCcccchhh-----------hcCCchhhhc
Confidence 43332 3456788999999999999998 8888877654
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1e-22 Score=198.10 Aligned_cols=69 Identities=45% Similarity=0.670 Sum_probs=66.3
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 68 ~~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
...|||+||||+.+||.+|||+|||+||++||||+|+++++++++|++|++||+|||||++|+.||.++
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG 70 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFG 70 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccC
Confidence 568999999999999999999999999999999999987999999999999999999999999999875
No 3
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.1e-21 Score=186.90 Aligned_cols=71 Identities=38% Similarity=0.574 Sum_probs=68.1
Q ss_pred CCCCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 66 DAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 66 ~~~~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
....+|||+||||+.+|+..|||+|||+||++||||+|+++|.+.+.|+.|+.||+|||||++|+.||.+|
T Consensus 12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~G 82 (336)
T KOG0713|consen 12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYG 82 (336)
T ss_pred hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999886
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=3.3e-19 Score=175.93 Aligned_cols=68 Identities=35% Similarity=0.533 Sum_probs=64.7
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
..|||+||||+++||.+|||+|||+||++||||+++.+++++++|++|++||+||+||.+|..||.++
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G 69 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYG 69 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhc
Confidence 36999999999999999999999999999999999876788999999999999999999999999875
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.2e-18 Score=172.14 Aligned_cols=67 Identities=37% Similarity=0.595 Sum_probs=63.5
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
..|||+||||+++|+.+|||+|||+|+++||||++++ +.+++.|++|++||+|||||.+|+.||.++
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~-~~a~~~F~~i~~AyevLsD~~KR~~YD~~G 69 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-PDAHDKMVEINEAADVLLDKDKRKQYDQFG 69 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-chHHHHHHHHHHHHHHhcCHHHhhhhhhcc
Confidence 4699999999999999999999999999999999875 778999999999999999999999999875
No 6
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.4e-18 Score=172.73 Aligned_cols=68 Identities=40% Similarity=0.628 Sum_probs=65.0
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
..|||+||||+++|+.+|||+|||+|+++||||++++++++++.|++|++||+|||||++|+.||.++
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G 75 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETR 75 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhh
Confidence 47999999999999999999999999999999999877788999999999999999999999999975
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=2.9e-18 Score=169.44 Aligned_cols=68 Identities=32% Similarity=0.538 Sum_probs=64.7
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
..|||+||||+++||.+|||+|||+|+++||||++++++++++.|++|++||+||+||.+|..||.++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G 70 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFG 70 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhC
Confidence 36999999999999999999999999999999999877788999999999999999999999999875
No 8
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3.4e-18 Score=164.61 Aligned_cols=65 Identities=40% Similarity=0.624 Sum_probs=62.5
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
...||+||||.++||.+|||+|||+|+++||||+|++ +.++|++|..||+|||||++|..||.++
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g 67 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYG 67 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhh
Confidence 4689999999999999999999999999999999988 8899999999999999999999999986
No 9
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.1e-17 Score=165.13 Aligned_cols=68 Identities=41% Similarity=0.666 Sum_probs=63.6
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC-hHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~-~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
..|||+||||+++||.+|||+|||+|+++||||+++++ .++++.|++|++||+||+||.+|..||.++
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g 71 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFG 71 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcC
Confidence 46999999999999999999999999999999998764 568899999999999999999999999875
No 10
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.3e-17 Score=164.84 Aligned_cols=67 Identities=34% Similarity=0.638 Sum_probs=63.3
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
..|||+||||+++||.+|||+|||+|+++||||+++. +++++.|++|++||+||+||.+|..||.++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G 69 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSDPQKKAHYDQFG 69 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCcHhHHHHHHhhC
Confidence 4699999999999999999999999999999999875 778899999999999999999999999875
No 11
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.71 E-value=1.6e-17 Score=123.50 Aligned_cols=63 Identities=48% Similarity=0.712 Sum_probs=59.7
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCh-HHHHHHHHHHHHHHHhcChhhhhhhc
Q 019486 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP-ETTNFCMFINEVYAVLSDPVQRMVYD 133 (340)
Q Consensus 71 d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~-~~~~~f~~i~~Ay~vLsdp~~R~~YD 133 (340)
|||+||||+++++.++||++|+++++++|||++.++. .+.+.|..|++||++|+||.+|..||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999988855 57899999999999999999999998
No 12
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.3e-17 Score=164.39 Aligned_cols=67 Identities=36% Similarity=0.549 Sum_probs=64.3
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 70 ~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
.|||+||||+++||.+|||+|||+|+++||||++++++++.+.|++|++||+||+||.+|..||.++
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g 69 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFG 69 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcC
Confidence 6999999999999999999999999999999999877788999999999999999999999999875
No 13
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.6e-17 Score=164.82 Aligned_cols=68 Identities=46% Similarity=0.689 Sum_probs=64.6
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
..|||+||||+++||.+|||+|||+|+++||||++++++++++.|++|++||+||+||.+|..||.++
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G 71 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFG 71 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhc
Confidence 36999999999999999999999999999999999877788999999999999999999999999875
No 14
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.7e-17 Score=164.36 Aligned_cols=68 Identities=40% Similarity=0.611 Sum_probs=64.7
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
..|||+||||+++|+.+|||+|||+|+++||||++++++++++.|++|++||+||+||.+|..||.++
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G 70 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFG 70 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcC
Confidence 36999999999999999999999999999999999877788999999999999999999999999875
No 15
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.70 E-value=1.3e-17 Score=166.78 Aligned_cols=65 Identities=42% Similarity=0.600 Sum_probs=60.5
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhccccc
Q 019486 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (340)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 137 (340)
..|||+||||+++||.+|||+|||+|+++||||++++ .+.|++|++||+||+||.+|..||.++.
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~ 91 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGE 91 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcc
Confidence 4699999999999999999999999999999999753 4899999999999999999999998753
No 16
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.8e-17 Score=163.49 Aligned_cols=68 Identities=40% Similarity=0.633 Sum_probs=64.8
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
..|||+||||+++||.+|||+|||+|+++||||++++++++++.|+.|++||+||+||.+|..||.++
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G 70 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYG 70 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhc
Confidence 47999999999999999999999999999999999877788999999999999999999999999875
No 17
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.3e-17 Score=163.03 Aligned_cols=68 Identities=40% Similarity=0.597 Sum_probs=64.6
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
..|||+||||+++||.++||+|||+|+++||||++++++++++.|++|++||+||+||.+|..||.++
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g 70 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFG 70 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcc
Confidence 46999999999999999999999999999999999877788899999999999999999999999875
No 18
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.5e-17 Score=157.77 Aligned_cols=68 Identities=40% Similarity=0.667 Sum_probs=63.9
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhccccc
Q 019486 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (340)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 137 (340)
..|||+||||+++||.+|||+|||+|+++||||++++ +.+++.|++|++||+||+||.+|..||.++.
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~ 70 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS-PGAEEKFKEINEAYTVLSDPEKRRIYDTYGT 70 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 4699999999999999999999999999999999875 7789999999999999999999999998753
No 19
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.3e-17 Score=163.49 Aligned_cols=67 Identities=37% Similarity=0.647 Sum_probs=63.3
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
..|||+||||+++||.+|||+|||+|+++||||++++ +.+++.|++|++||+||+||.+|..||.++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G 69 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-PGAEEKYKEVQEAYETLSDPQKRAAYDQYG 69 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhcCHhhhhhHhhcC
Confidence 3699999999999999999999999999999999875 678899999999999999999999999875
No 20
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.5e-17 Score=162.96 Aligned_cols=67 Identities=43% Similarity=0.652 Sum_probs=63.2
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
..|||+||||+++|+.+|||+|||+|+++||||++++ +++++.|++|++||+||+||.+|..||.++
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G 70 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-PDAEEKFKEISEAYAVLSDAEKRAQYDRFG 70 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC-hhHHHHHHHHHHHHHHhcchHhhhhhhhcC
Confidence 3699999999999999999999999999999999875 678899999999999999999999999875
No 21
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.7e-17 Score=162.81 Aligned_cols=67 Identities=40% Similarity=0.593 Sum_probs=63.6
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
..|||+||||+++||.+|||+|||+|+++||||++++ +++++.|++|++||+||+||.+|..||.++
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G 70 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFG 70 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhc
Confidence 4699999999999999999999999999999999875 778999999999999999999999999875
No 22
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.9e-17 Score=163.26 Aligned_cols=67 Identities=40% Similarity=0.603 Sum_probs=64.0
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 70 ~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
.|||+||||+++||.+|||+|||+|+++||||++++++.+++.|+.|++||+||+||.+|..||.++
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G 67 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYG 67 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcc
Confidence 4899999999999999999999999999999999887888999999999999999999999999875
No 23
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.9e-17 Score=162.80 Aligned_cols=78 Identities=37% Similarity=0.506 Sum_probs=69.1
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC-hHHHHHHHHHHHHHHHhcChhhhhhhcccccccccccCC
Q 019486 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSLIATNP 145 (340)
Q Consensus 68 ~~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~-~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~ldp 145 (340)
..+.||+||||..+|+..+||++||+|||+||||+++.. .++++.|+.|+.||+|||||..|.+||.++...+.+.++
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~~s 84 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGKNS 84 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCCCC
Confidence 457899999999999999999999999999999997764 568999999999999999999999999987655444444
No 24
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=3.1e-17 Score=162.96 Aligned_cols=66 Identities=44% Similarity=0.638 Sum_probs=63.3
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcc
Q 019486 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDE 134 (340)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~ 134 (340)
..|||+||||+++||.+|||+|||+|+++||||++++++++++.|++|++||+||+||.+|..||.
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 469999999999999999999999999999999998767789999999999999999999999998
No 25
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=3.4e-17 Score=162.14 Aligned_cols=66 Identities=36% Similarity=0.554 Sum_probs=63.0
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 70 ~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
.|||+||||+++||.+|||+|||+|+++||||++++ +++++.|++|++||+||+||.+|..||.++
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G 68 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-EEAQEKFKEISVAYEVLSDPEKRRIVDLGG 68 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc-HHHHHHHHHHHHHHHHhchhhhhhhhhccC
Confidence 699999999999999999999999999999999984 778899999999999999999999999875
No 26
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.7e-17 Score=155.77 Aligned_cols=70 Identities=39% Similarity=0.593 Sum_probs=67.3
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccccc
Q 019486 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGY 138 (340)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 138 (340)
..|||+||||+.+++..+|++|||..+++||||+|+++|.+.+.|+.|.+||+||+|+.+|..||.++..
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~ 73 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKS 73 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 5699999999999999999999999999999999999999999999999999999999999999998653
No 27
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=3.7e-17 Score=162.11 Aligned_cols=67 Identities=45% Similarity=0.740 Sum_probs=63.3
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
..|||+||||+++|+.++||+|||+|+++||||++++ +.+++.|++|++||+||+||.+|..||.++
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g 68 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFG 68 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhc
Confidence 3699999999999999999999999999999999976 678899999999999999999999999875
No 28
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=4.6e-17 Score=160.80 Aligned_cols=68 Identities=41% Similarity=0.623 Sum_probs=64.4
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
..|||+||||+++||.+|||+|||+|+++||||++++++.+++.|++|++||+||+||.+|..||.++
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g 70 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYG 70 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcc
Confidence 46999999999999999999999999999999999877778899999999999999999999999864
No 29
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=4.3e-17 Score=161.30 Aligned_cols=67 Identities=39% Similarity=0.600 Sum_probs=63.3
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
..|||+||||+++|+.+|||+|||+|+++||||++++ +.+++.|++|++||+||+||.+|..||.++
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G 69 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDDQKRAQYDQFG 69 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhccHhHHHHHHhcC
Confidence 3699999999999999999999999999999999875 678899999999999999999999999875
No 30
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=5.1e-17 Score=161.83 Aligned_cols=67 Identities=39% Similarity=0.585 Sum_probs=64.0
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 70 ~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
.|||+||||+++|+.+|||+|||+|+++||||++++++++++.|++|++||+||+||.+|..||.++
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g 69 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFG 69 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 6999999999999999999999999999999999877778899999999999999999999999875
No 31
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=1.6e-16 Score=157.82 Aligned_cols=68 Identities=41% Similarity=0.562 Sum_probs=64.8
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
..|||+||||+++||.+|||+|||+|+++||||++++++++++.|++|++||+||+||.+|..||.++
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G 71 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFG 71 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhc
Confidence 46999999999999999999999999999999999887889999999999999999999999999874
No 32
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=1.9e-16 Score=156.13 Aligned_cols=67 Identities=42% Similarity=0.636 Sum_probs=63.2
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCh-HHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP-ETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 70 ~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~-~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
.|||+||||+++||.+|||+|||+|+++||||+++.+. ++.+.|+.|++||+||+||.+|..||.++
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G 70 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTG 70 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccC
Confidence 69999999999999999999999999999999997654 68899999999999999999999999875
No 33
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.7e-16 Score=150.22 Aligned_cols=68 Identities=38% Similarity=0.539 Sum_probs=64.2
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccccc
Q 019486 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGY 138 (340)
Q Consensus 70 ~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 138 (340)
.|||+||||+.+|+..|||.||++|+|+||||.+.+ .++.+.|++|.+||+||+|+++|..||.++..
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~ 110 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSDEEKRQEYDVYGLE 110 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhh
Confidence 399999999999999999999999999999999988 58999999999999999999999999987643
No 34
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.63 E-value=2.8e-16 Score=154.35 Aligned_cols=65 Identities=48% Similarity=0.712 Sum_probs=61.6
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 71 d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
|||+||||+++|+.++||+|||+|+++||||+++ ++++.+.|++|++||+||+|+.+|..||.++
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g 65 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFG 65 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhcc
Confidence 7999999999999999999999999999999987 3668899999999999999999999999865
No 35
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=3.7e-16 Score=154.39 Aligned_cols=66 Identities=38% Similarity=0.560 Sum_probs=62.8
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 70 ~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
.|||+||||+++||.++||+|||+|+++||||++++ +.+++.|+.|++||+||+||.+|..||.++
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~-~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G 67 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE-KGAAEKFAQINEAYAVLSDAEKRAHYDRFG 67 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-hhHHHHHHHHHHHHHHhcchhhhhhHhhcC
Confidence 599999999999999999999999999999999975 678899999999999999999999999875
No 36
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=3.2e-16 Score=154.91 Aligned_cols=66 Identities=35% Similarity=0.581 Sum_probs=62.4
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 70 ~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
.|||+||||+++||.+|||+|||+|+++||||+++. +.+++.|++|++||+||+|+.+|..||.++
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G 68 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA-KDAEKKFKEINAAYDVLKDEQKRAAYDRFG 68 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhhhHhHhhHHHhcc
Confidence 699999999999999999999999999999999874 667889999999999999999999999975
No 37
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.62 E-value=4.5e-16 Score=150.10 Aligned_cols=66 Identities=35% Similarity=0.632 Sum_probs=62.6
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 70 ~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
.|||+||||++++|.+|||+|||+|+++||||++.. +.+++.|++|++||+||+||.+|..||.++
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~-~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g 69 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSDEQRRAEYDQLW 69 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 699999999999999999999999999999999865 678999999999999999999999999875
No 38
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=5.3e-16 Score=153.45 Aligned_cols=67 Identities=39% Similarity=0.684 Sum_probs=63.0
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
..|||+||||+++||.+|||+|||+|+++||||+++. +.+++.|..|++||+||+||.+|..||.++
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g 68 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-PGAEDRFKEINRAYEVLSDPETRARYDQFG 68 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-cCHHHHHHHHHHHHHHHhchHHHHHHhhcc
Confidence 3699999999999999999999999999999999875 668899999999999999999999999875
No 39
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.61 E-value=1.2e-15 Score=111.63 Aligned_cols=58 Identities=43% Similarity=0.622 Sum_probs=54.2
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-ChHHHHHHHHHHHHHHHhcChh
Q 019486 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGD-DPETTNFCMFINEVYAVLSDPV 127 (340)
Q Consensus 70 ~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~-~~~~~~~f~~i~~Ay~vLsdp~ 127 (340)
.|||+||||+++++.++||++|+++++++|||++++ .+.+.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 489999999999999999999999999999999885 4678899999999999999985
No 40
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=7e-16 Score=151.86 Aligned_cols=72 Identities=38% Similarity=0.486 Sum_probs=64.7
Q ss_pred CCCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC---hHHHHHHHHHHHHHHHhcChhhhhhhcccccc
Q 019486 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD---PETTNFCMFINEVYAVLSDPVQRMVYDEIHGY 138 (340)
Q Consensus 67 ~~~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~---~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 138 (340)
....|||.+|||+++||.+|||+|||++++.||||+..+. ..+++.|+.|.+||||||||++|..||.+|..
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~q 80 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQ 80 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhc
Confidence 3456999999999999999999999999999999998752 35789999999999999999999999998643
No 41
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.59 E-value=3e-15 Score=107.58 Aligned_cols=55 Identities=53% Similarity=0.788 Sum_probs=51.8
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcC
Q 019486 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSD 125 (340)
Q Consensus 71 d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd 125 (340)
|||+||||+++++.++||++|++|++++|||++++...+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999988656688999999999999986
No 42
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.1e-15 Score=139.05 Aligned_cols=72 Identities=38% Similarity=0.520 Sum_probs=65.1
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCC--CChHHHHHHHHHHHHHHHhcChhhhhhhccccccc
Q 019486 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSG--DDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYS 139 (340)
Q Consensus 68 ~~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~--~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~ 139 (340)
...|+|+||||..+|+..+|++|||+|++++|||+++ ...++.+.|++|+.||+||+|.++|+.||..|...
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 3459999999999999999999999999999999994 34578899999999999999999999999986543
No 43
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.58 E-value=1.8e-15 Score=160.16 Aligned_cols=69 Identities=22% Similarity=0.347 Sum_probs=64.4
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhccccc
Q 019486 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (340)
Q Consensus 68 ~~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 137 (340)
...+||+||||+++||..+||+|||+||++||||+++++ .+.+.|+.|++||+|||||.+|..||.+|.
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~ 639 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGY 639 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccc
Confidence 457999999999999999999999999999999999874 678899999999999999999999999763
No 44
>PHA03102 Small T antigen; Reviewed
Probab=99.52 E-value=9.6e-15 Score=127.03 Aligned_cols=64 Identities=23% Similarity=0.323 Sum_probs=59.2
Q ss_pred CCchhhcCCCCCC--CHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhccccc
Q 019486 70 DDYYAVLGLLPDA--TPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (340)
Q Consensus 70 ~d~Y~vLgv~~~a--s~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 137 (340)
..+|+||||+++| |.++||+|||++++++|||++++ .+.|+.||+||++|+|+.+|..||.++.
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~ 70 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEE 70 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCC
Confidence 4689999999999 99999999999999999999654 5799999999999999999999999764
No 45
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.9e-14 Score=129.89 Aligned_cols=72 Identities=29% Similarity=0.421 Sum_probs=66.1
Q ss_pred CCCCCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 65 TDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 65 ~~~~~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
......|+|+||||++++|..|||+|||+|+++|||||++...+.++.|..|++||+.|+|+..|..|..++
T Consensus 94 ~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG 165 (230)
T KOG0721|consen 94 RERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYG 165 (230)
T ss_pred HHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhC
Confidence 445667999999999999999999999999999999998775667889999999999999999999999875
No 46
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.5e-14 Score=127.91 Aligned_cols=68 Identities=44% Similarity=0.671 Sum_probs=64.2
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChH-HHHHHHHHHHHHHHhcChhhhhhhccc
Q 019486 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPE-TTNFCMFINEVYAVLSDPVQRMVYDEI 135 (340)
Q Consensus 68 ~~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~-~~~~f~~i~~Ay~vLsdp~~R~~YD~~ 135 (340)
...+||+||||.++|+..+|+++||+++++||||+++.++. +.+.|..|++||+||+|+..|..||..
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 45699999999999999999999999999999999998775 899999999999999999999999985
No 47
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.47 E-value=6.1e-14 Score=145.83 Aligned_cols=66 Identities=41% Similarity=0.631 Sum_probs=62.7
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 70 ~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
.|||+||||+++|+.++||++||+|+++||||++++ +.+.+.|+.|++||++|+||.+|..||.++
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG 67 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYG 67 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhc
Confidence 599999999999999999999999999999999877 678889999999999999999999999875
No 48
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.42 E-value=2.6e-13 Score=120.57 Aligned_cols=66 Identities=24% Similarity=0.434 Sum_probs=58.0
Q ss_pred CCchhhcCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCChH-----HHHHHHHHHHHHHHhcChhhhhhhccc
Q 019486 70 DDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDPVQRMVYDEI 135 (340)
Q Consensus 70 ~d~Y~vLgv~~~--as~~eIk~AYr~la~~~HPD~~~~~~~-----~~~~f~~i~~Ay~vLsdp~~R~~YD~~ 135 (340)
.|||+||||++. ++..+|+++||++++++|||+..+.+. +.+.|..||+||+||+||.+|..|+..
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~ 73 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLS 73 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHH
Confidence 389999999985 788999999999999999999766432 456889999999999999999999853
No 49
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.39 E-value=7e-13 Score=118.32 Aligned_cols=68 Identities=25% Similarity=0.425 Sum_probs=58.6
Q ss_pred CCCCchhhcCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCChHHH-----HHHHHHHHHHHHhcChhhhhhhccc
Q 019486 68 IADDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPETT-----NFCMFINEVYAVLSDPVQRMVYDEI 135 (340)
Q Consensus 68 ~~~d~Y~vLgv~~~--as~~eIk~AYr~la~~~HPD~~~~~~~~~-----~~f~~i~~Ay~vLsdp~~R~~YD~~ 135 (340)
...|||+||||++. ++..+|+++||+|++++|||++.+.+..+ +.+..||+||++|+||.+|..|+..
T Consensus 4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~ 78 (176)
T PRK03578 4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLH 78 (176)
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHH
Confidence 34799999999985 68999999999999999999987655433 3458999999999999999999863
No 50
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.38 E-value=6.3e-13 Score=117.56 Aligned_cols=66 Identities=24% Similarity=0.444 Sum_probs=57.2
Q ss_pred CCchhhcCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCChH---HHHHHHHHHHHHHHhcChhhhhhhccc
Q 019486 70 DDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPE---TTNFCMFINEVYAVLSDPVQRMVYDEI 135 (340)
Q Consensus 70 ~d~Y~vLgv~~~--as~~eIk~AYr~la~~~HPD~~~~~~~---~~~~f~~i~~Ay~vLsdp~~R~~YD~~ 135 (340)
.|||+||||++. ++..+|+++||++++++|||++.+..+ +...+..||+||+||+||.+|..|+..
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~ 72 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLL 72 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 589999999986 789999999999999999999875322 234578999999999999999999864
No 51
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.38 E-value=8.6e-13 Score=117.37 Aligned_cols=68 Identities=26% Similarity=0.384 Sum_probs=60.1
Q ss_pred CCCCchhhcCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCChH-----HHHHHHHHHHHHHHhcChhhhhhhccc
Q 019486 68 IADDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDPVQRMVYDEI 135 (340)
Q Consensus 68 ~~~d~Y~vLgv~~~--as~~eIk~AYr~la~~~HPD~~~~~~~-----~~~~f~~i~~Ay~vLsdp~~R~~YD~~ 135 (340)
...|||++|||++. .+..+|+++||+|++++|||++.+.+. +.+.+..||+||+||+||.+|..|+..
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~ 76 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLA 76 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 45799999999986 678999999999999999999876543 456789999999999999999999964
No 52
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.6e-12 Score=128.42 Aligned_cols=69 Identities=28% Similarity=0.377 Sum_probs=64.8
Q ss_pred CCCCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhccc
Q 019486 66 DAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEI 135 (340)
Q Consensus 66 ~~~~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~ 135 (340)
.....|+|.+|||+.+++.++||+.||++|...|||||.. +.+++.|+.|+.||++|+|+++|..||..
T Consensus 231 e~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~-~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 231 ELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI-PRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred hhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC-hhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 3457899999999999999999999999999999999995 88999999999999999999999999964
No 53
>PRK06991 ferredoxin; Provisional
Probab=99.31 E-value=4.4e-12 Score=120.18 Aligned_cols=139 Identities=23% Similarity=0.309 Sum_probs=87.4
Q ss_pred CCccccccccccCCCCcccCCCCcccccccCCceEEcc-CCCCHHHHHHHHHcCCccceecccccchhhhHHHHHHHhhh
Q 019486 153 KDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYN-QCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERV 231 (340)
Q Consensus 153 ~~~vfvDe~~CiGCg~C~~v~P~~F~iedd~G~a~vv~-q~g~~E~v~eAv~~CPv~cI~~~~~~~l~~Le~~~~~~~~~ 231 (340)
...+.+++..|++|+.|..+||...+.....+...+.. .+..+. .|+..||++||.+.+...
T Consensus 77 ~~~~~id~~~CigCg~Cv~aCP~~AI~~~~~~~~~v~~~~CigCg---~Cv~vCP~~AI~~~~~~~-------------- 139 (270)
T PRK06991 77 RAVAVIDEQLCIGCTLCMQACPVDAIVGAPKQMHTVLADLCTGCD---LCVPPCPVDCIDMVPVTG-------------- 139 (270)
T ss_pred cceeEEccccCCCCcHHHHhCCHhheecccccceeeCHhhCCCch---HHHhhCCcCCeEeecCcc--------------
Confidence 34456789999999999999996654322224333332 255554 499999999999864421
Q ss_pred hhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH---hhcccccCccccccccccCCCCCCCCCcHHHHHHHHHHH
Q 019486 232 NVAMMLSGMGSGSADVFRMASSRWERRQAKVLEQAKIR---MMNREKDSDKTVSYWSNIWGKPKDYRNSEEEVKERSKRA 308 (340)
Q Consensus 232 ~~~~~~~g~~~~~~~~~~~a~~~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 308 (340)
...+|+.|....++.|+.||+.|+.|+.++.+++ +.+..+....... ..-..|........+++|+|+|+
T Consensus 140 ----~~~~~~~~~~~~a~~ar~r~~~r~~Rl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~a~i~ 212 (270)
T PRK06991 140 ----ERTGWDAWSQAQADAARARHDARQARLRREREAAEARAAARAAASAAAAA---AEASAAAAPAADDAEAKKRAIIA 212 (270)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---cccccccccccchhhhHHHHHHH
Confidence 1257777888889999999999999987543333 2222221111000 00011233334555677999999
Q ss_pred HHHHHHH
Q 019486 309 AAAARRW 315 (340)
Q Consensus 309 a~~~r~~ 315 (340)
|||+|-=
T Consensus 213 aa~~ra~ 219 (270)
T PRK06991 213 AALERAR 219 (270)
T ss_pred HHHHHHH
Confidence 9999864
No 54
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.31 E-value=3.8e-12 Score=122.45 Aligned_cols=68 Identities=32% Similarity=0.472 Sum_probs=62.4
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCh---HHHHHHHHHHHHHHHhcChhhhhhhccc
Q 019486 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP---ETTNFCMFINEVYAVLSDPVQRMVYDEI 135 (340)
Q Consensus 68 ~~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~---~~~~~f~~i~~Ay~vLsdp~~R~~YD~~ 135 (340)
..+|||.||||.++|+..||-+|||+++.++|||-..+.. .++.+|.-|-.|-+||+||++|+.||..
T Consensus 392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG 462 (504)
T KOG0624|consen 392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG 462 (504)
T ss_pred ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence 4579999999999999999999999999999999987743 3688999999999999999999999974
No 55
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.28 E-value=5.4e-12 Score=104.73 Aligned_cols=55 Identities=29% Similarity=0.411 Sum_probs=48.7
Q ss_pred CCCCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhc
Q 019486 66 DAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLS 124 (340)
Q Consensus 66 ~~~~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLs 124 (340)
.....++|+||||++++|.+|||++||+|++++|||+.+ +.+.|.+|++||++|.
T Consensus 61 ~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG----s~~~~~kIneAyevL~ 115 (116)
T PTZ00100 61 PMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG----STYIASKVNEAKDLLL 115 (116)
T ss_pred CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHHHh
Confidence 334579999999999999999999999999999999853 3578899999999995
No 56
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4.1e-12 Score=117.17 Aligned_cols=67 Identities=34% Similarity=0.552 Sum_probs=62.3
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhccc
Q 019486 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEI 135 (340)
Q Consensus 68 ~~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~ 135 (340)
...|.|+||||..+++..+|.+|||+|++++|||++.+ ++..+.|..|-.||++|.|...|..||-.
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~-~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD-PESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC-chhhhhhhhhhcccccccchhhHHhHHHH
Confidence 34699999999999999999999999999999999998 66679999999999999999999999943
No 57
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.9e-11 Score=113.63 Aligned_cols=123 Identities=27% Similarity=0.369 Sum_probs=92.8
Q ss_pred CCCCCCCCchhhcCCC---CCCCHHHHHHHHHHHHHhcCCCCC--CCChHHHHHHHHHHHHHHHhcChhhhhhhcccccc
Q 019486 64 STDAIADDYYAVLGLL---PDATPEQIKKAYYNCMKACHPDLS--GDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGY 138 (340)
Q Consensus 64 ~~~~~~~d~Y~vLgv~---~~as~~eIk~AYr~la~~~HPD~~--~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~ 138 (340)
...|...|+|.+|||+ ..+++.+|.++.++.+.+||||+. +++-+..++|..|+.||+||+|+.+|..||...
T Consensus 37 ~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d-- 114 (379)
T COG5269 37 FKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND-- 114 (379)
T ss_pred hhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc--
Confidence 4567789999999998 478999999999999999999986 333557899999999999999999999999752
Q ss_pred cccccCCCCCCCCCCCccccccccccCCCCcccCCCCcccccccCCceEEccCCCCHHHHHHHHH
Q 019486 139 SLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIE 203 (340)
Q Consensus 139 ~~~~ldp~~~~~~p~~~vfvDe~~CiGCg~C~~v~P~~F~iedd~G~a~vv~q~g~~E~v~eAv~ 203 (340)
++..-|...++.++.+ +.+...+|.-+..|.....++..|..+....-|+
T Consensus 115 --------f~advppp~~~t~~~F-------fe~w~pvFe~earFSkKqPvPsLg~~dss~keVe 164 (379)
T COG5269 115 --------FDADVPPPRIYTPDEF-------FEVWEPVFEREARFSKKQPVPSLGPSDSSLKEVE 164 (379)
T ss_pred --------cccCCCCccCCCchhH-------HHHHHHHHHhhhhccccCCCCCCCCchhHHHHHH
Confidence 2222233333333333 2455566888999998888888877665444443
No 58
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.4e-11 Score=119.11 Aligned_cols=68 Identities=32% Similarity=0.557 Sum_probs=64.0
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC-hHHHHHHHHHHHHHHHhcChhhhhhhccc
Q 019486 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEI 135 (340)
Q Consensus 68 ~~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~-~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~ 135 (340)
...|||.|||+..+++..|||++||++++.+|||++.++ .+++..|+.|-+||.+|+||.+|..||..
T Consensus 371 kRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg 439 (486)
T KOG0550|consen 371 KRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG 439 (486)
T ss_pred hhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence 457999999999999999999999999999999999886 67889999999999999999999999975
No 59
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=2.7e-11 Score=113.32 Aligned_cols=69 Identities=38% Similarity=0.563 Sum_probs=62.1
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC-hHHHHHHHHHHHHHHHhcChhhhhhhccccc
Q 019486 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (340)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~-~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~~ 137 (340)
..|||.||||..+|+.++|++||+++++++|||+++.. ..+...|.+|.+||+||+|+.+|..||.++.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 46999999999999999999999999999999997774 2445589999999999999999999999874
No 60
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.15 E-value=4.9e-11 Score=113.08 Aligned_cols=59 Identities=25% Similarity=0.386 Sum_probs=51.8
Q ss_pred CCCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC-------hHHHHHHHHHHHHHHHhcC
Q 019486 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-------PETTNFCMFINEVYAVLSD 125 (340)
Q Consensus 67 ~~~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~-------~~~~~~f~~i~~Ay~vLsd 125 (340)
....++|+||||++++|.++||++||+|+++||||+..+. +.+++.|++|++||++|+.
T Consensus 197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 3457999999999999999999999999999999996431 3468899999999999974
No 61
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=99.11 E-value=3.9e-11 Score=90.50 Aligned_cols=58 Identities=40% Similarity=0.753 Sum_probs=48.0
Q ss_pred ccccccccccCCCCcccCCCCcccccccCCceEEccC------C--CCHHHHHHHHHcCCccceecc
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ------C--GINEFVQQAIESCPVDCIHRT 213 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~F~iedd~G~a~vv~q------~--g~~E~v~eAv~~CPv~cI~~~ 213 (340)
.+.+|...|||||.|...||++|.++++ |.+.+... . ...+.+++|+.+||++||+|.
