BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019487
         (340 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P08443|ATPZ_SYNP6 ATP synthase protein I OS=Synechococcus sp. (strain ATCC 27144 /
           PCC 6301 / SAUG 1402/1) GN=atpI PE=3 SV=1
          Length = 118

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 15/125 (12%)

Query: 205 QYFKLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAG 264
           +Y+ L+ +L  +TL    V   + + +YS   AAS+  G +G L+Y+RMLG  V+ +   
Sbjct: 3   EYYALQRQLLQVTLICTVVIFGAVWWAYSLNTAASYLLGAMGGLLYLRMLGKAVERI--- 59

Query: 265 AKGLMKGAVGQPRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQA 324
             G  +   G+ RL + VVL+++  RW           +LEL+P+ +GF TYK A  +  
Sbjct: 60  --GERRRQFGKSRLALFVVLIVLAARWQ----------YLELMPVFLGFLTYKAALIWYT 107

Query: 325 VEEAV 329
           +   +
Sbjct: 108 LRAVI 112


>sp|P12403|ATPZ_NOSS1 ATP synthase protein I OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
           GN=atpI PE=3 SV=2
          Length = 122

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 67/125 (53%), Gaps = 15/125 (12%)

Query: 204 EQYFKLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAA 263
           +++++L  +L  +TL + GV  +S +I YS  IA ++  G    +VY+RML   V+ +  
Sbjct: 2   QEFYQLYQELVLITLVLTGVVFISVWIFYSLNIALNYLLGACTGVVYLRMLAKDVERL-- 59

Query: 264 GAKGLMKGAVGQPRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQ 323
              G  K ++ + RL + + L+++ +RWN+          L+++P+ +GF TYK      
Sbjct: 60  ---GREKQSLSKTRLALLMALILLASRWNQ----------LQIMPIFLGFLTYKATLIIY 106

Query: 324 AVEEA 328
            V  A
Sbjct: 107 VVRVA 111


>sp|Q05376|ATPZ_SYNP1 ATP synthase protein I OS=Synechococcus sp. (strain PCC 6716)
           GN=atpI PE=3 SV=2
          Length = 115

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 15/117 (12%)

Query: 205 QYFKLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAG 264
           ++++L  +L   +L +  +   + ++ Y    A ++  G   SL+Y+R+L   V+ +   
Sbjct: 3   EFYQLCRELFTTSLVLMAIAFGTVWVIYDLNTALNYLLGASASLIYLRLLARNVERLGHD 62

Query: 265 AKGLMKGAVGQPRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATF 321
            K L     G+ +LLV V ++++  RW+E          L +IP+ +GF TYK A  
Sbjct: 63  QKKL-----GKTQLLVVVAVIILAARWHE----------LHIIPVFLGFLTYKAAIL 104


>sp|P27196|ATPZ_SYNY3 ATP synthase protein I OS=Synechocystis sp. (strain PCC 6803 /
           Kazusa) GN=atpI PE=3 SV=1
          Length = 117

 Score = 40.0 bits (92), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 15/125 (12%)

Query: 206 YFKLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGA 265
           +++L+ +L   TL    +  V     YS  IA ++  G L  LVY+++L   V+ + A  
Sbjct: 4   FYRLQRQLLTWTLVATAIIFVCVVWVYSLNIALNYLLGALVGLVYLKLLAKDVERIGA-- 61

Query: 266 KGLMKGAVGQPRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQAV 325
                G  G   L V V L++I  +            +LE++P+ +GF TYK A  F  +
Sbjct: 62  ---QSGRAGVKGLAVFVGLIIIATQRE----------NLEVLPIFLGFLTYKAAIIFYML 108

Query: 326 EEAVS 330
           +   +
Sbjct: 109 QSVFT 113


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.131    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,832,258
Number of Sequences: 539616
Number of extensions: 5547826
Number of successful extensions: 16258
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 16195
Number of HSP's gapped (non-prelim): 89
length of query: 340
length of database: 191,569,459
effective HSP length: 118
effective length of query: 222
effective length of database: 127,894,771
effective search space: 28392639162
effective search space used: 28392639162
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)