T Consensus 2 ~v~vDrd~Cigcg~C~~~aPdvF~~~d~-G~a~~~~~~~~~~~~~~e~~~~~~~A~~~CP~~aI~v~ 67 (68)
T COG1141 2 RVIVDRDTCIGCGACLAVAPDVFDYDDE-GIAFVLDGNIGEGEVPEELEEDAEDAAEACPTDAIKVE 67 (68)
T ss_pred EEEechhhccccchhhhcCCcceeeCCC-cceEeccCccccccCChHHHHHHHHHHHhCCccceEec
Confidence 3678999999999999999999999998 87755222 2 233689999999999999985
No 62
>PHA02624 large T antigen; Provisional
Probab=99.11 E-value=7.3e-11 Score=121.71 Aligned_cols=60 Identities=28% Similarity=0.398 Sum_probs=55.9
Q ss_pred CCCchhhcCCCCCC--CHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhh
Q 019486 69 ADDYYAVLGLLPDA--TPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVY 132 (340)
Q Consensus 69 ~~d~Y~vLgv~~~a--s~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~Y 132 (340)
..++|++|||+++| +.++||+|||+++++||||++++ ++.|++|++||++|+|+.++..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd----eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc----HHHHHHHHHHHHHHhcHHHhhhc
Confidence 45899999999999 99999999999999999999643 67999999999999999999998
No 63
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=99.04 E-value=1.1e-10 Score=87.32 Aligned_cols=56 Identities=46% Similarity=0.825 Sum_probs=48.1
Q ss_pred cccccccccCCCCcccCCCCcccccccCCceEEccC---------CCCHHHHHHHHHcCCccceec
Q 019486 156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ---------CGINEFVQQAIESCPVDCIHR 212 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~~F~iedd~G~a~vv~q---------~g~~E~v~eAv~~CPv~cI~~ 212 (340)
|++|...|+||+.|...+|++|.++++ |.+.++.. ....+.+++|+..||++||+|
T Consensus 1 V~vD~~~C~gcg~C~~~aP~vF~~d~~-g~a~~~~~~~~~~~~v~~~~~~~~~~Aa~~CP~~aI~v 65 (65)
T PF13459_consen 1 VWVDRDRCIGCGLCVELAPEVFELDDD-GKAVVLVDGGEGEGEVPEEDEEDVREAAEACPVGAIHV 65 (65)
T ss_pred CEEecccCcCccHHHhhCCccEEECCC-CCEEEEecCcccccCCCchhHHHHHHHHHhCCHhhEEC
Confidence 468999999999999999999999988 88776642 334578999999999999986
No 64
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.04 E-value=4.3e-10 Score=100.12 Aligned_cols=65 Identities=20% Similarity=0.298 Sum_probs=56.6
Q ss_pred CCchhhcCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCChH-----HHHHHHHHHHHHHHhcChhhhhhhcc
Q 019486 70 DDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDPVQRMVYDE 134 (340)
Q Consensus 70 ~d~Y~vLgv~~~--as~~eIk~AYr~la~~~HPD~~~~~~~-----~~~~f~~i~~Ay~vLsdp~~R~~YD~ 134 (340)
.|||++|||++. .+...+++.|+.|.+++|||+..+.+. +.+....||+||.+|+||.+|..|=.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 599999999975 899999999999999999999876543 34456789999999999999999953
No 65
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=98.99 E-value=1.1e-10 Score=85.64 Aligned_cols=55 Identities=42% Similarity=0.718 Sum_probs=39.8
Q ss_pred cccccccCCCCcccCCCCcccccccCCceEEccCCC---CHHHHHHHHHcCCccceec
Q 019486 158 VDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCG---INEFVQQAIESCPVDCIHR 212 (340)
Q Consensus 158 vDe~~CiGCg~C~~v~P~~F~iedd~G~a~vv~q~g---~~E~v~eAv~~CPv~cI~~ 212 (340)
||...||+||.|..++|++|.++++-|.+.++.+.. ..+.+++|+..||+.||++
T Consensus 1 VD~~~Ci~Cg~C~~~aP~vF~~~d~~~~~~v~~~~~~~~~~~~~~~A~~~CP~~aI~v 58 (58)
T PF13370_consen 1 VDRDKCIGCGLCVEIAPDVFDYDDDGGKAVVLDQPVPEEEEEAAREAAESCPTAAIRV 58 (58)
T ss_dssp E-TTT--S-SHHHHH-TTTEEEETTSTEEECTTCCCSHCHHHHHHHHHHHSTT--EEE
T ss_pred CChhhCcCCChHHHhCcHheeEcCCCCeEEEeCCCcChHHHHHHHHHHHcCCHhhcCC
Confidence 467889999999999999999999866777777732 2357999999999999985
No 66
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.89 E-value=1.2e-09 Score=107.84 Aligned_cols=69 Identities=28% Similarity=0.338 Sum_probs=62.3
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-----ChHHHHHHHHHHHHHHHhcChhhhhhhcccc
Q 019486 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGD-----DPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (340)
Q Consensus 68 ~~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~-----~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~ 136 (340)
..-|+|+|||++.+++..+||++||+|+.+|||||.++ ..+-++.+.+|++||..|+|...|..|-.+|
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yG 169 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYG 169 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcC
Confidence 45699999999999999999999999999999999776 2456889999999999999999999997763
No 67
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=3.2e-09 Score=95.13 Aligned_cols=69 Identities=25% Similarity=0.346 Sum_probs=62.4
Q ss_pred CCCCCCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC-hHHHHHHHHHHHHHHHhcChhhhhhh
Q 019486 64 STDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVY 132 (340)
Q Consensus 64 ~~~~~~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~-~~~~~~f~~i~~Ay~vLsdp~~R~~Y 132 (340)
++.....|+|+||.|.++.+.++||+.||+|++..|||+|+++ +-+...|-.|.+||.+|-|+..|..-
T Consensus 47 gstyfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~ 116 (250)
T KOG1150|consen 47 GSTYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRC 116 (250)
T ss_pred CccccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 4556789999999999999999999999999999999999998 56888999999999999999876643
No 68
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.84 E-value=5e-09 Score=91.97 Aligned_cols=55 Identities=20% Similarity=0.339 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCh-----HHHHHHHHHHHHHHHhcChhhhhhhccc
Q 019486 81 DATPEQIKKAYYNCMKACHPDLSGDDP-----ETTNFCMFINEVYAVLSDPVQRMVYDEI 135 (340)
Q Consensus 81 ~as~~eIk~AYr~la~~~HPD~~~~~~-----~~~~~f~~i~~Ay~vLsdp~~R~~YD~~ 135 (340)
+.+..+|+++||+|++++|||+..+.+ .+...+..||+||+||+||.+|..|+..
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~ 61 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS 61 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 357889999999999999999865532 2567889999999999999999999965
No 69
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=5.3e-09 Score=95.62 Aligned_cols=58 Identities=21% Similarity=0.436 Sum_probs=51.8
Q ss_pred CCCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHH-HhcC
Q 019486 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYA-VLSD 125 (340)
Q Consensus 67 ~~~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~-vLsd 125 (340)
..-..||.+|||..+++.++++.+|..|++++|||...+ ..+.+.|++|.+||. ||+.
T Consensus 44 e~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~-~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 44 EKIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE-EADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc-cccHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999999999999999999766 567889999999997 8864
No 70
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=98.42 E-value=3.2e-08 Score=87.58 Aligned_cols=62 Identities=24% Similarity=0.549 Sum_probs=54.4
Q ss_pred CCCCccccccccccCCCCcccCCCCcccccccCCceEEccC-CCCHHHHHHHHHcCCccceecccc
Q 019486 151 CPKDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ-CGINEFVQQAIESCPVDCIHRTSA 215 (340)
Q Consensus 151 ~p~~~vfvDe~~CiGCg~C~~v~P~~F~iedd~G~a~vv~q-~g~~E~v~eAv~~CPv~cI~~~~~ 215 (340)
..+...+++|..||||+.|++.||.+.++....+++.|+.+ +.++++ +|..||++||.+...
T Consensus 105 ~~~~va~i~e~~ciGCtkCiqaCpvdAivg~~~~mhtv~~dlCTGC~l---Cva~CPtdci~m~~~ 167 (198)
T COG2878 105 QARMVALIDEANCIGCTKCIQACPVDAIVGATKAMHTVIADLCTGCDL---CVAPCPTDCIEMQPV 167 (198)
T ss_pred ccceeeEecchhccccHHHHHhCChhhhhccchhHHHHHHHHhcCCCc---ccCCCCCCceeeeec
Confidence 44567789999999999999999999999888889999887 777777 999999999997643
No 71
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.7e-06 Score=92.86 Aligned_cols=58 Identities=22% Similarity=0.387 Sum_probs=49.0
Q ss_pred CCCCCCCchhhcCCCC----CCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcC
Q 019486 65 TDAIADDYYAVLGLLP----DATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSD 125 (340)
Q Consensus 65 ~~~~~~d~Y~vLgv~~----~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd 125 (340)
......+.|+||.|+- .-..+.||++|++|+.+||||||+. .-++|..+|+||+.|+.
T Consensus 1276 ~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE---GRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1276 ATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE---GREMFERVNKAYELLSS 1337 (2235)
T ss_pred CccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHHHHHHH
Confidence 3445568999999983 3455889999999999999999865 88999999999999983
No 72
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=4.4e-06 Score=67.90 Aligned_cols=66 Identities=26% Similarity=0.335 Sum_probs=55.2
Q ss_pred cccccCCCCCCCCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCh
Q 019486 57 VTAEDSASTDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDP 126 (340)
Q Consensus 57 ~~~~~~~~~~~~~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp 126 (340)
......+.+.+....--.||||.++++.+.||.|+|++++..|||+.+. | -.-.+||||+++|...
T Consensus 43 ~~y~GGF~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS-P---YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 43 AFYKGGFEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS-P---YLASKINEAKDLLEGT 108 (112)
T ss_pred hhhhcccccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC-H---HHHHHHHHHHHHHhcc
Confidence 3444566677777889999999999999999999999999999999776 3 3446899999999754
No 73
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=97.81 E-value=3.7e-06 Score=61.87 Aligned_cols=52 Identities=31% Similarity=0.711 Sum_probs=29.1
Q ss_pred ccccccccCCCCcccCCCC----cccccccCCceEEccC-CCCHHHHHHHHHcCCc-cceec
Q 019486 157 FVDEFSCIGCKNCNNVAPE----VFKIEEDFGRARVYNQ-CGINEFVQQAIESCPV-DCIHR 212 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~----~F~iedd~G~a~vv~q-~g~~E~v~eAv~~CPv-~cI~~ 212 (340)
.+|+..|||||.|+.+||. .+.++++ +...+..+ +-++.+ ++..||| +||+|
T Consensus 2 ~Id~~~Ci~Cg~C~~~Cp~~~~~~i~~~~~-~~~~v~~~~C~GCg~---C~~~CPv~~AI~m 59 (59)
T PF14697_consen 2 VIDEDKCIGCGKCVRACPDGAIDAIEVDEG-KKVPVNPDKCIGCGL---CVKVCPVKDAITM 59 (59)
T ss_dssp EE-TTT----SCCCHHCCCCS-S-ECCTTT-TSSECE-TT--S-SC---CCCCSSSTTSEEE
T ss_pred EECcccccChhhHHhHcCccceeeEEecCC-eeEEeccccCcCcCc---ccccCCCccCCCC
Confidence 4789999999999999996 2333333 33333322 334444 8899998 99985
No 74
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=97.70 E-value=1.8e-05 Score=84.24 Aligned_cols=95 Identities=23% Similarity=0.283 Sum_probs=53.0
Q ss_pred ccccccCCCCcccCCCCcccc--------cccCCceEEccCCCCHHHHHHHHHcCCccceecccccchhhhHHHHHHHhh
Q 019486 159 DEFSCIGCKNCNNVAPEVFKI--------EEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVER 230 (340)
Q Consensus 159 De~~CiGCg~C~~v~P~~F~i--------edd~G~a~vv~q~g~~E~v~eAv~~CPv~cI~~~~~~~l~~Le~~~~~~~~ 230 (340)
++..||+||.|..+||..-.. ..++.....+. ..+|..|..|...||.+ |.++ +.. +
T Consensus 368 ~e~~CI~CG~Cv~aCP~~llP~~l~~~~~~~d~~~~~~~~-~~~CieCG~C~~vCPs~-Iplv--------~~~-----r 432 (695)
T PRK05035 368 PEQPCIRCGACADACPASLLPQQLYWFAKAEEHDKAQEYN-LFDCIECGACAYVCPSN-IPLV--------QYY-----R 432 (695)
T ss_pred chhhcCCcccHHHHCCccchhhhHHHhhhccccchhhhcC-hhhccccCcccccCCCC-CcHH--------HHH-----H
Confidence 678899999999999976431 12222211111 12233345588999987 4432 110 0
Q ss_pred hhhhhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019486 231 VNVAMMLSGMGSGSADVFRMASSRWERRQAKVLEQAKIRM 270 (340)
Q Consensus 231 ~~~~~~~~g~~~~~~~~~~~a~~~~~~r~~~~~~~~~~~~ 270 (340)
..-+.+. . ..+....++.|+.|||.|++|+.++.+++.
T Consensus 433 ~aK~~i~-~-~~~~~~~a~~ar~r~e~r~~R~~r~~~~~~ 470 (695)
T PRK05035 433 QAKAEIR-A-IEQEKKKAEEAKARFEARQARLEREKAARE 470 (695)
T ss_pred HHHHHHH-H-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 0 112345677899999999999886555443
No 75
>PF06902 Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro: IPR010693 This entry represents bacterial ferredoxins such Ferredoxin-1, -2 and -soy from Streptomyces griseolus and Ferredoxin fas2 from Rhodococcus fascians, plus several bacterial hypothetical proteins that contain three highly conserved cysteine residues. These ferredoxins each bind a 3Fe-4S cluster. Ferredoxin-soy (SoyB) act as electron transport protein for the cytochrome P450-SOY system []. Ferredoxin-1 (SuaB) and Ferredoxin-2 (SubB) act as electron transport proteins for the herbicide-metabolising cytochrome P-450 SU1 and SU2 systems, respectively [, ]. Ferredoxin-fas2 also plays a role in electrontransfer, the fas operon encoding genes involved in cytokinin production and in host plant fasciation (leafy gall).
Probab=97.35 E-value=0.00022 Score=53.39 Aligned_cols=58 Identities=26% Similarity=0.370 Sum_probs=47.2
Q ss_pred CccccccccccCCCCcccCCCCcccccccCCceEEccCCCCHHHHHHHHHcCCccceeccc
Q 019486 154 DHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (340)
Q Consensus 154 ~~vfvDe~~CiGCg~C~~v~P~~F~iedd~G~a~vv~q~g~~E~v~eAv~~CPv~cI~~~~ 214 (340)
-.+..|...|++-|.|....|.+|.++++ |-. .......+.+.++++.||..||.+.+
T Consensus 6 i~V~~d~~~C~hag~Cv~~~p~VFd~~~~-~~v--~~d~a~~~~v~~~v~~CPSGAL~~~~ 63 (64)
T PF06902_consen 6 ITVTWDRERCIHAGFCVRGAPEVFDQDDE-PWV--SPDEASAEEVREAVDRCPSGALSYWD 63 (64)
T ss_pred EEEEECcCcccchhhhhcCCCCcccCCCC-CcC--CcCccCHHHHHHHHHcCCccCcEEee
Confidence 35667889999999999999999999876 533 33355678999999999999998753
No 76
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=97.19 E-value=9.5e-05 Score=65.89 Aligned_cols=64 Identities=27% Similarity=0.478 Sum_probs=43.6
Q ss_pred CCccccccccccCCCCcccCCCCccc-cccc----CCceEE-ccC--CCCHHHHHHHHHcCCccceeccccc
Q 019486 153 KDHVFVDEFSCIGCKNCNNVAPEVFK-IEED----FGRARV-YNQ--CGINEFVQQAIESCPVDCIHRTSAQ 216 (340)
Q Consensus 153 ~~~vfvDe~~CiGCg~C~~v~P~~F~-iedd----~G~a~v-v~q--~g~~E~v~eAv~~CPv~cI~~~~~~ 216 (340)
+....++...||||+.|..+||...+ |... -|..++ ..+ .|-|--+..|++.|||+||.++..-
T Consensus 47 RG~~~l~~~~CIgC~lCa~iCP~~aI~m~~~~~~~~g~~~~~~~~In~grCIfCg~C~e~CPt~Al~~t~~~ 118 (172)
T COG1143 47 RGRHVLDRDKCIGCGLCANICPANAITMETAERKVDGRKKPKRPDINLGRCIFCGLCVEVCPTGALVLTPEF 118 (172)
T ss_pred cceeeccccCCcchhHHHhhCCcCceEEEEcccCCCCccccccceeccccccccCchhhhCchhhhcCCcce
Confidence 44556778889999999999998753 4321 133222 112 4555566679999999999987653
No 77
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=97.17 E-value=0.00013 Score=57.77 Aligned_cols=58 Identities=33% Similarity=0.508 Sum_probs=42.6
Q ss_pred ccccccccccCCCCcccCCCCcccccccCCceE--EccCCCCHHHHHHHHHcCCccceecccc
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRAR--VYNQCGINEFVQQAIESCPVDCIHRTSA 215 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~F~iedd~G~a~--vv~q~g~~E~v~eAv~~CPv~cI~~~~~ 215 (340)
...+|+..|+.|+.|+..||+..++..+.|... -++-+-++.. ++..||++||.|+..
T Consensus 29 rPv~d~~kCi~C~~C~~yCPe~~i~~~~~~~~~~idYdyCKGCGI---Ca~vCP~kaI~Mv~E 88 (91)
T COG1144 29 RPVVDEDKCINCKLCWLYCPEPAILEEEGGYKVRIDYDYCKGCGI---CANVCPVKAIEMVRE 88 (91)
T ss_pred eeEEcccccccCceeEEECCchheeeccCCccceeEcccccCcee---chhhCChhheEeEee
Confidence 346799999999999999999976655534332 2333444444 889999999999754
No 78
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.00051 Score=59.71 Aligned_cols=66 Identities=24% Similarity=0.493 Sum_probs=53.8
Q ss_pred CCCCchhhcCCC--CCCCHHHHHHHHHHHHHhcCCCCCCCC-----hHHHHHHHHHHHHHHHhcChhhhhhhc
Q 019486 68 IADDYYAVLGLL--PDATPEQIKKAYYNCMKACHPDLSGDD-----PETTNFCMFINEVYAVLSDPVQRMVYD 133 (340)
Q Consensus 68 ~~~d~Y~vLgv~--~~as~~eIk~AYr~la~~~HPD~~~~~-----~~~~~~f~~i~~Ay~vLsdp~~R~~YD 133 (340)
...+||.++|.. ....++.++.-|....+++|||+.+.. ..+.+...+||+||.+|.||-.|+.|=
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yi 78 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYL 78 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 456899999876 445677777799999999999985442 235677889999999999999999994
No 79
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=97.11 E-value=0.0003 Score=58.76 Aligned_cols=60 Identities=20% Similarity=0.463 Sum_probs=41.3
Q ss_pred CccccccccccCCCCcccCCCCcc-cccccCCceEEccCCCCHHHHHHHHHcCCccceecccc
Q 019486 154 DHVFVDEFSCIGCKNCNNVAPEVF-KIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (340)
Q Consensus 154 ~~vfvDe~~CiGCg~C~~v~P~~F-~iedd~G~a~vv~q~g~~E~v~eAv~~CPv~cI~~~~~ 215 (340)
..+.++...|++|+.|..+||... .+..+.+ ...+. .+.+..+..|++.||++||.+...
T Consensus 35 g~i~i~~~~Ci~C~~C~~~CP~~ai~~~~~~~-~~~i~-~~~C~~Cg~Cv~~CP~~Ai~~~~~ 95 (120)
T PRK08348 35 GKILYDVDKCVGCRMCVTVCPAGVFVYLPEIR-KVALW-TGRCVFCGQCVDVCPTGALQMSDD 95 (120)
T ss_pred ceEEECcccCcCcccHHHHCCccceEcccccc-ceEec-CCcCcChhhhHHhCCcCcEEeccc
Confidence 456788999999999999999754 3333212 12222 233445667999999999998653
No 80
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=97.06 E-value=0.00012 Score=64.07 Aligned_cols=76 Identities=26% Similarity=0.391 Sum_probs=48.9
Q ss_pred ccccccCCCCCCCCCCCccccccccccCCCCcccCCCCccc-cc----ccCCceEEcc---CCCCHHHHHHHHHcCCccc
Q 019486 138 YSLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAPEVFK-IE----EDFGRARVYN---QCGINEFVQQAIESCPVDC 209 (340)
Q Consensus 138 ~~~~~ldp~~~~~~p~~~vfvDe~~CiGCg~C~~v~P~~F~-ie----dd~G~a~vv~---q~g~~E~v~eAv~~CPv~c 209 (340)
|...++++-|.++.-.......++.||.|+.|..+||-..+ ++ .+ |..+... +.+.|--+-.|++.|||||
T Consensus 88 fEKgplS~RFRGehalrRyp~geerCIACklCeavCPaqaitieae~r~d-gsrRttrYdIDmtkCIyCG~CqEaCPvda 166 (212)
T KOG3256|consen 88 FEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEERTD-GSRRTTRYDIDMTKCIYCGFCQEACPVDA 166 (212)
T ss_pred cccCCCCcccccchhhhcCCCcchhhhhHHHHHHhCCcccceeeceecCC-ccccceeecccceeeeeecchhhhCCccc
Confidence 44455666555555455666788999999999999998754 32 22 4333221 1333333445889999999
Q ss_pred eeccc
Q 019486 210 IHRTS 214 (340)
Q Consensus 210 I~~~~ 214 (340)
|...+
T Consensus 167 ivegp 171 (212)
T KOG3256|consen 167 IVEGP 171 (212)
T ss_pred eeccC
Confidence 98653
No 81
>COG1146 Ferredoxin [Energy production and conversion]
Probab=97.05 E-value=0.00033 Score=52.61 Aligned_cols=58 Identities=29% Similarity=0.427 Sum_probs=40.0
Q ss_pred ccccccccCCCCcccCCCCc-cccccc-CCceEEccCCCCHHHHHHHHHcCCccceecccc
Q 019486 157 FVDEFSCIGCKNCNNVAPEV-FKIEED-FGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~-F~iedd-~G~a~vv~q~g~~E~v~eAv~~CPv~cI~~~~~ 215 (340)
.+|...|+||+.|..+||.. |.+..+ .+...++.. .++-....++..||++||.+...
T Consensus 4 ~Id~~~C~~c~~C~~~CP~~~~~~~~~~~~~~~~~~~-e~C~~C~~C~~~CP~~aI~~~~~ 63 (68)
T COG1146 4 VIDYDKCIGCGICVEVCPAGVFDLGEDEGGKPVVARP-EECIDCGLCELACPVGAIKVDIL 63 (68)
T ss_pred EECchhcCCCChheeccChhhEEeccccCcceeEecc-ccCccchhhhhhCCcceEEEecc
Confidence 47788899999999999966 566543 244444433 22222445999999999997654
No 82
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=96.87 E-value=0.00023 Score=50.77 Aligned_cols=49 Identities=22% Similarity=0.442 Sum_probs=29.1
Q ss_pred cccCCCCcccCCCCcccccccCCceEEccCC------CCHHHHHHHHHcCCccce
Q 019486 162 SCIGCKNCNNVAPEVFKIEEDFGRARVYNQC------GINEFVQQAIESCPVDCI 210 (340)
Q Consensus 162 ~CiGCg~C~~v~P~~F~iedd~G~a~vv~q~------g~~E~v~eAv~~CPv~cI 210 (340)
.||+|+.|..+||.........+........ ..+.....+++.||++||
T Consensus 1 kCi~Cg~C~~~CP~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~AI 55 (55)
T PF13187_consen 1 KCIGCGRCVEACPVGVIEFDEDGGKKVVDKDNERRNAEKCIGCGACVKACPTGAI 55 (55)
T ss_dssp C--TTTHHHHHSTTT-EEEETTTTCEECSECCESTTGGG--TTCHHHHHSTTT-E
T ss_pred CCCCcchHHHHCCccCeEccCccccccccccccCCCCCccccHhHHHHHcchhhC
Confidence 4999999999999876544333443333321 134445669999999998
No 83
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=96.84 E-value=0.00078 Score=61.03 Aligned_cols=58 Identities=28% Similarity=0.599 Sum_probs=41.5
Q ss_pred ccccccccccCCCCcccCCCCcccccccCCceEEccC-CCCHHHHHHHHHcCCccceecccc
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ-CGINEFVQQAIESCPVDCIHRTSA 215 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~F~iedd~G~a~vv~q-~g~~E~v~eAv~~CPv~cI~~~~~ 215 (340)
..++|...|++|+.|..+||.......+.+...+... +.. +..|+..||++||.+.+.
T Consensus 108 ~~~id~~~Ci~Cg~Cv~aCp~~ai~~~~~~~~~v~~~~C~~---Cg~Cv~vCP~~AI~~~~~ 166 (191)
T PRK05113 108 VAFIDEDNCIGCTKCIQACPVDAIVGATKAMHTVISDLCTG---CDLCVAPCPTDCIEMIPV 166 (191)
T ss_pred eeEEeCCcCCCCChhhhhCCHhhhecccCCceeecCCcCCc---hHHHHHHcCcCceEEeec
Confidence 4667999999999999999966543333344443332 444 455999999999998754
No 84
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=96.82 E-value=0.00049 Score=56.00 Aligned_cols=62 Identities=26% Similarity=0.409 Sum_probs=40.4
Q ss_pred CccccccccccCCCCcccCCCC-cccccccC----Cce-EEccCCCCHHHHHHHHHcCCccceeccccc
Q 019486 154 DHVFVDEFSCIGCKNCNNVAPE-VFKIEEDF----GRA-RVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (340)
Q Consensus 154 ~~vfvDe~~CiGCg~C~~v~P~-~F~iedd~----G~a-~vv~q~g~~E~v~eAv~~CPv~cI~~~~~~ 216 (340)
..+.++...|++|+.|..+||. .|.+.+.- +.. .++.. ..+..+..|+..||.+||.+....
T Consensus 9 ~~v~id~~~Ci~C~~Cv~aCP~~ai~~~~~~~~~~~~~~~~i~~-~~C~~C~~C~~~CP~~AI~~~~~~ 76 (103)
T PRK09626 9 TPVWVDESRCKACDICVSVCPAGVLAMRIDPHAVLGKMIKVVHP-ESCIGCRECELHCPDFAIYVADRK 76 (103)
T ss_pred CCeEECcccccCCcchhhhcChhhhccccccccccCceeeEeCC-ccCCCcCcchhhCChhhEEEeccc
Confidence 4456789999999999999997 45444321 111 12211 222334559999999999987653
No 85
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=96.72 E-value=0.0011 Score=59.60 Aligned_cols=66 Identities=23% Similarity=0.537 Sum_probs=42.3
Q ss_pred CCccccccccccCCCCcccCCCCccc-ccccCC-------ceEEccCCCCHHHHHHHHHcCCccceecccccch
Q 019486 153 KDHVFVDEFSCIGCKNCNNVAPEVFK-IEEDFG-------RARVYNQCGINEFVQQAIESCPVDCIHRTSAQQL 218 (340)
Q Consensus 153 ~~~vfvDe~~CiGCg~C~~v~P~~F~-iedd~G-------~a~vv~q~g~~E~v~eAv~~CPv~cI~~~~~~~l 218 (340)
...+.++...|++|+.|..+||.... +...+. ........+.+..+..|++.||++||.+...-++
T Consensus 54 rG~i~~~~~kCi~Cg~C~~aCP~~ai~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~aCP~~AI~~~~~~e~ 127 (183)
T TIGR00403 54 RGRIHFEFDKCIACEVCVRVCPINLPVVDWEFNKAIKKKQLKNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYEL 127 (183)
T ss_pred cceEEeCcccCcCcCChhhhCCCCcccccccccccccccccceeecCcccccCcCchhhhcCCCCeeccccccc
Confidence 34566788999999999999997632 111000 0111112344455667999999999998765444
No 86
>CHL00065 psaC photosystem I subunit VII
Probab=96.72 E-value=0.00049 Score=53.39 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=37.6
Q ss_pred ccccccccCCCCcccCCCCc-ccccccCC---ceE-EccCCCCHHHHHHHHHcCCccceecccc
Q 019486 157 FVDEFSCIGCKNCNNVAPEV-FKIEEDFG---RAR-VYNQCGINEFVQQAIESCPVDCIHRTSA 215 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~-F~iedd~G---~a~-vv~q~g~~E~v~eAv~~CPv~cI~~~~~ 215 (340)
.++...|++|+.|..+||.. +.+++..+ ... .....+.+.....++..||++||.+...
T Consensus 5 ~~~~~~Ci~Cg~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~~ 68 (81)
T CHL00065 5 VKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVY 68 (81)
T ss_pred cCccccCCChhHHHHHCCccchhheeccccccccccccCCCCcCCChhhhhhhcCccccEEEEE
Confidence 45667899999999999944 55543211 111 1111223334456999999999998654
No 87
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=96.53 E-value=0.0016 Score=55.64 Aligned_cols=64 Identities=19% Similarity=0.403 Sum_probs=43.0
Q ss_pred cccccccccCCC-----CcccCCCCcc-cccccCCceEEccCCCCHHHHHHHHHcCCccceecccccchhh
Q 019486 156 VFVDEFSCIGCK-----NCNNVAPEVF-KIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSL 220 (340)
Q Consensus 156 vfvDe~~CiGCg-----~C~~v~P~~F-~iedd~G~a~vv~q~g~~E~v~eAv~~CPv~cI~~~~~~~l~~ 220 (340)
.++++..|++|+ .|..+||... .++++...+..+.. ..+..+..|+..||.+||.+....++..
T Consensus 3 ~~v~~~~C~gC~~~~~~~Cv~~CP~~ai~~~~~~~~~~~id~-~~C~~Cg~Cv~~CP~~AI~~~~~~~~~~ 72 (132)
T TIGR02060 3 TFVYPTKCDGCKAGEKTACVYICPNDLMHLDTEIMKAYNIEP-DMCWECYSCVKACPQGAIDVRGYADFAP 72 (132)
T ss_pred CEEccccccCccCCchhcCHhhcCccceEecCCCceeeecCc-hhCccHHHHHHhCCcCceEEECcccccc
Confidence 467889999999 9999999764 34433112222322 2333456699999999999876554433
No 88
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=96.49 E-value=0.00062 Score=60.20 Aligned_cols=65 Identities=26% Similarity=0.383 Sum_probs=42.6
Q ss_pred CCccccccccccCCCCcccCCCCccc-cccc----CCceEEccCCCCHHHHHHHHHcCCccceecccccc
Q 019486 153 KDHVFVDEFSCIGCKNCNNVAPEVFK-IEED----FGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQ 217 (340)
Q Consensus 153 ~~~vfvDe~~CiGCg~C~~v~P~~F~-iedd----~G~a~vv~q~g~~E~v~eAv~~CPv~cI~~~~~~~ 217 (340)
...+++|+..|||||.|..+||...+ |... .+.+..-..+.+.+.-..+|..||..|+.+++...
T Consensus 74 ~~~v~V~~ekCiGC~~C~~aCPfGai~~~~~~~~~~~~a~KCdlC~~~e~gpaCVe~CP~~AL~lv~~~~ 143 (165)
T COG1142 74 DGAVQVDEEKCIGCKLCVVACPFGAITMVSYPVAAKAVAVKCDLCAGREVGPACVEACPTEALELVDEIV 143 (165)
T ss_pred CCceEEchhhccCcchhhhcCCcceEEEEeecCcchhhhhhcccccCccCCCceeeeCCHHHhhcccHHH
Confidence 34678999999999999999996643 3332 01111111122222225589999999999887655
No 89
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=96.48 E-value=0.0017 Score=55.49 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=38.3
Q ss_pred ccccccccccCCCCcccCCCCcccccccCCceEEccCCCCHHHHHHHHHcCCccceecc
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT 213 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~F~iedd~G~a~vv~q~g~~E~v~eAv~~CPv~cI~~~ 213 (340)
...++...|++|+.|..+||.......+ +...++.. +.+..+..|++.||.+||.+.
T Consensus 53 ~p~~d~~~Ci~C~~C~~~CP~~ai~~~~-~~~~~i~~-~~C~~Cg~Cv~vCP~~a~~l~ 109 (133)
T PRK09625 53 KPVHNNEICINCFNCWVYCPDAAILSRD-KKLKGVDY-SHCKGCGVCVEVCPTNPKSLL 109 (133)
T ss_pred eEEEehhHCcChhhHHHhCCHhheEecC-CceEEeCc-CcCcChhHHHHHCCcCceEEE
Confidence 4456889999999999999977654333 32222322 223334459999999997654
No 90
>PLN00071 photosystem I subunit VII; Provisional
Probab=96.46 E-value=0.00094 Score=51.70 Aligned_cols=58 Identities=19% Similarity=0.331 Sum_probs=37.6
Q ss_pred ccccccccCCCCcccCCCCc-ccccccCC-ceE-E--ccCCCCHHHHHHHHHcCCccceeccc
Q 019486 157 FVDEFSCIGCKNCNNVAPEV-FKIEEDFG-RAR-V--YNQCGINEFVQQAIESCPVDCIHRTS 214 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~-F~iedd~G-~a~-v--v~q~g~~E~v~eAv~~CPv~cI~~~~ 214 (340)
+++...|++|+.|..+||.. +.+.+..+ ... . ....+.+..+..+++.||++||.+..
T Consensus 5 ~~~~~~C~~C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~ 67 (81)
T PLN00071 5 VKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRV 67 (81)
T ss_pred eEcCCcCcChhHHHHHCCccceeeecccccccccccCcCCCCcCcChhhHHhhcCCccceEee
Confidence 45667899999999999954 55543212 111 1 11223344556799999999999753
No 91
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=96.43 E-value=0.002 Score=52.65 Aligned_cols=58 Identities=26% Similarity=0.417 Sum_probs=39.0
Q ss_pred ccccccccccCCCCcccCCCCcc-cccccCCceEEccCCCCHHHHHHHHHcCCccceecccc
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEVF-KIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~F-~iedd~G~a~vv~q~g~~E~v~eAv~~CPv~cI~~~~~ 215 (340)
...++...|++|+.|..+||... .+.++ +.. ++.. +.+..+..|+..||++||.+...
T Consensus 45 ~p~i~~~~Ci~C~~C~~~CP~~ai~~~~~-~~~-~id~-~~C~~Cg~Cv~~CP~~AI~~~~~ 103 (105)
T PRK09623 45 MPVVDESKCVKCYICWKFCPEPAIYIKED-GYV-AIDY-DYCKGCGICANECPTKAITMVKE 103 (105)
T ss_pred eEEECcccCccccchhhhCCHhheEecCC-CcE-EeCc-hhCcCcchhhhhcCcCcEEeccc
Confidence 34578899999999999999763 34333 322 2221 22223445999999999998654
No 92
>PRK02651 photosystem I subunit VII; Provisional
Probab=96.39 E-value=0.0014 Score=50.58 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=35.5
Q ss_pred cccccccCCCCcccCCCCc-ccccccCC-ceEEc---cCCCCHHHHHHHHHcCCccceeccc
Q 019486 158 VDEFSCIGCKNCNNVAPEV-FKIEEDFG-RARVY---NQCGINEFVQQAIESCPVDCIHRTS 214 (340)
Q Consensus 158 vDe~~CiGCg~C~~v~P~~-F~iedd~G-~a~vv---~q~g~~E~v~eAv~~CPv~cI~~~~ 214 (340)
.....|++|+.|..+||.. +.+++..+ ....+ ...+.+..+..+++.||++||.+..
T Consensus 6 ~~~~~Ci~C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 67 (81)
T PRK02651 6 KIYDTCIGCTQCVRACPLDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRV 67 (81)
T ss_pred cccccCCCcchHHHHCCccceecccccccccCcccccCCCCcCCChhhhhhhcCCCceEEEE
Confidence 3457899999999999954 44432111 11111 1123333455699999999999753
No 93
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=96.37 E-value=0.0016 Score=51.24 Aligned_cols=61 Identities=23% Similarity=0.399 Sum_probs=38.5
Q ss_pred CCccccccccccCCCCcccCCCCcc-cccc--cCC-------------ce-EEccCCCCHHHHHHHHHcCCccceecc
Q 019486 153 KDHVFVDEFSCIGCKNCNNVAPEVF-KIEE--DFG-------------RA-RVYNQCGINEFVQQAIESCPVDCIHRT 213 (340)
Q Consensus 153 ~~~vfvDe~~CiGCg~C~~v~P~~F-~ied--d~G-------------~a-~vv~q~g~~E~v~eAv~~CPv~cI~~~ 213 (340)
...+.++...|++|+.|..+||... .+.. ..+ .. ........+.....++..||++||.++
T Consensus 13 ~~~~~i~~~~Ci~C~~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~C~~Cg~C~~~CP~~AI~~~ 90 (91)
T TIGR02936 13 QFVTSIDQEKCIGCGRCYKVCGRDVLTLKGINEEGELVASDDDDDEIERKVMVVANPGNCIGCGACARVCPKKCQTHA 90 (91)
T ss_pred ceeEEECHhHCCCcchHHHHcChhhceeeccccccccccccccccccccceeeecCCccCcChhhhhhhCCHhHEecC
Confidence 4456789999999999999999653 2321 001 10 111122333345569999999999865
No 94
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=96.34 E-value=0.0022 Score=56.60 Aligned_cols=57 Identities=26% Similarity=0.494 Sum_probs=39.6
Q ss_pred ccccccccccCCCCcccCCCCcccccccCCceEEccCCCCHHHHHHHHHcCCccceecc
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT 213 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~F~iedd~G~a~vv~q~g~~E~v~eAv~~CPv~cI~~~ 213 (340)
...+|...|++|+.|..+||.......+.+...+.. ..+..+..++..||++||.++
T Consensus 107 ~~~id~~~Ci~Cg~C~~aCp~~ai~~~~~~~~~i~~--~~C~~Cg~Cv~~CP~~AI~~~ 163 (165)
T TIGR01944 107 VALIDEDNCIGCTKCIQACPVDAIVGAAKAMHTVIA--DECTGCDLCVEPCPTDCIEMI 163 (165)
T ss_pred eEEEECCcCCChhHHHHhCCccceEecCCCceEeec--ccccChhHHHHhcCcCceEee
Confidence 456789999999999999997654433334333322 222334569999999999975
No 95
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=96.12 E-value=0.0019 Score=61.70 Aligned_cols=61 Identities=23% Similarity=0.471 Sum_probs=39.9
Q ss_pred CCccccccccccCCCCcccCCCCcccc---cccCCceEEccCCCCHHHHHHHHHcCCccceeccc
Q 019486 153 KDHVFVDEFSCIGCKNCNNVAPEVFKI---EEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (340)
Q Consensus 153 ~~~vfvDe~~CiGCg~C~~v~P~~F~i---edd~G~a~vv~q~g~~E~v~eAv~~CPv~cI~~~~ 214 (340)
...+.+|...|++|+.|..+||..... ..+ +...+......|..+..|+..||++||.+..
T Consensus 40 ~~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~~~~-~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~g 103 (295)
T TIGR02494 40 SPELLFKENRCLGCGKCVEVCPAGTARLSELAD-GRNRIIIRREKCTHCGKCTEACPSGALSIVG 103 (295)
T ss_pred CceEEEccccCCCCchhhhhCcccccccccccC-CCcceeechhhcCchhHhhccCcHhHHhhhc
Confidence 345678999999999999999976431 111 1111221222333455699999999999853
No 96
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=96.11 E-value=0.0029 Score=48.44 Aligned_cols=57 Identities=28% Similarity=0.403 Sum_probs=37.5
Q ss_pred cccccccccCCCCcccCCCCcccccccCCceEEccCCCCHHHHHHHHHcCCccceeccc
Q 019486 156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~~F~iedd~G~a~vv~q~g~~E~v~eAv~~CPv~cI~~~~ 214 (340)
..++...|++|+.|..+||.......+.+...+ .. +.+.....++..||.+||.+..
T Consensus 20 ~~i~~~~C~~C~~C~~~Cp~~ai~~~~~~~~~i-~~-~~C~~C~~C~~~CP~~Ai~~~~ 76 (78)
T TIGR02179 20 PVVDKEKCIKCKNCWLYCPEGAIQEDEGGFVGI-DY-DYCKGCGICANVCPVKAIEMVR 76 (78)
T ss_pred EEEcCCcCcChhHHHhhcCccceEecCCCcEEe-cC-ccCcCccchhhhCCccccEecc
Confidence 356788999999999999976433222232222 21 2222345599999999998754
No 97
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=96.07 E-value=0.0038 Score=62.87 Aligned_cols=55 Identities=20% Similarity=0.439 Sum_probs=38.0
Q ss_pred ccccccccccCCCCcccCCCCcccccccCCceEEccCCCCHHHHHHHHHcCCccceec
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR 212 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~F~iedd~G~a~vv~q~g~~E~v~eAv~~CPv~cI~~ 212 (340)
.+.+|...|++|+.|..+||......++.+ .++. ...|..+..|+..||.+||..
T Consensus 4 ~~~id~~~Ci~C~~C~~~CP~~ai~~~~~~--~~i~-~~~C~~C~~C~~~CP~~AI~~ 58 (411)
T TIGR03224 4 QHLIDPEICIRCNTCEETCPIDAITHDDRN--YVVK-ADVCNGCMACVSPCPTGAIDN 58 (411)
T ss_pred eeeeCcccCcCccchhhhCCcccEeccCCc--eEeC-cccCcCHHHHHhhcCccccee
Confidence 345788899999999999997654333322 2222 223344566999999999984
No 98
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=96.02 E-value=0.0039 Score=58.87 Aligned_cols=54 Identities=26% Similarity=0.449 Sum_probs=36.4
Q ss_pred ccccccCCCCcccCCCCccccccc-C-CceEEccCCCCHHHHHHHHHcCCccceecc
Q 019486 159 DEFSCIGCKNCNNVAPEVFKIEED-F-GRARVYNQCGINEFVQQAIESCPVDCIHRT 213 (340)
Q Consensus 159 De~~CiGCg~C~~v~P~~F~iedd-~-G~a~vv~q~g~~E~v~eAv~~CPv~cI~~~ 213 (340)
|++.|++|+.|..+||..-.++.. . +....+ ..+++..+.+|++.||.+||.+.
T Consensus 199 ~~~~C~~C~~C~~vCP~~~vl~~~~~~~~~~~i-~~~~C~~Cg~Cv~~CP~~Ai~f~ 254 (255)
T TIGR02163 199 DREKCTNCMDCFNVCPEPQVLRMPLKKGGSTLV-LSGDCTLCGRCIDVCHEDVLGFT 254 (255)
T ss_pred ccccCeEcCCccCcCCCCceeeccccCCCceEe-ccccccchhHHHHhCCccccccc
Confidence 488999999999999976433211 1 111122 23445566779999999999864
No 99
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=96.00 E-value=0.0032 Score=63.44 Aligned_cols=59 Identities=24% Similarity=0.430 Sum_probs=38.4
Q ss_pred ccccccccccCCCCcccCCCCc----ccccccCCce-EEccCCCCHHHHHHHHHcCCc-cceecccc
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEV----FKIEEDFGRA-RVYNQCGINEFVQQAIESCPV-DCIHRTSA 215 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~----F~iedd~G~a-~vv~q~g~~E~v~eAv~~CPv-~cI~~~~~ 215 (340)
...+|+..|++|+.|..+||.. +.++++ |.. ..+.. ..|..+..|+..||+ +||++...
T Consensus 336 ~~~~~~~~C~~C~~C~~~Cp~~~~~ai~~~~~-~~~~~~i~~-~~C~~Cg~C~~~CP~~~Ai~~~~~ 400 (420)
T PRK08318 336 YARIDQDKCIGCGRCYIACEDTSHQAIEWDED-GTRTPEVIE-EECVGCNLCAHVCPVEGCITMGEV 400 (420)
T ss_pred EEEECHHHCCCCCcccccCCCcchhheeeccC-CCceEEech-hhCcccchHHhhCCCCCCEEEecc
Confidence 4457889999999999999963 334332 221 22221 222334449999999 99997654
No 100
>PRK13984 putative oxidoreductase; Provisional
Probab=96.00 E-value=0.0029 Score=66.47 Aligned_cols=59 Identities=22% Similarity=0.525 Sum_probs=37.4
Q ss_pred cccccccccCCCCcccCCCCc-------ccccccCCce--EEccCCCCHHHHHHHHHcCCccceeccc
Q 019486 156 VFVDEFSCIGCKNCNNVAPEV-------FKIEEDFGRA--RVYNQCGINEFVQQAIESCPVDCIHRTS 214 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~~-------F~iedd~G~a--~vv~q~g~~E~v~eAv~~CPv~cI~~~~ 214 (340)
+.+|...|++|+.|..+||.. |..+..+|.. ........|..+..|++.||++||++..
T Consensus 40 ~~~d~~~Ci~C~~C~~~Cp~~ai~~~~~~~~~~~~g~~~~~~~i~~~~c~~c~~c~~~Cp~~Ai~~~~ 107 (604)
T PRK13984 40 HINDWEKCIGCGTCSKICPTDAITMVEVPDLPQEYGKKPQRPVIDYGRCSFCALCVDICTTGSLKMTR 107 (604)
T ss_pred cccChhhCcCccchhhhCCccceEeeccccccccccccccccccCcccCcCcchHHhhCCcCcEEecc
Confidence 456888999999999999954 2222222321 1111112233455699999999999865
No 101
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=95.97 E-value=0.021 Score=53.20 Aligned_cols=62 Identities=19% Similarity=0.430 Sum_probs=40.2
Q ss_pred CccccccccccCCCCcccCCCCc---cccc--ccCCceEEccC-------CCCHHHHHHHHHcCCccceecccc
Q 019486 154 DHVFVDEFSCIGCKNCNNVAPEV---FKIE--EDFGRARVYNQ-------CGINEFVQQAIESCPVDCIHRTSA 215 (340)
Q Consensus 154 ~~vfvDe~~CiGCg~C~~v~P~~---F~ie--dd~G~a~vv~q-------~g~~E~v~eAv~~CPv~cI~~~~~ 215 (340)
..+.+|...|++|+.|..+|+.. +.+. .......++.. ...+..+..|++.||++||.....
T Consensus 139 ~~i~~d~~kCi~Cg~Cv~aC~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~C~~Cg~Cv~vCP~gAL~~~~~ 212 (234)
T PRK07569 139 PRFGIDHNRCVLCTRCVRVCDEIEGAHTWDVAGRGAKSRVITDLNQPWGTSETCTSCGKCVQACPTGAIFRKGS 212 (234)
T ss_pred CcEEeehhhCcCccHHHHHHHHhcCCceeeecccCCcceEeecCCccccccccccchHHHHHhCCCCcEEecCC
Confidence 34567899999999999999842 2222 22122333311 123445677999999999997655
No 102
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=95.97 E-value=0.0027 Score=49.08 Aligned_cols=59 Identities=17% Similarity=0.281 Sum_probs=37.9
Q ss_pred cccccccccCCCCcccCCCCc-ccccccCCc--eEE-c-cCCCCHHHHHHHHHcCCccceeccc
Q 019486 156 VFVDEFSCIGCKNCNNVAPEV-FKIEEDFGR--ARV-Y-NQCGINEFVQQAIESCPVDCIHRTS 214 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~~-F~iedd~G~--a~v-v-~q~g~~E~v~eAv~~CPv~cI~~~~ 214 (340)
++.+...|++|+.|..+||.. +.+++..+. ..+ . ...+.+.....+++.||++||.+..
T Consensus 3 ~~~~~~~Ci~C~~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 66 (80)
T TIGR03048 3 SVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDCVGCKRCESACPTDFLSVRV 66 (80)
T ss_pred ceecCCcCcCcchHHHHCCccceeeecccccccccccCcCCCCcCcChhHHHHhcCcccCEEEE
Confidence 455677899999999999954 555432121 111 1 1123344456799999999999753
No 103
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=95.95 E-value=0.0033 Score=51.51 Aligned_cols=55 Identities=20% Similarity=0.402 Sum_probs=37.2
Q ss_pred ccccccccCCCCcccCCCCcc-cccccCCceEEccCCCCHHHHHHHHHcCCccceeccc
Q 019486 157 FVDEFSCIGCKNCNNVAPEVF-KIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~F-~iedd~G~a~vv~q~g~~E~v~eAv~~CPv~cI~~~~ 214 (340)
.++...|++|+.|..+||... .++++ +.. ++.. +.+..+..|++.||.+||.+..
T Consensus 47 ~~d~~~Ci~C~~C~~~CP~~ai~~~~~-~~~-~id~-~~C~~Cg~Cv~~CP~~AI~~~~ 102 (105)
T PRK09624 47 EFNRDKCVRCYLCYIYCPEPAIYLDEE-GYP-VFDY-DYCKGCGICANECPTKAIEMVR 102 (105)
T ss_pred EEChhHCcChhhHHhhCCHhhEEecCC-CcE-EECc-hhCCCcCchhhhcCcCcEEEec
Confidence 468889999999999999764 33333 322 2322 2222344599999999998753
No 104
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=95.94 E-value=0.0024 Score=57.35 Aligned_cols=66 Identities=21% Similarity=0.312 Sum_probs=42.7
Q ss_pred CCccccccccccCCCCcccCCCCccc-cccc--CCceEEccCCCCHHHHHHHHHcCCccceecccccch
Q 019486 153 KDHVFVDEFSCIGCKNCNNVAPEVFK-IEED--FGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQL 218 (340)
Q Consensus 153 ~~~vfvDe~~CiGCg~C~~v~P~~F~-iedd--~G~a~vv~q~g~~E~v~eAv~~CPv~cI~~~~~~~l 218 (340)
+..+.+|...|++|+.|..+||.... ++.+ .|........+.+..+..|++.||++||.+...-++
T Consensus 30 rG~~~~d~~~Ci~Cg~Cv~aCP~~Ai~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CPt~AI~~~~~~~~ 98 (181)
T PRK08222 30 RGKPDLMPSQCIACGACTCACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFEL 98 (181)
T ss_pred cCceEeChhhCcchhHHHHhCCccceEcccccccCccceeeccCcCcCCCCcccccCcCeEEeccceee
Confidence 34566789999999999999997643 3222 121111111233334456999999999998765443
No 105
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.0055 Score=54.58 Aligned_cols=54 Identities=30% Similarity=0.395 Sum_probs=45.5
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC-------hHHHHHHHHHHHHHHHh
Q 019486 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-------PETTNFCMFINEVYAVL 123 (340)
Q Consensus 70 ~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~-------~~~~~~f~~i~~Ay~vL 123 (340)
.+.|.+||+.......+|+++|+++....|||+.... ....+.++.|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999974332 13567788888888753
No 106
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=95.90 E-value=0.0056 Score=54.19 Aligned_cols=64 Identities=22% Similarity=0.517 Sum_probs=40.7
Q ss_pred ccccccccccCCCCcccCCCCccc-ccccCC----ce---EEccCCCCHHHHHHHHHcCCccceecccccch
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEVFK-IEEDFG----RA---RVYNQCGINEFVQQAIESCPVDCIHRTSAQQL 218 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~F~-iedd~G----~a---~vv~q~g~~E~v~eAv~~CPv~cI~~~~~~~l 218 (340)
.+..+...|++|+.|..+||.... ++.++. .. ......+.+..+..|++.||++||.+....++
T Consensus 53 ~i~~~~~~Ci~Cg~C~~aCP~~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~C~~~CP~~AI~~~~~~~~ 124 (167)
T CHL00014 53 RIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYEL 124 (167)
T ss_pred eEEeccccCCCcCcHHHhCCCCCccccccccccccccccccccCCCCcCcCccchHhhcCcCceecCCcccc
Confidence 455678899999999999997632 211110 01 11111244556667999999999998655433
No 107
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=95.89 E-value=0.0045 Score=54.49 Aligned_cols=54 Identities=35% Similarity=0.565 Sum_probs=34.0
Q ss_pred cccCCCCcccCCCCcc-cccccC---Cce---EEccCCCCHHHHHHHHHcCCccceecccc
Q 019486 162 SCIGCKNCNNVAPEVF-KIEEDF---GRA---RVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (340)
Q Consensus 162 ~CiGCg~C~~v~P~~F-~iedd~---G~a---~vv~q~g~~E~v~eAv~~CPv~cI~~~~~ 215 (340)
.|++|+.|..+||... .+.... |.. ......+.+..+..|+..||++||.+...
T Consensus 59 ~Ci~C~~C~~~CP~~ai~~~~~~~~~g~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 119 (164)
T PRK05888 59 RCIACKLCAAICPADAITIEAAEREDGRRRTTRYDINFGRCIFCGFCEEACPTDAIVETPD 119 (164)
T ss_pred cCCcccChHHHcCccccccccccCCCCcccceeeecCCCcCcccCcchhhcCcCcceecCc
Confidence 9999999999999663 232211 211 11112233334556999999999998654
No 108
>PRK09898 hypothetical protein; Provisional
Probab=95.89 E-value=0.0052 Score=56.20 Aligned_cols=58 Identities=17% Similarity=0.456 Sum_probs=40.9
Q ss_pred ccccccccccCCCCcccCCCCccc-ccccCCceEEccCCCCHHHHHHHHHcCCccceecccccch
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEVFK-IEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQL 218 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~F~-iedd~G~a~vv~q~g~~E~v~eAv~~CPv~cI~~~~~~~l 218 (340)
.+.+|...|++|+.|..+||.... ++...+ . .+.+..+..+++.||.+||.+++.+++
T Consensus 148 ~v~vd~~~CigC~~C~~aCP~~ai~~~~~~~---~---~~kC~~Cg~Cv~~CP~~Ai~~~~~~~~ 206 (208)
T PRK09898 148 CITVDHKRCIGCSACTTACPWMMATVNTESK---K---SSKCVLCGECANACPTGALKIIEWKDI 206 (208)
T ss_pred eEEeccccCCCcCcccccCCCCCCEecCCCC---c---CCcCcChHHHHHhCCcccEEEecHHHc
Confidence 356788999999999999997643 332211 1 223344557999999999999876654
No 109
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=95.88 E-value=0.0048 Score=58.72 Aligned_cols=56 Identities=23% Similarity=0.358 Sum_probs=37.2
Q ss_pred cccccccCCCCcccCCCCcccccc-cCCceE-EccCCCCHHHHHHHHHcCCccceecc
Q 019486 158 VDEFSCIGCKNCNNVAPEVFKIEE-DFGRAR-VYNQCGINEFVQQAIESCPVDCIHRT 213 (340)
Q Consensus 158 vDe~~CiGCg~C~~v~P~~F~ied-d~G~a~-vv~q~g~~E~v~eAv~~CPv~cI~~~ 213 (340)
.|...|++|+.|..+||..-.+.. ..+... .....++|..+.+|++.||++||.+.
T Consensus 205 ~d~~~C~~C~~C~~~CP~~~i~~~~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~ 262 (271)
T PRK09477 205 HDRQKCTRCMDCFHVCPEPQVLRPPLKGKQSPSQVTSGDCITCGRCIDVCSEDVFNFT 262 (271)
T ss_pred CCcccCcccCCcCCcCCCcceecccccCCCccceeCcccCcChhHHHhhcCccceeec
Confidence 688999999999999997643331 001111 00112345556679999999999975
No 110
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=95.83 E-value=0.0038 Score=55.84 Aligned_cols=67 Identities=25% Similarity=0.446 Sum_probs=43.0
Q ss_pred CccccccccccCCCCcccCCCCcc-cccccC--CceEEccCCCCHHHHHHHHHcCCccceecccccchhh
Q 019486 154 DHVFVDEFSCIGCKNCNNVAPEVF-KIEEDF--GRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSL 220 (340)
Q Consensus 154 ~~vfvDe~~CiGCg~C~~v~P~~F-~iedd~--G~a~vv~q~g~~E~v~eAv~~CPv~cI~~~~~~~l~~ 220 (340)
..+.+|...|++|+.|..+||... .++.+. |........+.+..+..+++.||++||.+...-+++.
T Consensus 31 g~p~~d~~~C~~C~~Cv~~CP~~ai~~~~~~~~~~~~~~i~~~~C~~Cg~C~~vCP~~AI~~~~~~~~~~ 100 (180)
T PRK12387 31 GKPEYNPQQCIGCAACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQEFELAV 100 (180)
T ss_pred CceEEChhhCcChhHHHHhcCccCeEeeccccCCcccceeccccCcCccchhhhcCcCceEccCccchhh
Confidence 456678999999999999999763 333321 1111111123333445699999999999876544443
No 111
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=95.82 E-value=0.0024 Score=51.80 Aligned_cols=61 Identities=28% Similarity=0.499 Sum_probs=34.4
Q ss_pred CccccccccccCCCCcccCCCCccc-ccccCCceEEccCCCCH---HHHHHHHHcCCccceeccc
Q 019486 154 DHVFVDEFSCIGCKNCNNVAPEVFK-IEEDFGRARVYNQCGIN---EFVQQAIESCPVDCIHRTS 214 (340)
Q Consensus 154 ~~vfvDe~~CiGCg~C~~v~P~~F~-iedd~G~a~vv~q~g~~---E~v~eAv~~CPv~cI~~~~ 214 (340)
..|.+|+..|+||+.|...||-..+ ++.+.+.+..-.-+.+. ...-.+|..||++||.+.+
T Consensus 33 G~V~id~~~CigC~~C~~aCP~~ai~~~~~~~~~~KCdlC~~r~~~G~~PaCv~~Cp~~Al~~g~ 97 (98)
T PF13247_consen 33 GIVVIDEDKCIGCGYCVEACPYGAIRFDPDTGKARKCDLCIDRIEEGEEPACVEACPTGALTFGD 97 (98)
T ss_dssp S-EEE-TTTCCTHHHHHHH-TTS-EEEETTTTCEEE--TTHHHHTTT-S-HHHHH-TTS-EEEEE
T ss_pred CeEEechhhccCchhhhhhhccCcceeecccccCCcCceehhhhhcCCCChhHHhccccceEEec
Confidence 3567899999999999999997754 45444433322221000 0123489999999999754
No 112
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=95.78 E-value=0.0037 Score=52.00 Aligned_cols=57 Identities=28% Similarity=0.463 Sum_probs=35.6
Q ss_pred ccccCCCCcccCCCCc-ccccccC---Cce---EEccCCCCHHHHHHHHHcCCccceecccccc
Q 019486 161 FSCIGCKNCNNVAPEV-FKIEEDF---GRA---RVYNQCGINEFVQQAIESCPVDCIHRTSAQQ 217 (340)
Q Consensus 161 ~~CiGCg~C~~v~P~~-F~iedd~---G~a---~vv~q~g~~E~v~eAv~~CPv~cI~~~~~~~ 217 (340)
..|++|+.|..+||.. +.+.... +.. ......+.+..+..|+..||.+||.+...-+
T Consensus 43 ~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~al~~~~~~~ 106 (122)
T TIGR01971 43 EKCIGCTLCAAVCPADAIRVVPAEGEDGKRRLKFYQINFGRCIFCGLCEEACPTDAIVLTPEFE 106 (122)
T ss_pred CcCcCcchhhhhcCHhHeeeeeeccCCCceecccceECcccCCCCCchhhhCCCccccccceee
Confidence 8899999999999943 4433211 111 1111123333455699999999999876543
No 113
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=95.74 E-value=0.0055 Score=48.24 Aligned_cols=58 Identities=24% Similarity=0.402 Sum_probs=37.2
Q ss_pred ccccccccCCCCcccCCCCcccc-cccC--CceEEccCCCCHHHHHHHHHcCCccceecccc
Q 019486 157 FVDEFSCIGCKNCNNVAPEVFKI-EEDF--GRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~F~i-edd~--G~a~vv~q~g~~E~v~eAv~~CPv~cI~~~~~ 215 (340)
.++...|++||.|..+||..... ..+. .....+. ...+..+..++..||++||.+...
T Consensus 25 ~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~-~~~C~~C~~C~~~Cp~~a~~~~~~ 85 (99)
T COG1145 25 VIDAEKCIGCGLCVKVCPTGAIELIEEGLLLPEVVID-PDLCVLCGACLKVCPVDALSIAEE 85 (99)
T ss_pred EeCccccCCCCCchhhCCHHHhhcccccCccceEEEc-cccCccccchHhhCCcCCeehhhc
Confidence 56777899999999999988432 2221 0112222 223334446899999999887544
No 114
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.0074 Score=53.76 Aligned_cols=63 Identities=29% Similarity=0.430 Sum_probs=49.5
Q ss_pred CchhhcCCCCCC--CHHHHHHHHHHHHHhcCCCCCCCChHH-----HHHHHHHHHHHHHhcChhhhhhhc
Q 019486 71 DYYAVLGLLPDA--TPEQIKKAYYNCMKACHPDLSGDDPET-----TNFCMFINEVYAVLSDPVQRMVYD 133 (340)
Q Consensus 71 d~Y~vLgv~~~a--s~~eIk~AYr~la~~~HPD~~~~~~~~-----~~~f~~i~~Ay~vLsdp~~R~~YD 133 (340)
+|+.++|+...+ ..+.++..|+.+.+.+|||+....+.. .+.+..+|.||.+|.||-.|..|=
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~ 71 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYL 71 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 455666666543 455689999999999999998775432 347789999999999999999984
No 115
>PRK08764 ferredoxin; Provisional
Probab=95.53 E-value=0.01 Score=50.77 Aligned_cols=54 Identities=26% Similarity=0.528 Sum_probs=34.9
Q ss_pred ccccccccCCCCcccCCCCcccccccCCceEEccCCCCHHHHHHHHHcCCccceec
Q 019486 157 FVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR 212 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~F~iedd~G~a~vv~q~g~~E~v~eAv~~CPv~cI~~ 212 (340)
++++..|++|+.|..+||...+..+..+...+... .+.....++..||++||.+
T Consensus 81 ~~~~~~Ci~C~~Cv~aCp~~ai~~~~~~~~~v~~~--~C~~Cg~Cv~~CP~~Ai~~ 134 (135)
T PRK08764 81 WIVEADCIGCTKCIQACPVDAIVGGAKHMHTVIAP--LCTGCELCVPACPVDCIEL 134 (135)
T ss_pred EECcccCcCcchHHHhCChhhcCccCCCceeecCC--cCcCccchhhhcCccceEe
Confidence 34567899999999999965432222233332222 2223445999999999975
No 116
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=95.48 E-value=0.0053 Score=59.45 Aligned_cols=60 Identities=23% Similarity=0.413 Sum_probs=38.1
Q ss_pred ccccccccccCCCCcccCCCCcccccc---cC---C---ceEEcc-CCCCHHHHHHHHHcCCccceeccc
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEVFKIEE---DF---G---RARVYN-QCGINEFVQQAIESCPVDCIHRTS 214 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~F~ied---d~---G---~a~vv~-q~g~~E~v~eAv~~CPv~cI~~~~ 214 (340)
...+|...|++|+.|..+||....... .. + ...++. ....|..+..|++.||++||.++.
T Consensus 241 ~p~id~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~d~~~C~gCg~C~~~CP~~AI~~~~ 310 (312)
T PRK14028 241 KPVIDHSKCIMCRKCWLYCPDDAIIEAWREAEGPRGRKFRMKMIDFDYQYCKGCGVCAEVCPTGAIQMVR 310 (312)
T ss_pred ceEECcccCcCcccccccCChhhhhcccccccCcccccccceeecCCcccCcCcCchhhhCCHhheEecc
Confidence 345688999999999999997743210 00 1 111111 122344456699999999999753
No 117
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=95.41 E-value=0.0052 Score=56.14 Aligned_cols=64 Identities=25% Similarity=0.461 Sum_probs=44.3
Q ss_pred ccccccccccCCCCcccCCCCcc-cccccCCceEEccCCCCH-HHH-----HHHHHcCCccceecccccchhhh
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEVF-KIEEDFGRARVYNQCGIN-EFV-----QQAIESCPVDCIHRTSAQQLSLL 221 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~F-~iedd~G~a~vv~q~g~~-E~v-----~eAv~~CPv~cI~~~~~~~l~~L 221 (340)
.|.+|.+.||||+-|...||-.. .++.+.+. +..+.-+ +.+ =.+|++||++|+.+.+.+++...
T Consensus 94 iV~vd~d~CIGC~yCi~ACPyga~~~~~~~~~---~~KCt~C~~ri~~g~~PaCV~~CP~~A~~fG~~~d~~~~ 164 (203)
T COG0437 94 IVLVDKDLCIGCGYCIAACPYGAPQFNPDKGV---VDKCTFCVDRVAVGKLPACVEACPTGALIFGDIDDPKSK 164 (203)
T ss_pred EEEecCCcccCchHHHhhCCCCCceeCcccCc---ccccCcchhhHhcCCCCcccccCCcccccccchhhcchh
Confidence 46789999999999999999764 34554342 3333222 122 24899999999998877666543
No 118
>PRK06273 ferredoxin; Provisional
Probab=95.36 E-value=0.0062 Score=53.97 Aligned_cols=55 Identities=25% Similarity=0.310 Sum_probs=34.4
Q ss_pred ccccccccCCCCcccCCCCcccc-cccC------Cc----eEEccCCCCHHHHHHHHHcCCccceec
Q 019486 157 FVDEFSCIGCKNCNNVAPEVFKI-EEDF------GR----ARVYNQCGINEFVQQAIESCPVDCIHR 212 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~F~i-edd~------G~----a~vv~q~g~~E~v~eAv~~CPv~cI~~ 212 (340)
.+++..|++|+.|..+||..... +... +. ..++. ...+..+..|++.||++||..
T Consensus 45 ~id~~~CigCg~C~~aCP~~AI~~~~~ep~~~~~~~~~~~~~~Id-~~kCi~Cg~C~~aCP~~AI~~ 110 (165)
T PRK06273 45 KVFEELCIGCGGCANVCPTKAIEMIPVEPVKITEGYVKTKIPKID-YEKCVYCLYCHDFCPVFALFN 110 (165)
T ss_pred eECchhCcChhHHHHhcCccceeeecccccchhcccccccceecc-cccCcCCCCcchhCCHhheec
Confidence 46888999999999999976432 2110 00 01111 122233446999999999854
No 119
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=95.31 E-value=0.0049 Score=49.97 Aligned_cols=58 Identities=17% Similarity=0.339 Sum_probs=36.8
Q ss_pred cccccccCCCCcccCCCCcccccccCCceEEccCCCCHHHHHHHHHcCCccceecccc
Q 019486 158 VDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (340)
Q Consensus 158 vDe~~CiGCg~C~~v~P~~F~iedd~G~a~vv~q~g~~E~v~eAv~~CPv~cI~~~~~ 215 (340)
++...|++|+.|..+||.....-+..|...+....+.+.....++..||+++|+-.+.
T Consensus 31 ~~~~~C~~C~~C~~~CP~~~i~~~~~g~~~~~i~~~~C~~Cg~C~~~CP~~Ai~~~~~ 88 (101)
T TIGR00402 31 LFSAVCTRCGECASACENNILQLGQQGQPTVEFDNAECDFCGKCAEACPTNAFHPRFP 88 (101)
T ss_pred cCcCcCcChhHHHHHcCcccceeccCCceeeEecCccCcCccChhhHCCccccCcCCC
Confidence 4556899999999999976433222242222222233344556999999999985433
No 120
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=95.29 E-value=0.0058 Score=58.67 Aligned_cols=63 Identities=21% Similarity=0.336 Sum_probs=35.5
Q ss_pred ccccccccccCCCCcccCCCCc-ccccccCCceEEccCCCCHH------HHHHHHHcCCccceecccccchhh
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINE------FVQQAIESCPVDCIHRTSAQQLSL 220 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~-F~iedd~G~a~vv~q~g~~E------~v~eAv~~CPv~cI~~~~~~~l~~ 220 (340)
.+.+|...|+||+.|..+||.. ..+++..+. ...+..+. ..-.|+..||++||.+.+.+++..
T Consensus 118 ~V~id~dkCigC~~Cv~aCP~~a~~~~~~~~~---~~KC~~C~dr~~~G~~PaCv~aCP~gAi~fg~~~~~~~ 187 (283)
T TIGR01582 118 IVDFDHSKCIGCGYCIVGCPFNIPRYDKVDNR---PYKCTLCIDRVSVGQEPACVKTCPTNAISFGFKEDMKE 187 (283)
T ss_pred cEEEeHHHCCcchHHHhhCCCCCcEEcCCCCC---hhhhcccccccccCCCChHhCcccHhhEEECCHHHHHH
Confidence 3456778888888888888754 334332121 11122111 012477888888888776554433
No 121
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=95.16 E-value=0.0049 Score=43.44 Aligned_cols=50 Identities=26% Similarity=0.418 Sum_probs=17.2
Q ss_pred cccccccccCCCCcccCCCC-cccccccCCceEEccCCCCHHHHHHHHHcCC
Q 019486 156 VFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCP 206 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~-~F~iedd~G~a~vv~q~g~~E~v~eAv~~CP 206 (340)
+++|...|++|+.|..+||. ........+....+ ....+.....++..||
T Consensus 2 i~id~~~C~~C~~C~~~CP~~~~~~~~~~~~~~~~-~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 2 IVIDEDKCIGCGRCVKVCPADNAIAIDDGEKKVEI-DPERCIGCGACVEVCP 52 (52)
T ss_dssp ----TT------TTGGG-TT-----EEE-SSSEEE--TTT--TTSHHHHH-T
T ss_pred CccCcccCcCCcChHHHccchhHHHhhccCCCeEe-CcccccccChhhhhCc
Confidence 56789999999999999998 22111111222222 2223333345888887
No 122
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=95.08 E-value=0.026 Score=57.63 Aligned_cols=28 Identities=36% Similarity=0.484 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCCC
Q 019486 79 LPDATPEQIKKAYYNCMKACHPDLSGDD 106 (340)
Q Consensus 79 ~~~as~~eIk~AYr~la~~~HPD~~~~~ 106 (340)
..-.+..+||++||+..+..||||.++.
T Consensus 397 tDLVtp~~VKKaYrKA~L~VHPDKlqq~ 424 (453)
T KOG0431|consen 397 TDLVTPAQVKKAYRKAVLCVHPDKLQQK 424 (453)
T ss_pred hhccCHHHHHHHHHhhhheeCcccccCC
Confidence 3456899999999999999999998775
No 123
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=95.08 E-value=0.0079 Score=58.93 Aligned_cols=59 Identities=22% Similarity=0.482 Sum_probs=36.8
Q ss_pred ccccccccccCCCCcccCCCCcccc-cccCCceEEccCCCCHHHHHH-------------HHHcCCccceecccccc
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEVFKI-EEDFGRARVYNQCGINEFVQQ-------------AIESCPVDCIHRTSAQQ 217 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~F~i-edd~G~a~vv~q~g~~E~v~e-------------Av~~CPv~cI~~~~~~~ 217 (340)
.+.+|...|++|+.|...||..... +.+ .....+..+ +.+.+ |+..||++||.+.+.++
T Consensus 137 ~V~id~dkCigCg~Cv~aCP~gai~~~~~-~~~~~~~KC---~~C~~~~~~R~~~G~~PACv~aCP~gAi~fG~~~e 209 (328)
T PRK10882 137 IVHYDKDVCTGCRYCMVACPFNVPKYDYN-NPFGAIHKC---ELCNQKGVERLDKGGLPGCVEVCPTGAVIFGTREE 209 (328)
T ss_pred cccCCHHHcCcccHHHHhCCccceecccc-ccccceeec---ccccccchhhhhcCCCChhhhhccccceEeccHHH
Confidence 3457888999999999999966532 211 111112222 22223 89999999998766433
No 124
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=95.03 E-value=0.013 Score=54.58 Aligned_cols=61 Identities=21% Similarity=0.411 Sum_probs=40.1
Q ss_pred cccccccccCCCCcccCCCCcc-cccccCCceEEccCCCCHHHHHHHHHcCCccceecccccchhh
Q 019486 156 VFVDEFSCIGCKNCNNVAPEVF-KIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSL 220 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~~F-~iedd~G~a~vv~q~g~~E~v~eAv~~CPv~cI~~~~~~~l~~ 220 (340)
..++...|++|+.|..+||... .+++ +... +. ...+..+..|+..||.+||.....-++..
T Consensus 143 ~~id~~~C~~C~~C~~~CP~~ai~~~~--~~~~-i~-~~~C~~Cg~C~~~CP~~AI~~~~~~~~~~ 204 (234)
T TIGR02700 143 YMIDRKRCKGCGICVDACPRSAIDMVD--GKAF-IR-LLKCVGCGKCKEACPYNAIHGGLEYEMRV 204 (234)
T ss_pred eEEChhHCcCcchHHHhCCcccEEecC--CceE-Ec-hhhCCccchHHhhCCCCceecCCceEEee
Confidence 3568889999999999999653 3332 3222 21 12233445699999999999775544433
No 125
>PRK10194 ferredoxin-type protein; Provisional
Probab=94.95 E-value=0.0074 Score=53.03 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=36.1
Q ss_pred ccccccCCCCcccCCCCcccccccCCceEEccCCCCHHHHHHHHHcCCccceeccc
Q 019486 159 DEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (340)
Q Consensus 159 De~~CiGCg~C~~v~P~~F~iedd~G~a~vv~q~g~~E~v~eAv~~CPv~cI~~~~ 214 (340)
+...|++|+.|..+||......++.|...+.-..+.+.....+++.||+++|....
T Consensus 32 ~~~~C~~Cg~C~~aCp~~~i~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~ai~~~~ 87 (163)
T PRK10194 32 FLTHCTRCDACINACENNILQRGAGGYPSVNFKNNECSFCYACAQACPESLFSPRH 87 (163)
T ss_pred HhhhCcChhHHHHHcChhhcccCCCCceeeeecCCCCCCchhhHhhCcchheeccc
Confidence 45679999999999998765333324222222223344455699999999988653
No 126
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=94.86 E-value=0.014 Score=52.15 Aligned_cols=67 Identities=24% Similarity=0.416 Sum_probs=40.2
Q ss_pred cccccccccCCCCcccCCCCccc-ccccC-----C--c-----eEEccCCCCHH-HH--HHHHHcCCccceecccccchh
Q 019486 156 VFVDEFSCIGCKNCNNVAPEVFK-IEEDF-----G--R-----ARVYNQCGINE-FV--QQAIESCPVDCIHRTSAQQLS 219 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~~F~-iedd~-----G--~-----a~vv~q~g~~E-~v--~eAv~~CPv~cI~~~~~~~l~ 219 (340)
+.++...|++|+.|..+||.... +.... | . ......+..+. .. -.++..||++||.+++..++.
T Consensus 82 v~i~~~~C~~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~~~kC~~C~~~~~~paCv~~CP~~Al~~~~~~~~~ 161 (181)
T PRK10330 82 VHVMQERCIGCKTCVVACPYGAMEVVVRPVIRNSGAGLNVRAEKAEANKCDLCNHREDGPACMAACPTHALICVDRNKLE 161 (181)
T ss_pred EEeChhhCCCcchhhhhCCccCeEeeccccccccccccccccCCceeeeCcCCCCCCCCccchhhCchhhEEEeCHHHHH
Confidence 55688899999999999997643 22110 0 0 00111122111 00 159999999999998776554
Q ss_pred hhH
Q 019486 220 LLE 222 (340)
Q Consensus 220 ~Le 222 (340)
.++
T Consensus 162 ~~~ 164 (181)
T PRK10330 162 QLS 164 (181)
T ss_pred HHH
Confidence 433
No 127
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=94.63 E-value=0.073 Score=45.22 Aligned_cols=58 Identities=19% Similarity=0.242 Sum_probs=41.5
Q ss_pred CCCCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcChh
Q 019486 66 DAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPV 127 (340)
Q Consensus 66 ~~~~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~ 127 (340)
.+....-..||||++..+.++|.+.|.+|-...+|++.+. .-.-.+|..|.+.|....
T Consensus 54 ~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS----fYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 54 GMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGS----FYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp ---HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-----HHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC----HHHHHHHHHHHHHHHHHH
Confidence 3445578999999999999999999999999999998654 555578999999886544
No 128
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=94.54 E-value=0.037 Score=52.36 Aligned_cols=90 Identities=18% Similarity=0.350 Sum_probs=57.4
Q ss_pred cccccCCCCcccCCCC-cccccccCCceEEccCCCCHHHHHHHHHcCCccceecccccchhhhHHHHHHHhhhhhhhhcc
Q 019486 160 EFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVNVAMMLS 238 (340)
Q Consensus 160 e~~CiGCg~C~~v~P~-~F~iedd~G~a~vv~q~g~~E~v~eAv~~CPv~cI~~~~~~~l~~Le~~~~~~~~~~~~~~~~ 238 (340)
...|.+|+.|...||. .|.+++ |...+.. ...+..+..|+..||.+||.+....+-=.+ . .-
T Consensus 168 ~~~C~~C~~C~~~CP~~vi~~~~--~~~~v~~-~~~C~~C~~Ci~~CP~~AI~i~~~~~~~if-------~-------vE 230 (263)
T PRK00783 168 SEDCDECEKCVEACPRGVLELKE--GKLVVTD-LLNCSLCKLCERACPGKAIRVSDDENKFIF-------T-------VE 230 (263)
T ss_pred cccCCchHHHHHhCCccccEecC--CeEEEeC-hhhCCCchHHHHhCCCCceEEEEcCCeEEE-------E-------ec
Confidence 6789999999999997 566755 3333332 223334556999999999998754221000 0 11
Q ss_pred CCCCC-chHHHHHHHHHHHHHHHHHHHHH
Q 019486 239 GMGSG-SADVFRMASSRWERRQAKVLEQA 266 (340)
Q Consensus 239 g~~~~-~~~~~~~a~~~~~~r~~~~~~~~ 266 (340)
..|.. ..+++.+|-.-.+.+...+.++.
T Consensus 231 s~G~l~p~~iv~~A~~~l~~k~~~~~~~~ 259 (263)
T PRK00783 231 SDGSLPVEEILLEALKILKRKADELIEAL 259 (263)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333 37778888888888877666543
No 129
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=94.52 E-value=0.014 Score=58.19 Aligned_cols=58 Identities=24% Similarity=0.350 Sum_probs=38.1
Q ss_pred cccccccccCCCCcccCCCCccccc----ccCC-ceEEc------cCCCCHHHHHHHHHcCCccceecc
Q 019486 156 VFVDEFSCIGCKNCNNVAPEVFKIE----EDFG-RARVY------NQCGINEFVQQAIESCPVDCIHRT 213 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~~F~ie----dd~G-~a~vv------~q~g~~E~v~eAv~~CPv~cI~~~ 213 (340)
+.+|...|++|+.|..+||...... .+.+ ...+. .....|..+..|+..||++||.+.
T Consensus 2 i~id~~kCi~Cg~Cv~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~Ai~~~ 70 (374)
T TIGR02512 2 IVRDMSKCIGCGRCVRACTNVQIVGALGFLNRGGKTEVAPKFGRLLDESNCIGCGQCSLVCPVGAITEK 70 (374)
T ss_pred EEechhhCCcChHhhhhCCHhhccccccccccCCccccccccccccCcccCcCccCHHHhCCCChhhhh
Confidence 4578889999999999999876531 1112 11110 112333445669999999999876
No 130
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.45 E-value=0.03 Score=59.61 Aligned_cols=64 Identities=25% Similarity=0.458 Sum_probs=40.1
Q ss_pred ccccccccccCCCCcccCCCCcc-cccccCC-ceEEccCCCCHHHHH------HHHHcCCccceecccccch
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEVF-KIEEDFG-RARVYNQCGINEFVQ------QAIESCPVDCIHRTSAQQL 218 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~F-~iedd~G-~a~vv~q~g~~E~v~------eAv~~CPv~cI~~~~~~~l 218 (340)
.+.++...|++|+.|..+||... .+..... ..........|+.+. .|+..||++||.+.+..++
T Consensus 79 ~~~id~~~C~~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~C~~C~~~~~~p~Cv~~CP~~Ai~~~~~~~~ 150 (654)
T PRK12769 79 SIQVNQQKCIGCKSCVVACPFGTMQIVLTPVAAGKVKATAHKCDLCAGRENGPACVENCPADALQLVTEQAL 150 (654)
T ss_pred eEEEecccccCcChhcccCCccCeeecccCCcccceeeecCcCcCCCCCCCCCceeccCCcCcEEEecHHHH
Confidence 35678899999999999999663 2332211 000011112222333 5899999999999876554
No 131
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=94.18 E-value=0.058 Score=54.83 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=36.1
Q ss_pred ccccccccccCCC--CcccCCCCcccc-cccCCceEEccC-CCCHHHHHHHHHcCCccceecccc
Q 019486 155 HVFVDEFSCIGCK--NCNNVAPEVFKI-EEDFGRARVYNQ-CGINEFVQQAIESCPVDCIHRTSA 215 (340)
Q Consensus 155 ~vfvDe~~CiGCg--~C~~v~P~~F~i-edd~G~a~vv~q-~g~~E~v~eAv~~CPv~cI~~~~~ 215 (340)
.++.....|.+|+ .|..+||...+. .++.|...+-.. |.++. .|+..||.++|.+...
T Consensus 175 ~m~y~p~~C~HC~nP~CV~ACPtGAI~k~eedGiV~ID~dkCiGCg---~CV~ACPygAI~~n~~ 236 (492)
T TIGR01660 175 FMMYLPRLCEHCLNPACVASCPSGAIYKREEDGIVLIDQDKCRGWR---MCISGCPYKKIYFNWK 236 (492)
T ss_pred eEEECCCcCcCCCcccchhhCccCCeEEecCCCeEEEehhhccChH---HHHHhCCCCCcEecCC
Confidence 3445677788887 788888877653 333353332221 55543 4888888888876643
No 132
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=93.97 E-value=0.02 Score=53.13 Aligned_cols=59 Identities=20% Similarity=0.444 Sum_probs=35.0
Q ss_pred cccccccccCCCCcccCCCCcccc-cccCCceEEccCCCCHH--HHH-----HHHHcCCccceecccccc
Q 019486 156 VFVDEFSCIGCKNCNNVAPEVFKI-EEDFGRARVYNQCGINE--FVQ-----QAIESCPVDCIHRTSAQQ 217 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~~F~i-edd~G~a~vv~q~g~~E--~v~-----eAv~~CPv~cI~~~~~~~ 217 (340)
+.+|...|++|+.|..+||..... +...+ ....+..+. .+. .|++.||++||.+.+.++
T Consensus 120 v~id~~~C~~C~~C~~aCP~~A~~~~~~~~---~~~kC~~C~~~~~~~g~~P~Cv~~Cp~~Ai~f~~~~~ 186 (225)
T TIGR03149 120 VDVHKDLCVGCQYCIAACPYRVRFIHPVTK---SADKCNFCRDTNLAEGKLPACVESCPTKALTFGDLND 186 (225)
T ss_pred EEechhhCCcchHHHHhCCCCCcEecCCCC---ccccCCCCCcchhhCCCCCcccccCccCCEEEecccc
Confidence 446778888888888888876542 21111 112222221 011 488889988888876544
No 133
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=93.80 E-value=0.049 Score=55.37 Aligned_cols=43 Identities=23% Similarity=0.373 Sum_probs=30.9
Q ss_pred cccccCCCCcccCCCCcccccccCCceEEccCCCCHHHHHHHHHcCCcccee
Q 019486 160 EFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIH 211 (340)
Q Consensus 160 e~~CiGCg~C~~v~P~~F~iedd~G~a~vv~q~g~~E~v~eAv~~CPv~cI~ 211 (340)
+..|++|+.|..+||....+++ +. ...|..+..|++.||. ++.
T Consensus 230 ~~~Ci~C~~Cv~vCP~gi~~~~--~~------~~~Ci~Cg~CidaCp~-a~~ 272 (434)
T TIGR02745 230 LGDCIDCNLCVQVCPTGIDIRD--GL------QLECINCGLCIDACDD-VME 272 (434)
T ss_pred CCCCCChhhhHHhCCCCCEeCC--CC------chhChhhhHHHHhCCC-hHH
Confidence 5679999999999998844332 21 1345567779999997 543
No 134
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=93.79 E-value=0.071 Score=58.53 Aligned_cols=59 Identities=15% Similarity=0.335 Sum_probs=39.8
Q ss_pred ccccccccccCCCCcccCCCCc-----ccccccCCceEEccC----CCCHHHHHHHHHcCCccceeccc
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQ----CGINEFVQQAIESCPVDCIHRTS 214 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~-----F~iedd~G~a~vv~q----~g~~E~v~eAv~~CPv~cI~~~~ 214 (340)
.+..|...||.|+.|+.+|.++ +.+... |....+.. .-+++.+-+||+.|||+||.-.+
T Consensus 143 ~i~~d~~rCi~C~rCVr~c~e~~g~~~l~~~~~-~~~~~~~~~~~~~~~~~~~G~cv~vCP~GAl~~k~ 210 (847)
T PRK08166 143 FISHEMNRCIACYRCVRYYKDYAGGTDLGVYGA-HDNVYFGRPEDGTLESEFSGNLVEVCPTGVFTDKT 210 (847)
T ss_pred ceEecCCcCccccHHHHHHHhhcCcceEEEeec-CceeEecCCCCCcccChhhCChHhhCCchhccccc
Confidence 4567899999999999999654 222222 33333322 22446778899999999988554
No 135
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=93.67 E-value=0.012 Score=35.44 Aligned_cols=21 Identities=48% Similarity=0.991 Sum_probs=18.2
Q ss_pred cccccccccCCCCcccCCCCc
Q 019486 156 VFVDEFSCIGCKNCNNVAPEV 176 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~~ 176 (340)
+.+|+..|+||+.|..+||..
T Consensus 2 ~~id~~~C~~Cg~C~~~Cp~~ 22 (24)
T PF12837_consen 2 VVIDPDKCIGCGDCVRVCPEG 22 (24)
T ss_pred cEEChhhCcChhHHHHhcchh
Confidence 467899999999999999963
No 136
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=93.61 E-value=0.0093 Score=57.25 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=43.5
Q ss_pred cccccccccCCCCcccCCCCc---ccc--cccCCceEEccC-CCC--HH--HHHHHHHcCCccceecccccchhhhHHH
Q 019486 156 VFVDEFSCIGCKNCNNVAPEV---FKI--EEDFGRARVYNQ-CGI--NE--FVQQAIESCPVDCIHRTSAQQLSLLEDE 224 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~~---F~i--edd~G~a~vv~q-~g~--~E--~v~eAv~~CPv~cI~~~~~~~l~~Le~~ 224 (340)
+.+|...||.|+.|+.+|.++ +.| ... |....+.. .+. ++ ....+++.|||+||...+.++.+++...
T Consensus 207 i~~D~nKCIlCgRCVRaC~EVqg~~aL~~~~R-G~~t~I~t~~d~~~~~~~~~g~cvdvCPvGAL~~~d~~~~~~~~~~ 284 (297)
T PTZ00305 207 TRVVLNRCIHCTRCVRFLNEHAQDFNLGMIGR-GGLSEISTFLDELEVKTDNNMPVSQLCPVGKLYLGDADENNAIARE 284 (297)
T ss_pred eeecCCcCcCccHHHHHHHHhhCCcEEEEeec-CCCCEEeecCCCcccccCCCCceeeECCCcccccCCcccchHHHHH
Confidence 446789999999999999664 222 222 33222222 221 11 1235899999999999888777665443
No 137
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=93.60 E-value=0.044 Score=58.47 Aligned_cols=112 Identities=22% Similarity=0.353 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhcCCC------CCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccc-cccccccCCCCCCCCCCCcc
Q 019486 84 PEQIKKAYYNCMKACHPD------LSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH-GYSLIATNPFLDDSCPKDHV 156 (340)
Q Consensus 84 ~~eIk~AYr~la~~~HPD------~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~-~~~~~~ldp~~~~~~p~~~v 156 (340)
..++++---.+.+..||= .+.++ -.|+.+-..|.=..+|--|+.-. .+.....+|| .
T Consensus 81 vk~~r~~~md~~l~nH~LyC~vCd~nnGd-------Celh~~~~~~gl~~q~y~y~~k~~~~~~Des~Pf---------y 144 (978)
T COG3383 81 VKEARREAMDRILSNHPLYCTVCDNNNGD-------CELHNMVMALGLTEQRYPYEEKNPPYPKDESNPF---------Y 144 (978)
T ss_pred HHHHHHHHHHHHHhcCCcCccccCCCCCC-------chHHHHHHHhCCCccccCccccCCCCCcccCCCe---------E
Confidence 344555555566888984 33232 23455555555555555555421 1111122232 2
Q ss_pred ccccccccCCCCcccCCCCc---ccccccC--CceEEccC------CCCHHHHHHHHHcCCcccee
Q 019486 157 FVDEFSCIGCKNCNNVAPEV---FKIEEDF--GRARVYNQ------CGINEFVQQAIESCPVDCIH 211 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~---F~iedd~--G~a~vv~q------~g~~E~v~eAv~~CPv~cI~ 211 (340)
.-|...||-||.|+.+|.++ +.+.-+| -..+|+-. ...|..+-.||+.|||+|+-
T Consensus 145 ~ydp~qCIlCgRCVeaCqevqv~eaL~i~w~~~~pRV~wd~~~~i~~SSCVsCG~CvtVCP~nALm 210 (978)
T COG3383 145 IYDPNQCILCGRCVEACQEVQVNEALTIDWRGEDPRVIWDNDVPINESSCVSCGACVTVCPVNALM 210 (978)
T ss_pred EecchheeehhHHHHHHHhhhceeEEEeecccCCcceecCCCCccccccccccCccceecchhhhh
Confidence 35788999999999999754 4444332 23445443 22344566799999999964
No 138
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=93.53 E-value=0.023 Score=61.98 Aligned_cols=59 Identities=20% Similarity=0.388 Sum_probs=39.3
Q ss_pred ccccccccccCCCCcccCCCCccc-----ccccCCceE-----------------------Ec-c---CCCCHHHHHHHH
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEVFK-----IEEDFGRAR-----------------------VY-N---QCGINEFVQQAI 202 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~F~-----iedd~G~a~-----------------------vv-~---q~g~~E~v~eAv 202 (340)
.+..|...||.|+.|+.+|+++-. +..+ |... .+ . ...+|..+-+|+
T Consensus 135 ~I~~D~~rCI~C~RCVr~C~ev~g~~al~~~~R-G~~~~~~~~~~~~~~da~~~~~~~~~~~i~~~~~~~~~C~~CG~Cv 213 (819)
T PRK08493 135 KINYDPSLCIVCERCVTVCKDKIGESALKTVPR-GLDAPDKSFKESMPKDAYAVWSKKQKSLIGPVGGETLDCSFCGECI 213 (819)
T ss_pred cEEechhhcccccHHHhhCcccccchhhhhccC-CcccccccccccccccchhhhhhcccceecccCCCcccccccCcHH
Confidence 467799999999999999987421 1111 2111 11 1 123455667899
Q ss_pred HcCCccceeccc
Q 019486 203 ESCPVDCIHRTS 214 (340)
Q Consensus 203 ~~CPv~cI~~~~ 214 (340)
+.|||+||...+
T Consensus 214 ~VCPvGAL~~k~ 225 (819)
T PRK08493 214 AVCPVGALSSSD 225 (819)
T ss_pred HhCCCCccccCc
Confidence 999999998764
No 139
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=93.45 E-value=0.021 Score=33.68 Aligned_cols=19 Identities=37% Similarity=0.933 Sum_probs=16.9
Q ss_pred cccccccccCCCCcccCCC
Q 019486 156 VFVDEFSCIGCKNCNNVAP 174 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P 174 (340)
.++|...|+||+.|...||
T Consensus 3 ~~iD~~rCiGC~~C~~AC~ 21 (22)
T PF12797_consen 3 MVIDLERCIGCGACEVACP 21 (22)
T ss_pred eEEccccccCchhHHHhhC
Confidence 5689999999999998886
No 140
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=93.21 E-value=0.029 Score=53.36 Aligned_cols=57 Identities=23% Similarity=0.307 Sum_probs=40.0
Q ss_pred ccccccccccCCCCcccCCCCcccccccCCceEEccC--CCCHHHHHHHHHcCCccceecccc
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ--CGINEFVQQAIESCPVDCIHRTSA 215 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~F~iedd~G~a~vv~q--~g~~E~v~eAv~~CPv~cI~~~~~ 215 (340)
...++...|+.||.|..+|+.....-.. |..-++.+ |.+|.. |.-.||++||..++.
T Consensus 63 ~p~i~~e~C~~CG~C~~vC~f~Ai~~~~-~~~~~~~~~lC~GCga---C~~~CP~~AI~~~~~ 121 (284)
T COG1149 63 IPEIDPEKCIRCGKCAEVCRFGAIVVLP-GGKPVLNPDLCEGCGA---CSIVCPEPAIEEEPV 121 (284)
T ss_pred ccccChhhccccCcHHHhCCCCeEEEcC-CCceecCcccccCccc---ceeeCCCcccccccc
Confidence 4456788899999999999988765322 33333422 555544 888999999997643
No 141
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=93.07 E-value=0.15 Score=48.22 Aligned_cols=88 Identities=17% Similarity=0.325 Sum_probs=53.7
Q ss_pred cccccCCCCcccCCCCc-ccccccCCceEEccCCCCHHHHHHHHHcCCccceecccccchhhhHHHHHHHhhhhhhhhcc
Q 019486 160 EFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVNVAMMLS 238 (340)
Q Consensus 160 e~~CiGCg~C~~v~P~~-F~iedd~G~a~vv~q~g~~E~v~eAv~~CPv~cI~~~~~~~l~~Le~~~~~~~~~~~~~~~~ 238 (340)
...|.+|+.|...||.. +.+++ +...+... ..|..+.+|+..||.++|.+....+--.+ . .-
T Consensus 168 ~~~C~~C~~C~~~CP~~vi~~d~--~~~~v~~~-~~C~~C~~C~~~Cp~~AI~~~~~~~~~if----------~----vE 230 (259)
T cd07030 168 DEDCDGCGKCVEECPRGVLELEE--GKVVVEDL-EDCSLCKLCERACDAGAIRVGWDEDRFIF----------E----VE 230 (259)
T ss_pred hhhCCChHHHHHhCCccceEccC--CeeEEeCh-hhCcCchHHHHhCCCCcEEEEecCCEEEE----------E----Ee
Confidence 36799999999999976 44544 32333222 23334556999999999998643221110 0 11
Q ss_pred CCCCC-chHHHHHHHHHHHHHHHHHHH
Q 019486 239 GMGSG-SADVFRMASSRWERRQAKVLE 264 (340)
Q Consensus 239 g~~~~-~~~~~~~a~~~~~~r~~~~~~ 264 (340)
+.|.. ..+++..|-.-++.+...+.+
T Consensus 231 s~Gsl~p~~il~~A~~~l~~k~~~~~~ 257 (259)
T cd07030 231 SDGSLPPKEILLEALRILKEKADELIE 257 (259)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 22333 377788888877777665543
No 142
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=92.71 E-value=0.13 Score=54.37 Aligned_cols=59 Identities=24% Similarity=0.437 Sum_probs=39.1
Q ss_pred ccccccccccCCCCcccCCCCc-----ccccccCCceEEc-cCCC---CHHHHHHHHHcCCccceeccc
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVY-NQCG---INEFVQQAIESCPVDCIHRTS 214 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~-----F~iedd~G~a~vv-~q~g---~~E~v~eAv~~CPv~cI~~~~ 214 (340)
.+..|...||.|+.|+.+|-++ +.+... |....+ ...+ +++.+-+||+.|||+||.-.+
T Consensus 136 ~i~~d~~rCI~C~rCvr~c~e~~g~~~l~~~~r-g~~~~i~~~~~~~~~~~~cg~cv~vCP~GAl~~k~ 203 (603)
T TIGR01973 136 LIKTEMTRCIHCTRCVRFANEVAGVEDLGVIGR-GNNVEIGTYEGKTLESELSGNLIDICPVGALTSKP 203 (603)
T ss_pred CeEecCCcCccccHHHHHHHHhhCCceEEEecc-CCCCEEecCCCCCCCCcccCChHhhCCcccccccc
Confidence 4567999999999999999543 333333 333322 2211 345677899999999987543
No 143
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=92.39 E-value=0.052 Score=61.52 Aligned_cols=60 Identities=17% Similarity=0.203 Sum_probs=37.7
Q ss_pred ccccccccCCCCcccCCCCcccccc-----------------------cCCce-EEccCCCCHHHHHHHHHcCCc--cce
Q 019486 157 FVDEFSCIGCKNCNNVAPEVFKIEE-----------------------DFGRA-RVYNQCGINEFVQQAIESCPV--DCI 210 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~F~ied-----------------------d~G~a-~vv~q~g~~E~v~eAv~~CPv--~cI 210 (340)
..+...|++|+.|..+||...+.-. ..+.. .+.....+|..|..|++.||+ +||
T Consensus 679 ~~~~~~Ci~Cg~C~~vCP~~ai~~~~~~~~~~~~ap~~~~~~~~~~~~~~~~~~~i~i~~~~C~gCg~Cv~~CP~~~~Al 758 (1165)
T TIGR02176 679 VWVPDNCIQCNQCAFVCPHAAIRPKLADEEELENAPAGFKSLDAKGKELEGMKFRIQISPLDCTGCGNCVDICPAKEKAL 758 (1165)
T ss_pred eeccccCCCccchHHhcChhhccccccchhhhhcCcccchhhhhhcccccccceeEEeccccCcCccchhhhcCCCCccc
Confidence 3578899999999999996633100 00111 111123344455669999999 499
Q ss_pred eccccc
Q 019486 211 HRTSAQ 216 (340)
Q Consensus 211 ~~~~~~ 216 (340)
.+++..
T Consensus 759 ~m~~~~ 764 (1165)
T TIGR02176 759 VMQPLA 764 (1165)
T ss_pred cccchh
Confidence 987654
No 144
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=92.36 E-value=0.066 Score=46.80 Aligned_cols=58 Identities=24% Similarity=0.554 Sum_probs=32.6
Q ss_pred cccccccccCCCCcccCCCCcc-cccccCCceEEccCCCCH-HHHH-----HHHHcCCccceeccccc
Q 019486 156 VFVDEFSCIGCKNCNNVAPEVF-KIEEDFGRARVYNQCGIN-EFVQ-----QAIESCPVDCIHRTSAQ 216 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~~F-~iedd~G~a~vv~q~g~~-E~v~-----eAv~~CPv~cI~~~~~~ 216 (340)
+.++...|++|+.|...||... .++...+. ...+..+ +.+. .++..||++||.+.+.+
T Consensus 90 ~~i~~~~C~~C~~C~~aCP~~ai~~~~~~~~---~~kC~~C~~r~~~g~~p~Cv~~Cp~~Ai~~~~~~ 154 (161)
T TIGR02951 90 VLVDQDKCIGCRYCVWACPYGAPQYDPQQGV---MGKCDGCYDRVEKGLRPACVDACPMRALDFGPID 154 (161)
T ss_pred EEECHHhCCCchHHHhhCCCCCcEEcCCCCc---cccCCCCHHHHHCCCCCcchhhccccceEEecHH
Confidence 4466777888888888888543 23322121 1122222 1111 47888888888876543
No 145
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=92.24 E-value=0.042 Score=53.37 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=36.7
Q ss_pred ccccccccCCCCcccCCCCcc--cccccCCceEEccCCCCHHHHHHHHHcCCccceeccc
Q 019486 157 FVDEFSCIGCKNCNNVAPEVF--KIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~F--~iedd~G~a~vv~q~g~~E~v~eAv~~CPv~cI~~~~ 214 (340)
.+|...|++|+.|..+||... .+.-..+ ..++ ....|..+..|+..||++||....
T Consensus 165 ~~d~~~C~~Cg~C~~~Cp~~a~~ai~~~~~-~~~i-d~~~C~~Cg~Cv~~CP~~Al~~~~ 222 (314)
T TIGR02912 165 QYDADRCIGCGACVKVCKKKAVGALSFENY-KVVR-DHSKCIGCGECVLKCPTGAWTRSE 222 (314)
T ss_pred ceeCccCCcchHHHHhcChhhcCceeccCC-eEEe-CCCcCcCcchhhhhCCHhhcccCc
Confidence 468888999999999999632 1221213 2222 222344455699999999998654
No 146
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=92.23 E-value=0.12 Score=54.61 Aligned_cols=51 Identities=29% Similarity=0.537 Sum_probs=34.8
Q ss_pred CccccccccccCCCCccc--CCCCcccccccCCceEEccCCCCHHHHHHHHHcCCccce
Q 019486 154 DHVFVDEFSCIGCKNCNN--VAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCI 210 (340)
Q Consensus 154 ~~vfvDe~~CiGCg~C~~--v~P~~F~iedd~G~a~vv~q~g~~E~v~eAv~~CPv~cI 210 (340)
..+.+|...|++|+.|.. .||.. ..++ +... +.. .|-.+..|+..||.+||
T Consensus 543 ~~~~id~~~C~~C~~C~~~~~CP~~-~~~~--~~~~-i~~--~C~~Cg~C~~~CP~~Ai 595 (595)
T TIGR03336 543 GPYKVDQDKCIGCKKCIKELGCPAI-EPED--KEAV-IDP--LCTGCGVCAQICPFDAI 595 (595)
T ss_pred ceEEEcCCcCCCccccccccCCCCc-cccC--Ccce-eCC--CCcCHHHHHhhCccccC
Confidence 356788999999999999 99943 2222 3222 222 24445569999999987
No 147
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=92.16 E-value=0.029 Score=33.61 Aligned_cols=21 Identities=33% Similarity=0.716 Sum_probs=16.3
Q ss_pred ccccccccCCCCcccCCCCcc
Q 019486 157 FVDEFSCIGCKNCNNVAPEVF 177 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~F 177 (340)
.+|...|++||.|...||...
T Consensus 2 ~id~~~C~~Cg~C~~~CP~~a 22 (24)
T PF00037_consen 2 VIDPDKCIGCGRCVEACPFDA 22 (24)
T ss_dssp EEETTTSSS-THHHHHSTTSS
T ss_pred EEchHHCCCcchhhhhccccc
Confidence 467888999999999998764
No 148
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=92.05 E-value=0.14 Score=55.75 Aligned_cols=59 Identities=19% Similarity=0.414 Sum_probs=38.2
Q ss_pred ccccccccccCCCCcccCCCCc-----ccccccCCceE-EccC---CCCHHHHHHHHHcCCccceeccc
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRAR-VYNQ---CGINEFVQQAIESCPVDCIHRTS 214 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~-----F~iedd~G~a~-vv~q---~g~~E~v~eAv~~CPv~cI~~~~ 214 (340)
.+..|...||.|+.|+.+|-++ +.+... |... +... .-+++.+-+||+.|||+||.-.+
T Consensus 138 ~i~~d~~rCi~C~rCvr~c~ev~g~~~l~~~~r-g~~~~i~~~~~~~~~~~~cg~cv~~CP~GAl~~k~ 205 (776)
T PRK09129 138 LISTEMTRCIHCTRCVRFGQEIAGVMELGMMGR-GEHSEITTYVGKTVDSELSGNMIDLCPVGALTSKP 205 (776)
T ss_pred ceeecccccccCcHHHHHHHHhcCCceeeeecc-CCCCEEcCCCCCCccCcccCCchhhCCcccccccc
Confidence 4556889999999999999654 222222 3222 2221 12345677899999999988543
No 149
>PRK07118 ferredoxin; Validated
Probab=92.02 E-value=0.13 Score=49.45 Aligned_cols=53 Identities=26% Similarity=0.538 Sum_probs=36.8
Q ss_pred ccccccCCCCcccCCCCcccccccCCceEEccC-CCCHHHHHHHHHcCCccceecccc
Q 019486 159 DEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ-CGINEFVQQAIESCPVDCIHRTSA 215 (340)
Q Consensus 159 De~~CiGCg~C~~v~P~~F~iedd~G~a~vv~q-~g~~E~v~eAv~~CPv~cI~~~~~ 215 (340)
....|++|+.|..+||.....-++ +...+-.+ +..+ ..+++.||+++|.+...
T Consensus 211 ~~~~Ci~Cg~Cv~~CP~~AI~~~~-~~~vId~~~C~~C---g~C~~~CP~~AI~~~~~ 264 (280)
T PRK07118 211 CEVGCIGCGKCVKACPAGAITMEN-NLAVIDQEKCTSC---GKCVEKCPTKAIRILNK 264 (280)
T ss_pred cccccccchHHHhhCCcCcEEEeC-CcEEEcCCcCCCH---HHHHHhCCccccEeecc
Confidence 467799999999999976443233 33333222 4444 45999999999998754
No 150
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=92.01 E-value=0.035 Score=52.18 Aligned_cols=20 Identities=35% Similarity=0.818 Sum_probs=10.3
Q ss_pred ccccccccCCCCcccCCCCc
Q 019486 157 FVDEFSCIGCKNCNNVAPEV 176 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~ 176 (340)
.+|...|+||+.|..+||..
T Consensus 126 ~id~~~CigC~~Cv~aCP~~ 145 (244)
T PRK14993 126 VVDNKRCVGCAYCVQACPYD 145 (244)
T ss_pred EEcHHHCCCHHHHHHhcCCC
Confidence 34555555555555555543
No 151
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=91.78 E-value=0.26 Score=49.35 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=36.9
Q ss_pred ccccccccccCCCCcc--cCCCCcccccccCCceEEccCCCCHHHHHHHHHcCCccceecccc
Q 019486 155 HVFVDEFSCIGCKNCN--NVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~--~v~P~~F~iedd~G~a~vv~q~g~~E~v~eAv~~CPv~cI~~~~~ 215 (340)
...++...|++|+.|. .+||......+ . .+.. ..|..+..|+..||.+||.+...
T Consensus 296 ~p~id~dkCi~Cg~C~~~~aCPt~AI~~~--~---~Id~-~~Ci~CGaCV~aCP~~AI~~~~~ 352 (391)
T TIGR03287 296 RPKYNPERCENCDPCLVEEACPVPAIKKD--G---TLNT-EDCFGCGYCAEICPGGAFEVNLG 352 (391)
T ss_pred eEEEchhhCcCCCCCcCCcCCCHhhEecc--c---eeCh-HhCcChHHHHhhCCccceEEeCC
Confidence 4457888999999995 89997654322 1 2222 12223445999999999998643
No 152
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=91.76 E-value=0.047 Score=53.15 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=28.4
Q ss_pred cccccccccCCCCcccCCCCccc-ccccCCceEEccCCCCHH------HHHHHHHcCCccceecccc
Q 019486 156 VFVDEFSCIGCKNCNNVAPEVFK-IEEDFGRARVYNQCGINE------FVQQAIESCPVDCIHRTSA 215 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~~F~-iedd~G~a~vv~q~g~~E------~v~eAv~~CPv~cI~~~~~ 215 (340)
+.+|...|++|+.|..+||.... ++...+ +...+..|. ..-.|+..||.+||.+.+.
T Consensus 157 V~ID~ekCiGCg~Cv~ACPygAi~~n~~~~---~~eKC~~C~~Rie~G~~PaCv~aCP~~A~~fGdl 220 (321)
T TIGR03478 157 VLVDQERCKGYRYCVEACPYKKVYFNPQSQ---KSEKCIGCYPRIEKGIAPACVKQCPGRIRFVGYL 220 (321)
T ss_pred EEECHHHCcchHHHHHhCCCCCcEecCCCC---chhhCCCchhhhccCCCCHHHhhcCcccEEEEeC
Confidence 34666677777777777775432 222111 112233221 0123677777777666543
No 153
>PRK13795 hypothetical protein; Provisional
Probab=91.71 E-value=0.057 Score=57.50 Aligned_cols=55 Identities=24% Similarity=0.422 Sum_probs=36.0
Q ss_pred cccccccccCCCCcccCCCCcc-cccccCCceEEccCCCCHHHHHHHHHcCCccceec
Q 019486 156 VFVDEFSCIGCKNCNNVAPEVF-KIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR 212 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~~F-~iedd~G~a~vv~q~g~~E~v~eAv~~CPv~cI~~ 212 (340)
+..+...|++|+.|...||... .++++ .....+.. +.|..+..|+..||..+|..
T Consensus 576 ~v~~~~~C~~Cg~C~~~CP~~ai~~~~~-~~~~~id~-~~C~~Cg~C~~aCP~~a~~~ 631 (636)
T PRK13795 576 LLRRAAECVGCGVCVGACPTGAIRIEEG-KRKISVDE-EKCIHCGKCTEVCPVVKYKD 631 (636)
T ss_pred EEEccccCCCHhHHHHhCCcccEEeecC-CceEEech-hhcCChhHHHhhcCCCeeEe
Confidence 3456789999999999999764 33332 22122221 22334455999999999874
No 154
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=91.69 E-value=0.024 Score=39.91 Aligned_cols=48 Identities=23% Similarity=0.549 Sum_probs=21.5
Q ss_pred cccCCCCcccCCCCcc-ccccc---CCceEEccCCCCHHHHHHHHHcCCccc
Q 019486 162 SCIGCKNCNNVAPEVF-KIEED---FGRARVYNQCGINEFVQQAIESCPVDC 209 (340)
Q Consensus 162 ~CiGCg~C~~v~P~~F-~iedd---~G~a~vv~q~g~~E~v~eAv~~CPv~c 209 (340)
.|+||+.|..+||... .+... .+...+......+.....++..||++|
T Consensus 1 ~C~~C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~A 52 (52)
T PF12838_consen 1 KCIGCGACVEACPTGAIRLDEEENEEGKPKMVIDPDKCTGCGACVEVCPTGA 52 (52)
T ss_dssp C-SS--HHHHH-TTHHCEEEETTT-SSSTTSEETGGG----SHHHHHTTTS-
T ss_pred CCCCcCchHHhcCccccCcccccccCCceEEEEechhCcCcChhhhhCcCcC
Confidence 4899999999999663 23221 121111111222334455999999875
No 155
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=91.39 E-value=0.091 Score=58.63 Aligned_cols=81 Identities=19% Similarity=0.315 Sum_probs=48.0
Q ss_pred ccccccC----CCCcccCCCCcccc--cc-cC-CceEEccCCCCHHHHHHHHHcCCccceecccccchhhhHHHHHHHhh
Q 019486 159 DEFSCIG----CKNCNNVAPEVFKI--EE-DF-GRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVER 230 (340)
Q Consensus 159 De~~CiG----Cg~C~~v~P~~F~i--ed-d~-G~a~vv~q~g~~E~v~eAv~~CPv~cI~~~~~~~l~~Le~~~~~~~~ 230 (340)
+...|.+ |+.|..+||....+ +. .+ +....+.....|..+..|+..||.+++.+... +.+++.-..=...
T Consensus 879 ~~~rC~~c~~~Cg~Cv~vCP~~Aii~i~~~~~~~~~~~i~~d~~C~~CG~C~~vCP~~a~~~~gk--~~~~~kd~~fy~~ 956 (1012)
T TIGR03315 879 ESQRCLECSYVCEKCVDVCPNRANIVIYVPGFRDQFQIVHLDGMCNECGNCATFCPYDGAPYKDK--LTLFWLEEDFYNS 956 (1012)
T ss_pred ccccccCCCCCCCChhhhCChhhhhccccccccCCceeeecCccccccchHHHhCCCCcccceee--eeeecchHHHHhc
Confidence 4478997 99999999988642 21 11 11222222223555666999999999988766 3333332222444
Q ss_pred hhhhhhccCCC
Q 019486 231 VNVAMMLSGMG 241 (340)
Q Consensus 231 ~~~~~~~~g~~ 241 (340)
.+.|++.+|+.
T Consensus 957 sggGvTlsGGE 967 (1012)
T TIGR03315 957 TNSGFLVEDPV 967 (1012)
T ss_pred cCCcEEEECCC
Confidence 44565555543
No 156
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=91.34 E-value=0.084 Score=56.11 Aligned_cols=60 Identities=28% Similarity=0.553 Sum_probs=39.5
Q ss_pred cccccccccCCCCcccCCCCcc-cccccCCceEEccCCCCHH----HHHHHHHcCCccceecccccchhh
Q 019486 156 VFVDEFSCIGCKNCNNVAPEVF-KIEEDFGRARVYNQCGINE----FVQQAIESCPVDCIHRTSAQQLSL 220 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~~F-~iedd~G~a~vv~q~g~~E----~v~eAv~~CPv~cI~~~~~~~l~~ 220 (340)
+.+|...|++|+.|..+||... .+.+. . ...+..+. ....|+..||++||.+.+..++..
T Consensus 80 v~~d~~~C~gC~~C~~~CP~~ai~~~~~--~---~~kC~~C~~~~~~~~~Cv~~CP~~Ai~~~~~~~~~~ 144 (639)
T PRK12809 80 VQLDEQKCIGCKRCAIACPFGVVEMVDT--I---AQKCDLCNQRSSGTQACIEVCPTQALRLMDDKGLQQ 144 (639)
T ss_pred eecChhhCcchhhHhhhcCCCCEEccCC--C---cccccCCcccCCCCChhhhhCccceEEEechHHHHH
Confidence 5678889999999999999653 33222 1 11121111 123599999999999987655543
No 157
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=91.29 E-value=0.14 Score=53.50 Aligned_cols=58 Identities=19% Similarity=0.374 Sum_probs=35.4
Q ss_pred cccccccccCC------CCcccCCCCcccccccCCceEEccCCCCHHHHHHHHHcCCccceeccc
Q 019486 156 VFVDEFSCIGC------KNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (340)
Q Consensus 156 vfvDe~~CiGC------g~C~~v~P~~F~iedd~G~a~vv~q~g~~E~v~eAv~~CPv~cI~~~~ 214 (340)
+..+...|+.| +.|..+||.........+....+. ...|..+..|+..||.+||.++.
T Consensus 499 ~~~~~~rCl~C~~c~~C~~C~~~Cp~~ai~~~~~~~~~~i~-~~~C~~Cg~C~~~CP~~Ai~~~~ 562 (564)
T PRK12771 499 ARQEAARCLSCGNCFECDNCYGACPQDAIIKLGPGRRYHFD-YDKCTGCHICADVCPCGAIEMGP 562 (564)
T ss_pred hhhhcccCcccccccccchhhhhCChhheeeecCCceEEEe-cccCcChhHHHhhcCcCceEecc
Confidence 34466667766 889999998754322113222222 12233344599999999999864
No 158
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=91.29 E-value=0.032 Score=59.65 Aligned_cols=73 Identities=18% Similarity=0.352 Sum_probs=48.0
Q ss_pred cccccccCCCCcccCCCCccccc-----ccCCceEEc----cCCCCHHHHHHHHHcCCccceecccccchhhhHHHHHHH
Q 019486 158 VDEFSCIGCKNCNNVAPEVFKIE-----EDFGRARVY----NQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRV 228 (340)
Q Consensus 158 vDe~~CiGCg~C~~v~P~~F~ie-----dd~G~a~vv----~q~g~~E~v~eAv~~CPv~cI~~~~~~~l~~Le~~~~~~ 228 (340)
.|...||-|+.|+.+|.+...+. .+ |....+ .+.-..+.+-+||+.|||+||.-.+. +...-.|.|.+.
T Consensus 141 ~dm~RCI~C~RCVR~c~eiaG~~~l~~~~r-g~~~~i~t~~~~~l~se~cGncv~vCPvGALt~K~~-~~~ar~wEl~k~ 218 (693)
T COG1034 141 YDMNRCILCTRCVRFCKEIAGTHELGVIKR-GENSEIGTYLDQPLESELCGNCVDVCPVGALTSKPF-AFTARKWELKKT 218 (693)
T ss_pred cccccceechhhHHhhhhhcCccccceeec-CCCceeecccccccccccccceeeeccccccccChH-HhhhccchhccC
Confidence 78999999999999997664322 22 222222 22223367888999999999997766 555555566555
Q ss_pred hhhh
Q 019486 229 ERVN 232 (340)
Q Consensus 229 ~~~~ 232 (340)
+.+.
T Consensus 219 ~si~ 222 (693)
T COG1034 219 PSIC 222 (693)
T ss_pred ceee
Confidence 5443
No 159
>PRK10194 ferredoxin-type protein; Provisional
Probab=91.24 E-value=0.089 Score=46.16 Aligned_cols=49 Identities=20% Similarity=0.407 Sum_probs=30.5
Q ss_pred ccCCCCcccCCCCccc-cccc-CCce-EEcc--CCCCHHHHHHHHHcCCccceeccc
Q 019486 163 CIGCKNCNNVAPEVFK-IEED-FGRA-RVYN--QCGINEFVQQAIESCPVDCIHRTS 214 (340)
Q Consensus 163 CiGCg~C~~v~P~~F~-iedd-~G~a-~vv~--q~g~~E~v~eAv~~CPv~cI~~~~ 214 (340)
|++|+.|..+||...+ ++.. .|.. .++. .+.+ ...++..||++||.++.
T Consensus 106 ~~~C~~C~~~CP~~Ai~~~~~~~~~~~~~i~~~~C~g---Cg~C~~~CP~~AI~~~~ 159 (163)
T PRK10194 106 SVECRRCQDSCEPMAIIFRPTLSGIYQPQLNSQLCNG---CGACAASCPVSAITAEY 159 (163)
T ss_pred CCCcCcchhhCCHhHeEeeecCCCcccceeCcccCcC---cchhhhhCCccceEecc
Confidence 3789999999997643 3221 1221 1222 1333 44599999999999754
No 160
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=90.81 E-value=0.21 Score=48.26 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=43.7
Q ss_pred CCccccccccccCCCCcccCCCCcccccccCCceEEccCCCCHHHHHHHHHcCCcccee--cccccchhhhHHHH
Q 019486 153 KDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIH--RTSAQQLSLLEDEM 225 (340)
Q Consensus 153 ~~~vfvDe~~CiGCg~C~~v~P~~F~iedd~G~a~vv~q~g~~E~v~eAv~~CPv~cI~--~~~~~~l~~Le~~~ 225 (340)
.+..++.++.|..|+.|...||...+-.. .+...-+. .|--+..|.+.||..++. |++..+ .+||-.+
T Consensus 185 ~~~p~v~e~kc~~c~~cv~~cp~~Ai~~~-~~~~I~~~---~ci~c~~c~~ac~~gav~~~W~~~~~-~f~e~m~ 254 (354)
T COG2768 185 DEKPVVVEEKCYDCGLCVKICPVGAITLT-KVVKIDYE---KCIGCGQCMEACPYGAVDQNWEEDSP-EFLERMA 254 (354)
T ss_pred ccCceeeeecccccchhhhhCCCcceecc-cceeechh---hccchhhhhhhccCcccccchhhccH-HHHHHHH
Confidence 34567899999999999999998875432 12222222 233455699999999976 554432 4444433
No 161
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=90.81 E-value=0.23 Score=37.54 Aligned_cols=55 Identities=18% Similarity=0.437 Sum_probs=42.9
Q ss_pred ccccccccccCCCCcccCCCCcccccccCCceEEccCCCCHHHHHHHHHcCCccceec
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR 212 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~F~iedd~G~a~vv~q~g~~E~v~eAv~~CPv~cI~~ 212 (340)
.++.....|+-.+.|+.-.|.+|.++.. -=++++.++.|.++..+++||..||..
T Consensus 17 di~fn~~iC~Hs~nCV~Gn~~vF~~~rk---PWI~Pd~~~ve~i~~vi~sCPSGAl~Y 71 (74)
T COG3592 17 DIYFNTAICAHSGNCVRGNPKVFNLGRK---PWIMPDAVDVEEIVKVIDTCPSGALKY 71 (74)
T ss_pred EEEeccceeecccceecCCHhhcccCCC---CccCCCCCCHHHHHHHHHhCCchhhhe
Confidence 3444566799999999999999988421 124555778899999999999999875
No 162
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=90.70 E-value=0.12 Score=48.21 Aligned_cols=53 Identities=25% Similarity=0.537 Sum_probs=36.1
Q ss_pred ccccccccccCCCCcccCCCCcc-cccccCCceEEcc-CCCCHHHHHHHHHcCCccceec
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEVF-KIEEDFGRARVYN-QCGINEFVQQAIESCPVDCIHR 212 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~F-~iedd~G~a~vv~-q~g~~E~v~eAv~~CPv~cI~~ 212 (340)
...++...|++|+.|...||... .++. +...+.. .+.+ +..|+..||.++|.-
T Consensus 168 ~~~id~~~C~~C~~C~~aCP~~ai~~~~--~~~~i~~~~C~~---C~~C~~~CP~~~~~~ 222 (228)
T TIGR03294 168 TKVVNQGLCMGCGTCAAACPTRAIEMED--GRPNVNRDRCIK---CGACYVQCPRAFWPE 222 (228)
T ss_pred eEEEChhhCcChhHHHHhCCHhhEEEeC--CcEEEChhhccC---HHHHHHHcCCCCcch
Confidence 34578889999999999999664 3433 2222221 1444 455999999998863
No 163
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=90.70 E-value=0.054 Score=58.20 Aligned_cols=58 Identities=24% Similarity=0.378 Sum_probs=37.8
Q ss_pred ccccccccccCCCCcccCCCCccc---c--cccCCceEEccC----CCCHHHHHHHHHcCCccceecc
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEVFK---I--EEDFGRARVYNQ----CGINEFVQQAIESCPVDCIHRT 213 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~F~---i--edd~G~a~vv~q----~g~~E~v~eAv~~CPv~cI~~~ 213 (340)
.+..|...||.|+.|+.+|.++-. + ... |....+.. .-+++.+-+||+.|||+||.-.
T Consensus 139 ~i~~~~~rCI~C~rCvr~c~ev~g~~~l~~~~r-g~~~~i~~~~~~~~~~~~~G~cv~~CPvgAl~~k 205 (687)
T PRK09130 139 LVKTVMTRCIHCTRCVRFATEVAGVPELGAIGR-GEDMEITTYLEQALTSELSGNVIDLCPVGALTSK 205 (687)
T ss_pred cEEEecccCCcccHHHHHHHhhcCCceEEeeec-CCCCEEccCCCCCccccccccHHhhCCCcccccc
Confidence 356788999999999999965522 2 222 22222211 1124567889999999998744
No 164
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=90.68 E-value=0.047 Score=59.61 Aligned_cols=57 Identities=19% Similarity=0.461 Sum_probs=36.3
Q ss_pred ccccccccccCCCCcccCCCCcc-----cccccCCceEEccC----CCCHHHHHHHHHcCCccceec
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEVF-----KIEEDFGRARVYNQ----CGINEFVQQAIESCPVDCIHR 212 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~F-----~iedd~G~a~vv~q----~g~~E~v~eAv~~CPv~cI~~ 212 (340)
.+..|...||-|+.|+.+|.++- .+... |....+.. .-+++.+-+||+.|||+||.-
T Consensus 144 ~i~~d~~rCI~C~rCvr~c~ev~g~~~l~~~~r-g~~~~i~~~~~~~~~~~~cG~cv~vCP~GAl~~ 209 (797)
T PRK07860 144 QVLLDRERCVLCARCTRFSDQIAGDPFIDLQER-GALQQVGIYEGEPFQSYFSGNTVQICPVGALTG 209 (797)
T ss_pred ceeecccccccCcHHHHHHHhhcCCcEEEeeec-CCCCEEecCCCCCcCccccCCchhhCCcccccc
Confidence 45678999999999999996542 22222 32222221 112245677999999999873
No 165
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=90.56 E-value=0.14 Score=57.80 Aligned_cols=53 Identities=36% Similarity=0.777 Sum_probs=41.9
Q ss_pred CCCccccccccccCCCCccc--CCCCcccccccCCceEEccC--CCCHHHHHHHHH-cCCc
Q 019486 152 PKDHVFVDEFSCIGCKNCNN--VAPEVFKIEEDFGRARVYNQ--CGINEFVQQAIE-SCPV 207 (340)
Q Consensus 152 p~~~vfvDe~~CiGCg~C~~--v~P~~F~iedd~G~a~vv~q--~g~~E~v~eAv~-~CPv 207 (340)
+...++|++..|.|||.|.. -||-+.-.+.+||..+.++| |..|-. |+. .||.
T Consensus 648 p~~r~~In~~vCeGCgdC~~~snC~ai~p~et~~grK~~Idqs~Cn~d~s---C~~G~CPs 705 (1186)
T PRK13029 648 PARRVFINELVCEGCGDCSVQSNCLAVQPVETEFGRKRKINQSSCNKDFS---CVKGFCPS 705 (1186)
T ss_pred CCccEEEcccccCCchhhhhccCCceeeeccccCCccEEECHhHCCCccc---cccCCCCC
Confidence 34588999999999999965 67777767778898788887 655555 787 8997
No 166
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=90.18 E-value=0.43 Score=46.57 Aligned_cols=59 Identities=20% Similarity=0.318 Sum_probs=40.2
Q ss_pred CccccccccccCCC--CcccCCCCcccc-cccCCceEEccC-CCCHHHHHHHHHcCCccceecccc
Q 019486 154 DHVFVDEFSCIGCK--NCNNVAPEVFKI-EEDFGRARVYNQ-CGINEFVQQAIESCPVDCIHRTSA 215 (340)
Q Consensus 154 ~~vfvDe~~CiGCg--~C~~v~P~~F~i-edd~G~a~vv~q-~g~~E~v~eAv~~CPv~cI~~~~~ 215 (340)
..++.....|..|. .|..+||...+. .++.|...+... +.+ +..|+..||.+||.+...
T Consensus 122 ~~~~y~p~~C~hC~nP~Cv~aCPtgAI~k~eedGiV~ID~ekCiG---Cg~Cv~ACPygAi~~n~~ 184 (321)
T TIGR03478 122 NYYFYLPRICNHCTNPACLAACPTGAIYKREEDGIVLVDQERCKG---YRYCVEACPYKKVYFNPQ 184 (321)
T ss_pred ceEEEecccCCCCCCccchhhCCcCcEEEecCCCeEEECHHHCcc---hHHHHHhCCCCCcEecCC
Confidence 34455678899999 799999987653 333254333222 444 455999999999997654
No 167
>PRK07118 ferredoxin; Validated
Probab=90.14 E-value=0.18 Score=48.35 Aligned_cols=51 Identities=22% Similarity=0.436 Sum_probs=36.4
Q ss_pred ccccCCCCcccCCCCcccccccCCceEEccC-CCCHHHHHHHHHcCCccceecccc
Q 019486 161 FSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ-CGINEFVQQAIESCPVDCIHRTSA 215 (340)
Q Consensus 161 ~~CiGCg~C~~v~P~~F~iedd~G~a~vv~q-~g~~E~v~eAv~~CPv~cI~~~~~ 215 (340)
+.|+||+.|..+||...+.-.+ |...+-.. +..+. .++..||.++|.+.+.
T Consensus 139 ~~CigCg~C~~aCp~~AI~~~~-g~~~id~~~C~~Cg---~Cv~aCP~~ai~~~~~ 190 (280)
T PRK07118 139 YGCLGLGSCVAACPFDAIHIEN-GLPVVDEDKCTGCG---ACVKACPRNVIELIPK 190 (280)
T ss_pred CCCcChhHHHHhCCccCeEccC-CeEEEChhhCcChh---HHHHhcCccceeeecc
Confidence 5799999999999977543333 54444322 55554 4999999999998754
No 168
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=90.05 E-value=0.16 Score=53.46 Aligned_cols=55 Identities=27% Similarity=0.533 Sum_probs=39.9
Q ss_pred ccccccccccCCCCcc--cCCCCcccccccCCceEEccC--CCCHHHHHHHHHcCCccceeccc
Q 019486 155 HVFVDEFSCIGCKNCN--NVAPEVFKIEEDFGRARVYNQ--CGINEFVQQAIESCPVDCIHRTS 214 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~--~v~P~~F~iedd~G~a~vv~q--~g~~E~v~eAv~~CPv~cI~~~~ 214 (340)
..+||+..|.||+.|+ ..||-.+..+. + ....+++ |-.|-. |++.||.++|.-..
T Consensus 571 ~~~Vd~~~CtGC~~C~~~~~Cpsi~~~~~-~-~k~~id~~~C~GCg~---C~~iCP~~a~~~~~ 629 (640)
T COG4231 571 KYFVDEEKCTGCGDCIVLSGCPSIEPDPT-F-KKARIDPSSCNGCGS---CVEVCPSFAIKEGG 629 (640)
T ss_pred CceechhhcCCcHHHHhhcCCceEeecCC-C-Cceeecccccccchh---hhhcCchhheeccc
Confidence 3789999999999997 46777766554 3 4445555 555555 77779999998543
No 169
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=89.88 E-value=0.089 Score=49.78 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=33.6
Q ss_pred ccccCCCCcccCCCCccc-cccc-----CCceEEccCCCCHHHHH--HHHHcCCccceeccc
Q 019486 161 FSCIGCKNCNNVAPEVFK-IEED-----FGRARVYNQCGINEFVQ--QAIESCPVDCIHRTS 214 (340)
Q Consensus 161 ~~CiGCg~C~~v~P~~F~-iedd-----~G~a~vv~q~g~~E~v~--eAv~~CPv~cI~~~~ 214 (340)
..|++|+.|..+||.... +... .|...+......+..+. .|+..||++||.+..
T Consensus 59 ~~Ci~Cg~Cv~aCP~~aI~~~~~~~~~~~g~p~~~~~~~~C~~C~~~~Cv~aCPtgAL~~~~ 120 (254)
T PRK09476 59 SACIRCGLCVQACPYDTLKLATLASGLSAGTPYFVARDIPCEMCEDIPCVKACPSGALDREL 120 (254)
T ss_pred hhCcCchHHHHhCCccccCccccccccccCCceeeecCCcCcCCCCCchhhccCccceEeec
Confidence 689999999999996543 3211 12222222223344444 499999999998743
No 170
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=89.24 E-value=0.2 Score=56.64 Aligned_cols=52 Identities=33% Similarity=0.700 Sum_probs=40.9
Q ss_pred CCccccccccccCCCCccc--CCCCcccccccCCceEEccC--CCCHHHHHHHHH-cCCc
Q 019486 153 KDHVFVDEFSCIGCKNCNN--VAPEVFKIEEDFGRARVYNQ--CGINEFVQQAIE-SCPV 207 (340)
Q Consensus 153 ~~~vfvDe~~CiGCg~C~~--v~P~~F~iedd~G~a~vv~q--~g~~E~v~eAv~-~CPv 207 (340)
...++|++..|.|||.|.. -||-+--.+.+||..+.++| |..|-. |+. .||.
T Consensus 635 ~~r~~In~~vCegCgdC~~~s~C~ai~p~~t~~grK~~Idqs~Cn~d~s---C~~G~CPs 691 (1165)
T PRK09193 635 AKRVFINEAVCEGCGDCSVKSNCLSVEPVETEFGRKRRIDQSSCNKDFS---CLKGFCPS 691 (1165)
T ss_pred CceEEEcccccCCchhhhhccCCcceeeccccCCccEEECHhHCCCccc---cccCCCCC
Confidence 3478999999999999965 67777667777898777887 655545 777 8996
No 171
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=89.14 E-value=0.12 Score=52.54 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=37.5
Q ss_pred ccccccccccCCCCcccCCCCccc-ccccCCceEEccCCCCHH-HHH-----HHHHcCCccceecc
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEVFK-IEEDFGRARVYNQCGINE-FVQ-----QAIESCPVDCIHRT 213 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~F~-iedd~G~a~vv~q~g~~E-~v~-----eAv~~CPv~cI~~~ 213 (340)
.+.+|...|+||+.|..+||.... ++.+.+ ++..|.-|- .+. .|+..||..++.+.
T Consensus 208 iV~ID~dkCiGCg~CV~ACPygAI~~n~~~g---~~~KCd~C~~Rie~G~pPaCVeaCP~~Ar~fG 270 (492)
T TIGR01660 208 IVLIDQDKCRGWRMCISGCPYKKIYFNWKTG---KSEKCIFCYPRIEAGQPTVCSETCVGRIRYLG 270 (492)
T ss_pred eEEEehhhccChHHHHHhCCCCCcEecCCCC---ccccCCCChhHHhCCCCCcchhhcChhhhhhh
Confidence 346799999999999999997653 233223 233444442 221 49999999997654
No 172
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=88.52 E-value=0.35 Score=54.04 Aligned_cols=56 Identities=14% Similarity=0.375 Sum_probs=36.3
Q ss_pred ccccccccCC----CCcccCCCCcccc--c-c----cCCceEEccCCCCHHHHHHHHHcCCccceecccc
Q 019486 157 FVDEFSCIGC----KNCNNVAPEVFKI--E-E----DFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (340)
Q Consensus 157 fvDe~~CiGC----g~C~~v~P~~F~i--e-d----d~G~a~vv~q~g~~E~v~eAv~~CPv~cI~~~~~ 215 (340)
-.+...|.+| +.|..+||....+ + . .++...+ . +.|..+-.|+..||+++-...+.
T Consensus 882 ~~~~~rC~~C~~~C~~C~~vCP~~A~~~i~~~g~~~~~~~~~~-~--~~C~~CG~C~~~CP~~~~py~dk 948 (1019)
T PRK09853 882 AQEAARCLECNYVCEKCVDVCPNRANVSIAVPGFQNRFQIVHL-D--AMCNECGNCAQFCPWNGKPYKDK 948 (1019)
T ss_pred cccccccCCcccccchhhhhCCcccccccccCCcccCCceEEc-C--ccCccccchhhhCCCCCCccccc
Confidence 4567899999 9999999987632 2 1 1222222 2 33334445999999999665544
No 173
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=88.23 E-value=0.25 Score=55.93 Aligned_cols=57 Identities=28% Similarity=0.607 Sum_probs=42.3
Q ss_pred CCccccccccccCCCCccc--CCCCcccccccCCceEEccC--CCCHHHHHHHHH-cCCccceecc
Q 019486 153 KDHVFVDEFSCIGCKNCNN--VAPEVFKIEEDFGRARVYNQ--CGINEFVQQAIE-SCPVDCIHRT 213 (340)
Q Consensus 153 ~~~vfvDe~~CiGCg~C~~--v~P~~F~iedd~G~a~vv~q--~g~~E~v~eAv~-~CPv~cI~~~ 213 (340)
...++|++..|.|||.|.. -||-+--.+.+||..+.+++ |..|-. |+. .||. .++++
T Consensus 621 ~~~~~In~~vCegCg~C~~~s~C~ai~~~~t~~grK~~Id~s~Cn~~~~---C~~G~CPs-fvtv~ 682 (1159)
T PRK13030 621 DRRLFINEAVCEGCGDCGVQSNCLSVEPVETPFGRKRRIDQSSCNKDFS---CVNGFCPS-FVTVE 682 (1159)
T ss_pred CeeEEEcccccCCchhhhhccCCcceeeccccCCccEEECHHHCCCccc---cccCCCCC-CeEec
Confidence 3478999999999999965 57776666777888777877 665555 777 8995 44443
No 174
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=88.13 E-value=0.27 Score=50.59 Aligned_cols=54 Identities=24% Similarity=0.364 Sum_probs=37.0
Q ss_pred ccccccccccCCCCcccCCCCcccccccCCceEEccC--CCCHHHHHHHHHcCCccceeccccc
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ--CGINEFVQQAIESCPVDCIHRTSAQ 216 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~F~iedd~G~a~vv~q--~g~~E~v~eAv~~CPv~cI~~~~~~ 216 (340)
...+|++.|+||+.|.. ||-...-.+ . .++.. |-.|.. |...||++||.+....
T Consensus 555 ~a~vde~~C~gC~~C~~-Cpf~ais~~--k--a~v~~~~C~gCG~---C~~aCp~gai~~~~f~ 610 (622)
T COG1148 555 VATVDEDKCTGCGICAE-CPFGAISVD--K--AEVNPLRCKGCGI---CSAACPSGAIDLAGFS 610 (622)
T ss_pred ccccchhhhcCCcceee-CCCCceecc--c--cccChhhhCcccc---hhhhCCcccchhcccC
Confidence 34679999999999999 997764222 1 22222 333333 8899999999976543
No 175
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=87.94 E-value=0.57 Score=44.03 Aligned_cols=53 Identities=25% Similarity=0.417 Sum_probs=36.7
Q ss_pred cccccCCCC--cccCCCCcccccccCCceEEccC-CCCHHHHHHHHHcCCccceecccc
Q 019486 160 EFSCIGCKN--CNNVAPEVFKIEEDFGRARVYNQ-CGINEFVQQAIESCPVDCIHRTSA 215 (340)
Q Consensus 160 e~~CiGCg~--C~~v~P~~F~iedd~G~a~vv~q-~g~~E~v~eAv~~CPv~cI~~~~~ 215 (340)
...|..|.. |..+||......++.|...+... +.++ ..|+..||.++|.+...
T Consensus 97 ~~~C~~C~~p~Cv~~CP~~Ai~~~~~G~v~id~~~CigC---~~Cv~aCP~~Ai~~~~~ 152 (244)
T PRK14993 97 PRLCNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGC---AYCVQACPYDARFINHE 152 (244)
T ss_pred chhcCCcCCccCccccCCCCEEECCCCCEEEcHHHCCCH---HHHHHhcCCCCCEEeCC
Confidence 568999997 99999977643333254333222 5444 44999999999998654
No 176
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=87.54 E-value=1.8 Score=46.88 Aligned_cols=52 Identities=17% Similarity=0.324 Sum_probs=32.5
Q ss_pred cccccccCCCCcccCCCCccccccc-----CCce-EEccCCCCHHHHHHHHHcCCccc
Q 019486 158 VDEFSCIGCKNCNNVAPEVFKIEED-----FGRA-RVYNQCGINEFVQQAIESCPVDC 209 (340)
Q Consensus 158 vDe~~CiGCg~C~~v~P~~F~iedd-----~G~a-~vv~q~g~~E~v~eAv~~CPv~c 209 (340)
.....|++|+.|..+||..+.+.+. .|.. ........|-.+..|++.||.++
T Consensus 362 ~~~~kCI~CG~Cv~aCP~~l~i~e~i~~~~~G~~~~l~~~~~~Ct~CG~C~evCP~gI 419 (731)
T cd01916 362 ELAAKCTDCGWCTRACPNSLRIKEAMEAAKEGDFSGLADLFDQCVGCGRCEQECPKEI 419 (731)
T ss_pred HhhhcCCCCCcccccCCCCCcHHHHHHHHhcCChhhhhhhHhhhhhhhHHhhhCCCCC
Confidence 3456799999999999987653211 0111 11111234456677999999976
No 177
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=87.03 E-value=0.62 Score=44.82 Aligned_cols=55 Identities=18% Similarity=0.358 Sum_probs=36.8
Q ss_pred cccccccCCCC--cccCCCC-cccccccCCceEEccC-CCCHHHHHHHHHcCCccceecccc
Q 019486 158 VDEFSCIGCKN--CNNVAPE-VFKIEEDFGRARVYNQ-CGINEFVQQAIESCPVDCIHRTSA 215 (340)
Q Consensus 158 vDe~~CiGCg~--C~~v~P~-~F~iedd~G~a~vv~q-~g~~E~v~eAv~~CPv~cI~~~~~ 215 (340)
.....|..|+. |..+||. ......+.|...+..+ +.++. .|+..||.++|.+...
T Consensus 88 ~~~~~C~hC~~p~Cv~aCP~~gA~~~~~~G~V~id~dkCigC~---~Cv~aCP~~a~~~~~~ 146 (283)
T TIGR01582 88 IRKDGCMHCREPGCLKACPAPGAIIQYQNGIVDFDHSKCIGCG---YCIVGCPFNIPRYDKV 146 (283)
T ss_pred ECCccCCCCCCccccCCCCcCCeEEEcCCCcEEEeHHHCCcch---HHHhhCCCCCcEEcCC
Confidence 45566999998 9999996 4333333364333222 44444 4999999999998654
No 178
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=86.09 E-value=0.54 Score=25.85 Aligned_cols=15 Identities=47% Similarity=1.158 Sum_probs=13.2
Q ss_pred ccccCCCCcccCCCC
Q 019486 161 FSCIGCKNCNNVAPE 175 (340)
Q Consensus 161 ~~CiGCg~C~~v~P~ 175 (340)
..|++|+.|..+||.
T Consensus 2 ~~C~~C~~C~~~Cp~ 16 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPT 16 (17)
T ss_dssp CCCTTSSSSTTTSTT
T ss_pred CcCCCCchHHhhccC
Confidence 469999999999985
No 179
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=85.78 E-value=0.78 Score=42.51 Aligned_cols=55 Identities=27% Similarity=0.390 Sum_probs=37.4
Q ss_pred ccccccccCCCC--cccCCCCcccc-cccCCceEEcc-CCCCHHHHHHHHHcCCccceeccc
Q 019486 157 FVDEFSCIGCKN--CNNVAPEVFKI-EEDFGRARVYN-QCGINEFVQQAIESCPVDCIHRTS 214 (340)
Q Consensus 157 fvDe~~CiGCg~--C~~v~P~~F~i-edd~G~a~vv~-q~g~~E~v~eAv~~CPv~cI~~~~ 214 (340)
..+...|..|+. |..+||...+. +.+.|...+.. .+..+ ..++..||.++|.+.+
T Consensus 88 ~~~~~~C~~C~~~~Cv~~CP~gAi~~~~~~g~v~id~~~C~~C---~~C~~aCP~~A~~~~~ 146 (225)
T TIGR03149 88 RFFRKSCQHCDNAPCVAVCPTGASFKDEETGIVDVHKDLCVGC---QYCIAACPYRVRFIHP 146 (225)
T ss_pred EECchhccCCcCcChHhhCCCCcEEEeCCCCeEEechhhCCcc---hHHHHhCCCCCcEecC
Confidence 346778999996 99999988654 33345433221 24444 4599999999997653
No 180
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=83.63 E-value=0.24 Score=45.56 Aligned_cols=52 Identities=13% Similarity=0.318 Sum_probs=31.5
Q ss_pred ccccCCCCcccCCCCccc-cccc-----CCceEEccCCCCHHHHH--HHHHcCCccceec
Q 019486 161 FSCIGCKNCNNVAPEVFK-IEED-----FGRARVYNQCGINEFVQ--QAIESCPVDCIHR 212 (340)
Q Consensus 161 ~~CiGCg~C~~v~P~~F~-iedd-----~G~a~vv~q~g~~E~v~--eAv~~CPv~cI~~ 212 (340)
..|++|+.|..+||.... +... .|...+....+.+..+. .++..||+++|..
T Consensus 53 ~~Ci~Cg~Cv~aCP~~ai~~~~~~~~~~~g~p~~~~~~~~C~~C~d~~Cv~~CP~~Ai~~ 112 (213)
T TIGR00397 53 AACVRCGLCVEACPYDILSLASWSDPAPLGTPFFTPREVPCRMCKDIPCARACPTGALDP 112 (213)
T ss_pred ccccchhHHHHhCCcccccccccccccccCCccccccCCcCCCCCCchHHhHcCHhhhch
Confidence 689999999999997642 3211 12111111122233333 4899999999974
No 181
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=83.46 E-value=0.95 Score=33.05 Aligned_cols=21 Identities=38% Similarity=0.649 Sum_probs=13.9
Q ss_pred ccccccccCCCCcccCCCC-cc
Q 019486 157 FVDEFSCIGCKNCNNVAPE-VF 177 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~-~F 177 (340)
.++.+.|+||+.|..+||. ..
T Consensus 35 ~v~~~~C~GCg~C~~~CPv~~A 56 (59)
T PF14697_consen 35 PVNPDKCIGCGLCVKVCPVKDA 56 (59)
T ss_dssp ECE-TT--S-SCCCCCSSSTTS
T ss_pred EeccccCcCcCcccccCCCccC
Confidence 4667899999999999994 54
No 182
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=83.17 E-value=0.96 Score=41.63 Aligned_cols=57 Identities=19% Similarity=0.371 Sum_probs=34.5
Q ss_pred ccccccccc-----CCCCcccCCCCc---cccccc------CCceEEccC-CCCHHHHHHHHHcCCcc--ceecccc
Q 019486 156 VFVDEFSCI-----GCKNCNNVAPEV---FKIEED------FGRARVYNQ-CGINEFVQQAIESCPVD--CIHRTSA 215 (340)
Q Consensus 156 vfvDe~~Ci-----GCg~C~~v~P~~---F~iedd------~G~a~vv~q-~g~~E~v~eAv~~CPv~--cI~~~~~ 215 (340)
+.+|...|+ +|+.|..+||.. ..++.. +....+-.+ +..+. .|+..||+. ||.+.+.
T Consensus 126 v~id~~~C~~~~g~~C~~C~~~CP~~~~AI~~~~~~~~~~~~~~p~Vd~~~C~gCG---~C~~~CP~~~~AI~v~~~ 199 (213)
T TIGR00397 126 VLVGHETCLNYKGLNCSICVRVCPIRGEAISLKPIENERGRLQIPTVDSAKCTGCG---TCEKHCVLSEAAIRVLPR 199 (213)
T ss_pred EEECCCCcccCCCCCcccchhhCCCCcceEEEecccccCCcccceEEecccCCCcc---hhhHhCCCCCCeEEEeeh
Confidence 346778887 999999999962 223211 011222111 44443 499999987 7776543
No 183
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=83.13 E-value=0.58 Score=44.28 Aligned_cols=55 Identities=22% Similarity=0.517 Sum_probs=35.1
Q ss_pred cccccccc-----CCCCcccCCCC---ccccccc----CCce----EEcc--CCCCHHHHHHHHHcCCcc--ceeccc
Q 019486 157 FVDEFSCI-----GCKNCNNVAPE---VFKIEED----FGRA----RVYN--QCGINEFVQQAIESCPVD--CIHRTS 214 (340)
Q Consensus 157 fvDe~~Ci-----GCg~C~~v~P~---~F~iedd----~G~a----~vv~--q~g~~E~v~eAv~~CPv~--cI~~~~ 214 (340)
.+|...|+ +|+.|..+||. ...++.. .|.. -++. .+.++. .|+..||++ +|.+..
T Consensus 133 ~id~~~Ci~~~~~~C~~C~~~CP~~~~AI~~~~~~~~r~g~~~~~~p~Id~d~C~gCG---~C~~aCP~~~~AI~v~p 207 (254)
T PRK09476 133 LVDQENCLNFQGLRCDVCYRVCPLIDKAITLELERNERTGKHAFFLPTVHSDACTGCG---KCEKACVLEKAAIKVLP 207 (254)
T ss_pred ecchhhccccCCCchHHHhhhCCCccCeEEEEcccccccccccccceEEeHHHCcCcC---hhhHhcCCCcceEEEeh
Confidence 47888998 89999999994 2333321 1211 1222 244444 499999998 888643
No 184
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=83.01 E-value=0.78 Score=46.73 Aligned_cols=52 Identities=27% Similarity=0.586 Sum_probs=32.6
Q ss_pred ccccccccCCCCcccCCCCccccccc-CC----ce--EEc----------c-CCCCHHHHHHHHHcCCcc
Q 019486 157 FVDEFSCIGCKNCNNVAPEVFKIEED-FG----RA--RVY----------N-QCGINEFVQQAIESCPVD 208 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~F~iedd-~G----~a--~vv----------~-q~g~~E~v~eAv~~CPv~ 208 (340)
+.+...|+.||.|..+||....++.. || .. .+. . ....|..+..|.+.||++
T Consensus 289 ~~e~~~CIrCG~C~~~CPvy~~~g~~~~~~~~~Gp~G~v~~~~~~g~~~~~~~~~~C~~Cg~C~~vCP~g 358 (432)
T TIGR00273 289 FREVLACIRCGACQNECPVYRHIGGHWYGSIYPGPIGAVWSPLLGGYTDYKHLPYLSSLCGACREVCPVK 358 (432)
T ss_pred hhhHhhCCCCCCccccCcchhccCccccccccCChHHHHHHHHhcccccccccCccchhhhhhhccCCCC
Confidence 34577899999999999976544321 11 10 000 1 123455677899999985
No 185
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=81.80 E-value=0.42 Score=46.97 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=33.8
Q ss_pred CccccccccccCCCCcccCCCCcc-cccccCCce-----EEc---cCCCCHHHHHHHHHcCCccce
Q 019486 154 DHVFVDEFSCIGCKNCNNVAPEVF-KIEEDFGRA-----RVY---NQCGINEFVQQAIESCPVDCI 210 (340)
Q Consensus 154 ~~vfvDe~~CiGCg~C~~v~P~~F-~iedd~G~a-----~vv---~q~g~~E~v~eAv~~CPv~cI 210 (340)
....++...|++|+.|..+||... .+.++.... ..+ .....|..+..|+..||...+
T Consensus 5 ~~~vi~~~~C~gCg~C~~~CP~~aI~~~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~C~~vCP~~~~ 70 (341)
T PRK09326 5 IAEVIEYDVCTACGACEAVCPIGAITVDKKAEIRDPNDLELYEKGAAPNVCEGCLTCSRICPVVDG 70 (341)
T ss_pred cccEECcccCcChHHHHHhCCHhhhecccCcccccccchhhhccCCCcCcCcCcCchhhhCCCCcc
Confidence 344678889999999999999653 343321110 000 011233344559999998654
No 186
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=80.87 E-value=1.1 Score=48.57 Aligned_cols=53 Identities=17% Similarity=0.399 Sum_probs=33.4
Q ss_pred cccccccccCCCCcccCCCCccccccc-----CCc-eEEccCCCCHHHHHHHHHcCCcc
Q 019486 156 VFVDEFSCIGCKNCNNVAPEVFKIEED-----FGR-ARVYNQCGINEFVQQAIESCPVD 208 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~~F~iedd-----~G~-a~vv~q~g~~E~v~eAv~~CPv~ 208 (340)
+......|++|+.|..+||..+.+.+. .|. ..+......|..+..|++.||.+
T Consensus 394 Ll~~~~kCI~CG~Cv~aCP~~l~i~e~i~~a~~G~l~~l~~~~d~C~~CG~C~evCP~g 452 (784)
T TIGR00314 394 LMELANKCTQCGNCVRTCPNSLRVDEAMAHAQKGDLSKLEQLEEQCYACGRCEQACPKN 452 (784)
T ss_pred HhhhcccCCCcccchhhCCCCcchHHHHHHHhcCCccccccCHhhhhhhhHHhccCCCC
Confidence 344567899999999999987543211 121 11111123455677799999986
No 187
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=79.70 E-value=1.6 Score=38.02 Aligned_cols=55 Identities=18% Similarity=0.278 Sum_probs=36.6
Q ss_pred cccccccCCC--CcccCCCCcccccc-cCCceEEccC-CCCHHHHHHHHHcCCccceecccc
Q 019486 158 VDEFSCIGCK--NCNNVAPEVFKIEE-DFGRARVYNQ-CGINEFVQQAIESCPVDCIHRTSA 215 (340)
Q Consensus 158 vDe~~CiGCg--~C~~v~P~~F~ied-d~G~a~vv~q-~g~~E~v~eAv~~CPv~cI~~~~~ 215 (340)
.....|++|+ .|..+||....... ..|...+... +.++ ..++..||.++|.+...
T Consensus 59 ~~~~~C~~C~~~~C~~~CP~~ai~~~~~~~~~~i~~~~C~~C---~~C~~aCP~~ai~~~~~ 117 (161)
T TIGR02951 59 YISISCNHCADPACVKNCPTGAMYKREEDGLVLVDQDKCIGC---RYCVWACPYGAPQYDPQ 117 (161)
T ss_pred EcCccCCCcCCcchHHhCCCCCEEeecCCCcEEECHHhCCCc---hHHHhhCCCCCcEEcCC
Confidence 3467899999 89999997754322 2243333222 4444 44999999999998654
No 188
>PRK09898 hypothetical protein; Provisional
Probab=79.61 E-value=1.6 Score=39.77 Aligned_cols=54 Identities=22% Similarity=0.292 Sum_probs=36.5
Q ss_pred ccccccccCCC--CcccCCCCccc-ccccCCceEEccC-CCCHHHHHHHHHcCCccceecc
Q 019486 157 FVDEFSCIGCK--NCNNVAPEVFK-IEEDFGRARVYNQ-CGINEFVQQAIESCPVDCIHRT 213 (340)
Q Consensus 157 fvDe~~CiGCg--~C~~v~P~~F~-iedd~G~a~vv~q-~g~~E~v~eAv~~CPv~cI~~~ 213 (340)
.++...|..|+ .|..+||.... ...++|...+... +..+ ..++..||.++|.+.
T Consensus 117 ~~~~~~C~~C~~~~C~~~CP~gAi~~~~~~g~v~vd~~~CigC---~~C~~aCP~~ai~~~ 174 (208)
T PRK09898 117 NYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGC---SACTTACPWMMATVN 174 (208)
T ss_pred EEeCccCCCccCcchhhhCCcceEEeeccCCeEEeccccCCCc---CcccccCCCCCCEec
Confidence 45677899998 89999997753 4444453333222 4334 448999999999865
No 189
>PF13446 RPT: A repeated domain in UCH-protein
Probab=77.16 E-value=5 Score=29.24 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=24.7
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHH
Q 019486 70 DDYYAVLGLLPDATPEQIKKAYYNCMK 96 (340)
Q Consensus 70 ~d~Y~vLgv~~~as~~eIk~AYr~la~ 96 (340)
.+.|++|||+++.+.+.|-.+|+....
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999998877
No 190
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=76.39 E-value=2.8 Score=40.89 Aligned_cols=55 Identities=22% Similarity=0.193 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCC----ChHHHHHHHHHHHHHHHhcChhhhhhhccc
Q 019486 81 DATPEQIKKAYYNCMKACHPDLSGD----DPETTNFCMFINEVYAVLSDPVQRMVYDEI 135 (340)
Q Consensus 81 ~as~~eIk~AYr~la~~~HPD~~~~----~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~ 135 (340)
.++..+|..+|+...+..||++... .....+.|+.|.+||.||++...|..+|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 3577899999999999999998641 124677899999999999986666566654
No 191
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=75.82 E-value=1.8 Score=44.58 Aligned_cols=56 Identities=30% Similarity=0.586 Sum_probs=33.9
Q ss_pred cccccccccC--C-CCcccCCCCc------ccccccCCceEEccC--CCCHHHHHHHHHcCCccceecccc
Q 019486 156 VFVDEFSCIG--C-KNCNNVAPEV------FKIEEDFGRARVYNQ--CGINEFVQQAIESCPVDCIHRTSA 215 (340)
Q Consensus 156 vfvDe~~CiG--C-g~C~~v~P~~------F~iedd~G~a~vv~q--~g~~E~v~eAv~~CPv~cI~~~~~ 215 (340)
..+|.+.|.. | -.|...||.+ -.++++.|.. ++.+ |-+|.- |+.-||-+||.++.-
T Consensus 6 Avvd~D~C~PkkC~~eC~~yCP~vrtg~~~I~i~~~~gkp-vIsE~lCiGCGI---CvkkCPF~AI~IvnL 72 (591)
T COG1245 6 AVVDYDRCQPKKCGYECIKYCPVVRTGKETIEIDEDTGKP-VISEELCIGCGI---CVKKCPFDAISIVNL 72 (591)
T ss_pred EEeehhccCccccchhhhhcCCCccCCCeeEEecCCCCCc-eeEhhhhccchh---hhccCCcceEEEecC
Confidence 4567777744 3 3577788765 2344544444 4443 444444 888888888888753
No 192
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=75.74 E-value=1.7 Score=38.61 Aligned_cols=51 Identities=22% Similarity=0.468 Sum_probs=35.0
Q ss_pred cccccCCC--CcccCCCCcccccccCCceEEccC-CCCHHHHHHHHHcCCccceeccc
Q 019486 160 EFSCIGCK--NCNNVAPEVFKIEEDFGRARVYNQ-CGINEFVQQAIESCPVDCIHRTS 214 (340)
Q Consensus 160 e~~CiGCg--~C~~v~P~~F~iedd~G~a~vv~q-~g~~E~v~eAv~~CPv~cI~~~~ 214 (340)
...|+.|+ .|..+||......++ |...+... +.++ ..++..||.++|.+..
T Consensus 55 ~~~C~~C~~~~C~~~Cp~~ai~~~~-~~v~i~~~~C~~C---~~C~~~CP~~ai~~~~ 108 (181)
T PRK10330 55 ATVCRQCEDAPCANVCPNGAISRDK-GFVHVMQERCIGC---KTCVVACPYGAMEVVV 108 (181)
T ss_pred CCcCcCcCCcHHHHHcCcccEEccC-CeEEeChhhCCCc---chhhhhCCccCeEeec
Confidence 35799999 799999987654333 54333222 4444 4599999999998764
No 193
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=75.11 E-value=2 Score=44.45 Aligned_cols=59 Identities=22% Similarity=0.445 Sum_probs=36.2
Q ss_pred ccccccccCCCCcccCCCCccc--ccccCCceEEc----cC----CC--C---HHHHHHHHHcCCccceeccccc
Q 019486 157 FVDEFSCIGCKNCNNVAPEVFK--IEEDFGRARVY----NQ----CG--I---NEFVQQAIESCPVDCIHRTSAQ 216 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~F~--iedd~G~a~vv----~q----~g--~---~E~v~eAv~~CPv~cI~~~~~~ 216 (340)
++| +.|.|||.|..+||.... ++...|..+.+ .| .+ + +-.+..|...||-.+|.+...+
T Consensus 221 yVd-d~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~c~~C~~ac~~~av~~~q~~ 294 (622)
T COG1148 221 YVD-DKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIECGLCEKACPNEAVDLNQEP 294 (622)
T ss_pred ccc-ccccccccccccCCcccCcccccccccceeeeccchhhcccccccChhhhccchhhhhcCCccccccCCCC
Confidence 567 899999999999987421 22222332222 11 11 1 1234568899999998886544
No 194
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=74.49 E-value=1.1 Score=39.65 Aligned_cols=30 Identities=27% Similarity=0.492 Sum_probs=24.0
Q ss_pred ccccccccccCCCCcccCCCCccccc-ccCC
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEVFKIE-EDFG 184 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~F~ie-dd~G 184 (340)
...+|...||.||.|...||.+.+++ ..|.
T Consensus 144 rYdIDmtkCIyCG~CqEaCPvdaivegpnfE 174 (212)
T KOG3256|consen 144 RYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 174 (212)
T ss_pred eecccceeeeeecchhhhCCccceeccCCce
Confidence 34579999999999999999998764 3443
No 195
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=73.48 E-value=1.3 Score=35.69 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=20.6
Q ss_pred CccccccccccCCCCcccCCCCcc
Q 019486 154 DHVFVDEFSCIGCKNCNNVAPEVF 177 (340)
Q Consensus 154 ~~vfvDe~~CiGCg~C~~v~P~~F 177 (340)
..+.++...|++||.|..+|+..-
T Consensus 54 G~V~vd~e~CigCg~C~~~C~~~~ 77 (95)
T PRK15449 54 GSVRFDYAGCLECGTCRILGLGSA 77 (95)
T ss_pred CCEEEcCCCCCcchhhhhhcCCCC
Confidence 467889999999999999997664
No 196
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=73.43 E-value=6.6 Score=35.73 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHH-hcC
Q 019486 79 LPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAV-LSD 125 (340)
Q Consensus 79 ~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~v-Lsd 125 (340)
+++|+.|||.+|+.++..+| .+ +++.-..|..||+. |++
T Consensus 1 S~~ASfeEIq~Arn~ll~~y-----~g---d~~~~~~IEaAYD~ILM~ 40 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQY-----AG---DEKSREAIEAAYDAILME 40 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHh-----cC---CHHHHHHHHHHHHHHHHH
Confidence 47899999999999999998 22 24455789999984 544
No 197
>PRK13409 putative ATPase RIL; Provisional
Probab=72.04 E-value=1.6 Score=46.16 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=21.1
Q ss_pred CccccccccccCCCCcccCCCCccc
Q 019486 154 DHVFVDEFSCIGCKNCNNVAPEVFK 178 (340)
Q Consensus 154 ~~vfvDe~~CiGCg~C~~v~P~~F~ 178 (340)
...++.|..|||||.|+.-||-..+
T Consensus 42 ~~~~~~e~~c~~c~~c~~~cp~~a~ 66 (590)
T PRK13409 42 GKPVISEELCIGCGICVKKCPFDAI 66 (590)
T ss_pred CCceeeHhhccccccccccCCcceE
Confidence 3567899999999999999997753
No 198
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=71.92 E-value=2.5 Score=45.14 Aligned_cols=53 Identities=19% Similarity=0.426 Sum_probs=36.4
Q ss_pred ccccccCCCC--cccCCCCcccccccCCceEEccC-CCCHHHHHHHHHcCCccceecccc
Q 019486 159 DEFSCIGCKN--CNNVAPEVFKIEEDFGRARVYNQ-CGINEFVQQAIESCPVDCIHRTSA 215 (340)
Q Consensus 159 De~~CiGCg~--C~~v~P~~F~iedd~G~a~vv~q-~g~~E~v~eAv~~CPv~cI~~~~~ 215 (340)
....|+.|+. |..+||.......+ +...+... |..|. .|+..||.++|.+...
T Consensus 52 ~~~~C~~C~~~~C~~~CP~~ai~~~~-~~~~id~~~C~~C~---~C~~~CP~~ai~~~~~ 107 (654)
T PRK12769 52 SAVTCHHCEDAPCARSCPNGAISHVD-DSIQVNQQKCIGCK---SCVVACPFGTMQIVLT 107 (654)
T ss_pred CCccCCCCCChhHhhhCCccceeccC-CeEEEecccccCcC---hhcccCCccCeeeccc
Confidence 3567999986 99999988654433 33332222 44444 4999999999998643
No 199
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=71.13 E-value=3.2 Score=44.18 Aligned_cols=54 Identities=13% Similarity=0.276 Sum_probs=35.8
Q ss_pred cccccccCCCC--cccCCCCcccccccCCceEEccCCCCHHHHHHHHHcCCccceeccc
Q 019486 158 VDEFSCIGCKN--CNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (340)
Q Consensus 158 vDe~~CiGCg~--C~~v~P~~F~iedd~G~a~vv~q~g~~E~v~eAv~~CPv~cI~~~~ 214 (340)
.+...|..|+. |..+||.....-.+ +. ..+.. ..|..+..|+..||.++|.+..
T Consensus 51 ~~~~~C~~C~~~~C~~~CP~~ai~~~~-~~-v~~d~-~~C~gC~~C~~~CP~~ai~~~~ 106 (639)
T PRK12809 51 ANPVACHHCNNAPCVTACPVNALTFQS-DS-VQLDE-QKCIGCKRCAIACPFGVVEMVD 106 (639)
T ss_pred ccCCCCcCcCChhHHhhCCcCceeccc-cc-eecCh-hhCcchhhHhhhcCCCCEEccC
Confidence 35678999997 99999977544333 32 22222 2223345599999999998764
No 200
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=70.81 E-value=3.9 Score=44.54 Aligned_cols=54 Identities=19% Similarity=0.243 Sum_probs=32.4
Q ss_pred cccccccccCCCCcccCCCCcccccc-----cCCceEEcc-CCCCHHHHHHHHHcCCccc
Q 019486 156 VFVDEFSCIGCKNCNNVAPEVFKIEE-----DFGRARVYN-QCGINEFVQQAIESCPVDC 209 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~~F~ied-----d~G~a~vv~-q~g~~E~v~eAv~~CPv~c 209 (340)
+..+...|++|+.|..+||..+.+.. ..|....+. ..+.|..+..|.+.||.+.
T Consensus 399 l~~eadrCI~CG~Cv~aCP~~l~i~~~I~~a~~G~~~~l~~l~~~Ct~CG~CeeVCPtgI 458 (781)
T PRK00941 399 LKELAKKCTECGWCVRVCPNELPIPEAMEAAAKGDLSKLEDLYDKCIGCGRCEQVCPKNI 458 (781)
T ss_pred HHHhhhhCcCCCCccccCCCCcchhHHHHHHhcCChhhhhhhhhhccchhHHhhhCCCCC
Confidence 33456779999999999998643211 002100001 1234455667999999863
No 201
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=70.43 E-value=3.4 Score=36.72 Aligned_cols=51 Identities=25% Similarity=0.509 Sum_probs=38.0
Q ss_pred ccccCC--CCcccCCCCcccccccCCceEEccC-CCCHHHHHHHHHcCCccceecccc
Q 019486 161 FSCIGC--KNCNNVAPEVFKIEEDFGRARVYNQ-CGINEFVQQAIESCPVDCIHRTSA 215 (340)
Q Consensus 161 ~~CiGC--g~C~~v~P~~F~iedd~G~a~vv~q-~g~~E~v~eAv~~CPv~cI~~~~~ 215 (340)
..|..| ..|..+||...+..++ |...|..+ +-++.+ ++..||.++|.+...
T Consensus 51 v~C~qCedaPC~~vCP~~AI~~~~-~~v~V~~ekCiGC~~---C~~aCPfGai~~~~~ 104 (165)
T COG1142 51 VVCHHCEDAPCAEVCPVGAITRDD-GAVQVDEEKCIGCKL---CVVACPFGAITMVSY 104 (165)
T ss_pred CcCCCCCCcchhhhCchhheeecC-CceEEchhhccCcch---hhhcCCcceEEEEee
Confidence 446665 4689999999987665 66665544 555555 999999999998765
No 202
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=70.29 E-value=10 Score=31.48 Aligned_cols=46 Identities=24% Similarity=0.366 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCChHH----HHHHHHHHHHHHHhcCh
Q 019486 81 DATPEQIKKAYYNCMKACHPDLSGDDPET----TNFCMFINEVYAVLSDP 126 (340)
Q Consensus 81 ~as~~eIk~AYr~la~~~HPD~~~~~~~~----~~~f~~i~~Ay~vLsdp 126 (340)
..+..+++.+.|..-++.|||..+..|+. ++-++.|+.-.+.|..+
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 45677899999999999999988776652 34556666666666543
No 203
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=69.80 E-value=1.6 Score=34.78 Aligned_cols=20 Identities=40% Similarity=0.715 Sum_probs=18.2
Q ss_pred cccccccCCCCcccCCCCcc
Q 019486 158 VDEFSCIGCKNCNNVAPEVF 177 (340)
Q Consensus 158 vDe~~CiGCg~C~~v~P~~F 177 (340)
+|-+.|-|||.|..+||...
T Consensus 63 idYdyCKGCGICa~vCP~ka 82 (91)
T COG1144 63 IDYDYCKGCGICANVCPVKA 82 (91)
T ss_pred eEcccccCceechhhCChhh
Confidence 78889999999999999864
No 204
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=69.66 E-value=1.7 Score=44.72 Aligned_cols=22 Identities=32% Similarity=0.550 Sum_probs=19.5
Q ss_pred ccccccccCCCCcccCCCCccc
Q 019486 157 FVDEFSCIGCKNCNNVAPEVFK 178 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~F~ 178 (340)
++.|..|+|||.|..-||-..+
T Consensus 46 vIsE~lCiGCGICvkkCPF~AI 67 (591)
T COG1245 46 VISEELCIGCGICVKKCPFDAI 67 (591)
T ss_pred eeEhhhhccchhhhccCCcceE
Confidence 6789999999999999997753
No 205
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=67.82 E-value=1.3 Score=23.62 Aligned_cols=13 Identities=46% Similarity=1.260 Sum_probs=7.2
Q ss_pred ccCCCCcccCCCC
Q 019486 163 CIGCKNCNNVAPE 175 (340)
Q Consensus 163 CiGCg~C~~v~P~ 175 (340)
|++|+.|..+||.
T Consensus 1 C~~C~~C~~~Cp~ 13 (15)
T PF12798_consen 1 CTGCGACVEVCPT 13 (15)
T ss_pred CCCchHHHHHhcC
Confidence 4555555555554
No 206
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=67.75 E-value=2.2 Score=45.12 Aligned_cols=28 Identities=32% Similarity=0.591 Sum_probs=23.7
Q ss_pred CccccccccccCCCCcccCCCCcccccc
Q 019486 154 DHVFVDEFSCIGCKNCNNVAPEVFKIEE 181 (340)
Q Consensus 154 ~~vfvDe~~CiGCg~C~~v~P~~F~ied 181 (340)
..+++|...|+||+.|.++||..++-+.
T Consensus 601 ~k~~id~~~C~GCg~C~~iCP~~a~~~~ 628 (640)
T COG4231 601 KKARIDPSSCNGCGSCVEVCPSFAIKEG 628 (640)
T ss_pred CceeecccccccchhhhhcCchhheecc
Confidence 5678899999999999999998776543
No 207
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=67.02 E-value=2 Score=43.66 Aligned_cols=19 Identities=37% Similarity=0.737 Sum_probs=16.2
Q ss_pred cccccccCCCCcccCCCCc
Q 019486 158 VDEFSCIGCKNCNNVAPEV 176 (340)
Q Consensus 158 vDe~~CiGCg~C~~v~P~~ 176 (340)
..+..|++|+.|..+||..
T Consensus 360 ~~~~~Ci~Cg~C~~vCP~~ 378 (435)
T TIGR01945 360 SPEKPCIRCGKCVQVCPMN 378 (435)
T ss_pred ccCCcCcCccchhhhCccc
Confidence 3567999999999999965
No 208
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=66.68 E-value=2.7 Score=31.66 Aligned_cols=21 Identities=38% Similarity=0.860 Sum_probs=17.0
Q ss_pred ccccccCCCCcccCCCCcccc
Q 019486 159 DEFSCIGCKNCNNVAPEVFKI 179 (340)
Q Consensus 159 De~~CiGCg~C~~v~P~~F~i 179 (340)
....|+|||.|..+||..-.|
T Consensus 48 ~~~~CVgCgrCv~~CP~~Idi 68 (69)
T PF13746_consen 48 GEGDCVGCGRCVRVCPAGIDI 68 (69)
T ss_pred CCccCCCcChHhhhcCCCCCc
Confidence 456699999999999986543
No 209
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=66.24 E-value=3.5 Score=33.33 Aligned_cols=55 Identities=18% Similarity=0.394 Sum_probs=33.4
Q ss_pred cccccCCC--CcccCCCCccccc-ccCCceEEccC-CCCHHHHHHHHHcCCccceecccccc
Q 019486 160 EFSCIGCK--NCNNVAPEVFKIE-EDFGRARVYNQ-CGINEFVQQAIESCPVDCIHRTSAQQ 217 (340)
Q Consensus 160 e~~CiGCg--~C~~v~P~~F~ie-dd~G~a~vv~q-~g~~E~v~eAv~~CPv~cI~~~~~~~ 217 (340)
...|..|. .|..+||...+.. ++.|...+-.+ +-++.. ++..||-++|.+.....
T Consensus 6 ~~~C~hC~~ppC~~~CP~~Ai~~~~~~G~V~id~~~CigC~~---C~~aCP~~ai~~~~~~~ 64 (98)
T PF13247_consen 6 PVQCRHCEDPPCVEACPTGAIYKDPEDGIVVIDEDKCIGCGY---CVEACPYGAIRFDPDTG 64 (98)
T ss_dssp EEC---BSS-HHHHHCTTTSEEEETTTS-EEE-TTTCCTHHH---HHHH-TTS-EEEETTTT
T ss_pred CCcCcCcCCCchhhhCCccceEEEcCCCeEEechhhccCchh---hhhhhccCcceeecccc
Confidence 34577776 6899999987654 43576654443 555555 99999999999876543
No 210
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=65.62 E-value=4.1 Score=40.05 Aligned_cols=52 Identities=21% Similarity=0.491 Sum_probs=34.8
Q ss_pred ccccccCCC--CcccCCCCcccccc-cCCceEEccC--CCCHHHHHHHHHcCCccceeccc
Q 019486 159 DEFSCIGCK--NCNNVAPEVFKIEE-DFGRARVYNQ--CGINEFVQQAIESCPVDCIHRTS 214 (340)
Q Consensus 159 De~~CiGCg--~C~~v~P~~F~ied-d~G~a~vv~q--~g~~E~v~eAv~~CPv~cI~~~~ 214 (340)
....|..|+ .|..+||......+ +.|... +.+ +.. +..|+..||.++|.+..
T Consensus 108 ~~~~C~hC~~p~Cv~aCP~gAi~k~~~~g~V~-id~dkCig---Cg~Cv~aCP~gai~~~~ 164 (328)
T PRK10882 108 IKKQCMHCVDPNCVSVCPVSALTKDPKTGIVH-YDKDVCTG---CRYCMVACPFNVPKYDY 164 (328)
T ss_pred ccccCCCcCchhhHhhCCCCCEEecccCCccc-CCHHHcCc---ccHHHHhCCccceeccc
Confidence 345799998 89999998754433 224332 222 443 45599999999998653
No 211
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=64.32 E-value=2.4 Score=40.64 Aligned_cols=18 Identities=33% Similarity=0.617 Sum_probs=15.7
Q ss_pred ccccccCCCCcccCCCCc
Q 019486 159 DEFSCIGCKNCNNVAPEV 176 (340)
Q Consensus 159 De~~CiGCg~C~~v~P~~ 176 (340)
+...||.||.|...||..
T Consensus 150 ~~~~CI~CG~C~~~CP~~ 167 (279)
T PRK12576 150 KFAQCIWCGLCVSACPVV 167 (279)
T ss_pred cchhCcccCcccccCCCc
Confidence 456799999999999975
No 212
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=63.61 E-value=0.36 Score=34.22 Aligned_cols=18 Identities=33% Similarity=0.757 Sum_probs=11.7
Q ss_pred ccccCCCCcccCCCCccc
Q 019486 161 FSCIGCKNCNNVAPEVFK 178 (340)
Q Consensus 161 ~~CiGCg~C~~v~P~~F~ 178 (340)
..|++||.|..+||....
T Consensus 3 ~~Ci~Cg~C~~~CP~~~~ 20 (57)
T PF13183_consen 3 SKCIRCGACTSVCPVYRN 20 (57)
T ss_dssp HC--S-SHHHHCSHHHHH
T ss_pred HHccCccChHHHChhhhc
Confidence 469999999999995433
No 213
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=63.55 E-value=3.7 Score=36.69 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=21.7
Q ss_pred CccccccccccCCCCcccCCCCcccc
Q 019486 154 DHVFVDEFSCIGCKNCNNVAPEVFKI 179 (340)
Q Consensus 154 ~~vfvDe~~CiGCg~C~~v~P~~F~i 179 (340)
..-.+|-..||.||.|..+||.....
T Consensus 88 ~~~~In~grCIfCg~C~e~CPt~Al~ 113 (172)
T COG1143 88 KRPDINLGRCIFCGLCVEVCPTGALV 113 (172)
T ss_pred ccceeccccccccCchhhhCchhhhc
Confidence 34457899999999999999998754
No 214
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=63.21 E-value=1.8 Score=40.49 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=13.7
Q ss_pred ccccCCCCcccCCCCc
Q 019486 161 FSCIGCKNCNNVAPEV 176 (340)
Q Consensus 161 ~~CiGCg~C~~v~P~~ 176 (340)
..||.||.|..+||..
T Consensus 149 ~~CI~Cg~C~saCP~~ 164 (239)
T PRK13552 149 DRCIECGCCVAACGTK 164 (239)
T ss_pred hhccccchhHhhCCCC
Confidence 4599999999999943
No 215
>COG1146 Ferredoxin [Energy production and conversion]
Probab=62.53 E-value=3 Score=30.88 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.2
Q ss_pred CCccccccccccCCCCcccCCCCcc
Q 019486 153 KDHVFVDEFSCIGCKNCNNVAPEVF 177 (340)
Q Consensus 153 ~~~vfvDe~~CiGCg~C~~v~P~~F 177 (340)
...+.++...|++|+.|...||...
T Consensus 33 ~~~~~~~~e~C~~C~~C~~~CP~~a 57 (68)
T COG1146 33 GKPVVARPEECIDCGLCELACPVGA 57 (68)
T ss_pred cceeEeccccCccchhhhhhCCcce
Confidence 3456788899999999999999883
No 216
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=59.46 E-value=3.9 Score=39.87 Aligned_cols=47 Identities=28% Similarity=0.393 Sum_probs=28.3
Q ss_pred ccccccccCCCCcccCCCCcccccccCCceEEccCCCCHHHHHHHHHcCC
Q 019486 157 FVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCP 206 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~F~iedd~G~a~vv~q~g~~E~v~eAv~~CP 206 (340)
.+|+..|.||+.|..+||...+--+..........|-. +-.|+..||
T Consensus 168 ~~~~E~c~gc~~cv~~C~~gAI~~~~~~l~id~~~Ci~---Cg~Ci~~Cp 214 (317)
T COG2221 168 KVDEELCRGCGKCVKVCPTGAITWDGKKLKIDGSKCIG---CGKCIRACP 214 (317)
T ss_pred ccCHHHhchhHhHHHhCCCCceeeccceEEEehhhccC---ccHHhhhCC
Confidence 46888899999999999888753222111111111332 344888898
No 217
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=58.66 E-value=2.1 Score=43.35 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=20.3
Q ss_pred cccccccCCCCcccCCCCcccccccC
Q 019486 158 VDEFSCIGCKNCNNVAPEVFKIEEDF 183 (340)
Q Consensus 158 vDe~~CiGCg~C~~v~P~~F~iedd~ 183 (340)
-+...||.||.|...||..-.++..+
T Consensus 305 re~L~CIRCGaC~n~CPvY~~iGgh~ 330 (459)
T COG1139 305 REALRCIRCGACLNHCPVYRHIGGHA 330 (459)
T ss_pred HHHHHhhcchHhhhcChhhhhccCee
Confidence 34567999999999999876676443
No 218
>PRK13409 putative ATPase RIL; Provisional
Probab=57.85 E-value=4.4 Score=42.90 Aligned_cols=57 Identities=28% Similarity=0.559 Sum_probs=35.5
Q ss_pred cccccccccC--CC-CcccCCCCc------ccccccCCceEEccC-CCCHHHHHHHHHcCCccceecccc
Q 019486 156 VFVDEFSCIG--CK-NCNNVAPEV------FKIEEDFGRARVYNQ-CGINEFVQQAIESCPVDCIHRTSA 215 (340)
Q Consensus 156 vfvDe~~CiG--Cg-~C~~v~P~~------F~iedd~G~a~vv~q-~g~~E~v~eAv~~CPv~cI~~~~~ 215 (340)
.++|.+.|.- |+ .|...||.+ -.++++.+.+.+... |-+|.- ||.-||-+||.++.-
T Consensus 5 ~~~~~~~c~~~~c~~~c~~~cp~~~~~~~~~~~~~~~~~~~~~e~~c~~c~~---c~~~cp~~a~~i~~~ 71 (590)
T PRK13409 5 AVVDYDRCQPKKCNYECIKYCPVVRTGEETIEIDEDDGKPVISEELCIGCGI---CVKKCPFDAISIVNL 71 (590)
T ss_pred EEeeccccCcchhhhhHHhhCCCcccCCeEEEEcCCCCCceeeHhhcccccc---ccccCCcceEEEeeC
Confidence 4567778854 54 488888866 223333243333222 544544 999999999998753
No 219
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=56.98 E-value=3.4 Score=32.11 Aligned_cols=21 Identities=33% Similarity=0.817 Sum_probs=18.2
Q ss_pred ccccccccCCCCcccCCCCcc
Q 019486 157 FVDEFSCIGCKNCNNVAPEVF 177 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~F 177 (340)
.++...|++|+.|..+||...
T Consensus 66 ~i~~~~C~~Cg~C~~~CP~~A 86 (91)
T TIGR02936 66 VANPGNCIGCGACARVCPKKC 86 (91)
T ss_pred ecCCccCcChhhhhhhCCHhH
Confidence 467889999999999999764
No 220
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=55.11 E-value=5.5 Score=39.63 Aligned_cols=16 Identities=38% Similarity=0.773 Sum_probs=14.0
Q ss_pred ccccCCCCcccCCCCc
Q 019486 161 FSCIGCKNCNNVAPEV 176 (340)
Q Consensus 161 ~~CiGCg~C~~v~P~~ 176 (340)
..|+.||.|..+||..
T Consensus 5 ~~Ci~Cg~C~~~Cp~~ 20 (397)
T TIGR03379 5 ESCIKCTVCTVYCPVA 20 (397)
T ss_pred hhCCCCCCCcccCcCc
Confidence 4599999999999965
No 221
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=54.63 E-value=15 Score=39.84 Aligned_cols=21 Identities=33% Similarity=0.860 Sum_probs=17.3
Q ss_pred ccccccCCCCcccCCCCcccc
Q 019486 159 DEFSCIGCKNCNNVAPEVFKI 179 (340)
Q Consensus 159 De~~CiGCg~C~~v~P~~F~i 179 (340)
+.+.|++||.|..+||....+
T Consensus 407 ~~~~CieCG~C~~vCPs~Ipl 427 (695)
T PRK05035 407 NLFDCIECGACAYVCPSNIPL 427 (695)
T ss_pred ChhhccccCcccccCCCCCcH
Confidence 446799999999999987554
No 222
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=53.60 E-value=6.8 Score=38.67 Aligned_cols=15 Identities=7% Similarity=-0.057 Sum_probs=8.7
Q ss_pred ccCCCCcccCCCCcc
Q 019486 163 CIGCKNCNNVAPEVF 177 (340)
Q Consensus 163 CiGCg~C~~v~P~~F 177 (340)
|.+|+.|...||...
T Consensus 183 ~c~~~~Cv~~CP~~A 197 (341)
T TIGR02066 183 VCEIPSVVAACPTGA 197 (341)
T ss_pred hcCCCceEeeCchhh
Confidence 344466666666654
No 223
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=51.42 E-value=5.7 Score=39.39 Aligned_cols=18 Identities=33% Similarity=0.617 Sum_probs=15.0
Q ss_pred cccccCCCCcccCCCCcc
Q 019486 160 EFSCIGCKNCNNVAPEVF 177 (340)
Q Consensus 160 e~~CiGCg~C~~v~P~~F 177 (340)
...|+.||.|..+||..-
T Consensus 6 ~~~Ci~Cg~C~~~CP~~~ 23 (396)
T PRK11168 6 FDSCIKCTVCTTACPVAR 23 (396)
T ss_pred hhhcCCCCCCCccCCCcc
Confidence 346999999999999753
No 224
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=49.43 E-value=8.4 Score=37.33 Aligned_cols=27 Identities=30% Similarity=0.512 Sum_probs=21.8
Q ss_pred ccccccccccCCCCcccCCCCcccccc
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEVFKIEE 181 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~F~ied 181 (340)
.+.+|...|++|+.|..+||.......
T Consensus 195 ~~~id~~~C~~Cg~Cv~~CP~~Al~~~ 221 (314)
T TIGR02912 195 KVVRDHSKCIGCGECVLKCPTGAWTRS 221 (314)
T ss_pred eEEeCCCcCcCcchhhhhCCHhhcccC
Confidence 355788899999999999998765433
No 225
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=49.42 E-value=6.4 Score=28.70 Aligned_cols=17 Identities=24% Similarity=0.546 Sum_probs=13.7
Q ss_pred HHHHHHcCCccceeccc
Q 019486 198 VQQAIESCPVDCIHRTS 214 (340)
Q Consensus 198 v~eAv~~CPv~cI~~~~ 214 (340)
...+++.||++||..++
T Consensus 5 C~~C~~~CP~~AI~~~~ 21 (67)
T PF13484_consen 5 CGKCAEACPTGAISGED 21 (67)
T ss_pred hhHHHHhCcHhhccCCC
Confidence 34589999999999873
No 226
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=48.98 E-value=9.6 Score=36.61 Aligned_cols=21 Identities=33% Similarity=0.684 Sum_probs=18.6
Q ss_pred ccccccccCCCCcccCCCCcc
Q 019486 157 FVDEFSCIGCKNCNNVAPEVF 177 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~F 177 (340)
.++++.|-|||.|..+||...
T Consensus 95 ~~~~~lC~GCgaC~~~CP~~A 115 (284)
T COG1149 95 VLNPDLCEGCGACSIVCPEPA 115 (284)
T ss_pred ecCcccccCcccceeeCCCcc
Confidence 467899999999999999883
No 227
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=48.95 E-value=11 Score=30.28 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=19.1
Q ss_pred ccccccccCCCCcccCCCCccccc
Q 019486 157 FVDEFSCIGCKNCNNVAPEVFKIE 180 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~F~ie 180 (340)
.++...|++|+.|..+||......
T Consensus 62 ~i~~~~C~~Cg~C~~~CP~~Ai~~ 85 (101)
T TIGR00402 62 EFDNAECDFCGKCAEACPTNAFHP 85 (101)
T ss_pred EecCccCcCccChhhHCCccccCc
Confidence 356678999999999999876543
No 228
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=48.84 E-value=6.5 Score=43.33 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=21.1
Q ss_pred ccccccCCCCcccCCCCcccccccC
Q 019486 159 DEFSCIGCKNCNNVAPEVFKIEEDF 183 (340)
Q Consensus 159 De~~CiGCg~C~~v~P~~F~iedd~ 183 (340)
++..|+.||.|..+||.......+|
T Consensus 202 ~~~~C~~CG~Cv~VCPvGAL~~k~~ 226 (819)
T PRK08493 202 ETLDCSFCGECIAVCPVGALSSSDF 226 (819)
T ss_pred CcccccccCcHHHhCCCCccccCcc
Confidence 4678999999999999998776554
No 229
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=47.72 E-value=39 Score=33.90 Aligned_cols=83 Identities=17% Similarity=0.337 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHh-------cCCCCCCCChHHHHHHHHHHHHHHHhcChhhhhhhcccccccccccCCCCCCCCCCCcc
Q 019486 84 PEQIKKAYYNCMKA-------CHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSLIATNPFLDDSCPKDHV 156 (340)
Q Consensus 84 ~~eIk~AYr~la~~-------~HPD~~~~~~~~~~~f~~i~~Ay~vLsdp~~R~~YD~~~~~~~~~ldp~~~~~~p~~~v 156 (340)
.++|+++|++.... |-| .+..-..-+.|...|.++..-.-...|..|....+-. -++++.
T Consensus 280 l~~v~~~~~~~~~v~Ct~C~yC~P--CP~gInIP~~f~lyN~~~~~~~~~~~~~~Y~~l~~~~-----~~~~~~------ 346 (391)
T COG1453 280 LEKVEEIYRESLKVPCTGCRYCLP--CPSGINIPEIFRLYNLAVAFDDVDYAKFRYNMLENGG-----HWFPGP------ 346 (391)
T ss_pred HHHHHHHHHHHhcCCCccccccCc--CCCCCChHHHHHHHHHHHhhccchhhHHHHHHHhccC-----ccCCCC------
Confidence 34578888887643 334 2332335677888888776544444466676542110 011111
Q ss_pred ccccccccCCCCcccCCCCcccc
Q 019486 157 FVDEFSCIGCKNCNNVAPEVFKI 179 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~F~i 179 (340)
..+...|++||.|...||..-.|
T Consensus 347 ~g~as~CieCgqCl~~CPq~l~I 369 (391)
T COG1453 347 KGKASDCIECGQCLEKCPQHLDI 369 (391)
T ss_pred cccccccchhhhhhhcCCCcCcH
Confidence 12345699999999999987655
No 230
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=47.07 E-value=7.5 Score=37.95 Aligned_cols=36 Identities=31% Similarity=0.617 Sum_probs=24.6
Q ss_pred ccccccccccCCCCcccCCCCc-ccccccCCceEEccC
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQ 191 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~-F~iedd~G~a~vv~q 191 (340)
.+.+|...|++||.|...||.. |.-++. |.+.++.-
T Consensus 195 ~l~id~~~Ci~Cg~Ci~~Cp~~~~~~ek~-g~~i~VGG 231 (317)
T COG2221 195 KLKIDGSKCIGCGKCIRACPKAAFRGEKV-GIAILVGG 231 (317)
T ss_pred eEEEehhhccCccHHhhhCChhhcchhhc-cEEEEEcc
Confidence 3567899999999999999943 333333 55555543
No 231
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=46.71 E-value=7 Score=38.58 Aligned_cols=35 Identities=31% Similarity=0.438 Sum_probs=25.1
Q ss_pred ccccccccccCCCCcccCCCCcccc-cccCCceEEc
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEVFKI-EEDFGRARVY 189 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~F~i-edd~G~a~vv 189 (340)
.+.+|...|++|+.|..+||....- .++.|....+
T Consensus 208 ~~~id~~~Ci~Cg~Ci~~CP~~a~~~~~~~G~~v~v 243 (341)
T TIGR02066 208 SLEVDVEKCIYCGNCYTMCPAMPIFDPENDGAAIWV 243 (341)
T ss_pred ceeeccccCCcCCchHHhCchhhccCCCCCeEEEEE
Confidence 4678999999999999999976543 3344654444
No 232
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=46.54 E-value=17 Score=29.39 Aligned_cols=46 Identities=11% Similarity=-0.069 Sum_probs=27.8
Q ss_pred CCCCcccCCCCcccccccCCceEEccC-CCCHHHHHHHHHcCCccc-eecc
Q 019486 165 GCKNCNNVAPEVFKIEEDFGRARVYNQ-CGINEFVQQAIESCPVDC-IHRT 213 (340)
Q Consensus 165 GCg~C~~v~P~~F~iedd~G~a~vv~q-~g~~E~v~eAv~~CPv~c-I~~~ 213 (340)
.-+.|..+||......++.|...+-.+ +-++-. |+-.||... |.|.
T Consensus 35 ~~k~C~~aCPagA~~~~e~G~V~vd~e~CigCg~---C~~~C~~~~~~~W~ 82 (95)
T PRK15449 35 ALELLVKACPAGLYKKQDDGSVRFDYAGCLECGT---CRILGLGSALEQWE 82 (95)
T ss_pred hhhHHHHHCCHhhcEeCCCCCEEEcCCCCCcchh---hhhhcCCCCccCcc
Confidence 335788889876543323366555433 444444 788888776 4775
No 233
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=46.18 E-value=5.8 Score=42.41 Aligned_cols=21 Identities=19% Similarity=0.509 Sum_probs=18.9
Q ss_pred cccccccccCCCCcccCCCCc
Q 019486 156 VFVDEFSCIGCKNCNNVAPEV 176 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~~ 176 (340)
+..|...||.||.|+.+|.++
T Consensus 611 i~~D~~kCI~CgrCv~~C~ev 631 (652)
T PRK12814 611 IRFEREKCVDCGICVRTLEEY 631 (652)
T ss_pred eEeccccccCchHHHHHHHHh
Confidence 677999999999999999765
No 234
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=46.08 E-value=6.1 Score=33.58 Aligned_cols=22 Identities=41% Similarity=0.609 Sum_probs=18.6
Q ss_pred ccccccccCCCCcccCCCCccc
Q 019486 157 FVDEFSCIGCKNCNNVAPEVFK 178 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~F~ 178 (340)
.++...|++||.|..+||..+.
T Consensus 85 ~i~~~~C~~Cg~Cv~vCP~~a~ 106 (133)
T PRK09625 85 GVDYSHCKGCGVCVEVCPTNPK 106 (133)
T ss_pred EeCcCcCcChhHHHHHCCcCce
Confidence 4567789999999999998853
No 235
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=45.99 E-value=11 Score=40.95 Aligned_cols=24 Identities=33% Similarity=0.674 Sum_probs=20.0
Q ss_pred ccccccccCCCCcccCCCCccccc
Q 019486 157 FVDEFSCIGCKNCNNVAPEVFKIE 180 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~F~ie 180 (340)
-+.+..|..||.|+.+||...-|+
T Consensus 188 ~i~~SSCVsCG~CvtVCP~nALme 211 (978)
T COG3383 188 PINESSCVSCGACVTVCPVNALME 211 (978)
T ss_pred ccccccccccCccceecchhhhhh
Confidence 356778999999999999886665
No 236
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=45.19 E-value=9.3 Score=34.28 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=20.0
Q ss_pred ccccccccCCCCcccCCCCcc-ccccc
Q 019486 157 FVDEFSCIGCKNCNNVAPEVF-KIEED 182 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~F-~iedd 182 (340)
.+|...|++||.|..+||... .+..+
T Consensus 98 ~id~~~Ci~Cg~Cv~aCP~~AI~~~~~ 124 (183)
T TIGR00403 98 SIDFGVCIFCGNCVEYCPTNCLSMTEE 124 (183)
T ss_pred ecCcccccCcCchhhhcCCCCeecccc
Confidence 356778999999999999764 34444
No 237
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=44.92 E-value=11 Score=32.97 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=18.5
Q ss_pred ccccccccCCCCcccCCCCccc
Q 019486 157 FVDEFSCIGCKNCNNVAPEVFK 178 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~F~ 178 (340)
.++...|++|+.|..+||....
T Consensus 93 ~i~~~~C~~Cg~Cv~~CP~~Ai 114 (164)
T PRK05888 93 DINFGRCIFCGFCEEACPTDAI 114 (164)
T ss_pred ecCCCcCcccCcchhhcCcCcc
Confidence 3677899999999999997653
No 238
>PRK06991 ferredoxin; Provisional
Probab=44.22 E-value=7.8 Score=37.07 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=19.2
Q ss_pred cccccccccCCCCcccCCCCccc
Q 019486 156 VFVDEFSCIGCKNCNNVAPEVFK 178 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~~F~ 178 (340)
..++...|++|+.|..+||...+
T Consensus 110 ~~v~~~~CigCg~Cv~vCP~~AI 132 (270)
T PRK06991 110 HTVLADLCTGCDLCVPPCPVDCI 132 (270)
T ss_pred eeeCHhhCCCchHHHhhCCcCCe
Confidence 34677899999999999998753
No 239
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=44.03 E-value=9.9 Score=35.64 Aligned_cols=15 Identities=33% Similarity=0.957 Sum_probs=13.4
Q ss_pred cccCCCCcccCCCCc
Q 019486 162 SCIGCKNCNNVAPEV 176 (340)
Q Consensus 162 ~CiGCg~C~~v~P~~ 176 (340)
.||.||.|...||..
T Consensus 143 ~CI~Cg~C~s~CP~~ 157 (234)
T COG0479 143 ECILCGCCTAACPSI 157 (234)
T ss_pred hccccchhhhhCCcc
Confidence 499999999999965
No 240
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=43.06 E-value=9.9 Score=30.92 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=19.0
Q ss_pred cccccccccCCCCcccCCCCccc
Q 019486 156 VFVDEFSCIGCKNCNNVAPEVFK 178 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~~F~ 178 (340)
..++...|++|+.|..+||....
T Consensus 76 ~~id~~~C~~Cg~Cv~~CP~~AI 98 (105)
T PRK09624 76 PVFDYDYCKGCGICANECPTKAI 98 (105)
T ss_pred EEECchhCCCcCchhhhcCcCcE
Confidence 35677899999999999997653
No 241
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=42.36 E-value=6.8 Score=40.69 Aligned_cols=15 Identities=40% Similarity=0.950 Sum_probs=14.0
Q ss_pred cccCCCCcccCCCCc
Q 019486 162 SCIGCKNCNNVAPEV 176 (340)
Q Consensus 162 ~CiGCg~C~~v~P~~ 176 (340)
.||.|+.|..+||..
T Consensus 366 sCi~C~~C~d~CP~~ 380 (529)
T COG4656 366 SCIRCSLCADACPVN 380 (529)
T ss_pred ccccHHHHHHhCccc
Confidence 899999999999976
No 242
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=41.65 E-value=12 Score=33.05 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=18.0
Q ss_pred ccccccccCCCCcccCCCCccc
Q 019486 157 FVDEFSCIGCKNCNNVAPEVFK 178 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~F~ 178 (340)
.+|...|++|+.|..+||....
T Consensus 95 ~id~~~C~~Cg~C~~~CP~~AI 116 (167)
T CHL00014 95 SIDFGVCIFCGNCVEYCPTNCL 116 (167)
T ss_pred cCCCCcCcCccchHhhcCcCce
Confidence 3566779999999999998643
No 243
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=41.01 E-value=17 Score=36.83 Aligned_cols=34 Identities=21% Similarity=0.540 Sum_probs=23.9
Q ss_pred ccccccccccCCCCcccCCCCcccccccCCceEE
Q 019486 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARV 188 (340)
Q Consensus 155 ~vfvDe~~CiGCg~C~~v~P~~F~iedd~G~a~v 188 (340)
.+.+|...|+.|+.|+.+||.-...+.+.|....
T Consensus 266 ~~~id~~~C~~Cm~Ci~~~p~a~~~g~~~G~~il 299 (402)
T TIGR02064 266 ELSIDNRECVRCMHCINKMPKALHPGDERGVTIL 299 (402)
T ss_pred eEEEcchhcCcCccccccCcccccCCCCCeEEEE
Confidence 4567888899999999988886555544454433
No 244
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=40.58 E-value=13 Score=42.66 Aligned_cols=21 Identities=29% Similarity=0.933 Sum_probs=18.5
Q ss_pred cccccccccCCCCcccCCCCc
Q 019486 156 VFVDEFSCIGCKNCNNVAPEV 176 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~~ 176 (340)
+.++...|++|+.|..+||..
T Consensus 734 i~i~~~~C~gCg~Cv~~CP~~ 754 (1165)
T TIGR02176 734 IQISPLDCTGCGNCVDICPAK 754 (1165)
T ss_pred EEeccccCcCccchhhhcCCC
Confidence 457889999999999999985
No 245
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=40.56 E-value=17 Score=36.20 Aligned_cols=16 Identities=25% Similarity=0.750 Sum_probs=13.8
Q ss_pred ccccCCCCcccCCCCc
Q 019486 161 FSCIGCKNCNNVAPEV 176 (340)
Q Consensus 161 ~~CiGCg~C~~v~P~~ 176 (340)
..|++||.|..+||..
T Consensus 23 ~~C~~Cg~C~~~CP~~ 38 (407)
T PRK11274 23 RKCVHCGFCTATCPTY 38 (407)
T ss_pred HhCccCCCccccCCcc
Confidence 3599999999999954
No 246
>PLN00071 photosystem I subunit VII; Provisional
Probab=39.56 E-value=12 Score=28.54 Aligned_cols=22 Identities=32% Similarity=0.791 Sum_probs=17.9
Q ss_pred cccccccCCCCcccCCCCcccc
Q 019486 158 VDEFSCIGCKNCNNVAPEVFKI 179 (340)
Q Consensus 158 vDe~~CiGCg~C~~v~P~~F~i 179 (340)
++...|++|+.|..+||.....
T Consensus 43 ~~~~~C~~Cg~C~~~CP~~Ai~ 64 (81)
T PLN00071 43 PRTEDCVGCKRCESACPTDFLS 64 (81)
T ss_pred CCCCcCcChhhHHhhcCCccce
Confidence 3557799999999999987543
No 247
>PRK02651 photosystem I subunit VII; Provisional
Probab=39.33 E-value=14 Score=28.01 Aligned_cols=21 Identities=33% Similarity=0.850 Sum_probs=17.4
Q ss_pred cccccccCCCCcccCCCCccc
Q 019486 158 VDEFSCIGCKNCNNVAPEVFK 178 (340)
Q Consensus 158 vDe~~CiGCg~C~~v~P~~F~ 178 (340)
++...|++|+.|..+||..+.
T Consensus 43 ~~~~~C~~Cg~C~~~CP~~ai 63 (81)
T PRK02651 43 PRTEDCVGCKRCETACPTDFL 63 (81)
T ss_pred CCCCcCCChhhhhhhcCCCce
Confidence 455689999999999997754
No 248
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=37.73 E-value=13 Score=41.90 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=17.2
Q ss_pred cccccccccCCCCcccCCCCc
Q 019486 156 VFVDEFSCIGCKNCNNVAPEV 176 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~~ 176 (340)
+..++..|++||.|..+||..
T Consensus 921 ~~~~~~~C~~CG~C~~~CP~~ 941 (1019)
T PRK09853 921 IVHLDAMCNECGNCAQFCPWN 941 (1019)
T ss_pred eEEcCccCccccchhhhCCCC
Confidence 333458899999999999976
No 249
>CHL00065 psaC photosystem I subunit VII
Probab=37.01 E-value=15 Score=28.06 Aligned_cols=21 Identities=33% Similarity=0.857 Sum_probs=17.3
Q ss_pred cccccccCCCCcccCCCCccc
Q 019486 158 VDEFSCIGCKNCNNVAPEVFK 178 (340)
Q Consensus 158 vDe~~CiGCg~C~~v~P~~F~ 178 (340)
++...|++|+.|..+||....
T Consensus 43 ~~~~~C~~C~~C~~~CP~~Ai 63 (81)
T CHL00065 43 PRTEDCVGCKRCESACPTDFL 63 (81)
T ss_pred CCCCcCCChhhhhhhcCcccc
Confidence 455679999999999998754
No 250
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.01 E-value=16 Score=35.49 Aligned_cols=24 Identities=38% Similarity=0.650 Sum_probs=18.2
Q ss_pred HHHHHhhh---cCCCCCCCccCCccccC
Q 019486 313 RRWREYSR---RGADQPPTFKLPEATTS 337 (340)
Q Consensus 313 r~~~~~~~---~~~~~~~~~~~~~~~~~ 337 (340)
|||||+|. +...++|| ++|...+.
T Consensus 321 rrwrE~sn~qa~~~Kkk~t-~~~sr~~k 347 (374)
T KOG1608|consen 321 RRWREASNEQAKKEKKKLT-KKPSRSSK 347 (374)
T ss_pred HHHHHhhhhhhHHhhcccc-cCcccchh
Confidence 89999987 44667888 88876543
No 251
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=36.55 E-value=8.7 Score=35.69 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=22.9
Q ss_pred cccccccccCCCCcccCCCCccccccc
Q 019486 156 VFVDEFSCIGCKNCNNVAPEVFKIEED 182 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~~F~iedd 182 (340)
..++...|++|+.|...||..|+.+++
T Consensus 198 ~~i~~~~C~~C~~C~~~CP~~~~~~~~ 224 (228)
T TIGR03294 198 PNVNRDRCIKCGACYVQCPRAFWPEYE 224 (228)
T ss_pred EEEChhhccCHHHHHHHcCCCCcchhh
Confidence 456788999999999999999987654
No 252
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=36.31 E-value=17 Score=29.72 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=19.2
Q ss_pred ccccccccCCCCcccCCCCcc-cccc
Q 019486 157 FVDEFSCIGCKNCNNVAPEVF-KIEE 181 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~F-~ied 181 (340)
.++...|++|+.|..+||... .+..
T Consensus 78 ~~~~~~C~~Cg~Cv~~CP~~al~~~~ 103 (122)
T TIGR01971 78 QINFGRCIFCGLCEEACPTDAIVLTP 103 (122)
T ss_pred eECcccCCCCCchhhhCCCccccccc
Confidence 356778999999999999763 3443
No 253
>PRK06273 ferredoxin; Provisional
Probab=36.20 E-value=17 Score=32.09 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=19.6
Q ss_pred cccccccccCCCCcccCCCCccc
Q 019486 156 VFVDEFSCIGCKNCNNVAPEVFK 178 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~~F~ 178 (340)
..++...|++|+.|..+||....
T Consensus 86 ~~Id~~kCi~Cg~C~~aCP~~AI 108 (165)
T PRK06273 86 PKIDYEKCVYCLYCHDFCPVFAL 108 (165)
T ss_pred eecccccCcCCCCcchhCCHhhe
Confidence 35678899999999999999764
No 254
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=36.00 E-value=18 Score=34.18 Aligned_cols=17 Identities=35% Similarity=0.897 Sum_probs=14.9
Q ss_pred cccccCCCCcccCCCCc
Q 019486 160 EFSCIGCKNCNNVAPEV 176 (340)
Q Consensus 160 e~~CiGCg~C~~v~P~~ 176 (340)
...||.||.|..+||..
T Consensus 156 ~~~CI~CG~C~saCP~~ 172 (250)
T PRK07570 156 AAACIGCGACVAACPNG 172 (250)
T ss_pred ccccCCCcccccccCCc
Confidence 34699999999999986
No 255
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=35.75 E-value=17 Score=32.32 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=18.6
Q ss_pred ccccccccCCCCcccCCCCccc
Q 019486 157 FVDEFSCIGCKNCNNVAPEVFK 178 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~F~ 178 (340)
.++...|++|+.|..+||....
T Consensus 69 ~i~~~~C~~Cg~C~~vCP~~AI 90 (180)
T PRK12387 69 EFNLGRCIFCGRCEEVCPTAAI 90 (180)
T ss_pred eeccccCcCccchhhhcCcCce
Confidence 4677889999999999998754
No 256
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=35.67 E-value=13 Score=37.48 Aligned_cols=20 Identities=40% Similarity=0.772 Sum_probs=17.8
Q ss_pred cccccccccCCCCcccCCCC
Q 019486 156 VFVDEFSCIGCKNCNNVAPE 175 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~ 175 (340)
..++...|++|+.|..+||.
T Consensus 372 ~~i~~~~C~~Cg~C~~~CP~ 391 (420)
T PRK08318 372 PEVIEEECVGCNLCAHVCPV 391 (420)
T ss_pred EEechhhCcccchHHhhCCC
Confidence 34788999999999999998
No 257
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=34.52 E-value=3.6 Score=42.62 Aligned_cols=54 Identities=28% Similarity=0.561 Sum_probs=33.6
Q ss_pred ccccccCCCCcccCCCCcccccccCCceEEcc--CCCC-------HHHHHHHHHcCCccceecc
Q 019486 159 DEFSCIGCKNCNNVAPEVFKIEEDFGRARVYN--QCGI-------NEFVQQAIESCPVDCIHRT 213 (340)
Q Consensus 159 De~~CiGCg~C~~v~P~~F~iedd~G~a~vv~--q~g~-------~E~v~eAv~~CPv~cI~~~ 213 (340)
-...||.|+.|+.++.++..+++ +|..-.-. |.|. .|+.-+.|+.|||.|+.-.
T Consensus 173 imtrciqctrcvrfaseiagv~d-lgttgrg~d~qigtyvek~f~selsgniidicpvgaltsk 235 (708)
T KOG2282|consen 173 IMTRCIQCTRCVRFASEIAGVDD-LGTTGRGNDMQIGTYVEKLFMSELSGNIIDICPVGALTSK 235 (708)
T ss_pred HHHHHHhHHHHHHHHHhhcCCcc-cccccCCCcchHHHHHHHHHHHhhcCCeeeeccccccccC
Confidence 45679999999998887766543 23211000 1121 1344557899999998744
No 258
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.02 E-value=72 Score=27.10 Aligned_cols=53 Identities=13% Similarity=0.122 Sum_probs=39.6
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhc
Q 019486 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLS 124 (340)
Q Consensus 68 ~~~d~Y~vLgv~~~as~~eIk~AYr~la~~~HPD~~~~~~~~~~~f~~i~~Ay~vLs 124 (340)
.-..--.||+|++..+.++|.+.|..|-....+.+.+. .-.-.+|-.|-+-|-
T Consensus 57 TlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGS----FYLQSKVfRAkErld 109 (132)
T KOG3442|consen 57 TLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGS----FYLQSKVFRAKERLD 109 (132)
T ss_pred cHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcc----eeehHHHHHHHHHHH
Confidence 33467889999999999999999999999888877654 222245555666553
No 259
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=32.97 E-value=15 Score=30.27 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=17.4
Q ss_pred ccccccccCCCCcccCCCCcc
Q 019486 157 FVDEFSCIGCKNCNNVAPEVF 177 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~F 177 (340)
.++...|++|+.|..+||...
T Consensus 69 ~i~~~~C~~Cg~Cv~~CP~~A 89 (120)
T PRK08348 69 ALWTGRCVFCGQCVDVCPTGA 89 (120)
T ss_pred EecCCcCcChhhhHHhCCcCc
Confidence 456678999999999999764
No 260
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=32.14 E-value=16 Score=34.73 Aligned_cols=20 Identities=35% Similarity=0.667 Sum_probs=17.4
Q ss_pred cccccccCCCCcccCCCCcc
Q 019486 158 VDEFSCIGCKNCNNVAPEVF 177 (340)
Q Consensus 158 vDe~~CiGCg~C~~v~P~~F 177 (340)
++...|++|+.|..+||...
T Consensus 239 i~~~~C~~Cg~Cv~~CP~~A 258 (271)
T PRK09477 239 VTSGDCITCGRCIDVCSEDV 258 (271)
T ss_pred eCcccCcChhHHHhhcCccc
Confidence 56678999999999999864
No 261
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=31.96 E-value=17 Score=29.38 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=18.6
Q ss_pred cccccccccCCCCcccCCCCcc
Q 019486 156 VFVDEFSCIGCKNCNNVAPEVF 177 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~~F 177 (340)
+.+|...|.+|+.|..+||...
T Consensus 76 ~~id~~~C~~Cg~Cv~~CP~~A 97 (105)
T PRK09623 76 VAIDYDYCKGCGICANECPTKA 97 (105)
T ss_pred EEeCchhCcCcchhhhhcCcCc
Confidence 4567888999999999999764
No 262
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=31.78 E-value=19 Score=34.70 Aligned_cols=20 Identities=35% Similarity=0.662 Sum_probs=16.5
Q ss_pred cccccccCCCCcccCCCCcc
Q 019486 158 VDEFSCIGCKNCNNVAPEVF 177 (340)
Q Consensus 158 vDe~~CiGCg~C~~v~P~~F 177 (340)
+|...|.+|+.|..+||...
T Consensus 286 ~d~~~C~gCg~C~~~CP~~A 305 (312)
T PRK14028 286 FDYQYCKGCGVCAEVCPTGA 305 (312)
T ss_pred CCcccCcCcCchhhhCCHhh
Confidence 35577999999999999653
No 263
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=30.79 E-value=1.8e+02 Score=22.61 Aligned_cols=34 Identities=21% Similarity=0.420 Sum_probs=26.2
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHhc----CCCC
Q 019486 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKAC----HPDL 102 (340)
Q Consensus 69 ~~d~Y~vLgv~~~as~~eIk~AYr~la~~~----HPD~ 102 (340)
+++.-+++|+++-++.+||+.|-++...++ ||..
T Consensus 2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~ 39 (88)
T COG5552 2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSA 39 (88)
T ss_pred ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcch
Confidence 346678899999999999999876665554 6654
No 264
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=28.81 E-value=28 Score=29.68 Aligned_cols=16 Identities=25% Similarity=0.727 Sum_probs=13.8
Q ss_pred ccccCCCCcccCCCCc
Q 019486 161 FSCIGCKNCNNVAPEV 176 (340)
Q Consensus 161 ~~CiGCg~C~~v~P~~ 176 (340)
..|+.||.|..+||..
T Consensus 2 ~~Ci~CG~C~~~CP~~ 17 (144)
T TIGR03290 2 KACYQCGTCTGSCPSG 17 (144)
T ss_pred ccccCCCCCcCcCCCc
Confidence 3699999999999963
No 265
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=28.80 E-value=32 Score=31.20 Aligned_cols=27 Identities=26% Similarity=0.534 Sum_probs=22.1
Q ss_pred HHHHHcCCccceecccccchhhhHHHH
Q 019486 199 QQAIESCPVDCIHRTSAQQLSLLEDEM 225 (340)
Q Consensus 199 ~eAv~~CPv~cI~~~~~~~l~~Le~~~ 225 (340)
-+|++.||||||......=.++++++.
T Consensus 121 tkCiqaCpvdAivg~~~~mhtv~~dlC 147 (198)
T COG2878 121 TKCIQACPVDAIVGATKAMHTVIADLC 147 (198)
T ss_pred HHHHHhCChhhhhccchhHHHHHHHHh
Confidence 449999999999988887777777764
No 266
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=28.66 E-value=26 Score=34.78 Aligned_cols=17 Identities=41% Similarity=0.884 Sum_probs=15.1
Q ss_pred ccccCCCCcccCCCCcc
Q 019486 161 FSCIGCKNCNNVAPEVF 177 (340)
Q Consensus 161 ~~CiGCg~C~~v~P~~F 177 (340)
..||+||.|..+||.-|
T Consensus 226 ~rCi~Cg~C~~~CPtC~ 242 (344)
T PRK15055 226 SRCIACGRCNFVCPTCT 242 (344)
T ss_pred hhCccCccccccCCceE
Confidence 38999999999999864
No 267
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=28.20 E-value=27 Score=28.00 Aligned_cols=22 Identities=36% Similarity=0.800 Sum_probs=17.7
Q ss_pred ccccccccCCCCcccCCCCccc
Q 019486 157 FVDEFSCIGCKNCNNVAPEVFK 178 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~F~ 178 (340)
.++...|++|+.|..+||...+
T Consensus 49 ~i~~~~C~~C~~C~~~CP~~AI 70 (103)
T PRK09626 49 VVHPESCIGCRECELHCPDFAI 70 (103)
T ss_pred EeCCccCCCcCcchhhCChhhE
Confidence 3556789999999999997643
No 268
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=28.12 E-value=26 Score=34.60 Aligned_cols=21 Identities=29% Similarity=0.944 Sum_probs=17.6
Q ss_pred ccccccCCCCcccCCCCcccc
Q 019486 159 DEFSCIGCKNCNNVAPEVFKI 179 (340)
Q Consensus 159 De~~CiGCg~C~~v~P~~F~i 179 (340)
....|+|||.|...||..-.|
T Consensus 299 G~~~CvgCGrC~~~CP~~idi 319 (334)
T TIGR02910 299 GYHMCVGCGRCDDICPEYISF 319 (334)
T ss_pred CccccCCcCchhhhCCCCCCH
Confidence 466799999999999988555
No 269
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=27.96 E-value=30 Score=33.90 Aligned_cols=21 Identities=29% Similarity=0.640 Sum_probs=17.6
Q ss_pred cccccccCCCCcccCCCCccc
Q 019486 158 VDEFSCIGCKNCNNVAPEVFK 178 (340)
Q Consensus 158 vDe~~CiGCg~C~~v~P~~F~ 178 (340)
++...|++|+.|..+||....
T Consensus 50 ~d~~~C~~Cg~C~~vCP~~~~ 70 (341)
T PRK09326 50 AAPNVCEGCLTCSRICPVVDG 70 (341)
T ss_pred CCcCcCcCcCchhhhCCCCcc
Confidence 466789999999999997643
No 270
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=27.87 E-value=15 Score=36.00 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=17.1
Q ss_pred ccccccCCCCcccCCCCcccc
Q 019486 159 DEFSCIGCKNCNNVAPEVFKI 179 (340)
Q Consensus 159 De~~CiGCg~C~~v~P~~F~i 179 (340)
.-..|+.||.|..+||.....
T Consensus 7 ~~~~Cv~Cg~C~~~CP~~~~~ 27 (388)
T COG0247 7 SLDKCVHCGFCTNVCPSYRAT 27 (388)
T ss_pred HHHhcCCCCcccCcCCCcccc
Confidence 345799999999999977654
No 271
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=27.57 E-value=32 Score=33.95 Aligned_cols=47 Identities=26% Similarity=0.542 Sum_probs=27.0
Q ss_pred cccccccCCCCcccCCCCcccccccCCceEEccCCCCHHHHHHHHHcCCc
Q 019486 158 VDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPV 207 (340)
Q Consensus 158 vDe~~CiGCg~C~~v~P~~F~iedd~G~a~vv~q~g~~E~v~eAv~~CPv 207 (340)
+|...|.+||.|..+||. ..+..+ +.-..+.++- +.....+...||.
T Consensus 2 ~~~~~c~~Cg~C~a~cp~-~i~~~~-~~~~~~~~c~-~~~~~~~~~~cp~ 48 (332)
T COG1035 2 IDAGLCTGCGTCAAVCPY-AITERD-EAPLLIEECM-DNGHGTCLKVCPE 48 (332)
T ss_pred CcCcccccchhhHhhCCc-eEEEec-ccchhhhhhh-cccchHHhhhCcc
Confidence 356679999999999999 433222 2222222211 1122347888993
No 272
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=27.57 E-value=16 Score=31.19 Aligned_cols=21 Identities=19% Similarity=0.475 Sum_probs=17.9
Q ss_pred ccccccccCCCCcccCCCCcc
Q 019486 157 FVDEFSCIGCKNCNNVAPEVF 177 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~F 177 (340)
.++...|++|+.|..+||...
T Consensus 41 ~id~~~C~~Cg~Cv~~CP~~A 61 (132)
T TIGR02060 41 NIEPDMCWECYSCVKACPQGA 61 (132)
T ss_pred ecCchhCccHHHHHHhCCcCc
Confidence 367788999999999999753
No 273
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=27.30 E-value=22 Score=36.61 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=19.6
Q ss_pred cccccccccCCCCcccCCCCccc
Q 019486 156 VFVDEFSCIGCKNCNNVAPEVFK 178 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~~F~ 178 (340)
.++.+..|||||.|+.-||-..+
T Consensus 45 ~~ise~lCigcgicvkkcpf~ai 67 (592)
T KOG0063|consen 45 AFISEELCIGCGICVKKCPFEAI 67 (592)
T ss_pred chhhHhhhccccceeeccCcceE
Confidence 57788999999999999986653
No 274
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=26.94 E-value=31 Score=30.78 Aligned_cols=27 Identities=26% Similarity=0.535 Sum_probs=19.8
Q ss_pred cccccccCCCCcccCCCCccc-ccccCC
Q 019486 158 VDEFSCIGCKNCNNVAPEVFK-IEEDFG 184 (340)
Q Consensus 158 vDe~~CiGCg~C~~v~P~~F~-iedd~G 184 (340)
++...|++|+.|..+||...+ +..++.
T Consensus 70 ~~~~~C~~Cg~C~~~CPt~AI~~~~~~~ 97 (181)
T PRK08222 70 LYLGRCIYCGRCEEVCPTRAIQLTNNFE 97 (181)
T ss_pred eccCcCcCCCCcccccCcCeEEecccee
Confidence 455789999999999997643 444433
No 275
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=26.38 E-value=18 Score=32.62 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=18.4
Q ss_pred ccccccccCCCCcccCCCCccc
Q 019486 157 FVDEFSCIGCKNCNNVAPEVFK 178 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~F~ 178 (340)
.++...|++|+.|..+||....
T Consensus 140 ~v~~~~C~~Cg~Cv~vCP~~AI 161 (191)
T PRK05113 140 TVISDLCTGCDLCVAPCPTDCI 161 (191)
T ss_pred eecCCcCCchHHHHHHcCcCce
Confidence 4567789999999999998754
No 276
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=26.34 E-value=31 Score=32.55 Aligned_cols=18 Identities=28% Similarity=0.645 Sum_probs=15.1
Q ss_pred cccccCCCCcccCCCCcc
Q 019486 160 EFSCIGCKNCNNVAPEVF 177 (340)
Q Consensus 160 e~~CiGCg~C~~v~P~~F 177 (340)
...||.||.|..+||..-
T Consensus 151 ~~~CI~CG~C~saCP~~~ 168 (249)
T PRK08640 151 LSKCMTCGCCLEACPNVN 168 (249)
T ss_pred hhhccCcCcccccCCCCc
Confidence 456999999999999653
No 277
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=25.26 E-value=31 Score=31.58 Aligned_cols=18 Identities=28% Similarity=0.623 Sum_probs=15.4
Q ss_pred ccccccCCCCcccCCCCc
Q 019486 159 DEFSCIGCKNCNNVAPEV 176 (340)
Q Consensus 159 De~~CiGCg~C~~v~P~~ 176 (340)
+...||.||.|..+||..
T Consensus 136 ~~~~Ci~CG~C~~~CP~~ 153 (220)
T TIGR00384 136 QLSGCILCGCCYSSCPAF 153 (220)
T ss_pred hhhhccccccccccCCCC
Confidence 346799999999999975
No 278
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=25.21 E-value=55 Score=30.97 Aligned_cols=44 Identities=14% Similarity=0.149 Sum_probs=24.0
Q ss_pred CCCCcccCCCCcccccccCCceEEccC-CCCHHHHHHHHHcCCccceec
Q 019486 165 GCKNCNNVAPEVFKIEEDFGRARVYNQ-CGINEFVQQAIESCPVDCIHR 212 (340)
Q Consensus 165 GCg~C~~v~P~~F~iedd~G~a~vv~q-~g~~E~v~eAv~~CPv~cI~~ 212 (340)
||..++..|.+-..+.+. +...+... |..|.. |+..||+++|.+
T Consensus 23 gc~~~C~~c~~p~~~~~~-~~~~~~~~~C~~C~~---C~~~Cp~~a~~~ 67 (295)
T TIGR02494 23 GCPLRCKWCSNPESQRKS-PELLFKENRCLGCGK---CVEVCPAGTARL 67 (295)
T ss_pred cCCccCcccCCccccCCC-ceEEEccccCCCCch---hhhhCccccccc
Confidence 555555555433333332 33332222 555544 899999999973
No 279
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=24.76 E-value=71 Score=29.37 Aligned_cols=51 Identities=24% Similarity=0.472 Sum_probs=34.6
Q ss_pred ccccCCC--CcccCCCCcccccc-cCCceEEccC-CCCHHHHHHHHHcCCccceeccc
Q 019486 161 FSCIGCK--NCNNVAPEVFKIEE-DFGRARVYNQ-CGINEFVQQAIESCPVDCIHRTS 214 (340)
Q Consensus 161 ~~CiGCg--~C~~v~P~~F~ied-d~G~a~vv~q-~g~~E~v~eAv~~CPv~cI~~~~ 214 (340)
..|--|- .|..+||.....-. ..|...+-.+ +-++.- |+..||-+|+.+-.
T Consensus 67 ~~C~HC~~ppCv~vCPtgA~~k~~~dGiV~vd~d~CIGC~y---Ci~ACPyga~~~~~ 121 (203)
T COG0437 67 ISCMHCEDPPCVKVCPTGALFKREEDGIVLVDKDLCIGCGY---CIAACPYGAPQFNP 121 (203)
T ss_pred ccccCCCCCcccccCCCcceEEecCCCEEEecCCcccCchH---HHhhCCCCCceeCc
Confidence 4566664 58999998855432 2376665444 444544 99999999998766
No 280
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=24.56 E-value=38 Score=32.52 Aligned_cols=16 Identities=31% Similarity=0.933 Sum_probs=14.1
Q ss_pred ccccCCCCcccCCCCc
Q 019486 161 FSCIGCKNCNNVAPEV 176 (340)
Q Consensus 161 ~~CiGCg~C~~v~P~~ 176 (340)
..||.||.|..+||..
T Consensus 187 ~~CI~CG~C~saCPv~ 202 (276)
T PLN00129 187 YECILCACCSTSCPSY 202 (276)
T ss_pred hhCccccccccccCCC
Confidence 4799999999999954
No 281
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=24.47 E-value=33 Score=33.51 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=16.5
Q ss_pred HHHHHHHHHcCCccceecccc
Q 019486 195 NEFVQQAIESCPVDCIHRTSA 215 (340)
Q Consensus 195 ~E~v~eAv~~CPv~cI~~~~~ 215 (340)
|..+..|++.||++||.....
T Consensus 207 C~~C~~C~~~CP~~Ai~~~~~ 227 (314)
T TIGR02486 207 CETCGKCADECPSGAISKGGE 227 (314)
T ss_pred CcchhHHHhhCCccccCCCCC
Confidence 345666999999999997644
No 282
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=24.00 E-value=35 Score=33.72 Aligned_cols=23 Identities=35% Similarity=0.937 Sum_probs=18.5
Q ss_pred cccccCCCCcccCCCCc--cccccc
Q 019486 160 EFSCIGCKNCNNVAPEV--FKIEED 182 (340)
Q Consensus 160 e~~CiGCg~C~~v~P~~--F~iedd 182 (340)
...||+||.|..+||.- |.|.+.
T Consensus 219 ~~rCi~C~~C~~~CPtC~Cf~i~D~ 243 (334)
T TIGR02910 219 DSRCIACGRCNTVCPTCTCFSMQDV 243 (334)
T ss_pred HhhCCcCccccccCCceEeeEEEEe
Confidence 45799999999999977 566554
No 283
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=23.99 E-value=24 Score=33.15 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=17.9
Q ss_pred ccccccccCCCCcccCCCCcc
Q 019486 157 FVDEFSCIGCKNCNNVAPEVF 177 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~F 177 (340)
.++...|+.|+.|..+||...
T Consensus 230 ~i~~~~C~~Cg~Cv~~CP~~A 250 (255)
T TIGR02163 230 LVLSGDCTLCGRCIDVCHEDV 250 (255)
T ss_pred EeccccccchhHHHHhCCccc
Confidence 457788999999999999764
No 284
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=23.40 E-value=70 Score=16.47 Aligned_cols=13 Identities=23% Similarity=0.207 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhc
Q 019486 112 FCMFINEVYAVLS 124 (340)
Q Consensus 112 ~f~~i~~Ay~vLs 124 (340)
.|..|..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 3667788887764
No 285
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=23.21 E-value=33 Score=34.71 Aligned_cols=21 Identities=14% Similarity=0.458 Sum_probs=16.5
Q ss_pred HHHHHHHHHcCCccceecccc
Q 019486 195 NEFVQQAIESCPVDCIHRTSA 215 (340)
Q Consensus 195 ~E~v~eAv~~CPv~cI~~~~~ 215 (340)
.+.+.++++.||+.||+|...
T Consensus 244 ~~~~~~~v~~Cp~~ai~~~~~ 264 (402)
T TIGR02064 244 FDIENEVVNRCPTKAISWDGS 264 (402)
T ss_pred cccchhHhhcCCccccccCCC
Confidence 344567899999999999753
No 286
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=23.04 E-value=38 Score=36.00 Aligned_cols=23 Identities=30% Similarity=0.639 Sum_probs=19.5
Q ss_pred cccccCCCCcccCCCCccccccc
Q 019486 160 EFSCIGCKNCNNVAPEVFKIEED 182 (340)
Q Consensus 160 e~~CiGCg~C~~v~P~~F~iedd 182 (340)
-..|..||.|..+||+.+.+.+.
T Consensus 399 a~kc~~cG~C~~~CP~~l~i~ea 421 (772)
T COG1152 399 ARKCTYCGNCMRACPNELDIPEA 421 (772)
T ss_pred HHhcccccchhccCCcccchHHH
Confidence 35799999999999999987643
No 287
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=22.79 E-value=34 Score=37.65 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=19.5
Q ss_pred cccccCCCCcccCCCCcccccccC
Q 019486 160 EFSCIGCKNCNNVAPEVFKIEEDF 183 (340)
Q Consensus 160 e~~CiGCg~C~~v~P~~F~iedd~ 183 (340)
...|..||.|+.+||.....+..|
T Consensus 189 ~~~~~~cG~cv~vCP~GAl~~k~~ 212 (797)
T PRK07860 189 PFQSYFSGNTVQICPVGALTGAAY 212 (797)
T ss_pred CcCccccCCchhhCCccccccccc
Confidence 345778999999999998877654
No 288
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=22.69 E-value=33 Score=34.10 Aligned_cols=23 Identities=39% Similarity=0.764 Sum_probs=19.0
Q ss_pred cccccccccCCCCcccCCCCccc
Q 019486 156 VFVDEFSCIGCKNCNNVAPEVFK 178 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~~F~ 178 (340)
..++...|++|+.|..+||....
T Consensus 45 ~~id~~~C~~Cg~Cv~~CP~~Ai 67 (374)
T TIGR02512 45 RLLDESNCIGCGQCSLVCPVGAI 67 (374)
T ss_pred cccCcccCcCccCHHHhCCCChh
Confidence 34677889999999999997654
No 289
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=22.25 E-value=31 Score=33.77 Aligned_cols=24 Identities=33% Similarity=0.600 Sum_probs=20.2
Q ss_pred CccccccccccCCCCcccCCCCcc
Q 019486 154 DHVFVDEFSCIGCKNCNNVAPEVF 177 (340)
Q Consensus 154 ~~vfvDe~~CiGCg~C~~v~P~~F 177 (340)
..+.++...|++|+.|...||...
T Consensus 214 ~~~~I~~~~ci~c~~c~~ac~~ga 237 (354)
T COG2768 214 KVVKIDYEKCIGCGQCMEACPYGA 237 (354)
T ss_pred cceeechhhccchhhhhhhccCcc
Confidence 456689999999999999998653
No 290
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=22.05 E-value=41 Score=28.66 Aligned_cols=19 Identities=32% Similarity=0.805 Sum_probs=16.2
Q ss_pred ccccCCCCcccCCCCcccc
Q 019486 161 FSCIGCKNCNNVAPEVFKI 179 (340)
Q Consensus 161 ~~CiGCg~C~~v~P~~F~i 179 (340)
+.|..|+.|..+||....+
T Consensus 46 ~~C~~Cg~C~~~CP~~i~~ 64 (144)
T TIGR03290 46 WMCTTCYTCQERCPRDVKI 64 (144)
T ss_pred CcCcCcCchhhhcCCCCCH
Confidence 4699999999999987654
No 291
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=21.91 E-value=41 Score=33.88 Aligned_cols=20 Identities=20% Similarity=0.512 Sum_probs=0.0
Q ss_pred ccccCCCCcccCCCC----ccccc
Q 019486 161 FSCIGCKNCNNVAPE----VFKIE 180 (340)
Q Consensus 161 ~~CiGCg~C~~v~P~----~F~ie 180 (340)
..|.+||.|...||. .|.++
T Consensus 67 ~~C~~Cg~C~~~CP~apPhef~i~ 90 (389)
T PRK15033 67 NLCHNCGACLHACQYAPPHEFAVN 90 (389)
T ss_pred HhCcCcccccccCcCCCCcccCCC
No 292
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=21.82 E-value=43 Score=33.21 Aligned_cols=21 Identities=29% Similarity=0.863 Sum_probs=16.9
Q ss_pred ccccccCCCCcccCCCCcccc
Q 019486 159 DEFSCIGCKNCNNVAPEVFKI 179 (340)
Q Consensus 159 De~~CiGCg~C~~v~P~~F~i 179 (340)
....|+|||.|..+||..-.+
T Consensus 305 g~~~CvgCGrC~~~CP~~I~i 325 (344)
T PRK15055 305 GYHMCVGCGRCDDRCPEYISF 325 (344)
T ss_pred chhhCcCcCccccccCCCCCH
Confidence 345799999999999986544
No 293
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=21.80 E-value=43 Score=31.43 Aligned_cols=18 Identities=28% Similarity=0.698 Sum_probs=15.2
Q ss_pred ccccccCCCCcccCCCCc
Q 019486 159 DEFSCIGCKNCNNVAPEV 176 (340)
Q Consensus 159 De~~CiGCg~C~~v~P~~ 176 (340)
....||.||.|...||..
T Consensus 145 ~~~~CI~Cg~C~saCP~~ 162 (244)
T PRK12385 145 QFSGCINCGLCYAACPQF 162 (244)
T ss_pred HHHhcCcCccccCcCcCc
Confidence 345799999999999974
No 294
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=21.71 E-value=58 Score=30.59 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=18.3
Q ss_pred ccccccccCCCCcccCCCCc-cccc
Q 019486 157 FVDEFSCIGCKNCNNVAPEV-FKIE 180 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~-F~ie 180 (340)
..+...|++|+.|...||.. ..+.
T Consensus 195 v~~~~~C~~C~~C~~~Cp~~AI~~~ 219 (259)
T cd07030 195 VEDLEDCSLCKLCERACDAGAIRVG 219 (259)
T ss_pred EeChhhCcCchHHHHhCCCCcEEEE
Confidence 35677899999999999943 3444
No 295
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=21.41 E-value=28 Score=30.56 Aligned_cols=22 Identities=27% Similarity=0.458 Sum_probs=18.3
Q ss_pred ccccccccCCCCcccCCCCccc
Q 019486 157 FVDEFSCIGCKNCNNVAPEVFK 178 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~F~ 178 (340)
.++...|++|+.|..+||....
T Consensus 139 ~i~~~~C~~Cg~Cv~~CP~~AI 160 (165)
T TIGR01944 139 TVIADECTGCDLCVEPCPTDCI 160 (165)
T ss_pred EeecccccChhHHHHhcCcCce
Confidence 4677889999999999997653
No 296
>PRK08764 ferredoxin; Provisional
Probab=20.98 E-value=44 Score=28.29 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=17.7
Q ss_pred ccccccccCCCCcccCCCCcc
Q 019486 157 FVDEFSCIGCKNCNNVAPEVF 177 (340)
Q Consensus 157 fvDe~~CiGCg~C~~v~P~~F 177 (340)
.++...|++|+.|..+||...
T Consensus 111 ~v~~~~C~~Cg~Cv~~CP~~A 131 (135)
T PRK08764 111 TVIAPLCTGCELCVPACPVDC 131 (135)
T ss_pred eecCCcCcCccchhhhcCccc
Confidence 456678999999999999764
No 297
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=20.62 E-value=32 Score=35.95 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=19.5
Q ss_pred cccccccccCCCCcccCCCCccc
Q 019486 156 VFVDEFSCIGCKNCNNVAPEVFK 178 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~~F~ 178 (340)
+.++...|++|+.|..+||..+.
T Consensus 536 ~~i~~~~C~~Cg~C~~~CP~~Ai 558 (564)
T PRK12771 536 YHFDYDKCTGCHICADVCPCGAI 558 (564)
T ss_pred EEEecccCcChhHHHhhcCcCce
Confidence 45788899999999999997653
No 298
>PRK13795 hypothetical protein; Provisional
Probab=20.39 E-value=34 Score=36.70 Aligned_cols=25 Identities=40% Similarity=0.728 Sum_probs=20.7
Q ss_pred cccccccccCCCCcccCCCCccccc
Q 019486 156 VFVDEFSCIGCKNCNNVAPEVFKIE 180 (340)
Q Consensus 156 vfvDe~~CiGCg~C~~v~P~~F~ie 180 (340)
+.++...|++|+.|..+||....++
T Consensus 607 ~~id~~~C~~Cg~C~~aCP~~a~~~ 631 (636)
T PRK13795 607 ISVDEEKCIHCGKCTEVCPVVKYKD 631 (636)
T ss_pred EEechhhcCChhHHHhhcCCCeeEe
Confidence 4567789999999999999876654
No 299
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=20.39 E-value=48 Score=31.37 Aligned_cols=17 Identities=41% Similarity=0.651 Sum_probs=14.5
Q ss_pred cccccCCCCcccCCCCc
Q 019486 160 EFSCIGCKNCNNVAPEV 176 (340)
Q Consensus 160 e~~CiGCg~C~~v~P~~ 176 (340)
-..||.||.|..+||..
T Consensus 141 ~~~CI~CG~C~s~CPv~ 157 (251)
T PRK12386 141 FRKCIECFLCQNVCHVV 157 (251)
T ss_pred hhhcccCCcccCcCCcc
Confidence 34599999999999965
No 300
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=20.25 E-value=48 Score=32.47 Aligned_cols=16 Identities=25% Similarity=0.492 Sum_probs=13.9
Q ss_pred ccccCCCCcccCCCCc
Q 019486 161 FSCIGCKNCNNVAPEV 176 (340)
Q Consensus 161 ~~CiGCg~C~~v~P~~ 176 (340)
..||.||.|...||..
T Consensus 152 ~~Ci~CG~C~s~CP~~ 167 (329)
T PRK12577 152 GNCILCGACYSECNAR 167 (329)
T ss_pred hhCcccCcccccCCCC
Confidence 4599999999999965
Done!